Citrus Sinensis ID: 044030
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 449 | 2.2.26 [Sep-21-2011] | |||||||
| Q8RXN0 | 703 | ABC transporter G family | yes | no | 0.875 | 0.559 | 0.540 | 1e-119 | |
| Q8RWI9 | 691 | ABC transporter G family | no | no | 0.930 | 0.604 | 0.460 | 1e-105 | |
| Q9C8K2 | 687 | ABC transporter G family | no | no | 0.933 | 0.609 | 0.458 | 1e-105 | |
| Q9C8J8 | 678 | ABC transporter G family | no | no | 0.888 | 0.588 | 0.429 | 1e-96 | |
| Q9ZUU9 | 730 | ABC transporter G family | no | no | 0.888 | 0.546 | 0.377 | 4e-74 | |
| Q7TMS5 | 657 | ATP-binding cassette sub- | yes | no | 0.924 | 0.631 | 0.334 | 1e-58 | |
| Q80W57 | 657 | ATP-binding cassette sub- | yes | no | 0.841 | 0.575 | 0.339 | 3e-56 | |
| Q8MIB3 | 656 | ATP-binding cassette sub- | yes | no | 0.830 | 0.568 | 0.342 | 6e-56 | |
| Q55DW4 | 793 | ABC transporter G family | yes | no | 0.514 | 0.291 | 0.461 | 2e-55 | |
| Q5MB13 | 654 | ATP-binding cassette sub- | yes | no | 0.830 | 0.570 | 0.336 | 1e-54 |
| >sp|Q8RXN0|AB11G_ARATH ABC transporter G family member 11 OS=Arabidopsis thaliana GN=ABCG11 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 429 bits (1102), Expect = e-119, Method: Compositional matrix adjust.
Identities = 225/416 (54%), Positives = 290/416 (69%), Gaps = 23/416 (5%)
Query: 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDT 97
LTW+DLTV +V+ G + ++LE LTGYA+PG L A+MGPSGSGK+T+LDALA RL ++
Sbjct: 50 LTWQDLTV-MVTMGDGETQNVLEGLTGYAEPGSLTALMGPSGSGKSTMLDALASRLAANA 108
Query: 98 RQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERA 157
+G +L+NG K L++GT+AYVTQDD LI TLTV+E ++YSA+++LPD M +S+K+
Sbjct: 109 FLSGTVLLNGRKTKLSFGTAAYVTQDDNLIGTLTVRETIWYSARVRLPDKMLRSEKRALV 168
Query: 158 EVTIREMGLQDAMNTRI-----RRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAAS 212
E TI EMGLQD +T I R +SGG+KRRVSI++EIL RP+LLFLDEPTSGLDSA++
Sbjct: 169 ERTIIEMGLQDCADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSASA 228
Query: 213 YYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANEFFA 272
++V + L RD GRT+IASIHQPSSEVF+LF L LLS G+TVYFG A+ A EFFA
Sbjct: 229 FFVTQTLRAL-SRD--GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGQASDAYEFFA 285
Query: 273 FNGFPCPTHQNPSDHFLKTINKDFQK-------------EAEEGLADGEIPTEEVINILK 319
GFPCP +NPSDHFL+ IN DF K EA + + +I T E I +L
Sbjct: 286 QAGFPCPALRNPSDHFLRCINSDFDKVRATLKGSMKLRFEASDDPLE-KITTAEAIRLLV 344
Query: 320 RSYKSCGIYEQVGSQVAEICKQNYGTLEKKRKHASFLTQCHVLTRRSFVNMYRDLGYYWF 379
Y + Y ++V EI + L+ ASFL Q + LT+RSF+NM RD GYYW
Sbjct: 345 DYYHTSDYYYTAKAKVEEISQFKGTILDSGGSQASFLLQTYTLTKRSFINMSRDFGYYWL 404
Query: 380 RLAIYISMALGLATLFSNLGTGYRSIQARGSLLMFVASFITFMTIGGFPSFVEDMK 435
RL IYI + + + T++ N+GT Y +I ARGS FV F+TFM+IGGFPSFVEDMK
Sbjct: 405 RLLIYILVTVCIGTIYLNVGTSYSAILARGSCASFVFGFVTFMSIGGFPSFVEDMK 460
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Required for the cuticle and pollen coat development by controlling cutin and maybe wax transport to the extracellular matrix. Involved in developmental plasticity and stress responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8RWI9|AB15G_ARATH ABC transporter G family member 15 OS=Arabidopsis thaliana GN=ABCG15 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 382 bits (981), Expect = e-105, Method: Compositional matrix adjust.
Identities = 203/441 (46%), Positives = 288/441 (65%), Gaps = 23/441 (5%)
Query: 15 LEMESSNKTANSLINVNE-DDGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLA 73
+E+E S+ L + E G +L W+DLTV I + + +L+ L GYA+PG ++A
Sbjct: 1 MELEGSSSGRRQLPSKLEMSRGAYLAWEDLTVVIPNFSDGPTRRLLQRLNGYAEPGRIMA 60
Query: 74 IMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVK 133
IMGPSGSGK+TLLD+LAGRL + TG +L+NG K L YG AYVTQ+D L+ TLTV+
Sbjct: 61 IMGPSGSGKSTLLDSLAGRLARNVVMTGNLLLNGKKARLDYGLVAYVTQEDVLLGTLTVR 120
Query: 134 EAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAM-----NTRIRRLSGGQKRRVSIS 188
E + YSA L+LP M K + + E TI E+GLQD N R +SGG+++RVSI+
Sbjct: 121 ETITYSAHLRLPSDMSKEEVSDIVEGTIMELGLQDCSDRVIGNWHARGVSGGERKRVSIA 180
Query: 189 IEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFH 248
+EILTRP++LFLDEPTSGLDSA++++V+ + + RD GRT+I+S+HQPSSEVF LF
Sbjct: 181 LEILTRPQILFLDEPTSGLDSASAFFVIQALRNIA-RD--GRTVISSVHQPSSEVFALFD 237
Query: 249 NLCLLSAGQTVYFGPATAANEFFAFNGFPCPTHQNPSDHFLKTINKDFQK-----EAEEG 303
+L LLS+G++VYFG A +A EFFA +GFPCP +NPSDHFL+ IN DF + +
Sbjct: 238 DLFLLSSGESVYFGEAKSAVEFFAESGFPCPKKRNPSDHFLRCINSDFDTVTATLKGSQR 297
Query: 304 LADGEIPTEEVINI--------LKRSYKSCGIYEQVGSQVAEICKQNYGTLE-KKRKHAS 354
+ + ++ ++N+ L +YK + S++ E+ +E +K A+
Sbjct: 298 IQETPATSDPLMNLATSVIKARLVENYKRSKYAKSAKSRIRELSNIEGLEMEIRKGSEAT 357
Query: 355 FLTQCHVLTRRSFVNMYRDLGYYWFRLAIYISMALGLATLFSNLGTGYRSIQARGSLLMF 414
+ Q LT RSF+NM RD+GYYW R+ YI +++ + T+F ++G Y SI AR S F
Sbjct: 358 WWKQLRTLTARSFINMCRDVGYYWTRIISYIVVSISVGTIFYDVGYSYTSILARVSCGGF 417
Query: 415 VASFITFMTIGGFPSFVEDMK 435
+ F+TFM+IGGFPSF+E+MK
Sbjct: 418 ITGFMTFMSIGGFPSFLEEMK 438
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C8K2|AB12G_ARATH ABC transporter G family member 12 OS=Arabidopsis thaliana GN=ABCG12 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 380 bits (977), Expect = e-105, Method: Compositional matrix adjust.
Identities = 202/441 (45%), Positives = 286/441 (64%), Gaps = 22/441 (4%)
Query: 15 LEMESSNKTANSLINVNEDDGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAI 74
+E+ES++ G +L W+DLTV I + + +L+ L G+A+PG ++AI
Sbjct: 1 MELESTSNGRRPPPPAEIGRGAYLAWEDLTVVIPNFSGGPTRRLLDGLNGHAEPGRIMAI 60
Query: 75 MGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKE 134
MGPSGSGK+TLLD+LAGRL + TG +L+NG K L YG AYVTQ+D L+ TLTV+E
Sbjct: 61 MGPSGSGKSTLLDSLAGRLARNVIMTGNLLLNGKKARLDYGLVAYVTQEDILMGTLTVRE 120
Query: 135 AVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRI-----RRLSGGQKRRVSISI 189
+ YSA L+L + K + + E TI E+GLQD + I R +SGG+++RVS+++
Sbjct: 121 TITYSAHLRLSSDLTKEEVNDIVEGTIIELGLQDCADRVIGNWHSRGVSGGERKRVSVAL 180
Query: 190 EILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHN 249
EILTRP++LFLDEPTSGLDSA++++V+ + + RDG GRT+++SIHQPSSEVF LF +
Sbjct: 181 EILTRPQILFLDEPTSGLDSASAFFVIQALRNIA-RDG-GRTVVSSIHQPSSEVFALFDD 238
Query: 250 LCLLSAGQTVYFGPATAANEFFAFNGFPCPTHQNPSDHFLKTINKDFQ---------KEA 300
L LLS+G+TVYFG + A EFFA GFPCP +NPSDHFL+ IN DF +
Sbjct: 239 LFLLSSGETVYFGESKFAVEFFAEAGFPCPKKRNPSDHFLRCINSDFDTVTATLKGSQRI 298
Query: 301 EEGLADGE----IPTEEVINILKRSYKSCGIYEQVGSQVAEIC--KQNYGTLEKKRKHAS 354
E A + + T E+ L +Y+ + S++ E+ + ++G +K A+
Sbjct: 299 RETPATSDPLMNLATSEIKARLVENYRRSVYAKSAKSRIRELASIEGHHGMEVRKGSEAT 358
Query: 355 FLTQCHVLTRRSFVNMYRDLGYYWFRLAIYISMALGLATLFSNLGTGYRSIQARGSLLMF 414
+ Q LT+RSFVNM RD+GYYW R+ IYI ++ + T+F ++G Y SI AR S F
Sbjct: 359 WFKQLRTLTKRSFVNMCRDIGYYWSRIVIYIVVSFCVGTIFYDVGHSYTSILARVSCGGF 418
Query: 415 VASFITFMTIGGFPSFVEDMK 435
+ F+TFM+IGGFPSF+E+MK
Sbjct: 419 ITGFMTFMSIGGFPSFIEEMK 439
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Involved in the secretion of cuticular wax from epidermal cells to the cuticle. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C8J8|AB13G_ARATH ABC transporter G family member 13 OS=Arabidopsis thaliana GN=ABCG13 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 353 bits (907), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 186/433 (42%), Positives = 278/433 (64%), Gaps = 34/433 (7%)
Query: 33 DDGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGR 92
+ +++ W+DLTV I + G+ + +L + G +P +LAIMGPSGSGK+TLLDALAGR
Sbjct: 5 EGAMYVAWEDLTVVIPNFGEGATKRLLNGVNGCGEPNRILAIMGPSGSGKSTLLDALAGR 64
Query: 93 LGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSD 152
L + +GK+L+NG K+ L +G +AYVTQ+D L+ TLTV+E++ YSA L+LP + + +
Sbjct: 65 LAGNVVMSGKVLVNGKKRRLDFGAAAYVTQEDVLLGTLTVRESISYSAHLRLPSKLTREE 124
Query: 153 KKERAEVTIREMGLQDAM-----NTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGL 207
+ E TI +MGL++ N +R +SGG+K+R+SI++E+LT+P LLFLDEPTSGL
Sbjct: 125 ISDIVEATITDMGLEECSDRTIGNWHLRGISGGEKKRLSIALEVLTKPSLLFLDEPTSGL 184
Query: 208 DSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267
DSA++++V+ + + G+T+++SIHQPS EVF LF +L LLS G+TVYFG A +A
Sbjct: 185 DSASAFFVVQILRNIASS---GKTVVSSIHQPSGEVFALFDDLLLLSGGETVYFGEAESA 241
Query: 268 NEFFAFNGFPCPTHQNPSDHFLKTINKDF---------------------QKEAEEGLAD 306
+FF GFPCP+ +NPSDHFL+ +N DF Q D
Sbjct: 242 TKFFGEAGFPCPSRRNPSDHFLRCVNSDFDNVTAALVESRRINDSSFSLHQLHETTNTLD 301
Query: 307 --GEIPTEEVINILKRSYKSCGIYEQVG-SQVAEICK-QNYGTLEKKRKHASFLTQCHVL 362
+IPT E+ L R +K C +Y +++ EI T KK ++ Q +L
Sbjct: 302 PLDDIPTAEIRTTLVRKFK-CSLYAAASRARIQEIASIVGIVTERKKGSQTNWWKQLRIL 360
Query: 363 TRRSFVNMYRDLGYYWFRLAIYISMALGLATLFSNLGTGYRSIQARGSLLMFVASFITFM 422
T+RSF+NM RDLGYYW R+A+YI +++ + ++F N+G + ++ + + F+A F+TFM
Sbjct: 361 TQRSFINMSRDLGYYWMRIAVYIVLSICVGSIFFNVGRNHTNVMSTAACGGFMAGFMTFM 420
Query: 423 TIGGFPSFVEDMK 435
+IGGF SF+E+MK
Sbjct: 421 SIGGFQSFIEEMK 433
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZUU9|AB3G_ARATH ABC transporter G family member 3 OS=Arabidopsis thaliana GN=ABCG3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 279 bits (713), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 159/421 (37%), Positives = 242/421 (57%), Gaps = 22/421 (5%)
Query: 30 VNEDDGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDAL 89
V + G + WKDLTVT+ +K S +++ GYA PG + IMGP+ SGK+TLL AL
Sbjct: 106 VRKIAGASIAWKDLTVTM-KGKRKYSDKVVKSSNGYAFPGTMTVIMGPAKSGKSTLLRAL 164
Query: 90 AGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMP 149
AGRL + G++ +NG K + YG+ +V ++ LI +LTV+E +YYSA LQLP +
Sbjct: 165 AGRLPPSAKMYGEVFVNGSKSHMPYGSYGFVERETQLIGSLTVREFLYYSALLQLPGFLF 224
Query: 150 KSDKKERAEVTIREMGLQDAMNTRI------RRLSGGQKRRVSISIEILTRPKLLFLDEP 203
+ K+ E I+ M L D N I + L G++RRVSI+ E++ RP +LF+DEP
Sbjct: 225 Q--KRSVVEDAIQAMSLSDYANKLIGGHCYMKGLRSGERRRVSIARELVMRPHILFIDEP 282
Query: 204 TSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263
LDS ++ +M + KL +G T++ +I+Q S+EVF LF +CLLS G T++FG
Sbjct: 283 LYHLDSVSALLMMVTLKKLAS---MGCTLVFTIYQSSTEVFGLFDRICLLSNGNTLFFGE 339
Query: 264 ATAANEFFAFNGFPCPTHQNPSDHFLKTINKDFQK--------EAEEG-LADGEIPTEEV 314
A + F+ GFPCP Q+PSDHFL+ IN DF + + + G + + T
Sbjct: 340 TLACLQHFSNAGFPCPIMQSPSDHFLRAINTDFDRIIAMCKNWQDDNGDFSAVNMDTAVA 399
Query: 315 INILKRSYKSCGIYEQVGSQVAEICKQNYGTLEKKRKHASFLTQCHVLTRRSFVNMYRDL 374
I L+ +YKS + V + + ++ ++ GT K + A T+ VLT RS + M R+
Sbjct: 400 IRTLEATYKSSADADSVEAMIIKLTERE-GTQLKSKGKAGAATRVAVLTWRSLLVMSREW 458
Query: 375 GYYWFRLAIYISMALGLATLFSNLGTGYRSIQARGSLLMFVASFITFMTIGGFPSFVEDM 434
YYW RL +Y+ + L + TL+S LG S+ R + + SF + + I G PS ++++
Sbjct: 459 KYYWLRLILYMILTLSIGTLYSGLGHSLSSVATRVAAVFVFVSFASLLGIAGIPSLLKEI 518
Query: 435 K 435
K
Sbjct: 519 K 519
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7TMS5|ABCG2_MOUSE ATP-binding cassette sub-family G member 2 OS=Mus musculus GN=Abcg2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 227 bits (579), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 156/466 (33%), Positives = 249/466 (53%), Gaps = 51/466 (10%)
Query: 8 ITETNEALEMESSNKTANSLINVNED------DGVFLTWKDLTVTI-VSNG----KKGSS 56
++ +N+ + + S + N L N +G L++ +T + V +G K
Sbjct: 1 MSSSNDHVLVPMSQRNNNGLPRTNSRAVRTLAEGDVLSFHHITYRVKVKSGFLVRKTVEK 60
Query: 57 SILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQ-TGKILINGHKKALAYG 115
IL D+ G KPG L AI+GP+G GK++LLD LA R D + +G +LING + +
Sbjct: 61 EILSDINGIMKPG-LNAILGPTGGGKSSLLDVLAAR--KDPKGLSGDVLINGAPQPAHFK 117
Query: 116 T-SAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTR- 173
S YV QDD ++ TLTV+E + +SA L+LP TM +K ER I+E+GL+ +++
Sbjct: 118 CCSGYVVQDDVVMGTLTVRENLQFSAALRLPTTMKNHEKNERINTIIKELGLEKVADSKV 177
Query: 174 ----IRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIG 229
IR +SGG+++R SI +E++T P +LFLDEPT+GLDS+ + V+ + ++ ++ G
Sbjct: 178 GTQFIRGISGGERKRTSIGMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQ---G 234
Query: 230 RTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANEFFAFNGFPCPTHQNPSDHFL 289
RTII SIHQP +F+LF +L LL++G+ V+ GPA A E+FA G+ C + NP+D FL
Sbjct: 235 RTIIFSIHQPRYSIFKLFDSLTLLASGKLVFHGPAQKALEYFASAGYHCEPYNNPADFFL 294
Query: 290 KTINKD-----FQKEAEEGLAD-------GEIPTEEVINILKRSYKSCGIYEQVGSQVAE 337
IN D +E ++ A+ GE P VI L Y + IY + +++ +
Sbjct: 295 DVINGDSSAVMLNREEQDNEANKTEEPSKGEKP---VIENLSEFYINSAIYGETKAELDQ 351
Query: 338 ICKQNYGTLEKKRKHA--------SFLTQCHVLTRRSFVNMYRDLGYYWFRLAIYISMAL 389
+ G EKK A SF Q + RRSF N+ + +L + + + L
Sbjct: 352 LP----GAQEKKGTSAFKEPVYVTSFCHQLRWIARRSFKNLLGNPQASVAQLIVTVILGL 407
Query: 390 GLATLFSNLGTGYRSIQARGSLLMFVASFITFMTIGGFPSFVEDMK 435
+ ++ +L +Q R +L F+ + F ++ FV + K
Sbjct: 408 IIGAIYFDLKYDAAGMQNRAGVLFFLTTNQCFSSVSAVELFVVEKK 453
|
Xenobiotic transporter that may play an important role in the exclusion of xenobiotics from the brain. May be involved in brain-to-blood efflux (By similarity). May play a role in early stem cell self-renewal by blocking differentiation. Mus musculus (taxid: 10090) |
| >sp|Q80W57|ABCG2_RAT ATP-binding cassette sub-family G member 2 OS=Rattus norvegicus GN=Abcg2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 219 bits (558), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 137/404 (33%), Positives = 219/404 (54%), Gaps = 26/404 (6%)
Query: 52 KKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQ-TGKILINGHKK 110
K IL D+ G KPG L AI+GP+G GK++LLD LA R D R +G +LING +
Sbjct: 56 KTAEKEILSDINGIMKPG-LNAILGPTGGGKSSLLDVLAAR--KDPRGLSGDVLINGAPQ 112
Query: 111 ALAYG-TSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDA 169
+ +S YV QDD ++ TLTV+E + +SA L+LP M +K ER I+E+GL
Sbjct: 113 PANFKCSSGYVVQDDVVMGTLTVRENLQFSAALRLPKAMKTHEKNERINTIIKELGLDKV 172
Query: 170 MNTRI-----RRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQ 224
++++ R +SGG+++R SI +E++T P +LFLDEPT+GLDS+ + V+ + ++ +
Sbjct: 173 ADSKVGTQFTRGISGGERKRTSIGMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSK 232
Query: 225 RDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANEFFAFNGFPCPTHQNP 284
+ GRTII SIHQP +F+LF +L LL++G+ ++ GPA A E+FA G+ C + NP
Sbjct: 233 Q---GRTIIFSIHQPRYSIFKLFDSLTLLASGKLMFHGPAQKALEYFASAGYHCEPYNNP 289
Query: 285 SDHFLKTINKDF------QKEAEEGLADGEIPTEE---VINILKRSYKSCGIYEQVGSQV 335
+D FL IN D + E + E P++ +I L Y + IY + +++
Sbjct: 290 ADFFLDVINGDSSAVMLNRGEQDHEANKTEEPSKREKPIIENLAEFYINSTIYGETKAEL 349
Query: 336 AEIC----KQNYGTLEKKRKHASFLTQCHVLTRRSFVNMYRDLGYYWFRLAIYISMALGL 391
++ K+ + SF Q + RRSF N+ + +L + + + L +
Sbjct: 350 DQLPVAQKKKGSSAFREPVYVTSFCHQLRWIARRSFKNLLGNPQASVAQLIVTVILGLII 409
Query: 392 ATLFSNLGTGYRSIQARGSLLMFVASFITFMTIGGFPSFVEDMK 435
L+ L +Q R + F+ + F ++ FV + K
Sbjct: 410 GALYFGLKNDPTGMQNRAGVFFFLTTNQCFTSVSAVELFVVEKK 453
|
Xenobiotic transporter that may play an important role in the exclusion of xenobiotics from the brain. May be involved in brain-to-blood efflux. Rattus norvegicus (taxid: 10116) |
| >sp|Q8MIB3|ABCG2_PIG ATP-binding cassette sub-family G member 2 OS=Sus scrofa GN=ABCG2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 218 bits (556), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 136/397 (34%), Positives = 224/397 (56%), Gaps = 24/397 (6%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYG-T 116
IL ++ G KPG L AI+GP+G GK++LLD LA R +G +LING + +
Sbjct: 63 ILTNINGIMKPG-LNAILGPTGGGKSSLLDVLAAR-KDPHGLSGDVLINGAPRPANFKCN 120
Query: 117 SAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTR--- 173
S YV QDD ++ TLTV+E + +SA L+LP TM +K ER + I+E+GL +++
Sbjct: 121 SGYVVQDDVVMGTLTVRENLQFSAALRLPTTMTNHEKNERINMVIQELGLDKVADSKVGT 180
Query: 174 --IRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRT 231
IR +SGG+++R SI++E++T P +LFLDEPT+GLDS+ + V+ + ++ ++ GRT
Sbjct: 181 QFIRGVSGGERKRTSIAMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQ---GRT 237
Query: 232 IIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANEFFAFNGFPCPTHQNPSDHFLKT 291
II SIHQP +F+LF +L LL++G+ ++ GPA A +FA G+ C + NP+D FL
Sbjct: 238 IIFSIHQPRYSIFKLFDSLTLLASGRLMFHGPAREALGYFASIGYNCEPYNNPADFFLDV 297
Query: 292 INKD------FQKEAEEGLADGEIPTEE---VINILKRSYKSCGIYEQVGSQVAEIC--- 339
IN D + + +EG + E P E+ +I+ L Y + ++ ++ +
Sbjct: 298 INGDSSAVVLSRADRDEGAQEPEEPPEKDTPLIDKLAAFYTNSSFFKDTKVELDQFSGGR 357
Query: 340 KQNYGTLEKKRKH-ASFLTQCHVLTRRSFVNMYRDLGYYWFRLAIYISMALGLATLFSNL 398
K+ ++ K+ + SF Q ++RRSF N+ + ++ + I + L + +F +L
Sbjct: 358 KKKKSSVYKEVTYTTSFCHQLRWISRRSFKNLLGNPQASVAQIIVTIILGLVIGAIFYDL 417
Query: 399 GTGYRSIQARGSLLMFVASFITFMTIGGFPSFVEDMK 435
IQ R +L F+ + F ++ V + K
Sbjct: 418 KNDPSGIQNRAGVLFFLTTNQCFSSVSAVELLVVEKK 454
|
Xenobiotic transporter that may play an important role in the exclusion of xenobiotics from the brain. May be involved in brain-to-blood efflux. Sus scrofa (taxid: 9823) |
| >sp|Q55DW4|ABCG1_DICDI ABC transporter G family member 1 OS=Dictyostelium discoideum GN=abcG1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 217 bits (552), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 113/245 (46%), Positives = 159/245 (64%), Gaps = 14/245 (5%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAY--G 115
IL ++ G+ + G + AIMGPSG+GKTTLLD LA RL + +G + +NG+K
Sbjct: 138 ILTNINGHIESGTIFAIMGPSGAGKTTLLDILAHRL--NINGSGTMYLNGNKSDFNIFKK 195
Query: 116 TSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNT--- 172
YVTQ D+L+ +LTV+E + + AQL++P +P +K +R + I EMGL +T
Sbjct: 196 LCGYVTQSDSLMPSLTVRETLNFYAQLKMPRDVPLKEKLQRVQDIIDEMGLNRCADTLVG 255
Query: 173 ----RIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGI 228
+IR +SGG++RRV+ISIE+LT P ++ LDEPTSGLD++ S+YVMS + KL +
Sbjct: 256 TADNKIRGISGGERRRVTISIELLTGPSVILLDEPTSGLDASTSFYVMSALKKLAKS--- 312
Query: 229 GRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANEFFAFNGFPCPTHQNPSDHF 288
GRTII +IHQP S ++ +F NL LL G T+Y+G A A E+F NG+ C NP+D F
Sbjct: 313 GRTIICTIHQPRSNIYDMFDNLLLLGDGNTIYYGKANKALEYFNANGYHCSEKTNPADFF 372
Query: 289 LKTIN 293
L IN
Sbjct: 373 LDLIN 377
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|Q5MB13|ABCG2_MACMU ATP-binding cassette sub-family G member 2 OS=Macaca mulatta GN=ABCG2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 214 bits (544), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 133/395 (33%), Positives = 218/395 (55%), Gaps = 22/395 (5%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYG-T 116
IL ++ G KPG L AI+GP+G GK++LLD LA R + +G +LING + +
Sbjct: 63 ILSNINGIMKPG-LNAILGPTGGGKSSLLDVLAAR-KDPSGLSGDVLINGALRPTNFKCN 120
Query: 117 SAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTR--- 173
S YV QDD ++ TLTV+E + +SA L+LP TM +K ER I+E+GL +++
Sbjct: 121 SGYVVQDDVVMGTLTVRENLQFSAALRLPTTMTNHEKNERINRVIQELGLDKVADSKVGT 180
Query: 174 --IRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRT 231
IR +SGG+++R SI +E++T P +LFLDEPT+GLDS+ + V+ + ++ ++ GRT
Sbjct: 181 QFIRGVSGGERKRTSIGMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQ---GRT 237
Query: 232 IIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANEFFAFNGFPCPTHQNPSDHFLKT 291
II SIHQP +F+LF +L LL++G+ ++ GPA A +F G+ C + NP+D FL
Sbjct: 238 IIFSIHQPRYSIFKLFDSLTLLASGRLMFHGPAQEALGYFESAGYHCEAYNNPADFFLDI 297
Query: 292 INKDFQKEA---EEGLADGEI--PTEE---VINILKRSYKSCGIYEQVGSQVAEIC---K 340
IN D A EE EI P++ ++ L Y Y++ +++ ++ K
Sbjct: 298 INGDSTAVALNREEDFKATEIIEPSKRDKPLVEKLAEIYVDSSFYKETKAELHQLSGGEK 357
Query: 341 QNYGTLEKKRKHASFLTQCHVLTRRSFVNMYRDLGYYWFRLAIYISMALGLATLFSNLGT 400
+ ++ SF Q +++RSF N+ + ++ + + + L + ++ L
Sbjct: 358 KKITVFKEISYTTSFCHQLRWVSKRSFKNLLGNPQASIAQIIVTVILGLVIGAIYFGLNN 417
Query: 401 GYRSIQARGSLLMFVASFITFMTIGGFPSFVEDMK 435
IQ R +L F+ + F ++ FV + K
Sbjct: 418 DSTGIQNRAGVLFFLTTNQCFSSVSAVELFVVEKK 452
|
Xenobiotic transporter that may play an important role in the exclusion of xenobiotics from the brain. May be involved in brain-to-blood efflux (By similarity). When overexpressed, the transfected cells become resistant to mitoxantrone. Overexpression in bone marrow stem cells does not interfere with hematopoietic stem cell maturation and increases the number of SP cells. Macaca mulatta (taxid: 9544) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 449 | ||||||
| 255569746 | 701 | ATP-binding cassette transporter, putati | 0.893 | 0.572 | 0.737 | 1e-174 | |
| 225462868 | 676 | PREDICTED: ABC transporter G family memb | 0.888 | 0.590 | 0.728 | 1e-169 | |
| 296087481 | 608 | unnamed protein product [Vitis vinifera] | 0.888 | 0.656 | 0.728 | 1e-169 | |
| 356546014 | 693 | PREDICTED: ABC transporter G family memb | 0.904 | 0.585 | 0.719 | 1e-168 | |
| 224060415 | 622 | white-brown-complex ABC transporter fami | 0.879 | 0.635 | 0.730 | 1e-168 | |
| 356524824 | 699 | PREDICTED: ABC transporter G family memb | 0.897 | 0.576 | 0.721 | 1e-167 | |
| 147782239 | 691 | hypothetical protein VITISV_012972 [Viti | 0.888 | 0.577 | 0.704 | 1e-166 | |
| 296088208 | 891 | unnamed protein product [Vitis vinifera] | 0.944 | 0.475 | 0.676 | 1e-166 | |
| 359497424 | 698 | PREDICTED: ABC transporter G family memb | 0.944 | 0.607 | 0.676 | 1e-166 | |
| 357476291 | 665 | White-brown-complex ABC transporter fami | 0.935 | 0.631 | 0.691 | 1e-165 |
| >gi|255569746|ref|XP_002525837.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223534842|gb|EEF36531.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 617 bits (1591), Expect = e-174, Method: Compositional matrix adjust.
Identities = 301/408 (73%), Positives = 347/408 (85%), Gaps = 7/408 (1%)
Query: 33 DDGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGR 92
D GVFL W+DL V VSNGKKGS SIL+ +TGYAKPG L+ IMGPSG GK+TLLDALAGR
Sbjct: 67 DHGVFLAWEDLWVN-VSNGKKGSKSILQGVTGYAKPGELMVIMGPSGCGKSTLLDALAGR 125
Query: 93 LGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSD 152
LGS+T Q+G ILINGHK+ LAYGTSAYVTQDDTL+TTLTV+EAV+YSAQLQLPD+M KS
Sbjct: 126 LGSNTSQSGSILINGHKQRLAYGTSAYVTQDDTLMTTLTVREAVHYSAQLQLPDSMSKSK 185
Query: 153 KKERAEVTIREMGLQDAMNTRI-----RRLSGGQKRRVSISIEILTRPKLLFLDEPTSGL 207
KKERAE+TI+EMGLQD+ TRI + LSGGQ+RRVSI IE+LTRP+LLFLDEPTSGL
Sbjct: 186 KKERAEMTIQEMGLQDSTETRIGGWGAKGLSGGQRRRVSICIEMLTRPRLLFLDEPTSGL 245
Query: 208 DSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267
DSAAS+YV+SRIA L Q+DGIGRTIIASIHQPS+EVFQLFH LCLLS+G+ V+FGPA+AA
Sbjct: 246 DSAASFYVLSRIASLDQKDGIGRTIIASIHQPSTEVFQLFHCLCLLSSGKVVFFGPASAA 305
Query: 268 NEFFAFNGFPCPTHQNPSDHFLKTINKDFQKEAEEGLADGEIPTEEVINILKRSYKSCGI 327
NEFFA NGFPCPT QNPSDHFLKTINKDF+K+ E GL G EE I L +SYKS
Sbjct: 306 NEFFALNGFPCPTLQNPSDHFLKTINKDFEKDLERGLGYGTT-AEEAIATLVKSYKSSHN 364
Query: 328 YEQVGSQVAEICKQNYGTLEKKRKHASFLTQCHVLTRRSFVNMYRDLGYYWFRLAIYISM 387
Y+QV VAEICKQ+ G L+K+R ASF+TQ +LTRRS VNM+RDLGYYW RLAIY+++
Sbjct: 365 YQQVRRHVAEICKQDSGALQKERTRASFITQSLILTRRSSVNMFRDLGYYWLRLAIYVAL 424
Query: 388 ALGLATLFSNLGTGYRSIQARGSLLMFVASFITFMTIGGFPSFVEDMK 435
A+GLAT+F NLG+ Y SI+ RGSLLMF+ASF+TFM IGGFPSFVEDMK
Sbjct: 425 AVGLATVFGNLGSSYASIKDRGSLLMFIASFLTFMAIGGFPSFVEDMK 472
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225462868|ref|XP_002270647.1| PREDICTED: ABC transporter G family member 11 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 600 bits (1547), Expect = e-169, Method: Compositional matrix adjust.
Identities = 298/409 (72%), Positives = 347/409 (84%), Gaps = 10/409 (2%)
Query: 32 EDDGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAG 91
ED GVFLTW+DL VT VSNGK G SIL+ LTGYA+PG +LAIMGPSG GK+TLLDALAG
Sbjct: 41 EDGGVFLTWEDLWVT-VSNGKSGCRSILQGLTGYARPGEVLAIMGPSGCGKSTLLDALAG 99
Query: 92 RLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKS 151
RLGS+T Q+G IL+NGHK+AL+YGTSAYVTQDDTLITTLTV EAVYYSA LQLPD+M KS
Sbjct: 100 RLGSNTSQSGIILVNGHKQALSYGTSAYVTQDDTLITTLTVGEAVYYSALLQLPDSMSKS 159
Query: 152 DKKERAEVTIREMGLQDAMNTRI-----RRLSGGQKRRVSISIEILTRPKLLFLDEPTSG 206
+KKERA++TIREMGLQD++NTRI + +SGGQKRRVSI IEILT PKLLFLDEPTSG
Sbjct: 160 EKKERADMTIREMGLQDSINTRIGGWGVKGISGGQKRRVSICIEILTHPKLLFLDEPTSG 219
Query: 207 LDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATA 266
LDSAASYYVMSRIA L ++ GRTII SIHQPSSEVF LF+NLCLLS+G+TVYFGPA
Sbjct: 220 LDSAASYYVMSRIAGLDRQH--GRTIITSIHQPSSEVFALFNNLCLLSSGRTVYFGPAHG 277
Query: 267 ANEFFAFNGFPCPTHQNPSDHFLKTINKDFQKEAEEGLADGEIPTEEVINILKRSYKSCG 326
A+EFF+ NGFPCPTHQNPSDHFLKTINKDF+++ E+G G+ EE I+IL ++YKS
Sbjct: 278 ADEFFSSNGFPCPTHQNPSDHFLKTINKDFEEDIEQGFG-GKKSKEEAIDILTKAYKSSD 336
Query: 327 IYEQVGSQVAEICKQNYGTLEKKRKHASFLTQCHVLTRRSFVNMYRDLGYYWFRLAIYIS 386
++QV +QV+EI KQ+ G L KKR HASFL QC VLTRRSFVNMYRDLGYYW RLAIY++
Sbjct: 337 NFQQVQTQVSEIYKQDGGAL-KKRSHASFLNQCLVLTRRSFVNMYRDLGYYWLRLAIYVA 395
Query: 387 MALGLATLFSNLGTGYRSIQARGSLLMFVASFITFMTIGGFPSFVEDMK 435
+ + L T+F N+G SI+ RGS+LM+VASF+TFM+IGGFPSFVEDMK
Sbjct: 396 LTVALGTIFHNVGYSNSSIKDRGSMLMYVASFLTFMSIGGFPSFVEDMK 444
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296087481|emb|CBI34070.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 599 bits (1545), Expect = e-169, Method: Compositional matrix adjust.
Identities = 298/409 (72%), Positives = 347/409 (84%), Gaps = 10/409 (2%)
Query: 32 EDDGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAG 91
ED GVFLTW+DL VT VSNGK G SIL+ LTGYA+PG +LAIMGPSG GK+TLLDALAG
Sbjct: 41 EDGGVFLTWEDLWVT-VSNGKSGCRSILQGLTGYARPGEVLAIMGPSGCGKSTLLDALAG 99
Query: 92 RLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKS 151
RLGS+T Q+G IL+NGHK+AL+YGTSAYVTQDDTLITTLTV EAVYYSA LQLPD+M KS
Sbjct: 100 RLGSNTSQSGIILVNGHKQALSYGTSAYVTQDDTLITTLTVGEAVYYSALLQLPDSMSKS 159
Query: 152 DKKERAEVTIREMGLQDAMNTRI-----RRLSGGQKRRVSISIEILTRPKLLFLDEPTSG 206
+KKERA++TIREMGLQD++NTRI + +SGGQKRRVSI IEILT PKLLFLDEPTSG
Sbjct: 160 EKKERADMTIREMGLQDSINTRIGGWGVKGISGGQKRRVSICIEILTHPKLLFLDEPTSG 219
Query: 207 LDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATA 266
LDSAASYYVMSRIA L ++ GRTII SIHQPSSEVF LF+NLCLLS+G+TVYFGPA
Sbjct: 220 LDSAASYYVMSRIAGLDRQH--GRTIITSIHQPSSEVFALFNNLCLLSSGRTVYFGPAHG 277
Query: 267 ANEFFAFNGFPCPTHQNPSDHFLKTINKDFQKEAEEGLADGEIPTEEVINILKRSYKSCG 326
A+EFF+ NGFPCPTHQNPSDHFLKTINKDF+++ E+G G+ EE I+IL ++YKS
Sbjct: 278 ADEFFSSNGFPCPTHQNPSDHFLKTINKDFEEDIEQGFG-GKKSKEEAIDILTKAYKSSD 336
Query: 327 IYEQVGSQVAEICKQNYGTLEKKRKHASFLTQCHVLTRRSFVNMYRDLGYYWFRLAIYIS 386
++QV +QV+EI KQ+ G L KKR HASFL QC VLTRRSFVNMYRDLGYYW RLAIY++
Sbjct: 337 NFQQVQTQVSEIYKQDGGAL-KKRSHASFLNQCLVLTRRSFVNMYRDLGYYWLRLAIYVA 395
Query: 387 MALGLATLFSNLGTGYRSIQARGSLLMFVASFITFMTIGGFPSFVEDMK 435
+ + L T+F N+G SI+ RGS+LM+VASF+TFM+IGGFPSFVEDMK
Sbjct: 396 LTVALGTIFHNVGYSNSSIKDRGSMLMYVASFLTFMSIGGFPSFVEDMK 444
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356546014|ref|XP_003541427.1| PREDICTED: ABC transporter G family member 11-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 598 bits (1541), Expect = e-168, Method: Compositional matrix adjust.
Identities = 297/413 (71%), Positives = 338/413 (81%), Gaps = 7/413 (1%)
Query: 29 NVNEDDGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDA 88
N E+ G L+WKD+ VT S GK GS SILE LTGYAKPG LLAIMGPSG GK+TLLD
Sbjct: 51 NEREEKGTCLSWKDVRVT-ASVGKNGSKSILEGLTGYAKPGQLLAIMGPSGCGKSTLLDT 109
Query: 89 LAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTM 148
LAGRLGS+TRQTG+ILING K+ALAYGTSAYVTQDDTL+TTLTV EAV+YSAQLQLPDTM
Sbjct: 110 LAGRLGSNTRQTGEILINGKKQALAYGTSAYVTQDDTLLTTLTVGEAVHYSAQLQLPDTM 169
Query: 149 PKSDKKERAEVTIREMGLQDAMNTRI-----RRLSGGQKRRVSISIEILTRPKLLFLDEP 203
PK +KKERA+ TIREMGLQDA+NTRI + +SGGQKRRVSI IEILTRP LLFLDEP
Sbjct: 170 PKEEKKERADFTIREMGLQDAINTRIGGWGVKGISGGQKRRVSICIEILTRPGLLFLDEP 229
Query: 204 TSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263
TSGLDSAASYYVM RIA L ++D + RT++ASIHQPSSEVFQLF NLCLLS+G+TVYFGP
Sbjct: 230 TSGLDSAASYYVMKRIATLDKKDDVHRTVVASIHQPSSEVFQLFDNLCLLSSGRTVYFGP 289
Query: 264 ATAANEFFAFNGFPCPTHQNPSDHFLKTINKDFQKEAEEGLADG-EIPTEEVINILKRSY 322
A+AA EFFA NGFPCP NPSDH LKTINKDF ++ E L IPTEE I IL SY
Sbjct: 290 ASAAKEFFASNGFPCPPLMNPSDHLLKTINKDFDQDTELNLGGTVTIPTEEAIRILVDSY 349
Query: 323 KSCGIYEQVGSQVAEICKQNYGTLEKKRKHASFLTQCHVLTRRSFVNMYRDLGYYWFRLA 382
KS + +V +VA + ++N + KKR+HA FL QC LT+RS +NMYRDLGYYW RLA
Sbjct: 350 KSSEMNHEVQKEVAVLTEKNTSSTNKKRRHAGFLNQCFALTKRSSINMYRDLGYYWLRLA 409
Query: 383 IYISMALGLATLFSNLGTGYRSIQARGSLLMFVASFITFMTIGGFPSFVEDMK 435
IYI++A+ LAT+F +LGT YRSIQ RGS LMFV+SF+TFMTIGGFPSFVEDMK
Sbjct: 410 IYIALAISLATIFYDLGTSYRSIQDRGSFLMFVSSFMTFMTIGGFPSFVEDMK 462
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224060415|ref|XP_002300188.1| white-brown-complex ABC transporter family [Populus trichocarpa] gi|222847446|gb|EEE84993.1| white-brown-complex ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 596 bits (1537), Expect = e-168, Method: Compositional matrix adjust.
Identities = 307/420 (73%), Positives = 343/420 (81%), Gaps = 25/420 (5%)
Query: 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDT 97
LTWKDL VT VSNGKKGS SIL+ LTGYA+PG LLAIMGPSG GK+TLLD LAGRLGS+T
Sbjct: 1 LTWKDLRVT-VSNGKKGSKSILQGLTGYAQPGELLAIMGPSGCGKSTLLDTLAGRLGSNT 59
Query: 98 RQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERA 157
RQTG ILINGHK+ LAYGTSAYVTQD+TLITTLTVKEAVYYSAQLQLPD+M +++KKERA
Sbjct: 60 RQTGDILINGHKQRLAYGTSAYVTQDETLITTLTVKEAVYYSAQLQLPDSMSRAEKKERA 119
Query: 158 EVTIREMGLQDAMNTRI-----RRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAAS 212
EVTIREMGLQDAMNTRI + LSGGQKRRVSI IEILT PKLLFLDEPTSGLDSAAS
Sbjct: 120 EVTIREMGLQDAMNTRIGGWGSKGLSGGQKRRVSICIEILTHPKLLFLDEPTSGLDSAAS 179
Query: 213 YYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANEFFA 272
YYVMS I + ++D RT+IASIHQPS EVFQLF +LCLLSAG+ VYFGPA+ ANEFFA
Sbjct: 180 YYVMSGIVRFDRKDENRRTVIASIHQPSGEVFQLFDSLCLLSAGKVVYFGPASQANEFFA 239
Query: 273 FNGFPCPTHQNPSDHFLKTINKDFQK---------------EAEEGLADGEIPTEEVINI 317
NGFPCPT QNPSDHFLKTINKDF+ + E+GL D I E IN
Sbjct: 240 LNGFPCPTLQNPSDHFLKTINKDFETVCFLIQCLALRYLWLDPEQGLEDA-ITAEVAINT 298
Query: 318 LKRSYKSCGIYEQVGSQVAEICK--QNYGTLEKKRKHASFLTQCHVLTRRSFVNMYRDLG 375
L ++YKS Y++V V EI + Q+ GTLE +R H+SFLTQC VLTRRSFVNMYRDLG
Sbjct: 299 LTKAYKSSDHYQKVKRLVTEIFRWIQDCGTLE-ERSHSSFLTQCLVLTRRSFVNMYRDLG 357
Query: 376 YYWFRLAIYISMALGLATLFSNLGTGYRSIQARGSLLMFVASFITFMTIGGFPSFVEDMK 435
YYW R+AIY+++ALGLATLF NLG+ SIQ RGSLLMF+ASF+TFMTIGGFPSFVEDMK
Sbjct: 358 YYWLRVAIYVALALGLATLFYNLGSDNDSIQDRGSLLMFIASFLTFMTIGGFPSFVEDMK 417
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356524824|ref|XP_003531028.1| PREDICTED: ABC transporter G family member 11-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 593 bits (1528), Expect = e-167, Method: Compositional matrix adjust.
Identities = 296/410 (72%), Positives = 341/410 (83%), Gaps = 7/410 (1%)
Query: 32 EDDGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAG 91
E+ G+ LTWKD+ VT SN K GS SIL LTGYAKPG LLAIMGPSG GK+TLLD+LAG
Sbjct: 61 EEIGICLTWKDVWVT-ASNRKSGSKSILHGLTGYAKPGQLLAIMGPSGCGKSTLLDSLAG 119
Query: 92 RLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKS 151
RLGS+TRQTG+ILINGHK+AL YGTSAYVTQDDTL+TTLTV+EAV+YSAQLQLPDTM K
Sbjct: 120 RLGSNTRQTGEILINGHKQALCYGTSAYVTQDDTLLTTLTVREAVHYSAQLQLPDTMSKE 179
Query: 152 DKKERAEVTIREMGLQDAMNTRI-----RRLSGGQKRRVSISIEILTRPKLLFLDEPTSG 206
+KKERA+ TIREMGLQDA+NTRI + +SGGQKRRVSI IEILTRPKLLFLDEPTSG
Sbjct: 180 EKKERADFTIREMGLQDAINTRIGGWGCKGISGGQKRRVSICIEILTRPKLLFLDEPTSG 239
Query: 207 LDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATA 266
LDSAASYYVM RIA L Q D I RT+IASIHQPSSEVFQLFH+LCLLS+G+TVYFGPA+A
Sbjct: 240 LDSAASYYVMKRIAALAQNDHIQRTVIASIHQPSSEVFQLFHSLCLLSSGKTVYFGPASA 299
Query: 267 ANEFFAFNGFPCPTHQNPSDHFLKTINKDFQKEAEEGLADGE-IPTEEVINILKRSYKSC 325
A EFFA NGFPCP NPSDH LKTINKDF ++ E GLA E I TEEVI+IL SYKS
Sbjct: 300 AKEFFASNGFPCPPLMNPSDHLLKTINKDFDQDIEAGLAGTENILTEEVIHILVNSYKSS 359
Query: 326 GIYEQVGSQVAEICKQNYGTLEKKRKHASFLTQCHVLTRRSFVNMYRDLGYYWFRLAIYI 385
++V ++VA + K++ +L+ K+ +A FL QC VLT+RSF+NMYRDLGYYW RL IYI
Sbjct: 360 ERNQEVQNEVALLSKKDTSSLDMKKGNAGFLNQCLVLTKRSFINMYRDLGYYWLRLVIYI 419
Query: 386 SMALGLATLFSNLGTGYRSIQARGSLLMFVASFITFMTIGGFPSFVEDMK 435
++A+ LAT+F +LGT Y SI+ RGSL+ F+ FITFMTIGGFPSFVE MK
Sbjct: 420 ALAITLATVFYDLGTSYDSIKDRGSLVAFINGFITFMTIGGFPSFVEVMK 469
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147782239|emb|CAN60999.1| hypothetical protein VITISV_012972 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 592 bits (1526), Expect = e-166, Method: Compositional matrix adjust.
Identities = 300/426 (70%), Positives = 347/426 (81%), Gaps = 27/426 (6%)
Query: 32 EDDGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAG 91
ED GVFLTW+DL VT VSNGK GS SIL+ LTGYA+PG +LAIMGPSG GK+TLLDALAG
Sbjct: 41 EDGGVFLTWEDLWVT-VSNGKSGSRSILQGLTGYARPGEVLAIMGPSGCGKSTLLDALAG 99
Query: 92 -----------------RLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKE 134
RLGS+T Q+G IL+NGHK+AL+YGTSAYVTQDDTLITTLTV E
Sbjct: 100 AMNVESEATSVVPRINRRLGSNTSQSGIILVNGHKQALSYGTSAYVTQDDTLITTLTVGE 159
Query: 135 AVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRI-----RRLSGGQKRRVSISI 189
AVYYSA LQLPD+M KS KKERA++TIREMGLQD++NTRI + +SGGQKRRVSI I
Sbjct: 160 AVYYSALLQLPDSMSKSXKKERADMTIREMGLQDSINTRIGGWGVKGISGGQKRRVSICI 219
Query: 190 EILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHN 249
EILT PKLLFLDEPTSGLDSAASYYVMSRIA L ++ G RTII SIHQPSSEVF LF N
Sbjct: 220 EILTHPKLLFLDEPTSGLDSAASYYVMSRIAGLDRQHG--RTIITSIHQPSSEVFALFDN 277
Query: 250 LCLLSAGQTVYFGPATAANEFFAFNGFPCPTHQNPSDHFLKTINKDFQKEAEEGLADGEI 309
LCLLS+G+TVYFGPA AA+EFF+ NGFPCPTHQNPSDHFLKTINKDF+++ E+G G+
Sbjct: 278 LCLLSSGRTVYFGPAHAADEFFSSNGFPCPTHQNPSDHFLKTINKDFEEDIEQGFG-GKK 336
Query: 310 PTEEVINILKRSYKSCGIYEQVGSQVAEICKQNYGTLEKKRKHASFLTQCHVLTRRSFVN 369
EE I+IL ++YKS ++QV +QV+EI KQ+ G L KKR HASFL QC VLTRRSFVN
Sbjct: 337 SKEEAIDILTKAYKSSDNFQQVQTQVSEIYKQDGGAL-KKRSHASFLNQCLVLTRRSFVN 395
Query: 370 MYRDLGYYWFRLAIYISMALGLATLFSNLGTGYRSIQARGSLLMFVASFITFMTIGGFPS 429
MYRDLGYYW RLAIY+++ + L T+F N+G SI+ RGS+LM+VASF+TFM+IGGFPS
Sbjct: 396 MYRDLGYYWLRLAIYVALTVALGTIFHNVGYSNSSIKDRGSMLMYVASFLTFMSIGGFPS 455
Query: 430 FVEDMK 435
FVEDMK
Sbjct: 456 FVEDMK 461
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296088208|emb|CBI35723.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 590 bits (1521), Expect = e-166, Method: Compositional matrix adjust.
Identities = 297/439 (67%), Positives = 353/439 (80%), Gaps = 15/439 (3%)
Query: 8 ITETNEALEMESSNKTANSLI-NVNED-----DGVFLTWKDLTVTIVSNGKKGSSSILED 61
+ +++ ++E + N++ N++ D +GVFLTWKDL VT V + + G IL+
Sbjct: 233 VKTSSQKPDVEQPKQNKNNVTRNIDMDFTSKSNGVFLTWKDLWVT-VPDQQSGRRPILQR 291
Query: 62 LTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVT 121
LTGYA+PG +LAIMGPSG GK+TLLDALAGRLGS+TRQ G+ILING K+ LA+GTSAYVT
Sbjct: 292 LTGYAQPGEVLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKQRLAFGTSAYVT 351
Query: 122 QDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRI-----RR 176
QDDTL+TTLTV+EAV+YSAQLQLP +MP S KKERAE+TI EMGLQD + TRI +
Sbjct: 352 QDDTLMTTLTVREAVHYSAQLQLPGSMPTSAKKERAEMTICEMGLQDCIETRIGGWGKKG 411
Query: 177 LSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASI 236
LSGGQKRRVSI IEILTRPKLLFLDEPTSGLDSAASY+VM RI KL R+GI T+IASI
Sbjct: 412 LSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMDRIVKLAHREGI--TVIASI 469
Query: 237 HQPSSEVFQLFHNLCLLSAGQTVYFGPATAANEFFAFNGFPCPTHQNPSDHFLKTINKDF 296
HQPSSEVF+LFHNLCLLS+G+TVYFGPA+ ANEFFA NGFPCP+ +NPSDH+L+TINKDF
Sbjct: 470 HQPSSEVFELFHNLCLLSSGKTVYFGPASMANEFFAKNGFPCPSLRNPSDHYLRTINKDF 529
Query: 297 QKEAEEGLADGEIPTEEVINILKRSYKSCGIYEQVGSQVAEICKQNYGTLEKKRKHASFL 356
+ EEGL G TEE INIL R+YKS +QV +V+EIC+Q G LEKK ASF
Sbjct: 530 DLDIEEGLG-GATSTEEAINILVRAYKSSETCQQVQGRVSEICQQKGGVLEKKGSQASFA 588
Query: 357 TQCHVLTRRSFVNMYRDLGYYWFRLAIYISMALGLATLFSNLGTGYRSIQARGSLLMFVA 416
TQC VLT+RSFVNMYRDLGYYW RLAIYI++ L + T+F ++G Y SIQARGS+LMFVA
Sbjct: 589 TQCLVLTKRSFVNMYRDLGYYWLRLAIYIALCLCVGTIFYDIGFSYGSIQARGSMLMFVA 648
Query: 417 SFITFMTIGGFPSFVEDMK 435
+F+TFM IGGFPSFVEDMK
Sbjct: 649 AFLTFMAIGGFPSFVEDMK 667
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359497424|ref|XP_002267117.2| PREDICTED: ABC transporter G family member 11-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 590 bits (1520), Expect = e-166, Method: Compositional matrix adjust.
Identities = 297/439 (67%), Positives = 353/439 (80%), Gaps = 15/439 (3%)
Query: 8 ITETNEALEMESSNKTANSLI-NVNED-----DGVFLTWKDLTVTIVSNGKKGSSSILED 61
+ +++ ++E + N++ N++ D +GVFLTWKDL VT V + + G IL+
Sbjct: 40 VKTSSQKPDVEQPKQNKNNVTRNIDMDFTSKSNGVFLTWKDLWVT-VPDQQSGRRPILQR 98
Query: 62 LTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVT 121
LTGYA+PG +LAIMGPSG GK+TLLDALAGRLGS+TRQ G+ILING K+ LA+GTSAYVT
Sbjct: 99 LTGYAQPGEVLAIMGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKQRLAFGTSAYVT 158
Query: 122 QDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRI-----RR 176
QDDTL+TTLTV+EAV+YSAQLQLP +MP S KKERAE+TI EMGLQD + TRI +
Sbjct: 159 QDDTLMTTLTVREAVHYSAQLQLPGSMPTSAKKERAEMTICEMGLQDCIETRIGGWGKKG 218
Query: 177 LSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASI 236
LSGGQKRRVSI IEILTRPKLLFLDEPTSGLDSAASY+VM RI KL R+GI T+IASI
Sbjct: 219 LSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMDRIVKLAHREGI--TVIASI 276
Query: 237 HQPSSEVFQLFHNLCLLSAGQTVYFGPATAANEFFAFNGFPCPTHQNPSDHFLKTINKDF 296
HQPSSEVF+LFHNLCLLS+G+TVYFGPA+ ANEFFA NGFPCP+ +NPSDH+L+TINKDF
Sbjct: 277 HQPSSEVFELFHNLCLLSSGKTVYFGPASMANEFFAKNGFPCPSLRNPSDHYLRTINKDF 336
Query: 297 QKEAEEGLADGEIPTEEVINILKRSYKSCGIYEQVGSQVAEICKQNYGTLEKKRKHASFL 356
+ EEGL G TEE INIL R+YKS +QV +V+EIC+Q G LEKK ASF
Sbjct: 337 DLDIEEGLG-GATSTEEAINILVRAYKSSETCQQVQGRVSEICQQKGGVLEKKGSQASFA 395
Query: 357 TQCHVLTRRSFVNMYRDLGYYWFRLAIYISMALGLATLFSNLGTGYRSIQARGSLLMFVA 416
TQC VLT+RSFVNMYRDLGYYW RLAIYI++ L + T+F ++G Y SIQARGS+LMFVA
Sbjct: 396 TQCLVLTKRSFVNMYRDLGYYWLRLAIYIALCLCVGTIFYDIGFSYGSIQARGSMLMFVA 455
Query: 417 SFITFMTIGGFPSFVEDMK 435
+F+TFM IGGFPSFVEDMK
Sbjct: 456 AFLTFMAIGGFPSFVEDMK 474
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357476291|ref|XP_003608431.1| White-brown-complex ABC transporter family [Medicago truncatula] gi|355509486|gb|AES90628.1| White-brown-complex ABC transporter family [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 586 bits (1510), Expect = e-165, Method: Compositional matrix adjust.
Identities = 302/437 (69%), Positives = 353/437 (80%), Gaps = 17/437 (3%)
Query: 14 ALEMESSNKT--ANSLINVNEDDGVFLTWKDLTVTI-VSNGKKGSS-SILEDLTGYAKPG 69
ALE+ES+ + A+ +N E+ GV LTWKDL VT+ S GK S SIL+ LTGYAKP
Sbjct: 2 ALEIESTREEVGASKKMNGGEEKGVCLTWKDLWVTVSASTGKTNESKSILQGLTGYAKPA 61
Query: 70 HLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITT 129
LLAIMGPSG GK+TLLDALAGRLGS+TRQ+G ILING+K+ALAYGTSAYVTQDDTL+TT
Sbjct: 62 QLLAIMGPSGCGKSTLLDALAGRLGSNTRQSGDILINGNKQALAYGTSAYVTQDDTLLTT 121
Query: 130 LTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRI-----RRLSGGQKRR 184
LTVKEAVYYSAQLQLPDTM +KKERA+ TIREMGLQDA+NTRI + +SGGQKRR
Sbjct: 122 LTVKEAVYYSAQLQLPDTMSNEEKKERADFTIREMGLQDAINTRIGGWGVKGISGGQKRR 181
Query: 185 VSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVF 244
VSISIEILTRP+LLFLDEPTSGLDSAASYYVM RIA L ++DGI RTI+ASIHQPS+EVF
Sbjct: 182 VSISIEILTRPRLLFLDEPTSGLDSAASYYVMKRIASLDKKDGIQRTIVASIHQPSTEVF 241
Query: 245 QLFHNLCLLSAGQTVYFGPATAANEFFAFNGFPCPTHQNPSDHFLKTINKDFQKEAEEGL 304
QLFHNLCLLS+G+TVYFGPA+AA+EFFA NGFPCP QNPSDH LKTINKDF ++ E L
Sbjct: 242 QLFHNLCLLSSGKTVYFGPASAASEFFASNGFPCPPLQNPSDHLLKTINKDFDQDIEMDL 301
Query: 305 AD-GEIPTEEVINILKRSYKSCGIYEQVGSQVAEIC-----KQNYGTLEKKRKHASFLTQ 358
++ G I E+ I+IL SY S +++ ++V+ + K N T K+KHA FL Q
Sbjct: 302 SETGTISIEQAIDILVSSYSSSERNQEIKNEVSVLSIVLSLKDNNSTY--KKKHAGFLNQ 359
Query: 359 CHVLTRRSFVNMYRDLGYYWFRLAIYISMALGLATLFSNLGTGYRSIQARGSLLMFVASF 418
C VLTRRSFVNM+RDLGYYW RL IYI++A+ LAT+F++L SIQ RGSLLMFV SF
Sbjct: 360 CLVLTRRSFVNMFRDLGYYWLRLGIYIALAISLATVFNDLDKSNGSIQDRGSLLMFVFSF 419
Query: 419 ITFMTIGGFPSFVEDMK 435
+TFMTIGGFPS+VEDMK
Sbjct: 420 LTFMTIGGFPSYVEDMK 436
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 449 | ||||||
| TAIR|locus:2030898 | 703 | ABCG11 "ATP-binding cassette G | 0.873 | 0.557 | 0.544 | 2.7e-107 | |
| TAIR|locus:2092960 | 691 | ABCG15 "ATP-binding cassette G | 0.930 | 0.604 | 0.460 | 3.7e-96 | |
| TAIR|locus:2033939 | 678 | ABCG13 "ATP-binding cassette G | 0.581 | 0.384 | 0.494 | 6.9e-96 | |
| TAIR|locus:2033899 | 687 | ABCG12 "ATP-binding cassette G | 0.623 | 0.407 | 0.515 | 5.3e-72 | |
| TAIR|locus:2046203 | 730 | ABCG3 "ATP-binding cassette G3 | 0.877 | 0.539 | 0.379 | 2.1e-68 | |
| DICTYBASE|DDB_G0269214 | 793 | abcG1 "ABC transporter G famil | 0.668 | 0.378 | 0.405 | 2.6e-63 | |
| CGD|CAL0002254 | 579 | orf19.3120 [Candida albicans ( | 0.559 | 0.433 | 0.453 | 8.8e-59 | |
| UNIPROTKB|Q5A0X6 | 579 | CaO19.10632 "Putative uncharac | 0.559 | 0.433 | 0.453 | 8.8e-59 | |
| MGI|MGI:1347061 | 657 | Abcg2 "ATP-binding cassette, s | 0.937 | 0.640 | 0.346 | 1.1e-55 | |
| UNIPROTKB|E1C5B1 | 665 | ABCG2 "Uncharacterized protein | 0.853 | 0.575 | 0.354 | 7.8e-55 |
| TAIR|locus:2030898 ABCG11 "ATP-binding cassette G11" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1061 (378.5 bits), Expect = 2.7e-107, P = 2.7e-107
Identities = 227/417 (54%), Positives = 292/417 (70%)
Query: 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDT 97
LTW+DLTV +V+ G + ++LE LTGYA+PG L A+MGPSGSGK+T+LDALA RL ++
Sbjct: 50 LTWQDLTV-MVTMGDGETQNVLEGLTGYAEPGSLTALMGPSGSGKSTMLDALASRLAANA 108
Query: 98 RQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERA 157
+G +L+NG K L++GT+AYVTQDD LI TLTV+E ++YSA+++LPD M +S+K+
Sbjct: 109 FLSGTVLLNGRKTKLSFGTAAYVTQDDNLIGTLTVRETIWYSARVRLPDKMLRSEKRALV 168
Query: 158 EVTIREMGLQDAMNT-----RIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAAS 212
E TI EMGLQD +T +R +SGG+KRRVSI++EIL RP+LLFLDEPTSGLDSA++
Sbjct: 169 ERTIIEMGLQDCADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSASA 228
Query: 213 YYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANEFFA 272
++V + L RDG RT+IASIHQPSSEVF+LF L LLS G+TVYFG A+ A EFFA
Sbjct: 229 FFVTQTLRALS-RDG--RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGQASDAYEFFA 285
Query: 273 FNGFPCPTHQNPSDHFLKTINKDFQK-------------EAEEGLADGEIPTEEVINILK 319
GFPCP +NPSDHFL+ IN DF K EA + + +I T E I +L
Sbjct: 286 QAGFPCPALRNPSDHFLRCINSDFDKVRATLKGSMKLRFEASDDPLE-KITTAEAIRLLV 344
Query: 320 RSYKSCGIYEQVGSQVAEICKQNYGT-LEKKRKHASFLTQCHVLTRRSFVNMYRDLGYYW 378
Y + Y ++V EI Q GT L+ ASFL Q + LT+RSF+NM RD GYYW
Sbjct: 345 DYYHTSDYYYTAKAKVEEI-SQFKGTILDSGGSQASFLLQTYTLTKRSFINMSRDFGYYW 403
Query: 379 FRLAIYISMALGLATLFSNLGTGYRSIQARGSLLMFVASFITFMTIGGFPSFVEDMK 435
RL IYI + + + T++ N+GT Y +I ARGS FV F+TFM+IGGFPSFVEDMK
Sbjct: 404 LRLLIYILVTVCIGTIYLNVGTSYSAILARGSCASFVFGFVTFMSIGGFPSFVEDMK 460
|
|
| TAIR|locus:2092960 ABCG15 "ATP-binding cassette G15" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 956 (341.6 bits), Expect = 3.7e-96, P = 3.7e-96
Identities = 203/441 (46%), Positives = 288/441 (65%)
Query: 15 LEMESSNKTANSLINVNE-DDGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLA 73
+E+E S+ L + E G +L W+DLTV I + + +L+ L GYA+PG ++A
Sbjct: 1 MELEGSSSGRRQLPSKLEMSRGAYLAWEDLTVVIPNFSDGPTRRLLQRLNGYAEPGRIMA 60
Query: 74 IMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVK 133
IMGPSGSGK+TLLD+LAGRL + TG +L+NG K L YG AYVTQ+D L+ TLTV+
Sbjct: 61 IMGPSGSGKSTLLDSLAGRLARNVVMTGNLLLNGKKARLDYGLVAYVTQEDVLLGTLTVR 120
Query: 134 EAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAM-----NTRIRRLSGGQKRRVSIS 188
E + YSA L+LP M K + + E TI E+GLQD N R +SGG+++RVSI+
Sbjct: 121 ETITYSAHLRLPSDMSKEEVSDIVEGTIMELGLQDCSDRVIGNWHARGVSGGERKRVSIA 180
Query: 189 IEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFH 248
+EILTRP++LFLDEPTSGLDSA++++V+ + + RDG RT+I+S+HQPSSEVF LF
Sbjct: 181 LEILTRPQILFLDEPTSGLDSASAFFVIQALRNIA-RDG--RTVISSVHQPSSEVFALFD 237
Query: 249 NLCLLSAGQTVYFGPATAANEFFAFNGFPCPTHQNPSDHFLKTINKDFQK-----EAEEG 303
+L LLS+G++VYFG A +A EFFA +GFPCP +NPSDHFL+ IN DF + +
Sbjct: 238 DLFLLSSGESVYFGEAKSAVEFFAESGFPCPKKRNPSDHFLRCINSDFDTVTATLKGSQR 297
Query: 304 LADGEIPTEEVINI--------LKRSYKSCGIYEQVGSQVAEICKQNYGTLE-KKRKHAS 354
+ + ++ ++N+ L +YK + S++ E+ +E +K A+
Sbjct: 298 IQETPATSDPLMNLATSVIKARLVENYKRSKYAKSAKSRIRELSNIEGLEMEIRKGSEAT 357
Query: 355 FLTQCHVLTRRSFVNMYRDLGYYWFRLAIYISMALGLATLFSNLGTGYRSIQARGSLLMF 414
+ Q LT RSF+NM RD+GYYW R+ YI +++ + T+F ++G Y SI AR S F
Sbjct: 358 WWKQLRTLTARSFINMCRDVGYYWTRIISYIVVSISVGTIFYDVGYSYTSILARVSCGGF 417
Query: 415 VASFITFMTIGGFPSFVEDMK 435
+ F+TFM+IGGFPSF+E+MK
Sbjct: 418 ITGFMTFMSIGGFPSFLEEMK 438
|
|
| TAIR|locus:2033939 ABCG13 "ATP-binding cassette G13" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 713 (256.0 bits), Expect = 6.9e-96, Sum P(2) = 6.9e-96
Identities = 133/269 (49%), Positives = 194/269 (72%)
Query: 33 DDGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGR 92
+ +++ W+DLTV I + G+ + +L + G +P +LAIMGPSGSGK+TLLDALAGR
Sbjct: 5 EGAMYVAWEDLTVVIPNFGEGATKRLLNGVNGCGEPNRILAIMGPSGSGKSTLLDALAGR 64
Query: 93 LGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSD 152
L + +GK+L+NG K+ L +G +AYVTQ+D L+ TLTV+E++ YSA L+LP + + +
Sbjct: 65 LAGNVVMSGKVLVNGKKRRLDFGAAAYVTQEDVLLGTLTVRESISYSAHLRLPSKLTREE 124
Query: 153 KKERAEVTIREMGLQDAM-----NTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGL 207
+ E TI +MGL++ N +R +SGG+K+R+SI++E+LT+P LLFLDEPTSGL
Sbjct: 125 ISDIVEATITDMGLEECSDRTIGNWHLRGISGGEKKRLSIALEVLTKPSLLFLDEPTSGL 184
Query: 208 DSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267
DSA++++V+ + + G+T+++SIHQPS EVF LF +L LLS G+TVYFG A +A
Sbjct: 185 DSASAFFVVQILRNIASS---GKTVVSSIHQPSGEVFALFDDLLLLSGGETVYFGEAESA 241
Query: 268 NEFFAFNGFPCPTHQNPSDHFLKTINKDF 296
+FF GFPCP+ +NPSDHFL+ +N DF
Sbjct: 242 TKFFGEAGFPCPSRRNPSDHFLRCVNSDF 270
|
|
| TAIR|locus:2033899 ABCG12 "ATP-binding cassette G12" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 728 (261.3 bits), Expect = 5.3e-72, P = 5.3e-72
Identities = 148/287 (51%), Positives = 201/287 (70%)
Query: 15 LEMESSNKTANSLINVNEDDGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAI 74
+E+ES++ G +L W+DLTV I + + +L+ L G+A+PG ++AI
Sbjct: 1 MELESTSNGRRPPPPAEIGRGAYLAWEDLTVVIPNFSGGPTRRLLDGLNGHAEPGRIMAI 60
Query: 75 MGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKE 134
MGPSGSGK+TLLD+LAGRL + TG +L+NG K L YG AYVTQ+D L+ TLTV+E
Sbjct: 61 MGPSGSGKSTLLDSLAGRLARNVIMTGNLLLNGKKARLDYGLVAYVTQEDILMGTLTVRE 120
Query: 135 AVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAM-----NTRIRRLSGGQKRRVSISI 189
+ YSA L+L + K + + E TI E+GLQD N R +SGG+++RVS+++
Sbjct: 121 TITYSAHLRLSSDLTKEEVNDIVEGTIIELGLQDCADRVIGNWHSRGVSGGERKRVSVAL 180
Query: 190 EILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHN 249
EILTRP++LFLDEPTSGLDSA++++V+ + + RDG GRT+++SIHQPSSEVF LF +
Sbjct: 181 EILTRPQILFLDEPTSGLDSASAFFVIQALRNIA-RDG-GRTVVSSIHQPSSEVFALFDD 238
Query: 250 LCLLSAGQTVYFGPATAANEFFAFNGFPCPTHQNPSDHFLKTINKDF 296
L LLS+G+TVYFG + A EFFA GFPCP +NPSDHFL+ IN DF
Sbjct: 239 LFLLSSGETVYFGESKFAVEFFAEAGFPCPKKRNPSDHFLRCINSDF 285
|
|
| TAIR|locus:2046203 ABCG3 "ATP-binding cassette G3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
Identities = 158/416 (37%), Positives = 239/416 (57%)
Query: 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLG 94
G + WKDLTVT+ +K S +++ GYA PG + IMGP+ SGK+TLL ALAGRL
Sbjct: 111 GASIAWKDLTVTMKGK-RKYSDKVVKSSNGYAFPGTMTVIMGPAKSGKSTLLRALAGRLP 169
Query: 95 SDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKK 154
+ G++ +NG K + YG+ +V ++ LI +LTV+E +YYSA LQLP + K+
Sbjct: 170 PSAKMYGEVFVNGSKSHMPYGSYGFVERETQLIGSLTVREFLYYSALLQLPGFL--FQKR 227
Query: 155 ERAEVTIREMGLQDAMNTRI------RRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208
E I+ M L D N I + L G++RRVSI+ E++ RP +LF+DEP LD
Sbjct: 228 SVVEDAIQAMSLSDYANKLIGGHCYMKGLRSGERRRVSIARELVMRPHILFIDEPLYHLD 287
Query: 209 SAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268
S ++ +M + KL +G T++ +I+Q S+EVF LF +CLLS G T++FG A
Sbjct: 288 SVSALLMMVTLKKLAS---MGCTLVFTIYQSSTEVFGLFDRICLLSNGNTLFFGETLACL 344
Query: 269 EFFAFNGFPCPTHQNPSDHFLKTINKDFQK--------EAEEG-LADGEIPTEEVINILK 319
+ F+ GFPCP Q+PSDHFL+ IN DF + + + G + + T I L+
Sbjct: 345 QHFSNAGFPCPIMQSPSDHFLRAINTDFDRIIAMCKNWQDDNGDFSAVNMDTAVAIRTLE 404
Query: 320 RSYKSCGIYEQVGSQVAEICKQNYGTLEKKRKHASFLTQCHVLTRRSFVNMYRDLGYYWF 379
+YKS + V + + ++ ++ GT K + A T+ VLT RS + M R+ YYW
Sbjct: 405 ATYKSSADADSVEAMIIKLTERE-GTQLKSKGKAGAATRVAVLTWRSLLVMSREWKYYWL 463
Query: 380 RLAIYISMALGLATLFSNLGTGYRSIQARGSLLMFVASFITFMTIGGFPSFVEDMK 435
RL +Y+ + L + TL+S LG S+ R + + SF + + I G PS ++++K
Sbjct: 464 RLILYMILTLSIGTLYSGLGHSLSSVATRVAAVFVFVSFASLLGIAGIPSLLKEIK 519
|
|
| DICTYBASE|DDB_G0269214 abcG1 "ABC transporter G family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 562 (202.9 bits), Expect = 2.6e-63, Sum P(2) = 2.6e-63
Identities = 131/323 (40%), Positives = 189/323 (58%)
Query: 10 ETNEALEMESSNKTANSLINVNEDDGVF-----LTWKDLT--VTIVSNGKKG--SSSILE 60
+ N +N N+L N+ F ++KD+ V I GKK S IL
Sbjct: 81 QNNNNNNNNQNNNIINNLNKKNKKRSTFKNRIDFSFKDINHYVQITEKGKKKKISKQILT 140
Query: 61 DLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKA--LAYGTSA 118
++ G+ + G + AIMGPSG+GKTTLLD LA RL + +G + +NG+K +
Sbjct: 141 NINGHIESGTIFAIMGPSGAGKTTLLDILAHRL--NINGSGTMYLNGNKSDFNIFKKLCG 198
Query: 119 YVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNT------ 172
YVTQ D+L+ +LTV+E + + AQL++P +P +K +R + I EMGL +T
Sbjct: 199 YVTQSDSLMPSLTVRETLNFYAQLKMPRDVPLKEKLQRVQDIIDEMGLNRCADTLVGTAD 258
Query: 173 -RIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRT 231
+IR +SGG++RRV+ISIE+LT P ++ LDEPTSGLD++ S+YVMS + KL + GRT
Sbjct: 259 NKIRGISGGERRRVTISIELLTGPSVILLDEPTSGLDASTSFYVMSALKKLAKS---GRT 315
Query: 232 IIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANEFFAFNGFPCPTHQNPSDHFLKT 291
II +IHQP S ++ +F NL LL G T+Y+G A A E+F NG+ C NP+D FL
Sbjct: 316 IICTIHQPRSNIYDMFDNLLLLGDGNTIYYGKANKALEYFNANGYHCSEKTNPADFFLDL 375
Query: 292 INKDFQKEAEEGLADGEIPTEEV 314
IN + +A+ D EE+
Sbjct: 376 INTQVEDQADSDDDDYNDEEEEI 398
|
|
| CGD|CAL0002254 orf19.3120 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 496 (179.7 bits), Expect = 8.8e-59, Sum P(2) = 8.8e-59
Identities = 123/271 (45%), Positives = 171/271 (63%)
Query: 39 TWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLG--SD 96
+W ++++T+ NGK +IL+D+ G G +LAIMGPSG GK+TLL+ LA R S
Sbjct: 7 SWSNISLTL-QNGK----TILDDIYGSVSAGEMLAIMGPSGCGKSTLLNVLAYRTSPRSS 61
Query: 97 TRQTGKILINGHKKAL--AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKK 154
T + G I IN + L S+YV Q+D+LI +LTV E V YSAQ D K+ KK
Sbjct: 62 TLEGG-IFINNERATLNKIKQLSSYVEQEDSLIGSLTVSETVDYSAQFAGID---KAHKK 117
Query: 155 ERAEVTIREMGLQ-DAMN---TRIRR-LSGGQKRRVSISIEILTRPKLLFLDEPTSGLDS 209
E TI+ +GL+ AM+ T I++ +SGGQKRRVSI+ +I+T P +LFLDEPTSGLDS
Sbjct: 118 ELVSKTIKSLGLEGQAMSKIGTPIQKGISGGQKRRVSIASQIITSPSILFLDEPTSGLDS 177
Query: 210 AASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANE 269
AS V+S I K+ +R+ + II SIHQPS+ F+LF + LS G+TVY G + +
Sbjct: 178 VASREVISTIKKIAKRENM--VIICSIHQPSTYTFELFDKVMFLSKGRTVYNGAVSNVVK 235
Query: 270 FFAFNGFPCPTHQNPSDHFLKTINKDFQKEA 300
+F G P + NP+++ L IN DFQ ++
Sbjct: 236 YFNSIGHTMPPYINPAEYVLDLINTDFQGDS 266
|
|
| UNIPROTKB|Q5A0X6 CaO19.10632 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)] | Back alignment and assigned GO terms |
|---|
Score = 496 (179.7 bits), Expect = 8.8e-59, Sum P(2) = 8.8e-59
Identities = 123/271 (45%), Positives = 171/271 (63%)
Query: 39 TWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLG--SD 96
+W ++++T+ NGK +IL+D+ G G +LAIMGPSG GK+TLL+ LA R S
Sbjct: 7 SWSNISLTL-QNGK----TILDDIYGSVSAGEMLAIMGPSGCGKSTLLNVLAYRTSPRSS 61
Query: 97 TRQTGKILINGHKKAL--AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKK 154
T + G I IN + L S+YV Q+D+LI +LTV E V YSAQ D K+ KK
Sbjct: 62 TLEGG-IFINNERATLNKIKQLSSYVEQEDSLIGSLTVSETVDYSAQFAGID---KAHKK 117
Query: 155 ERAEVTIREMGLQ-DAMN---TRIRR-LSGGQKRRVSISIEILTRPKLLFLDEPTSGLDS 209
E TI+ +GL+ AM+ T I++ +SGGQKRRVSI+ +I+T P +LFLDEPTSGLDS
Sbjct: 118 ELVSKTIKSLGLEGQAMSKIGTPIQKGISGGQKRRVSIASQIITSPSILFLDEPTSGLDS 177
Query: 210 AASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANE 269
AS V+S I K+ +R+ + II SIHQPS+ F+LF + LS G+TVY G + +
Sbjct: 178 VASREVISTIKKIAKRENM--VIICSIHQPSTYTFELFDKVMFLSKGRTVYNGAVSNVVK 235
Query: 270 FFAFNGFPCPTHQNPSDHFLKTINKDFQKEA 300
+F G P + NP+++ L IN DFQ ++
Sbjct: 236 YFNSIGHTMPPYINPAEYVLDLINTDFQGDS 266
|
|
| MGI|MGI:1347061 Abcg2 "ATP-binding cassette, sub-family G (WHITE), member 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 574 (207.1 bits), Expect = 1.1e-55, P = 1.1e-55
Identities = 162/468 (34%), Positives = 254/468 (54%)
Query: 8 ITETNEALEMESSNKTANSLINVNED------DGVFLTWKDLTVTI-VSNG----KKGSS 56
++ +N+ + + S + N L N +G L++ +T + V +G K
Sbjct: 1 MSSSNDHVLVPMSQRNNNGLPRTNSRAVRTLAEGDVLSFHHITYRVKVKSGFLVRKTVEK 60
Query: 57 SILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQ-TGKILINGHKKALAYG 115
IL D+ G KPG L AI+GP+G GK++LLD LA R D + +G +LING + +
Sbjct: 61 EILSDINGIMKPG-LNAILGPTGGGKSSLLDVLAAR--KDPKGLSGDVLINGAPQPAHFK 117
Query: 116 T-SAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTR- 173
S YV QDD ++ TLTV+E + +SA L+LP TM +K ER I+E+GL+ +++
Sbjct: 118 CCSGYVVQDDVVMGTLTVRENLQFSAALRLPTTMKNHEKNERINTIIKELGLEKVADSKV 177
Query: 174 ----IRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIG 229
IR +SGG+++R SI +E++T P +LFLDEPT+GLDS+ + V+ + ++ ++ G
Sbjct: 178 GTQFIRGISGGERKRTSIGMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQ---G 234
Query: 230 RTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANEFFAFNGFPCPTHQNPSDHFL 289
RTII SIHQP +F+LF +L LL++G+ V+ GPA A E+FA G+ C + NP+D FL
Sbjct: 235 RTIIFSIHQPRYSIFKLFDSLTLLASGKLVFHGPAQKALEYFASAGYHCEPYNNPADFFL 294
Query: 290 KTINKD-----FQKEAEEGLADG-EIPTE---EVINILKRSYKSCGIYEQVGSQVAEICK 340
IN D +E ++ A+ E P++ VI L Y + IY G AE+
Sbjct: 295 DVINGDSSAVMLNREEQDNEANKTEEPSKGEKPVIENLSEFYINSAIY---GETKAEL-D 350
Query: 341 QNYGTLEKKR----KHASFLTQ-CHVL---TRRSFVNMYRDLGYYWFRLAIYISMALGLA 392
Q G EKK K ++T CH L RRSF N+ + +L + + + L +
Sbjct: 351 QLPGAQEKKGTSAFKEPVYVTSFCHQLRWIARRSFKNLLGNPQASVAQLIVTVILGLIIG 410
Query: 393 TLFSNLGTGYRSIQARGSLLMFVASFITFMTIGGFPSFVEDMKKCLFL 440
++ +L +Q R +L F+ + F ++ FV + K LF+
Sbjct: 411 AIYFDLKYDAAGMQNRAGVLFFLTTNQCFSSVSAVELFVVEKK--LFI 456
|
|
| UNIPROTKB|E1C5B1 ABCG2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
Identities = 145/409 (35%), Positives = 230/409 (56%)
Query: 52 KKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKA 111
K IL ++ G KPG L AI+GP+GSGK++LLD LA R +G++LI+G +
Sbjct: 59 KTVEKKILHNVYGIMKPG-LNAILGPTGSGKSSLLDVLAARK-DPAGLSGEVLIDGIPQP 116
Query: 112 LAYGT-SAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ--- 167
+ S YV QDD ++ T+TV+E +++SA L+LP ++ +K+ER I E+GL
Sbjct: 117 PNFKCISGYVVQDDVVMGTMTVRENLHFSAALRLPSSISFQEKEERVTQIIGELGLSKVA 176
Query: 168 DA-MNTR-IRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQR 225
DA + T IR +SGG+++R +I +E++T P +LFLDEPT+GLD++ + V+ + KL +R
Sbjct: 177 DAKVGTELIRGVSGGERKRTNIGMELITEPPVLFLDEPTTGLDASTANAVLILLKKLSRR 236
Query: 226 DGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANEFFAFNGFPCPTHQNPS 285
GRTII SIHQP +F+LF +L LL+ G+ +Y GPA A E+F+ G+ C NP+
Sbjct: 237 ---GRTIIFSIHQPRYSIFKLFDSLTLLALGKVLYHGPAKQALEYFSSIGYECEPFNNPA 293
Query: 286 DHFLKTINKDF-----QKEAEEGLADGEIPTEEVINILKRSYKSCGIYEQVGSQVAEICK 340
D FL IN D KE + G+ V++ L + Y + +YE + ++ +
Sbjct: 294 DFFLDIINGDSTAVAASKEDHKPADTGKGKLSSVVDTLHQKYLNSSLYESTKEALGKV-E 352
Query: 341 QNYGTLEK--KRKHA-----SFLTQCHVLTRRSFVNMYRDLGYYWFRLAIYISMALGLAT 393
+ G +K K+ H F TQ + +++RS N+ R+ ++A+ + +AL +
Sbjct: 353 REQGRKKKVSKKGHEITYANGFFTQLYWVSKRSLKNLIRNPQASIAQIAVTVILALVVGA 412
Query: 394 LFSNLGTGYRSIQARGSLLMFVASFITFMTIGGFPSFVEDMKKCLFLWQ 442
+F + IQ R L FV + F ++ F+ D K LF+ Q
Sbjct: 413 IFFGVKLDESGIQNRVGSLFFVTTNQCFSSVSAIELFIRDKK--LFVHQ 459
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 2.5.1.75 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 449 | |||
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 4e-99 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 8e-75 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 4e-70 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 2e-63 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 5e-60 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 9e-60 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 2e-54 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 1e-50 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 5e-42 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 1e-41 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 2e-39 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 3e-37 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 3e-34 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 5e-33 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 3e-32 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 4e-32 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 4e-32 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 2e-31 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 7e-31 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 1e-30 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 8e-30 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 8e-30 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 2e-29 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 2e-29 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 5e-29 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 1e-28 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 8e-28 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 9e-28 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 1e-27 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 2e-27 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 3e-27 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 1e-26 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 2e-26 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 2e-26 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 5e-26 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 6e-26 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 7e-26 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 1e-25 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-25 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 3e-25 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 4e-25 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 7e-25 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 8e-25 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 1e-24 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 2e-24 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 7e-24 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 1e-23 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 2e-23 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 2e-23 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 8e-23 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 9e-23 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 1e-22 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 1e-22 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 2e-22 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 2e-22 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 3e-22 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 3e-22 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 5e-22 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 5e-22 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 6e-22 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 6e-22 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 8e-22 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 1e-21 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 1e-21 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 2e-21 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 2e-21 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 2e-21 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 3e-21 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 4e-21 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 4e-21 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 4e-21 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 5e-21 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 5e-21 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 7e-21 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 1e-20 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 1e-20 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 2e-20 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 2e-20 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 4e-20 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 2e-19 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 3e-19 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 3e-19 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 4e-19 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 5e-19 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 5e-19 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 5e-19 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 8e-19 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 8e-19 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 9e-19 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 1e-18 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 1e-18 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 3e-18 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 3e-18 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 3e-18 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 4e-18 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 5e-18 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-17 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 1e-17 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 1e-17 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 1e-17 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 1e-17 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 1e-17 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-17 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 2e-17 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 3e-17 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 3e-17 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 3e-17 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 4e-17 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 5e-17 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 5e-17 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 6e-17 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 8e-17 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 8e-17 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 8e-17 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 9e-17 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 9e-17 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 1e-16 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 2e-16 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 2e-16 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 3e-16 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 3e-16 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 4e-16 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 5e-16 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 6e-16 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 6e-16 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 6e-16 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 7e-16 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 8e-16 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 9e-16 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 9e-16 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 9e-16 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-15 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 1e-15 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 2e-15 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 2e-15 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 2e-15 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 3e-15 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 3e-15 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 6e-15 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 7e-15 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 7e-15 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 7e-15 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 7e-15 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 8e-15 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 9e-15 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 1e-14 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 1e-14 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 1e-14 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 1e-14 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 1e-14 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 1e-14 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 2e-14 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-14 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 2e-14 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 2e-14 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 2e-14 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 3e-14 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 3e-14 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 3e-14 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 3e-14 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 3e-14 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 4e-14 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 4e-14 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 6e-14 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 7e-14 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 7e-14 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 8e-14 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 8e-14 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 1e-13 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 1e-13 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 2e-13 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 2e-13 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 2e-13 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 2e-13 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 2e-13 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 3e-13 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 3e-13 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 3e-13 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 4e-13 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 4e-13 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 4e-13 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 4e-13 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 6e-13 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 6e-13 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 6e-13 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 6e-13 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 6e-13 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 7e-13 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 7e-13 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 8e-13 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 9e-13 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 9e-13 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-12 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 1e-12 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 1e-12 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 1e-12 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-12 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 2e-12 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 2e-12 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 2e-12 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 2e-12 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 2e-12 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 2e-12 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 3e-12 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 3e-12 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 3e-12 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 3e-12 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 4e-12 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 5e-12 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 5e-12 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 5e-12 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 6e-12 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 6e-12 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 6e-12 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 7e-12 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 8e-12 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 9e-12 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 1e-11 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 1e-11 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-11 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 1e-11 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-11 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 2e-11 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 2e-11 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 2e-11 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 2e-11 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 2e-11 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 3e-11 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 3e-11 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 3e-11 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 4e-11 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 4e-11 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 6e-11 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 6e-11 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 6e-11 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 8e-11 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 9e-11 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 1e-10 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 1e-10 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 2e-10 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 2e-10 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 2e-10 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 2e-10 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 2e-10 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 2e-10 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 2e-10 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 2e-10 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 3e-10 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 3e-10 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 3e-10 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 3e-10 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 3e-10 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 3e-10 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 3e-10 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 3e-10 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 5e-10 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 6e-10 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 7e-10 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 7e-10 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 1e-09 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 1e-09 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 2e-09 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 2e-09 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 2e-09 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 2e-09 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 3e-09 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 3e-09 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 3e-09 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 3e-09 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 3e-09 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 4e-09 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 5e-09 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 5e-09 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 6e-09 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 7e-09 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 7e-09 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 7e-09 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 8e-09 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 8e-09 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 1e-08 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 2e-08 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 2e-08 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 2e-08 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 2e-08 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 2e-08 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 2e-08 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 3e-08 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 3e-08 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 3e-08 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 4e-08 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 4e-08 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 5e-08 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 5e-08 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 5e-08 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 6e-08 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 7e-08 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 7e-08 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 9e-08 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 9e-08 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 9e-08 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 1e-07 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 1e-07 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 1e-07 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 1e-07 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 1e-07 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 1e-07 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 2e-07 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 2e-07 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 2e-07 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 2e-07 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 2e-07 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 3e-07 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 3e-07 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 3e-07 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 3e-07 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 4e-07 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 4e-07 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 4e-07 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 4e-07 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 6e-07 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 6e-07 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 6e-07 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 9e-07 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 1e-06 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 2e-06 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 2e-06 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 3e-06 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 3e-06 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 3e-06 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 3e-06 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 4e-06 | |
| cd03240 | 204 | cd03240, ABC_Rad50, ATP-binding cassette domain of | 4e-06 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 5e-06 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 8e-06 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 9e-06 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 1e-05 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 1e-05 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 1e-05 | |
| COG4170 | 330 | COG4170, SapD, ABC-type antimicrobial peptide tran | 2e-05 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 3e-05 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 3e-05 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 4e-05 | |
| PRK01889 | 356 | PRK01889, PRK01889, GTPase RsgA; Reviewed | 4e-05 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 4e-05 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 5e-05 | |
| COG3709 | 192 | COG3709, COG3709, Uncharacterized component of pho | 7e-05 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 8e-05 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 1e-04 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| pfam13304 | 256 | pfam13304, AAA_21, AAA domain | 2e-04 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 3e-04 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 4e-04 | |
| TIGR02322 | 179 | TIGR02322, phosphon_PhnN, phosphonate metabolism p | 4e-04 | |
| pfam13207 | 114 | pfam13207, AAA_17, AAA domain | 6e-04 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 7e-04 | |
| PRK15093 | 330 | PRK15093, PRK15093, antimicrobial peptide ABC tran | 7e-04 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 0.001 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 0.001 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 0.001 | |
| PRK06547 | 172 | PRK06547, PRK06547, hypothetical protein; Provisio | 0.001 | |
| cd01854 | 211 | cd01854, YjeQ_EngC, Ribosomal interacting GTPase Y | 0.002 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 0.002 | |
| pfam03193 | 161 | pfam03193, DUF258, Protein of unknown function, DU | 0.004 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 308 bits (792), Expect = 4e-99
Identities = 133/389 (34%), Positives = 213/389 (54%), Gaps = 32/389 (8%)
Query: 52 KKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKA 111
++ +L++++G AKPG LLA+MG SG+GKTTL++ALA R + +G +L+NG
Sbjct: 34 ERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID 93
Query: 112 LAYGT--SAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDA 169
SAYV QDD I TLTV+E + + A L++P + K +K+ER + ++ +GL+
Sbjct: 94 AKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKC 153
Query: 170 MNTRI------RRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLG 223
NTRI + LSGG+++R++ + E+LT P LLF DEPTSGLDS +Y V+ + L
Sbjct: 154 ANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLA 213
Query: 224 QRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANEFFAFNGFPCPTHQN 283
Q+ G+TII +IHQPSSE+F+LF + L++ G+ Y G A FF+ G PCP + N
Sbjct: 214 QK---GKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYN 270
Query: 284 PSDHFLKTINKDFQKEAE---------EGLADGEIPTEEVINILKRSYKSCGIYEQVGSQ 334
P+D +++ + E E + A +I + ++N S K+ G+ + S+
Sbjct: 271 PADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVK--DSE 328
Query: 335 VAEICKQNYGTLEKKRKHASFLTQCHVLTRRSFVNMYRDLGYYWFRLAIYISMALGLATL 394
E N AS+ TQ + L +RS++++ RD RL + A+ + +
Sbjct: 329 NMEGIGYN----------ASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLI 378
Query: 395 FSNLGTGYRSIQARGSLLMFVASFITFMT 423
+ G + +Q L + +TF
Sbjct: 379 YLGQGLTQKGVQNINGALFLFLTNMTFQN 407
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 232 bits (594), Expect = 8e-75
Identities = 104/230 (45%), Positives = 144/230 (62%), Gaps = 38/230 (16%)
Query: 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLG 94
GV L++++LTVT+ S+ K +L++++G AKPG L AIMGPSG+GK+TLL+ALAGR
Sbjct: 1 GVTLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRR- 59
Query: 95 SDTRQTGKILINGHK--KALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSD 152
+ +G++LING K YV QDD L TLTV+E + ++A+L
Sbjct: 60 TGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKL---------- 109
Query: 153 KKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAAS 212
R LSGG+++RVSI++E+++ P LLFLDEPTSGLDS+++
Sbjct: 110 ----------------------RGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSA 147
Query: 213 YYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262
VMS + +L GRTII SIHQPSSE+F+LF L LLS G+ +YFG
Sbjct: 148 LQVMSLLRRLADT---GRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 221 bits (565), Expect = 4e-70
Identities = 93/228 (40%), Positives = 144/228 (63%), Gaps = 8/228 (3%)
Query: 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDT 97
L W D V + + + IL D++ + + G ++AI+G SGSGKTTLLDA++GR+
Sbjct: 4 LPWWD--VGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGG 61
Query: 98 RQTGKILINGH--KKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKE 155
+G+IL NG K AYV QDD L+ LTV+E + Y+A L+LP + +K+
Sbjct: 62 TTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKK 121
Query: 156 RAEVT-IREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYY 214
R E +R++ L ++ +SGG++RRVSI++++L PK+L LDEPTSGLDS +
Sbjct: 122 RVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALN 181
Query: 215 VMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262
++S +++L +R R +I +IHQP S++F+LF + LLS+G+ VY G
Sbjct: 182 LVSTLSQLARR---NRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 216 bits (551), Expect = 2e-63
Identities = 139/400 (34%), Positives = 209/400 (52%), Gaps = 52/400 (13%)
Query: 57 SILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKA-LAYG 115
+IL +TG A PG +LA++GPSGSGK+TLL+ALAGR+ + TG IL N K
Sbjct: 82 TILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNF-TGTILANNRKPTKQILK 140
Query: 116 TSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNT--- 172
+ +VTQDD L LTV+E + + + L+LP ++ K +K AE I E+GL NT
Sbjct: 141 RTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIG 200
Query: 173 --RIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGR 230
IR +SGG+++RVSI+ E+L P LL LDEPTSGLD+ A+Y ++ + L Q+ G+
Sbjct: 201 NSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQK---GK 257
Query: 231 TIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANEFFAFNGFPCPTHQNPSDHFLK 290
TI+ S+HQPSS V+Q+F ++ +LS G+ ++FG + A +F GF NP+D L
Sbjct: 258 TIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLD 317
Query: 291 TINKDFQKEAEEGLADGEIPTEEVINILKRSYKSCGIYEQVGSQVAEICKQNYGTLEKKR 350
N Q +G+++ E P V L SY + + +V + ++ R
Sbjct: 318 LANGVCQT---DGVSEREKPN--VKQSLVASYNTL-----LAPKVKAAIEMSHFPQANAR 367
Query: 351 KHASFLTQCHVLTRRSFVNMYRDLGYYWF-RLAIYISMALG----------------LAT 393
S T+ H + R ++ WF + +I + +L A
Sbjct: 368 FVGSASTKEHRSSDRISIST-------WFNQFSILLQRSLKERKHESFNTLRVFQVIAAA 420
Query: 394 LFSNL---GTGYRSIQARGSLLMFVASFITFMTIGGFPSF 430
L + L + +R +Q R LL F++ F G FPSF
Sbjct: 421 LLAGLMWWHSDFRDVQDRLGLLFFISIF-----WGVFPSF 455
|
Length = 659 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 211 bits (540), Expect = 5e-60
Identities = 126/437 (28%), Positives = 208/437 (47%), Gaps = 40/437 (9%)
Query: 15 LEMESSNKTANSLINVNEDDGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAI 74
L ES + + + +F W++LT + KK IL ++ G+ KPG L A+
Sbjct: 738 LTDESDDVNDEKDMEKESGEDIFH-WRNLTYEV--KIKKEKRVILNNVDGWVKPGTLTAL 794
Query: 75 MGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTS-AYVTQDDTLITTLTVK 133
MG SG+GKTTLL+ LA R+ + G L+NG ++ S YV Q D + T TV+
Sbjct: 795 MGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVR 854
Query: 134 EAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRI----RRLSGGQKRRVSISI 189
E++ +SA L+ P ++ KS+K E E I+ + ++ + + L+ Q++R++I +
Sbjct: 855 ESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGV 914
Query: 190 EILTRPKLL-FLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFH 248
E++ +PKLL FLDEPTSGLDS ++ + + KL G+ I+ +IHQPS+ +F+ F
Sbjct: 915 ELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADH---GQAILCTIHQPSAILFEEFD 971
Query: 249 NLCLLS-AGQTVYFGP-----ATAANEFFAFNGFPCPTHQNPSDHFLKTINKDFQKEAEE 302
L LL GQTVYFG T N F CP NP++ L+ I A +
Sbjct: 972 RLLLLQKGGQTVYFGDLGENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAHANQ 1031
Query: 303 GLADGEIPTEEVINILKRSYKSCGIYEQVGSQVAEICKQNYG-----TLEKKRKHA-SFL 356
+ +++ Y+ V +++ + + + K+A S
Sbjct: 1032 DYHE--------------VWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASLW 1077
Query: 357 TQCHVLTRRSFVNMYRDLGYYWFRLAIYISMALGLATLFSNLGTGYRSIQ-ARGSLLMFV 415
Q ++ R+F +R Y + + + I AL + F +GT + +Q ++ M
Sbjct: 1078 YQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQMFAVFMAT 1137
Query: 416 ASFITFMTIGGFPSFVE 432
F + P FV
Sbjct: 1138 VLFNPLIQ-QYLPPFVA 1153
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 193 bits (492), Expect = 9e-60
Identities = 92/227 (40%), Positives = 127/227 (55%), Gaps = 40/227 (17%)
Query: 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDT 97
LTWK+L T+ K G +L +++GY KPG L A+MG SG+GKTTLLD LAGR +
Sbjct: 4 LTWKNLNYTV--PVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGV 61
Query: 98 RQTGKILINGHKKALAYG-TSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKER 156
TG+ILING + ++ YV Q D LTV+EA+ +SA L
Sbjct: 62 I-TGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALL-------------- 106
Query: 157 AEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVM 216
R LS Q++R++I +E+ +P +LFLDEPTSGLDS A+Y ++
Sbjct: 107 ------------------RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIV 148
Query: 217 SRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLL-SAGQTVYFG 262
+ KL G+ I+ +IHQPS+ +F+ F L LL G+TVYFG
Sbjct: 149 RFLKKLADS---GQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 182 bits (465), Expect = 2e-54
Identities = 77/238 (32%), Positives = 125/238 (52%), Gaps = 13/238 (5%)
Query: 43 LTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGK 102
+ V ++ G + L+ ++ +PG + ++GP+G+GKTTLL LAG L + G+
Sbjct: 5 IEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTS---GE 61
Query: 103 ILINGHK----KALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAE 158
IL+ G+ A YV Q+ +L LTV+E + + A+L + K + +ER E
Sbjct: 62 ILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLY---GLSKEEAEERIE 118
Query: 159 VTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSR 218
+ GL+D N ++R LSGG K+R+SI++ +L P+LL LDEPTSGLD + +
Sbjct: 119 ELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWEL 178
Query: 219 IAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANEFFAFNGF 276
+ +L + G TI+ S H E +L + +L+ G+ + G E F G
Sbjct: 179 LRELAKEG--GVTILLSTHI-LEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGV 233
|
Length = 293 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 184 bits (470), Expect = 1e-50
Identities = 107/412 (25%), Positives = 170/412 (41%), Gaps = 67/412 (16%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRL-GSDTRQTGKILINGH-----KKA 111
IL+ + G KPG L ++G GSG +TLL +A G G I +G KK
Sbjct: 76 ILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKH 135
Query: 112 LAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKS-DKKERAE----VTIREMGL 166
G Y + D LTV E + ++A+ + P P ++E A+ V + GL
Sbjct: 136 YR-GDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGL 194
Query: 167 QDAMNTR-----IRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASY-YV----- 215
NT+ +R +SGG+++RVSI+ L K+ D T GLDSA + ++
Sbjct: 195 SHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKT 254
Query: 216 MSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANEFFAFNG 275
+ I T + +I+Q S + ++LF + +L G +YFGPA A ++F G
Sbjct: 255 SANILDT--------TPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMG 306
Query: 276 FPCPTHQNPSDHFL--------KTINKDFQK-----------------EAEEGLADGEIP 310
F CP Q +D FL + I ++K E + + + +
Sbjct: 307 FKCPDRQTTAD-FLTSLTSPAERQIKPGYEKKVPRTPQEFETYWRNSPEYAQLMKEIDEY 365
Query: 311 TEEVINILKRSYKSCGIYEQVGSQVAEICKQNYGTLEKKRKHASFLTQCHVLTRRSFVNM 370
+ + Y + + + KQ+ T SF Q R+F+ M
Sbjct: 366 LDRC-----SESDTKEAYRE-----SHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRM 415
Query: 371 YRDLGYYWFRLAIYISMALGLATLFSNLGTGYRSIQARGSLLMFVASFITFM 422
+ + F + I MAL L+++F NL +RG L F F F
Sbjct: 416 KGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALFFAILFNAFS 467
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 148 bits (375), Expect = 5e-42
Identities = 75/215 (34%), Positives = 116/215 (53%), Gaps = 15/215 (6%)
Query: 52 KKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH--- 108
KKG+ ++DL+ G + ++G +G+GKTT L L G L + G ING+
Sbjct: 11 KKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTS---GTAYINGYSIR 67
Query: 109 -KKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ 167
+ A + Y Q D L LTV+E + + A+L+ +PKS+ KE E+ +R +GL
Sbjct: 68 TDRKAARQSLGYCPQFDALFDELTVREHLRFYARLK---GLPKSEIKEEVELLLRVLGLT 124
Query: 168 DAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDG 227
D N R R LSGG KR++S++I ++ P +L LDEPTSGLD A+ + I ++ +
Sbjct: 125 DKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--- 181
Query: 228 IGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262
GR+II + H E L + ++S G+ G
Sbjct: 182 -GRSIILTTHSM-DEAEALCDRIAIMSDGKLRCIG 214
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 146 bits (370), Expect = 1e-41
Identities = 69/234 (29%), Positives = 115/234 (49%), Gaps = 38/234 (16%)
Query: 35 GVFLTWKDLTVTIVSNGKKGSS--SILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGR 92
L+W++ I KG S IL+D +G KPG ++ ++G GSG +TLL ALA R
Sbjct: 1 ASTLSWRN----ISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANR 56
Query: 93 LGSDTRQTGKILINGH--KKALAY--GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTM 148
+ G I NG K+ G YV+++D TLTV+E + ++ + +
Sbjct: 57 TEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK----- 111
Query: 149 PKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208
G N +R +SGG+++RVSI+ +++R +L D T GLD
Sbjct: 112 ----------------G-----NEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLD 150
Query: 209 SAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262
S+ + ++ I + D + T S++Q S E++ LF + +L G+ +Y+G
Sbjct: 151 SSTALEILKCIRTMA--DVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 151 bits (383), Expect = 2e-39
Identities = 102/300 (34%), Positives = 159/300 (53%), Gaps = 49/300 (16%)
Query: 52 KKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHK-- 109
KK +IL+D +G KP + ++GP SGKTTLL ALAG+L + +G+I NG++
Sbjct: 174 KKTKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLN 233
Query: 110 KALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQ-------LPDTMPKSDKKE----RAE 158
+ + TSAY++Q+D + +TVKE + +SA+ Q L + + +K AE
Sbjct: 234 EFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAE 293
Query: 159 V--------------------TIREMGL---QDAM--NTRIRRLSGGQKRRVSISIEILT 193
V T++ +GL +D + + IR +SGGQK+RV+ I+
Sbjct: 294 VDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVG 353
Query: 194 RPKLLFLDEPTSGLDSAASYYV---MSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNL 250
K LF+DE ++GLDS+ +Y + + +I L + T++ S+ QP+ E F LF ++
Sbjct: 354 PTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEA-----TVLMSLLQPAPETFDLFDDI 408
Query: 251 CLLSAGQTVYFGPATAANEFFAFNGFPCPTHQNPSDHFLKTINKDFQKEAEEGLADGEIP 310
LLS GQ VY GP EFF GF CP + +D FL+ + +K+ E+ AD P
Sbjct: 409 ILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTAD-FLQEVTS--KKDQEQYWADRNKP 465
|
Length = 1470 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 134 bits (341), Expect = 3e-37
Identities = 67/213 (31%), Positives = 105/213 (49%), Gaps = 18/213 (8%)
Query: 52 KKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING---- 107
G+ L+D++ K G + I+GP+GSGK+TLL L G LG +G++L++G
Sbjct: 10 PDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG---PTSGEVLVDGKDLT 66
Query: 108 -HKKALAYGTSAYVTQD-DTLITTLTVKEAVYYSA-QLQLPDTMPKSDKKERAEVTIREM 164
V Q+ D TV+E V + L LP + + +ER E + +
Sbjct: 67 KLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLP----EEEIEERVEEALELV 122
Query: 165 GLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQ 224
GL+ + LSGGQK+RV+I+ + P +L LDEPT+GLD A ++ + KL
Sbjct: 123 GLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKA 182
Query: 225 RDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQ 257
G+TII H + +L + +L G+
Sbjct: 183 E---GKTIIIVTHDL-DLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 3e-34
Identities = 92/246 (37%), Positives = 142/246 (57%), Gaps = 26/246 (10%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH-KKALAYG- 115
+L ++TG +PG L A+MG SG+GKTTL+D LAGR + G I I+G KK +
Sbjct: 895 LLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGR-KTGGYIEGDIRISGFPKKQETFAR 953
Query: 116 TSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDK----KERAEVTIREM-GLQDAM 170
S Y Q+D +TV+E++ YSA L+LP + K +K E E+ E+ L+DA+
Sbjct: 954 ISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELV--ELDNLKDAI 1011
Query: 171 N--TRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGI 228
+ LS Q++R++I++E++ P ++F+DEPTSGLD+ A+ VM + R+ +
Sbjct: 1012 VGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-----RNTV 1066
Query: 229 --GRTIIASIHQPSSEVFQLFHNLCLLS-AGQTVYFGP----ATAANEFF-AFNGFP-CP 279
GRT++ +IHQPS ++F+ F L L+ GQ +Y GP + E+F A G P
Sbjct: 1067 DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIK 1126
Query: 280 THQNPS 285
NP+
Sbjct: 1127 EKYNPA 1132
|
Length = 1470 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 124 bits (315), Expect = 5e-33
Identities = 68/219 (31%), Positives = 105/219 (47%), Gaps = 14/219 (6%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHK---- 109
G IL+DL+ G + I+GP+GSGK+TLL LAG L ++G++L++G
Sbjct: 13 GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLL---KPKSGEVLLDGKDIASL 69
Query: 110 --KALAYGTSAYVTQDDTLITTLTVKEAVYYS-AQLQLPDTMPKSDKKERAEVTIREMGL 166
K LA AYV Q + LTV E V P + +E E + +GL
Sbjct: 70 SPKELA-KKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGL 128
Query: 167 QDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRD 226
+ + + LSGG+++RV I+ + +L LDEPTS LD A V+ + L +
Sbjct: 129 EHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREK 188
Query: 227 GIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPAT 265
G+ T++ +H + + +L LL G+ V G
Sbjct: 189 GL--TVVMVLHDL-NLAARYADHLILLKDGKIVAQGTPE 224
|
Length = 258 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 3e-32
Identities = 67/231 (29%), Positives = 113/231 (48%), Gaps = 25/231 (10%)
Query: 41 KDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQT 100
++LTV+ G+ +LED++ + G + A++GP+G+GK+TLL A+ G L +
Sbjct: 8 ENLTVSY------GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLL---KPSS 58
Query: 101 GKILING--HKKALAYGTSAYVTQDDTLITT--LTVKEAVY---YSAQLQLPDTMPKSDK 153
G+I I G +K YV Q ++ + +TVK+ V Y +
Sbjct: 59 GEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR--RLNKKD 116
Query: 154 KERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASY 213
KE+ + + +G++D + +I LSGGQK+RV ++ + P LL LDEP +G+D A
Sbjct: 117 KEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQK 176
Query: 214 YVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLF-HNLCLLSAGQTVYFGP 263
+ + +L Q G+T++ H V F +CL + GP
Sbjct: 177 EIYDLLKELRQE---GKTVLMVTHDL-GLVMAYFDRVICL--NRHLIASGP 221
|
Length = 254 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 4e-32
Identities = 63/192 (32%), Positives = 97/192 (50%), Gaps = 17/192 (8%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH--------K 109
L+ ++ + G +AI+GPSGSGK+TLL+ L G D +G++ ++G +
Sbjct: 19 ALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGL---DRPTSGEVRVDGTDISKLSEKE 75
Query: 110 KALAYGTS-AYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD 168
A +V Q L+ LT E V L +PK +++ERAE + +GL D
Sbjct: 76 LAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLA---GVPKKERRERAEELLERVGLGD 132
Query: 169 AMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGI 228
+N LSGGQ++RV+I+ + PK++ DEPT LDS VM + +L + G
Sbjct: 133 RLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGT 192
Query: 229 GRTIIASIHQPS 240
TI+ H P
Sbjct: 193 --TIVVVTHDPE 202
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 4e-32
Identities = 62/228 (27%), Positives = 111/228 (48%), Gaps = 16/228 (7%)
Query: 43 LTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGK 102
+ +S G + L+D++ + G + ++GP+GSGK+TLL L G L +G+
Sbjct: 4 IEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLL---KPTSGE 60
Query: 103 ILINGHKKALAYGTSA------YVTQD-DTLITTLTVKEAVYYSAQLQLPDTMPKSDKKE 155
+L++G + V Q+ D + TV++ V + L +P+ + +E
Sbjct: 61 VLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGL-ENLG--LPREEIEE 117
Query: 156 RAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYV 215
R + +GL++ ++ LSGGQK+RV+I+ + P++L LDEPT+GLD +
Sbjct: 118 RVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRREL 177
Query: 216 MSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263
+ + KL + G TII H V + + +L G+ + G
Sbjct: 178 LELLKKLKEEGGK--TIIIVTHDL-ELVLEYADRVVVLDDGKILADGD 222
|
Length = 235 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 2e-31
Identities = 69/209 (33%), Positives = 107/209 (51%), Gaps = 20/209 (9%)
Query: 41 KDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQT 100
K+++ G+K L+D+ + G +AI+GPSGSGK+TLL+ L G L D +
Sbjct: 5 KNVSKIYGLGGEKVE--ALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGG-L--DKPTS 59
Query: 101 GKILINGH------KKALA---YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKS 151
G++LING +K LA +V Q+ L+ LTV E V +
Sbjct: 60 GEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAG---KSAG 116
Query: 152 DKKERAEVTIREMGLQDAMNT-RIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSA 210
+K AE + +GL+D + + LSGGQ++RV+I+ ++ PK++ DEPT LDS
Sbjct: 117 RRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSK 176
Query: 211 ASYYVMSRIAKLGQRDGIGRTIIASIHQP 239
+ V+ + +L + G TII H P
Sbjct: 177 TAKEVLELLRELNKERGK--TIIMVTHDP 203
|
Length = 226 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 7e-31
Identities = 62/194 (31%), Positives = 95/194 (48%), Gaps = 18/194 (9%)
Query: 48 VSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING 107
+S K + IL+DL+ G ++A+ G +G+GKTTL LAG L ++ G IL+NG
Sbjct: 5 ISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAG-LIKESS--GSILLNG 61
Query: 108 HKKALA--YGTSAYVTQD-DTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREM 164
+ YV QD D + T +V+E + E+AE ++++
Sbjct: 62 KPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGL-------KELDAGNEQAETVLKDL 114
Query: 165 GLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKL-G 223
L LSGGQK+R++I+ +L+ LL DEPTSGLD Y M R+ +L
Sbjct: 115 DLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD----YKNMERVGELIR 170
Query: 224 QRDGIGRTIIASIH 237
+ G+ +I H
Sbjct: 171 ELAAQGKAVIVITH 184
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 1e-30
Identities = 60/203 (29%), Positives = 98/203 (48%), Gaps = 21/203 (10%)
Query: 41 KDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQT 100
+DLTV+ G +LED++ KPG LAI+GP+G+GK+TLL A+ G L +
Sbjct: 3 EDLTVSY------GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLL---KPTS 53
Query: 101 GKILINGHKKALAYGTSAYVTQDDTLITT--LTVKEAV----YYSAQLQLPDTMPKSDKK 154
G I + G YV Q ++ ++V++ V Y L K
Sbjct: 54 GSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRR---LSKADK 110
Query: 155 ERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYY 214
+ + + +GL + + +I LSGGQ++RV ++ ++ P LL LDEP +G+D
Sbjct: 111 AKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQED 170
Query: 215 VMSRIAKLGQRDGIGRTIIASIH 237
+ + +L + G TI+ H
Sbjct: 171 IYELLRELRRE---GMTILVVTH 190
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 8e-30
Identities = 59/210 (28%), Positives = 108/210 (51%), Gaps = 11/210 (5%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA 113
G + L+D++ + G + ++GP+G+GKTT + + G + D+ G++L +G +A
Sbjct: 11 GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDS---GEVLFDGKPLDIA 67
Query: 114 YGTS-AYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNT 172
Y+ ++ L + V + + Y AQL+ + K + + R + + + L + N
Sbjct: 68 ARNRIGYLPEERGLYPKMKVIDQLVYLAQLK---GLKKEEARRRIDEWLERLELSEYANK 124
Query: 173 RIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTI 232
R+ LS G +++V ++ P+LL LDEP SGLD + I +L + G+T+
Sbjct: 125 RVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARA---GKTV 181
Query: 233 IASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262
I S HQ V +L + LL+ G+ V +G
Sbjct: 182 ILSTHQ-MELVEELCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 114 bits (289), Expect = 8e-30
Identities = 71/217 (32%), Positives = 112/217 (51%), Gaps = 22/217 (10%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING------ 107
GS L+DL+ +PG LA++GPSG GKTTLL +AG D+ G+ILI+G
Sbjct: 11 GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDS---GEILIDGRDVTGV 67
Query: 108 --HKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMG 165
++ + V QD L LTV E + + +L+ +PK++ + R + +G
Sbjct: 68 PPERRNIGM-----VFQDYALFPHLTVAENIAFGLKLRG---VPKAEIRARVRELLELVG 119
Query: 166 LQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQR 225
L+ +N LSGGQ++RV+++ + P LL LDEP S LD+ + + +L QR
Sbjct: 120 LEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKEL-QR 178
Query: 226 DGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262
+ +G T I H E L + +++ G+ V G
Sbjct: 179 E-LGITTIYVTHDQ-EEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 2e-29
Identities = 57/196 (29%), Positives = 97/196 (49%), Gaps = 15/196 (7%)
Query: 71 LLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHK----KALAYGTSAYVTQDDTL 126
+ ++GP+G+GKTTL+ LA + G I I+G Y+ Q+ +
Sbjct: 27 MYGLLGPNGAGKTTLMRILATLTPPSS---GTIRIDGQDVLKQPQKLRRRIGYLPQEFGV 83
Query: 127 ITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVS 186
TV+E + Y A L+ +P + K R + + + L D +I LSGG +RRV
Sbjct: 84 YPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVG 140
Query: 187 ISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQL 246
I+ ++ P +L +DEPT+GLD + +++LG+ R +I S H +V L
Sbjct: 141 IAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE----DRIVILSTHI-VEDVESL 195
Query: 247 FHNLCLLSAGQTVYFG 262
+ + +L+ G+ V+ G
Sbjct: 196 CNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 2e-29
Identities = 79/247 (31%), Positives = 128/247 (51%), Gaps = 28/247 (11%)
Query: 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDT 97
+ ++L+ T NGKK L+D++ PG +A++GPSG+GK+TLL L G + +
Sbjct: 1 IEVENLSKTY-PNGKK----ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTS 55
Query: 98 RQTGKILINGH------KKAL--AYGTSAYVTQDDTLITTLTVKEAV------YYSAQLQ 143
G +LI+G KAL + Q LI L+V E V S
Sbjct: 56 ---GSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRS 112
Query: 144 LPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEP 203
L PK +K +RA + +GL D R +LSGGQ++RV+I+ ++ +PKL+ DEP
Sbjct: 113 LFGLFPKEEK-QRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEP 171
Query: 204 TSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHN-LCLLSAGQTVYFG 262
+ LD A+S VM + ++ + +GI T+I S+HQ ++ + + + + L G+ V+ G
Sbjct: 172 VASLDPASSRQVMDLLKRINREEGI--TVIVSLHQV--DLAREYADRIVGLKDGRIVFDG 227
Query: 263 PATAANE 269
P +
Sbjct: 228 PPAELTD 234
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 5e-29
Identities = 65/223 (29%), Positives = 102/223 (45%), Gaps = 26/223 (11%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH----- 108
G ++L+ + + G +LAI+GPSGSGK+TLL + G L +G++LI+G
Sbjct: 11 GGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLL---RPDSGEVLIDGEDISGL 67
Query: 109 ----KKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLP----DTMPKSDKKERAEVT 160
L + Q L +LTV E V P + + + +E
Sbjct: 68 SEAELYRLRRRM-GMLFQSGALFDSLTVFENV------AFPLREHTRLSEEEIREIVLEK 120
Query: 161 IREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIA 220
+ +GL+ A + LSGG K+RV+++ + P+LL DEPT+GLD AS + I
Sbjct: 121 LEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIR 180
Query: 221 KLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263
L + +G T I H F + + +L G+ V G
Sbjct: 181 SL--KKELGLTSIMVTHD-LDTAFAIADRIAVLYDGKIVAEGT 220
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 1e-28
Identities = 57/155 (36%), Positives = 88/155 (56%), Gaps = 6/155 (3%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA 113
G +LED+ + G +AI+GPSG GK+TLL +AG L + +G++L++G
Sbjct: 14 GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAG-L--EKPTSGEVLLDGRPVTGP 70
Query: 114 YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTR 173
YV Q+D L+ LTV + V +L+ K++ +ERA+ + +GL +
Sbjct: 71 GPDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDKY 127
Query: 174 IRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208
+LSGG ++RV+I+ + TRPKLL LDEP LD
Sbjct: 128 PHQLSGGMRQRVAIARALATRPKLLLLDEPFGALD 162
|
Length = 248 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 8e-28
Identities = 56/206 (27%), Positives = 92/206 (44%), Gaps = 56/206 (27%)
Query: 52 KKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKA 111
+ G + L++++ K G ++A++GP+GSGK+TLL A+AG L + G+ILI+G
Sbjct: 8 RYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTS---GEILIDGK--- 61
Query: 112 LAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMN 171
D + ++ + Y QL
Sbjct: 62 -----------DIAKLPLEELRRRIGYVPQL----------------------------- 81
Query: 172 TRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRT 231
SGGQ++RV+++ +L P LL LDEPTSGLD A+ ++ + +L + GRT
Sbjct: 82 ------SGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEE---GRT 132
Query: 232 IIASIHQPSSEVFQLFHNLCLLSAGQ 257
+I H P + +L G+
Sbjct: 133 VIIVTHDP-ELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 9e-28
Identities = 58/158 (36%), Positives = 89/158 (56%), Gaps = 6/158 (3%)
Query: 51 GKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKK 110
G G+ + LED++ + G +A++GPSG GK+TLL +AG L T G++L++G
Sbjct: 12 GGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAG-LERPTS--GEVLVDGEPV 68
Query: 111 ALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAM 170
YV Q D L+ LTV + V +LQ +PK++ +ERAE + +GL
Sbjct: 69 TGPGPDRGYVFQQDALLPWLTVLDNVALGLELQG---VPKAEARERAEELLELVGLSGFE 125
Query: 171 NTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208
N +LSGG ++RV+++ + P +L LDEP S LD
Sbjct: 126 NAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALD 163
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 1e-27
Identities = 60/201 (29%), Positives = 99/201 (49%), Gaps = 26/201 (12%)
Query: 52 KKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKA 111
K G IL+DL + G + AI+G SGSGK+TLL+ + + +G++ +NG ++
Sbjct: 7 KFGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGL---LEKFDSGQVYLNG-QET 62
Query: 112 LAYGTS----------AYVTQDDTLITTLTVKEAVYYSAQLQLP---DTMPKSDKKERAE 158
+ Y+ Q+ LI TV+E L L + K +K+E+ +
Sbjct: 63 PPLNSKKASKFRREKLGYLFQNFALIENETVEE------NLDLGLKYKKLSKKEKREKKK 116
Query: 159 VTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSR 218
+ ++GL + +I LSGG+++RV+++ IL P L+ DEPT LD V+
Sbjct: 117 EALEKVGLNLKLKQKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDL 176
Query: 219 IAKLGQRDGIGRTIIASIHQP 239
+ +L G+TII H P
Sbjct: 177 LLELNDE---GKTIIIVTHDP 194
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 2e-27
Identities = 54/216 (25%), Positives = 94/216 (43%), Gaps = 52/216 (24%)
Query: 48 VSNGKK--GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILI 105
V N K G + L+D++ + G + ++GP+G+GKTTL+ + G L +G+I +
Sbjct: 3 VRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKV 59
Query: 106 NGH----KKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTI 161
G + Y+ ++ +L LTV+E + S
Sbjct: 60 LGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLS---------------------- 97
Query: 162 REMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAK 221
GG K+R++++ +L P+LL LDEPTSGLD + + +
Sbjct: 98 -----------------GGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRE 140
Query: 222 LGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQ 257
L + G+TI+ S H E +L + +L+ G+
Sbjct: 141 LKKE---GKTILLSSHIL-EEAERLCDRVAILNNGR 172
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 3e-27
Identities = 57/215 (26%), Positives = 94/215 (43%), Gaps = 50/215 (23%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHK---- 109
G ++L+DL+ + G ++ I+GP+G+GK+TLL LAG L +G+IL++G
Sbjct: 10 GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDLASL 66
Query: 110 --KALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ 167
K LA AYV Q + +GL
Sbjct: 67 SPKELA-RKIAYVPQ-------------------------------------ALELLGLA 88
Query: 168 DAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDG 227
+ LSGG+++RV ++ + P +L LDEPTS LD A ++ + +L + G
Sbjct: 89 HLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERG 148
Query: 228 IGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262
T++ +H + + + LL G+ V G
Sbjct: 149 K--TVVMVLHDLNL-AARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 1e-26
Identities = 74/239 (30%), Positives = 120/239 (50%), Gaps = 30/239 (12%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA 113
GS +L+D+ + G + ++GPSG GK+TLL +AG + G+ILI+G
Sbjct: 14 GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTS---GEILIDGRDV--- 67
Query: 114 YGTS--------AYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMG 165
T A V Q+ L +TV E + + +L+ +PK++ +R + + +G
Sbjct: 68 --TDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLG 122
Query: 166 LQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVM-SRIAKLGQ 224
L+ +N + +LSGGQ++RV+++ ++ +PK+ LDEP S LD A +M S I KL +
Sbjct: 123 LEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLD-AKLRVLMRSEIKKLHE 181
Query: 225 RDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPAT-----AANEFFA-FNGFP 277
R G TI + H E L + +++ G+ G AN F A F G P
Sbjct: 182 RLGTT-TIYVT-HDQ-VEAMTLADRIVVMNDGRIQQVGTPLELYERPANLFVAGFIGSP 237
|
Length = 338 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 2e-26
Identities = 70/246 (28%), Positives = 113/246 (45%), Gaps = 31/246 (12%)
Query: 31 NEDDGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALA 90
+ + + +T + G IL+ + G +LAI+G SGSGK+TLL +
Sbjct: 2 SASPEPLIEVRGVTKSF------GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLIL 55
Query: 91 GRLGSDTRQTGKILINGHKKALAYGTSAY--------VTQDDTLITTLTVKEAVYYSAQL 142
G L G+ILI+G Y + Q L ++LTV E V
Sbjct: 56 GLL---RPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENV------ 106
Query: 143 QLP----DTMPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSGGQKRRVSISIEILTRPKL 197
P +P+S +E + + +GL+ A + LSGG ++RV+++ I P+L
Sbjct: 107 AFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPEL 166
Query: 198 LFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQ 257
LFLDEPTSGLD ++ + I +L D +G T+I H S + + + +L+ G+
Sbjct: 167 LFLDEPTSGLDPISAGVIDELIREL--NDALGLTVIMVTHDLDS-LLTIADRVAVLADGK 223
Query: 258 TVYFGP 263
+ G
Sbjct: 224 VIAEGT 229
|
Length = 263 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 2e-26
Identities = 74/241 (30%), Positives = 117/241 (48%), Gaps = 21/241 (8%)
Query: 43 LTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGK 102
+ V +S G L+D+ G ++AI+GPSG+GK+TLL +L G + + G+
Sbjct: 4 IEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTS---GE 60
Query: 103 ILINGH------KKAL--AYGTSAYVTQDDTLITTLTVKEAV------YYSAQLQLPDTM 148
IL NG K L + Q L+ L+V E V Y S L
Sbjct: 61 ILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLF 120
Query: 149 PKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208
K DK +A + +G+ D R LSGGQ++RV+I+ ++ +PK++ DEP + LD
Sbjct: 121 SKEDKA-QALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLD 179
Query: 209 SAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268
++ VM + + Q DGI T+I ++HQ + + L AG+ V+ GPA+
Sbjct: 180 PESAKKVMDILKDINQEDGI--TVIVNLHQVDL-AKKYADRIIGLKAGRIVFDGPASELT 236
Query: 269 E 269
+
Sbjct: 237 D 237
|
Length = 258 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 108 bits (270), Expect = 5e-26
Identities = 63/180 (35%), Positives = 97/180 (53%), Gaps = 17/180 (9%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING------ 107
G++++L+DL+ + G LLA++G SG GKTTLL A+AG + + TG+I I
Sbjct: 16 GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAG-LTGRIAIADRDLTHA 74
Query: 108 --HKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMG 165
HK+ LA + Q+ L L V++ V + + Q MPK+D ER ++ +G
Sbjct: 75 PPHKRGLAL-----LFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVG 126
Query: 166 LQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQR 225
L DA +LSGG ++R++I+ I P +L LDEP S LD+ + IA L +
Sbjct: 127 LGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEE 186
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 6e-26
Identities = 65/239 (27%), Positives = 117/239 (48%), Gaps = 30/239 (12%)
Query: 45 VTIVSNGKK-GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKI 103
+ I + K G + ++D++ K G + ++GPSG GKTTLL +AG + G+I
Sbjct: 6 LEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAG-FEQPSS--GEI 62
Query: 104 LING--------HKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKE 155
L++G K+ + V Q L +TV+E V + L++ + K++ K
Sbjct: 63 LLDGEDITDVPPEKRPIGM-----VFQSYALFPHMTVEENVAFG--LKVRKKLKKAEIKA 115
Query: 156 RAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYV 215
R E + +GL+ + + +LSGGQ++RV+++ ++ PK+L LDEP S LD+ +
Sbjct: 116 RVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQM 175
Query: 216 MSRIAKLGQRDGIGRTIIASIHQP------SSEVFQLFHNLCLLSAG--QTVYFGPATA 266
+ +L + GI T + H S + + ++ + G + +Y PAT
Sbjct: 176 RKELKELQRELGI--TFVYVTHDQEEALAMSDRIA-VMNDGRIEQVGTPEEIYERPATR 231
|
Length = 352 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 104 bits (263), Expect = 7e-26
Identities = 57/191 (29%), Positives = 94/191 (49%), Gaps = 25/191 (13%)
Query: 59 LEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSA 118
L+D++ +PG + ++GP+G+GKTTL + ++G L +G +L +G G
Sbjct: 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFL---RPTSGSVLFDGEDIT---GLPP 69
Query: 119 YVT---------QDDTLITTLTVKEAVYYSAQLQLPDTM-------PKSDKKERAEVTIR 162
+ Q L LTV E V +AQ + + + + +ERAE +
Sbjct: 70 HEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLE 129
Query: 163 EMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKL 222
+GL D + LS GQ+RR+ I+ + T PKLL LDEP +GL+ + + I +L
Sbjct: 130 RVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIREL 189
Query: 223 GQRDGIGRTII 233
+R G T++
Sbjct: 190 RER---GITVL 197
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 1e-25
Identities = 73/236 (30%), Positives = 116/236 (49%), Gaps = 27/236 (11%)
Query: 49 SNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING- 107
NGK+ L+++ PG +AI+GPSG+GK+TLL + RL + +G IL+ G
Sbjct: 12 PNGKQA----LKNINLNINPGEFVAIIGPSGAGKSTLLRCI-NRLVEPS--SGSILLEGT 64
Query: 108 -------HKKALAYGTSAYVTQDDTLITTLTVKEAV------YYSAQLQLPDTMPKSDKK 154
K + Q LI LTV E V Y L + DK
Sbjct: 65 DITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDK- 123
Query: 155 ERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYY 214
ERA + +GL D R +LSGGQ++RV+I+ + +P L+ DEP + LD S
Sbjct: 124 ERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQ 183
Query: 215 VMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCL-LSAGQTVYFGPATAANE 269
VM + ++ + DGI T+I ++HQ ++ + + + + L AG+ V+ G + ++
Sbjct: 184 VMDYLKRINKEDGI--TVIINLHQ--VDLAKKYADRIVGLKAGEIVFDGAPSELDD 235
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 2e-25
Identities = 59/189 (31%), Positives = 85/189 (44%), Gaps = 53/189 (28%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH-----KKAL 112
+L+D++ KPG +AI+GPSGSGK+TLL L +G+ILI+G
Sbjct: 17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLY---DPTSGEILIDGVDLRDLDLES 73
Query: 113 AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNT 172
AYV QD L +S TIRE N
Sbjct: 74 LRKNIAYVPQDPFL-----------FSG-------------------TIRE-------N- 95
Query: 173 RIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTI 232
I LSGGQ++R++I+ +L P +L LDE TS LD ++ + L + G+T+
Sbjct: 96 -I--LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK----GKTV 148
Query: 233 IASIHQPSS 241
I H+ S+
Sbjct: 149 IVIAHRLST 157
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 3e-25
Identities = 57/181 (31%), Positives = 92/181 (50%), Gaps = 19/181 (10%)
Query: 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDT 97
L+ ++L++ G K + L +++ + G L I+G SGSGK+TL LAG +
Sbjct: 4 LSVRNLSIVY--GGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSS 61
Query: 98 RQTGKILINGHKKALAYGTSAY------VTQD--DTLITTLTVKEAVYYSAQLQLPDTMP 149
G IL++G A A+ V QD +L TV + + P +
Sbjct: 62 ---GSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLR---PHGLS 115
Query: 150 KSDKKERAEVTIREMGLQDA-MNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208
KS ++R + ++GL + ++ R LSGGQ++R++I+ ++ PKLL LDEPTS LD
Sbjct: 116 KS--QQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALD 173
Query: 209 S 209
Sbjct: 174 V 174
|
Length = 252 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 4e-25
Identities = 60/207 (28%), Positives = 103/207 (49%), Gaps = 19/207 (9%)
Query: 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDT 97
L K+L+V+ + GS L+D++ K G L ++G SGSGK+TL A+ G L
Sbjct: 2 LEVKNLSVSFPT--GGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILG-LLK-- 56
Query: 98 RQTGKILINGH-------KKALAYGTS-AYVTQD--DTLITTLTVKEAVYYSAQLQLPDT 147
+G I+ +G + V QD +L +T+ E + ++ +
Sbjct: 57 PTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLS 116
Query: 148 MPKSDKKERAEVTIREMGL-QDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSG 206
K +KE + + +GL ++ +N LSGGQ++RV+I+ + PKLL DEPTS
Sbjct: 117 -KKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSA 175
Query: 207 LDSAASYYVMSRIAKLGQRDGIGRTII 233
LD + ++ + KL ++ +G T++
Sbjct: 176 LDVSVQAQILDLLKKL--QEELGLTLL 200
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 7e-25
Identities = 54/208 (25%), Positives = 93/208 (44%), Gaps = 28/208 (13%)
Query: 68 PGHLLAIMGPSGSGKTTLLDALAG-------------RLGSDTRQTGKILINGHKKALAY 114
+ I G SG+GK+TLL +AG + D+R+ KI + ++ +
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRK--KINLPPQQRKIGL 79
Query: 115 GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRI 174
V Q L L V+E + + L + D+ E+ +GL +N
Sbjct: 80 -----VFQQYALFPHLNVRENLAFG----LKRKRNREDRISVDELLDL-LGLDHLLNRYP 129
Query: 175 RRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIA 234
+LSGG+K+RV+++ + +P+LL LDEP S LD A ++ + ++ + I +I
Sbjct: 130 AQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNI--PVIF 187
Query: 235 SIHQPSSEVFQLFHNLCLLSAGQTVYFG 262
H SE L + ++ G+ Y G
Sbjct: 188 VTHDL-SEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 8e-25
Identities = 63/224 (28%), Positives = 105/224 (46%), Gaps = 14/224 (6%)
Query: 43 LTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGK 102
L VT ++ + D++ A+ G + ++G +G+GKTTLL +A L D+ GK
Sbjct: 2 LEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDS---GK 58
Query: 103 ILING---HKKALAYGTSAYVTQDDT-LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAE 158
+ I+G + V + L LT +E + Y A+L + + + + K R
Sbjct: 59 VTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARL---NGLSRKEIKARIA 115
Query: 159 VTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSR 218
+ + L + ++ R+ S G K++V+I+ ++ P +L LDEPTSGLD
Sbjct: 116 ELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDF 175
Query: 219 IAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262
I +L GR +I S H EV L + +L G+ V G
Sbjct: 176 IKQLKNE---GRAVIFSSHI-MQEVEALCDRVIVLHKGEVVLEG 215
|
Length = 245 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 1e-24
Identities = 59/183 (32%), Positives = 99/183 (54%), Gaps = 16/183 (8%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH----- 108
G+ L+D++ +PG +A++GP+G+GK+TL L + Q G+I + GH
Sbjct: 12 GARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVA---QEGQISVAGHDLRRA 68
Query: 109 -KKALAY-GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGL 166
+ ALA G V Q TL L+V++ + Y A L + +++ + R + +GL
Sbjct: 69 PRAALARLGV---VFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARARIAELLARLGL 122
Query: 167 QDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRD 226
+ + ++R L+GG +RRV I+ +L RP LL LDEPT GLD A+ + + + L +
Sbjct: 123 AERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQ 182
Query: 227 GIG 229
G+
Sbjct: 183 GLS 185
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 2e-24
Identities = 54/152 (35%), Positives = 84/152 (55%), Gaps = 6/152 (3%)
Query: 57 SILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGT 116
S LED++ G L+ ++GPSG GKTTLL+ +AG + T G I +NG +
Sbjct: 19 SALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFV---TPSRGSIQLNGRRIEGPGAE 75
Query: 117 SAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRR 176
V Q++ L+ L V + V + QL+ + K+ ++E A + +GL+ A + I +
Sbjct: 76 RGVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYIWQ 132
Query: 177 LSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208
LSGG ++RV I+ + P+LL LDEP LD
Sbjct: 133 LSGGMRQRVGIARALAVEPQLLLLDEPFGALD 164
|
Length = 259 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 99.2 bits (248), Expect = 7e-24
Identities = 61/222 (27%), Positives = 99/222 (44%), Gaps = 21/222 (9%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAG--RLGSDTRQTGKILINGHKKA 111
G L+D++ G + A++GPSG GK+TLL L L G++L++G K
Sbjct: 11 GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDG-KDI 69
Query: 112 LAYGTSAY--------VTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIRE 163
V Q ++ + V Y +L K + ER E +R+
Sbjct: 70 YDLDVDVLELRRRVGMVFQKPNPFP-GSIYDNVAYGLRLH--GIKLKEELDERVEEALRK 126
Query: 164 MGLQDAMNTRI--RRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAK 221
L D + R+ LSGGQ++R+ ++ + P++L LDEPTS LD ++ + IA+
Sbjct: 127 AALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAE 186
Query: 222 LGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263
L + TI+ H + ++ L G+ V FGP
Sbjct: 187 LKKE----YTIVIVTHNM-QQAARVADRTAFLLNGRLVEFGP 223
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 1e-23
Identities = 69/251 (27%), Positives = 117/251 (46%), Gaps = 27/251 (10%)
Query: 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSD- 96
L K+L+V+ ++ G ++ ++ K G +L I+G SGSGK+ L A+ G L
Sbjct: 2 LEVKNLSVSFPTD--AGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPN 59
Query: 97 -TRQTGKILING------HKKALA--YGTS-AYVTQD--DTLITTLTVKEAVYYSAQLQL 144
G+IL +G +K L G A + QD +L +T+ + + +L
Sbjct: 60 ARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHG 119
Query: 145 PDTMPKSDKKERAEVTIREMGLQDAMNTRIRR----LSGGQKRRVSISIEILTRPKLLFL 200
+ K + KERA + +G+ D R++ LSGG ++RV I++ + PKLL
Sbjct: 120 KG-LSKKEAKERAIELLELVGIPDPE-RRLKSYPHELSGGMRQRVMIAMALALNPKLLIA 177
Query: 201 DEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260
DEPT+ LD ++ + +L + G +I H V ++ + ++ AG+ V
Sbjct: 178 DEPTTALDVTVQAQILDLLKEL--QREKGTALILITHDLGV-VAEIADRVAVMYAGRIVE 234
Query: 261 FGPATAANEFF 271
GP E F
Sbjct: 235 EGP---VEEIF 242
|
Length = 316 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 97.7 bits (244), Expect = 2e-23
Identities = 56/163 (34%), Positives = 89/163 (54%), Gaps = 19/163 (11%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING------ 107
G L+ ++ K G ++GPSG GKTTLL +AG +T +G+IL++G
Sbjct: 11 GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAG---FETPTSGEILLDGKDITNL 67
Query: 108 --HKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMG 165
HK+ + T V Q+ L LTV E + + +L+ +PK++ KER + +
Sbjct: 68 PPHKRPV--NT---VFQNYALFPHLTVFENIAFGLRLK---KLPKAEIKERVAEALDLVQ 119
Query: 166 LQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208
L+ N + +LSGGQ++RV+I+ ++ PK+L LDEP LD
Sbjct: 120 LEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALD 162
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 97.4 bits (243), Expect = 2e-23
Identities = 54/175 (30%), Positives = 94/175 (53%), Gaps = 12/175 (6%)
Query: 67 KPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH---KKALAYGTS-AYVTQ 122
+ G + ++GP+G+GKTT + L L +G+ + GH ++ V Q
Sbjct: 24 RRGEIFGLLGPNGAGKTTTIKMLTTLLKP---TSGRATVAGHDVVREPREVRRRIGIVFQ 80
Query: 123 DDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQK 182
D ++ LT E +Y A+L +P ++++ER + + +GL +A + ++ SGG +
Sbjct: 81 DLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMR 137
Query: 183 RRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIH 237
RR+ I+ ++ RP++LFLDEPT GLD +V I KL + G+ TI+ + H
Sbjct: 138 RRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGM--TILLTTH 190
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 95.8 bits (239), Expect = 8e-23
Identities = 65/215 (30%), Positives = 106/215 (49%), Gaps = 24/215 (11%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH----- 108
G + L D++ + + G L + GPSG+GKTTLL L G L T G++ I G
Sbjct: 13 GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGAL---TPSRGQVRIAGEDVNRL 69
Query: 109 -KKALAY-----GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIR 162
+ L G V QD L+ TV E V +++ + + + R +R
Sbjct: 70 RGRQLPLLRRRIGV---VFQDFRLLPDRTVYENVALPLEVR---GKKEREIQRRVGAALR 123
Query: 163 EMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKL 222
++GL+ + +LSGG+++RV+I+ I+ P LL DEPT LD S ++ + +L
Sbjct: 124 QVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRL 183
Query: 223 GQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQ 257
+R G T+I + H S V ++ H + +L G+
Sbjct: 184 NKR---GTTVIVATHDLSL-VDRVAHRVIILDDGR 214
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 95.8 bits (239), Expect = 9e-23
Identities = 62/178 (34%), Positives = 94/178 (52%), Gaps = 22/178 (12%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTS 117
+L D+ PG ++ + GPSGSGKTTLL L G L S Q G + + G + YG S
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTTLL-TLIGGLRS--VQEGSLKVLGQE---LYGAS 73
Query: 118 A-----------YVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGL 166
Y+ Q L+ LT ++ V + +LQ + + +ERA + +GL
Sbjct: 74 EKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQ--PNLSYQEARERARAMLEAVGL 131
Query: 167 QDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYV---MSRIAK 221
D ++ LSGGQK+RV+I+ ++ RPKL+ DEPT+ LDS + V M ++A+
Sbjct: 132 GDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAR 189
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 96.3 bits (240), Expect = 1e-22
Identities = 65/199 (32%), Positives = 101/199 (50%), Gaps = 9/199 (4%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTS 117
LED+ + G LL ++GPSG GKTTLL+ +AG + Q G I ++G
Sbjct: 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFV---PYQHGSITLDGKPVEGPGAER 72
Query: 118 AYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRL 177
V Q++ L+ V++ V + QL + K + E A ++++GL+ A I +L
Sbjct: 73 GVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRYIWQL 129
Query: 178 SGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIH 237
SGGQ++RV I+ + P+LL LDEP LD+ + + + KL Q G+ ++ H
Sbjct: 130 SGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQET--GKQVLLITH 187
Query: 238 QPSSEVFQLFHNLCLLSAG 256
VF + L LLS G
Sbjct: 188 DIEEAVF-MATELVLLSPG 205
|
Length = 255 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 97.8 bits (244), Expect = 1e-22
Identities = 57/211 (27%), Positives = 102/211 (48%), Gaps = 19/211 (9%)
Query: 69 GHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING---------HKKALAYGTSAY 119
G L+A++GPSG+GK+TLL +AG D G+I +NG + G +
Sbjct: 28 GELVALLGPSGAGKSTLLRIIAGLETPDA---GRIRLNGRVLFDVSNLAVRDRKVG---F 81
Query: 120 VTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSG 179
V Q L +TV + + + +++ + +++ + R E +R + L+ + +LSG
Sbjct: 82 VFQHYALFPHMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADRYPAQLSG 140
Query: 180 GQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQP 239
GQ++RV+++ + PK+L LDEP LD+ + + KL R G+ T + H
Sbjct: 141 GQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGV--TTVFVTHDQ 198
Query: 240 SSEVFQLFHNLCLLSAGQTVYFGPATAANEF 270
E +L + +L+ G+ GP +
Sbjct: 199 -EEALELADRVVVLNQGRIEQVGPPDEVYDH 228
|
Length = 345 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 97.9 bits (244), Expect = 2e-22
Identities = 61/212 (28%), Positives = 95/212 (44%), Gaps = 31/212 (14%)
Query: 68 PGH-LLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING--------------HKKAL 112
PG + AI G SGSGKTTL+ +AG G+I++NG K+ +
Sbjct: 21 PGQGVTAIFGRSGSGKTTLIRLIAGLT---RPDEGEIVLNGRTLFDSRKGIFLPPEKRRI 77
Query: 113 AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNT 172
Y V Q+ L L+V+ + Y + P + V I +G+ +
Sbjct: 78 GY-----VFQEARLFPHLSVRGNLRYG----MKRARPSERRISFERV-IELLGIGHLLGR 127
Query: 173 RIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTI 232
RLSGG+K+RV+I +L+ P+LL +DEP + LD Y ++ + +L G I
Sbjct: 128 LPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERL--HAEFGIPI 185
Query: 233 IASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264
+ H EV +L + +L G+ GP
Sbjct: 186 LYVSHSL-QEVLRLADRVVVLEDGRVAAAGPI 216
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 95.5 bits (238), Expect = 2e-22
Identities = 53/194 (27%), Positives = 98/194 (50%), Gaps = 21/194 (10%)
Query: 52 KKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING---- 107
K L++++ + G I+GP+GSGK+ LL+ +AG + D+ GKIL+NG
Sbjct: 8 KDWKEFKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDS---GKILLNGKDIT 64
Query: 108 ----HKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIRE 163
K+ ++Y V Q+ L +TV + + Y + + + K + + +
Sbjct: 65 NLPPEKRDISY-----VPQNYALFPHMTVYKNIAYGLKKRK---VDKKEIERKVLEIAEM 116
Query: 164 MGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLG 223
+G+ +N + LSGG+++RV+I+ ++ PK+L LDEP S LD + + K+
Sbjct: 117 LGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIR 176
Query: 224 QRDGIGRTIIASIH 237
+ G+ T++ H
Sbjct: 177 KEFGV--TVLHVTH 188
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 93.0 bits (232), Expect = 3e-22
Identities = 54/196 (27%), Positives = 80/196 (40%), Gaps = 50/196 (25%)
Query: 69 GHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTS-------AYVT 121
G ++A++GPSGSGK+TLL +AG + +G ILI+G V
Sbjct: 26 GEIVALLGPSGSGKSTLLRCIAGL---EEPDSGSILIDGEDLTDLEDELPPLRRRIGMVF 82
Query: 122 QDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQ 181
QD L LTV E + LSGGQ
Sbjct: 83 QDFALFPHLTVLENIAL-------------------------------------GLSGGQ 105
Query: 182 KRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSS 241
++RV+++ + P +L LDEPTS LD V + + L + GI T++ H
Sbjct: 106 QQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGI--TVVLVTHDL-D 162
Query: 242 EVFQLFHNLCLLSAGQ 257
E +L + +L G+
Sbjct: 163 EAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 96.9 bits (242), Expect = 3e-22
Identities = 60/229 (26%), Positives = 109/229 (47%), Gaps = 25/229 (10%)
Query: 49 SNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRL--GSDTRQTGKILIN 106
G+ + L+D++ G + I+G SG+GK+TLL RL + +G + ++
Sbjct: 12 GQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLL-----RLINLLERPTSGSVFVD 66
Query: 107 GHKKALAYGTSA---------YVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERA 157
G + A + + Q L+++ TV E V + +L +PK++ K+R
Sbjct: 67 G-QDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELA---GVPKAEIKQRV 122
Query: 158 EVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMS 217
+ +GL D + +LSGGQK+RV+I+ + PK+L DE TS LD + ++
Sbjct: 123 AELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILE 182
Query: 218 RIAKLGQRDGIGRTIIASIHQPSSEVFQLF-HNLCLLSAGQTVYFGPAT 265
+ + + G+ TI+ H+ EV + + +L G+ V G +
Sbjct: 183 LLKDINRELGL--TIVLITHEM--EVVKRICDRVAVLDQGRLVEEGTVS 227
|
Length = 339 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 95.5 bits (238), Expect = 5e-22
Identities = 59/213 (27%), Positives = 106/213 (49%), Gaps = 15/213 (7%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA 113
G +++++ PG + ++GP+G+GKTT + G L G+I NG L+
Sbjct: 13 GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTE---GEITWNG--GPLS 67
Query: 114 YGTSA---YVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAM 170
Y+ ++ L +TV++ + Y A+L+ MPK++ +++ + + + +
Sbjct: 68 QEIKNRIGYLPEERGLYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKK 124
Query: 171 NTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGR 230
+I+ LS G ++++ ++ P+LL LDEP SGLD + I +L + G
Sbjct: 125 TKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEE---GA 181
Query: 231 TIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263
TII S H+ V +L L +L GQTV +G
Sbjct: 182 TIIFSSHR-MEHVEELCDRLLMLKKGQTVLYGT 213
|
Length = 300 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 92.8 bits (231), Expect = 5e-22
Identities = 54/207 (26%), Positives = 88/207 (42%), Gaps = 25/207 (12%)
Query: 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDT 97
L ++L +G + E L+ G L + GP+G GKTTLL LAG L D+
Sbjct: 1 LAARNLAC------SRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDS 54
Query: 98 RQTGKILING---HKKALAYG-TSAYVTQDDTLITTLTVKEAV-YYSAQLQLPDTMPKSD 152
G++ NG ++ Y+ L L+ E + +++A
Sbjct: 55 ---GEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTI--- 108
Query: 153 KKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAAS 212
E + +GL + +LS GQ+RR++++ L+R L LDEPT+ LD A
Sbjct: 109 -----EDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGV 163
Query: 213 YYVMSRIAKLGQRDGIGRTIIASIHQP 239
+ + R GI ++ + HQ
Sbjct: 164 ALLAGLLRAHLARGGI---VLLTTHQD 187
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 93.6 bits (233), Expect = 6e-22
Identities = 60/214 (28%), Positives = 105/214 (49%), Gaps = 27/214 (12%)
Query: 68 PGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAY------VT 121
G ++AI+GPSG+GK+TLL+ +AG T +G+ILING + +
Sbjct: 24 AGEIVAILGPSGAGKSTLLNLIAGFE---TPASGEILINGVDHT---ASPPAERPVSMLF 77
Query: 122 QDDTLITTLTVKEAVYY--SAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSG 179
Q++ L LTV + + S L+L ++++E+ E ++GL + LSG
Sbjct: 78 QENNLFAHLTVAQNIGLGLSPGLKL-----NAEQREKVEAAAAQVGLAGFLKRLPGELSG 132
Query: 180 GQKRRVSISIEILTRPK-LLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQ 238
GQ++RV+++ L R + +L LDEP S LD A +++ +++L D T++ H
Sbjct: 133 GQRQRVALA-RCLVREQPILLLDEPFSALDPALRAEMLALVSQL--CDERKMTLLMVTHH 189
Query: 239 PSSEVFQLFHNLCLLSAGQTVYFGPATAANEFFA 272
P + ++ + L G+ G E +
Sbjct: 190 P-EDAARIADRVVFLDNGRIAAQGS---TQELLS 219
|
Length = 231 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 93.0 bits (232), Expect = 6e-22
Identities = 55/162 (33%), Positives = 87/162 (53%), Gaps = 12/162 (7%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING-----H 108
G +L+ + K G ++ I+GPSGSGK+TLL + L + +G I+I+G
Sbjct: 11 GDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCIN-LL--EEPDSGTIIIDGLKLTDD 67
Query: 109 KKALAYGTS--AYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGL 166
KK + V Q L LTV E + A +++ M K++ +ERA + ++GL
Sbjct: 68 KKNINELRQKVGMVFQQFNLFPHLTVLENITL-APIKV-KGMSKAEAEERALELLEKVGL 125
Query: 167 QDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208
D + +LSGGQ++RV+I+ + PK++ DEPTS LD
Sbjct: 126 ADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALD 167
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 90.1 bits (224), Expect = 8e-22
Identities = 42/130 (32%), Positives = 64/130 (49%), Gaps = 18/130 (13%)
Query: 83 TTLLDALAGRLGSDTRQTGKILINGH-----KKALAYGTS-AYVTQDDTLITTLTVKEAV 136
+TLL + G L +G IL++G V QD L LTV+E +
Sbjct: 1 STLLKLITGLL---QPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENL 57
Query: 137 YYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNT-RIRRLSGGQKRRVSISIEILTRP 195
++ + + RAE + +GL D ++ + LSGGQK+RV+I+ +L +P
Sbjct: 58 FFG--------LRDKEADARAEEALERVGLPDFLDREPVGTLSGGQKQRVAIARALLKKP 109
Query: 196 KLLFLDEPTS 205
KLL LDEPT+
Sbjct: 110 KLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 97.3 bits (243), Expect = 1e-21
Identities = 56/242 (23%), Positives = 107/242 (44%), Gaps = 39/242 (16%)
Query: 15 LEMESSNKTANSLINVNEDDGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAI 74
LE + + V + + ++ ++L+ G + L DL K G L A+
Sbjct: 298 LESPVATPGSGEKAEVANEPPIEISLENLSFR----YPDGKPA-LSDLNLTIKAGQLTAL 352
Query: 75 MGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH-----KKALAYGTSAYVTQDDTLITT 129
+G SG+GK+TLL+ L G L G+I +NG ++V+Q+ +
Sbjct: 353 VGASGAGKSTLLNLLLGFL---APTQGEIRVNGIDLRDLSPEAWRKQISWVSQN-PYLFA 408
Query: 130 LTVKEAVYYSAQLQLPDTMPKSD-KKERAEVTIREMGLQD------AMNTRI----RRLS 178
T++E + + + D E + + GL + ++T I LS
Sbjct: 409 GTIRENI----------LLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLS 458
Query: 179 GGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQ 238
GGQ +R++++ +L+ LL LDEPT+ LD+ ++ + +L ++ +T++ H+
Sbjct: 459 GGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQ----KTVLVITHR 514
Query: 239 PS 240
Sbjct: 515 LE 516
|
Length = 559 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 94.8 bits (236), Expect = 1e-21
Identities = 63/254 (24%), Positives = 108/254 (42%), Gaps = 37/254 (14%)
Query: 41 KDLTVTIVSNGKKGS---------SSI--LEDLTGYAKPGHLLAIMGPSGSGKTTLLDAL 89
K+ V I G KGS SI ++D++ G ++ +G +G+GK+T L L
Sbjct: 11 KNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKML 70
Query: 90 AGRLGSDTRQTGKILINGH-----KKALAYGTSAYVTQDDTLI------TTLTVKEAVYY 138
G L + GK+ +NG ++ + Q L +L V + +Y
Sbjct: 71 TGLLLPTS---GKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIY- 126
Query: 139 SAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLL 198
+P + ER + + L+ + +R+LS GQ+ R ++ +L PK+L
Sbjct: 127 --------EIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVL 178
Query: 199 FLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQT 258
FLDEPT GLD A + + + + T++ + H ++ L + L+ GQ
Sbjct: 179 FLDEPTVGLDVNAQANIREFLKEYNEERQA--TVLLTTHI-FDDIATLCDRVLLIDQGQL 235
Query: 259 VYFGPATAANEFFA 272
V+ G E F
Sbjct: 236 VFDGTLAQLQEQFG 249
|
Length = 325 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 92.5 bits (231), Expect = 2e-21
Identities = 62/224 (27%), Positives = 109/224 (48%), Gaps = 29/224 (12%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING------ 107
G L ++ + G ++A++G +G+GKTTLL + G + ++G+I+ +G
Sbjct: 14 GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLV---RPRSGRIIFDGEDITGL 70
Query: 108 --HKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREM- 164
H++A G AYV + + LTV+E L L + DK+ + + E+
Sbjct: 71 PPHERARL-GI-AYVPEGRRIFPRLTVEE------NLLLG-AYARRDKEAQERD-LEEVY 120
Query: 165 ----GLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIA 220
L++ N R LSGG+++ ++I+ +++RPKLL LDEP+ GL + I
Sbjct: 121 ELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIK 180
Query: 221 KLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264
+L R G TI+ + Q + ++ +L G+ V G A
Sbjct: 181 EL--RKEGGMTILL-VEQNARFALEIADRGYVLENGRIVLSGTA 221
|
Length = 237 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 94.7 bits (236), Expect = 2e-21
Identities = 61/206 (29%), Positives = 98/206 (47%), Gaps = 34/206 (16%)
Query: 73 AIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING--------------HKKALAYGTSA 118
A+ GPSGSGKT+L++ +AG D G+I +NG K+ + Y
Sbjct: 28 ALFGPSGSGKTSLINMIAGLTRPDE---GRIELNGRVLVDAEKGIFLPPEKRRIGY---- 80
Query: 119 YVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLS 178
V QD L TV+ + Y M KS + + ++ + +G++ ++ LS
Sbjct: 81 -VFQDARLFPHYTVRGNLRYG--------MWKSMRAQFDQL-VALLGIEHLLDRYPGTLS 130
Query: 179 GGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQ 238
GG+K+RV+I +LT P+LL +DEP + LD ++ + +L RD I I+ H
Sbjct: 131 GGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERL--RDEINIPILYVSHS 188
Query: 239 PSSEVFQLFHNLCLLSAGQTVYFGPA 264
EV +L + +L G+ GP
Sbjct: 189 L-DEVLRLADRVVVLENGKVKASGPL 213
|
Length = 352 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 90.9 bits (226), Expect = 2e-21
Identities = 60/195 (30%), Positives = 96/195 (49%), Gaps = 23/195 (11%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA 113
G +L+ L A+ G +LA++G +G+GK+TLL L G L Q+G +LI+G + L
Sbjct: 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRP---QSGAVLIDG--EPLD 57
Query: 114 YGTS---------AYVTQD-DTLITTLTVKEAVYYSA-QLQLPDTMPKSDKKERAEVTIR 162
Y V QD D + V + V + L L + ++ + R +
Sbjct: 58 YSRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSE----AEVERRVREALT 113
Query: 163 EMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKL 222
+G LSGG+K+RV+I+ + RP +L LDEPT+GLD A +++ + +L
Sbjct: 114 AVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRL 173
Query: 223 GQRDGIGRTIIASIH 237
R G T++ S H
Sbjct: 174 --RAE-GMTVVISTH 185
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 91.3 bits (227), Expect = 3e-21
Identities = 51/190 (26%), Positives = 92/190 (48%), Gaps = 23/190 (12%)
Query: 59 LEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING------HKKAL 112
L+ + G + ++GPSG+GK+TLL + + +G I +NG +A+
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKE---ELPTSGTIRVNGQDVSDLRGRAI 73
Query: 113 AY-----GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ 167
Y G V QD L+ V E V ++ L++ P+ + ++R + +GL
Sbjct: 74 PYLRRKIGV---VFQDFRLLPDRNVYENVAFA--LEVTGVPPR-EIRKRVPAALELVGLS 127
Query: 168 DAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDG 227
LSGG+++RV+I+ I+ P +L DEPT LD ++ +M+ + K+ +
Sbjct: 128 HKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKA-- 185
Query: 228 IGRTIIASIH 237
G T++ + H
Sbjct: 186 -GTTVVVATH 194
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 90.7 bits (226), Expect = 4e-21
Identities = 55/204 (26%), Positives = 87/204 (42%), Gaps = 21/204 (10%)
Query: 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDT 97
L +DL +G + L+ G L + GP+GSGKTTLL +AG L
Sbjct: 3 LEGEDLACV------RGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPA- 55
Query: 98 RQTGKILINGHKKAL-AYGTS-AYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKE 155
G I ++G + Y+ + + LTV E + + A ++
Sbjct: 56 --AGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAF-------LGGEEL 106
Query: 156 RAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYV 215
+ +GL + LS GQKRRV+++ +++ + LDEPT+ LD+AA
Sbjct: 107 DIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALF 166
Query: 216 MSRIAKLGQRDGIGRTIIASIHQP 239
I + GI +IA+ H P
Sbjct: 167 AELIRAHLAQGGI---VIAATHIP 187
|
Length = 207 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 91.1 bits (227), Expect = 4e-21
Identities = 57/198 (28%), Positives = 93/198 (46%), Gaps = 17/198 (8%)
Query: 48 VSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING 107
VS G L D++ + G + + GPSG+GK+TLL + G + GKIL+NG
Sbjct: 7 VSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLI---YGEERPTRGKILVNG 63
Query: 108 HKKALAYGTS--------AYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEV 159
H + G V QD L+ TV E V ++ P + + R
Sbjct: 64 HDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRRVSE 120
Query: 160 TIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRI 219
+ +GL+ +LSGG+++RV+I+ I+ +P +L DEPT LD S+ +M
Sbjct: 121 VLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLF 180
Query: 220 AKLGQRDGIGRTIIASIH 237
++ + G T++ + H
Sbjct: 181 EEINRL---GTTVLMATH 195
|
Length = 223 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 91.3 bits (227), Expect = 4e-21
Identities = 64/199 (32%), Positives = 96/199 (48%), Gaps = 23/199 (11%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH----- 108
G SIL+ + K G +AI+GPSGSGK+TLL LAG D +G++ + G
Sbjct: 21 GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGL---DDPSSGEVRLLGQPLHKL 77
Query: 109 ----KKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREM 164
+ AL +V Q LI LT E V +L+ + +D + A+ + +
Sbjct: 78 DEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESS---ADSRAGAKALLEAV 134
Query: 165 GLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKL-- 222
GL + +LSGG+++RV+++ RP +LF DEPT LD A +IA L
Sbjct: 135 GLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATG----DKIADLLF 190
Query: 223 -GQRDGIGRTIIASIHQPS 240
R+ G T++ H P
Sbjct: 191 ALNRE-RGTTLVLVTHDPQ 208
|
Length = 228 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 90.6 bits (225), Expect = 5e-21
Identities = 60/199 (30%), Positives = 101/199 (50%), Gaps = 16/199 (8%)
Query: 69 GHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVT---QDDT 125
G + AI+GPSGSGK+TLL+ +AG +T Q+G++LING A V+ Q++
Sbjct: 24 GEITAIVGPSGSGKSTLLNLIAG---FETPQSGRVLINGVDVTAAPPADRPVSMLFQENN 80
Query: 126 LITTLTVKEAVYY--SAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKR 183
L LTV++ V S L+L ++ ++ EV + +GL LSGG+++
Sbjct: 81 LFAHLTVEQNVGLGLSPGLKL-----TAEDRQAIEVALARVGLAGLEKRLPGELSGGERQ 135
Query: 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEV 243
RV+++ ++ +L LDEP + LD A ++ + L + T++ HQP +
Sbjct: 136 RVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKM--TVLMVTHQP-EDA 192
Query: 244 FQLFHNLCLLSAGQTVYFG 262
+L + L G+ G
Sbjct: 193 KRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 5e-21
Identities = 58/206 (28%), Positives = 95/206 (46%), Gaps = 28/206 (13%)
Query: 41 KDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQT 100
+ T T G L L+ G + ++G +G+GK+TLL+A+AG L +
Sbjct: 5 SNATKT-FFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTS--- 60
Query: 101 GKILING--------HKKALAYGTSAYVTQD--DTLITTLTVKEAVYYSAQ--------L 142
G+ILI+G K+A A V QD LT++E + +
Sbjct: 61 GQILIDGVDVTKKSVAKRA---NLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSS 117
Query: 143 QLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDE 202
L + S R + +GL++ ++ RI LSGGQ++ +S+ + L PK+L LDE
Sbjct: 118 ALNERRRSSF---RERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDE 174
Query: 203 PTSGLDSAASYYVMSRIAKLGQRDGI 228
T+ LD + +VM AK+ + +
Sbjct: 175 HTAALDPKTAEFVMELTAKIVEEHKL 200
|
Length = 263 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 90.3 bits (224), Expect = 7e-21
Identities = 49/162 (30%), Positives = 80/162 (49%), Gaps = 7/162 (4%)
Query: 52 KKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKA 111
+ S +L ++ G ++ +MGPSG GK+TLL + G L TG++ +N +
Sbjct: 11 RLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLD 70
Query: 112 LAYGTSAYVT---QDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD 168
+ + QD L L+V + + ++ LP T+ + ++ A + GL
Sbjct: 71 MLPAAQRQIGILFQDALLFPHLSVGQNLLFA----LPATLKGNARRNAANAALERSGLDG 126
Query: 169 AMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSA 210
A + LSGGQ+ RV++ +L +PK L LDEP S LD A
Sbjct: 127 AFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVA 168
|
Length = 213 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 90.3 bits (225), Expect = 1e-20
Identities = 62/221 (28%), Positives = 98/221 (44%), Gaps = 28/221 (12%)
Query: 67 KPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVT----- 121
+PG ++ ++GP+G+GKTTL + + G + G ++ G G +
Sbjct: 28 RPGEIVGLIGPNGAGKTTLFNLITGFYKPSS---GTVIFRG---RDITGLPPHRIARLGI 81
Query: 122 ----QDDTLITTLTVKEAV--------YYSAQLQLPDTMPKSDK-KERAEVTIREMGLQD 168
Q L LTV E V S L P + + +ERA + +GL +
Sbjct: 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGE 141
Query: 169 AMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGI 228
+ LS GQ+RR+ I+ + T+PKLL LDEP +GL+ + + I +L RD
Sbjct: 142 LADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIREL--RDRG 199
Query: 229 GRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG-PATAAN 268
G TI+ H V L + +L+ G+ + G P N
Sbjct: 200 GVTILLIEHDMKL-VMGLADRIVVLNYGEVIAEGTPEEVRN 239
|
Length = 250 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 89.7 bits (223), Expect = 1e-20
Identities = 63/215 (29%), Positives = 107/215 (49%), Gaps = 14/215 (6%)
Query: 52 KKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING---- 107
K + ++ ++ KPG + ++GP+G+GKTT L LAG L D G ++G
Sbjct: 14 VKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDA---GFATVDGFDVV 70
Query: 108 HKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ 167
+ A A +V+ L LT +E + Y A L + + R E +G++
Sbjct: 71 KEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGME 127
Query: 168 DAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDG 227
+ ++ R+ S G +++V+I+ ++ P +L LDEPT+GLD A+ + I +L R
Sbjct: 128 ELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQL--RAL 185
Query: 228 IGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262
G+ I+ S H EV +L + +L G+ VY G
Sbjct: 186 -GKCILFSTHI-MQEVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 89.4 bits (223), Expect = 2e-20
Identities = 61/221 (27%), Positives = 104/221 (47%), Gaps = 25/221 (11%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING------ 107
G S IL ++ G ++A++G +G+GKTTLL + G L ++G I +G
Sbjct: 11 GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLL---PPRSGSIRFDGRDITGL 67
Query: 108 --HKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREM- 164
H++A A G YV + + LTV+E L L + K++ + E+
Sbjct: 68 PPHERARA-GI-GYVPEGRRIFPELTVEE------NLLLGAYARRRAKRKARLERVYELF 119
Query: 165 -GLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLG 223
L++ LSGG+++ ++I+ +++RPKLL LDEP+ GL + I +L
Sbjct: 120 PRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELR 179
Query: 224 QRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264
G TI+ + Q + ++ +L G+ V G A
Sbjct: 180 DE---GVTILL-VEQNARFALEIADRAYVLERGRVVLEGTA 216
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 89.6 bits (223), Expect = 2e-20
Identities = 61/229 (26%), Positives = 111/229 (48%), Gaps = 21/229 (9%)
Query: 45 VTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRL--GSDTRQTGK 102
V+ V G + L+D++ G + I+G SG+GK+TL+ R G + +G
Sbjct: 7 VSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLI-----RCINGLERPTSGS 61
Query: 103 ILING------HKKAL--AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKK 154
+L++G K L A + Q L+++ TV E V ++ +PK++ +
Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEI---AGVPKAEIE 118
Query: 155 ERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYY 214
ER + +GL+D + +LSGGQK+RV I+ + PK+L DE TS LD +
Sbjct: 119 ERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQS 178
Query: 215 VMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263
+++ + + + G+ TI+ H+ V ++ + ++ G+ V G
Sbjct: 179 ILALLRDINRELGL--TIVLITHEMEV-VKRICDRVAVMEKGEVVEEGT 224
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 88.7 bits (220), Expect = 4e-20
Identities = 53/169 (31%), Positives = 89/169 (52%), Gaps = 13/169 (7%)
Query: 47 IVSNGKK--GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKIL 104
++N K GS L+D+ G L+A++GPSGSGK+TLL +AG + +G+I
Sbjct: 2 EIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGL---EQPDSGRIR 58
Query: 105 ING----HKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVT 160
+NG A +V Q L LTV++ + + +++ PK+ K R E
Sbjct: 59 LNGQDATRVHARDRKI-GFVFQHYALFKHLTVRDNIAFGLEIRKH---PKAKIKARVEEL 114
Query: 161 IREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDS 209
+ + L+ + +LSGGQ++RV+++ + P++L LDEP LD+
Sbjct: 115 LELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDA 163
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 2e-19
Identities = 49/173 (28%), Positives = 82/173 (47%), Gaps = 13/173 (7%)
Query: 69 GHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH----KKALAYGTSAYVTQDD 124
G + +GP+G+GKTT + L L + G + G+ + + V Q
Sbjct: 19 GEVFGFLGPNGAGKTTTIRMLTTLLRPTS---GTARVAGYDVVREPRKVRRSIGIVPQYA 75
Query: 125 TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRR 184
++ LT +E + +L +PK + +ERAE + L +A + + SGG +RR
Sbjct: 76 SVDEDLTGRENLEMMGRLY---GLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRR 132
Query: 185 VSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIH 237
+ I+ ++ +P +LFLDEPT+GLD + I L G TI+ + H
Sbjct: 133 LDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRAL---KEEGVTILLTTH 182
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 86.4 bits (214), Expect = 3e-19
Identities = 49/151 (32%), Positives = 85/151 (56%), Gaps = 4/151 (2%)
Query: 59 LEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSA 118
L+ + + G ++++G SG GK+TLL+ ++G +G +++ G +
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGL---AQPTSGGVILEGKQITEPGPDRM 57
Query: 119 YVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLS 178
V Q+ +L+ LTV+E + + LPD + KS+++ E I +GL +A + R +LS
Sbjct: 58 VVFQNYSLLPWLTVRENIALAVDRVLPD-LSKSERRAIVEEHIALVGLTEAADKRPGQLS 116
Query: 179 GGQKRRVSISIEILTRPKLLFLDEPTSGLDS 209
GG K+RV+I+ + RPK+L LDEP LD+
Sbjct: 117 GGMKQRVAIARALSIRPKVLLLDEPFGALDA 147
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 90.4 bits (225), Expect = 3e-19
Identities = 62/196 (31%), Positives = 99/196 (50%), Gaps = 25/196 (12%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTS 117
+LEDL+ PG +AI+G SGSGK+TLL L G Q G+IL++G S
Sbjct: 488 VLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLY---KPQQGRILLDGVDLNDIDLAS 544
Query: 118 -----AYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVT-IRE--MGLQDA 169
YV QD L + +++E + L P+ + E A++ E L
Sbjct: 545 LRRQVGYVLQDPFLFSG-SIRENI----ALGNPEA-TDEEIIEAAQLAGAHEFIENLPMG 598
Query: 170 MNTRIRR----LSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQR 225
+T + LSGGQ++R++++ +L++PK+L LDE TS LD ++ + ++ Q
Sbjct: 599 YDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ- 657
Query: 226 DGIGRTIIASIHQPSS 241
GRT+I H+ S+
Sbjct: 658 ---GRTVIIIAHRLST 670
|
Length = 709 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 4e-19
Identities = 58/187 (31%), Positives = 88/187 (47%), Gaps = 23/187 (12%)
Query: 66 AKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA-----YGTSAYV 120
PG +A++GPSG+GK+TLL+ L G + G I +NG A A A+V
Sbjct: 345 VPPGERVALVGPSGAGKSTLLNLLLGFVDPTE---GSIAVNGVPLADADADSWRDQIAWV 401
Query: 121 TQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKK--ERAEVTIREMGLQDAMNTRI---- 174
Q L T+ E + +L PD ++ ERA + L ++T I
Sbjct: 402 PQHPFLFAG-TIAENI----RLARPDASDAEIREALERAGLDEFVAALPQGLDTPIGEGG 456
Query: 175 RRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIA 234
LSGGQ +R++++ L LL LDEPT+ LD+ V+ + L Q GRT++
Sbjct: 457 AGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQ----GRTVLL 512
Query: 235 SIHQPSS 241
H+ +
Sbjct: 513 VTHRLAL 519
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 5e-19
Identities = 63/231 (27%), Positives = 104/231 (45%), Gaps = 25/231 (10%)
Query: 45 VTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKIL 104
V++ NGKK IL DL+ PG AI+GP+G+GKTTLL L G +G +
Sbjct: 37 VSVRRNGKK----ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEH---PPSSGDVT 89
Query: 105 INGH-----------KKALAYGTSAYVTQDDTLITTLTVKEAVY--YSAQLQLPDTMPKS 151
+ G +K + +S + TV++ V + A + + +
Sbjct: 90 LLGRRFGKGETIFELRKRIGLVSSE---LHERFRVRETVRDVVLSGFFASIGIYQEDLTA 146
Query: 152 DKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAA 211
+ A+ + +G + + LS G++RRV I+ ++ P+LL LDEP GLD A
Sbjct: 147 EDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIA 206
Query: 212 SYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262
+++R+ +L G ++ H E+ F + LL G+ V G
Sbjct: 207 REQLLNRLEELAASPG-APALLFVTHHA-EEIPPCFTHRLLLKEGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 5e-19
Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 19/174 (10%)
Query: 67 KPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTS-------AY 119
+ G L ++G SGSGK+TL LAG L +G I+ +G L G
Sbjct: 315 REGETLGLVGESGSGKSTLARILAGLL---PPSSGSIIFDGQDLDLTGGELRRLRRRIQM 371
Query: 120 VTQD--DTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGL-QDAMNTRIRR 176
V QD +L +TV + + L++ ++++ R + +GL + ++
Sbjct: 372 VFQDPYSSLNPRMTVGDILAEP--LRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHE 429
Query: 177 LSGGQKRRVSISIEILTRPKLLFLDEPTSGLD--SAASYYVMSRIAKLGQRDGI 228
LSGGQ++RV+I+ + PKLL LDEP S LD A V++ + L + G+
Sbjct: 430 LSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQ--VLNLLKDLQEELGL 481
|
Length = 539 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 5e-19
Identities = 55/211 (26%), Positives = 103/211 (48%), Gaps = 19/211 (9%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING---HKK 110
G +L+D++ + K G + +GP+G+GKTT + + G + D+ G+I +G K
Sbjct: 11 GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDS---GEITFDGKSYQKN 67
Query: 111 ALAYGTSAYVTQDDTLITTLTVKEAVYYSA-QLQLPDTMPKSDKKERAEVTIREMGLQDA 169
A + + LT +E + A L + K+R + + +GL+D+
Sbjct: 68 IEALRRIGALIEAPGFYPNLTARENLRLLARLLGIR--------KKRIDEVLDVVGLKDS 119
Query: 170 MNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIG 229
+++ S G K+R+ I++ +L P LL LDEPT+GLD + I L + G
Sbjct: 120 AKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQ---G 176
Query: 230 RTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260
T++ S H SE+ ++ + +++ G+ +
Sbjct: 177 ITVLISSHL-LSEIQKVADRIGIINKGKLIE 206
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 85.9 bits (213), Expect = 8e-19
Identities = 62/181 (34%), Positives = 98/181 (54%), Gaps = 19/181 (10%)
Query: 66 AKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH-----KKAL--AYGTSA 118
A+ G ++A++GP+G+GK+TL G L + G++LI G KK+L T
Sbjct: 25 AEKGEMVALLGPNGAGKSTLFLHFNGILKPTS---GEVLIKGEPIKYDKKSLLEVRKTVG 81
Query: 119 YVTQ--DDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRR 176
V Q DD L TV+E V + L L + K + ++R + ++ +G++ N
Sbjct: 82 IVFQNPDDQLFAP-TVEEDVAFGP-LNL--GLSKEEVEKRVKEALKAVGMEGFENKPPHH 137
Query: 177 LSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASI 236
LSGGQK+RV+I+ + +P+++ LDEPTSGLD + +M + L + G TII S
Sbjct: 138 LSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKE---GITIIIST 194
Query: 237 H 237
H
Sbjct: 195 H 195
|
Length = 275 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 85.4 bits (211), Expect = 8e-19
Identities = 56/187 (29%), Positives = 97/187 (51%), Gaps = 21/187 (11%)
Query: 69 GHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH------------KKALAYGT 116
G ++A++GPSGSGK+TLL L+G + D I + G +K+ A
Sbjct: 30 GEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRAN-- 87
Query: 117 SAYVTQDDTLITTLTVKEAVYYSAQLQLP-----DTMPKSDKKERAEVTIREMGLQDAMN 171
+ Y+ Q L+ L+V E V A P + ++K+RA + +G+ +
Sbjct: 88 TGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAH 147
Query: 172 TRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRT 231
R+ LSGGQ++RV+I+ ++ + K++ DEP + LD ++ VM + + Q DGI T
Sbjct: 148 QRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGI--T 205
Query: 232 IIASIHQ 238
++ ++HQ
Sbjct: 206 VVVTLHQ 212
|
Length = 262 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 9e-19
Identities = 56/205 (27%), Positives = 99/205 (48%), Gaps = 15/205 (7%)
Query: 42 DLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTG 101
L + +S G G+ +L+ ++ PG +AI+GPSGSGK+TLL LAG L D Q G
Sbjct: 334 TLELRDLSAGYPGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLL--DPLQ-G 390
Query: 102 KILINGHKKALAYGTS-----AYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKER 156
++ ++G + + QD L T TV+E + + + + + ++
Sbjct: 391 EVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDT-TVRENLRLARPDATDEELWAALERVG 449
Query: 157 AEVTIREM--GLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYY 214
+R + GL + RLSGG+++R++++ +L +L LDEPT LD+ +
Sbjct: 450 LADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADE 509
Query: 215 VMSRIAKLGQRDGIGRTIIASIHQP 239
++ + GRT++ H
Sbjct: 510 LLEDLLAALS----GRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 84.5 bits (210), Expect = 1e-18
Identities = 67/231 (29%), Positives = 105/231 (45%), Gaps = 35/231 (15%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING------ 107
G S IL ++ G + ++G +G GKTTLL L G L ++G I ++G
Sbjct: 11 GQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLL---PVKSGSIRLDGEDITKL 67
Query: 108 --HKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLP-DTMPKSDKKERAEVTIREM 164
H++A A G AYV Q + LTV+E L +P+ +K E+
Sbjct: 68 PPHERARA-GI-AYVPQGREIFPRLTVEE------NLLTGLAALPRRSRKIPDEIYELFP 119
Query: 165 GLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGL------DSAASYYVMSR 218
L++ + R LSGGQ+++++I+ ++TRPKLL LDEPT G+ D V+ R
Sbjct: 120 VLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGR---VIRR 176
Query: 219 IAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANE 269
+ G G I+ Q +L ++ G+ V G +E
Sbjct: 177 LRAEG-----GMAILLV-EQYLDFARELADRYYVMERGRVVASGAGDELDE 221
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 86.5 bits (215), Expect = 1e-18
Identities = 48/161 (29%), Positives = 80/161 (49%), Gaps = 15/161 (9%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA 113
++ +L G L ++GPSG GKTT+L +AG D+ G+I+++G
Sbjct: 25 DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDS---GRIMLDGQDIT-- 79
Query: 114 YGTSA------YVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ 167
A V Q L +TV E V + ++Q P ++ R +R + L+
Sbjct: 80 -HVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLE 135
Query: 168 DAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208
+ + +LSGGQ++RV+I+ ++ +PK+L LDE S LD
Sbjct: 136 EFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALD 176
|
Length = 375 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 3e-18
Identities = 56/187 (29%), Positives = 94/187 (50%), Gaps = 11/187 (5%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA 113
G+ + L+DL G + ++GPSG GKTT L +AG L T G+I I G
Sbjct: 11 GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAG-LEEPTS--GRIYIGGRDVTDL 67
Query: 114 YGTS---AYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAM 170
A V Q+ L +TV + + + +L+ +PK + ER + ++ +
Sbjct: 68 PPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLL 124
Query: 171 NTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGR 230
+ + ++LSGGQ++RV++ I+ PK+ +DEP S LD+ + + + +L QR +G
Sbjct: 125 DRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQR--LGT 182
Query: 231 TIIASIH 237
T I H
Sbjct: 183 TTIYVTH 189
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 3e-18
Identities = 51/171 (29%), Positives = 83/171 (48%), Gaps = 15/171 (8%)
Query: 68 PGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH---------KKALAYGTSA 118
G ++AI+G SGSGK+TLL L G D +G++L NG + L
Sbjct: 30 KGEIVAIVGSSGSGKSTLLHLLGGL---DNPTSGEVLFNGQSLSKLSSNERAKLRNKKLG 86
Query: 119 YVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLS 178
++ Q L+ T E V A L + KERA + ++GL+ +N R LS
Sbjct: 87 FIYQFHHLLPDFTALENV---AMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELS 143
Query: 179 GGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIG 229
GG+++RV+I+ ++ +P L+ DEPT LD+ + + + +L +
Sbjct: 144 GGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTS 194
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 82.5 bits (204), Expect = 3e-18
Identities = 52/193 (26%), Positives = 87/193 (45%), Gaps = 19/193 (9%)
Query: 51 GKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKK 110
++ ++ L+ G L + GP+GSGKTTLL LAG G++L+NG
Sbjct: 8 CERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLA---GRVLLNGGPL 64
Query: 111 ALAYGTSA----YVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGL 166
+ A Y+ + TTL+V E + + + + E + +GL
Sbjct: 65 DFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQV---------EEALARVGL 115
Query: 167 QDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRD 226
+ + +LS GQ+RRV+++ +L+ L LDEPT+ LD A +A R
Sbjct: 116 NGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARG 175
Query: 227 GIGRTIIASIHQP 239
G+ ++ + HQ
Sbjct: 176 GM---VVLTTHQD 185
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.9 bits (206), Expect = 4e-18
Identities = 50/148 (33%), Positives = 79/148 (53%), Gaps = 11/148 (7%)
Query: 67 KPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAY------V 120
+ G ++ I+GPSGSGK+TLL L G L + +G I ++G V
Sbjct: 26 EKGEVVVIIGPSGSGKSTLLRCLNG-L--EEPDSGSITVDGEDVGDKKDILKLRRKVGMV 82
Query: 121 TQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGG 180
Q L LTV E V A +++ + K++ +E+A + ++GL D + +LSGG
Sbjct: 83 FQQFNLFPHLTVLENVTL-APVKVKK-LSKAEAREKALELLEKVGLADKADAYPAQLSGG 140
Query: 181 QKRRVSISIEILTRPKLLFLDEPTSGLD 208
Q++RV+I+ + PK++ DEPTS LD
Sbjct: 141 QQQRVAIARALAMDPKVMLFDEPTSALD 168
|
Length = 240 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 83.3 bits (206), Expect = 5e-18
Identities = 68/220 (30%), Positives = 106/220 (48%), Gaps = 21/220 (9%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING------ 107
G I++ + A PG L ++GP+GSGK+TLL LAG L D G + + G
Sbjct: 12 GGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGL 68
Query: 108 HKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPD-TMPKSDKKERAEVTIR---E 163
++A A A V QD LTV++ V A ++P ++ D A V R
Sbjct: 69 SRRARARRV-ALVEQDSDTAVPLTVRDVV---ALGRIPHRSLWAGDSPHDAAVVDRALAR 124
Query: 164 MGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLG 223
L + + LSGG+++RV ++ + PKLL LDEPT+ LD A ++ + +L
Sbjct: 125 TELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELA 184
Query: 224 QRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263
G T++A++H + H + +L G+ V GP
Sbjct: 185 ---ATGVTVVAALHDLNLAASYCDH-VVVLDGGRVVAAGP 220
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 84.5 bits (210), Expect = 1e-17
Identities = 61/217 (28%), Positives = 103/217 (47%), Gaps = 26/217 (11%)
Query: 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLG 94
L ++LTV G + D++ +PG +L I+G SGSGK+TL AL G L
Sbjct: 3 SPLLEVENLTVE--FATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLP 60
Query: 95 SDTRQT-GKILING--------HKKALAYGTS-AYVTQD--DTLITTLTV----KEAVYY 138
R T G+++++G + G A + QD +L +T+ +EA
Sbjct: 61 EGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREA--- 117
Query: 139 SAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRI--RRLSGGQKRRVSISIEILTRPK 196
L+L +++ ++RA + ++GL D +LSGG ++RV I++ + +PK
Sbjct: 118 ---LRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPK 174
Query: 197 LLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTII 233
LL DEPT+ LD ++ + L + G+ I
Sbjct: 175 LLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFI 211
|
Length = 539 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 81.1 bits (200), Expect = 1e-17
Identities = 52/176 (29%), Positives = 93/176 (52%), Gaps = 13/176 (7%)
Query: 69 GHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING--HKKALAYGTS-AYVTQDDT 125
G ++AIMGPSG+GK+TLL+ +AG + +G I +N H Y + + Q++
Sbjct: 24 GEIVAIMGPSGAGKSTLLNLIAGFI---EPASGSIKVNDQSHTGLAPYQRPVSMLFQENN 80
Query: 126 LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRV 185
L LTV++ + P ++++E+ +++G+ D ++ +LSGGQ++RV
Sbjct: 81 LFAHLTVRQNIGLGLH---PGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRV 137
Query: 186 SISIEILTRPK-LLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPS 240
+++ L RP +L LDEP S LD +++ + +L RT++ H S
Sbjct: 138 ALA-RCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSER--QRTLLMVTHHLS 190
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 83.5 bits (207), Expect = 1e-17
Identities = 57/185 (30%), Positives = 91/185 (49%), Gaps = 23/185 (12%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHK---- 109
G+ + L+D++ K G + ++GPSG GKTTLL +AG + + G I G
Sbjct: 15 GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGL---ERQTAGTIYQGGRDITRL 71
Query: 110 --KALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREM--- 164
+ YG V Q L LTV + + Y + + + E AE + E+
Sbjct: 72 PPQKRDYG---IVFQSYALFPNLTVADNIAYGLKNR------GMGRAEVAE-RVAELLDL 121
Query: 165 -GLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLG 223
GL + +LSGGQ++RV+++ + T P LL LDEP S LD+ ++ + I +L
Sbjct: 122 VGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQ 181
Query: 224 QRDGI 228
+R G+
Sbjct: 182 RRLGV 186
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 1e-17
Identities = 66/228 (28%), Positives = 105/228 (46%), Gaps = 27/228 (11%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING--------HK 109
++D+ + G L ++GPSGSGKTT L + RL T +G+ILI+G +
Sbjct: 16 AVDDVNLTIEEGEFLVLIGPSGSGKTTTL-KMINRLIEPT--SGEILIDGEDISDLDPVE 72
Query: 110 KALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGL--Q 167
G YV Q L LTV E + +L K K+RA+ + +GL
Sbjct: 73 LRRKIG---YVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPS 126
Query: 168 DAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDG 227
+ + LSGGQ++RV ++ + P +L +DEP LD + I +L +
Sbjct: 127 EYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKE-- 184
Query: 228 IGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP-----ATAANEF 270
+G+TI+ H E +L + ++ AG+ V + A AN+F
Sbjct: 185 LGKTIVFVTHD-IDEALKLADRIAVMDAGEIVQYDTPDEILANPANDF 231
|
Length = 309 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 82.5 bits (204), Expect = 1e-17
Identities = 53/200 (26%), Positives = 104/200 (52%), Gaps = 15/200 (7%)
Query: 43 LTVTIVSNGKK-GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTG 101
+++ + S K G+ + L++++ A+ G ++ +GP+G+GK+T + + G L D+ G
Sbjct: 1 MSIRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDS---G 57
Query: 102 KILINGH---KKALAYGTS-AYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERA 157
+ + G + + Y+ + + L + V+E + + A + M K+R
Sbjct: 58 SVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIY---GMKGQLLKQRV 114
Query: 158 EVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMS 217
E I +GL+ + +I +LS G ++RV ++ ++ PK+L LDEPT+GLD + +
Sbjct: 115 EEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRN 174
Query: 218 RIAKLGQRDGIGRTIIASIH 237
I +G+ +TII S H
Sbjct: 175 VIKNIGK----DKTIILSTH 190
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 81.4 bits (201), Expect = 1e-17
Identities = 56/197 (28%), Positives = 97/197 (49%), Gaps = 27/197 (13%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTS 117
IL++++ KPG ++ I+G SGSGK+TL L R G++L++GH ALA
Sbjct: 17 ILDNISLRIKPGEVVGIVGRSGSGKSTL-TKLIQRFYVPEN--GRVLVDGHDLALADPAW 73
Query: 118 -----AYVTQDDTLITTLTVKEAVYYSAQLQLPDT-MPKSDKKERAEVT-----IREM-- 164
V Q++ L ++++ + L D M E A++ I E+
Sbjct: 74 LRRQVGVVLQENVLFNR-SIRD------NIALADPGMSMERVIEAAKLAGAHDFISELPE 126
Query: 165 GLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQ 224
G + + LSGGQ++R++I+ ++ P++L DE TS LD + + +M + +
Sbjct: 127 GYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA 186
Query: 225 RDGIGRTIIASIHQPSS 241
GRT+I H+ S+
Sbjct: 187 ----GRTVIIIAHRLST 199
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 84.8 bits (210), Expect = 1e-17
Identities = 63/226 (27%), Positives = 103/226 (45%), Gaps = 20/226 (8%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH-----KKAL 112
+L+D++ +PG +AI+GPSGSGK+TL+ L +G+ILI+G
Sbjct: 344 VLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLY---DPTSGEILIDGIDIRDISLDS 400
Query: 113 AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREM--GLQDAM 170
V+QD L + T++E + + + ++ K A I + G +
Sbjct: 401 LRKRIGIVSQDPLLFSG-TIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIV 459
Query: 171 NTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGR 230
R LSGGQ++R++I+ +L P +L LDE TS LD+ + + KL + GR
Sbjct: 460 GERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLK----GR 515
Query: 231 TIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANEFFAFNGF 276
T + H+ S+ + +L G+ V G E A G
Sbjct: 516 TTLIIAHRLSTIKN--ADRIIVLDNGRIVERGTHE---ELLAKGGL 556
|
Length = 567 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 2e-17
Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 18/189 (9%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTS 117
+ DL+ G L I GP+G+GKTTLL LAG L D G++ G +
Sbjct: 17 LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDA---GEVYWQGEPIQNVRESY 73
Query: 118 A----YVTQDDTLITTLTVKEAV-YYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNT 172
Y+ + T LT E + ++ + + ++GL +
Sbjct: 74 HQALLYLGHQPGIKTELTALENLHFWQRFHGSGNA-------ATIWEALAQVGLAGLEDL 126
Query: 173 RIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTI 232
+ +LS GQ+RRV+++ L+ L LDEP + LD + + +A + GI +
Sbjct: 127 PVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGI---V 183
Query: 233 IASIHQPSS 241
+ + HQP
Sbjct: 184 LLTTHQPLP 192
|
Length = 209 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 3e-17
Identities = 55/196 (28%), Positives = 95/196 (48%), Gaps = 23/196 (11%)
Query: 56 SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTR----QTGKILINGHK-K 110
+L D++ G +A++GPSGSGK+TL++ + R +G+ILI+GH +
Sbjct: 15 PPVLRDISLDIPAGETVALVGPSGSGKSTLVNLI-------PRFYDVDSGRILIDGHDVR 67
Query: 111 ALAYGT----SAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREM-- 164
+ V+QD + TV E + Y + + ++ + A I E+
Sbjct: 68 DYTLASLRRQIGLVSQD-VFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPE 126
Query: 165 GLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQ 224
G + R +LSGGQ++R++I+ +L P +L LDE TS LD+ + V + + +L +
Sbjct: 127 GYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK 186
Query: 225 RDGIGRTIIASIHQPS 240
RT H+ S
Sbjct: 187 ----NRTTFVIAHRLS 198
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 3e-17
Identities = 61/208 (29%), Positives = 97/208 (46%), Gaps = 29/208 (13%)
Query: 48 VSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING 107
V+ +L+D++ G +AI+GPSGSGK+T+L L R D +G ILI+G
Sbjct: 6 VTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLF-RF-YDV-SSGSILIDG 62
Query: 108 H----------KKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERA 157
++A+ V QD L T+ + Y + + ++ K +
Sbjct: 63 QDIREVTLDSLRRAIGV-----VPQDTVLFND-TIGYNIRYGRPDATDEEVIEAAKAAQI 116
Query: 158 EVTIREMGLQDAMNT----RIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASY 213
I M D +T R +LSGG+K+RV+I+ IL P +L LDE TS LD+
Sbjct: 117 HDKI--MRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTER 174
Query: 214 YVMSRIAKLGQRDGIGRTIIASIHQPSS 241
+ + + + + GRT I H+ S+
Sbjct: 175 EIQAALRDVSK----GRTTIVIAHRLST 198
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 3e-17
Identities = 61/211 (28%), Positives = 110/211 (52%), Gaps = 32/211 (15%)
Query: 42 DLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTG 101
+L+ ++ G++ +L+ ++ +PG +LAI+GP+G+GK+TLL AL+G L D +G
Sbjct: 6 NLSYSL--AGRR----LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SG 56
Query: 102 KILINGHK------KALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKE 155
++ +NG + LA A + Q+ +L TV+E V Q+ + +E
Sbjct: 57 EVTLNGVPLNSWPPEELAR-HRAVLPQNSSLAFPFTVQEVV----QMGRIPHRSGREPEE 111
Query: 156 RAEVTIREMGLQD--AMNTR-IRRLSGGQKRRVSIS------IEILTRPKLLFLDEPTSG 206
+ + + D + R R LSGG+++RV ++ + + LFLDEPTS
Sbjct: 112 DERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSA 171
Query: 207 LDSAASYYVMSRIAKLGQRDGIGRTIIASIH 237
LD A ++ + R+A+ R+G ++A +H
Sbjct: 172 LDIAHQHHTL-RLARQLAREGGA--VLAVLH 199
|
Length = 259 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 80.6 bits (199), Expect = 4e-17
Identities = 65/193 (33%), Positives = 96/193 (49%), Gaps = 33/193 (17%)
Query: 67 KPGHLLAIMGPSGSGKTTLLDAL-------AGRLGSDTRQTGKILIN-----GHKKALAY 114
KPG ++AI+GPSGSGKTTLL + AG + + G I I+ +K L
Sbjct: 27 KPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTI-----RVGDITIDTARSLSQQKGLIR 81
Query: 115 GTS---AYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREM----GLQ 167
+V Q+ L TV E + ++ P + K + KE A RE+ GL
Sbjct: 82 QLRQHVGFVFQNFNLFPHRTVLENI-----IEGP-VIVKGEPKEEATARARELLAKVGLA 135
Query: 168 DAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDG 227
+ RRLSGGQ++RV+I+ + RP+++ DEPTS LD V++ I +L Q
Sbjct: 136 GKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEK- 194
Query: 228 IGRTIIASIHQPS 240
RT++ H+ S
Sbjct: 195 --RTMVIVTHEMS 205
|
Length = 250 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 81.4 bits (201), Expect = 5e-17
Identities = 46/143 (32%), Positives = 81/143 (56%), Gaps = 19/143 (13%)
Query: 74 IMGPSGSGKTTLLDALAGRLGSDTRQTGKILING--------HKKALAYGTSAYVTQDDT 125
++GPSG GKTTLL LAG + +G I+++G H + + V Q
Sbjct: 1 LLGPSGCGKTTLLRLLAG---FEQPDSGSIMLDGEDVTNVPPHLRHI--NM---VFQSYA 52
Query: 126 LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRV 185
L +TV+E V + +++ +P+++ K R +R + L++ + + +LSGGQ++RV
Sbjct: 53 LFPHMTVEENVAFGLKMR---KVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRV 109
Query: 186 SISIEILTRPKLLFLDEPTSGLD 208
+++ ++ +PK+L LDEP S LD
Sbjct: 110 ALARALVFKPKILLLDEPLSALD 132
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.2 bits (199), Expect = 5e-17
Identities = 63/216 (29%), Positives = 110/216 (50%), Gaps = 31/216 (14%)
Query: 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGS 95
L ++L+V + G ++L+D++ +PG ++AI+GP+G+GK+TLL AL+G L
Sbjct: 1 AMLEARNLSVRL------GGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSP 54
Query: 96 DTRQTGKILINGHKKA------LAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMP 149
D +G++ +NG A LA A + Q +L TV+E V P +
Sbjct: 55 D---SGEVRLNGRPLADWSPAELA-RRRAVLPQHSSLSFPFTVEEVVAMGR---APHGLS 107
Query: 150 KSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT-------RPKLLFLDE 202
+++ + ++ L +LSGG+++RV ++ +L P+ L LDE
Sbjct: 108 RAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLA-RVLAQLWEPDGPPRWLLLDE 166
Query: 203 PTSGLDSAASYYVMSRIAK-LGQRDGIGRTIIASIH 237
PTS LD A ++V+ R+A+ L G+ +I +H
Sbjct: 167 PTSALDLAHQHHVL-RLARQLAHERGLA--VIVVLH 199
|
Length = 258 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 81.0 bits (200), Expect = 6e-17
Identities = 57/215 (26%), Positives = 100/215 (46%), Gaps = 24/215 (11%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH----K 109
G +++ L+ + + G ++GP+G+GKTT L L LG G I + G +
Sbjct: 18 GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRML---LGLTHPDAGSISLCGEPVPSR 74
Query: 110 KALAYGTSAYVTQDDTLITTLTVKEAV-----YYSAQLQLPDTMPKSDKKERAEVTIREM 164
A V Q D L TV+E + Y+ + + + +
Sbjct: 75 ARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFG--------LSAAAARALVPPLLEFA 126
Query: 165 GLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQ 224
L++ + ++ LSGG KRR++++ ++ P +L LDEPT+GLD A + + R+ L
Sbjct: 127 KLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA 186
Query: 225 RDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTV 259
R G+TI+ + H E +L LC++ G+ +
Sbjct: 187 R---GKTILLTTHF-MEEAERLCDRLCVIEEGRKI 217
|
Length = 306 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 8e-17
Identities = 68/238 (28%), Positives = 106/238 (44%), Gaps = 23/238 (9%)
Query: 48 VSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING 107
V+ G + +L G L ++GPSGSGKTT + + RL T +G+I I+G
Sbjct: 6 VTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTM-KMINRLIEPT--SGEIFIDG 62
Query: 108 HKKALAYGTSA------YVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTI 161
+ YV Q L +TV+E + +L PK +ERA+ +
Sbjct: 63 -EDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLL---KWPKEKIRERADELL 118
Query: 162 REMGLQDA--MNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRI 219
+GL A + LSGGQ++RV ++ + P LL +DEP LD +
Sbjct: 119 ALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEF 178
Query: 220 AKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP-----ATAANEFFA 272
+L Q +G+TI+ H E F+L + ++ G+ V G + AN+F A
Sbjct: 179 KRLQQE--LGKTIVFVTHD-IDEAFRLADRIAIMKNGEIVQVGTPDEILRSPANDFVA 233
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 81.0 bits (200), Expect = 8e-17
Identities = 62/215 (28%), Positives = 105/215 (48%), Gaps = 18/215 (8%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING----HK 109
G +++ L+ G ++GP+G+GK+T+ + LG + GKI + G +
Sbjct: 52 GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMI---LGMTSPDAGKITVLGVPVPAR 108
Query: 110 KALAYGTSAYVTQDDTLITTLTVKE-AVYYSAQLQLPDTMPKSDKKERAEVTIREMG-LQ 167
LA V Q D L TV+E + + + + + E ++ E L+
Sbjct: 109 ARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGM-----STREIEAVIPSLLEFARLE 163
Query: 168 DAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDG 227
+ R+ LSGG KRR++++ ++ P+LL LDEPT+GLD A + + R+ L R
Sbjct: 164 SKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLAR-- 221
Query: 228 IGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262
G+TI+ + H E +L LC+L AG+ + G
Sbjct: 222 -GKTILLTTHF-MEEAERLCDRLCVLEAGRKIAEG 254
|
Length = 340 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.3 bits (201), Expect = 8e-17
Identities = 49/149 (32%), Positives = 76/149 (51%), Gaps = 15/149 (10%)
Query: 69 GHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING------HKKALA---YGTSAY 119
G + IMG SGSGK+TL+ L RL TR G+IL++G L +
Sbjct: 54 GEIFVIMGLSGSGKSTLVRLL-NRLIEPTR--GEILVDGKDIAKLSAAELRELRRKKISM 110
Query: 120 VTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSG 179
V Q L+ TV E V + ++Q +PK++++ERA + +GL+ + LSG
Sbjct: 111 VFQSFALLPHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYADKYPNELSG 167
Query: 180 GQKRRVSISIEILTRPKLLFLDEPTSGLD 208
G ++RV ++ + P +L +DE S LD
Sbjct: 168 GMQQRVGLARALANDPDILLMDEAFSALD 196
|
Length = 386 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 78.7 bits (195), Expect = 9e-17
Identities = 66/235 (28%), Positives = 115/235 (48%), Gaps = 24/235 (10%)
Query: 47 IVSNGKK--GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKIL 104
N K G ++ ++ K G ++ ++GP+G+GKTT + G + D+ GKIL
Sbjct: 2 RAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDS---GKIL 58
Query: 105 ING--------HKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKER 156
++G HK+A G Y+ Q+ ++ LTV+E + +++ + K +++E+
Sbjct: 59 LDGQDITKLPMHKRARL-GIG-YLPQEASIFRKLTVEENILAVLEIR---GLSKKEREEK 113
Query: 157 AEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVM 216
E + E + ++ LSGG++RRV I+ + T PK L LDEP +G+D A +
Sbjct: 114 LEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQ 173
Query: 217 SRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPAT--AANE 269
I L R GIG ++ + H E + ++ G+ + G AANE
Sbjct: 174 KIIKILKDR-GIG--VLITDHN-VRETLSITDRAYIIYEGKVLAEGTPEEIAANE 224
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 80.4 bits (198), Expect = 9e-17
Identities = 64/219 (29%), Positives = 105/219 (47%), Gaps = 26/219 (11%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH----K 109
G ++ DL+ G ++GP+G+GK+T+ L G + D GKI + G +
Sbjct: 15 GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITVLGEPVPSR 71
Query: 110 KALAYGTSAYVTQDDTLITTLTVKEAV-----YYSAQL-QLPDTMPKSDKKERAEVTIRE 163
LA V Q D L TV+E + Y+ ++ +P + R
Sbjct: 72 ARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFAR------- 124
Query: 164 MGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLG 223
L+ + R+ LSGG KRR++++ ++ P+LL LDEPT+GLD A + + R+ L
Sbjct: 125 --LESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLL 182
Query: 224 QRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262
R G+TI+ + H E +L LC+L +G+ + G
Sbjct: 183 AR---GKTILLTTHF-MEEAERLCDRLCVLESGRKIAEG 217
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 1e-16
Identities = 53/192 (27%), Positives = 101/192 (52%), Gaps = 17/192 (8%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHK---- 109
G+ +L+D++ G + +I+GP+G+GK+TLL ++ RL + +G+I I+G +
Sbjct: 12 GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLL-SMMSRLLK--KDSGEITIDGLELTST 68
Query: 110 --KALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTM--PKSDKKERAEVTIREMG 165
K LA S + Q++ + + LTV++ V + + P + + + I +
Sbjct: 69 PSKELAKKLSI-LKQENHINSRLTVRDLVGFG---RFPYSQGRLTKEDRRIINEAIEYLH 124
Query: 166 LQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQR 225
L+D + + LSGGQ++R I++ + + LDEP + LD S +M + +L
Sbjct: 125 LEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLA-- 182
Query: 226 DGIGRTIIASIH 237
D +G+TI+ +H
Sbjct: 183 DELGKTIVVVLH 194
|
Length = 252 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 2e-16
Identities = 50/188 (26%), Positives = 77/188 (40%), Gaps = 52/188 (27%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING---HKKALAY 114
+L +++ +PG LAI+GPSGSGK+TL + G L +G++ ++G +
Sbjct: 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLL---RPTSGRVRLDGADISQWDPNE 73
Query: 115 --GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNT 172
Y+ QDD L + +I E N
Sbjct: 74 LGDHVGYLPQDDELFSG------------------------------SIAE-------NI 96
Query: 173 RIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTI 232
LSGGQ++R+ ++ + P++L LDEP S LD + IA L G T
Sbjct: 97 ----LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAA---GATR 149
Query: 233 IASIHQPS 240
I H+P
Sbjct: 150 IVIAHRPE 157
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 77.9 bits (192), Expect = 2e-16
Identities = 51/161 (31%), Positives = 78/161 (48%), Gaps = 15/161 (9%)
Query: 57 SILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH-------- 108
SIL + K G +A++G SGSGK+TLL LAG D +G++ + G
Sbjct: 24 SILTGVELVVKRGETIALIGESGSGKSTLLAILAGL---DDGSSGEVSLVGQPLHQMDEE 80
Query: 109 -KKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ 167
+ L +V Q LI TL E V A L+ + A+ + ++GL
Sbjct: 81 ARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLG 137
Query: 168 DAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208
++ +LSGG+++RV+++ RP +LF DEPT LD
Sbjct: 138 KRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLD 178
|
Length = 228 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 77.6 bits (192), Expect = 3e-16
Identities = 60/193 (31%), Positives = 98/193 (50%), Gaps = 19/193 (9%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH---KKALAY 114
IL+ L+ PG +A++G SG GK+T++ +L R T +G+IL++G L +
Sbjct: 18 ILKGLSLTIPPGKTVALVGSSGCGKSTVV-SLLERFYDPT--SGEILLDGVDIRDLNLRW 74
Query: 115 GTS--AYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNT 172
S V+Q+ L T+ E + Y + + ++ KK I M L D +T
Sbjct: 75 LRSQIGLVSQEPVLFDG-TIAENIRYGKPDATDEEVEEAAKKANIHDFI--MSLPDGYDT 131
Query: 173 RI----RRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGI 228
+ +LSGGQK+R++I+ +L PK+L LDE TS LD+ + V + + +
Sbjct: 132 LVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMK---- 187
Query: 229 GRTIIASIHQPSS 241
GRT I H+ S+
Sbjct: 188 GRTTIVIAHRLST 200
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 3e-16
Identities = 59/228 (25%), Positives = 95/228 (41%), Gaps = 44/228 (19%)
Query: 59 LEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTS- 117
L L+ + G +L ++GP+G+GK+TLL +AG L +G I G + A+ +
Sbjct: 12 LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLL----PGSGSIQFAG-QPLEAWSAAE 66
Query: 118 -----AYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNT 172
AY++Q T + V+ L PD +GL D +
Sbjct: 67 LARHRAYLSQQQTPPFAM----PVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGR 122
Query: 173 RIRRLSGGQKRRVSISIEIL-----TRP--KLLFLDEPTSGLDSA---ASYYVMSRIAKL 222
+ +LSGG+ +RV ++ +L P +LL LDEP + LD A A ++S + +
Sbjct: 123 SVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQ 182
Query: 223 GQRDGIGRTIIASIHQPSSEVFQLFHNL------CLLSAGQTVYFGPA 264
G ++ S H L H L LL G+ + G
Sbjct: 183 ------GIAVVMSSH-------DLNHTLRHADRVWLLKQGKLLASGRR 217
|
Length = 248 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 4e-16
Identities = 55/232 (23%), Positives = 101/232 (43%), Gaps = 31/232 (13%)
Query: 69 GHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHK---------KALAYGTSAY 119
G + IMG SGSGK+T + L RL T G+I I+G + +
Sbjct: 19 GEIFVIMGLSGSGKSTTVRML-NRLIEPTA--GQIFIDGENIMKQSPVELREVRRKKIGM 75
Query: 120 VTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSG 179
V Q L +T+ + +L P+ ++KE+A ++ +GL++ + LSG
Sbjct: 76 VFQQFALFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRYPDELSG 132
Query: 180 GQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQP 239
G ++RV ++ + P +L +DE S LD + + KL + + +TI+ H
Sbjct: 133 GMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKL--QATLQKTIVFITHD- 189
Query: 240 SSEVFQLFHNLCLLSAGQTVYFGPATAANEFFAFNGFPCPTHQNPSDHFLKT 291
E ++ + ++ AG+ V G P +NP++ +++
Sbjct: 190 LDEAIRIGDRIVIMKAGEIVQVGT-------------PDEILRNPANEYVEE 228
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 5e-16
Identities = 65/251 (25%), Positives = 113/251 (45%), Gaps = 42/251 (16%)
Query: 12 NEALEMESSNKTANSLINVNEDDGVF-LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGH 70
EA +M++ +D+ +T ++L++ ++L +L +PG
Sbjct: 366 LEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDG-----QTLLSELNFEVRPGE 420
Query: 71 LLAIMGPSGSGKTTLLDALAG--RLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLIT 128
L I G SG+GKT+LL ALAG GS G+I + ++ Q +
Sbjct: 421 RLLITGESGAGKTSLLRALAGLWPWGS-----GRISMPADSA------LLFLPQR-PYLP 468
Query: 129 TLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRI-------RRLSGGQ 181
T++EA+ Y P+ P E V + ++GL D + R+ R LSGG+
Sbjct: 469 QGTLREALCY------PNAAPDFSDAELVAV-LHKVGLGD-LAERLDEEDRWDRVLSGGE 520
Query: 182 KRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSS 241
++R++ + +L +PK +FLDE TS LD + + + + T+I+ H+P+
Sbjct: 521 QQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLL----KEELPDATVISVGHRPT- 575
Query: 242 EVFQLFHNLCL 252
FH+ L
Sbjct: 576 --LWNFHSRQL 584
|
Length = 604 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 6e-16
Identities = 54/190 (28%), Positives = 90/190 (47%), Gaps = 15/190 (7%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH-----KKAL 112
+L+D+ KPG +AI+GP+G+GKTTL++ L + Q G+ILI+G +
Sbjct: 18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLL---MRFYDPQKGQILIDGIDIRDISRKS 74
Query: 113 AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIR--EMGLQDAM 170
V QD L + T+ E + + + ++ K+ A I G +
Sbjct: 75 LRSMIGVVLQDTFLFSG-TIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVL 133
Query: 171 NTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGR 230
LS G+++ ++I+ +L PK+L LDE TS +D+ + + KL + GR
Sbjct: 134 GENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMK----GR 189
Query: 231 TIIASIHQPS 240
T I H+ S
Sbjct: 190 TSIIIAHRLS 199
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 6e-16
Identities = 60/200 (30%), Positives = 99/200 (49%), Gaps = 36/200 (18%)
Query: 52 KKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH--- 108
+ IL+D++ +PG +AI+GPSGSGK+TLL L LG +T ++G + +G
Sbjct: 462 RPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLL---LGFETPESGSVFYDGQDLA 518
Query: 109 ---KKAL--AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVT--- 160
+A+ G V Q+ L++ ++ E + A L L + E A +
Sbjct: 519 GLDVQAVRRQLGV---VLQNGRLMSG-SIFENIAGGAPLTLDEAW------EAARMAGLA 568
Query: 161 --IREMGLQDAMNTRIRR----LSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYY 214
IR M + M+T I LSGGQ++R+ I+ ++ +P++L DE TS LD+
Sbjct: 569 EDIRAMPMG--MHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAI 626
Query: 215 VMSRIAKLGQRDGIGRTIIA 234
V + +L + R +IA
Sbjct: 627 VSESLERL----KVTRIVIA 642
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 6e-16
Identities = 51/168 (30%), Positives = 86/168 (51%), Gaps = 9/168 (5%)
Query: 48 VSNGKK--GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILI 105
V N K G L+D++ G L+A++GPSGSGKTTLL +AG D +G IL
Sbjct: 5 VRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD---SGTILF 61
Query: 106 NGH---KKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQ-LPDTMPKSDKKERAEVTI 161
G + +V Q L +TV + V + +++ + P+++ + + +
Sbjct: 62 GGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELL 121
Query: 162 REMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDS 209
+ + L + +LSGGQ++RV+++ + PK+L LDEP LD+
Sbjct: 122 KLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDA 169
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 7e-16
Identities = 55/182 (30%), Positives = 81/182 (44%), Gaps = 26/182 (14%)
Query: 41 KDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQT 100
KDL V + GKK IL+ + K G + AIMGP+GSGK+TL + G T
Sbjct: 7 KDLHVEV--EGKK---EILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGH--PKYEVT 59
Query: 101 -GKILING--------HKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKS 151
G+IL +G ++A A A+ Q I +T + + + +
Sbjct: 60 EGEILFDGEDILELSPDERARAGIFLAF--QYPVEIPGVTNSDFLRAAMNARRGARGILP 117
Query: 152 DKKERAEVTIREMGLQDAMNTRIRR-----LSGGQKRRVSISIEILTRPKLLFLDEPTSG 206
+ + + +GL + + R SGG+K+R I +L PKL LDEP SG
Sbjct: 118 EFIKELKEKAELLGLDEEF---LERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSG 174
Query: 207 LD 208
LD
Sbjct: 175 LD 176
|
Length = 251 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 8e-16
Identities = 52/182 (28%), Positives = 87/182 (47%), Gaps = 15/182 (8%)
Query: 55 SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH------ 108
+ +L +++ G ++AI+G SGSGK+TLL L G DT +G ++ NG
Sbjct: 21 QTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGL---DTPTSGDVIFNGQPMSKLS 77
Query: 109 ---KKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMG 165
K L ++ Q L+ T E V A L ++ RA + +G
Sbjct: 78 SAAKAELRNQKLGFIYQFHHLLPDFTALENV---AMPLLIGKKKPAEINSRALEMLAAVG 134
Query: 166 LQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQR 225
L+ N R LSGG+++RV+I+ ++ P+L+ DEPT LD+ + + + +L +
Sbjct: 135 LEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRL 194
Query: 226 DG 227
G
Sbjct: 195 QG 196
|
Length = 233 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 79.2 bits (196), Expect = 9e-16
Identities = 48/157 (30%), Positives = 70/157 (44%), Gaps = 28/157 (17%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTS 117
+L+DL+ G +AI+GP+G+GK+TLL LAG LG + G + G + Y
Sbjct: 337 LLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLS---GTV-KVGETVKIGY--- 389
Query: 118 AYVTQD-DTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIRE----MGL-QDAMN 171
Q D L TV E + + E +R G +
Sbjct: 390 --FDQHRDELDPDKTVLEEL-------------SEGFPDGDEQEVRAYLGRFGFTGEDQE 434
Query: 172 TRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208
+ LSGG+K R+ ++ +L P LL LDEPT+ LD
Sbjct: 435 KPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLD 471
|
Length = 530 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 9e-16
Identities = 59/205 (28%), Positives = 100/205 (48%), Gaps = 18/205 (8%)
Query: 67 KPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING-------HK--KALAYGTS 117
+ G + IMG SGSGK+TLL + RL T GK+LI+G K + L
Sbjct: 48 REGEIFVIMGLSGSGKSTLLRCI-NRLIEPTS--GKVLIDGQDIAAMSRKELRELRRKKI 104
Query: 118 AYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRL 177
+ V Q L+ TV E V + ++Q +P+++++ERA + +GL+ + L
Sbjct: 105 SMVFQSFALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYPDEL 161
Query: 178 SGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIH 237
SGG ++RV ++ + P +L +DE S LD + + +L Q + + +TI+ H
Sbjct: 162 SGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRL-QAE-LQKTIVFITH 219
Query: 238 QPSSEVFQLFHNLCLLSAGQTVYFG 262
E +L + ++ G+ V G
Sbjct: 220 DL-DEALRLGDRIAIMKDGRLVQVG 243
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 9e-16
Identities = 56/194 (28%), Positives = 96/194 (49%), Gaps = 24/194 (12%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKI-------LINGHKK 110
+L+ ++ G ++AI+G SGSGK+TL++ L G L T T ++ L
Sbjct: 23 VLKGISLDIYAGEMVAIVGASGSGKSTLMNIL-GCLDKPTSGTYRVAGQDVATLDADALA 81
Query: 111 ALAYGTSAYVTQDDTLITTLTVKE-----AVYYSAQLQLPDTMPKSDKKERAEVTIREMG 165
L ++ Q L++ LT + AVY + + RA+ ++ +G
Sbjct: 82 QLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGL--------ERKQRLLRAQELLQRLG 133
Query: 166 LQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQR 225
L+D + + +LSGGQ++RVSI+ ++ +++ DEPT LDS + VM+ + +L R
Sbjct: 134 LEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDR 193
Query: 226 DGIGRTIIASIHQP 239
G T+I H P
Sbjct: 194 ---GHTVIIVTHDP 204
|
Length = 648 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 1e-15
Identities = 47/177 (26%), Positives = 79/177 (44%), Gaps = 35/177 (19%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTS 117
+LE+++ PG + ++G +G+GK+TLL LAG L D+ G++ +
Sbjct: 18 LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDS---GEVTRPKGLRV------ 68
Query: 118 AYVTQDDTLITTLTVKEAV------YYSAQLQLPDT---MPKSDKKERAEVTIRE----- 163
Y++Q+ L TV + V +L + + D + AE+
Sbjct: 69 GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDG 128
Query: 164 -----------MGLQ-DAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208
+GL + + LSGG +RRV+++ +L P LL LDEPT+ LD
Sbjct: 129 WTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLD 185
|
Length = 530 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 1e-15
Identities = 56/220 (25%), Positives = 92/220 (41%), Gaps = 33/220 (15%)
Query: 32 EDDGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAG 91
G L ++++ T + L++ G +AI+G SGSGK+TLL LAG
Sbjct: 331 ATTGQALELRNVSFTYPGQ----QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAG 386
Query: 92 RLGSDTRQTGKILINGH-----KKALAYGTSAYVTQ-----DDTLITTLTVKEAVYYSAQ 141
Q G I +NG + T + +TQ TL L + +
Sbjct: 387 AWDP---QQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEE 443
Query: 142 LQLPDTMPKSDKKERAEVTIREMGLQDAMNTRI----RRLSGGQKRRVSISIEILTRPKL 197
L ++ + D +NT + RRLSGG++RR++++ +L L
Sbjct: 444 LW--------AALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPL 495
Query: 198 LFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIH 237
LDEPT GLD V++ + + + G+T++ H
Sbjct: 496 WLLDEPTEGLDPITERQVLALLFEHAE----GKTLLMVTH 531
|
Length = 573 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 2e-15
Identities = 55/213 (25%), Positives = 88/213 (41%), Gaps = 15/213 (7%)
Query: 61 DLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQT-GKILINGHK-KALAYGT-- 116
DL K G +LA++G SGSGK+ A+ G L QT G+IL++G L+
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRH 63
Query: 117 SAYVTQD--DTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDA---MN 171
A + Q+ T+ + + + + +GL D +
Sbjct: 64 IATIMQNPRTAFNPLFTMGNHAIETLRSL---GKLSKQARALILEALEAVGLPDPEEVLK 120
Query: 172 TRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRT 231
+LSGG +RV I++ +L P L DEPT+ LD V+ + +L Q G G
Sbjct: 121 KYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTG-- 178
Query: 232 IIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264
I I V ++ + ++ G+ V G
Sbjct: 179 -ILLITHDLGVVARIADEVAVMDDGRIVERGTV 210
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 74.5 bits (184), Expect = 2e-15
Identities = 56/216 (25%), Positives = 90/216 (41%), Gaps = 49/216 (22%)
Query: 67 KPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--------AYGTSA 118
+ G +AI+G GSGK+TLL LAG +G +L++G G
Sbjct: 28 RAGEKVAIIGRVGSGKSTLLKLLAGLYKP---TSGSVLLDGTDIRQLDPADLRRNIG--- 81
Query: 119 YVTQDDTL---------------ITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIRE 163
YV QD TL + A + + P ++ I E
Sbjct: 82 YVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGL-----DLQIGE 136
Query: 164 MGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLG 223
G R LSGGQ++ V+++ +L P +L LDEPTS +D + + R+ +L
Sbjct: 137 RG---------RGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQL- 186
Query: 224 QRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTV 259
+T+I H+PS + L + ++ +G+ V
Sbjct: 187 ---LGDKTLIIITHRPS--LLDLVDRIIVMDSGRIV 217
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.8 bits (184), Expect = 2e-15
Identities = 61/186 (32%), Positives = 90/186 (48%), Gaps = 19/186 (10%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING-----HKKAL 112
IL+D++ + G + I+GPSG+GK+TL+ L RL T G ILI+G
Sbjct: 18 ILKDISVKFEGGAIYTIVGPSGAGKSTLIK-LINRLIDPTE--GSILIDGVDIKTIDVID 74
Query: 113 AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNT 172
V Q L TVK+ + Y L K +K E + +GL T
Sbjct: 75 LRRKIGMVFQQPHLFEG-TVKDNIEYGPML-------KGEKNVDVEYYLSIVGLNKEYAT 126
Query: 173 R-IRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRT 231
R ++ LSGG+ +RVSI+ + P++L LDEPTS LD ++ + I KL + + T
Sbjct: 127 RDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNL--T 184
Query: 232 IIASIH 237
+I H
Sbjct: 185 VIWITH 190
|
Length = 241 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 3e-15
Identities = 53/193 (27%), Positives = 92/193 (47%), Gaps = 18/193 (9%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA 113
G+ IL DL+ G + A++GP+G GK+TLL A L T Q+G + + K ++
Sbjct: 13 GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLL---TPQSGTVFLGD--KPIS 67
Query: 114 YGTS-------AYVTQDDTLITTLTVKEAVYY--SAQLQLPDTMPKSDKKERAEVTIREM 164
+S A + Q +TV+E V Y S L L + D R + +
Sbjct: 68 MLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDN-ARVNQAMEQT 126
Query: 165 GLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQ 224
+ + R+ LSGGQ++R +++ + ++ LDEPT+ LD +M + +L
Sbjct: 127 RINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNT 186
Query: 225 RDGIGRTIIASIH 237
+ G+T++ +H
Sbjct: 187 Q---GKTVVTVLH 196
|
Length = 255 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 3e-15
Identities = 52/192 (27%), Positives = 83/192 (43%), Gaps = 10/192 (5%)
Query: 66 AKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQ--D 123
A G LL ++GP+G+GKTTLL A+ LG G + + G + YV Q +
Sbjct: 3 ADKGELLGLLGPNGAGKTTLLRAI---LGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHE 59
Query: 124 DTLITTLTVKEAVYYS-AQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQK 182
++V V P +R +GL + + + LSGGQ+
Sbjct: 60 FAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQR 119
Query: 183 RRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSE 242
+RV ++ + TRP +L LDEP +GLD + +L G G I+ + H +
Sbjct: 120 QRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELA---GAGTAILMTTHDLAQA 176
Query: 243 VFQLFHNLCLLS 254
+ + LL+
Sbjct: 177 M-ATCDRVVLLN 187
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 6e-15
Identities = 45/159 (28%), Positives = 73/159 (45%), Gaps = 18/159 (11%)
Query: 67 KPGHLLAIMGPSGSGKTTLLDAL--AGRLGSDTRQTGKILINGHKKALAYGTSAY----- 119
+ A++GPSG GK+TLL +L L R GK+L +G +
Sbjct: 25 PKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDG-QDIYDKKIDVVELRRR 83
Query: 120 ---VTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIR- 175
V Q +++ + + Y +L K + E E ++++ L D + R+
Sbjct: 84 VGMVFQKPNPFP-MSIYDNIAYGPRLH--GIKDKKELDEIVEESLKKAALWDEVKDRLHD 140
Query: 176 ---RLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAA 211
LSGGQ++R+ I+ + P++L LDEPTS LD A
Sbjct: 141 SALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIA 179
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 75.6 bits (186), Expect = 7e-15
Identities = 52/209 (24%), Positives = 92/209 (44%), Gaps = 18/209 (8%)
Query: 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLG 94
+ DL+V G +++L+ + + G L+ ++GP+G+GKTTLL A+ G L
Sbjct: 1 MPMIDVSDLSVEF------GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT 54
Query: 95 SDTRQTGKILINGHKKALAYGTS-----AYVTQDDTLITTLTVKEAVYYSAQLQLPDTMP 149
G +L+ G + A V QD +L V++ V
Sbjct: 55 PT---AGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDT 111
Query: 150 KSDKKERA-EVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208
++ A E + G+ + + LSGG+++RV ++ + +L LDEPT+ LD
Sbjct: 112 WTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLD 171
Query: 209 SAASYYVMSRIAKLGQRDGIGRTIIASIH 237
+ + +L G+T +A+IH
Sbjct: 172 INHQVRTLELVRRLVDD---GKTAVAAIH 197
|
Length = 402 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.0 bits (188), Expect = 7e-15
Identities = 49/175 (28%), Positives = 87/175 (49%), Gaps = 15/175 (8%)
Query: 67 KPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING-------HKKALAYGTSAY 119
+PG + A++G +G+GK+TL+ L+G D+ G+ILI+G + ALA G +
Sbjct: 32 RPGEVHALLGENGAGKSTLMKILSGVYPPDS---GEILIDGKPVAFSSPRDALAAGIAT- 87
Query: 120 VTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDK-KERAEVTIREMGLQDAMNTRIRRLS 178
V Q+ +L+ L+V E ++ + + + RA + +GL +T + LS
Sbjct: 88 VHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLS 147
Query: 179 GGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTII 233
Q++ V I+ + ++L LDEPT+ L + + I +L + G II
Sbjct: 148 IAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQ---GVAII 199
|
Length = 500 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 7e-15
Identities = 57/188 (30%), Positives = 98/188 (52%), Gaps = 20/188 (10%)
Query: 59 LEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTS- 117
L+D++ G +AI+G +GSGK+TL L G L + G I + G L+ T
Sbjct: 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEA---GTITVGG--MVLSEETVW 77
Query: 118 ------AYVTQ--DDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDA 169
V Q D+ + TV++ V + + +P+ + ER + +R++G++D
Sbjct: 78 DVRRQVGMVFQNPDNQFVGA-TVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDF 133
Query: 170 MNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIG 229
+N RLSGGQK+RV+I+ + +P ++ LDE TS LD V+ + +L ++ GI
Sbjct: 134 LNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGI- 192
Query: 230 RTIIASIH 237
T+++ H
Sbjct: 193 -TVLSITH 199
|
Length = 279 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 7e-15
Identities = 49/165 (29%), Positives = 81/165 (49%), Gaps = 13/165 (7%)
Query: 50 NGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING-- 107
K L+ ++ + G ++ +GP+G+GKTT L L+G L +G++ + G
Sbjct: 28 KRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLL---QPTSGEVRVAGLV 84
Query: 108 ---HKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQL-QLPDTMPKSDKKERAEVTIRE 163
+K Q L L V ++ Y A + LP K E +E+
Sbjct: 85 PWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSEL---- 140
Query: 164 MGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208
+ L++ ++T +R+LS GQ+ R I+ +L P++LFLDEPT GLD
Sbjct: 141 LDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLD 185
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 8e-15
Identities = 52/178 (29%), Positives = 99/178 (55%), Gaps = 9/178 (5%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH---KK 110
GS++++++L K G ++ ++GPSG GKTT+L +AG L T G+I I+G +
Sbjct: 17 GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAG-LEKPT--EGQIFIDGEDVTHR 73
Query: 111 ALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAM 170
++ V Q L +++ E V Y ++ +PK ++K+R + + + L
Sbjct: 74 SIQQRDICMVFQSYALFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFE 130
Query: 171 NTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGI 228
+ + ++SGGQ++RV+++ ++ +PK+L DEP S LD+ + +I +L Q+ I
Sbjct: 131 DRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNI 188
|
Length = 351 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 9e-15
Identities = 54/203 (26%), Positives = 94/203 (46%), Gaps = 26/203 (12%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA 113
G +L+ ++ A G +++I+G SGSGK+T L + + G I +NG + L
Sbjct: 17 GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFL---EKPSAGSIRVNGEEIRLK 73
Query: 114 YGTS------------------AYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKE 155
V Q L + +TV E V A + + + K++ E
Sbjct: 74 RDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENV-IEAPVHVLG-VSKAEAIE 131
Query: 156 RAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYV 215
RAE + ++G+ + + LSGGQ++RV+I+ + P+++ DEPTS LD V
Sbjct: 132 RAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEV 191
Query: 216 MSRIAKLGQRDGIGRTIIASIHQ 238
+ + L + GRT++ H+
Sbjct: 192 LKVMQDLAEE---GRTMVVVTHE 211
|
Length = 256 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 1e-14
Identities = 57/190 (30%), Positives = 98/190 (51%), Gaps = 22/190 (11%)
Query: 59 LEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSA 118
L+ + K G + AI+G +G+GK+TL L G L +G+IL +G K + Y
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKP---SSGRILFDG--KPIDYSRKG 76
Query: 119 ---------YVTQD-DTLITTLTVKEAVYYSA-QLQLPDTMPKSDKKERAEVTIREMGLQ 167
V QD D + + +V + V + A L+LP + + ++R + ++ G++
Sbjct: 77 LMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLP----EDEVRKRVDNALKRTGIE 132
Query: 168 DAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDG 227
+ LS GQK+RV+I+ ++ PK+L LDEPT+GLD +M + ++ +
Sbjct: 133 HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQK--E 190
Query: 228 IGRTIIASIH 237
+G TII + H
Sbjct: 191 LGLTIIIATH 200
|
Length = 283 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.4 bits (180), Expect = 1e-14
Identities = 74/259 (28%), Positives = 118/259 (45%), Gaps = 46/259 (17%)
Query: 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAG--RLGS 95
+ D+TVT NG + L D + G + A++G +GSGK+TL AL G RL S
Sbjct: 7 IVVNDVTVTW-RNGH----TALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLAS 61
Query: 96 DTRQTGKILINGH--KKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTM----- 148
GKI I G ++AL AYV Q E V +S + + D +
Sbjct: 62 -----GKISILGQPTRQALQKNLVAYVPQ----------SEEVDWSFPVLVEDVVMMGRY 106
Query: 149 --------PKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFL 200
K ++ + + + + + +I LSGGQK+RV ++ I + +++ L
Sbjct: 107 GHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILL 166
Query: 201 DEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260
DEP +G+D ++S + +L RD G+T++ S H S F + ++ G +
Sbjct: 167 DEPFTGVDVKTEARIISLLREL--RDE-GKTMLVSTHNLGS--VTEFCDYTVMVKGTVLA 221
Query: 261 FGPA----TAANEFFAFNG 275
GP TA N AF+G
Sbjct: 222 SGPTETTFTAENLELAFSG 240
|
Length = 272 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 1e-14
Identities = 44/157 (28%), Positives = 84/157 (53%), Gaps = 11/157 (7%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112
++ED++ G ++ ++GP+G+GKTT + G + R G I+I+ +L
Sbjct: 18 VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIV---PRDAGNIIIDDEDISLLPLHA 74
Query: 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMN 171
A Y+ Q+ ++ L+V + + A LQ+ D + +++RA + E ++ +
Sbjct: 75 RARRGIGYLPQEASIFRRLSVYDNLM--AVLQIRDDLSAEQREDRANELMEEFHIEHLRD 132
Query: 172 TRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208
+ + LSGG++RRV I+ + PK + LDEP +G+D
Sbjct: 133 SMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVD 169
|
Length = 241 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 1e-14
Identities = 46/145 (31%), Positives = 71/145 (48%), Gaps = 15/145 (10%)
Query: 68 PGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTS--AYVTQDDT 125
G L + G +G+GKTTLL LAG L ++ G+I I+G + AY+
Sbjct: 36 AGEALLVQGDNGAGKTTLLRVLAGLLHVES---GQIQIDGKTATRGDRSRFMAYLGHLPG 92
Query: 126 LITTLTVKEAVYYSAQLQ--LPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKR 183
L L+ E +++ L MP S + I +GL +T +R+LS GQK+
Sbjct: 93 LKADLSTLENLHFLCGLHGRRAKQMPGS------ALAI--VGLAGYEDTLVRQLSAGQKK 144
Query: 184 RVSISIEILTRPKLLFLDEPTSGLD 208
R++++ L+ L LDEP + LD
Sbjct: 145 RLALARLWLSPAPLWLLDEPYANLD 169
|
Length = 214 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 1e-14
Identities = 58/189 (30%), Positives = 95/189 (50%), Gaps = 20/189 (10%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHK-------- 109
L D++ + K G L+I+G +GSGK+T + + G L +++ G+I+I+G
Sbjct: 22 TLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAES---GQIIIDGDLLTEENVWD 78
Query: 110 KALAYGTSAYVTQD-DTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD 168
G V Q+ D TV++ V + + + +P + KER + +G+QD
Sbjct: 79 IRHKIGM---VFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQD 132
Query: 169 AMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGI 228
RLSGGQK+RV+I+ + RPK++ LDE TS LD ++ I + RD
Sbjct: 133 FKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGI--RDDY 190
Query: 229 GRTIIASIH 237
T+I+ H
Sbjct: 191 QMTVISITH 199
|
Length = 279 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 1e-14
Identities = 46/174 (26%), Positives = 82/174 (47%), Gaps = 21/174 (12%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLG---SDTRQTGKILINGHKK 110
G L+D+ + A++GPSG GK+TLL L R+ R G++L++G K
Sbjct: 18 GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCL-NRMNDLIPGARVEGEVLLDG-KN 75
Query: 111 ALAYGTSAY--------VTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIR 162
V Q +++ + V Y +L + + E E +++
Sbjct: 76 IYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLH---GIKDKELDEIVESSLK 131
Query: 163 EMGLQDAMNTRIRR----LSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAAS 212
+ L D + R+ + LSGGQ++R+ I+ + +P++L +DEPTS LD ++
Sbjct: 132 KAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPIST 185
|
Length = 253 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 2e-14
Identities = 53/188 (28%), Positives = 86/188 (45%), Gaps = 23/188 (12%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING----HK 109
G ++L+ L G +A++GPSGSGK+T+L L + + G+I + G H
Sbjct: 11 GILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRIL---MTLEPIDEGQIQVEGEQLYHM 67
Query: 110 KALA--------------YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKE 155
V Q L TV + V + L L M +++ ++
Sbjct: 68 PGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVL--GMARAEAEK 125
Query: 156 RAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYV 215
RA + +GL D + +LSGGQ++RV+I+ + RPK++ DE TS LD V
Sbjct: 126 RAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEV 185
Query: 216 MSRIAKLG 223
++ I +L
Sbjct: 186 LNVIRRLA 193
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 2e-14
Identities = 41/174 (23%), Positives = 80/174 (45%), Gaps = 18/174 (10%)
Query: 67 KPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTS-------AY 119
+ G ++ I G +G+G++ L++A++G +G+IL+NG AY
Sbjct: 282 RAGEIVGIAGVAGNGQSELVEAISGLR---KPASGRILLNGKDVLGRLSPRERRRLGLAY 338
Query: 120 VTQD---DTLITTLTVKEAV---YYSAQLQLPDTMPKSDK-KERAEVTIREMGLQ-DAMN 171
V +D L+ L++ E + + + ++ A I E ++ + +
Sbjct: 339 VPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPD 398
Query: 172 TRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQR 225
R LSGG ++++ ++ E+ RP LL +PT GLD A ++ R+ +L
Sbjct: 399 APARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDA 452
|
Length = 501 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 2e-14
Identities = 48/149 (32%), Positives = 82/149 (55%), Gaps = 11/149 (7%)
Query: 66 AKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVT---Q 122
+ G +AI+GPSG+GK+TLL+ +AG L + G + +NG + V+ Q
Sbjct: 22 VERGERVAILGPSGAGKSTLLNLIAGFLTPAS---GSLTLNGQDHTTTPPSRRPVSMLFQ 78
Query: 123 DDTLITTLTVKEAVYYSAQLQL-PDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQ 181
++ L + LTV + + L L P + ++E+ R+MG++D + +LSGGQ
Sbjct: 79 ENNLFSHLTVAQNI----GLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQ 134
Query: 182 KRRVSISIEILTRPKLLFLDEPTSGLDSA 210
++RV+++ ++ +L LDEP S LD A
Sbjct: 135 RQRVALARCLVREQPILLLDEPFSALDPA 163
|
Length = 232 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 71.4 bits (176), Expect = 2e-14
Identities = 56/182 (30%), Positives = 77/182 (42%), Gaps = 57/182 (31%)
Query: 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDT 97
L KDL V++ GK+ IL+ + K G + A+MGP+GSGK+TL + G
Sbjct: 1 LEIKDLHVSV--GGKE----ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGH--PKY 52
Query: 98 RQT-GKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQL------QLPDTMPK 150
T G+IL G +D IT L +E A+L Q P +P
Sbjct: 53 EVTEGEILFKG--------------ED---ITDLPPEE----RARLGIFLAFQYPPEIP- 90
Query: 151 SDKKERAEVTIREMGLQDAMNTRIRRL----SGGQKRRVSISIEILTRPKLLFLDEPTSG 206
V + +R + SGG+K+R I +L P L LDEP SG
Sbjct: 91 -------GVKNADF---------LRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSG 134
Query: 207 LD 208
LD
Sbjct: 135 LD 136
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.8 bits (178), Expect = 2e-14
Identities = 68/228 (29%), Positives = 110/228 (48%), Gaps = 24/228 (10%)
Query: 57 SILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRL----GSDTRQTGKILINGHK--- 109
+IL+D+T + IMGPSGSGK+TLL L RL S + GK+L G
Sbjct: 24 AILKDITIKIPNNSIFGIMGPSGSGKSTLLKVL-NRLIEIYDSKIKVDGKVLYFGKDIFQ 82
Query: 110 -KALAYGTS-AYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGL- 166
A+ V Q L++ + + Y L+ K + K+ E +R++GL
Sbjct: 83 IDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYP--LKSHGIKEKREIKKIVEECLRKVGLW 140
Query: 167 ---QDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLG 223
D +N+ +LSGGQ++R++I+ + +PK+L +DEPTS +D S + I +L
Sbjct: 141 KEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELK 200
Query: 224 QRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANEFF 271
I+ H P +V ++ + L G+ V +G ++NE F
Sbjct: 201 NE----IAIVIVSHNP-QQVARVADYVAFLYNGELVEWG---SSNEIF 240
|
Length = 257 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 3e-14
Identities = 50/175 (28%), Positives = 78/175 (44%), Gaps = 27/175 (15%)
Query: 59 LEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSA 118
L DL+ PG L ++GP+G+GKTTL+D + G+ Q G++L +G
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRP---QEGEVLFDGDTDLTKLPEHR 77
Query: 119 YVT-------QDDTLITTLTVKEAVYYSAQLQLPDTMPKS-----------DKKERAEVT 160
Q T+ LTV+E L+L KS +++ R +
Sbjct: 78 IARAGIGRKFQKPTVFENLTVRE------NLELALNRDKSVFASLFARLRAEERRRIDEL 131
Query: 161 IREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYV 215
+ +GL D + LS GQK+ + I + + PKLL LDEP +G+ A +
Sbjct: 132 LATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKT 186
|
Length = 249 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 3e-14
Identities = 44/146 (30%), Positives = 76/146 (52%), Gaps = 15/146 (10%)
Query: 69 GHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAY------VTQ 122
G + A++G SG GK+TLL LAG + G+I+++G + Y + Q
Sbjct: 45 GEIFALLGASGCGKSTLLRMLAG---FEQPTAGQIMLDGVDLSH---VPPYQRPINMMFQ 98
Query: 123 DDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQK 182
L +TV++ + + + D +PK++ R + + +Q+ + +LSGGQ+
Sbjct: 99 SYALFPHMTVEQNIAFGLK---QDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQR 155
Query: 183 RRVSISIEILTRPKLLFLDEPTSGLD 208
+RV+++ + RPKLL LDEP LD
Sbjct: 156 QRVALARSLAKRPKLLLLDEPMGALD 181
|
Length = 377 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 3e-14
Identities = 54/170 (31%), Positives = 79/170 (46%), Gaps = 34/170 (20%)
Query: 59 LEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQT-GKILINGHKKALAYGTS 117
L DL+ Y PG L I+GP+G+GKTT++D + G+ TR G +L G G
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGK----TRPDEGSVLFGGTDLT---GLP 70
Query: 118 AYVT---------QDDTLITTLTVKEAVYYSAQLQLPDTMPKS-----------DKKERA 157
+ Q T+ LTV E L+L KS ++K+R
Sbjct: 71 EHQIARAGIGRKFQKPTVFENLTVFE------NLELALPRDKSVFASLFFRLSAEEKDRI 124
Query: 158 EVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGL 207
E + +GL D + LS GQK+ + I + ++ PKLL LDEP +G+
Sbjct: 125 EEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM 174
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 3e-14
Identities = 50/157 (31%), Positives = 78/157 (49%), Gaps = 21/157 (13%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA 113
G +L D++ KPG +L ++GP+G+GK+TL+ + G + D G I L
Sbjct: 15 GQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDE---GVIK---RNGKLR 68
Query: 114 YGTSAYVTQDDTLITT--LTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMN 171
G YV Q L TT LTV + + D +P + + + + M
Sbjct: 69 IG---YVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHL------IDAPM- 118
Query: 172 TRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208
++LSGG+ +RV ++ +L RP+LL LDEPT G+D
Sbjct: 119 ---QKLSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
|
Length = 251 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 3e-14
Identities = 51/170 (30%), Positives = 80/170 (47%), Gaps = 16/170 (9%)
Query: 51 GKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH-- 108
G KG + DL PG +L I+G SGSGK+TLL LAGRL D I+ +G
Sbjct: 15 GGKGCRDVSFDL----YPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAEL 70
Query: 109 ---------KKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEV 159
++ L +V Q+ + V +L + + A+
Sbjct: 71 ELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQD 130
Query: 160 TIREMGL-QDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208
+ E+ + ++ R SGG ++R+ I+ ++TRP+L+F+DEPT GLD
Sbjct: 131 WLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLD 180
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.1 bits (183), Expect = 4e-14
Identities = 53/182 (29%), Positives = 85/182 (46%), Gaps = 24/182 (13%)
Query: 67 KPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHK-------KALAYGTSAY 119
+ G +L I G G+G+T L AL G +G+IL++G A+ G AY
Sbjct: 283 RAGEILGIAGLVGAGRTELARALFGA---RPASSGEILLDGKPVRIRSPRDAIKAGI-AY 338
Query: 120 VTQD---DTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVT--IREMGLQDA-MNTR 173
V +D + L+ +++ E + ++ + +KERA IR + ++
Sbjct: 339 VPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQP 398
Query: 174 IRRLSGG--QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRT 231
I LSGG QK V ++ + T PK+L LDEPT G+D A + I +L G+
Sbjct: 399 IGTLSGGNQQK--VVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAE---GKA 453
Query: 232 II 233
I+
Sbjct: 454 IL 455
|
Length = 500 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 4e-14
Identities = 60/212 (28%), Positives = 97/212 (45%), Gaps = 63/212 (29%)
Query: 45 VTIVS-NGKKGSSSILEDLTGYAKPG-HLLAIMGPSGSGKTTLLDALAG--RLGSDTRQT 100
+++ + +G+ +L+DL+ KPG LL I GPSG+GK++L ALAG GS
Sbjct: 6 LSLATPDGR----VLLKDLSFEIKPGDRLL-ITGPSGTGKSSLFRALAGLWPWGS----- 55
Query: 101 GKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVT 160
G+I + + L ++ Q + T++E + Y P D
Sbjct: 56 GRIGMPEGEDLL------FLPQR-PYLPLGTLREQLIY----------PWDD-------- 90
Query: 161 IREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIA 220
LSGG+++R++ + +L +PK +FLDE TS LD R+
Sbjct: 91 ---------------VLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEE----SEDRLY 131
Query: 221 KLGQRDGIGRTIIASIHQPSSEVFQLFHNLCL 252
+L + GI T+I+ H+PS FH+ L
Sbjct: 132 QLLKELGI--TVISVGHRPSLWK---FHDRVL 158
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 6e-14
Identities = 62/223 (27%), Positives = 102/223 (45%), Gaps = 39/223 (17%)
Query: 55 SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAY 114
S +L +L KPG + I+GPSGSGK+TL L RL T Q G++L++G A+A
Sbjct: 469 SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTL-TKLLQRL--YTPQHGQVLVDGVDLAIAD 525
Query: 115 GTS-----AYVTQDDTLITTLTVK-----------EAVYYSAQLQLPDTMPKSDKKERAE 158
V Q++ L + E V ++A+L A
Sbjct: 526 PAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLA------------GAH 573
Query: 159 VTIREM--GLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVM 216
I E+ G + + LSGGQ++R++I+ ++ P++L DE TS LD + +M
Sbjct: 574 DFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIM 633
Query: 217 SRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTV 259
+ ++ + GRT+I H+ S+ + + +L GQ
Sbjct: 634 RNMREICR----GRTVIIIAHRLST--VRACDRIIVLEKGQIA 670
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 7e-14
Identities = 52/172 (30%), Positives = 91/172 (52%), Gaps = 17/172 (9%)
Query: 67 KPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING--------HKKA-LAYGTS 117
G ++ ++GP+G+GKTT + G + D+ GKIL++ HK+A L G
Sbjct: 28 NSGEIVGLLGPNGAGKTTTFYMIVGLVRPDS---GKILLDDEDITKLPMHKRARLGIG-- 82
Query: 118 AYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRL 177
Y+ Q+ ++ LTV++ + +++ D K+++KE + + E + +++ L
Sbjct: 83 -YLPQEASIFRKLTVEDNIMAVLEIREKDL-KKAERKEELDALLEEFHITHLRDSKAYSL 140
Query: 178 SGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIG 229
SGG++RRV I+ + PK + LDEP +G+D A + I L R GIG
Sbjct: 141 SGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDR-GIG 191
|
Length = 243 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 7e-14
Identities = 49/165 (29%), Positives = 85/165 (51%), Gaps = 18/165 (10%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLL---DALAGRLGSDTRQTGKILINGHK- 109
G + +L ++ G ++ I+GPSGSGK+TLL + L + +G ++++G K
Sbjct: 12 GPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKL------EEITSGDLIVDGLKV 65
Query: 110 ------KALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIRE 163
+ L + V Q L LT E V + L++ K + +++A + +
Sbjct: 66 NDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGP-LRV-RGASKEEAEKQARELLAK 123
Query: 164 MGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208
+GL + + LSGGQ++RV+I+ + +PKL+ DEPTS LD
Sbjct: 124 VGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALD 168
|
Length = 240 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 8e-14
Identities = 56/196 (28%), Positives = 83/196 (42%), Gaps = 28/196 (14%)
Query: 67 KPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTL 126
G +AI+G +GSGKTT ++ L L DT I + K + +
Sbjct: 31 NQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQ 90
Query: 127 ITTL----TVKE------AVYYSAQLQL------------PDTM--PKSDKKERAEVTIR 162
T +KE V+ A+ QL P +M K + K+RA I
Sbjct: 91 KTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIE 150
Query: 163 EMGL-QDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAK 221
+GL + + LSGGQKRRV+++ + P L DEPT+GLD ++
Sbjct: 151 LVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDN 210
Query: 222 LGQRDGIGRTIIASIH 237
L ++ G+TII H
Sbjct: 211 LNKQ---GKTIILVTH 223
|
Length = 305 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 70.9 bits (174), Expect = 8e-14
Identities = 51/166 (30%), Positives = 74/166 (44%), Gaps = 17/166 (10%)
Query: 53 KGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL 112
+G+ I ++++ G + AIMGPSG GKTTLL + G++ D G+IL +G
Sbjct: 17 RGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD---HGEILFDGENIPA 73
Query: 113 AYGTSAYVT--------QDDTLITTLTVKEAVYY--SAQLQLPDTMPKSDKKERAEVTIR 162
+ Y Q L T + V + V Y QLP + S + E
Sbjct: 74 MSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEA--- 130
Query: 163 EMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208
+GL+ A LSGG RR +++ I P L+ DEP G D
Sbjct: 131 -VGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQD 175
|
Length = 269 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 1e-13
Identities = 53/201 (26%), Positives = 93/201 (46%), Gaps = 47/201 (23%)
Query: 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDT 97
L+ +++ + ++ +L++L+ K G +A++G SGSGK+TLL L G L
Sbjct: 1 LSINNVSFSYPEQEQQ----VLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKP-- 54
Query: 98 RQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERA 157
Q G+I ++G S +LI+ L + Y L DT
Sbjct: 55 -QQGEITLDGVP------VSDLEKALSSLISVLN--QRPY------LFDT---------- 89
Query: 158 EVTIRE-MGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVM 216
T+R +G RR SGG+++R++++ +L ++ LDEPT GLD ++
Sbjct: 90 --TLRNNLG---------RRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLL 138
Query: 217 SRIAKLGQRDGIGRTIIASIH 237
S I ++ + +T+I H
Sbjct: 139 SLIFEVLK----DKTLIWITH 155
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 1e-13
Identities = 46/177 (25%), Positives = 77/177 (43%), Gaps = 15/177 (8%)
Query: 52 KKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKA 111
G + IL +++ + G +AI GPSG GK+TLL +A + + G +L G +
Sbjct: 12 LAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTS---GTLLFEG-EDV 67
Query: 112 LAYGTSA------YVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMG 165
A Y Q L TV++ + + Q++ + A + +
Sbjct: 68 STLKPEAYRQQVSYCAQTPALFGD-TVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSI 126
Query: 166 LQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKL 222
L I LSGG+K+R+++ + PK+L LDE TS LD + + I +
Sbjct: 127 LT----KNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRY 179
|
Length = 223 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 69.0 bits (170), Expect = 2e-13
Identities = 60/218 (27%), Positives = 96/218 (44%), Gaps = 55/218 (25%)
Query: 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDT 97
TW G++ +S L+D+ G L+AI+GP GSGK++LL AL G L
Sbjct: 8 FTWDS--------GEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGEL---E 56
Query: 98 RQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKE--------------AVYYSAQLQ 143
+ +G + + G+ AYV+Q+ + T++E V + L+
Sbjct: 57 KLSGSVSVP--------GSIAYVSQEPWIQNG-TIRENILFGKPFDEERYEKVIKACALE 107
Query: 144 LPD--TMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLD 201
PD +P D E I E G +N LSGGQK+R+S++ + + + LD
Sbjct: 108 -PDLEILPDGDLTE-----IGEKG----IN-----LSGGQKQRISLARAVYSDADIYLLD 152
Query: 202 EPTSGLDSAASYYVMSR-IAKLGQRDGIGRTIIASIHQ 238
+P S +D+ ++ I L +T I HQ
Sbjct: 153 DPLSAVDAHVGRHIFENCILGLLLN---NKTRILVTHQ 187
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 2e-13
Identities = 55/194 (28%), Positives = 94/194 (48%), Gaps = 18/194 (9%)
Query: 53 KGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH---K 109
GS L ++ A +A++GP+G+GK+TL G L +G +LI G K
Sbjct: 14 SGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGIL---KPTSGSVLIRGEPITK 70
Query: 110 KAL--AYGTSAYVTQD-DTLITTLTVKEAVYYSAQLQLPDTMPKSDK--KERAEVTIREM 164
+ + V Q+ D I + TV++ + + P + ++ R + +
Sbjct: 71 ENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFG-----PINLGLDEETVAHRVSSALHML 125
Query: 165 GLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQ 224
GL++ + LSGG+K+RV+I+ I P++L LDEPT+GLD ++ + L +
Sbjct: 126 GLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPE 185
Query: 225 RDGIGRTIIASIHQ 238
G+ T+I S HQ
Sbjct: 186 TYGM--TVIFSTHQ 197
|
Length = 277 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 2e-13
Identities = 63/203 (31%), Positives = 102/203 (50%), Gaps = 31/203 (15%)
Query: 48 VSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING 107
VS S +ED++ AKPG +AI+GP+G+GK+TL+ L R Q+G+ILI+G
Sbjct: 340 VSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLI-NLLQR--VFDPQSGRILIDG 396
Query: 108 ------HKKAL--AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKS--DKKERA 157
+ +L V QD L ++++ + ++ PD + ERA
Sbjct: 397 TDIRTVTRASLRRNIAV---VFQDAGLFNR-SIEDNI----RVGRPDATDEEMRAAAERA 448
Query: 158 E----VTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASY 213
+ + + G + R R+LSGG+++R++I+ +L P +L LDE TS LD
Sbjct: 449 QAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEA 508
Query: 214 YVMSRIAKLGQRDGIGRT--IIA 234
V + + +L + GRT IIA
Sbjct: 509 KVKAALDELMK----GRTTFIIA 527
|
Length = 588 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.7 bits (170), Expect = 2e-13
Identities = 51/197 (25%), Positives = 95/197 (48%), Gaps = 19/197 (9%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDAL--AGRLGSDTRQTGKILINGH--- 108
G + ++D++ + AI+GPSG GK+T+L ++ L R TGKIL++
Sbjct: 15 GKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIY 74
Query: 109 -KKALAYGTS---AYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREM 164
+ V Q +++ + V A +L + +S+ E E +++ +
Sbjct: 75 DRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVI--AGYKLNGRVNRSEADEIVESSLKRV 132
Query: 165 GLQDAMNTRIR----RLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIA 220
L D + R++ LSGGQ++R+ I+ I +P+++ +DEP S LD ++ + I
Sbjct: 133 ALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIE 192
Query: 221 KLGQRDGIGRTIIASIH 237
+L ++ TII H
Sbjct: 193 ELKEK----YTIIIVTH 205
|
Length = 252 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 2e-13
Identities = 58/185 (31%), Positives = 87/185 (47%), Gaps = 17/185 (9%)
Query: 59 LEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING-----HKKALA 113
L+ L +PG +A++GPSG+GK+TL L L Q+G+IL++G A
Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLL---LRFYDPQSGRILLDGVDLRQLDPAEL 412
Query: 114 YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREM--GLQDAMN 171
A V QD L +V E + Y + + + + A I + G +
Sbjct: 413 RARMALVPQDPVLFAA-SVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLG 471
Query: 172 TRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRT 231
R LSGGQ++R++I+ IL +L LDE TS LD+ + V + L + GRT
Sbjct: 472 ERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMK----GRT 527
Query: 232 --IIA 234
IIA
Sbjct: 528 TLIIA 532
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 3e-13
Identities = 57/193 (29%), Positives = 96/193 (49%), Gaps = 23/193 (11%)
Query: 57 SILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING------HKK 110
++L L+ G + ++G +GSGK+TLL L GR + G+IL++ K
Sbjct: 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKML-GRHQPPS--EGEILLDAQPLESWSSK 81
Query: 111 ALAYGTSAYVTQDDTLITTLTVKEAV------YYSAQLQLPDTMPKSDKKERAEVTIREM 164
A A AY+ Q +TV+E V ++ A + + +E+ E I +
Sbjct: 82 AFARKV-AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRF-----GAADREKVEEAISLV 135
Query: 165 GLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQ 224
GL+ + + LSGG+++R I++ + + L LDEPTS LD A V++ + +L Q
Sbjct: 136 GLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQ 195
Query: 225 RDGIGRTIIASIH 237
G+ T+IA +H
Sbjct: 196 ERGL--TVIAVLH 206
|
Length = 265 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 67.5 bits (166), Expect = 3e-13
Identities = 42/178 (23%), Positives = 73/178 (41%), Gaps = 54/178 (30%)
Query: 67 KPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH-------KKALAYGTSAY 119
+ G ++ I G G+G+T L +AL G +G+I ++G + A+ G AY
Sbjct: 24 RAGEIVGIAGLVGNGQTELAEALFG---LRPPASGEITLDGKPVTRRSPRDAIRAG-IAY 79
Query: 120 VTQD---DTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRR 176
V +D + L+ L+V E N +
Sbjct: 80 VPEDRKREGLVLDLSVAE------------------------------------NIALSS 103
Query: 177 -LSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTII 233
LSGG +++V ++ + P++L LDEPT G+D A + I +L G+ ++
Sbjct: 104 LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADA---GKAVL 158
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 3e-13
Identities = 60/212 (28%), Positives = 103/212 (48%), Gaps = 23/212 (10%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQT-GKILINGHKKAL 112
G + + +++ + ++GP+G+GK+TLL + G L R T G+I+ +GH
Sbjct: 11 GKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGIL----RPTSGEIIFDGHP--- 63
Query: 113 AYGTSAYVTQDDTLITTLTVKEAVY--YSAQ--LQLPDTMPKSDKKERAEVTIREMGLQD 168
+ +D I +L +Y +A+ L++ T+ EV + + L +
Sbjct: 64 ------WTRKDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEV-LNIVDLTN 116
Query: 169 AMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGI 228
+ ++ S G K+R+ I+I +L PKLL LDEPT+GLD + I ++
Sbjct: 117 TGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQ--- 173
Query: 229 GRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260
G T+I S H SEV QL ++ ++S G Y
Sbjct: 174 GITVILSSH-ILSEVQQLADHIGIISEGVLGY 204
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 4e-13
Identities = 53/188 (28%), Positives = 86/188 (45%), Gaps = 11/188 (5%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDAL-------AGRLGSDTRQTGKILIN 106
G+ L D+T G L ++GPSG+GK++LL L +G L
Sbjct: 13 GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTP 72
Query: 107 GHKKALAYGTS-AYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMG 165
K + V Q L LTV+E + + L + K RAE ++ +
Sbjct: 73 SDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVL--GLSKDQALARAEKLLKRLR 130
Query: 166 LQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQR 225
L+ + LSGGQ++RV+I+ ++ P++L DEPT+ LD + ++S I +L
Sbjct: 131 LKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKEL-AE 189
Query: 226 DGIGRTII 233
GI + I+
Sbjct: 190 TGITQVIV 197
|
Length = 242 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 4e-13
Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 15/171 (8%)
Query: 73 AIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING---HKKALAY--GTSAYVTQD-DTL 126
A++GP+G+GK+TLL L G Q G++ + G + + + V QD D
Sbjct: 35 ALLGPNGAGKSTLLLHLNG---IYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQ 91
Query: 127 ITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVS 186
+ + TV + V + + K + + R E ++ + + D + LS GQK+RV+
Sbjct: 92 VFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVA 148
Query: 187 ISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIH 237
I+ + P ++ LDEP + LD +M + +L + G+T+I + H
Sbjct: 149 IAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQ---GKTVIVATH 196
|
Length = 274 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 4e-13
Identities = 60/191 (31%), Positives = 90/191 (47%), Gaps = 36/191 (18%)
Query: 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDAL--AGRLGS 95
L DL+V N KK +S+ D P + A++GPSGSGK+TLL ++ L
Sbjct: 6 LQVSDLSVYY--NKKKALNSVSLDF----YPNEITALIGPSGSGKSTLLRSINRMNDLNP 59
Query: 96 DTRQTGKILINGHKKALAYGTSAYVTQDDTLIT--------------TLTVKEAVYYSAQ 141
+ TG I+ NGH + Y + DT+ +++ E V Y
Sbjct: 60 EVTITGSIVYNGH--------NIYSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYG-- 109
Query: 142 LQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRR----LSGGQKRRVSISIEILTRPKL 197
L+L K E E +++ + D + R+ LSGGQ++RV I+ + T PK+
Sbjct: 110 LRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKI 169
Query: 198 LFLDEPTSGLD 208
+ LDEPTS LD
Sbjct: 170 ILLDEPTSALD 180
|
Length = 252 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.5 bits (167), Expect = 4e-13
Identities = 53/162 (32%), Positives = 81/162 (50%), Gaps = 21/162 (12%)
Query: 67 KPGHLLAIMGPSGSGKTTLLDAL--AGRLGSDTRQTGKILINGHKKALAYGTS------- 117
+ G + A++GPSG GKTT L A+ L R TG+IL++G YG
Sbjct: 28 QRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQD---IYGPRVDPVAMR 84
Query: 118 ---AYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRI 174
V Q T++V + V A L+L + E AE ++R L D + R+
Sbjct: 85 RRVGMVFQKPNPFPTMSVFDNVV--AGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRL 142
Query: 175 RR----LSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAAS 212
+ LSGGQ++R+ I+ + P++L +DEPTS LD A++
Sbjct: 143 KTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPAST 184
|
Length = 252 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 6e-13
Identities = 50/157 (31%), Positives = 82/157 (52%), Gaps = 18/157 (11%)
Query: 69 GHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH-------KKALAYGTSAYVT 121
G +L + G G+G+T L+ L G L R +G + ++GH + LA G Y++
Sbjct: 278 GEILGVSGLMGAGRTELMKVLYGAL---PRTSGYVTLDGHEVVTRSPQDGLANGI-VYIS 333
Query: 122 QD---DTLITTLTVKEAVYYSAQLQLPDTMPKSD-KKERAEVT--IREMGLQD-AMNTRI 174
+D D L+ ++VKE + +A E+ V+ IR ++ +M I
Sbjct: 334 EDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAI 393
Query: 175 RRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAA 211
LSGG +++V+I+ ++TRPK+L LDEPT G+D A
Sbjct: 394 GLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGA 430
|
Length = 501 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 6e-13
Identities = 57/207 (27%), Positives = 104/207 (50%), Gaps = 21/207 (10%)
Query: 41 KDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQT 100
K+++ SN + L+D+ K G L I+G +GSGK+T+ + L
Sbjct: 8 KNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALL---IPSE 64
Query: 101 GKILINGHKKALAYGT------SAYVTQ--DDTLITTLTVKEAVYYSAQLQLPDTM--PK 150
GK+ ++G + + V Q D+ ++ T+ V+E V + P+ + P
Sbjct: 65 GKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATI-VEEDVAFG-----PENLGIPP 118
Query: 151 SDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSA 210
+ +ER + +++++G+ + LSGGQK+RV+I+ + RP+ + DEPT+ LD +
Sbjct: 119 EEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPS 178
Query: 211 ASYYVMSRIAKLGQRDGIGRTIIASIH 237
V++ I +L ++ GI TII H
Sbjct: 179 GRREVVNTIKELNKKYGI--TIILITH 203
|
Length = 280 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 6e-13
Identities = 64/239 (26%), Positives = 94/239 (39%), Gaps = 64/239 (26%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAG---------RLGS------DTRQTGK 102
IL+ ++ + G L I+GPSGSGK+TL L G RL D Q G+
Sbjct: 351 ILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGR 410
Query: 103 ILINGHKKALAYGTSAYVTQDDTLITTLTVKE------------AVYYSAQLQLPDTMPK 150
+ Y+ QD L T+ E V +A+L
Sbjct: 411 HI-------------GYLPQDVELFDG-TIAENIARFGEEADPEKVIEAARL-------- 448
Query: 151 SDKKERAEVTIREMGLQDAMNTRI----RRLSGGQKRRVSISIEILTRPKLLFLDEPTSG 206
A V + L +TRI LSGGQ++R++++ + P L+ LDEP S
Sbjct: 449 ------AGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSN 502
Query: 207 LDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPAT 265
LDS + + I R G T++ H+PS + +L G+ FGP
Sbjct: 503 LDSEGEAALAAAILAAKAR---GGTVVVIAHRPS--ALASVDKILVLQDGRIAAFGPRE 556
|
Length = 580 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 6e-13
Identities = 54/187 (28%), Positives = 76/187 (40%), Gaps = 50/187 (26%)
Query: 51 GKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKK 110
KG + DL PG +L I+G SGSGKTTLL ++GRL D
Sbjct: 18 PGKGCRDVSFDL----YPGEVLGIVGESGSGKTTLLKCISGRLTPDA------------- 60
Query: 111 ALAYGTSAYVTQDDTLITTLTVKEA------------VYYSAQLQL-PDTMPKSDKKERA 157
GT Y +D T+ EA V+ + + L + ER
Sbjct: 61 ----GTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERL 116
Query: 158 EVT-------IREMGL---------QDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLD 201
IR D ++ R SGG ++R+ I+ ++TRP+L+F+D
Sbjct: 117 MAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMD 176
Query: 202 EPTSGLD 208
EPT GLD
Sbjct: 177 EPTGGLD 183
|
Length = 258 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 6e-13
Identities = 52/200 (26%), Positives = 92/200 (46%), Gaps = 29/200 (14%)
Query: 57 SILEDLTGYAKPGHLLAIMGPSGSGKTTLLDAL-------AGRLGSDTRQTGKIL----I 105
+L++++ G +A+ GPSG+GK+TLL +L +GR+ R G +
Sbjct: 22 PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILV--RHEGAWVDLAQA 79
Query: 106 NGHKK-ALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREM 164
+ + + T YV+Q +I ++ E V A+ L +P+ + RA + +
Sbjct: 80 SPREVLEVRRKTIGYVSQFLRVIPRVSALEVV---AEPLLERGVPREAARARARELLARL 136
Query: 165 GLQD-----AMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRI 219
+ + T SGG+++RV+I+ + +L LDEPT+ LD+A V+ I
Sbjct: 137 NIPERLWHLPPAT----FSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELI 192
Query: 220 AKLGQRDGIGRTIIASIHQP 239
A+ R G +I H
Sbjct: 193 AEAKAR---GAALIGIFHDE 209
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 7e-13
Identities = 49/168 (29%), Positives = 90/168 (53%), Gaps = 13/168 (7%)
Query: 69 GHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLI- 127
G LAI+G +GSGK+TL LAG + +G+ILIN H L +G ++ ++ +I
Sbjct: 39 GQTLAIIGENGSGKSTLAKMLAGMIEP---TSGEILINDHP--LHFGDYSFRSKRIRMIF 93
Query: 128 ----TTLTVKEAV--YYSAQLQLPDTMPKSDKKERAEVTIREMGL-QDAMNTRIRRLSGG 180
T+L + + L+L + ++++ T+R +GL D N L+ G
Sbjct: 94 QDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPG 153
Query: 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGI 228
QK+RV+++ ++ RPK++ DE + LD + +++ + +L ++ GI
Sbjct: 154 QKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGI 201
|
Length = 267 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 7e-13
Identities = 57/214 (26%), Positives = 94/214 (43%), Gaps = 37/214 (17%)
Query: 67 KPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING------HKKALAYGTSAYV 120
+PG +AI+G GSGK+TLL L G G +L++G L YV
Sbjct: 489 RPGEKVAIIGRIGSGKSTLLKLLLGLYQP---TEGSVLLDGVDIRQIDPADLRRNIG-YV 544
Query: 121 TQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNT-------- 172
QD L T+++ + A P +D +E G+ + +
Sbjct: 545 PQDPRLFYG-TLRDNIALGA--------PYADDEEILRA-AELAGVTEFVRRHPDGLDMQ 594
Query: 173 ---RIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIG 229
R R LSGGQ++ V+++ +L P +L LDEPTS +D+ + R+ + G
Sbjct: 595 IGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA----G 650
Query: 230 RTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263
+T++ H+ S + L + ++ G+ V GP
Sbjct: 651 KTLVLVTHRTS--LLDLVDRIIVMDNGRIVADGP 682
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 70.4 bits (172), Expect = 8e-13
Identities = 56/177 (31%), Positives = 81/177 (45%), Gaps = 22/177 (12%)
Query: 70 HLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYG----TSAYVTQDDT 125
+ A +G +G+GKTT L L G L +G +L+ G + Q +
Sbjct: 957 QITAFLGHNGAGKTTTLSILTGLLPP---TSGTVLVGGKDIETNLDAVRQSLGMCPQHNI 1013
Query: 126 LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREM----GLQDAMNTRIRRLSGGQ 181
L LTV E + + AQL K E A++ + M GL N + LSGG
Sbjct: 1014 LFHHLTVAEHILFYAQL-------KGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGM 1066
Query: 182 KRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQ 238
+R++S++I + K++ LDEPTSG+D Y I L + GRTII S H
Sbjct: 1067 QRKLSVAIAFVGDAKVVVLDEPTSGVDP----YSRRSIWDLLLKYRSGRTIIMSTHH 1119
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 9e-13
Identities = 52/191 (27%), Positives = 96/191 (50%), Gaps = 17/191 (8%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHK-------K 110
++D++ + G +L I G G+G+T L+ L G R G+I I+G +
Sbjct: 277 RVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFG--AYPGRWEGEIFIDGKPVKIRNPQQ 334
Query: 111 ALAYGTSAYVTQD---DTLITTLTVKEAVYYSA--QLQLPDTMPKSDKKERAEVTIREMG 165
A+A G A V +D D ++ + V + + +A + + + + + +I+ +
Sbjct: 335 AIAQGI-AMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLK 393
Query: 166 LQDA-MNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQ 224
++ A I RLSGG +++ ++ +L PK+L LDEPT G+D A Y + I +L Q
Sbjct: 394 VKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQ 453
Query: 225 RDGIGRTIIAS 235
+ G+ +I+S
Sbjct: 454 Q-GVAIIVISS 463
|
Length = 506 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 9e-13
Identities = 58/201 (28%), Positives = 94/201 (46%), Gaps = 36/201 (17%)
Query: 59 LEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGT-- 116
L+ ++ +PG +A++G SGSGK+TL++ + D+ G+IL++GH LA T
Sbjct: 348 LDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDS---GQILLDGH--DLADYTLA 402
Query: 117 -----SAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMN 171
A V+QD L T+ + Y Q E + QD ++
Sbjct: 403 SLRRQVALVSQDVVLFND-TIANNIAYGRTEQADR--------AEIERALAAAYAQDFVD 453
Query: 172 -------TRI----RRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIA 220
T I LSGGQ++R++I+ +L +L LDE TS LD+ + V + +
Sbjct: 454 KLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALE 513
Query: 221 KLGQRDGIGRTIIASIHQPSS 241
+L Q GRT + H+ S+
Sbjct: 514 RLMQ----GRTTLVIAHRLST 530
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 1e-12
Identities = 57/199 (28%), Positives = 97/199 (48%), Gaps = 35/199 (17%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING---------- 107
+L+ LT PG ++A++GPSGSGK+T+ AL L T G++L++G
Sbjct: 496 VLKGLTFTLHPGEVVALVGPSGSGKSTVA-ALLQNLYQPT--GGQVLLDGVPLVQYDHHY 552
Query: 108 -HKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGL 166
H++ A V Q+ L + +V+E + Y + + + K A I M
Sbjct: 553 LHRQV------ALVGQEPVLFSG-SVRENIAYGLTDTPDEEIMAAAKAANAHDFI--MEF 603
Query: 167 QDAMNTRI----RRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVM-SRIAK 221
+ +T + +LSGGQK+R++I+ ++ +P++L LDE TS LD+ + SR
Sbjct: 604 PNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSRA 663
Query: 222 LGQRDGIGRTIIASIHQPS 240
RT++ H+ S
Sbjct: 664 -------SRTVLLIAHRLS 675
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 1e-12
Identities = 57/190 (30%), Positives = 80/190 (42%), Gaps = 33/190 (17%)
Query: 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDT 97
L KDL V++ K+ IL+ + K G + AIMGP+GSGK+TL +AG
Sbjct: 1 LKIKDLHVSV--EDKE----ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGH--PSY 52
Query: 98 RQT-GKILINGH--------KKA-----LAYGTS---AYVTQDDTLITTLTVKEAVYYSA 140
T G IL G ++A LA+ V+ + L + L + +
Sbjct: 53 EVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEE 112
Query: 141 QLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRR--LSGGQKRRVSISIEILTRPKLL 198
L L D + K +G+ + R SGG+K+R I L PKL
Sbjct: 113 PLDLLDFLKLLKAKLAL------LGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLA 166
Query: 199 FLDEPTSGLD 208
LDE SGLD
Sbjct: 167 ILDEIDSGLD 176
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 1e-12
Identities = 46/190 (24%), Positives = 85/190 (44%), Gaps = 16/190 (8%)
Query: 50 NGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHK 109
G K + +L +++ + G + ++G SG GK+TL L LG + G + G
Sbjct: 18 FGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLL---LGLEKPAQGTVSFRGQD 74
Query: 110 KALAYGTSAYVTQDDTLIT----------TLTVKEAVYYSAQLQLPDTMPKSDKKERAEV 159
+ D + +TV++ + L+ ++ +S++K R
Sbjct: 75 LYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQII--GEPLRHLTSLDESEQKARIAE 132
Query: 160 TIREMGLQDA-MNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSR 218
+ +GL+ + R+LSGGQ +R++I+ + +PKL+ LDE S LD ++
Sbjct: 133 LLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILEL 192
Query: 219 IAKLGQRDGI 228
+ KL Q G
Sbjct: 193 LRKLQQAFGT 202
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 1e-12
Identities = 39/143 (27%), Positives = 61/143 (42%), Gaps = 39/143 (27%)
Query: 67 KPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTL 126
K G L ++G SG GK+TL + G + G+IL G
Sbjct: 37 KEGETLGLVGESGCGKSTLGRLILGLEEPTS---GEILFEGKD----------------- 76
Query: 127 ITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGL-QDAMNTRIRRLSGGQKRRV 185
IT L+ K +++ER + ++GL ++ + LSGGQ++R+
Sbjct: 77 ITKLS------------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRI 118
Query: 186 SISIEILTRPKLLFLDEPTSGLD 208
I+ + PKL+ DEP S LD
Sbjct: 119 GIARALALNPKLIVADEPVSALD 141
|
Length = 268 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 2e-12
Identities = 42/148 (28%), Positives = 71/148 (47%), Gaps = 11/148 (7%)
Query: 67 KPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHK-------KALAYGTSAY 119
K G + A++G +G+GK+TL+ L G D+ G+I ++G + A+ G
Sbjct: 28 KKGEIHALLGENGAGKSTLMKILFGLYQPDS---GEIRVDGKEVRIKSPRDAIRLGI-GM 83
Query: 120 VTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSG 179
V Q L+ TLTV E + + + + + R + GL + ++ LS
Sbjct: 84 VHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSV 143
Query: 180 GQKRRVSISIEILTRPKLLFLDEPTSGL 207
G+++RV I + +LL LDEPT+ L
Sbjct: 144 GEQQRVEILKALYRGARLLILDEPTAVL 171
|
Length = 501 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 2e-12
Identities = 49/168 (29%), Positives = 85/168 (50%), Gaps = 23/168 (13%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING------ 107
G + +L D++ G ++A++GPSGSGKTTLL +AG L T +G I +G
Sbjct: 13 GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAG-LEHQT--SGHIRFHGTDVSRL 69
Query: 108 HKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ 167
H + G +V Q L +TV + + + + +P+ ++ A + + L
Sbjct: 70 HARDRKVG---FVFQHYALFRHMTVFDNIAFGLTV-----LPRRERPNAAAIKAKVTQLL 121
Query: 168 DAM------NTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDS 209
+ + + +LSGGQK+RV+++ + P++L LDEP LD+
Sbjct: 122 EMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDA 169
|
Length = 353 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 2e-12
Identities = 59/206 (28%), Positives = 99/206 (48%), Gaps = 36/206 (17%)
Query: 73 AIMGPSGSGKTTLLDALAGRLGSDTR-QTGKILINGHKKALAYGTSA------------Y 119
AI G SG+GKT+L++A++G TR Q G+I++NG + + Y
Sbjct: 28 AIFGRSGAGKTSLINAISGL----TRPQKGRIVLNGR---VLFDAEKGICLPPEKRRIGY 80
Query: 120 VTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSG 179
V QD L V+ + Y M KS + ++ + +G++ ++ LSG
Sbjct: 81 VFQDARLFPHYKVRGNLRYG--------MAKSMVAQFDKI-VALLGIEPLLDRYPGSLSG 131
Query: 180 GQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQP 239
G+K+RV+I +LT P+LL +DEP + LD ++ + +L + I I+ H
Sbjct: 132 GEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINI--PILYVSH-- 187
Query: 240 SS--EVFQLFHNLCLLSAGQTVYFGP 263
S E+ +L + +L G+ FGP
Sbjct: 188 -SLDEILRLADRVVVLEQGKVKAFGP 212
|
Length = 352 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 64.4 bits (158), Expect = 2e-12
Identities = 39/168 (23%), Positives = 62/168 (36%), Gaps = 69/168 (41%)
Query: 41 KDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQT 100
++L+ T G +L+D++ PG + ++G +G+GK+TLL +AG L D
Sbjct: 4 ENLSKTY------GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPD---E 54
Query: 101 GKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVT 160
G + K + Y QL
Sbjct: 55 GIVTWGSTVK-------------------------IGYFEQL------------------ 71
Query: 161 IREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208
SGG+K R++++ +L P LL LDEPT+ LD
Sbjct: 72 -----------------SGGEKMRLALAKLLLENPNLLLLDEPTNHLD 102
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 2e-12
Identities = 60/221 (27%), Positives = 97/221 (43%), Gaps = 42/221 (19%)
Query: 56 SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYG 115
S+ L L+G + G +L ++GP+G+GK+TLL +AG +G I G + A+
Sbjct: 12 STRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----SGSIQFAG-QPLEAWS 66
Query: 116 TS------AYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEV---TIREMGL 166
+ AY++Q T + V++ L PD K R E+ + L
Sbjct: 67 ATELARHRAYLSQQQTPPFAM----PVWHYLTLHQPD-------KTRTELLNDVAGALAL 115
Query: 167 QDAMNTRIRRLSGGQKRRVSISIEIL-----TRP--KLLFLDEPTSGLDSA---ASYYVM 216
D + +LSGG+ +RV ++ +L P +LL LDEP + LD A A ++
Sbjct: 116 DDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLL 175
Query: 217 SRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQ 257
S + G I+ S H + + H LL G+
Sbjct: 176 SALC------QQGLAIVMSSHD-LNHTLRHAHRAWLLKRGK 209
|
Length = 248 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 2e-12
Identities = 60/229 (26%), Positives = 109/229 (47%), Gaps = 22/229 (9%)
Query: 56 SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH-----KK 110
S+IL D++ K I+G SGSGK+TL L G + ++G+IL+NG +
Sbjct: 487 SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQA---RSGEILLNGFSLKDIDR 543
Query: 111 ALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKS--DKKE-RAEVTIREMGLQ 167
Y+ Q+ I + ++ E + A+ + + + E + ++ +G Q
Sbjct: 544 HTLRQFINYLPQE-PYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQ 602
Query: 168 DAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDG 227
++ +SGGQK+R++++ +LT K+L LDE TS LD+ +++ + L
Sbjct: 603 TELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQD--- 659
Query: 228 IGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANEFFAFNGF 276
+TII H+ S V + + +L G+ + G + +E NGF
Sbjct: 660 --KTIIFVAHRLS--VAKQSDKIIVLDHGKIIEQG---SHDELLDRNGF 701
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 2e-12
Identities = 47/170 (27%), Positives = 92/170 (54%), Gaps = 13/170 (7%)
Query: 67 KPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTL 126
+ G LAI+G +GSGK+TL LAG + +G++LI+ H L +G +Y +Q +
Sbjct: 37 REGQTLAIIGENGSGKSTLAKMLAGMIEP---TSGELLIDDHP--LHFGDYSYRSQRIRM 91
Query: 127 I-----TTLTVKEAV--YYSAQLQLPDTMPKSDKKERAEVTIREMGL-QDAMNTRIRRLS 178
I T+L ++ + L+L + ++++ T+R++GL D + L+
Sbjct: 92 IFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLA 151
Query: 179 GGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGI 228
GQK+R+ ++ ++ RPK++ DE + LD + +++ + +L ++ GI
Sbjct: 152 PGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGI 201
|
Length = 267 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 3e-12
Identities = 58/210 (27%), Positives = 92/210 (43%), Gaps = 45/210 (21%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLG---SDTRQTGKILINGHKK 110
GS IL D+ + A +GPSG GK+T L R+ + + G++ I+G
Sbjct: 16 GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCF-NRMNDFVPNCKVKGELDIDGID- 73
Query: 111 ALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKS----------------DKK 154
V DT + L K + + Q P+ PKS +KK
Sbjct: 74 ---------VYSVDTNVVLLRAKVGMVF----QKPNPFPKSIYDNVAYGPKLHGLAKNKK 120
Query: 155 ---ERAEVTIREMGLQDAMNTRIR----RLSGGQKRRVSISIEILTRPKLLFLDEPTSGL 207
E E ++ +GL + + R++ LSGGQ++R+ I+ I +P +L +DEP S L
Sbjct: 121 KLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSAL 180
Query: 208 DSAASYYVMSRIAKLGQRDGIGRTIIASIH 237
D A+ + + I +L + TII H
Sbjct: 181 DPVATNVIENLIQELKKN----FTIIVVTH 206
|
Length = 251 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 3e-12
Identities = 64/227 (28%), Positives = 97/227 (42%), Gaps = 51/227 (22%)
Query: 67 KPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTL 126
+ G L ++G SGSGK+TL AL + S G+I +G QD
Sbjct: 311 RRGQTLGLVGESGSGKSTLGLALLRLIPSQ----GEIRFDG--------------QD--- 349
Query: 127 ITTLTVKEAVYYSAQLQ---------LPDTM--------------PKSDKKERAEVTI-- 161
I L+ KE ++Q L M PK ER + I
Sbjct: 350 IDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEA 409
Query: 162 -REMGL-QDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRI 219
E+GL N SGGQ++R++I+ ++ +P+L+ LDEPTS LD + V+ +
Sbjct: 410 LEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLL 469
Query: 220 AKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATA 266
L Q+ G+ I+ H + V L H + ++ G+ V GP A
Sbjct: 470 RDLQQKHGLSYLFIS--HDLAV-VRALCHRVIVMRDGKIVEQGPTEA 513
|
Length = 534 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 3e-12
Identities = 58/209 (27%), Positives = 94/209 (44%), Gaps = 27/209 (12%)
Query: 74 IMGPSGSGKTTLLDALAGRLGSD--TRQTGKILINGH---KKALAYGTSAYVTQDDTLIT 128
I+G SGSGK+TL+ G + S T Q G I I + + S + L
Sbjct: 57 IIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRR 116
Query: 129 TLTVKEAVYYSAQLQL------PDTM--------PKSDKKERAEVTIREMGLQDAMNTRI 174
+++ V+ + QL D M KS+ K+ A+ + +MGL D+ R
Sbjct: 117 RVSM---VFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERS 173
Query: 175 R-RLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTII 233
LSGGQKRRV+I+ + +P++L DEPT+GLD + +M I +T+
Sbjct: 174 PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKAN---NKTVF 230
Query: 234 ASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262
H V ++ + ++ G+ + G
Sbjct: 231 VITHT-MEHVLEVADEVIVMDKGKILKTG 258
|
Length = 320 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 3e-12
Identities = 65/218 (29%), Positives = 99/218 (45%), Gaps = 18/218 (8%)
Query: 69 GHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHK---KALAYGTSAYVTQDDT 125
G + +GPSG GK+TLL +AG L T +G + I + A V Q
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAG-LEDIT--SGDLFIGEKRMNDVPPAERGVGMVFQSYA 85
Query: 126 LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRV 185
L L+V E + + +L K + +R + L ++ + + LSGGQ++RV
Sbjct: 86 LYPHLSVAENMSFGLKLAGAK---KEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRV 142
Query: 186 SISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQ 245
+I ++ P + LDEP S LD+A + I++L +R +GRT+I H E
Sbjct: 143 AIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKR--LGRTMIYVTHD-QVEAMT 199
Query: 246 LFHNLCLLSAGQTVYFGPATA-----ANEFFA-FNGFP 277
L + +L AG+ G AN F A F G P
Sbjct: 200 LADKIVVLDAGRVAQVGKPLELYHYPANRFVAGFIGSP 237
|
Length = 369 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 68.5 bits (167), Expect = 4e-12
Identities = 51/186 (27%), Positives = 89/186 (47%), Gaps = 11/186 (5%)
Query: 55 SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRL---GSDTRQTGKILINGHKKA 111
SS ++ L +PG ++G +G+GKTT L G D GK ++
Sbjct: 1951 SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDV 2010
Query: 112 LAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMN 171
+ Y Q D + LT +E +Y A+L+ +P + ++ A +I+ +GL +
Sbjct: 2011 --HQNMGYCPQFDAIDDLLTGREHLYLYARLR---GVPAEEIEKVANWSIQSLGLSLYAD 2065
Query: 172 TRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRT 231
SGG KR++S +I ++ P L+ LDEPT+G+D A + + I + + GR
Sbjct: 2066 RLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIRE---GRA 2122
Query: 232 IIASIH 237
++ + H
Sbjct: 2123 VVLTSH 2128
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.8 bits (160), Expect = 5e-12
Identities = 55/204 (26%), Positives = 95/204 (46%), Gaps = 27/204 (13%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA 113
G +L+ ++ A G +++I+G SGSGK+T L + + G I++NG L
Sbjct: 16 GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFL---EKPSEGSIVVNGQTINLV 72
Query: 114 YGTSA------------------YVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKE 155
V Q L + +TV E V A +Q+ + K + +E
Sbjct: 73 RDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVM-EAPIQVLG-LSKQEARE 130
Query: 156 RAEVTIREMGLQDAMNTRI-RRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYY 214
RA + ++G+ + + LSGGQ++RVSI+ + P++L DEPTS LD
Sbjct: 131 RAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGE 190
Query: 215 VMSRIAKLGQRDGIGRTIIASIHQ 238
V+ + +L + G+T++ H+
Sbjct: 191 VLRIMQQLAEE---GKTMVVVTHE 211
|
Length = 257 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 5e-12
Identities = 58/235 (24%), Positives = 96/235 (40%), Gaps = 26/235 (11%)
Query: 13 EALEMESSNKTANSLINVNEDDGVFLTWKDLTVTIVSNG---KKGSSSILEDLTGYAKPG 69
E LE K +E D L + + S G + +L +L KPG
Sbjct: 352 EKLEGPIKFKNVTK-TFASELDIKGLP-NEFQDILESFGVRQRVIERYVLRNLNLEIKPG 409
Query: 70 HLLAIMGPSGSGKTTLLDALAGR---LGSDTRQTGKILINGHKKALAYGTSAYVTQDDTL 126
++A++G SG+GKTTLL + G G + + + K ++ + +
Sbjct: 410 DVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPG---EYEPE 466
Query: 127 ITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTR--IRRLSGGQKRR 184
+T+ E + K+ A + GL DA+ R LS GQK R
Sbjct: 467 FGEVTILEHLR-----------SKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKER 515
Query: 185 VSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQP 239
++ + RP +L +DE + LD + V +I++L + GI T+I H+P
Sbjct: 516 AKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGI--TLIVVTHRP 568
|
Length = 593 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (163), Expect = 5e-12
Identities = 62/249 (24%), Positives = 114/249 (45%), Gaps = 31/249 (12%)
Query: 52 KKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING---- 107
K G S ++D + + G + IMG SGSGK+T++ L RL TR G++LI+G
Sbjct: 37 KTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMV-RLLNRLIEPTR--GQVLIDGVDIA 93
Query: 108 -----HKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIR 162
+ + A V Q L+ +TV + + +L + +++E+A +R
Sbjct: 94 KISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELA---GINAEERREKALDALR 150
Query: 163 EMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKL 222
++GL++ ++ LSGG ++RV ++ + P +L +DE S LD + + KL
Sbjct: 151 QVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKL 210
Query: 223 GQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANEFFAFNGFPCPTHQ 282
+ RTI+ H E ++ + ++ G+ V G P
Sbjct: 211 QAKH--QRTIVFISHD-LDEAMRIGDRIAIMQNGEVVQVGT-------------PDEILN 254
Query: 283 NPSDHFLKT 291
NP++ +++T
Sbjct: 255 NPANDYVRT 263
|
Length = 400 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 6e-12
Identities = 56/189 (29%), Positives = 90/189 (47%), Gaps = 23/189 (12%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDT---RQTGKILINGHKK 110
GS +ED+ +P + A +GPSG GK+T+L L R+ R G++L++G
Sbjct: 15 GSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTL-NRMHEVIPGARVEGEVLLDGED- 72
Query: 111 ALAYG----------TSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVT 160
YG T V Q T+++++ V A L+L K D E E +
Sbjct: 73 --LYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNV--VAGLKLNGVRNKKDLDELVEKS 128
Query: 161 IREMGLQDAMNTRIRR----LSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVM 216
+R L + + R+ + LSGGQ++R+ I+ I P +L +DEP S LD ++ +
Sbjct: 129 LRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIE 188
Query: 217 SRIAKLGQR 225
I +L Q
Sbjct: 189 DLINELKQD 197
|
Length = 258 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 6e-12
Identities = 47/153 (30%), Positives = 78/153 (50%), Gaps = 19/153 (12%)
Query: 69 GHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILI---NGHK----------KALAYG 115
G + +MG SGSGK+TLL A+ G L +R G +L+ +G + L
Sbjct: 50 GEICVLMGLSGSGKSTLLRAVNG-LNPVSR--GSVLVKDGDGSVDVANCDAATLRRLRTH 106
Query: 116 TSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIR 175
+ V Q L+ TV+E V + ++Q MPK+++++R + + +GL + +
Sbjct: 107 RVSMVFQQFALLPWRTVEENVAFGLEMQ---GMPKAERRKRVDEQLELVGLAQWADRKPG 163
Query: 176 RLSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208
LSGG ++RV ++ T +L +DEP S LD
Sbjct: 164 ELSGGMQQRVGLARAFATEAPILLMDEPFSALD 196
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 6e-12
Identities = 47/224 (20%), Positives = 83/224 (37%), Gaps = 28/224 (12%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-AYGT 116
L+D++ G + I+G +G+GK+TLL +AG +GK+ + G L G
Sbjct: 42 ALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT---SGKVKVTGKVAPLIELGA 98
Query: 117 SAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRR 176
LT +E +Y + + + + E+ + I L D ++ ++
Sbjct: 99 G--------FDPELTGRENIYLRGLIL---GLTRKEIDEKVDEIIEFAELGDFIDQPVKT 147
Query: 177 LSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSA----ASYYVMSRIAKLGQRDGIGRTI 232
S G R++ S+ P +L LDE + D+A + + K +TI
Sbjct: 148 YSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEK-------NKTI 200
Query: 233 IASIHQPSSEVFQLFHNLCLLSAGQTVYFG-PATAANEFFAFNG 275
+ H + Q L GQ G P +
Sbjct: 201 VLVSHDL-GAIKQYCDRAIWLEHGQIRMEGSPEEVIPAYEEDLA 243
|
Length = 249 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 7e-12
Identities = 60/190 (31%), Positives = 89/190 (46%), Gaps = 14/190 (7%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA 113
G ++L L + G +A++G SG GK+TLL LAG +T G++L A A
Sbjct: 23 GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGL---ETPSAGELLAGTAPLAEA 79
Query: 114 YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTR 173
+ + QD L+ V + V L L K ++ A + +GL D N
Sbjct: 80 REDTRLMFQDARLLPWKKVIDNV----GLGL-----KGQWRDAALQALAAVGLADRANEW 130
Query: 174 IRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTII 233
LSGGQK+RV+++ ++ RP LL LDEP LD+ + I L Q+ G T++
Sbjct: 131 PAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGF--TVL 188
Query: 234 ASIHQPSSEV 243
H S V
Sbjct: 189 LVTHDVSEAV 198
|
Length = 257 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 8e-12
Identities = 58/198 (29%), Positives = 97/198 (48%), Gaps = 21/198 (10%)
Query: 59 LEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH-------KKA 111
L+D++ + G + A+MG +G+GK+TLL L+G + G ILI+G A
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSG---NYQPDAGSILIDGQEMRFASTTAA 76
Query: 112 LAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKE-RAEVTIR--EMGLQD 168
LA G A + Q+ L+ +TV E +Y QLP +++ E + +G+
Sbjct: 77 LAAGV-AIIYQELHLVPEMTVAENLYLG---QLPHKGGIVNRRLLNYEAREQLEHLGVDI 132
Query: 169 AMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGI 228
+T ++ LS GQ++ V I+ + +++ DEPTS L + + I +L R
Sbjct: 133 DPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIREL--RAE- 189
Query: 229 GRTIIASIHQPSSEVFQL 246
GR I+ H+ E+F L
Sbjct: 190 GRVILYVSHR-MEEIFAL 206
|
Length = 501 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.0 bits (158), Expect = 9e-12
Identities = 54/190 (28%), Positives = 94/190 (49%), Gaps = 11/190 (5%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING-HKKAL 112
G ++ E+LT GH AI+GP+G GK+TLL L+ RL T G + ++G H +
Sbjct: 18 GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLS-RLM--TPAHGHVWLDGEHIQHY 74
Query: 113 AYGTSA----YVTQDDTLITTLTVKEAVYYSAQLQLP-DTMPKSDKKERAEVTIREMGLQ 167
A A + Q+ T +TV+E V P T + + +E ++ G+
Sbjct: 75 ASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGIT 134
Query: 168 DAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDG 227
+ + LSGGQ++R I++ + ++ LDEPT+ LD + ++ +++L + G
Sbjct: 135 HLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKG 194
Query: 228 IGRTIIASIH 237
T+ A +H
Sbjct: 195 Y--TLAAVLH 202
|
Length = 265 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 1e-11
Identities = 57/200 (28%), Positives = 97/200 (48%), Gaps = 42/200 (21%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTR----QTGKILINGHK 109
+L+ L+ K G +A++G +G GK+TLL L TR Q G+IL+NG
Sbjct: 351 QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLL-------TRAWDPQQGEILLNGQP 403
Query: 110 KALAYGTSAYVTQDDTLITTLT-VKEAVY-YSA----QLQLPDTMPKSDKKERAEVTIRE 163
+ Y + L ++ V + V+ +SA L L P + + EV +++
Sbjct: 404 ------IADY--SEAALRQAISVVSQRVHLFSATLRDNLLLAA--PNASDEALIEV-LQQ 452
Query: 164 MGLQ------DAMNTRI----RRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASY 213
+GL+ +N + R+LSGG++RR+ I+ +L LL LDEPT GLD+
Sbjct: 453 VGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETER 512
Query: 214 YVMSRIAKLGQRDGIGRTII 233
++ +A+ Q +T++
Sbjct: 513 QILELLAEHAQ----NKTVL 528
|
Length = 574 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 1e-11
Identities = 68/238 (28%), Positives = 101/238 (42%), Gaps = 40/238 (16%)
Query: 45 VTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAG---------RL-G 94
VTIV G G L ++ + G LAI+GPSGSGK+TL + G RL G
Sbjct: 322 VTIVPPG--GKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDG 379
Query: 95 SDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKK 154
+D +Q + H Y+ QD L TV E + A+ +K
Sbjct: 380 ADLKQWDRETFGKH--------IGYLPQDVELFPG-TVAENI---ARF---GENADPEKI 424
Query: 155 ERA-------EVTIR-EMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSG 206
A E+ +R G + LSGGQ++R++++ + PKL+ LDEP S
Sbjct: 425 IEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSN 484
Query: 207 LDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264
LD + + I L R G T++ H+PS + + +L G+ FG
Sbjct: 485 LDEEGEQALANAIKALKAR---GITVVVITHRPS--LLGCVDKILVLQDGRIARFGER 537
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 1e-11
Identities = 47/160 (29%), Positives = 87/160 (54%), Gaps = 11/160 (6%)
Query: 56 SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH-----KK 110
+ +L+D++ PG + A++GPSGSGK+T++ AL Q G++L++G +
Sbjct: 27 TLVLQDVSFTLHPGEVTALVGPSGSGKSTVV-ALLENFYQP--QGGQVLLDGKPISQYEH 83
Query: 111 ALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREM--GLQD 168
+ + V Q+ L ++++ + Y Q + + ++ +K A I E+ G
Sbjct: 84 KYLHSKVSLVGQEPVLFAR-SLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDT 142
Query: 169 AMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208
+ + +LSGGQK+RV+I+ ++ P++L LDE TS LD
Sbjct: 143 EVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALD 182
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (155), Expect = 1e-11
Identities = 53/182 (29%), Positives = 84/182 (46%), Gaps = 26/182 (14%)
Query: 67 KPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTL 126
G L+ I GP+G+GKT+LL LAG L G++L G + + Y D L
Sbjct: 25 NAGELVQIEGPNGAGKTSLLRILAG-LARPD--AGEVLWQG--EPIRRQRDEY--HQDLL 77
Query: 127 -------ITT-LTVKEAV-YYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRL 177
I T LT E + +Y D E + ++GL + +R+L
Sbjct: 78 YLGHQPGIKTELTALENLRFYQRLHGPGDD-------EALWEALAQVGLAGFEDVPVRQL 130
Query: 178 SGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIH 237
S GQ+RRV+++ LTR L LDEP + +D + + +A+ ++ G+ +I + H
Sbjct: 131 SAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGM---VILTTH 187
Query: 238 QP 239
Q
Sbjct: 188 QD 189
|
Length = 204 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 2e-11
Identities = 48/213 (22%), Positives = 93/213 (43%), Gaps = 30/213 (14%)
Query: 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKT----TLLDALAGR- 92
L+ ++L+V G G+ ++ ++ + G LA++G SGSGK+ ++L L
Sbjct: 7 LSIRNLSVAFHQEG--GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPA 64
Query: 93 ---LGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLI-----TTL----TVKEAVYYSA 140
G+ L+ ++ L +I T+L T+ + +
Sbjct: 65 AAHPSGSILFDGEDLLAASERQL----RGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEV- 119
Query: 141 QLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRR----LSGGQKRRVSISIEILTRPK 196
L+L + ++ + RA + +G+ + R+ LSGGQ++RV I++ + P
Sbjct: 120 -LRLHRGLSRAAARARALELLELVGIPEPEK-RLDAYPHELSGGQRQRVMIAMALANEPD 177
Query: 197 LLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIG 229
LL DEPT+ LD ++ + +L G+
Sbjct: 178 LLIADEPTTALDVTVQAQILDLLKELQAELGMA 210
|
Length = 534 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 2e-11
Identities = 58/226 (25%), Positives = 105/226 (46%), Gaps = 23/226 (10%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH----- 108
+ ++++++ +PG L ++G SGSGK+T AL RL G+I +G
Sbjct: 297 DHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALL-RL---INSQGEIWFDGQPLHNL 352
Query: 109 --KKALAYGTSAYVT-QD--DTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIRE 163
++ L V QD +L L V + + ++ P T+ + ++++ + E
Sbjct: 353 NRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEE 411
Query: 164 MGLQDAMNTRIR---RLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIA 220
+GL TR R SGGQ++R++I+ ++ +P L+ LDEPTS LD +++ +
Sbjct: 412 VGLDPE--TRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLK 469
Query: 221 KLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATA 266
L Q+ + I+ V L H + +L G+ V G
Sbjct: 470 SLQQKHQLAYLFISHDLHV---VRALCHQVIVLRQGEVVEQGDCER 512
|
Length = 529 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.9 bits (155), Expect = 2e-11
Identities = 63/225 (28%), Positives = 103/225 (45%), Gaps = 22/225 (9%)
Query: 55 SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDAL--AGRLGSDTRQTGKILINGHK--- 109
+ ILE ++ + AI+GPSG GK+T L L L S+ R G++
Sbjct: 19 TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYE 78
Query: 110 -----KALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREM 164
L S + + + ++V + V Y +++ PK + + E +++
Sbjct: 79 RRVNLNRLRRQVSMVHPKPN--LFPMSVYDNVAYG--VKIVGWRPKLEIDDIVESALKDA 134
Query: 165 GLQDAMNTRIRR----LSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIA 220
L D + +I + LSGGQ++R+ I+ + +PK+L +DEP GLD AS V S I
Sbjct: 135 DLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQ 194
Query: 221 KLGQRDGIGRTIIA-SIHQPS--SEVFQLFHNLCLLSAGQTVYFG 262
L R + I++ ++HQ S S+ F GQ V FG
Sbjct: 195 SLRLRSELTMVIVSHNLHQVSRLSDFTAFFKG-NENRIGQLVEFG 238
|
Length = 261 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 2e-11
Identities = 50/184 (27%), Positives = 78/184 (42%), Gaps = 19/184 (10%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA 113
G + IL +++ + G I GPSG GK+TLL +A + + G +L G +
Sbjct: 18 GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTS---GTLLFEGEDIS-T 73
Query: 114 YGTSAYVTQDDTLITTLTV-KEAVY------YSAQLQLPDTMPKSDKKERAEVTIREMGL 166
Y Q T T+ + VY + + Q PD + + L
Sbjct: 74 LKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPD-----PAIFLDD--LERFAL 126
Query: 167 QDAM-NTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQR 225
D + I LSGG+K+R+S+ + PK+L LDE TS LD + + V I + +
Sbjct: 127 PDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVRE 186
Query: 226 DGIG 229
I
Sbjct: 187 QNIA 190
|
Length = 225 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.8 bits (155), Expect = 2e-11
Identities = 54/212 (25%), Positives = 86/212 (40%), Gaps = 37/212 (17%)
Query: 73 AIMGPSGSGKTTLLDALAGRLGSDT---RQTGKILINGHKKALAYGTSAYVTQDDTLITT 129
AI+GPSG GKTTLL ++ R+ R GKI G + +T
Sbjct: 33 AIIGPSGCGKTTLLRSI-NRMNDHIPGFRVEGKIYFKGQD----------IYDPQLDVTE 81
Query: 130 LTVKEAVYYSAQLQLP--------------DTMPKSDKKERAEVTIREMGLQDA----MN 171
K + + P K E ++++ L D +N
Sbjct: 82 YRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELN 141
Query: 172 TRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRT 231
RLSGGQ++R+ I+ + P+++ LDEPTS LD A+ RI KL + T
Sbjct: 142 KPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIAT----QRIEKLLEELSENYT 197
Query: 232 IIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263
I+ H + ++ + + G+ + +GP
Sbjct: 198 IVIVTHN-IGQAIRIADYIAFMYRGELIEYGP 228
|
Length = 250 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 2e-11
Identities = 58/202 (28%), Positives = 87/202 (43%), Gaps = 41/202 (20%)
Query: 59 LEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRL--GSDTRQTGKILINGHKKALAYGT 116
L D+ G +AI+G +GSGK+TLL L G L S T G+ +I KK
Sbjct: 23 LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKK------ 76
Query: 117 SAYVTQDDTLITTLTVKEAVYYSAQLQLPDT-------------------MPKSDKKERA 157
+ + L K + + Q P+ + + D K++A
Sbjct: 77 -------NKKLKPLRKKVGIVF----QFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKA 125
Query: 158 EVTIREMGLQDAMNTRIR-RLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVM 216
I +GL + + R LSGGQ RRV+I+ + P++L LDEPT+GLD +M
Sbjct: 126 REMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMM 185
Query: 217 SRIAKLGQRDGIGRTIIASIHQ 238
KL + G+ T + H
Sbjct: 186 EMFYKLHKEKGL--TTVLVTHS 205
|
Length = 290 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 3e-11
Identities = 54/191 (28%), Positives = 91/191 (47%), Gaps = 17/191 (8%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA 113
G+ L D+T G L ++GPSG+GK++LL L L + ++G + I G+ +
Sbjct: 13 GAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVL--NL-LEMPRSGTLNIAGNHFDFS 69
Query: 114 YGTSA-----------YVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIR 162
S V Q L LTV++ + + L + K RAE +
Sbjct: 70 KTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL--GLSKDQALARAEKLLE 127
Query: 163 EMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKL 222
+ L+ + LSGGQ++RV+I+ ++ P++L DEPT+ LD + ++S I +L
Sbjct: 128 RLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIREL 187
Query: 223 GQRDGIGRTII 233
GI + I+
Sbjct: 188 -AETGITQVIV 197
|
Length = 242 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 3e-11
Identities = 53/198 (26%), Positives = 89/198 (44%), Gaps = 17/198 (8%)
Query: 48 VSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING 107
VS G L+ +T + +PG + + G SG+GK+TLL + G + GKI +G
Sbjct: 7 VSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICG---IERPSAGKIWFSG 63
Query: 108 HKKALAYGTS--------AYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEV 159
H + QD L+ TV + V A + D + R
Sbjct: 64 HDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNV---AIPLIIAGASGDDIRRRVSA 120
Query: 160 TIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRI 219
+ ++GL D +LSGG+++RV I+ ++ +P +L DEPT LD A S ++
Sbjct: 121 ALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLF 180
Query: 220 AKLGQRDGIGRTIIASIH 237
+ + +G T++ + H
Sbjct: 181 EEFNR---VGVTVLMATH 195
|
Length = 222 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.0 bits (153), Expect = 3e-11
Identities = 60/223 (26%), Positives = 102/223 (45%), Gaps = 21/223 (9%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAG--RLGSDTRQTGKILINGHK-- 109
G +L+ + + A+MGPSGSGK+TLL L + R +G++ ++G
Sbjct: 14 GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIF 73
Query: 110 ---KALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKK--ERAEVTIREM 164
V Q I L++ E V +L + + KS K+ ER + +
Sbjct: 74 KMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKL---NRLVKSKKELQERVRWALEKA 130
Query: 165 GLQDAMNTRIR----RLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIA 220
L D + R+ +LSGGQ++R+ I+ + +P++L DEPT+ LD + + S
Sbjct: 131 QLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFL 190
Query: 221 KLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263
+L + TI+ H P + ++ + L GQ V +GP
Sbjct: 191 ELKKD----MTIVLVTHFP-QQAARISDYVAFLYKGQIVEWGP 228
|
Length = 250 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.7 bits (152), Expect = 4e-11
Identities = 51/194 (26%), Positives = 85/194 (43%), Gaps = 40/194 (20%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGS---DTRQTGKILINGHKK 110
G L+ ++ + ++A +GPSG GK+T L L R+ TR G+I I+G
Sbjct: 14 GDFHALKGISMEIEEKSVVAFIGPSGCGKSTFL-RLFNRMNDLIPATRLEGEIRIDGRN- 71
Query: 111 ALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKS---------------DK-- 153
Y V + +++ V Q P+ PKS D
Sbjct: 72 --IYDKGVQVDE---------LRKNV--GMVFQRPNPFPKSIFENVAYGLRVNGVKDNAF 118
Query: 154 -KERAEVTIREMGLQDAMNTRIRR----LSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208
++R E T++ L D + +++ LSGGQ++R+ I+ + P +L +DEP S LD
Sbjct: 119 IRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALD 178
Query: 209 SAASYYVMSRIAKL 222
++ V I +L
Sbjct: 179 PISTAKVEELIHEL 192
|
Length = 250 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 4e-11
Identities = 51/190 (26%), Positives = 90/190 (47%), Gaps = 17/190 (8%)
Query: 59 LEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHK-------KA 111
++D++ + G +L + G G+G+T L+ AL G + G + ING +A
Sbjct: 276 VDDVSFSLRRGEILGVAGLVGAGRTELVQALFG--AYPGKFEGNVFINGKPVDIRNPAQA 333
Query: 112 LAYGTSAYVTQD---DTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEV--TIREMGL 166
+ G A V +D ++ L V + + S M E + I+ + +
Sbjct: 334 IRAGI-AMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKV 392
Query: 167 QDAM-NTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQR 225
+ A I RLSGG +++ ++ +LT P++L LDEPT G+D A Y + I +L Q
Sbjct: 393 KTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQE 452
Query: 226 DGIGRTIIAS 235
G+ +++S
Sbjct: 453 -GVAIIVVSS 461
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 6e-11
Identities = 55/195 (28%), Positives = 94/195 (48%), Gaps = 30/195 (15%)
Query: 59 LEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING----------- 107
L+++ + G + ++G +GSGK+TL+ L G L +GKI+I+G
Sbjct: 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKP---TSGKIIIDGVDITDKKVKLS 79
Query: 108 ---HKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREM 164
K L + Y ++T+ K+ + L L + + + R + + +
Sbjct: 80 DIRKKVGLVFQYPEYQLFEETI-----EKDIAFGPINLGLSE----EEIENRVKRAMNIV 130
Query: 165 GL--QDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKL 222
GL +D + LSGGQKRRV+I+ + PK+L LDEPT+GLD ++++I +L
Sbjct: 131 GLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKEL 190
Query: 223 GQRDGIGRTIIASIH 237
+ + TII H
Sbjct: 191 HKEYNM--TIILVSH 203
|
Length = 287 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 6e-11
Identities = 53/185 (28%), Positives = 86/185 (46%), Gaps = 35/185 (18%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHK-----KAL 112
++E+ + +PG +A++G SGSGK+T+ +AG +G+IL +G + +
Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQP---WSGEILFDGIPREEIPREV 550
Query: 113 AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPD-TMPKSDKKERA--------EVTIRE 163
+ A V QD L TV++ L L D T+P +D RA +T R
Sbjct: 551 LANSVAMVDQDIFLFEG-TVRD------NLTLWDPTIPDADL-VRACKDAAIHDVITSRP 602
Query: 164 MGL-----QDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSR 218
G + N LSGGQ++R+ I+ ++ P +L LDE TS LD +
Sbjct: 603 GGYDAELAEGGAN-----LSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDN 657
Query: 219 IAKLG 223
+ + G
Sbjct: 658 LRRRG 662
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.4 bits (154), Expect = 6e-11
Identities = 50/190 (26%), Positives = 98/190 (51%), Gaps = 20/190 (10%)
Query: 59 LEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSA 118
L +++ + G + ++G SG+GK+TL+ + + +G ++++G + L +++
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL---ERPTSGSVIVDG--QDLTTLSNS 75
Query: 119 YVT----------QDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD 168
+T Q L+++ TV V +L D PK + K + + +GL D
Sbjct: 76 ELTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL---DNTPKDEIKRKVTELLALVGLGD 132
Query: 169 AMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGI 228
++ LSGGQK+RV+I+ + + PK+L DE TS LD A + ++ + ++ +R G+
Sbjct: 133 KHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGL 192
Query: 229 GRTIIASIHQ 238
TI+ H+
Sbjct: 193 --TILLITHE 200
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 8e-11
Identities = 51/197 (25%), Positives = 89/197 (45%), Gaps = 46/197 (23%)
Query: 45 VTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKIL 104
V+ V KK IL+D++ PG + ++G +G+GK+TLL +AG + +
Sbjct: 10 VSKVVPPKK---EILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAG-VDKE-------- 57
Query: 105 INGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPK--------SDKKER 156
NG + Y+ Q+ L T TV+E V ++ D + + ++
Sbjct: 58 FNGEARPAPGIKVGYLPQEPQLDPTKTVRENVEEGVA-EIKDALDRFNEISAKFAEPDAD 116
Query: 157 AEVTIREMG-LQD----------------AMN--------TRIRRLSGGQKRRVSISIEI 191
+ + E LQ+ AM+ + +LSGG++RRV++ +
Sbjct: 117 MDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLL 176
Query: 192 LTRPKLLFLDEPTSGLD 208
L++P +L LDEPT+ LD
Sbjct: 177 LSKPDMLLLDEPTNHLD 193
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 9e-11
Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 38/179 (21%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDAL--AGRLGSDTRQTGKILINGHKKA 111
G L+ + + + A++GPSG GK+T L L L + G++L++G
Sbjct: 14 GDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDG---- 69
Query: 112 LAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKS---------------DKKER 156
Y + D + L + + + Q P+ P S DKK+
Sbjct: 70 ----QDIYKSDID--VNQLRKRVGMVF----QQPNPFPMSIYDNVAYGPRTHGIKDKKKL 119
Query: 157 AEV---TIREMGLQDAMNTRIRR----LSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208
E+ +++ L D + R+++ LSGGQ++R+ I+ + P++L +DEPTS LD
Sbjct: 120 DEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALD 178
|
Length = 250 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (150), Expect = 1e-10
Identities = 47/165 (28%), Positives = 83/165 (50%), Gaps = 15/165 (9%)
Query: 73 AIMGPSGSGKTTLLDALAGRLG---SDTRQTGKILING-----HKKALAYGTSAYVTQDD 124
++MGP+GSGKTT L L R+ S R +G +L+ G ++ L + +
Sbjct: 51 SLMGPTGSGKTTFLRTL-NRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQR 109
Query: 125 TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIR----RLSGG 180
+++ + V A ++ +P+ + + A+ + E+GL DA+ R+ RLSGG
Sbjct: 110 PNPFPMSIMDNVL--AGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGG 167
Query: 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQR 225
Q++ + ++ + P++L LDEPTS LD + + I L R
Sbjct: 168 QQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADR 212
|
Length = 276 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 1e-10
Identities = 49/195 (25%), Positives = 89/195 (45%), Gaps = 23/195 (11%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLL-------DALAGRLGSDTRQTGKILINGHKK 110
IL ++ G +AI+G SG+GK+T+L D +G + D + + ++
Sbjct: 278 ILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRR 337
Query: 111 ALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAM 170
A+ V QD L T+ + Y + + + + + I+ L +
Sbjct: 338 AIGI-----VPQDTVLFND-TIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQS--LPEGY 389
Query: 171 NTRIR----RLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRD 226
+T + +LSGG+K+RV+I+ IL P +L LDE TS LD+ + + + ++
Sbjct: 390 DTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSA-- 447
Query: 227 GIGRTIIASIHQPSS 241
GRT + H+ S+
Sbjct: 448 --GRTTLVIAHRLST 460
|
Length = 497 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 2e-10
Identities = 55/191 (28%), Positives = 91/191 (47%), Gaps = 18/191 (9%)
Query: 51 GKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING--- 107
GK ++L +++ K G +A++G SG GK+TL L +G ++ G + G
Sbjct: 20 GKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLL---VGLESPSQGNVSWRGEPL 76
Query: 108 ------HKKALAYGTSAYVTQD--DTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEV 159
+KA V QD + TV+E + L+ ++ K+++ RA
Sbjct: 77 AKLNRAQRKAFR-RDIQMVFQDSISAVNPRKTVREII--REPLRHLLSLDKAERLARASE 133
Query: 160 TIREMGLQDA-MNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSR 218
+R + L D+ ++ R +LSGGQ +RV ++ + PKLL LDE S LD V+
Sbjct: 134 MLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRL 193
Query: 219 IAKLGQRDGIG 229
+ KL Q+ G
Sbjct: 194 LKKLQQQFGTA 204
|
Length = 268 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 2e-10
Identities = 53/177 (29%), Positives = 85/177 (48%), Gaps = 38/177 (21%)
Query: 70 HLLAIMGPSGSGKTTLLDAL--AGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLI 127
++ AI+GPSG GK+T L A+ L TG ++ +G YG D+ L
Sbjct: 66 YVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGED---IYGKFT----DEVL- 117
Query: 128 TTLTVKEAVYYSAQLQLPDTMPKS---------------DKKERAEV---TIREMGLQDA 169
L K + + Q P+ PKS DKK+ E+ ++R+ L D
Sbjct: 118 --LRKKIGMVF----QKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDE 171
Query: 170 MNTRIRR----LSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKL 222
++ R+ + LSGGQ++R+ ++ + P++L LDEPTS LD A+ + I +L
Sbjct: 172 VSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQEL 228
|
Length = 286 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 2e-10
Identities = 47/192 (24%), Positives = 87/192 (45%), Gaps = 19/192 (9%)
Query: 72 LAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKA-LAYGTSAYVTQDDTLITTL 130
+ ++G +G+GK+TLL LAG D +G + + G + L G L
Sbjct: 51 IGLIGRNGAGKSTLLRLLAGIYPPD---SGTVTVRGRVSSLLGLGGG--------FNPEL 99
Query: 131 TVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIE 190
T +E +Y + +L + + + E+ + I L D ++ ++ S G K R++ +I
Sbjct: 100 TGRENIYLNGRLL---GLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIA 156
Query: 191 ILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNL 250
P +L +DE + D+A R+ +L ++ I+ S H PSS + +L
Sbjct: 157 TALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKT--VILVS-HDPSS-IKRLCDRA 212
Query: 251 CLLSAGQTVYFG 262
+L G+ + G
Sbjct: 213 LVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 2e-10
Identities = 64/211 (30%), Positives = 93/211 (44%), Gaps = 44/211 (20%)
Query: 20 SNKTANSLINVNEDDGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSG 79
+ + A++L++V KDL VT + G + + DL + G L I+G SG
Sbjct: 5 AQQQADALLDV----------KDLRVTFST--PDGDVTAVNDLNFSLRAGETLGIVGESG 52
Query: 80 SGKTTLLDALAGRLGSDTRQTGKILINGHK------KALAYGTS---AYVTQDDTLITTL 130
SGK+ AL G L ++ R G NG + K L + + + QD +T+L
Sbjct: 53 SGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDP--MTSL 110
Query: 131 TVKEAVYYSAQL----QLPDTMPKSDKKERAEVTIREMGLQDA---------MNTRIRRL 177
V QL L M K E E ++R + DA M
Sbjct: 111 NPYMRV--GEQLMEVLMLHKGM---SKAEAFEESVRML---DAVKMPEARKRMKMYPHEF 162
Query: 178 SGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208
SGG ++RV I++ +L RPKLL DEPT+ LD
Sbjct: 163 SGGMRQRVMIAMALLCRPKLLIADEPTTALD 193
|
Length = 330 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 2e-10
Identities = 46/150 (30%), Positives = 75/150 (50%), Gaps = 18/150 (12%)
Query: 73 AIMGPSGSGKTTLLDALAGR---LGSDTRQTGKILINGHK-------KALAYGTSAYVTQ 122
A +GPSG GK+TLL R L + R G+IL++G AL V Q
Sbjct: 43 AFIGPSGCGKSTLLRTF-NRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQ 101
Query: 123 DDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGL----QDAMNTRIRRLS 178
T +++ + + + +L + + +++ ER E + + L +D ++ LS
Sbjct: 102 KPTPFP-MSIYDNIAFGVRLF--EKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLS 158
Query: 179 GGQKRRVSISIEILTRPKLLFLDEPTSGLD 208
GGQ++R+ I+ I RP++L LDEP S LD
Sbjct: 159 GGQQQRLCIARGIAIRPEVLLLDEPCSALD 188
|
Length = 260 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 2e-10
Identities = 50/200 (25%), Positives = 89/200 (44%), Gaps = 33/200 (16%)
Query: 57 SILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKK------ 110
+L +++ G + + GPSGSGK+TLL +L D G+IL+ H+
Sbjct: 25 PVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDE---GQILVR-HEGEWVDLV 80
Query: 111 --------ALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIR 162
+ T YV+Q +I ++ + V A+ L +P+ + +A +
Sbjct: 81 TAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVV---AEPLLARGVPREVARAKAADLLT 137
Query: 163 EMGLQDAMNTRIRRL-----SGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMS 217
+ L + R+ L SGG+++RV+I+ + +L LDEPT+ LD+ V+
Sbjct: 138 RLNLPE----RLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVE 193
Query: 218 RIAKLGQRDGIGRTIIASIH 237
I + R G ++ H
Sbjct: 194 LIREAKAR---GAALVGIFH 210
|
Length = 235 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 2e-10
Identities = 42/163 (25%), Positives = 78/163 (47%), Gaps = 27/163 (16%)
Query: 67 KPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQT-GKILINGHKKALAYGTSAYVT---- 121
+ +++++GP+G+GKTT+ + L G + T G IL+ G + +
Sbjct: 29 REQEIVSLIGPNGAGKTTVFNCLTGFY----KPTGGTILLRGQ--HIEGLPGHQIARMGV 82
Query: 122 ----QDDTLITTLTVKEAVYYSAQLQLPDTM------------PKSDKKERAEVTIREMG 165
Q L +TV E + + QL + +S+ +RA + +G
Sbjct: 83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVG 142
Query: 166 LQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208
L + N + L+ GQ+RR+ I+ ++T+P++L LDEP +GL+
Sbjct: 143 LLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLN 185
|
Length = 255 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 2e-10
Identities = 49/173 (28%), Positives = 81/173 (46%), Gaps = 26/173 (15%)
Query: 67 KPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH----------KKALAYGT 116
G +A++GPSG+GKT+LL+AL G L G + ING +K L
Sbjct: 374 PAGQRIALVGPSGAGKTSLLNALLGFL----PYQGSLKINGIELRELDPESWRKHL---- 425
Query: 117 SAYVTQDDTLITTLTVKEAVYYSAQL----QLPDTMPKSDKKERAEVTIREMGLQDAMNT 172
++V Q+ L T+++ V QL + + E + + GL +
Sbjct: 426 -SWVGQNPQLPHG-TLRDNVLLGNPDASDEQLQQALENAWVSEF--LPLLPQGLDTPIGD 481
Query: 173 RIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQR 225
+ LS GQ +R++++ +L +LL LDEPT+ LD+ + VM + +R
Sbjct: 482 QAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRR 534
|
Length = 588 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 3e-10
Identities = 56/212 (26%), Positives = 100/212 (47%), Gaps = 15/212 (7%)
Query: 67 KPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTS-------AY 119
+PG + + G +G+GK+TL+ L+G T G+I +G A
Sbjct: 25 RPGECVGLCGENGAGKSTLMKILSGVYPHGTWD-GEIYWSG-SPLKASNIRDTERAGIVI 82
Query: 120 VTQDDTLITTLTVKEAVYYSAQLQLP-DTMPKSDKKERAEVTIREMGLQDAMNTR-IRRL 177
+ Q+ TL+ L+V E ++ ++ LP M + RA+ +RE+ L TR +
Sbjct: 83 IHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDY 142
Query: 178 SGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIH 237
GGQ++ V I+ + + +LL LDEP+S L + ++ I L + G+ I+ H
Sbjct: 143 GGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDL-KAHGVACVYIS--H 199
Query: 238 QPSSEVFQLFHNLCLLSAGQTVYFGPATAANE 269
+ +EV + +C++ GQ V + +E
Sbjct: 200 K-LNEVKAVCDTICVIRDGQHVATKDMSTMSE 230
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 3e-10
Identities = 52/215 (24%), Positives = 94/215 (43%), Gaps = 35/215 (16%)
Query: 71 LLAIMGPSGSGKTTLLDALAG--RLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTL-- 126
+ A+MGPSG GK+TLL L + R G++ + +G + Y D +
Sbjct: 32 VFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRL--------FGRNIYSPDVDPIEV 83
Query: 127 -------------ITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTR 173
LT+ + V +L K + ER E +++ L D + R
Sbjct: 84 RREVGMVFQYPNPFPHLTIYDNVAIGVKLN-GLVKSKKELDERVEWALKKAALWDEVKDR 142
Query: 174 IR----RLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIG 229
+ LSGGQ++R+ I+ + +PK+L +DEPT+ +D + + + +L +
Sbjct: 143 LNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKE---- 198
Query: 230 RTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264
TI+ H P ++ ++ + L G+ + GP
Sbjct: 199 YTIVLVTHSP-AQAARVSDYVAFLYLGKLIEVGPT 232
|
Length = 253 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 3e-10
Identities = 52/188 (27%), Positives = 87/188 (46%), Gaps = 30/188 (15%)
Query: 69 GHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH-----------KKALAYGTS 117
G +L G GSG+T L++ L G D R G+I +NG KK +AY T
Sbjct: 289 GEILGFAGLVGSGRTELMNCL---FGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITE 345
Query: 118 AYVTQDDTLITTLTVKEAVYYSAQLQLPD------TMPKSDKKERAEVTIREMGLQ-DAM 170
+ +D+ ++ + + S L+ + D++ AE + L+ ++
Sbjct: 346 S--RRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSV 403
Query: 171 NTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAAS---YYVMSRIAKLGQRDG 227
N I LSGG +++V IS + P+++ DEPT G+D A Y VM ++A DG
Sbjct: 404 NQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLAD----DG 459
Query: 228 IGRTIIAS 235
+++S
Sbjct: 460 KVILMVSS 467
|
Length = 510 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (146), Expect = 3e-10
Identities = 58/223 (26%), Positives = 96/223 (43%), Gaps = 31/223 (13%)
Query: 69 GHLLAIMGPSGSGKTTLLDAL--AGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTL 126
+ A++GPSG GK+T L L L TG + + G Y + V Q
Sbjct: 31 NEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQN---IYAPNEDVVQLRKQ 87
Query: 127 ITTL---------TVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRR- 176
+ + ++ E V Y L+L K+ E E ++++ + D + +
Sbjct: 88 VGMVFQQPNPFPFSIYENVIYG--LRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHES 145
Query: 177 ---LSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTII 233
LSGGQ++RV I+ + +P ++ LDEPTS LD +S + + + +L + TII
Sbjct: 146 ALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQ----YTII 201
Query: 234 A---SIHQPS----SEVFQLFHNLCLLSAGQTVYFGPATAANE 269
S+HQ S F L NL + + ++ P E
Sbjct: 202 LVTHSMHQASRISDKTAFFLTGNLIEFADTKQMFLNPKEKETE 244
|
Length = 252 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (146), Expect = 3e-10
Identities = 57/187 (30%), Positives = 93/187 (49%), Gaps = 18/187 (9%)
Query: 59 LEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING------HKKAL 112
LE++ K G + I+G +GSGK+TL L G L Q GK+L++G K
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRP---QKGKVLVSGIDTGDFSKLQG 74
Query: 113 AYGTSAYVTQD-DTLITTLTVKEAVYYSAQ-LQLPDTMPKSDKKERAEVTIREMGLQDAM 170
V Q+ +T TV+E + + + L LP + ++R + + E+GL+
Sbjct: 75 IRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPI----EIRKRVDRALAEIGLEKYR 130
Query: 171 NTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGR 230
+ + LSGGQ + V+++ + P+ L DE TS LD + V+ RI KL ++ G+
Sbjct: 131 HRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEK---GK 187
Query: 231 TIIASIH 237
TI+ H
Sbjct: 188 TIVYITH 194
|
Length = 274 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 3e-10
Identities = 54/210 (25%), Positives = 90/210 (42%), Gaps = 36/210 (17%)
Query: 69 GHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING----HKKALAYGTSAYVTQDD 124
G AI+G +GSGK+TL+ + L TG + ++ HK T+D
Sbjct: 33 GKYYAIVGQTGSGKSTLIQNINALLKP---TTGTVTVDDITITHK-----------TKDK 78
Query: 125 TLITTLTVKEAVYYSAQLQL-PDT-------------MPKSDKKERAEVTIREMGL-QDA 169
+ V+ + QL DT M + K A + ++G +D
Sbjct: 79 YIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDV 138
Query: 170 MNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIG 229
M+ ++SGGQ R+++I + P ++ LDEPT+GLD + VM + L +
Sbjct: 139 MSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDE--N 196
Query: 230 RTIIASIHQPSSEVFQLFHNLCLLSAGQTV 259
+TII H +EV + + ++ G V
Sbjct: 197 KTIILVSHD-MNEVARYADEVIVMKEGSIV 225
|
Length = 286 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 3e-10
Identities = 46/192 (23%), Positives = 86/192 (44%), Gaps = 30/192 (15%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDAL--AGRLGSDTRQTGKILINGHKKA 111
G L+++ + AI+GPSG GK+T + L ++ + + TG++ NG
Sbjct: 23 GQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSN-- 80
Query: 112 LAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTM------------PKSDKK--ERA 157
+ + + L + + P ++ K+ KK E
Sbjct: 81 --------ILKGKVDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIV 132
Query: 158 EVTIREMGLQDAMNTRIRR----LSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASY 213
E +++++ L D + R+ LSGGQ++R+ I+ + T P +L +DEPTS LD ++
Sbjct: 133 EKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTR 192
Query: 214 YVMSRIAKLGQR 225
+ I KL ++
Sbjct: 193 KIEELILKLKEK 204
|
Length = 259 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 3e-10
Identities = 60/204 (29%), Positives = 89/204 (43%), Gaps = 48/204 (23%)
Query: 59 LEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSA 118
L D+ + G A +G +GSGK+T++ L+NG L T
Sbjct: 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQ----------------LLNG----LHVPTQG 62
Query: 119 YVTQDDTLITTLTVKE----------AVYYSAQLQLPDTMPKSD----------KKERAE 158
V DDTLIT+ + + V+ + QL + D +E AE
Sbjct: 63 SVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAE 122
Query: 159 VTIRE----MGLQDAMNTRIR-RLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASY 213
RE +G+ +++ + LSGGQ RRV+I+ + PK+L LDEPT+GLD
Sbjct: 123 ALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRK 182
Query: 214 YVMSRIAKLGQRDGIGRTIIASIH 237
+M+ KL Q G TI+ H
Sbjct: 183 ELMTLFKKLHQS---GMTIVLVTH 203
|
Length = 280 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 5e-10
Identities = 55/210 (26%), Positives = 97/210 (46%), Gaps = 24/210 (11%)
Query: 61 DLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH-----KKALAYG 115
D T +A G + A++G +G+GK+TL+ +AG + D +G + I G+ A A+
Sbjct: 31 DFTLHA--GEVHALLGGNGAGKSTLMKIIAGIVPPD---SGTLEIGGNPCARLTPAKAHQ 85
Query: 116 TSAY-VTQDDTLITTLTVKEAVYYSAQLQLPDTMPKS-DKKERAEVTIREMGLQDAMNTR 173
Y V Q+ L L+VKE + + +PK ++ + + +G Q +++
Sbjct: 86 LGIYLVPQEPLLFPNLSVKENILFG--------LPKRQASMQKMKQLLAALGCQLDLDSS 137
Query: 174 IRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTII 233
L ++ V I ++ ++L LDEPT+ L A + + SRI +L G+G I
Sbjct: 138 AGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIREL-LAQGVG---I 193
Query: 234 ASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263
I E+ QL + ++ G G
Sbjct: 194 VFISHKLPEIRQLADRISVMRDGTIALSGK 223
|
Length = 510 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.1 bits (148), Expect = 6e-10
Identities = 54/169 (31%), Positives = 89/169 (52%), Gaps = 13/169 (7%)
Query: 48 VSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING 107
++ SS + D++ AK G +AI+GP+G+GKTTL++ L R+ T G+ILI+G
Sbjct: 340 ITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQ-RVYDPT--VGQILIDG 396
Query: 108 ------HKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTI 161
+++L + A V QD L +++E + + + + ++ K A I
Sbjct: 397 IDINTVTRESLR-KSIATVFQDAGLFNR-SIRENIRLGREGATDEEVYEAAKAAAAHDFI 454
Query: 162 --REMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208
R G + R RLSGG+++R++I+ IL +L LDE TS LD
Sbjct: 455 LKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALD 503
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 60.5 bits (148), Expect = 7e-10
Identities = 54/203 (26%), Positives = 83/203 (40%), Gaps = 63/203 (31%)
Query: 47 IVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILIN 106
+V K+ IL+D++ PG + ++G +G+GK+TLL +AG D G+
Sbjct: 15 VVPPKKQ----ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV---DKEFEGEAR-- 65
Query: 107 GHKKALAYGTS-AYVTQDDTLITTLTVKEAV---------------YYSAQLQLPDTMPK 150
A G Y+ Q+ L TV+E V A PD
Sbjct: 66 -----PAPGIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDA--D 118
Query: 151 SDKKERAEVTIREMG-LQD----------------AMN--------TRIRRLSGGQKRRV 185
D E G LQ+ AM+ ++ +LSGG++RRV
Sbjct: 119 FDA------LAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRV 172
Query: 186 SISIEILTRPKLLFLDEPTSGLD 208
++ +L +P +L LDEPT+ LD
Sbjct: 173 ALCRLLLEKPDMLLLDEPTNHLD 195
|
Length = 556 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 7e-10
Identities = 53/219 (24%), Positives = 95/219 (43%), Gaps = 41/219 (18%)
Query: 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDT 97
+ +K ++ T L D++ G A++G +GSGK+T+ + G L D
Sbjct: 6 VEFKHVSFTY----PDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDD 61
Query: 98 RQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDT---------- 147
KI ++G +T T ++E V Q PD
Sbjct: 62 NPNSKITVDGIT----------LTAK----TVWDIREKV--GIVFQNPDNQFVGATVGDD 105
Query: 148 ---------MPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLL 198
+P+ + + + ++G+ D +++ LSGGQK+RV+I+ + PK++
Sbjct: 106 VAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKII 165
Query: 199 FLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIH 237
LDE TS LD A ++ I KL +++ + T+I+ H
Sbjct: 166 ILDESTSMLDPAGKEQILKLIRKLKKKNNL--TVISITH 202
|
Length = 282 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 1e-09
Identities = 48/200 (24%), Positives = 96/200 (48%), Gaps = 13/200 (6%)
Query: 67 KPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTS-------AY 119
+ G ++++ G +G+GK+TL+ L+G T + G+I+ G + A A
Sbjct: 29 RAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYE-GEIIFEGEELQ-ASNIRDTERAGIAI 86
Query: 120 VTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSG 179
+ Q+ L+ L+V E ++ ++ M RA+ + ++ L T + L
Sbjct: 87 IHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGL 146
Query: 180 GQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQP 239
GQ++ V I+ + + +LL LDEPT+ L + + V+ I + + GI I+ H+
Sbjct: 147 GQQQLVEIAKALNKQARLLILDEPTASL-TESETAVLLDIIRDLKAHGIACIYIS--HK- 202
Query: 240 SSEVFQLFHNLCLLSAGQTV 259
+EV + +C++ G+ +
Sbjct: 203 LNEVKAISDTICVIRDGRHI 222
|
Length = 506 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 60.3 bits (146), Expect = 1e-09
Identities = 47/176 (26%), Positives = 80/176 (45%), Gaps = 29/176 (16%)
Query: 53 KGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL 112
+ L +T G L+A++G G GK++LL AL L + G + + G ++
Sbjct: 648 RDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSAL---LAEMDKVEGHVHMKG---SV 701
Query: 113 AYGTSAYVTQDDTLITTLTVKEAV---YYSAQLQ----LPD--TMPKSDKKERAEVTIRE 163
AY Q+D+L + +A+ YY L+ LPD +P D+ E I E
Sbjct: 702 AYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTE-----IGE 756
Query: 164 MGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRI 219
G+ LSGGQK+RVS++ + + + D+P S +D+ ++ +
Sbjct: 757 KGVN---------LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHV 803
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 2e-09
Identities = 56/189 (29%), Positives = 83/189 (43%), Gaps = 42/189 (22%)
Query: 73 AIMGPSGSGKTTLLDAL--AGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTL 130
A++GPSG GK+T L L L R G+IL++G + Y D + L
Sbjct: 36 ALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDG--------ENIYDPHVD--VVEL 85
Query: 131 TVKEAVYYSAQLQLPDTMPKS---------------DKK---ERAEVTIREMGLQDAMNT 172
+ + + Q P+ PKS DK ER E ++R L D +
Sbjct: 86 RRRVGMVF----QKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKD 141
Query: 173 RIRR----LSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGI 228
R+ LSGGQ++R+ I+ + P++L +DEP S LD A+ + I +L R
Sbjct: 142 RLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKAR--- 198
Query: 229 GRTIIASIH 237
TII H
Sbjct: 199 -YTIIIVTH 206
|
Length = 253 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.1 bits (140), Expect = 2e-09
Identities = 62/211 (29%), Positives = 95/211 (45%), Gaps = 35/211 (16%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTS 117
+L+ L + ++G +G GK+TL L+G L Q G +L G K L Y
Sbjct: 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRP---QKGAVLWQG--KPLDYSKR 70
Query: 118 ---------AYVTQD-DTLITTLTVKEAVYYSAQ-LQLPDTMPKSDKKERAEVTIR---E 163
A V QD + I + + +S + L +P+ AE+T R
Sbjct: 71 GLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPE----------AEITRRVDEA 120
Query: 164 MGLQDAMNTR---IRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAAS---YYVMS 217
+ L DA + R I+ LS GQK+RV+I+ ++ + + L LDEPT+GLD A ++
Sbjct: 121 LTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIR 180
Query: 218 RIAKLGQRDGIGRTIIASIHQPSSEVFQLFH 248
RI G I I I++ S V+ L
Sbjct: 181 RIVAQGNHVIISSHDIDLIYEISDAVYVLRQ 211
|
Length = 271 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 2e-09
Identities = 62/215 (28%), Positives = 96/215 (44%), Gaps = 25/215 (11%)
Query: 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGR----- 92
L+ KDL V++ +IL L +PG + AIMGP+GSGK+TL LAGR
Sbjct: 2 LSIKDLHVSVEDK------AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEV 55
Query: 93 LGSDTRQTGKILIN-------GHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLP 145
G GK L+ G +A+ Y + + ++ A+ +
Sbjct: 56 TGGTVEFKGKDLLELSPEDRAGEGIFMAF---QYPVEIPGVSNQFFLQTALNAVRSYRGQ 112
Query: 146 DTMPKSDKKERAEVTIREMGLQDAMNTRIRRL--SGGQKRRVSISIEILTRPKLLFLDEP 203
+ + + D ++ E I + + + + TR + SGG+K+R I + P+L LDE
Sbjct: 113 EPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDES 172
Query: 204 TSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQ 238
SGLD A V + L RDG II + +Q
Sbjct: 173 DSGLDIDALKIVADGVNSL--RDGKRSFIIVTHYQ 205
|
Length = 248 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 2e-09
Identities = 35/146 (23%), Positives = 66/146 (45%), Gaps = 19/146 (13%)
Query: 64 GYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQD 123
G G ++ I+GP+G GKTT + LAG + D + + +Y Q
Sbjct: 362 GEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKV------------SYKPQY 409
Query: 124 DTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKR 183
+ TV++ + + + + K++ ++ + L+D + + LSGG+ +
Sbjct: 410 ISPDYDGTVEDLLRSAIRSAFGSSYFKTE-------IVKPLNLEDLLERPVDELSGGELQ 462
Query: 184 RVSISIEILTRPKLLFLDEPTSGLDS 209
RV+I+ + L LDEP++ LD
Sbjct: 463 RVAIAAALSREADLYLLDEPSAYLDV 488
|
Length = 591 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.3 bits (138), Expect = 3e-09
Identities = 48/159 (30%), Positives = 76/159 (47%), Gaps = 24/159 (15%)
Query: 71 LLAIMGPSGSGKTTLLDALAGRLGSDTRQ---TGKILINGHKKALAYGTS---------- 117
L A++GPSG GK+T L L R+ D TG+I G YG+
Sbjct: 32 LTALIGPSGCGKSTFLRCL-NRMNDDIENIKITGEIKFEGQN---IYGSKMDLVELRKEV 87
Query: 118 AYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGL----QDAMNTR 173
V Q T +V + V Y L++ K +R E ++++ + +D ++
Sbjct: 88 GMVFQQPTPFP-FSVYDNVAYG--LKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRN 144
Query: 174 IRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAAS 212
+ SGGQ++R+ I+ + RPK++ LDEPTS LD +S
Sbjct: 145 AQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISS 183
|
Length = 251 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 3e-09
Identities = 57/200 (28%), Positives = 89/200 (44%), Gaps = 27/200 (13%)
Query: 55 SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHK-KALA 113
LE++ KPG +L I GP+GSGK+TLL +L R D + G I + L
Sbjct: 327 DHPALENVNFTLKPGQMLGICGPTGSGKSTLL-SLIQRH-FDVSE-GDIRFHDIPLTKLQ 383
Query: 114 Y----GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERA-------EVTIR 162
A V+Q T + V + L PD + E + +R
Sbjct: 384 LDSWRSRLAVVSQ-----TPFLFSDTVANNIALGRPDATQ--QEIEHVARLASVHDDILR 436
Query: 163 -EMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAK 221
G + R LSGGQK+R+SI+ +L ++L LD+ S +D + ++ + +
Sbjct: 437 LPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQ 496
Query: 222 LGQRDGIGRTIIASIHQPSS 241
G+ GRT+I S H+ S+
Sbjct: 497 WGE----GRTVIISAHRLSA 512
|
Length = 569 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.0 bits (137), Expect = 3e-09
Identities = 50/184 (27%), Positives = 89/184 (48%), Gaps = 19/184 (10%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLL-------DALAGRLGSDTRQTGKILIN 106
G L D+ + + A++G SG GK+T L D +A ++ GK + N
Sbjct: 13 GKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIA-KIDGLVEIEGKDVKN 71
Query: 107 GHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVT--IREM 164
AL Q + + + + E + Y+ +L M K+ +E A V ++++
Sbjct: 72 QDVVALRKNVGMVFQQPNVFVKS--IYENISYAPKLH---GMIKNKDEEEALVVDCLQKV 126
Query: 165 GLQDAMNTRIRR----LSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIA 220
GL + + ++++ LSGGQ++R+ I+ + +PKLL LDEPTS LD +S + +
Sbjct: 127 GLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLK 186
Query: 221 KLGQ 224
+L
Sbjct: 187 ELSH 190
|
Length = 246 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 3e-09
Identities = 60/234 (25%), Positives = 105/234 (44%), Gaps = 40/234 (17%)
Query: 69 GHLLAIMGPSGSGKTT-------LLDALAGRLGSDTRQTGKILINGH---------KKAL 112
G ++ I+G SGSGK+ L+D GR+ ++ K+ NG ++ L
Sbjct: 33 GEVVGIVGESGSGKSVSSLAIMGLID-YPGRVMAE-----KLEFNGQDLQRISEKERRNL 86
Query: 113 AYGTSAYVTQDDTLITTLTVKEAVYYS--AQLQLPDTMPKSDKKERAEVTIREMGLQDA- 169
A + QD +T+L V + +++ K +++RA + ++G+ D
Sbjct: 87 VGAEVAMIFQDP--MTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPA 144
Query: 170 --MNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDG 227
++ +LSGG +RV I++ I RPKLL DEPT+ LD ++ + +L Q++
Sbjct: 145 SRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKEN 204
Query: 228 IGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANEFFAFNGFPCPTH 281
+ +I + V + H + ++ AGQ V G A F P H
Sbjct: 205 MALVLIT---HDLALVAEAAHKIIVMYAGQVVETGKAHDI--------FRAPRH 247
|
Length = 326 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (138), Expect = 3e-09
Identities = 45/172 (26%), Positives = 82/172 (47%), Gaps = 8/172 (4%)
Query: 69 GHLLAIMGPSGSGKTT---LLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDT 125
G ++I+G +GSGK+T L+D L + G++L + L D
Sbjct: 33 GEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDN 92
Query: 126 LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRV 185
TV++ V + + Q +P+ + +R + + + + D RLSGGQK+RV
Sbjct: 93 QFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRV 149
Query: 186 SISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIH 237
+++ I RP+++ LDE TS LD +M I ++ ++ T+++ H
Sbjct: 150 AVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEI--KEKYQLTVLSITH 199
|
Length = 277 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 55.1 bits (134), Expect = 4e-09
Identities = 45/193 (23%), Positives = 84/193 (43%), Gaps = 55/193 (28%)
Query: 67 KPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTL 126
+ G + A++G +G+GK+TL+ L+G D+ G+IL++G +
Sbjct: 24 RRGEVHALLGENGAGKSTLMKILSGLYKPDS---GEILVDGKE----------------- 63
Query: 127 ITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVS 186
++ + ++A R G+ AM + +LS G+++ V
Sbjct: 64 VSFASPRDA--------------------------RRAGI--AM---VYQLSVGERQMVE 92
Query: 187 ISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQL 246
I+ + +LL LDEPT+ L A + I +L + G +I H+ EVF++
Sbjct: 93 IARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQ---GVAVIFISHRL-DEVFEI 148
Query: 247 FHNLCLLSAGQTV 259
+ +L G+ V
Sbjct: 149 ADRVTVLRDGRVV 161
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 5e-09
Identities = 50/167 (29%), Positives = 78/167 (46%), Gaps = 39/167 (23%)
Query: 73 AIMGPSGSGKTTLLDAL--AGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTL 130
A++GPSG GK+TLL L L + TGK+ ++G YG + + L
Sbjct: 33 ALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGED---IYG--------NIDVADL 81
Query: 131 TVKEAVYYSAQLQLPDTMPKS---------------DKKERAEV---TIREMGLQDAMNT 172
+K + + Q P+ P S DKK EV ++R L D +
Sbjct: 82 RIKVGMVF----QKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKD 137
Query: 173 RIRR----LSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYV 215
R++ LSGGQ++R+ I+ I P ++ +DEPTS LD A++ +
Sbjct: 138 RLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKI 184
|
Length = 249 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 5e-09
Identities = 54/192 (28%), Positives = 91/192 (47%), Gaps = 24/192 (12%)
Query: 59 LEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHK--------- 109
L++++ + G +A++G +GSGK+TL+ L +G I I G+
Sbjct: 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKP---SSGTITIAGYHITPETGNKN 79
Query: 110 -KALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDK--KERAEVTIREMGL 166
K L S + + TV + V + P S+ KE+A ++++GL
Sbjct: 80 LKKLRKKVSLVFQFPEAQLFENTVLKDVEFG-----PKNFGFSEDEAKEKALKWLKKVGL 134
Query: 167 -QDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQR 225
+D ++ LSGGQ RRV+I+ + P++L LDEP +GLD +M ++ K Q+
Sbjct: 135 SEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMM-QLFKDYQK 193
Query: 226 DGIGRTIIASIH 237
G T+I H
Sbjct: 194 A--GHTVILVTH 203
|
Length = 287 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 6e-09
Identities = 48/205 (23%), Positives = 86/205 (41%), Gaps = 44/205 (21%)
Query: 67 KPGHLLAIMGPSGSGKTTLLDALAGR----LGSDTRQTGKILINGHKKALAYGTS--AYV 120
+PG ++ I+GP+G GK+T L LAG LG + + GT Y
Sbjct: 98 RPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFR----GTELQNYF 153
Query: 121 TQDDTLITTLTVKEAVYYSAQLQLPDTMPK------------SDKKERAEVTIREMGLQD 168
+ + + + Q D +PK D++ + + + +GL++
Sbjct: 154 KK--------LYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLEN 205
Query: 169 AMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGI 228
++ + LSGG+ +RV+I+ +L + F DEP+S LD + QR
Sbjct: 206 VLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLD-------------IRQRLNA 252
Query: 229 GRTIIASIHQPSSEVFQLFHNLCLL 253
R +I + + V + H+L +L
Sbjct: 253 AR-VIRELAEDGKYVIVVEHDLAVL 276
|
Length = 591 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 7e-09
Identities = 48/167 (28%), Positives = 72/167 (43%), Gaps = 38/167 (22%)
Query: 73 AIMGPSGSGKTTLLDALAG--RLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTL 130
AI+GPSG GK+T + L L + TGKIL + S V + T + +
Sbjct: 54 AIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQN---IFDKSYSVEELRTNVGMV 110
Query: 131 TVKEAVYYSAQLQLPDTMPKS---------------DKK---ERAEVTIREMGLQDAMNT 172
Q P+ PKS DKK E E ++R + D +
Sbjct: 111 -----------FQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKD 159
Query: 173 RIRR----LSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYV 215
R+ LSGGQ++R+ I+ + P ++ +DEPTS LD ++ V
Sbjct: 160 RLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKV 206
|
Length = 271 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 7e-09
Identities = 63/216 (29%), Positives = 95/216 (43%), Gaps = 48/216 (22%)
Query: 73 AIMGPSGSGKTTLLDALAGRLGSDT----RQTGKILINGHKKALAYGTSAYVTQDDTLIT 128
A +GPSG GK+T L L R+ +DT R TGKI ++G Y V +
Sbjct: 49 AFIGPSGCGKSTFLRCL-NRM-NDTIDGCRVTGKITLDGED---IYDPRLDVVE------ 97
Query: 129 TLTVKEAVYYSAQLQLPDTMPKS-------------------DKKERAEVTIREMGLQDA 169
L + + + Q P+ PKS + E E ++R+ GL +
Sbjct: 98 -LRARVGMVF----QKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEE 152
Query: 170 MNTRIRR----LSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQR 225
+ R+ LSGGQ++R+ I+ I P+++ +DEP S LD A+ V I +L Q
Sbjct: 153 VKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQN 212
Query: 226 DGIGRTIIASIHQPSSEVFQ---LFHNLCLLSAGQT 258
I I+ Q ++ V Q FH L+ G T
Sbjct: 213 YTI--VIVTHSMQQAARVSQRTAFFHLGNLVEVGDT 246
|
Length = 267 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 7e-09
Identities = 51/199 (25%), Positives = 89/199 (44%), Gaps = 44/199 (22%)
Query: 70 HLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHK---KALAYGTSAYVTQDDTL 126
+ A +GPSG GK+T+L RL LI G + K +G + Y
Sbjct: 37 QITAFIGPSGCGKSTILRCF-NRLND--------LIPGFRVEGKVTFHGKNLY----APD 83
Query: 127 ITTLTVKEAVYYSAQLQLPDTMPKS----------------DKKERAEVTIREMGLQDAM 170
+ + V+ + Q P+ PKS D E E ++R+ L D +
Sbjct: 84 VDPVEVRRRI--GMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEV 141
Query: 171 NTRIRR----LSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRD 226
++++ LSGGQ++R+ I+ I +P+++ +DEP S LD ++ + + +L ++
Sbjct: 142 KDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQ- 200
Query: 227 GIGRTIIASIH--QPSSEV 243
TII H Q ++ V
Sbjct: 201 ---YTIIIVTHNMQQAARV 216
|
Length = 264 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 8e-09
Identities = 51/218 (23%), Positives = 101/218 (46%), Gaps = 25/218 (11%)
Query: 59 LEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING-------HKKA 111
L+ + PG + A++G +G+GK+TL+ L+G G I IN HK A
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSG---IHEPTKGTITINNINYNKLDHKLA 77
Query: 112 LAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLP-------DTMPKSDKKERAEVTIREM 164
G + Q+ ++I LTV E +Y + + + + + RA + + +
Sbjct: 78 AQLGIGI-IYQELSVIDELTVLENLYIG---RHLTKKVCGVNIIDWREMRVRAAMMLLRV 133
Query: 165 GLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQ 224
GL+ ++ ++ LS K+ + I+ ++ K++ +DEPTS L + Y+ + +L +
Sbjct: 134 GLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQL-R 192
Query: 225 RDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262
++G I I +E+ ++ ++ G +V G
Sbjct: 193 KEGTA---IVYISHKLAEIRRICDRYTVMKDGSSVCSG 227
|
Length = 510 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 8e-09
Identities = 47/177 (26%), Positives = 77/177 (43%), Gaps = 38/177 (21%)
Query: 73 AIMGPSGSGKTTLLDAL--AGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTL 130
A +GPSG GK+TLL L + R G+I ++G + + L
Sbjct: 55 AFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQN----------IYDKKVDVAEL 104
Query: 131 TVKEAVYYSAQLQLPDTMPKS---------------DKK---ERAEVTIREMGLQDAMNT 172
+ + + Q P+ PKS +++ E E ++R L D +
Sbjct: 105 RRRVGMVF----QRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKD 160
Query: 173 RIR----RLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQR 225
R+ LSGGQ++R+ I+ I P++L LDEPTS LD ++ + I +L +
Sbjct: 161 RLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSK 217
|
Length = 272 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 1e-08
Identities = 48/166 (28%), Positives = 78/166 (46%), Gaps = 42/166 (25%)
Query: 73 AIMGPSGSGKTTLLDALAGRLGSDT----RQTGKILINGHKKALAYGTSAYVTQDDTLIT 128
A++GPSGSGK+T L +L R+ +DT R TG+IL G + + I
Sbjct: 50 ALIGPSGSGKSTYLRSL-NRM-NDTIDIARVTGQILYRG------------IDINRKEIN 95
Query: 129 TLTVKEAVYYSAQLQLPDTMPKS---------------DKK---ERAEVTIREMGL---- 166
+++ + Q P+ KS DKK E E ++++ L
Sbjct: 96 VYEMRKHI--GMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQV 153
Query: 167 QDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAAS 212
+D ++ LSGGQ++R+ I+ I +P +L +DEP S LD ++
Sbjct: 154 KDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPIST 199
|
Length = 267 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 2e-08
Identities = 50/205 (24%), Positives = 89/205 (43%), Gaps = 44/205 (21%)
Query: 67 KPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGK------ILINGHKKALAYGTSAYV 120
+ G +L ++GP+G GK+T L LAG+L + + IL L Y
Sbjct: 24 REGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSEL----QNYF 79
Query: 121 TQDDTLITTLTVKEAVYYSAQLQLPDTMPKS------------DKKERAEVTIREMGLQD 168
T+ + VK V + Q D +PK+ D++ + + + ++ L+
Sbjct: 80 TK----LLEGDVKVIV----KPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRH 131
Query: 169 AMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGI 228
++ I +LSGG+ +RV+I+ + F DEP+S LD + QR
Sbjct: 132 VLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLD-------------IKQRLNA 178
Query: 229 GRTIIASIHQPSSEVFQLFHNLCLL 253
R +I + + + V + H+L +L
Sbjct: 179 AR-LIRELAEDDNYVLVVEHDLAVL 202
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (132), Expect = 2e-08
Identities = 44/174 (25%), Positives = 81/174 (46%), Gaps = 38/174 (21%)
Query: 73 AIMGPSGSGKTTLLDAL--AGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTL 130
A++GPSG GK+T L L L S+ + G++L++G + D + L
Sbjct: 34 ALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKN----------IYDKDVDVVEL 83
Query: 131 TVKEAVYYSAQLQLPDTMPKS---------------DKKERAEV---TIREMGLQDAMNT 172
+ + + Q P+ P S DKKE ++ +++ L D +
Sbjct: 84 RKRVGMVF----QKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKD 139
Query: 173 RIRR----LSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKL 222
+++ LSGGQ++R+ I+ I +P ++ +DEPTS LD ++ + + +L
Sbjct: 140 DLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVEL 193
|
Length = 251 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (132), Expect = 2e-08
Identities = 74/284 (26%), Positives = 117/284 (41%), Gaps = 27/284 (9%)
Query: 55 SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRL--GSDTRQTGKILINGHKKA- 111
+S L D+ K G A++G +GSGK+TLL L G L G I+++ K
Sbjct: 18 ASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQK 77
Query: 112 ----LAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGL- 166
+ ++ + TV + V + Q +PK ++ A + +GL
Sbjct: 78 EIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQ---NFGIPKEKAEKIAAEKLEMVGLA 134
Query: 167 QDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRD 226
+ LSGGQ RRV+I+ + P++L LDEPT+GLD A +M + Q
Sbjct: 135 DEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ-- 192
Query: 227 GIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG-PATAANE--FFAFNGFPCPTHQN 283
G+T++ H +V + LL G + G P+ E F + P +
Sbjct: 193 -SGQTVVLVTHL-MDDVADYADYVYLLEKGHIISCGTPSDVFQEVDFLKAHELGVPKATH 250
Query: 284 PSDHFLKTINKDFQKEAEEGLADGEIPTEEVINILKR-SYKSCG 326
+D KT F+K I E++ +L S S G
Sbjct: 251 FADQLQKTGAVTFEKLP--------ITRAELVTLLTSLSVNSGG 286
|
Length = 288 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 2e-08
Identities = 47/176 (26%), Positives = 82/176 (46%), Gaps = 26/176 (14%)
Query: 69 GHLLAIMGPSGSGKTTLLDALAGRLGSDTRQT-GKILING---HKKALAYGTSAYVTQD- 123
G +LA++G SGSGK+ A G L + RQT G++L++G AL A + Q+
Sbjct: 29 GRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNP 88
Query: 124 ----DTLITTLT-VKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRL- 177
+ L T T +E + T+ + + +GL++A R+ +L
Sbjct: 89 RSAFNPLHTMHTHARETCLALGKPADDATLTAA---------LEAVGLENA--ARVLKLY 137
Query: 178 ----SGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIG 229
SGG +R+ I++ +L + DEPT+ LD A ++ + + Q+ +G
Sbjct: 138 PFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALG 193
|
Length = 254 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 2e-08
Identities = 60/230 (26%), Positives = 104/230 (45%), Gaps = 52/230 (22%)
Query: 67 KPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQT-GKILINGHKKALAYGTSAYVTQDDT 125
G + ++G SG+GK+TL+ L R T G++L++G QD
Sbjct: 29 PAGEIFGVIGASGAGKSTLI-RCINLL---ERPTSGRVLVDG--------------QD-- 68
Query: 126 LITTLTVKE---------------------AVYYSAQLQLP-DTMPKSDKKERAEVTIRE 163
+T L+ KE V+ + L L PK++ K R +
Sbjct: 69 -LTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLEL 127
Query: 164 MGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLG 223
+GL D + +LSGGQK+RV+I+ + + PK+L DE TS LD A + ++ + +
Sbjct: 128 VGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDIN 187
Query: 224 QRDGIGRTIIASIHQPSSEVF-QLFHNLCLLSAGQTVYFGPATAANEFFA 272
+ G+ TI+ H+ +V ++ + ++ AG+ V G + E F+
Sbjct: 188 RELGL--TIVLITHE--MDVVKRICDRVAVIDAGRLVEQGTVS---EVFS 230
|
Length = 343 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (132), Expect = 2e-08
Identities = 50/206 (24%), Positives = 87/206 (42%), Gaps = 42/206 (20%)
Query: 56 SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDAL--AGRLGSDTRQTGKILINGHKKALA 113
+ IL+++ + A++GPSG GK+T + L L R G I ++G
Sbjct: 16 AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVD---- 71
Query: 114 YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKS-----------------DK-KE 155
+ + L K + + Q P+ PKS D +E
Sbjct: 72 ------IYDPAVDVVELRKKVGMVF----QKPNPFPKSIFDNVAYGLRIHGEDDEDFIEE 121
Query: 156 RAEVTIREMGLQDAMNTRIRR----LSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAA 211
R E +++ L D + ++ + LSGGQ++R+ I+ I P+++ +DEP S LD +
Sbjct: 122 RVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPIS 181
Query: 212 SYYVMSRIAKLGQRDGIGRTIIASIH 237
+ + I KL + TI+ H
Sbjct: 182 TTKIEDLIHKLKED----YTIVIVTH 203
|
Length = 250 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 53.4 bits (128), Expect = 3e-08
Identities = 48/185 (25%), Positives = 83/185 (44%), Gaps = 18/185 (9%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH---KKALAY 114
+L+ ++ + G LL + G +G+GKTTLL +AG L + G+IL K Y
Sbjct: 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNP---EKGEILFERQSIKKDLCTY 72
Query: 115 GTS-AYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTR 173
+V + LT++E Y D E+ R L+ ++
Sbjct: 73 QKQLCFVGHRSGINPYLTLRENCLY-------DIHFSPGAVGITEL-CRLFSLEHLIDYP 124
Query: 174 IRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTII 233
LS GQKR+V++ +++ KL LDEP LD + ++++I + + G ++
Sbjct: 125 CGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGG---AVL 181
Query: 234 ASIHQ 238
+ HQ
Sbjct: 182 LTSHQ 186
|
Length = 200 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 3e-08
Identities = 49/193 (25%), Positives = 80/193 (41%), Gaps = 36/193 (18%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDAL--AGRLGSDTRQTGKILINGHKKA 111
G L+D++ + A++GPSG GK+T L + L R G++ G
Sbjct: 50 GDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKN-- 107
Query: 112 LAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKS----------------DKKE 155
V D L + + + Q P+ PKS D E
Sbjct: 108 --------VYDADVDPVALRRRIGMVF----QKPNPFPKSIYDNVAYGLKIQGYDGDIDE 155
Query: 156 RAEVTIREMGLQDAMNTRIRR----LSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAA 211
R E ++R L D + ++ LSGGQ++R+ I+ I P+++ +DEP S LD A
Sbjct: 156 RVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVA 215
Query: 212 SYYVMSRIAKLGQ 224
+ + I +L +
Sbjct: 216 TSKIEDLIEELAE 228
|
Length = 285 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 3e-08
Identities = 33/141 (23%), Positives = 60/141 (42%), Gaps = 17/141 (12%)
Query: 69 GHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLIT 128
++ I+GP+G GKTT + LAG L D L T +Y Q
Sbjct: 25 SEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD----------TVSYKPQYIKADY 74
Query: 129 TLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSIS 188
TV++ + + K++ + + ++ ++ + LSGG+ +RV+I+
Sbjct: 75 EGTVRDLLSSITKDFYTHPYFKTE-------IAKPLQIEQILDREVPELSGGELQRVAIA 127
Query: 189 IEILTRPKLLFLDEPTSGLDS 209
+ + LDEP++ LD
Sbjct: 128 ACLSKDADIYLLDEPSAYLDV 148
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 4e-08
Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 32/153 (20%)
Query: 68 PGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLI 127
G L+AI+G +G GKT+L+ A+ G L R ++I G T AYV Q + I
Sbjct: 642 VGSLVAIVGSTGEGKTSLISAMLGEL--PPRSDASVVIRG--------TVAYVPQV-SWI 690
Query: 128 TTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMN-------TRIRR---- 176
TV++ + + + ++ ERA I LQ ++ T I
Sbjct: 691 FNATVRDNILFGSPFD-------PERYERA---IDVTALQHDLDLLPGGDLTEIGERGVN 740
Query: 177 LSGGQKRRVSISIEILTRPKLLFLDEPTSGLDS 209
+SGGQK+RVS++ + + + D+P S LD+
Sbjct: 741 ISGGQKQRVSMARAVYSNSDVYIFDDPLSALDA 773
|
Length = 1622 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (129), Expect = 4e-08
Identities = 59/229 (25%), Positives = 98/229 (42%), Gaps = 24/229 (10%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDAL--AGRLGSDTRQTGKILINGHKKA 111
+S +E ++ + AI+GPSG GK+T + L L + G + G
Sbjct: 18 NTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQN-- 75
Query: 112 LAYGTSAYVTQDDTLITT---------LTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIR 162
Y + + I +++ E V Y +++ +P++D E E ++
Sbjct: 76 -IYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYG--VRISAKLPQADLDEIVESALK 132
Query: 163 EMGL----QDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSR 218
L +D +N LSGGQ++R+ I+ + +PK+L +DEP S LD A+ V
Sbjct: 133 GAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEEL 192
Query: 219 IAKLGQRDGIGRTIIASIHQPSSEV--FQLFHNLCLLSAGQTVYFGPAT 265
I L R + I+ Q ++ V F F + GQ V FG T
Sbjct: 193 IHSL--RSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTT 239
|
Length = 259 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 5e-08
Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Query: 176 RLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIAS 235
+LSGG+++RV I++ +LTRP+LL DEPT+ LD + ++ + +L Q +G I
Sbjct: 156 QLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFIT- 214
Query: 236 IHQPSSEVFQLFHNLCLLSAGQTV 259
H S V +L + ++ G+ V
Sbjct: 215 -HNLSI-VRKLADRVAVMQNGRCV 236
|
Length = 529 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 5e-08
Identities = 50/197 (25%), Positives = 83/197 (42%), Gaps = 36/197 (18%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH---KKALAY 114
+L++++ KPG + I+G +GSGK++LL AL RL + G ILI+G K L
Sbjct: 19 VLKNISFSIKPGEKVGIVGRTGSGKSSLLLALF-RLVELSS--GSILIDGVDISKIGLHD 75
Query: 115 GTSAY--VTQDDTLITTLTVKE-----AVYYSAQL-------QLPDTMPKSDKKERAEVT 160
S + QD L + T++ Y +L L + + V
Sbjct: 76 LRSRISIIPQDPVLFSG-TIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVE 134
Query: 161 IREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIA 220
E G LS GQ++ + ++ +L + K+L LDE T+ +D + I
Sbjct: 135 --EGGEN---------LSVGQRQLLCLARALLRKSKILVLDEATASVDPET----DALIQ 179
Query: 221 KLGQRDGIGRTIIASIH 237
K + T++ H
Sbjct: 180 KTIREAFKDCTVLTIAH 196
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 5e-08
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 11/80 (13%)
Query: 168 DAMN-------TRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIA 220
D+M T+I LSGG +++V I +LT+P++L LDEPT G+D A + + IA
Sbjct: 376 DSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIA 435
Query: 221 KLGQRD-GIGRTIIASIHQP 239
+L ++D GI II S P
Sbjct: 436 ELAKKDKGI---IIISSEMP 452
|
Length = 491 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 6e-08
Identities = 44/175 (25%), Positives = 78/175 (44%), Gaps = 14/175 (8%)
Query: 69 GHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKIL-----INGHKKALAYGTSAYVTQD 123
G +I+G +GSGK+T+ + +G + ++G+I I V Q+
Sbjct: 35 GQWTSIVGHNGSGKSTIAKLM---IGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQN 91
Query: 124 -DTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQK 182
D VK V + + +P + R ++++ + + + LSGGQK
Sbjct: 92 PDNQFVGSIVKYDVAFGLENHA---VPYDEMHRRVSEALKQVDMLERADYEPNALSGGQK 148
Query: 183 RRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIH 237
+RV+I+ + P ++ LDE TS LD A ++ + K+ I TII+ H
Sbjct: 149 QRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNI--TIISITH 201
|
Length = 269 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 7e-08
Identities = 50/187 (26%), Positives = 86/187 (45%), Gaps = 24/187 (12%)
Query: 67 KPGHLLAIMGPSGSGKTTLLDALAG-----------RLGSDTRQTGKILINGHKKALAYG 115
K G + I+G SG+GKTTL +AG R+G + K +G +A Y
Sbjct: 308 KEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRY- 366
Query: 116 TSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRI- 174
+ Q+ L TV + + + L+LPD + + +A +T++ +G + I
Sbjct: 367 -IGILHQEYDLYPHRTVLDNLTEAIGLELPDEL----ARMKAVITLKMVGFDEEKAEEIL 421
Query: 175 ----RRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGR 230
LS G++ RV+++ ++ P+++ LDEPT +D V I K R+ + +
Sbjct: 422 DKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILK--AREEMEQ 479
Query: 231 TIIASIH 237
T I H
Sbjct: 480 TFIIVSH 486
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (127), Expect = 7e-08
Identities = 44/179 (24%), Positives = 78/179 (43%), Gaps = 38/179 (21%)
Query: 70 HLLAIMGPSGSGKTTLLDAL--AGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLI 127
+ AI+GPSG GK+TLL AL + S R G +L++ + + +
Sbjct: 31 QITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNEN----------IYSPNLDV 80
Query: 128 TTLTVKEAVYYSAQLQLPDTMPKS------------------DKKERAEVTIREMGLQDA 169
L + + + Q P+ PKS E E ++R+ L D
Sbjct: 81 VNLRKRVGMVF----QQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDE 136
Query: 170 MNTRIRR----LSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQ 224
+ + + LSGGQ++R+ I+ + P+++ +DEP S LD ++ + + +L Q
Sbjct: 137 VKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQ 195
|
Length = 251 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 9e-08
Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 36/162 (22%)
Query: 69 GHLLAIMGPSGSGKTTLLDAL--AGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTL 126
G + A++GPSG GK+T+L +L L G++L +G T Y D
Sbjct: 39 GKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDG--------TDLY----DPR 86
Query: 127 ITTLTVKEAVYYSAQLQLPDTMPKS----------------DKKERAEVTIREMGL---- 166
+ + V+ + Q P+ PKS D E E ++R+ +
Sbjct: 87 VDPVEVRRRI--GMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDEC 144
Query: 167 QDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208
+D +N LSGGQ++R+ I+ I P+++ +DEP S LD
Sbjct: 145 KDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALD 186
|
Length = 269 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (127), Expect = 9e-08
Identities = 55/205 (26%), Positives = 91/205 (44%), Gaps = 44/205 (21%)
Query: 71 LLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQD--DTLIT 128
++A +GPSG GK+TLL R+ LI G K G Y ++ D+ I
Sbjct: 48 IIAFIGPSGCGKSTLLRCF-NRMND--------LIPGAK---VEGRLLYRDRNIYDSQIN 95
Query: 129 TLTVKEAVYYSAQLQLPDTMPKS----------------DKKERAEVTIREMGLQDAMNT 172
++ ++ V Q P+ PKS + E E ++R + + +
Sbjct: 96 SVKLRRQV--GMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKD 153
Query: 173 RIRR----LSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGI 228
+++ LSGGQ++R+ I+ I +P +L +DEP S LD ++ V +L ++
Sbjct: 154 KLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQ--- 210
Query: 229 GRTIIASIH--QPSSEV--FQLFHN 249
TII H Q +S V + F N
Sbjct: 211 -YTIIMVTHNMQQASRVADWTAFFN 234
|
Length = 274 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 9e-08
Identities = 48/193 (24%), Positives = 85/193 (44%), Gaps = 17/193 (8%)
Query: 57 SILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILIN---------G 107
+ L ++ G L I+G G GK++LL A+ LG GK+ +
Sbjct: 15 ATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAI---LGEMQTLEGKVHWSNKNESEPSFE 71
Query: 108 HKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDK-KERAEVTIREMGL 166
++ + AY Q L+ TV+E + + + +D + ++ + G
Sbjct: 72 ATRSRNRYSVAYAAQKPWLLNA-TVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGD 130
Query: 167 QDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSR-IAKLGQR 225
Q + R LSGGQ++R+ ++ + ++FLD+P S LD S ++M I K Q
Sbjct: 131 QTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQD 190
Query: 226 DGIGRTIIASIHQ 238
D RT++ H+
Sbjct: 191 D--KRTLVLVTHK 201
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 1e-07
Identities = 52/196 (26%), Positives = 85/196 (43%), Gaps = 37/196 (18%)
Query: 18 ESSNKTANSLINVNEDDGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGP 77
+ K N DDG+F + L VT V L++++ + G LLA+ G
Sbjct: 417 NKARKQPNG------DDGLFFSNFSLYVTPV----------LKNISFKLEKGQLLAVAGS 460
Query: 78 SGSGKTTLLDALAGRL---GSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKE 134
+GSGK++LL + G L + +G+I + + GT D +I L+ E
Sbjct: 461 TGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIK-----DNIIFGLSYDE 515
Query: 135 AVYYSA--QLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEIL 192
Y S QL + + +K++ + E G+ LSGGQ+ R+S++ +
Sbjct: 516 YRYTSVIKACQLEEDIALFPEKDK--TVLGEGGIT---------LSGGQRARISLARAVY 564
Query: 193 TRPKLLFLDEPTSGLD 208
L LD P + LD
Sbjct: 565 KDADLYLLDSPFTHLD 580
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 1e-07
Identities = 50/193 (25%), Positives = 79/193 (40%), Gaps = 38/193 (19%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDAL--AGRLGSDTRQTGKILINGHKKA 111
G L D+T + A++GPSG GK+TLL L R TG IL NG
Sbjct: 17 GEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGEN-- 74
Query: 112 LAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKS---------------DKKER 156
D+ + ++ + Q P+ PKS +KK
Sbjct: 75 ----------IMDSGADVVALRRKI--GMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTL 122
Query: 157 AEV---TIREMGLQDAMNTRIRR----LSGGQKRRVSISIEILTRPKLLFLDEPTSGLDS 209
+ +++ L D + R+ LSGGQ++R+ I+ + P+++ +DEP S LD
Sbjct: 123 DTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDP 182
Query: 210 AASYYVMSRIAKL 222
A+ + I L
Sbjct: 183 IATAKIEDLIEDL 195
|
Length = 253 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 1e-07
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 357 TQCHVLTRRSFVNMYRDLGY-YWFRLAIYISMALGLATLFSNLGTGYRSIQARGSLLMFV 415
TQ L +R F+ +RD +RL + MAL T+F NL T R LL F
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNLDTS-LGGLNRPGLLFFS 59
Query: 416 ASFITFMTIGGF-PSFVEDM 434
F F ++ G P F+ +
Sbjct: 60 ILFNAFSSLTGISPVFIRER 79
|
Length = 210 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 1e-07
Identities = 58/208 (27%), Positives = 91/208 (43%), Gaps = 32/208 (15%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRL-----GSDTRQTGKILINGHKKA- 111
IL DL+ +PG + A++G +G+GK+TLL ALAG L R TG + +NG A
Sbjct: 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAA 75
Query: 112 -----LAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKER-AEVTIREMG 165
LA A + Q + +E V + P R E+ + +
Sbjct: 76 IDAPRLAR-LRAVLPQAAQPAFAFSAREIVLLG---RYPHARRAGALTHRDGEIAWQALA 131
Query: 166 LQDAMNTRIRR----LSGGQKRRVSI---------SIEILTRPKLLFLDEPTSGLDSAAS 212
L A + R LSGG+ RV + P+ L LDEPT+ LD A
Sbjct: 132 LAGA-TALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQ 190
Query: 213 YYVMSRIAKLGQRDGIGRTIIASIHQPS 240
+ ++ + +L + +G ++A +H P+
Sbjct: 191 HRLLDTVRRLARDWNLG--VLAIVHDPN 216
|
Length = 272 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 1e-07
Identities = 47/184 (25%), Positives = 82/184 (44%), Gaps = 25/184 (13%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDAL--AGRLGSDTRQTGKILINGHKKA 111
G L++++ + A++GPSG GK+T + L L + R GK+ I G
Sbjct: 23 GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGED-- 80
Query: 112 LAYGTSAYVTQDDTLITT---------LTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIR 162
Y V + + +++ + V Y ++ + K D E +R
Sbjct: 81 -IYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGAN---KKDLDGVVENALR 136
Query: 163 EMGLQDAMNTRIRR----LSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSR 218
L D + R++ LSGGQ++R+ I+ + +PK++ DEPTS LD ++ +R
Sbjct: 137 SAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPIST----AR 192
Query: 219 IAKL 222
I L
Sbjct: 193 IEDL 196
|
Length = 258 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 1e-07
Identities = 49/173 (28%), Positives = 79/173 (45%), Gaps = 26/173 (15%)
Query: 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGS 95
+ + DLT + G S LE G G ++ I+GP+G GKTT LAG L
Sbjct: 339 TLVEYPDLTKKL------GDFS-LEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKP 391
Query: 96 DTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKE 155
D G++ + ++Y Y+ D TV E + S L + KS+
Sbjct: 392 D---EGEVDP---ELKISY-KPQYIKPD----YDGTV-EDLLRSITDDLGSSYYKSE--- 436
Query: 156 RAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208
I+ + L+ ++ ++ LSGG+ +RV+I+ + L LDEP++ LD
Sbjct: 437 ----IIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLD 485
|
Length = 590 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 2e-07
Identities = 60/212 (28%), Positives = 98/212 (46%), Gaps = 17/212 (8%)
Query: 68 PGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHK-KALAYGTSAYVTQDDTL 126
PG L+++G SGSGK+T AL + S Q G+I+ NG + L+ G + +D
Sbjct: 349 PGETLSLVGESGSGKSTTGRALLRLVES---QGGEIIFNGQRIDTLSPGKLQALRRDIQF 405
Query: 127 I-----TTLTVKEAVYYSAQ--LQLPDTMPKSDKKERAEVTIREMGLQDAMNTRI-RRLS 178
I +L ++ V S L++ +P R + +GL R S
Sbjct: 406 IFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFS 465
Query: 179 GGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRD-GIGRTIIASIH 237
GGQ++R+ I+ + PK++ DE S LD + +++ + L QRD GI I+
Sbjct: 466 GGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDL-QRDFGIAYLFIS--- 521
Query: 238 QPSSEVFQLFHNLCLLSAGQTVYFGPATAANE 269
+ V ++ H + ++ GQ V GP A E
Sbjct: 522 HDMAVVERISHRVAVMYLGQIVEIGPRRAVFE 553
|
Length = 623 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 2e-07
Identities = 57/206 (27%), Positives = 83/206 (40%), Gaps = 37/206 (17%)
Query: 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDT 97
L K+L ++ + IL+ L G + AIMGP+GSGK+TL +AG +
Sbjct: 8 LEIKNLHASV------NENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGH-PAYK 60
Query: 98 RQTGKILING--------HKKA-----LAYG---TSAYVTQDDTLITTLTVKEAVYYSAQ 141
G IL G ++A LA+ V+ D L Y S +
Sbjct: 61 ILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFL-------RLAYNSKR 113
Query: 142 LQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRR-----LSGGQKRRVSISIEILTRPK 196
+P+ D E E+ ++ L + + R SGG+K+R I L +
Sbjct: 114 KFQ--GLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSE 171
Query: 197 LLFLDEPTSGLDSAASYYVMSRIAKL 222
L LDE SGLD A + I KL
Sbjct: 172 LAILDETDSGLDIDALKIIAEGINKL 197
|
Length = 252 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (123), Expect = 2e-07
Identities = 57/234 (24%), Positives = 95/234 (40%), Gaps = 43/234 (18%)
Query: 71 LLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHK---KALAYGTSAYVTQDDTLI 127
+ A++GPSG GK+T L L R+ L+ G K + G + Y D L
Sbjct: 35 ITALIGPSGCGKSTFLRTL-NRMND--------LVEGIKIEGNVIYEGKNIYSNNFDILE 85
Query: 128 TT--------------LTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGL----QDA 169
+++ + + Y ++ T K E E ++++ L +D
Sbjct: 86 LRRKIGMVFQTPNPFLMSIYDNISYGPKIH--GTKDKKKLDEIVEQSLKKSALWNEVKDK 143
Query: 170 MNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIG 229
+NT LSGGQ++R+ I+ + P ++ +DEPTS LD ++ + I L +
Sbjct: 144 LNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE----S 199
Query: 230 RTIIASIHQPS-----SEVFQLFHNLCLLSAGQT--VYFGPATAANEFFAFNGF 276
TII H S+ F N C+ T ++F P E + F
Sbjct: 200 YTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFFNPKNTKTEEYISGKF 253
|
Length = 254 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 2e-07
Identities = 49/143 (34%), Positives = 80/143 (55%), Gaps = 9/143 (6%)
Query: 69 GHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING---HKKALAYGTSAYVTQDDT 125
G + ++GPSG GK+TLL +AG L T +G+I I G ++ A A V Q+
Sbjct: 30 GEFIVLVGPSGCGKSTLLRMVAG-LERIT--SGEIWIGGRVVNELEPADRDIAMVFQNYA 86
Query: 126 LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRV 185
L ++V+E + Y +++ MPK++ +ER R + L+ ++ + R LSGGQ++RV
Sbjct: 87 LYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRV 143
Query: 186 SISIEILTRPKLLFLDEPTSGLD 208
++ I+ P + DEP S LD
Sbjct: 144 AMGRAIVREPAVFLFDEPLSNLD 166
|
Length = 356 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 2e-07
Identities = 54/174 (31%), Positives = 76/174 (43%), Gaps = 42/174 (24%)
Query: 48 VSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING 107
VS G G IL+ + PG + ++G +G+GK+TL+ LAG L +G+I G
Sbjct: 318 VSAGY-GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAP---VSGEI---G 370
Query: 108 HKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQL----PDTMPKSDKKERA----EV 159
K + G Y AQ QL D P A E
Sbjct: 371 LAKGIKLG----------------------YFAQHQLEFLRADESPLQHLARLAPQELEQ 408
Query: 160 TIRE----MGLQ-DAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208
+R+ G Q D + RR SGG+K R+ +++ + RP LL LDEPT+ LD
Sbjct: 409 KLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLD 462
|
Length = 638 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 3e-07
Identities = 50/201 (24%), Positives = 92/201 (45%), Gaps = 38/201 (18%)
Query: 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDT 97
+ + LT G+ ++L+DL+ + G + ++G +GSGK+TLL AL L ++
Sbjct: 1218 MDVQGLTAKYTEAGR----AVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTE- 1272
Query: 98 RQTGKILING--------HKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMP 149
G+I I+G A+G V I + T ++ + Q
Sbjct: 1273 ---GEIQIDGVSWNSVTLQTWRKAFG----VIPQKVFIFSGTFRKNLDPYEQW------- 1318
Query: 150 KSDK---KERAEVTIREMGLQ--DAMNTRIRR----LSGGQKRRVSISIEILTRPKLLFL 200
SD+ K EV ++ + Q D ++ + LS G K+ + ++ IL++ K+L L
Sbjct: 1319 -SDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLL 1377
Query: 201 DEPTSGLDSAASYYVMSRIAK 221
DEP++ LD + ++ + K
Sbjct: 1378 DEPSAHLD-PVTLQIIRKTLK 1397
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 3e-07
Identities = 43/178 (24%), Positives = 83/178 (46%), Gaps = 36/178 (20%)
Query: 41 KDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTL-------LDALAGRL 93
++L+V + +L++++ K G + I+G +G+GK+TL L+A G++
Sbjct: 10 ENLSVRYAPD----LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKI 65
Query: 94 GSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPK-SD 152
D I + + +L + QD TL + T++ + D + SD
Sbjct: 66 EIDGIDISTIPLEDLRSSLTI-----IPQDPTLFSG-TIRSNL---------DPFDEYSD 110
Query: 153 KKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSA 210
++ + + E GL LS GQ++ + ++ +L RP++L LDE T+ +D A
Sbjct: 111 EEIYGALRVSEGGLN---------LSQGQRQLLCLARALLKRPRVLVLDEATASIDYA 159
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 3e-07
Identities = 56/245 (22%), Positives = 98/245 (40%), Gaps = 43/245 (17%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDAL--AGRLGSDTRQTGKILINGHKKA 111
G L+++ + A++GPSG GK+T L L G+I++
Sbjct: 27 GGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIIL------ 80
Query: 112 LAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKK----------------- 154
+ + + + + + V+ + S Q P+ PKS +
Sbjct: 81 --HPDNVNILSPE--VDPIEVRMRI--SMVFQKPNPFPKSIFENVAYGLRIRGVKRRSIL 134
Query: 155 -ERAEVTIREMGLQDAMNTRIRRL----SGGQKRRVSISIEILTRPKLLFLDEPTSGLDS 209
ER E +R L D + R+ L SGGQ++R+ I+ + T P++L DEPTS LD
Sbjct: 135 EERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDP 194
Query: 210 AASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEV-----FQLFHNLCLLSAGQTVYFGPA 264
A+ + I+ L ++ + I+ Q ++ V + L A T++ P
Sbjct: 195 IATASIEELISDL--KNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTIFIKPK 252
Query: 265 TAANE 269
E
Sbjct: 253 NKQTE 257
|
Length = 265 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 3e-07
Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 175 RRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIA 234
+ LSGGQK+R++I+ +L PK+L LDE TS LDS + + I + +D +TII
Sbjct: 1357 KSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDI--KDKADKTIIT 1414
Query: 235 SIHQPSS 241
H+ +S
Sbjct: 1415 IAHRIAS 1421
|
Length = 1466 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 4e-07
Identities = 27/59 (45%), Positives = 36/59 (61%)
Query: 176 RLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIA 234
+LSGGQK+R+SI+ I+ PK+L LDE TS LD+ + Y V I L + IIA
Sbjct: 579 KLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIA 637
|
Length = 1466 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 4e-07
Identities = 43/164 (26%), Positives = 73/164 (44%), Gaps = 32/164 (19%)
Query: 69 GHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQD--DTL 126
+ +GPSG GK+T+L +L R+ L+ G + G ++ QD
Sbjct: 34 NEITGFIGPSGCGKSTVLRSL-NRMND--------LVKGFRFE---GHVHFLGQDVYGKG 81
Query: 127 ITTLTVKEAVYYSAQLQLPDTMP--------------KSDKKERAEVTIREMGLQDAMNT 172
+ + V+ + Q P +M K D +R + ++ L D +
Sbjct: 82 VDPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD 141
Query: 173 RIR----RLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAAS 212
+++ LSGGQ++R+ I+ I T P++L LDEP S LD A+
Sbjct: 142 KLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIAT 185
|
Length = 261 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (122), Expect = 4e-07
Identities = 49/184 (26%), Positives = 83/184 (45%), Gaps = 10/184 (5%)
Query: 55 SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDAL--AGRLGSDTRQTGKILING-HKKA 111
+ +L DL K + A +GPSG GK+T L L L T G+I G + ++
Sbjct: 94 TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRS 153
Query: 112 LAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKK---ERAEVTIREMGLQD 168
+ T+ + T E + P +D+K + E +++ L D
Sbjct: 154 KKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWD 213
Query: 169 AMNTRIRR----LSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQ 224
+ + + LSGGQ++R+ I+ I P++L +DEPTS LD A+ + I +L +
Sbjct: 214 EVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK 273
Query: 225 RDGI 228
+ I
Sbjct: 274 KYSI 277
|
Length = 329 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 4e-07
Identities = 55/227 (24%), Positives = 106/227 (46%), Gaps = 25/227 (11%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQT-GKILINGHKKAL 112
G L +++ + G ++ ++G +G+GKTTLL L G D R T G+I+ +G K +
Sbjct: 16 GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCG----DPRATSGRIVFDG--KDI 69
Query: 113 AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPK----SDKKERAEVTIREMGL-- 166
+A + ++ I V E +++ + + + +++ + E L
Sbjct: 70 TDWQTAKIMREAVAI----VPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFP 125
Query: 167 --QDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQ 224
+ R +SGG+++ ++I ++++P+LL LDEP+ GL + I +L +
Sbjct: 126 RLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE 185
Query: 225 RDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY--FGPATAANE 269
+ G TI + Q +++ +L +L G V G A ANE
Sbjct: 186 Q---GMTIFL-VEQNANQALKLADRGYVLENGHVVLEDTGDALLANE 228
|
Length = 237 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 6e-07
Identities = 56/203 (27%), Positives = 91/203 (44%), Gaps = 21/203 (10%)
Query: 67 KPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH-------KKALAYGTSAY 119
+P + A+MG +G+GK+TLL L G D +G IL G K+AL G S
Sbjct: 22 RPHSIHALMGENGAGKSTLLKCLFGIYQKD---SGSILFQGKEIDFKSSKEALENGISM- 77
Query: 120 VTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIR---EMGLQDAMNTRIRR 176
V Q+ L+ +V + ++ + P D+ + T E+ + ++
Sbjct: 78 VHQELNLVLQRSVMDNMWLG---RYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVAT 134
Query: 177 LSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASI 236
LS Q + + I+ K++ +DEPTS L ++ + I KL +R G G I I
Sbjct: 135 LSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKER-GCG---IVYI 190
Query: 237 HQPSSEVFQLFHNLCLLSAGQTV 259
E+FQL + +L GQ +
Sbjct: 191 SHKMEEIFQLCDEITILRDGQWI 213
|
Length = 491 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 6e-07
Identities = 53/194 (27%), Positives = 90/194 (46%), Gaps = 29/194 (14%)
Query: 53 KGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL 112
K S L D+ G L+AI+G +G GKT+L+ A+ G L +T ++I G
Sbjct: 627 KTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSH--AETSSVVIRG----- 679
Query: 113 AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERA-EVTIREMGLQ---- 167
+ AYV Q + I TV+E + + + + S++ RA +VT + L
Sbjct: 680 ---SVAYVPQV-SWIFNATVRENILFGSDFE-------SERYWRAIDVTALQHDLDLLPG 728
Query: 168 ---DAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQ 224
+ R +SGGQK+RVS++ + + + D+P S LD+ ++ V K
Sbjct: 729 RDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDEL 788
Query: 225 RDGIGRTIIASIHQ 238
+ G+T + +Q
Sbjct: 789 K---GKTRVLVTNQ 799
|
Length = 1495 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 6e-07
Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 17/68 (25%)
Query: 68 PGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLI 127
PG +L I+G SGSGKTTLL+AL+ RL D G Y +D L
Sbjct: 31 PGEVLGIVGESGSGKTTLLNALSARLAPDA-----------------GEVHYRMRDGQLR 73
Query: 128 TTLTVKEA 135
+ EA
Sbjct: 74 DLYALSEA 81
|
Length = 258 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 9e-07
Identities = 45/157 (28%), Positives = 69/157 (43%), Gaps = 26/157 (16%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTS 117
+ ++L + G LAI+G +G GKTTLL L G L D+ G K
Sbjct: 334 LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDS---------GTVKWSENANI 384
Query: 118 AYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGL------QDAMN 171
Y QD A + L L D M + ++ E +R L QD +
Sbjct: 385 GYYAQD----------HAYDFENDLTLFDWMSQWRQEGDDEQAVRGT-LGRLLFSQDDIK 433
Query: 172 TRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208
++ LSGG+K R+ ++ +P +L +DEPT+ +D
Sbjct: 434 KSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMD 470
|
Length = 530 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 1e-06
Identities = 39/155 (25%), Positives = 75/155 (48%), Gaps = 20/155 (12%)
Query: 67 KPGHLLAIMGPSGSGKTTLLDALAGRLGS--DTRQTGKILINGHKKALAYGTSAYVTQDD 124
+ G LA++G SG GK+TL RL + +T G++ G A + + +
Sbjct: 39 ERGKTLAVVGESGCGKSTL-----ARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQK 93
Query: 125 TLIT------TLTVKEAVYYSAQLQLP----DTMPKSDKKERAEVTIREMGLQDAMNTRI 174
I +L ++ V L+ P ++ ++++E+A + ++GL+ R
Sbjct: 94 IQIVFQNPYGSLNPRKKV--GQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRY 151
Query: 175 RRL-SGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208
+ SGGQ++R++I+ ++ P ++ DEP S LD
Sbjct: 152 PHMFSGGQRQRIAIARALMLDPDVVVADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 2e-06
Identities = 48/188 (25%), Positives = 92/188 (48%), Gaps = 18/188 (9%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTS 117
L++++ G +AI+G +GSGK+T+ L G L Q+G+I I+G ++
Sbjct: 24 ALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKP---QSGEIKIDG--ITISKENL 78
Query: 118 AY-------VTQD-DTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDA 169
+ Q+ D TV++ + + + + PK K ++ +++G++D
Sbjct: 79 KEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVP--PKKMKDIIDDLA-KKVGMEDY 135
Query: 170 MNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIG 229
++ + LSGGQK+RV+I+ + P+++ DE TS LD + + L R
Sbjct: 136 LDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDL--RKTRK 193
Query: 230 RTIIASIH 237
+T+I+ H
Sbjct: 194 KTLISITH 201
|
Length = 271 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 47.0 bits (111), Expect = 2e-06
Identities = 38/176 (21%), Positives = 61/176 (34%), Gaps = 52/176 (29%)
Query: 68 PGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLI 127
PG ++ I+GP GSGKTTL ALA LG G I I+G
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGG--GVIYIDG-------------------- 38
Query: 128 TTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSI 187
E + + L + + SG + R+++
Sbjct: 39 ---------------------------EDILEEVLDQLLLIIVGGKKASGSGELRLRLAL 71
Query: 188 SIEILTRPKLLFLDEPTSGLDSAASYYVMSRI---AKLGQRDGIGRTIIASIHQPS 240
++ +P +L LDE TS LD+ ++ L + T+I + +
Sbjct: 72 ALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEK 127
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 3e-06
Identities = 48/186 (25%), Positives = 84/186 (45%), Gaps = 28/186 (15%)
Query: 59 LEDLTGYA--------KPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH-- 108
+EDLTG + G +L + G G+G+T L + L G + G+I++NG
Sbjct: 271 VEDLTGEGFRNISLEVRAGEILGLAGVVGAGRTELAETL---YGLRPARGGRIMLNGKEI 327
Query: 109 -----KKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMP--KSDKKERA--EV 159
+ LA G Y+ +D + L + + ++ + +E A E
Sbjct: 328 NALSTAQRLARGL-VYLPEDRQ-SSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLER 385
Query: 160 TIREMGLQ-DAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAAS---YYV 215
R + ++ + R LSGG +++V I+ + P+LL +DEPT G+D +A Y +
Sbjct: 386 YRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQL 445
Query: 216 MSRIAK 221
+ IA
Sbjct: 446 IRSIAA 451
|
Length = 510 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 3e-06
Identities = 52/238 (21%), Positives = 97/238 (40%), Gaps = 45/238 (18%)
Query: 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDT 97
+ K+LT +GK+ +L++++ + G +L I+G SG+GK+ L+ L G +
Sbjct: 1 IEVKNLTKKF--DGKE----VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRG-MDQYE 53
Query: 98 RQTGKILIN----------------GHKKALAYGTSA-----YVTQDDTLITTLTVKEAV 136
+G+I+ + G + GT + D L + + A+
Sbjct: 54 PTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAI 113
Query: 137 Y-------YSAQLQLPDTM--------PKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQ 181
Y L + + + RA I + L + R LSGG+
Sbjct: 114 MLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGE 173
Query: 182 KRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQP 239
K+RV ++ ++ P L DEPT LD + V + + + + GI +++ + H P
Sbjct: 174 KQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGI--SMVLTSHWP 229
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 3e-06
Identities = 47/188 (25%), Positives = 79/188 (42%), Gaps = 50/188 (26%)
Query: 73 AIMGPSGSGKTTLLDAL--------AGRL-------GSDTRQTGKILINGHKKA------ 111
A++GPSG GK+T L L A R+ G D Q G L+ K+
Sbjct: 75 ALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQS 134
Query: 112 -----------LAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVT 160
++YG + + L+ L ++ K + E E +
Sbjct: 135 PNPFPKSIRENISYGPRKHGDINTGLLARLLGRD--------------DKDAEDELVERS 180
Query: 161 IREMGLQDAMNTRIRR----LSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVM 216
+R+ L D +N R+ LSGGQ++R+ I+ + P+++ +DEP S LD A+ +
Sbjct: 181 LRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIE 240
Query: 217 SRIAKLGQ 224
I +L +
Sbjct: 241 DLIEELAE 248
|
Length = 305 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 3e-06
Identities = 46/183 (25%), Positives = 79/183 (43%), Gaps = 31/183 (16%)
Query: 31 NEDDGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALA 90
++D+ +F + L V L+++ + G +LAI G +GSGKT+LL +
Sbjct: 35 SDDNNLFFSNLCLVGAPV----------LKNINLKIEKGEMLAITGSTGSGKTSLLMLIL 84
Query: 91 GRLGSDT---RQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSA--QLQLP 145
G L + +G+I + + GT + +I ++ E Y S QL
Sbjct: 85 GELEPSEGKIKHSGRISFSSQFSWIMPGTIK-----ENIIFGVSYDEYRYKSVVKACQLE 139
Query: 146 DTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTS 205
+ + K +K+ + E G+ LSGGQ+ R+S++ + L LD P
Sbjct: 140 EDITKFPEKDN--TVLGEGGIT---------LSGGQRARISLARAVYKDADLYLLDSPFG 188
Query: 206 GLD 208
LD
Sbjct: 189 YLD 191
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 4e-06
Identities = 57/216 (26%), Positives = 99/216 (45%), Gaps = 37/216 (17%)
Query: 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDT 97
+T KDLT G +++LE+++ PG + ++G +GSGK+TLL A L ++
Sbjct: 3 MTVKDLTAKYTEGG----NAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE- 57
Query: 98 RQTGKILING---HKKALAYGTSAY-VTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDK 153
G I I+G + L A+ V I + T ++ + D K
Sbjct: 58 ---GDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNL---------DPYGKWSD 105
Query: 154 KERAEVTIREMGLQDAMNTRIRR-----------LSGGQKRRVSISIEILTRPKLLFLDE 202
+E +V E+GL+ + + LS G K+ + ++ +L++ K+L LDE
Sbjct: 106 EEIWKVA-EEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDE 164
Query: 203 PTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQ 238
P++ LD +Y V+ + K D T+I S H+
Sbjct: 165 PSAHLD-PITYQVIRKTLKQAFADC---TVILSEHR 196
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50 | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 4e-06
Identities = 38/181 (20%), Positives = 66/181 (36%), Gaps = 44/181 (24%)
Query: 73 AIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTV 132
I+G +G+GKTT+++AL L + K D LI V
Sbjct: 26 LIVGQNGAGKTTIIEALKYALTGELPPNSK----------------GGAHDPKLIREGEV 69
Query: 133 KEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGL--------QDAMNT----RIRRLSGG 180
+ V L ++ ++ +T R + + Q N R SGG
Sbjct: 70 RAQVK----LAF-----ENANGKKYTIT-RSLAILENVIFCHQGESNWPLLDMRGRCSGG 119
Query: 181 QKRRVSISIEIL------TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIA 234
+K S+ I + + +L LDEPT+ LD ++ I + + + I+
Sbjct: 120 EKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVI 179
Query: 235 S 235
+
Sbjct: 180 T 180
|
The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 5e-06
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 175 RRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208
SGG ++R+ I+ ++T P+L+F+DEPT GLD
Sbjct: 150 TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLD 183
|
Length = 258 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 8e-06
Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 38/160 (23%)
Query: 73 AIMGPSGSGKTTLLDAL--AGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTL 130
A++GPSG GK+T L ++ L R G+IL G + D+ I +
Sbjct: 51 ALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEG------------LNILDSNINVV 98
Query: 131 TVKEAVYYSAQLQLPDTMPKS-------------DKK-----ERAEVTIREMGLQDAMNT 172
++ + Q P+ PKS +++ E E ++ + L D +
Sbjct: 99 NLRREI--GMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKD 156
Query: 173 RIRR----LSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208
R+ LSGGQ++R+ I+ + +P +L LDEP S LD
Sbjct: 157 RLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALD 196
|
Length = 268 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 9e-06
Identities = 52/193 (26%), Positives = 93/193 (48%), Gaps = 38/193 (19%)
Query: 68 PGHLLAIMGPSGSGKTTLLDALAGRLGSDTR----QTGKILINGHKKALAYGTS------ 117
G +A++G SGSGK+T+ + L TR G+IL++GH Y +
Sbjct: 368 AGKTVALVGRSGSGKSTIANLL-------TRFYDIDEGEILLDGHD-LRDYTLASLRNQV 419
Query: 118 AYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVT-----IREMGLQDAMNT 172
A V+Q+ L T+ + Y+ + + +E A + I +M + ++T
Sbjct: 420 ALVSQNVHLFND-TIANNIAYART----EQYSREQIEEAARMAYAMDFINKM--DNGLDT 472
Query: 173 RIRR----LSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGI 228
I LSGGQ++R++I+ +L +L LDE TS LD+ + + + + +L Q++
Sbjct: 473 VIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL-QKN-- 529
Query: 229 GRTIIASIHQPSS 241
RT + H+ S+
Sbjct: 530 -RTSLVIAHRLST 541
|
Length = 582 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 1e-05
Identities = 44/175 (25%), Positives = 76/175 (43%), Gaps = 52/175 (29%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA 113
G +++DL+ PG ++ ++GP+G+GK+TL + G+ + +G I I
Sbjct: 333 GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQ---EQPDSGTIKI-------- 381
Query: 114 YGTS---AYVTQD-DTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDA 169
G + AYV Q D L TV E + S + ++ RE
Sbjct: 382 -GETVKLAYVDQSRDALDPNKTVWEEI--------------SGGLDIIQLGKRE------ 420
Query: 170 MNTR----------------IRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208
+ +R + +LSGG++ RV ++ + + +L LDEPT+ LD
Sbjct: 421 VPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLD 475
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 1e-05
Identities = 51/201 (25%), Positives = 84/201 (41%), Gaps = 33/201 (16%)
Query: 59 LEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRL----GSDTRQTGKILINGHKKALAY 114
+ +L+ + G LAI+G SGSGK+ AL RL G + +L ++ +
Sbjct: 32 VRNLSFSLQRGETLAIVGESGSGKSVTALALM-RLLEQAGGLVQCDKMLLRRRSRQVIEL 90
Query: 115 GTS-------------AYVTQD--DTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEV 159
A + Q+ +L TV E + S +L + +E A V
Sbjct: 91 SEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLH------QGASREEAMV 144
Query: 160 TIREMGLQ------DAMNTRI-RRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAAS 212
+ M Q + +R +LSGG ++RV I++ + RP +L DEPT+ LD
Sbjct: 145 EAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQ 204
Query: 213 YYVMSRIAKLGQRDGIGRTII 233
++ I L + +G I
Sbjct: 205 AQILQLIKVLQKEMSMGVIFI 225
|
Length = 623 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 1e-05
Identities = 41/148 (27%), Positives = 70/148 (47%), Gaps = 9/148 (6%)
Query: 69 GHLLAIMGPSGSGKTTLLDALAGRL-GSDTRQT--GKILINGHKKALAYGTS--AYVTQD 123
G L ++G SG GK+T A+ G + +D GK L+ S + QD
Sbjct: 47 GETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQD 106
Query: 124 D--TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGL-QDAMNTRIRRLSGG 180
+L +T+ E + + P + + + K+R + + ++GL + +N SGG
Sbjct: 107 PLASLNPRMTIGEIIAEPLRTYHPK-LSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGG 165
Query: 181 QKRRVSISIEILTRPKLLFLDEPTSGLD 208
Q +R+ I+ ++ PKL+ DEP S LD
Sbjct: 166 QCQRIGIARALILEPKLIICDEPVSALD 193
|
Length = 331 |
| >gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 2e-05
Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 6/114 (5%)
Query: 153 KKERAEVTIREMGL---QDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDS 209
+K RA + +G+ +D M + L+ G+ ++V I+I + +P+LL DEPT+ ++
Sbjct: 132 RKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEP 191
Query: 210 AASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263
+ +++L Q T I I + Q + +L GQTV P
Sbjct: 192 TTQAQIFRLLSRLNQNSN---TTILLISHDLQMISQWADKINVLYCGQTVESAP 242
|
Length = 330 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 3e-05
Identities = 46/161 (28%), Positives = 72/161 (44%), Gaps = 32/161 (19%)
Query: 67 KPGHLLAIMGPSGSGKTTLLDALAGR----LGSDTRQT----------GKILINGHKKAL 112
K G + I+GP+G GKTT + L+G LG + G L N + K L
Sbjct: 97 KEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQN-YFKKL 155
Query: 113 AYG--TSAYVTQDDTLITTL---TVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ 167
G + Q LI + V+E + K D++ + + + +GL+
Sbjct: 156 YNGEIKVVHKPQYVDLIPKVFKGKVRELL------------KKVDERGKLDEVVERLGLE 203
Query: 168 DAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208
+ ++ I LSGG+ +RV+I+ +L F DEPTS LD
Sbjct: 204 NILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLD 244
|
Length = 590 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 3e-05
Identities = 43/183 (23%), Positives = 72/183 (39%), Gaps = 37/183 (20%)
Query: 52 KKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKIL------- 104
++G +L++ T PG + ++G +G GK+TLL L + +D G
Sbjct: 10 RRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADG---GSYTFPGNWQL 66
Query: 105 --INGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLP----------------D 146
+N AL YV D +E AQL D
Sbjct: 67 AWVNQETPALPQPALEYVIDGD--------REYRQLEAQLHDANERNDGHAIATIHGKLD 118
Query: 147 TMPKSDKKERAEVTIREMGL-QDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTS 205
+ + RA + +G + + + SGG + R++++ ++ R LL LDEPT+
Sbjct: 119 AIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTN 178
Query: 206 GLD 208
LD
Sbjct: 179 HLD 181
|
Length = 638 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 4e-05
Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 46/157 (29%)
Query: 69 GHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTS---AYVTQDDT 125
G +A++GP+G GKTTLL + G+L +D+ G+I GT AY Q
Sbjct: 345 GDKIALIGPNGCGKTTLLKLMLGQLQADS---GRIHC---------GTKLEVAYFDQ--- 389
Query: 126 LITTLTVKEAVYYSAQLQLPDTMPK--SDKKERAEVTIRE---MG-LQD-------AMNT 172
+ A+L T+ ++ K+ V R +G LQD AM T
Sbjct: 390 ------------HRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAM-T 436
Query: 173 RIRRLSGGQKRRVSISIEILTRP-KLLFLDEPTSGLD 208
++ LSGG++ R+ ++ + +P LL LDEPT+ LD
Sbjct: 437 PVKALSGGERNRLLLA-RLFLKPSNLLILDEPTNDLD 472
|
Length = 635 |
| >gnl|CDD|234988 PRK01889, PRK01889, GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 4e-05
Identities = 17/45 (37%), Positives = 29/45 (64%), Gaps = 3/45 (6%)
Query: 59 LEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKI 103
L+ L + G +A++G SG GK+TL++AL LG + ++TG +
Sbjct: 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNAL---LGEEVQKTGAV 226
|
Length = 356 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 4e-05
Identities = 46/173 (26%), Positives = 80/173 (46%), Gaps = 40/173 (23%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH------KKA 111
+L+++ +A++G +GSGK+TL L +G G+I ++G
Sbjct: 356 VLQNINLSVPSRGFVALVGHTGSGKSTLASLL---MGYYPLTEGEIRLDGRPLSSLSHSV 412
Query: 112 LAYGTSAYVTQD-----DTLITTLTV-----KEAVYYS-AQLQLPDTMPKSDKKERAEVT 160
L G A V QD DT + +T+ +E V+ + +QL AE+
Sbjct: 413 LRQGV-AMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQL------------AEL- 458
Query: 161 IREMGLQDAMNTRI----RRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDS 209
R L D + T + LS GQK+ ++++ ++ P++L LDE T+ +DS
Sbjct: 459 AR--SLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDS 509
|
Length = 592 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 5e-05
Identities = 35/166 (21%), Positives = 52/166 (31%), Gaps = 61/166 (36%)
Query: 68 PGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLI 127
G L I GP+GSGK+T+LDA+
Sbjct: 20 EGSLTIITGPNGSGKSTILDAIG------------------------------------- 42
Query: 128 TTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSI 187
+ T +S K V L +LSGG+K ++
Sbjct: 43 ----------LALGGAQSATRRRSGVKAGCIVAAVSAELI----FTRLQLSGGEKELSAL 88
Query: 188 SI-----EILTRPKLLFLDEPTSGLDS----AASYYVMSRIAKLGQ 224
++ + RP L LDE GLD A + ++ + K Q
Sbjct: 89 ALILALASLKPRP-LYILDEIDRGLDPRDGQALAEAILEHLVKGAQ 133
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|226232 COG3709, COG3709, Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 7e-05
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 68 PGHLLAIMGPSGSGKTTLLDALAGRLGSDTR 98
G L+A++GPSG+GK TLLDA RL R
Sbjct: 4 MGRLIAVVGPSGAGKDTLLDAARARLAGRPR 34
|
Length = 192 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 8e-05
Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 31/168 (18%)
Query: 73 AIMGPSGSGKTTLLDALAGRLG--SDTRQTG-------------KILINGHKKALAYGTS 117
A +G +GSGK+ L ALAG L S RQ+ K++ + ++ S
Sbjct: 33 AFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLS 92
Query: 118 AYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRL 177
+DDT TT A++ + R E ++ G+ ++ R + L
Sbjct: 93 P--GEDDTGRTT----------AEIIQDEV----KDPARCEQLAQQFGITALLDRRFKYL 136
Query: 178 SGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQR 225
S G+ R+ + +++ P LL LDEP GLD A+ + +A L Q
Sbjct: 137 STGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQS 184
|
Length = 490 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 1e-04
Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 21/153 (13%)
Query: 69 GHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLIT 128
G L ++G +GSGK+TLL +L L G++ A + AYV Q I
Sbjct: 686 GKLTVVLGATGSGKSTLLQSL---LSQFEISEGRVW--------AERSIAYVPQQ-AWIM 733
Query: 129 TLTVKEAVYY-----SAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKR 183
TV+ + + +A+L D + S + A++ GL+ + + LSGGQK
Sbjct: 734 NATVRGNILFFDEEDAARLA--DAVRVS--QLEADLAQLGGGLETEIGEKGVNLSGGQKA 789
Query: 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVM 216
RVS++ + + LD+P S LD+ V+
Sbjct: 790 RVSLARAVYANRDVYLLDDPLSALDAHVGERVV 822
|
Length = 1560 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 1e-04
Identities = 50/204 (24%), Positives = 87/204 (42%), Gaps = 27/204 (13%)
Query: 74 IMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVK 133
++G +GSGK+T++ G + S+T QT I G Y A + + +
Sbjct: 42 VIGTTGSGKSTMIQLTNGLIISETGQT----IVGD-----YAIPANLKKIKEVKRLRKEI 92
Query: 134 EAVYYSAQLQL-PDTMPK----------SDKKERAEVTIREMGLQDAMNTRIRR----LS 178
V+ + QL +T+ K +K+E + + L ++R LS
Sbjct: 93 GLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELS 152
Query: 179 GGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQ 238
GGQKRRV+++ I L LDEPT GLD ++ +L + + II H
Sbjct: 153 GGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEY--KKRIIMVTHN 210
Query: 239 PSSEVFQLFHNLCLLSAGQTVYFG 262
+V ++ + ++ G+ + G
Sbjct: 211 -MDQVLRIADEVIVMHEGKVISIG 233
|
Length = 289 |
| >gnl|CDD|222036 pfam13304, AAA_21, AAA domain | Back alignment and domain information |
|---|
Score = 42.8 bits (100), Expect = 2e-04
Identities = 19/96 (19%), Positives = 42/96 (43%), Gaps = 6/96 (6%)
Query: 148 MPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT---RPKLLFLDEPT 204
+ + + E L + I+ +S G KR +++ + +L+ + LL +DEP
Sbjct: 161 NIELKLLDLVKRLFLESDLLRLLKLLIKGISDGTKRLLALLLALLSALPKGSLLLIDEPE 220
Query: 205 SGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPS 240
+GL ++ + +L ++ +I + H P
Sbjct: 221 NGLHPKLLRKLVELLKELSEKGA---QLIFTTHSPL 253
|
Length = 256 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 3e-04
Identities = 62/248 (25%), Positives = 99/248 (39%), Gaps = 62/248 (25%)
Query: 16 EMESSNKTANSLINVNEDDGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIM 75
+SN I +D+G+ L + NG ++E L+ G+ L I
Sbjct: 432 GGRNSNLVPGRGIVEYQDNGIKFENIPL---VTPNGDV----LIESLSFEVPSGNNLLIC 484
Query: 76 GPSGSGKTTLLDALA-------GRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLIT 128
GP+G GK++L L GRL + GK+ YV Q +T
Sbjct: 485 GPNGCGKSSLFRILGELWPVYGGRLTKPAK--GKLF--------------YVPQR-PYMT 527
Query: 129 TLTVKEAVYYSAQLQLPDTMPKSDKKERA-----------EVTI-----REMGLQDAMNT 172
T+++ + Y PD+ D K R V + RE G A+
Sbjct: 528 LGTLRDQIIY------PDS--SEDMKRRGLSDKDLEQILDNVQLTHILEREGGW-SAVQD 578
Query: 173 RIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTI 232
+ LSGG+K+R++++ +P+ LDE T SA S V + +L + GI T+
Sbjct: 579 WMDVLSGGEKQRIAMARLFYHKPQFAILDECT----SAVSVDVEGYMYRLCREFGI--TL 632
Query: 233 IASIHQPS 240
+ H+ S
Sbjct: 633 FSVSHRKS 640
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 4e-04
Identities = 39/141 (27%), Positives = 62/141 (43%), Gaps = 23/141 (16%)
Query: 72 LAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLT 131
+A++GP+G GK+T+L ++G L + + + K +A + +V D L
Sbjct: 538 IAMVGPNGIGKSTILKLISGEL----QPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLL 593
Query: 132 VKEAVYYSAQLQLPDTMPKSDKKERAEV----TIREMGLQDAMNTRIRRLSGGQKRRVSI 187
+ Q K RA + + LQ M T LSGGQK RV+
Sbjct: 594 YMMRCFPGVPEQ----------KLRAHLGSFGVTGNLALQ-PMYT----LSGGQKSRVAF 638
Query: 188 SIEILTRPKLLFLDEPTSGLD 208
+ +P +L LDEP++ LD
Sbjct: 639 AKITFKKPHILLLDEPSNHLD 659
|
Length = 718 |
| >gnl|CDD|233821 TIGR02322, phosphon_PhnN, phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 4e-04
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 69 GHLLAIMGPSGSGKTTLLDALAGRLGSDTR 98
G L+ ++GPSG+GK TLLD RL D R
Sbjct: 1 GRLIYVVGPSGAGKDTLLDYARARLAGDPR 30
|
Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PMID:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP [Central intermediary metabolism, Phosphorus compounds]. Length = 179 |
| >gnl|CDD|221983 pfam13207, AAA_17, AAA domain | Back alignment and domain information |
|---|
Score = 39.2 bits (91), Expect = 6e-04
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 71 LLAIMGPSGSGKTTLLDALAGRLG 94
++ I GP GSGK+TL LA +LG
Sbjct: 1 IILITGPPGSGKSTLAKKLAEKLG 24
|
Length = 114 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 7e-04
Identities = 39/169 (23%), Positives = 80/169 (47%), Gaps = 22/169 (13%)
Query: 52 KKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKA 111
+ G +L L+ + P + ++G +G+GK+++L+AL R+ + G+I+I+
Sbjct: 1245 RPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALF-RIVELEK--GRIMIDD---- 1297
Query: 112 LAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKK--------ERAEV--TI 161
+ + D + ++ + V +S ++ + P S+ ERA + I
Sbjct: 1298 --CDVAKFGLTDLRRVLSIIPQSPVLFSGTVRF-NIDPFSEHNDADLWEALERAHIKDVI 1354
Query: 162 RE--MGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208
GL ++ S GQ++ +S++ +L R K+L LDE T+ +D
Sbjct: 1355 DRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVD 1403
|
Length = 1495 |
| >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 7e-04
Identities = 30/110 (27%), Positives = 54/110 (49%), Gaps = 6/110 (5%)
Query: 153 KKERAEVTIREMGLQD---AMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDS 209
+K RA + +G++D AM + L+ G+ ++V I+I + +P+LL DEPT+ ++
Sbjct: 132 RKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEP 191
Query: 210 AASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTV 259
+ + +L Q + T I I + Q + +L GQTV
Sbjct: 192 TTQAQIFRLLTRLNQNNN---TTILLISHDLQMLSQWADKINVLYCGQTV 238
|
Length = 330 |
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.001
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 11/68 (16%)
Query: 174 IRRLSGGQKRRVSISI-----EIL---TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQR 225
I+ LSGG++ S+++ ++L R +LLFLDEP LD + + +L
Sbjct: 813 IKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSD 872
Query: 226 DGIGRTII 233
GR II
Sbjct: 873 ---GRQII 877
|
Length = 908 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.001
Identities = 41/175 (23%), Positives = 72/175 (41%), Gaps = 15/175 (8%)
Query: 68 PGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILI-NGHKKALAYGTSAYVTQDDTL 126
P + I G +G GK++LL +AG + +G I N + +A Y+ + L
Sbjct: 25 PSAITYIKGANGCGKSSLLRMIAGIM---QPSSGNIYYKNCNINNIAKPYCTYIGHNLGL 81
Query: 127 ITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVS 186
+TV E + + +++ + E I L D ++ + LS G ++ V+
Sbjct: 82 KLEMTVFENLKFWSEIY--------NSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVA 133
Query: 187 ISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSS 241
I+ I + L LDE + L + + I GI ++ S H SS
Sbjct: 134 IARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGI---VLLSSHLESS 185
|
Length = 195 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.001
Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 19/124 (15%)
Query: 128 TTLTVKEAVYYSAQLQLPDTMPKSDKKERAEV----TIREMGL-----QDAMNTRIRRLS 178
+TL V E +Y S + +L +PK + + + + ++GL ++T LS
Sbjct: 35 STL-VNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLST----LS 89
Query: 179 GGQKRRVSISIEILTRPK--LLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASI 236
GG+ +RV ++ E+ + P L LDEP++GL ++ I L G T+I
Sbjct: 90 GGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDL---GNTVILIE 146
Query: 237 HQPS 240
H
Sbjct: 147 HNLD 150
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|235825 PRK06547, PRK06547, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.001
Identities = 15/22 (68%), Positives = 15/22 (68%)
Query: 74 IMGPSGSGKTTLLDALAGRLGS 95
I G SGSGKTTL ALA R G
Sbjct: 20 IDGRSGSGKTTLAGALAARTGF 41
|
Length = 172 |
| >gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 0.002
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 59 LEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKI 103
L++L K G ++G SG GK+TLL+AL L TG+I
Sbjct: 76 LDELRELLK-GKTSVLVGQSGVGKSTLLNAL---LPELVLATGEI 116
|
YjeQ (YloQ in Bacillus subtilis) is a ribosomal small subunit-dependent GTPase; hence also known as RsgA. YjeQ is a late-stage ribosomal biogenesis factor involved in the 30S subunit maturation, and it represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. Length = 211 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.002
Identities = 48/203 (23%), Positives = 87/203 (42%), Gaps = 33/203 (16%)
Query: 69 GHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLIT 128
G ++ I+G +G GK+TL G Q G+IL++G A V+ D+
Sbjct: 368 GDIVFIVGENGCGKSTLAKLF---CGLYIPQEGEILLDG----------AAVS-ADSRDD 413
Query: 129 TLTVKEAVYYSAQLQLPDTMPKSDKKER-----AEVTIREMGLQDAMN------TRIRRL 177
+ A++ A L D + D+ E A+ ++ + + D + + L
Sbjct: 414 YRDLFSAIF--ADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTAL 471
Query: 178 SGGQKRRVSISIEILTRPKLLFLDEPTSGLDSA-ASYYVMSRIAKLGQRDGIGRTIIASI 236
S GQ++R+++ L +L DE + D A ++ + L ++ G+TII
Sbjct: 472 STGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQ---GKTIIIIS 528
Query: 237 HQPSSEVFQLFHNLCLLSAGQTV 259
H + F+L + L+AG V
Sbjct: 529 H--DDQYFELADQIIKLAAGCIV 549
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|217416 pfam03193, DUF258, Protein of unknown function, DUF258 | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 0.004
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 69 GHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKI 103
G + G SG GK+TLL+AL L +TG+I
Sbjct: 35 GKTSVLAGQSGVGKSTLLNAL---LPELDLRTGEI 66
|
Length = 161 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 449 | |||
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 100.0 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 100.0 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 100.0 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.98 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.98 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.98 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.98 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.97 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.97 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.97 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.96 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.96 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.96 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.95 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.95 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.95 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.95 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.95 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.95 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.94 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.94 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.94 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.93 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.93 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.93 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.92 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.91 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.91 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 99.9 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 99.89 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.89 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 99.89 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.89 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.88 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.87 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.84 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 99.83 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 99.83 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 99.83 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.83 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 99.82 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 99.81 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.81 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.8 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.8 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 99.79 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.78 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.77 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 99.74 | |
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 99.73 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 99.7 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 99.64 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.64 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 99.63 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 99.56 | |
| PRK00064 | 361 | recF recombination protein F; Reviewed | 99.55 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 99.54 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 99.53 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 99.45 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 99.45 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.42 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.41 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 99.39 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 99.39 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 99.37 | |
| TIGR00618 | 1042 | sbcc exonuclease SbcC. This family is based on the | 99.36 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 99.34 | |
| cd03286 | 218 | ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS | 99.34 | |
| PRK10869 | 553 | recombination and repair protein; Provisional | 99.34 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 99.3 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 99.3 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 99.29 | |
| PF13304 | 303 | AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T | 99.29 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.25 | |
| PRK13695 | 174 | putative NTPase; Provisional | 99.24 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 99.21 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 99.19 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 99.17 | |
| PRK10246 | 1047 | exonuclease subunit SbcC; Provisional | 99.16 | |
| PRK13830 | 818 | conjugal transfer protein TrbE; Provisional | 99.15 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 99.08 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 99.08 | |
| PRK06793 | 432 | fliI flagellum-specific ATP synthase; Validated | 99.08 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 99.07 | |
| COG3910 | 233 | Predicted ATPase [General function prediction only | 99.01 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 98.99 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 98.97 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 98.97 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 98.96 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 98.96 | |
| TIGR03238 | 504 | dnd_assoc_3 dnd system-associated protein 3. cereu | 98.92 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 98.9 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 98.81 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 98.81 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 98.78 | |
| PRK07196 | 434 | fliI flagellum-specific ATP synthase; Validated | 98.76 | |
| TIGR01026 | 440 | fliI_yscN ATPase FliI/YscN family. This family of | 98.74 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 98.67 | |
| PRK05399 | 854 | DNA mismatch repair protein MutS; Provisional | 98.67 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 98.66 | |
| PRK14079 | 349 | recF recombination protein F; Provisional | 98.65 | |
| TIGR00611 | 365 | recf recF protein. All proteins in this family for | 98.63 | |
| PRK13891 | 852 | conjugal transfer protein TrbE; Provisional | 98.62 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 98.61 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 98.61 | |
| PRK06002 | 450 | fliI flagellum-specific ATP synthase; Validated | 98.56 | |
| cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'- | 98.55 | |
| TIGR02680 | 1353 | conserved hypothetical protein TIGR02680. Members | 98.47 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 98.44 | |
| PRK09825 | 176 | idnK D-gluconate kinase; Provisional | 98.39 | |
| PRK06315 | 442 | type III secretion system ATPase; Provisional | 98.37 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 98.34 | |
| PRK13898 | 800 | type IV secretion system ATPase VirB4; Provisional | 98.33 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 98.3 | |
| TIGR02903 | 615 | spore_lon_C ATP-dependent protease, Lon family. Me | 98.29 | |
| PF13558 | 90 | SbcCD_C: Putative exonuclease SbcCD, C subunit; PD | 98.29 | |
| TIGR00416 | 454 | sms DNA repair protein RadA. The gene protuct code | 98.26 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 98.25 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 98.23 | |
| PF00488 | 235 | MutS_V: MutS domain V C-terminus.; InterPro: IPR00 | 98.22 | |
| PRK13873 | 811 | conjugal transfer ATPase TrbE; Provisional | 98.21 | |
| TIGR00152 | 188 | dephospho-CoA kinase. This model produces scores i | 98.17 | |
| PRK08149 | 428 | ATP synthase SpaL; Validated | 98.16 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 98.16 | |
| TIGR02524 | 358 | dot_icm_DotB Dot/Icm secretion system ATPase DotB. | 98.15 | |
| cd01121 | 372 | Sms Sms (bacterial radA) DNA repair protein. This | 98.13 | |
| PRK09270 | 229 | nucleoside triphosphate hydrolase domain-containin | 98.13 | |
| PF09818 | 448 | ABC_ATPase: Predicted ATPase of the ABC class; Int | 98.11 | |
| TIGR00767 | 415 | rho transcription termination factor Rho. Members | 98.08 | |
| cd01136 | 326 | ATPase_flagellum-secretory_path_III Flagellum-spec | 98.07 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 98.02 | |
| PRK13764 | 602 | ATPase; Provisional | 98.01 | |
| PLN02796 | 347 | D-glycerate 3-kinase | 98.01 | |
| TIGR03880 | 224 | KaiC_arch_3 KaiC domain protein, AF_0351 family. T | 98.0 | |
| PRK09099 | 441 | type III secretion system ATPase; Provisional | 98.0 | |
| PRK07594 | 433 | type III secretion system ATPase SsaN; Validated | 98.0 |
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-72 Score=603.11 Aligned_cols=395 Identities=41% Similarity=0.635 Sum_probs=330.1
Q ss_pred CCCCCeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec
Q 044030 31 NEDDGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKK 110 (449)
Q Consensus 31 ~~~~~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~ 110 (449)
+...++.+.|+|++++ ...+....+++|+|||++++|||++||||||||||||||++|+|+...+...+|+|++||++.
T Consensus 19 ~~~~~~~~~~~~~~~~-~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~ 97 (613)
T KOG0061|consen 19 PYLEPVKLSFRNLTLS-SKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPR 97 (613)
T ss_pred cccccceeEEEEEEEE-ecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccC
Confidence 3456778999999998 332211358899999999999999999999999999999999999976546799999999764
Q ss_pred cc--ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCC-----CCChHHHH
Q 044030 111 AL--AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIR-----RLSGGQKR 183 (449)
Q Consensus 111 ~~--~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~-----~LSgGerq 183 (449)
.. .++.+|||.|+|.++|++||+|++.|++.+++|...+.++++++++++++.+||.+++|+.++ ++||||||
T Consensus 98 ~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErk 177 (613)
T KOG0061|consen 98 DSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERK 177 (613)
T ss_pred chhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhh
Confidence 32 346789999999999999999999999999999888889999999999999999999999995 79999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
||+||.+|++||+||+|||||||||+.++.++++.|+++|++ |+ |||+++|||+.+++++||++++|++|+++|+|+
T Consensus 178 Rvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~-gr--tVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~ 254 (613)
T KOG0061|consen 178 RVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARS-GR--TVICTIHQPSSELFELFDKLLLLSEGEVVYSGS 254 (613)
T ss_pred HHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhC-CC--EEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecC
Confidence 999999999999999999999999999999999999999976 66 999999999999999999999999999999999
Q ss_pred hhhHHHHHHHCCCCCCCCCCchhHHHHHhhhh-hhHhhhhccCCCCCCcHHHHHHHHHHHHhchhhHHHHHHHHH-Hhhh
Q 044030 264 ATAANEFFAFNGFPCPTHQNPSDHFLKTINKD-FQKEAEEGLADGEIPTEEVINILKRSYKSCGIYEQVGSQVAE-ICKQ 341 (449)
Q Consensus 264 ~~~~~~~f~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~-~~~~ 341 (449)
++++.+||+..|++||++.||+||++++++.+ ...... .........+.++..+...+....... +..
T Consensus 255 ~~~~~~ff~~~G~~~P~~~Npadf~l~l~s~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 324 (613)
T KOG0061|consen 255 PRELLEFFSSLGFPCPELENPADFLLDLLSVDSGTRELE---------EAVRIAKLINKFSQTDNLKKTLEALEKSLST- 324 (613)
T ss_pred HHHHHHHHHhCCCCCCCcCChHHHHHHHHccCCCchhHH---------hHHHHHHHhhhccccchhhhhHHHHhhhccc-
Confidence 99999999999999999999999999988743 100000 001111111112111111111000000 000
Q ss_pred cCCCcccCccCCCHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHH
Q 044030 342 NYGTLEKKRKHASFLTQCHVLTRRSFVNMYRDLGYYWFRLAIYISMALGLATLFSNLGTGYRSIQARGSLLMFVASFITF 421 (449)
Q Consensus 342 ~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~~~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~~ 421 (449)
.........++||.|+++|++|.+++.+|||.+.+.|+++.+++|+++|++||+++++..++++|.|++||.+.++.|
T Consensus 325 --~~~~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~f 402 (613)
T KOG0061|consen 325 --SKKVEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGIQNRLGLFFFILSFMTF 402 (613)
T ss_pred --ccccccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 000111127899999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHh-hHHHHHHHHHHHHHHH
Q 044030 422 MTIG-GFPSFVEDMKKCLFLW 441 (449)
Q Consensus 422 ~~~~-~~~~~~~er~~~~~~~ 441 (449)
.++. +++.|+.||++|.+=.
T Consensus 403 ~~~~~~i~~f~~e~~~f~rE~ 423 (613)
T KOG0061|consen 403 LSMFGAVPVFPQERPIFLRET 423 (613)
T ss_pred HHHHhHHHHhHHHHHHHHHHH
Confidence 8876 6999999999998643
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-67 Score=573.69 Aligned_cols=393 Identities=34% Similarity=0.522 Sum_probs=313.5
Q ss_pred CCCeeEEEEeeEEEEeecC------------------------cccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHH
Q 044030 33 DDGVFLTWKDLTVTIVSNG------------------------KKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDA 88 (449)
Q Consensus 33 ~~~~~l~~~nls~~~~~~~------------------------~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~ 88 (449)
..++.+++.|++++ +... .++++.+|+|||+++++||++||+||||||||||||+
T Consensus 35 ~~~~~~~~~~~~y~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~i 113 (659)
T PLN03211 35 CYPITLKFMDVCYR-VKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNA 113 (659)
T ss_pred CCceEEEEEeEEEE-EccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHH
Confidence 34788999999998 4211 1235779999999999999999999999999999999
Q ss_pred HHcCCCCCCCceeEEEECCEeccc-ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc
Q 044030 89 LAGRLGSDTRQTGKILINGHKKAL-AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ 167 (449)
Q Consensus 89 l~G~~~~~~~~~G~I~~~g~~~~~-~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 167 (449)
|+|+.++. ..+|+|.+||++... ..+.++||+|++.+++.+||+||+.|++.++.+...+.++.+++++++++.+||.
T Consensus 114 LaG~~~~~-~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~ 192 (659)
T PLN03211 114 LAGRIQGN-NFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLT 192 (659)
T ss_pred HhCCCCCC-ceeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCCh
Confidence 99998763 258999999987532 2356999999999999999999999988766554445556667899999999999
Q ss_pred hhhCcc-----CCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHH
Q 044030 168 DAMNTR-----IRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSE 242 (449)
Q Consensus 168 ~~~~~~-----~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~ 242 (449)
+++|+. +++|||||||||+||++|+.+|++|||||||+|||+.++..+++.|+++++ .|+ |||+++|||+.+
T Consensus 193 ~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~-~g~--TvI~~sH~~~~~ 269 (659)
T PLN03211 193 KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQ-KGK--TIVTSMHQPSSR 269 (659)
T ss_pred hhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh-CCC--EEEEEecCCCHH
Confidence 988654 578999999999999999999999999999999999999999999999985 455 999999999767
Q ss_pred HHhhcCeEEEeeCCeEEEecChhhHHHHHHHCCCCCCCCCCchhHHHHHhhhhhhHhhhhccCCCCCCcHHHHHHHHHHH
Q 044030 243 VFQLFHNLCLLSAGQTVYFGPATAANEFFAFNGFPCPTHQNPSDHFLKTINKDFQKEAEEGLADGEIPTEEVINILKRSY 322 (449)
Q Consensus 243 i~~~~D~v~~l~~G~iv~~g~~~~~~~~f~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (449)
++++||++++|++|++++.|+++++.+||+..|++||.+.||+||++++++.+..... .. ........+.+.+.|
T Consensus 270 i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~~~---~~--~~~~~~~~~~l~~~~ 344 (659)
T PLN03211 270 VYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDG---VS--EREKPNVKQSLVASY 344 (659)
T ss_pred HHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcCccccCCC---cc--ccccchHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999998764321100 00 000111223344455
Q ss_pred HhchhhHHHHHHHHH--Hhh---h-----cCCCc--ccCccCCCHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHH
Q 044030 323 KSCGIYEQVGSQVAE--ICK---Q-----NYGTL--EKKRKHASFLTQCHVLTRRSFVNMYRDLGYYWFRLAIYISMALG 390 (449)
Q Consensus 323 ~~s~~~~~~~~~~~~--~~~---~-----~~~~~--~~~~~~~s~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~~~~~li 390 (449)
++.. .++..+.... ... . ..... ....+.++|++|+.+|++|++++ |||+.+.++|+++++++|++
T Consensus 345 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll 422 (659)
T PLN03211 345 NTLL-APKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALL 422 (659)
T ss_pred Hhhc-cHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHH
Confidence 4311 1111111110 000 0 00000 11224578999999999999998 89999999999999999999
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHH
Q 044030 391 LATLFSNLGTGYRSIQARGSLLMFVASFITFMT-IGGFPSFVEDMKKCLF 439 (449)
Q Consensus 391 ~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~~~~-~~~~~~~~~er~~~~~ 439 (449)
+|++||+++ ..++++|.|++||+++++.+.+ +..++.|+.||++|++
T Consensus 423 ~G~lf~~~~--~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~r 470 (659)
T PLN03211 423 AGLMWWHSD--FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVK 470 (659)
T ss_pred HHHHHhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 999999985 6789999999999998877654 6789999999999975
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-67 Score=570.78 Aligned_cols=374 Identities=35% Similarity=0.550 Sum_probs=320.2
Q ss_pred cccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc--ccCcEEEEcCCCCCCCCCC
Q 044030 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--AYGTSAYVTQDDTLITTLT 131 (449)
Q Consensus 54 ~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--~~~~i~yv~Q~~~l~~~lT 131 (449)
+++.+|+|+|+++++||+++|+|||||||||||++|+|+.+++...+|+|.+||.+... .++.++||+|++.+++.+|
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 46789999999999999999999999999999999999987643458999999997642 2357999999999999999
Q ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCC------CCChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 044030 132 VKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIR------RLSGGQKRRVSISIEILTRPKLLFLDEPTS 205 (449)
Q Consensus 132 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~------~LSgGerqRv~ia~aL~~~P~llllDEPts 205 (449)
|+||+.|++.++.+...+.++.+++++++++.+||.+++|++++ +|||||||||+||+||+.+|++++|||||+
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 99999999988776656667777889999999999999999986 599999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHHHHHHHCCCCCCCCCCch
Q 044030 206 GLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANEFFAFNGFPCPTHQNPS 285 (449)
Q Consensus 206 gLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~~~f~~~g~~~~~~~~~~ 285 (449)
|||+.++..+++.|++++++ |+ |||+++|||+.+++++||++++|++|+++++|+++++.+||+..|++||++.||+
T Consensus 196 gLD~~~~~~l~~~L~~l~~~-g~--tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~a 272 (617)
T TIGR00955 196 GLDSFMAYSVVQVLKGLAQK-GK--TIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPA 272 (617)
T ss_pred chhHHHHHHHHHHHHHHHhC-CC--EEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCCCCCCCChH
Confidence 99999999999999999854 55 9999999998789999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhhhhHhhhhccCCCCCCcHHHHHHHHHHHHhchhhHHHHHHHHHHhhhcC----C--CcccCccCCCHHHHH
Q 044030 286 DHFLKTINKDFQKEAEEGLADGEIPTEEVINILKRSYKSCGIYEQVGSQVAEICKQNY----G--TLEKKRKHASFLTQC 359 (449)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~s~~~q~ 359 (449)
|++++.++.+...+ ....+..+.+.+.|+++..+++..+.+........ . .....++..+|+.|+
T Consensus 273 d~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~ 343 (617)
T TIGR00955 273 DFYVQVLAVIPGSE---------NESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQF 343 (617)
T ss_pred HHHHHHhhcCcccc---------cchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHH
Confidence 99998875432111 11223445666777777665554443332111100 0 011234678999999
Q ss_pred HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHH
Q 044030 360 HVLTRRSFVNMYRDLGYYWFRLAIYISMALGLATLFSNLGTGYRSIQARGSLLMFVASFITFMTI-GGFPSFVEDMKKCL 438 (449)
Q Consensus 360 ~~l~~R~~~~~~Rd~~~~~~r~~~~~~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~~~~~-~~~~~~~~er~~~~ 438 (449)
.+|++|++++.||||.++.+|+++.+++|+++|++||+++.++.++++|.|++||++++++|.++ ..++.|++||++|+
T Consensus 344 ~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~ 423 (617)
T TIGR00955 344 YALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFL 423 (617)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988875 56899999999997
Q ss_pred H
Q 044030 439 F 439 (449)
Q Consensus 439 ~ 439 (449)
+
T Consensus 424 r 424 (617)
T TIGR00955 424 R 424 (617)
T ss_pred H
Confidence 5
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-65 Score=596.04 Aligned_cols=383 Identities=30% Similarity=0.496 Sum_probs=324.5
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-cc
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-AY 114 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-~~ 114 (449)
..++|+||++++ . .+.+.+.+|+|||+++++||++||+||||||||||||+|+|+.+++.+.+|+|.+||++... .+
T Consensus 758 ~~l~~~nl~~~~-~-~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~ 835 (1394)
T TIGR00956 758 DIFHWRNLTYEV-K-IKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQ 835 (1394)
T ss_pred ceEEEEeeEEEe-c-CCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhh
Confidence 458999999983 2 12245689999999999999999999999999999999999987543468999999998642 24
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCC----CCChHHHHHHHHHHH
Q 044030 115 GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIR----RLSGGQKRRVSISIE 190 (449)
Q Consensus 115 ~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~----~LSgGerqRv~ia~a 190 (449)
+.++||+|++.+++.+||+||+.|++.++.+...+.++.+++++++++.+||.+++|+.++ +|||||||||+||+|
T Consensus 836 ~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~a 915 (1394)
T TIGR00956 836 RSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVE 915 (1394)
T ss_pred cceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHH
Confidence 5799999999999999999999999887765555566667889999999999999999997 799999999999999
Q ss_pred HHhCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCC-eEEEecCh----
Q 044030 191 ILTRPK-LLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAG-QTVYFGPA---- 264 (449)
Q Consensus 191 L~~~P~-llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G-~iv~~g~~---- 264 (449)
|+.+|+ ||||||||+|||+.++..+++.|+++++ .|+ |||+++|||+..+++.||++++|++| +++++|++
T Consensus 916 L~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~-~g~--tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~ 992 (1394)
T TIGR00956 916 LVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLAD-HGQ--AILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENS 992 (1394)
T ss_pred HHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHH-cCC--EEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCccccc
Confidence 999997 9999999999999999999999999985 455 99999999986678899999999987 99999997
Q ss_pred hhHHHHHHHCCC-CCCCCCCchhHHHHHhhhhhhHhhhhccCCCCCCcHHHHHHHHHHHHhchhhHHHHHHHHHHhhhcC
Q 044030 265 TAANEFFAFNGF-PCPTHQNPSDHFLKTINKDFQKEAEEGLADGEIPTEEVINILKRSYKSCGIYEQVGSQVAEICKQNY 343 (449)
Q Consensus 265 ~~~~~~f~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 343 (449)
+++.+||+..|+ +||++.||+||++++++..... ...+.+.+.|+.|..+++..++++.......
T Consensus 993 ~~~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~--------------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 1058 (1394)
T TIGR00956 993 HTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGA--------------HANQDYHEVWRNSSEYQAVKNELDRLEAELS 1058 (1394)
T ss_pred chHHHHHHhcCCCCCCCCCCHHHHHHHHhhccccc--------------chhccHHHHHhcCHHHHHHHHHHHHhhcccc
Confidence 568899999996 9999999999999987542110 0012466778777766665555544322111
Q ss_pred -C-----CcccCccCCCHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHH
Q 044030 344 -G-----TLEKKRKHASFLTQCHVLTRRSFVNMYRDLGYYWFRLAIYISMALGLATLFSNLGTGYRSIQARGSLLMFVAS 417 (449)
Q Consensus 344 -~-----~~~~~~~~~s~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~~~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~ 417 (449)
. .....++++||++|+++|++|+++++||||.++++|+++++++|+++|++||+++++..++++|+|++|++++
T Consensus 1059 ~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~i~~~~g~~f~~~~ 1138 (1394)
T TIGR00956 1059 KAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQMFAVFMATV 1138 (1394)
T ss_pred cCccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 0 0112457899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHhhHHHHHHHHHHH
Q 044030 418 FITFMTIGGFPSFVEDMKKC 437 (449)
Q Consensus 418 ~~~~~~~~~~~~~~~er~~~ 437 (449)
+..+.....+|.|+.||.+|
T Consensus 1139 ~~~~~~~~~~~~f~~~r~~~ 1158 (1394)
T TIGR00956 1139 LFNPLIQQYLPPFVAQRDLY 1158 (1394)
T ss_pred HHHHHHHHhhhhHHHHHHHH
Confidence 88877777899999999885
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-66 Score=597.91 Aligned_cols=400 Identities=26% Similarity=0.376 Sum_probs=329.4
Q ss_pred CCeeEEEEeeEEEEeecC--------------------------cccccceeeeeeEEEecCeEEEEECCCCCcHHHHHH
Q 044030 34 DGVFLTWKDLTVTIVSNG--------------------------KKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLD 87 (449)
Q Consensus 34 ~~~~l~~~nls~~~~~~~--------------------------~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~ 87 (449)
..+.+.|+|++++....+ +...+.||+|||+.+++||+++|+||||||||||||
T Consensus 26 ~~~~v~~~~l~v~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk 105 (1394)
T TIGR00956 26 YKLGVAYKNLSAYGVAADSDYQPTFPNALLKILTRGFRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLK 105 (1394)
T ss_pred CeeeEEEECCEEEEEeccccccCchHHHHHHHHHHHHHHhcccCCCCcceeeeCCEEEEECCEEEEEECCCCCCHHHHHH
Confidence 367799999999842110 112356999999999999999999999999999999
Q ss_pred HHHcCCCCC-CCceeEEEECCEeccc----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCC----CCCHHHHHHH-H
Q 044030 88 ALAGRLGSD-TRQTGKILINGHKKAL----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPD----TMPKSDKKER-A 157 (449)
Q Consensus 88 ~l~G~~~~~-~~~~G~I~~~g~~~~~----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~----~~~~~~~~~~-v 157 (449)
+|+|+..+. .+.+|+|.+||.+... .++.++||+|++.+++.+||+|++.|++.++.+. ..++++..++ +
T Consensus 106 ~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~ 185 (1394)
T TIGR00956 106 TIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIA 185 (1394)
T ss_pred HHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Confidence 999987421 2369999999987531 1345999999999999999999999998776432 2233443333 5
Q ss_pred HHHHHHcCCchhhCccC-----CCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEE
Q 044030 158 EVTIREMGLQDAMNTRI-----RRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTI 232 (449)
Q Consensus 158 ~~~l~~lgL~~~~~~~~-----~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~ti 232 (449)
+++++.+||++++|+++ ++|||||||||+||++|+.+|++++|||||+|||+.++..+++.|++++++.|+ ||
T Consensus 186 ~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~--tv 263 (1394)
T TIGR00956 186 DVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDT--TP 263 (1394)
T ss_pred HHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCC--EE
Confidence 67899999999988765 689999999999999999999999999999999999999999999999965565 99
Q ss_pred EEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHHHHHHHCCCCCCCCCCchhHHHHHhhhhhhHhhhhccCCCCCCcH
Q 044030 233 IASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANEFFAFNGFPCPTHQNPSDHFLKTINKDFQKEAEEGLADGEIPTE 312 (449)
Q Consensus 233 i~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~~~f~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (449)
|+++|||.++++++||++++|++|+++++|+++++.+||++.|++||++.||+||++++.+.+.. ....+.+...+
T Consensus 264 ii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~-~~~~~~e~~~~--- 339 (1394)
T TIGR00956 264 LVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAER-QIKPGYEKKVP--- 339 (1394)
T ss_pred EEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHhccChhhh-hccccccccCC---
Confidence 99999998889999999999999999999999999999999999999999999998887654321 11111111111
Q ss_pred HHHHHHHHHHHhchhhHHHHHHHHHHhhh---------------c---CCCcccCccCCCHHHHHHHHHHHHHHHHhhCh
Q 044030 313 EVINILKRSYKSCGIYEQVGSQVAEICKQ---------------N---YGTLEKKRKHASFLTQCHVLTRRSFVNMYRDL 374 (449)
Q Consensus 313 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~---------------~---~~~~~~~~~~~s~~~q~~~l~~R~~~~~~Rd~ 374 (449)
...+++.+.|++|..++++.++++..... . ........+..||++|+++|++|+++++||||
T Consensus 340 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~ 419 (1394)
T TIGR00956 340 RTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNP 419 (1394)
T ss_pred CCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCH
Confidence 23457888999988777666655432111 0 00111235778999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 044030 375 GYYWFRLAIYISMALGLATLFSNLGTGYRSIQARGSLLMFVASFITFMTIGGFPSFVEDMKKCLF 439 (449)
Q Consensus 375 ~~~~~r~~~~~~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~er~~~~~ 439 (449)
.++++|+++++++||++|++||+++++++++++|.|++||++++.+|+++..++.++.||+||++
T Consensus 420 ~~~~~r~~~~ii~~li~G~~F~~~~~~~~~~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~i~~r 484 (1394)
T TIGR00956 420 SFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALFFAILFNAFSSLLEIASMYEARPIVEK 484 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceee
Confidence 99999999999999999999999999999999999999999999999999999999999999965
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-65 Score=592.31 Aligned_cols=386 Identities=27% Similarity=0.411 Sum_probs=323.6
Q ss_pred CeeEEEEeeEEEEeecCc--------ccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEEC
Q 044030 35 GVFLTWKDLTVTIVSNGK--------KGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILIN 106 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~--------~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~ 106 (449)
++.++|+||+|+ +.... ++.+.+|+|||+++++|+++||+||||||||||||+|+|+.+++ ..+|+|.+|
T Consensus 865 ~~~~~~~~v~y~-v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g-~~~G~I~in 942 (1470)
T PLN03140 865 PLAMSFDDVNYF-VDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YIEGDIRIS 942 (1470)
T ss_pred cceEEEEEEEEE-EccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCC-cccceEEEC
Confidence 457999999998 43211 13457999999999999999999999999999999999997642 368999999
Q ss_pred CEeccc--ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccC-----CCCCh
Q 044030 107 GHKKAL--AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRI-----RRLSG 179 (449)
Q Consensus 107 g~~~~~--~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~-----~~LSg 179 (449)
|.+... .++.+|||+|++.+++.+||+|++.|++.++.+...+.++..+.++++++.+||.+++|+.+ ++|||
T Consensus 943 G~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSg 1022 (1470)
T PLN03140 943 GFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLST 1022 (1470)
T ss_pred CccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCH
Confidence 987532 23568999999999999999999999987776555555666678999999999999999997 58999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeC-CeE
Q 044030 180 GQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSA-GQT 258 (449)
Q Consensus 180 GerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~-G~i 258 (449)
||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++ |+ |||+++|||+.++++.||++++|++ |++
T Consensus 1023 GerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~-g~--tVI~t~Hq~~~~i~~~~D~vllL~~gG~~ 1099 (1470)
T PLN03140 1023 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GR--TVVCTIHQPSIDIFEAFDELLLMKRGGQV 1099 (1470)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CC--EEEEEeCCCCHHHHHhCCEEEEEcCCCEE
Confidence 9999999999999999999999999999999999999999999854 55 9999999997678999999999996 899
Q ss_pred EEecCh----hhHHHHHHHC-CC-CCCCCCCchhHHHHHhhhhhhHhhhhccCCCCCCcHHHHHHHHHHHHhchhhHHHH
Q 044030 259 VYFGPA----TAANEFFAFN-GF-PCPTHQNPSDHFLKTINKDFQKEAEEGLADGEIPTEEVINILKRSYKSCGIYEQVG 332 (449)
Q Consensus 259 v~~g~~----~~~~~~f~~~-g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 332 (449)
+++|++ +++.+||+.. |. +||++.||+||++++++..... ....++.+.|++|+.+++..
T Consensus 1100 v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~--------------~~~~d~~~~~~~s~~~~~~~ 1165 (1470)
T PLN03140 1100 IYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEV--------------KLGIDFAEHYKSSSLYQRNK 1165 (1470)
T ss_pred EEECCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccc--------------cccchHHHHHhccHHHHHHH
Confidence 999996 5789999997 66 4999999999999986532100 01125778899888877766
Q ss_pred HHHHHHhhhcCCCc---ccCccCCCHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhcCCCCCh---hhHH
Q 044030 333 SQVAEICKQNYGTL---EKKRKHASFLTQCHVLTRRSFVNMYRDLGYYWFRLAIYISMALGLATLFSNLGTGY---RSIQ 406 (449)
Q Consensus 333 ~~~~~~~~~~~~~~---~~~~~~~s~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~~~~~li~G~~f~~~~~~~---~~~~ 406 (449)
+.++++........ ...+++++|++|+++|++|+++++||||.++++|+++.+++||++|++||+++++. .+++
T Consensus 1166 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~ 1245 (1470)
T PLN03140 1166 ALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLT 1245 (1470)
T ss_pred HHHHHhccCCCCccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHH
Confidence 65554432211111 12457889999999999999999999999999999999999999999999999765 5678
Q ss_pred HHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHH
Q 044030 407 ARGSLLMFVASFITFMTI-GGFPSFVEDMKKCLF 439 (449)
Q Consensus 407 ~~~g~lf~~~~~~~~~~~-~~~~~~~~er~~~~~ 439 (449)
++.|++|++++++.+.++ +.+|.|..||.+|++
T Consensus 1246 ~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~R 1279 (1470)
T PLN03140 1246 MVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYR 1279 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999888665 557999999999984
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-64 Score=583.38 Aligned_cols=402 Identities=28% Similarity=0.379 Sum_probs=325.5
Q ss_pred CCeeEEEEeeEEEEe-ec---------------------------CcccccceeeeeeEEEecCeEEEEECCCCCcHHHH
Q 044030 34 DGVFLTWKDLTVTIV-SN---------------------------GKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTL 85 (449)
Q Consensus 34 ~~~~l~~~nls~~~~-~~---------------------------~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTL 85 (449)
+.+.+.|+||++... .. .++.++.||+|||+.+++||+++|+||||||||||
T Consensus 128 ~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTL 207 (1470)
T PLN03140 128 PTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTTL 207 (1470)
T ss_pred CCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCccceeccCCeEEEeCCeEEEEEcCCCCCHHHH
Confidence 457789999999742 00 11234679999999999999999999999999999
Q ss_pred HHHHHcCCCCCCCceeEEEECCEeccc--ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCC-------CCCHHHH---
Q 044030 86 LDALAGRLGSDTRQTGKILINGHKKAL--AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPD-------TMPKSDK--- 153 (449)
Q Consensus 86 L~~l~G~~~~~~~~~G~I~~~g~~~~~--~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~-------~~~~~~~--- 153 (449)
||+|+|+++++...+|+|.+||++... .++.++||+|++.+++.+||+||+.|+++++.+. ..+.+++
T Consensus 208 Lk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~ 287 (1470)
T PLN03140 208 LLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAG 287 (1470)
T ss_pred HHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhcc
Confidence 999999987743458999999987632 2457999999999999999999999998765321 1111111
Q ss_pred ---------------------HHHHHHHHHHcCCchhhCc-----cCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 044030 154 ---------------------KERAEVTIREMGLQDAMNT-----RIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGL 207 (449)
Q Consensus 154 ---------------------~~~v~~~l~~lgL~~~~~~-----~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgL 207 (449)
+..++++++.+||++++|+ .+++|||||||||+||++|+.+|+++||||||+||
T Consensus 288 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGL 367 (1470)
T PLN03140 288 IFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGL 367 (1470)
T ss_pred CCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCc
Confidence 1235789999999998765 45899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHHHHHHHCCCCCCCCCCchhH
Q 044030 208 DSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANEFFAFNGFPCPTHQNPSDH 287 (449)
Q Consensus 208 D~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~~~f~~~g~~~~~~~~~~~~ 287 (449)
|+.++.++++.|++++++.|. |||+++|||.++++++||+|++|++|+++|+|+++++.+||+++|++||++.||+||
T Consensus 368 Ds~t~~~i~~~Lr~la~~~g~--Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~lGf~cP~~~n~ADF 445 (1470)
T PLN03140 368 DSSTTYQIVKCLQQIVHLTEA--TVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADF 445 (1470)
T ss_pred cHHHHHHHHHHHHHHHHhcCC--EEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHHcCCCCCCCCChHHH
Confidence 999999999999999865555 999999999889999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhHhhhhccCCCCCCcHHHHHHHHHHHHhchhhHHHHHHHHHHhhh---cCCCcccCccCCCHHHHHHHHHH
Q 044030 288 FLKTINKDFQKEAEEGLADGEIPTEEVINILKRSYKSCGIYEQVGSQVAEICKQ---NYGTLEKKRKHASFLTQCHVLTR 364 (449)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~---~~~~~~~~~~~~s~~~q~~~l~~ 364 (449)
++++.+.... +.... ....+......+++.+.|++++.++++.+++...... .......+++..+++.|++.|++
T Consensus 446 l~~v~s~~~~-~~~~~-~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~ 523 (1470)
T PLN03140 446 LQEVTSKKDQ-EQYWA-DRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLKACWD 523 (1470)
T ss_pred HHHhcCchhh-hhhhh-ccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCCHHHHHHHHHH
Confidence 8887654221 11110 0011111123456888999988777766655432111 01111234578899999999999
Q ss_pred HHHHHHhhChhHHHHHHHHHHHHHHHHHHHhcCCCCCh---hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 044030 365 RSFVNMYRDLGYYWFRLAIYISMALGLATLFSNLGTGY---RSIQARGSLLMFVASFITFMTIGGFPSFVEDMKKCLF 439 (449)
Q Consensus 365 R~~~~~~Rd~~~~~~r~~~~~~~~li~G~~f~~~~~~~---~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~er~~~~~ 439 (449)
|+++.++||+.++..|+++.+++|+++|++||+++.+. ...+.+.|++||++++++|.++++++.++.||+||++
T Consensus 524 R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l~~~~~~r~vf~k 601 (1470)
T PLN03140 524 KEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFYK 601 (1470)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHH
Confidence 99999999999999999999999999999999997542 3456788999999999999999999999999999987
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-66 Score=566.01 Aligned_cols=380 Identities=33% Similarity=0.486 Sum_probs=329.5
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecc-c-cc
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKA-L-AY 114 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~-~-~~ 114 (449)
...|+|+.++ .. .+.+.+++|+|||+.++||-++||||+||||||||||+|+|+...+ ..+|+|++||.+.+ . ..
T Consensus 787 V~~w~dl~~~-~~-~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G-~I~Gdi~i~G~p~~q~tF~ 863 (1391)
T KOG0065|consen 787 VFYWVDLPYE-MP-IQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGG-YIEGDILISGFPKDQETFA 863 (1391)
T ss_pred eEEEEeCCcc-cc-ccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccc-eEEeEEEECCeeCchhhhc
Confidence 4677888777 32 2336789999999999999999999999999999999999997653 47999999999865 3 34
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCC----CCChHHHHHHHHHHH
Q 044030 115 GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIR----RLSGGQKRRVSISIE 190 (449)
Q Consensus 115 ~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~----~LSgGerqRv~ia~a 190 (449)
|.+|||.|+|.+.+.+||+|.|.|++.+|+|...+.+++.+.++++++.++|++++|..|+ +||.+||||++||.+
T Consensus 864 R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVE 943 (1391)
T KOG0065|consen 864 RVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVE 943 (1391)
T ss_pred cccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEE
Confidence 6799999999999999999999999999999999999988999999999999999998885 499999999999999
Q ss_pred HHhCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEee-CCeEEEecChhh--
Q 044030 191 ILTRP-KLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLS-AGQTVYFGPATA-- 266 (449)
Q Consensus 191 L~~~P-~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~-~G~iv~~g~~~~-- 266 (449)
|+.+| .||+|||||||||+.++..|++.++++++ .|+ ||+|++|||+.++++.||++++|+ .|++||+|+..+
T Consensus 944 LvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~-tGq--tIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s 1020 (1391)
T KOG0065|consen 944 LVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLAD-TGQ--TILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENS 1020 (1391)
T ss_pred EecCCceeEEecCCCCCccHHHHHHHHHHHHHHHh-cCC--eEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccccc
Confidence 99999 89999999999999999999999999995 555 999999999999999999999997 589999999754
Q ss_pred --HHHHHHHCC-CCCCCCCCchhHHHHHhhhhhhHhhhhccCCCCCCcHHHHHHHHHHHHhchhhHHHHHHHHHHhhhcC
Q 044030 267 --ANEFFAFNG-FPCPTHQNPSDHFLKTINKDFQKEAEEGLADGEIPTEEVINILKRSYKSCGIYEQVGSQVAEICKQNY 343 (449)
Q Consensus 267 --~~~~f~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 343 (449)
+.+||++.| .+||...|||||++++++...+. ..-.++.+.|++|..+++..+.++++.....
T Consensus 1021 ~~li~YFes~~~~~~~~~~NPA~~mLevi~~~~~~--------------~~~~D~a~~w~~S~e~k~~~e~v~~l~~~~~ 1086 (1391)
T KOG0065|consen 1021 SKLIEYFESIGGVKCISDENPAEWMLEVIGAGAEA--------------SLSVDFAEIWKNSEEYKRNKELVKELSQPPP 1086 (1391)
T ss_pred HHHHHHHHhcCCccCCCCCChHHHHHhhccccccc--------------ccCccHHHHHhccHHHHHHHHHHHHHhcCCc
Confidence 667999884 89999899999999987643211 1112588999999999999998888765422
Q ss_pred C----CcccCccCCCHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHH
Q 044030 344 G----TLEKKRKHASFLTQCHVLTRRSFVNMYRDLGYYWFRLAIYISMALGLATLFSNLGTGYRSIQARGSLLMFVASFI 419 (449)
Q Consensus 344 ~----~~~~~~~~~s~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~~~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~ 419 (449)
. ....+++++|+|.|++.+++|++..+||+|.++++|++..++.||++|+.||++|++..++||.+|++|+.+++.
T Consensus 1087 ~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~~~q~lqn~m~a~yma~v~~ 1166 (1391)
T KOG0065|consen 1087 GFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGHNVQGLQNAMGAAYMATVFS 1166 (1391)
T ss_pred cCCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCCcHHHHHHHHHHHHHHHHHh
Confidence 2 223456889999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred HHHHHhhHHHH-HHHHHH
Q 044030 420 TFMTIGGFPSF-VEDMKK 436 (449)
Q Consensus 420 ~~~~~~~~~~~-~~er~~ 436 (449)
.-+..+..|.+ ..||-+
T Consensus 1167 ~~~~~~~~~~~v~~e~~y 1184 (1391)
T KOG0065|consen 1167 GPNNNQLQQPAVATERLY 1184 (1391)
T ss_pred hhhhhhhhhhHHhhhhhh
Confidence 66655544444 444433
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-57 Score=415.17 Aligned_cols=216 Identities=29% Similarity=0.452 Sum_probs=197.5
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
+|+++||+++| |+..+|+|||++|++||+++|+|||||||||||+||+|+..++ +|+|.++|.+...
T Consensus 2 mi~i~~l~K~f------g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~ 72 (240)
T COG1126 2 MIEIKNLSKSF------GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDI 72 (240)
T ss_pred eEEEEeeeEEe------CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhH
Confidence 58999999983 6789999999999999999999999999999999999999774 9999999975421
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHH
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIE 190 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~a 190 (449)
.++.+|+|||+.+|||++||.||+.++...- .+.++++.++++.++|+.+||.+.+|.+|..|||||||||+||||
T Consensus 73 ~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARA 150 (240)
T COG1126 73 LKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARA 150 (240)
T ss_pred HHHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHH
Confidence 2467999999999999999999999986432 246788889999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 191 ILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 191 L~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
|+.+|+++++|||||+|||....++++.++++|++ |+|.|++||++ ..+.+.+|||++|++|+++..|+|++.
T Consensus 151 LaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~e---GmTMivVTHEM-~FAr~VadrviFmd~G~iie~g~p~~~ 223 (240)
T COG1126 151 LAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEE---GMTMIIVTHEM-GFAREVADRVIFMDQGKIIEEGPPEEF 223 (240)
T ss_pred HcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHc---CCeEEEEechh-HHHHHhhheEEEeeCCEEEEecCHHHH
Confidence 99999999999999999999999999999999965 55999999996 689999999999999999999998765
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-56 Score=493.71 Aligned_cols=380 Identities=27% Similarity=0.456 Sum_probs=327.3
Q ss_pred cceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc--ccCcEEEEcCCCCCCCCCCHH
Q 044030 56 SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--AYGTSAYVTQDDTLITTLTVK 133 (449)
Q Consensus 56 ~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--~~~~i~yv~Q~~~l~~~lTv~ 133 (449)
..+|+|+|+-++||+++.++||+||||||||++|+|.++......|+|.+||.+.+. .++.++|++|+|.++|.|||+
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr 207 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR 207 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence 479999999999999999999999999999999999887644457899999987543 246799999999999999999
Q ss_pred HHHHHHHhccCCCC----CCHHHHH-HHHHHHHHHcCCchhhCccC-----CCCChHHHHHHHHHHHHHhCCCEEEEeCC
Q 044030 134 EAVYYSAQLQLPDT----MPKSDKK-ERAEVTIREMGLQDAMNTRI-----RRLSGGQKRRVSISIEILTRPKLLFLDEP 203 (449)
Q Consensus 134 e~l~~~~~~~~~~~----~~~~~~~-~~v~~~l~~lgL~~~~~~~~-----~~LSgGerqRv~ia~aL~~~P~llllDEP 203 (449)
|+|.|+++++.+.. .++.++. ...+.+++.+||++|+|+.+ +++||||||||++|.+++.+|+++++||+
T Consensus 208 eTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~ 287 (1391)
T KOG0065|consen 208 ETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEI 287 (1391)
T ss_pred ehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecc
Confidence 99999999987632 2233322 26789999999999999998 79999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHHHHHHHCCCCCCCCCC
Q 044030 204 TSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANEFFAFNGFPCPTHQN 283 (449)
Q Consensus 204 tsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~~~f~~~g~~~~~~~~ 283 (449)
|+|||+.++.++++.|+++++..+. |++++.|||+++++++||+|++|.+|+++|+||.+++.+||+++|+.||+..+
T Consensus 288 t~GLDSsTal~iik~lr~~a~~~~~--t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~ 365 (1391)
T KOG0065|consen 288 TRGLDSSTAFQIIKALRQLAHITGA--TALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKG 365 (1391)
T ss_pred cccccHHHHHHHHHHHHHHHhhhcc--eEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccC
Confidence 9999999999999999999988766 99999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHhhhhhhHhhhhccCCCCCCcHHHHHHHHHHHHhchhhHHHHHHHHHHhhhc---CCCcccCccCCCHHHHHH
Q 044030 284 PSDHFLKTINKDFQKEAEEGLADGEIPTEEVINILKRSYKSCGIYEQVGSQVAEICKQN---YGTLEKKRKHASFLTQCH 360 (449)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~---~~~~~~~~~~~s~~~q~~ 360 (449)
++|++.++.+ ...++.... ....+-......++.+.|.+++.+.++..++....... ......+++..++|.|++
T Consensus 366 ~ADfLt~vts-~k~~~~~~~-~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk 443 (1391)
T KOG0065|consen 366 TADFLTEVTS-KKDQEQYWN-KRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVK 443 (1391)
T ss_pred HHHHHHHhhc-Ccccccccc-ccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHH
Confidence 9997776654 222211111 11112222334678999999999988877765532211 112335678899999999
Q ss_pred HHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHhcCCC-CChhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 044030 361 VLTRRSFVNMYRDLGYYWFRLAIYISMALGLATLFSNLG-TGYRSIQARGSLLMFVASFITFMTIGGFPSFVEDMKKCLF 439 (449)
Q Consensus 361 ~l~~R~~~~~~Rd~~~~~~r~~~~~~~~li~G~~f~~~~-~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~er~~~~~ 439 (449)
+|++|.|..++||..++..++++.+++|+++|++||+.+ .+..+.+.|.|++||.+++.+|+++++++..++.|+||+|
T Consensus 444 ~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~K 523 (1391)
T KOG0065|consen 444 ACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPVFYK 523 (1391)
T ss_pred HHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHHH
Confidence 999999999999999999999999999999999999999 7788899999999999999999999999999999999987
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-54 Score=403.42 Aligned_cols=217 Identities=27% Similarity=0.440 Sum_probs=201.0
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
+++++|||+.| +++.+++|+||+|++||+++++|||||||||+||+|.+++.|+ +|+|++||+++..
T Consensus 1 MI~~~nvsk~y------~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept---~G~I~i~g~~i~~~d~~ 71 (309)
T COG1125 1 MIEFENVSKRY------GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLDPV 71 (309)
T ss_pred Cceeeeeehhc------CCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCC---CceEEECCeecccCCHH
Confidence 47899999983 5678999999999999999999999999999999999999874 9999999998642
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc--hhhCccCCCCChHHHHHHHHHH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ--DAMNTRIRRLSGGQKRRVSISI 189 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~~~~LSgGerqRv~ia~ 189 (449)
.++.||||-|...|||++||.||+.+...+. ++++++.+++++++|+.+||+ ++++++|++|||||+|||.+||
T Consensus 72 ~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~R 148 (309)
T COG1125 72 ELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVAR 148 (309)
T ss_pred HHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHH
Confidence 2467999999999999999999999988775 467788899999999999997 4899999999999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 190 EILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 190 aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
||+.+|++|+|||||++|||.++.++-+.++++.++.|+ |||++|||. +|+++++|||++|++|+++.+++|+++.
T Consensus 149 ALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~k--TivfVTHDi-dEA~kLadri~vm~~G~i~Q~~~P~~il 224 (309)
T COG1125 149 ALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGK--TIVFVTHDI-DEALKLADRIAVMDAGEIVQYDTPDEIL 224 (309)
T ss_pred HHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCC--EEEEEecCH-HHHHhhhceEEEecCCeEEEeCCHHHHH
Confidence 999999999999999999999999999999999988876 999999996 6899999999999999999999999875
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-53 Score=409.77 Aligned_cols=221 Identities=26% Similarity=0.423 Sum_probs=201.5
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
+|++++|++.| ..+..+...+|+|||++|++||++||+|.||||||||++||.++..|+ +|+|.++|.++..
T Consensus 1 mI~l~~vsK~~-~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pt---sG~v~v~G~di~~l~~~ 76 (339)
T COG1135 1 MIELENVSKTF-GQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLTALSEA 76 (339)
T ss_pred CeEEEeeeeee-ccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCC---CceEEEcCEecccCChH
Confidence 47899999984 322223467999999999999999999999999999999999999874 9999999987531
Q ss_pred ----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHH
Q 044030 113 ----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSIS 188 (449)
Q Consensus 113 ----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia 188 (449)
.++.||++||+++|+...||.||++|...+. +.++++.++++.++++.+||++.++.+|.+|||||||||+||
T Consensus 77 ~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeia---g~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIA 153 (339)
T COG1135 77 ELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELA---GVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIA 153 (339)
T ss_pred HHHHHHhhccEEeccccccccchHHhhhhhhHhhc---CCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHH
Confidence 2467999999999999999999999998875 467889999999999999999999999999999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 189 IEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 189 ~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
|||+.+|++|++|||||+|||.+...|+++|+++.++.|. ||+++||++ +-+.++||||++|++|+++..|+..++
T Consensus 154 RALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lgl--TIvlITHEm-~Vvk~ic~rVavm~~G~lvE~G~v~~v 229 (339)
T COG1135 154 RALANNPKILLCDEATSALDPETTQSILELLKDINRELGL--TIVLITHEM-EVVKRICDRVAVLDQGRLVEEGTVSEV 229 (339)
T ss_pred HHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCC--EEEEEechH-HHHHHHhhhheEeeCCEEEEeccHHHh
Confidence 9999999999999999999999999999999999988877 999999996 689999999999999999999998765
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-53 Score=397.96 Aligned_cols=205 Identities=31% Similarity=0.480 Sum_probs=188.9
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCc
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGT 116 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~ 116 (449)
.+.++++++.| +...+|+|+|++|.+||+++|+||||||||||||+|+|+.+|. +|+|.++|.+.......
T Consensus 3 ~l~i~~v~~~f------~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~---~G~V~~~g~~v~~p~~~ 73 (248)
T COG1116 3 LLEIEGVSKSF------GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVTGPGPD 73 (248)
T ss_pred eEEEEeeEEEe------CceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCcccCCCCCC
Confidence 57899999983 4478999999999999999999999999999999999999874 99999999987545567
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCC
Q 044030 117 SAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPK 196 (449)
Q Consensus 117 i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~ 196 (449)
++||||++.++|.+||.||+.|+.... +.++++.++++.++|+.+||.+..|++|++|||||||||+|||||+.+|+
T Consensus 74 ~~~vFQ~~~LlPW~Tv~~NV~l~l~~~---~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~ 150 (248)
T COG1116 74 IGYVFQEDALLPWLTVLDNVALGLELR---GKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPK 150 (248)
T ss_pred EEEEeccCcccchhhHHhhheehhhcc---ccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999998765 24566677799999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCC
Q 044030 197 LLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAG 256 (449)
Q Consensus 197 llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G 256 (449)
+|+||||+++||+.++..+.+.|.++.++.++ ||+++|||. +|+..++|||++|.++
T Consensus 151 lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~--TvllVTHdi-~EAv~LsdRivvl~~~ 207 (248)
T COG1116 151 LLLLDEPFGALDALTREELQDELLRLWEETRK--TVLLVTHDV-DEAVYLADRVVVLSNR 207 (248)
T ss_pred EEEEcCCcchhhHHHHHHHHHHHHHHHHhhCC--EEEEEeCCH-HHHHhhhCEEEEecCC
Confidence 99999999999999999999999999988766 999999997 5888999999999984
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-52 Score=391.44 Aligned_cols=220 Identities=30% Similarity=0.463 Sum_probs=201.8
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc--
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-- 112 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-- 112 (449)
...|++++|++++ |++.|++||||+|++||+++|+||||||||||||+|.|+++|+ +|+|+++|.++..
T Consensus 6 ~~~I~vr~v~~~f------G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~---~GeI~i~G~~i~~ls 76 (263)
T COG1127 6 EPLIEVRGVTKSF------GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLS 76 (263)
T ss_pred cceEEEeeeeeec------CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC---CCeEEEcCcchhccC
Confidence 4468999999982 7889999999999999999999999999999999999999885 9999999987521
Q ss_pred ------ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchh-hCccCCCCChHHHHHH
Q 044030 113 ------AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDA-MNTRIRRLSGGQKRRV 185 (449)
Q Consensus 113 ------~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~~~~LSgGerqRv 185 (449)
.++++|++||+..||..|||+||+.|..+-+ ..++++..++.+..-|+.+||... ++..|.+|||||+||+
T Consensus 77 ~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~--~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRv 154 (263)
T COG1127 77 EEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREH--TKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRV 154 (263)
T ss_pred HHHHHHHHhheeEEeeccccccccchhHhhheehHhh--ccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHH
Confidence 1357999999999999999999999987644 346788888889999999999877 9999999999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChh
Q 044030 186 SISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPAT 265 (449)
Q Consensus 186 ~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~ 265 (449)
+||||++.+|+|+|+||||+||||.++..+-++|+++.+..|. |++++|||. ++++.+||++++|.+|++++.|+++
T Consensus 155 aLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~--T~i~VTHDl-~s~~~i~Drv~~L~~gkv~~~Gt~~ 231 (263)
T COG1127 155 ALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGL--TVIMVTHDL-DSLLTIADRVAVLADGKVIAEGTPE 231 (263)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCC--EEEEEECCh-HHHHhhhceEEEEeCCEEEEeCCHH
Confidence 9999999999999999999999999999999999999988766 999999996 5899999999999999999999999
Q ss_pred hHH
Q 044030 266 AAN 268 (449)
Q Consensus 266 ~~~ 268 (449)
++.
T Consensus 232 el~ 234 (263)
T COG1127 232 ELL 234 (263)
T ss_pred HHH
Confidence 875
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-52 Score=401.61 Aligned_cols=220 Identities=31% Similarity=0.465 Sum_probs=196.5
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.|+++||++.| +++.+|+|+||++++||+++|+||||||||||||+|+|+++|. +|+|.++|+++..
T Consensus 2 ~L~~~~ls~~y------~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~---~G~V~l~g~~i~~~~~k 72 (258)
T COG1120 2 MLEVENLSFGY------GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPK 72 (258)
T ss_pred eeEEEEEEEEE------CCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCCchhhcCHH
Confidence 58999999983 5788999999999999999999999999999999999999874 8999999987632
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCC-CCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPD-TMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIE 190 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~a 190 (449)
..+.++||||.....+.+||+|.+.++...+... ....++.++.+++.|+.+|+.+.+++.+.+|||||||||.||||
T Consensus 73 elAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArA 152 (258)
T COG1120 73 ELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARA 152 (258)
T ss_pred HHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHH
Confidence 2367999999998888999999999986543221 12234445578999999999999999999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 191 ILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 191 L~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
|+++|++|+||||||.||...+.++++++++++++.|. |||+++||++ .+.++||++++|++|+++++|+|+++.
T Consensus 153 LaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~--tvv~vlHDlN-~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 153 LAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGL--TVVMVLHDLN-LAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCC--EEEEEecCHH-HHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999999977766 9999999985 789999999999999999999998764
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-52 Score=410.93 Aligned_cols=221 Identities=34% Similarity=0.557 Sum_probs=198.7
Q ss_pred eEEEEeeEEEEeecCccc-ccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 37 FLTWKDLTVTIVSNGKKG-SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
.++++||++.| + ++.+|+||||+|++||++||+||||||||||+|+|+|+..| ++|+|.++|.+...
T Consensus 4 ~i~~~~l~k~~------~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p---~~G~i~i~G~~~~~~~~ 74 (293)
T COG1131 4 VIEVRNLTKKY------GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP---TSGEILVLGYDVVKEPA 74 (293)
T ss_pred eeeecceEEEe------CCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC---CceEEEEcCEeCccCHH
Confidence 47889999983 5 57899999999999999999999999999999999999987 49999999987542
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEI 191 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL 191 (449)
.++++||+||++.+++.+||+|++.|.+.++.. +....+++++++++.+||.+..++++++||+|||||++||+||
T Consensus 75 ~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~---~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL 151 (293)
T COG1131 75 KVRRRIGYVPQEPSLYPELTVRENLEFFARLYGL---SKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALAL 151 (293)
T ss_pred HHHhheEEEccCCCCCccccHHHHHHHHHHHhCC---ChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHH
Confidence 245799999999999999999999999998743 2245567899999999999877899999999999999999999
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHHHHH
Q 044030 192 LTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANEFF 271 (449)
Q Consensus 192 ~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~~~f 271 (449)
+++|+++||||||+||||.++..++++|++++++.|. ||++|||++ +++..+||+|++|++|++++.|+++++...+
T Consensus 152 ~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~--tvlissH~l-~e~~~~~d~v~il~~G~~~~~g~~~~l~~~~ 228 (293)
T COG1131 152 LHDPELLILDEPTSGLDPESRREIWELLRELAKEGGV--TILLSTHIL-EEAEELCDRVIILNDGKIIAEGTPEELKEKF 228 (293)
T ss_pred hcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCc--EEEEeCCcH-HHHHHhCCEEEEEeCCEEEEeCCHHHHHHhh
Confidence 9999999999999999999999999999999976434 999999997 5899999999999999999999998876554
Q ss_pred H
Q 044030 272 A 272 (449)
Q Consensus 272 ~ 272 (449)
.
T Consensus 229 ~ 229 (293)
T COG1131 229 G 229 (293)
T ss_pred c
Confidence 3
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-52 Score=412.17 Aligned_cols=217 Identities=30% Similarity=0.488 Sum_probs=201.2
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---c
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---A 113 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---~ 113 (449)
.|+++||++.| |+..+|+|+|++|++||+++|+||||||||||||+|||+..|+ +|+|.++|++.+. .
T Consensus 3 ~i~l~~v~K~y------g~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~---~G~I~i~g~~vt~l~P~ 73 (338)
T COG3839 3 ELELKNVRKSF------GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPE 73 (338)
T ss_pred EEEEeeeEEEc------CCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChh
Confidence 68999999983 3333999999999999999999999999999999999999874 9999999998643 3
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh
Q 044030 114 YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT 193 (449)
Q Consensus 114 ~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~ 193 (449)
.+.+++|||+..|||+|||+||+.|+++.+ +.++++.++++.++.+.|+|++.+|+++.+|||||||||+|||||+.
T Consensus 74 ~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~---~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr 150 (338)
T COG3839 74 KRGIAMVFQNYALYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVR 150 (338)
T ss_pred HCCEEEEeCCccccCCCcHHHHhhhhhhhC---CCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhc
Confidence 478999999999999999999999998875 46778889999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
+|++++||||+|+||+..+..+...|+++.++.|. |+|++|||. .|+..++|||++|++|++...|+|.++-
T Consensus 151 ~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~--T~IYVTHDq-~EAmtladri~Vm~~G~i~Q~g~p~ely 222 (338)
T COG3839 151 KPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGT--TTIYVTHDQ-VEAMTLADRIVVMNDGRIQQVGTPLELY 222 (338)
T ss_pred CCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCC--cEEEEcCCH-HHHHhhCCEEEEEeCCeeeecCChHHHh
Confidence 99999999999999999999999999999988866 999999996 6899999999999999999999998774
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-52 Score=389.71 Aligned_cols=209 Identities=32% Similarity=0.492 Sum_probs=183.4
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecc------
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKA------ 111 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~------ 111 (449)
++++||++.| ..+. ....+|++|||+|++||+++|+|||||||||||++|.|+..| ++|.|.++|.+..
T Consensus 2 i~~~~v~k~y-~~~~-~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p---t~G~v~i~g~d~~~l~~~~ 76 (226)
T COG1136 2 IELKNVSKIY-GLGG-EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP---TSGEVLINGKDLTKLSEKE 76 (226)
T ss_pred cEEeeeEEEe-ccCC-cceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC---CCceEEECCEEcCcCCHHH
Confidence 5789999984 2221 226799999999999999999999999999999999999987 4999999997643
Q ss_pred ---cccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhC-ccCCCCChHHHHHHHH
Q 044030 112 ---LAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMN-TRIRRLSGGQKRRVSI 187 (449)
Q Consensus 112 ---~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-~~~~~LSgGerqRv~i 187 (449)
.+++.+|||||+..|+|++||.||+.+++.+. ..+....+++++++++.+||.+..+ ++|.+|||||||||+|
T Consensus 77 ~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~---~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAI 153 (226)
T COG1136 77 LAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIA---GKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAI 153 (226)
T ss_pred HHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHc---CCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHH
Confidence 12357999999999999999999999987654 2233356677899999999997766 8899999999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeE
Q 044030 188 SIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQT 258 (449)
Q Consensus 188 a~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~i 258 (449)
||||+++|++|++||||.+||+.+...|++++++++++.|. |||++|||+ ++...|||++.|.+|++
T Consensus 154 ARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~--tii~VTHd~--~lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 154 ARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGK--TIIMVTHDP--ELAKYADRVIELKDGKI 220 (226)
T ss_pred HHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCC--EEEEEcCCH--HHHHhCCEEEEEeCCee
Confidence 99999999999999999999999999999999999977766 999999996 68899999999999984
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-52 Score=415.37 Aligned_cols=218 Identities=27% Similarity=0.469 Sum_probs=201.4
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
..++++||++.| ++..+|+|+|++|++||+++|+|||||||||||++|+|+..|+ +|+|.++|+++..
T Consensus 4 ~~l~i~~v~k~y------g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~---~G~I~l~G~~i~~lpp 74 (352)
T COG3842 4 PALEIRNVSKSF------GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVPP 74 (352)
T ss_pred ceEEEEeeeeec------CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCh
Confidence 468999999983 5788999999999999999999999999999999999999875 9999999998642
Q ss_pred ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHH
Q 044030 113 AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEIL 192 (449)
Q Consensus 113 ~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~ 192 (449)
.++.+|+|||+..|||+|||.||+.|+++++ ....+++.++++.++++.++|++.+++++.+|||||||||+|||||+
T Consensus 75 ~kR~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~ 152 (352)
T COG3842 75 EKRPIGMVFQSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALV 152 (352)
T ss_pred hhcccceeecCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhh
Confidence 3578999999999999999999999998743 23445667889999999999999999999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 193 TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 193 ~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
.+|++||||||.|+||...+.++...|+++.++.|. |.|++|||. .|+..++|||++|++|+|...|+|+++
T Consensus 153 ~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~gi--T~i~VTHDq-eEAl~msDrI~Vm~~G~I~Q~gtP~ei 224 (352)
T COG3842 153 PEPKVLLLDEPLSALDAKLREQMRKELKELQRELGI--TFVYVTHDQ-EEALAMSDRIAVMNDGRIEQVGTPEEI 224 (352)
T ss_pred cCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCC--eEEEEECCH-HHHhhhccceEEccCCceeecCCHHHH
Confidence 999999999999999999999999999999988866 999999996 689999999999999999999999887
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-51 Score=380.54 Aligned_cols=223 Identities=30% Similarity=0.482 Sum_probs=197.7
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
++|+++||++.| + +++++|+||||+|++||+++|+|||||||||||++|+|+..+ ++|+|.+||.++..
T Consensus 2 ~~i~~~nl~k~y-p----~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~---t~G~i~~~g~~i~~~~~ 73 (258)
T COG3638 2 MMIEVKNLSKTY-P----GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDP---TSGEILFNGVQITKLKG 73 (258)
T ss_pred ceEEEeeeeeec-C----CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCC---CcceEEecccchhccch
Confidence 478999999983 3 678899999999999999999999999999999999999877 48999999976421
Q ss_pred -----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCC-----CCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHH
Q 044030 113 -----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPD-----TMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQK 182 (449)
Q Consensus 113 -----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGer 182 (449)
.++++||++|++.+.+.+||.+|+..+..-+.+. ++..++.+..+-+.|+.+|+.+.+-++...|||||+
T Consensus 74 k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQ 153 (258)
T COG3638 74 KELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQ 153 (258)
T ss_pred HHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchh
Confidence 1357999999999999999999998875433221 233345567788899999999999999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 183 RRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 183 qRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
|||+|||||+++|++||.|||+++|||.++.++|+.|++++++.|. |||++.|+. +.+.++|||++-|++|+++|.|
T Consensus 154 QRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~--Tvi~nLH~v-dlA~~Y~~Riigl~~G~ivfDg 230 (258)
T COG3638 154 QRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGI--TVIVNLHQV-DLAKKYADRIIGLKAGRIVFDG 230 (258)
T ss_pred HHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCC--EEEEEechH-HHHHHHHhhheEecCCcEEEeC
Confidence 9999999999999999999999999999999999999999988866 999999996 5789999999999999999999
Q ss_pred ChhhHHH
Q 044030 263 PATAANE 269 (449)
Q Consensus 263 ~~~~~~~ 269 (449)
+++++.+
T Consensus 231 ~~~el~~ 237 (258)
T COG3638 231 PASELTD 237 (258)
T ss_pred ChhhhhH
Confidence 9987643
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-50 Score=386.91 Aligned_cols=219 Identities=29% Similarity=0.458 Sum_probs=187.9
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc--
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA-- 113 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~-- 113 (449)
..++++|+++.| +..++|+||||++++|++++|+||||||||||+|+|+|+++|. +|+|.++|.+....
T Consensus 3 ~~i~v~nl~v~y------~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~---~G~i~~~g~~~~~~~~ 73 (254)
T COG1121 3 PMIEVENLTVSY------GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRK 73 (254)
T ss_pred cEEEEeeeEEEE------CCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---cceEEEcccccccccc
Confidence 368999999983 3226999999999999999999999999999999999999874 99999999875433
Q ss_pred cCcEEEEcCCCCC--CCCCCHHHHHHHHHhccCCC-CCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHH
Q 044030 114 YGTSAYVTQDDTL--ITTLTVKEAVYYSAQLQLPD-TMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIE 190 (449)
Q Consensus 114 ~~~i~yv~Q~~~l--~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~a 190 (449)
..+||||||...+ -..+||+|.+.++...+.+. ....+..++.+++.|+.+|+.+.+|+.+++|||||+|||.||||
T Consensus 74 ~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARA 153 (254)
T COG1121 74 RLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARA 153 (254)
T ss_pred CCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHH
Confidence 3579999996532 23369999999875433211 11223447889999999999999999999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 191 ILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 191 L~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
|+.+|++|+|||||+|+|+.++..++++|++++++ |+ ||++++||+ ..+.++||+|+.|+ +++++.|+++++.
T Consensus 154 L~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g~--tIl~vtHDL-~~v~~~~D~vi~Ln-~~~~~~G~~~~~~ 226 (254)
T COG1121 154 LAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-GK--TVLMVTHDL-GLVMAYFDRVICLN-RHLIASGPPEEVL 226 (254)
T ss_pred hccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-CC--EEEEEeCCc-HHhHhhCCEEEEEc-CeeEeccChhhcc
Confidence 99999999999999999999999999999999976 66 999999997 57999999999996 6788999998764
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-51 Score=392.79 Aligned_cols=220 Identities=27% Similarity=0.463 Sum_probs=200.4
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE---eccc
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH---KKAL 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~---~~~~ 112 (449)
++|.++|+++. + +...+++|||++|+.||++|++|||||||||||++|+|+..|+ +|.|.+||+ +.+.
T Consensus 1 m~i~i~~~~~~-~-----~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~---~G~I~~~~~~l~D~~~ 71 (345)
T COG1118 1 MSIRINNVKKR-F-----GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVSN 71 (345)
T ss_pred Cceeehhhhhh-c-----ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCC---CceEEECCEeccchhc
Confidence 46788899887 2 5678999999999999999999999999999999999999885 999999998 4332
Q ss_pred ---ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHH
Q 044030 113 ---AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISI 189 (449)
Q Consensus 113 ---~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~ 189 (449)
..++||||+|+..+|++|||.+|+.|+.+.+ ....++.+.+.++.++|+.+.|++..+++|..|||||||||++||
T Consensus 72 ~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALAR 150 (345)
T COG1118 72 LAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALAR 150 (345)
T ss_pred cchhhcceeEEEechhhcccchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHH
Confidence 2468999999999999999999999998776 223456678889999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 190 EILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 190 aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
||+.+|++|+||||+++||...+..+.+.|+++.++.|. |++++|||+ ++++++||||++|++|+|...|+++++-
T Consensus 151 ALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~--ttvfVTHD~-eea~~ladrvvvl~~G~Ieqvg~p~ev~ 226 (345)
T COG1118 151 ALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGV--TTVFVTHDQ-EEALELADRVVVLNQGRIEQVGPPDEVY 226 (345)
T ss_pred HhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCc--eEEEEeCCH-HHHHhhcceEEEecCCeeeeeCCHHHHh
Confidence 999999999999999999999999999999999987776 999999996 6899999999999999999999998874
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-51 Score=371.93 Aligned_cols=218 Identities=29% Similarity=0.428 Sum_probs=198.0
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecc----c
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKA----L 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~----~ 112 (449)
+|++++++++| . ...++++||||+++.||++||+|||||||||+|++|++++.|+ +|.|+++|.+.. .
T Consensus 1 Ml~v~~l~K~y-~----~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~---~G~v~idg~d~~~~p~~ 72 (245)
T COG4555 1 MLEVTDLTKSY-G----SKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVRDPSF 72 (245)
T ss_pred Ceeeeehhhhc-c----CHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC---CceEEEeecccccChHH
Confidence 47889999983 1 2345999999999999999999999999999999999999885 999999998642 2
Q ss_pred ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHH
Q 044030 113 AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEIL 192 (449)
Q Consensus 113 ~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~ 192 (449)
.+++||.++.+..+|..||++|||.|.++++ +++..+.+++++++.+.|+|.+++|++++++|.||||||+|||||+
T Consensus 73 vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlv 149 (245)
T COG4555 73 VRRKIGVLFGERGLYARLTARENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALV 149 (245)
T ss_pred HhhhcceecCCcChhhhhhHHHHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHh
Confidence 3467999998899999999999999999886 5677888899999999999999999999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHHH
Q 044030 193 TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANE 269 (449)
Q Consensus 193 ~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~~ 269 (449)
++|++++|||||||||..+...+.+.++++.+ .|+ +||++||.+ +++..+||+|++|++|++++.|+++++..
T Consensus 150 h~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~-egr--~viFSSH~m-~EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 150 HDPSILVLDEPTSGLDIRTRRKFHDFIKQLKN-EGR--AVIFSSHIM-QEVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred cCCCeEEEcCCCCCccHHHHHHHHHHHHHhhc-CCc--EEEEecccH-HHHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 99999999999999999999999999999984 444 999999996 68999999999999999999999987654
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-49 Score=395.36 Aligned_cols=217 Identities=27% Similarity=0.426 Sum_probs=194.3
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.++++||++.| +++.+|+||||+|++||++||+||||||||||+++|+|+++|+ +|+|.++|.+...
T Consensus 7 ~i~i~~l~k~~------~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~---~G~v~i~G~~~~~~~~~ 77 (306)
T PRK13537 7 PIDFRNVEKRY------GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCGEPVPSRARH 77 (306)
T ss_pred eEEEEeEEEEE------CCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEecccchHH
Confidence 68999999983 4567999999999999999999999999999999999999874 8999999987532
Q ss_pred ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHH
Q 044030 113 AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEIL 192 (449)
Q Consensus 113 ~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~ 192 (449)
.++.+||+||++.+++.+||+||+.|.+.++ +.+..+..+++.++++.++|.+..++++++||||||||++||+||+
T Consensus 78 ~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~ 154 (306)
T PRK13537 78 ARQRVGVVPQFDNLDPDFTVRENLLVFGRYF---GLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALV 154 (306)
T ss_pred HHhcEEEEeccCcCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHh
Confidence 2357999999999999999999999876654 2334455567889999999999999999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHHH
Q 044030 193 TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANE 269 (449)
Q Consensus 193 ~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~~ 269 (449)
++|++|||||||+|||+.++..+++.|+++++ .|. |||++||++ +++.++||++++|++|++++.|+++++..
T Consensus 155 ~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~--till~sH~l-~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 155 NDPDVLVLDEPTTGLDPQARHLMWERLRSLLA-RGK--TILLTTHFM-EEAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred CCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCC--EEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999974 455 999999996 58999999999999999999999987754
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-49 Score=397.66 Aligned_cols=220 Identities=24% Similarity=0.399 Sum_probs=194.6
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
+|+++||++.| .. ..+.+.+|+||||+|++||+++|+||||||||||+++|+|+.+|+ +|+|.++|.++..
T Consensus 1 mI~~~~lsk~y-~~-~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~---~G~I~i~G~~i~~~~~~ 75 (343)
T TIGR02314 1 MIKLSNITKVF-HQ-GTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTTLSNS 75 (343)
T ss_pred CEEEEEEEEEE-CC-CCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHH
Confidence 37899999983 21 112357999999999999999999999999999999999999874 8999999987532
Q ss_pred ----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHH
Q 044030 113 ----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSIS 188 (449)
Q Consensus 113 ----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia 188 (449)
.++.++|+||+..+++.+||+||+.++.... +.+.++.++++.++++.+||.+..++++.+|||||||||+||
T Consensus 76 ~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IA 152 (343)
T TIGR02314 76 ELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIA 152 (343)
T ss_pred HHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHH
Confidence 1357999999999999999999999976542 234556667889999999999999999999999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 189 IEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 189 ~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
|||+.+|++||||||||+||+.++..+++.|++++++.|. |||++||++ +.+.++||++++|++|++++.|+++++
T Consensus 153 RAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~--tiiliTH~~-~~v~~~~d~v~vl~~G~iv~~g~~~~v 228 (343)
T TIGR02314 153 RALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGL--TILLITHEM-DVVKRICDCVAVISNGELIEQGTVSEI 228 (343)
T ss_pred HHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999876666 999999996 578899999999999999999998776
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-49 Score=399.09 Aligned_cols=218 Identities=27% Similarity=0.432 Sum_probs=195.9
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---c
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---A 113 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---~ 113 (449)
.|+++||++.| . +++.+|+|+||++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|++... .
T Consensus 3 ~l~i~~l~~~~-~----~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~ 74 (356)
T PRK11650 3 GLKLQAVRKSY-D----GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERIT---SGEIWIGGRVVNELEPA 74 (356)
T ss_pred EEEEEeEEEEe-C----CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHH
Confidence 48999999983 1 3467999999999999999999999999999999999999874 8999999987632 2
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh
Q 044030 114 YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT 193 (449)
Q Consensus 114 ~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~ 193 (449)
.+.++||+|++.+||++||+||+.|+.+.+ ..+..+.+++++++++.+||.+.+++++.+|||||||||+|||||+.
T Consensus 75 ~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~ 151 (356)
T PRK11650 75 DRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVR 151 (356)
T ss_pred HCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 367999999999999999999999987543 23455566789999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
+|++|||||||++||+.++..+.+.|+++.++.|. |+|++|||+ .++..+||++++|++|+++..|+++++.
T Consensus 152 ~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~--tii~vTHd~-~ea~~l~D~i~vl~~G~i~~~g~~~~~~ 223 (356)
T PRK11650 152 EPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKT--TSLYVTHDQ-VEAMTLADRVVVMNGGVAEQIGTPVEVY 223 (356)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC--EEEEEeCCH-HHHHHhCCEEEEEeCCEEEEECCHHHHH
Confidence 99999999999999999999999999999876666 999999996 5799999999999999999999998763
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-49 Score=398.12 Aligned_cols=217 Identities=28% Similarity=0.441 Sum_probs=196.8
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---c
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---A 113 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---~ 113 (449)
.|+++||++.| +++.+|+|+||++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|++... .
T Consensus 4 ~l~~~~l~~~~------~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~ 74 (353)
T TIGR03265 4 YLSIDNIRKRF------GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT---AGTIYQGGRDITRLPPQ 74 (353)
T ss_pred EEEEEEEEEEe------CCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHH
Confidence 58999999983 3467999999999999999999999999999999999999774 8999999987532 2
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh
Q 044030 114 YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT 193 (449)
Q Consensus 114 ~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~ 193 (449)
.+.++||||+..+||++||+||+.|+...+ ..+..+.+++++++++.+||++.+++++.+|||||||||+|||||+.
T Consensus 75 ~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~ 151 (353)
T TIGR03265 75 KRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALAT 151 (353)
T ss_pred HCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhc
Confidence 367999999999999999999999987643 24456667789999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
+|+++||||||++||+.++..+.+.|+++.++.|. |+|++|||+ .++..+||++++|++|++++.|+++++.
T Consensus 152 ~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~--tvi~vTHd~-~ea~~l~d~i~vl~~G~i~~~g~~~~~~ 223 (353)
T TIGR03265 152 SPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGV--TTIMVTHDQ-EEALSMADRIVVMNHGVIEQVGTPQEIY 223 (353)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCC--EEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999876666 999999996 5899999999999999999999998764
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-48 Score=395.87 Aligned_cols=217 Identities=28% Similarity=0.490 Sum_probs=196.8
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---c
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---A 113 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---~ 113 (449)
.|+++||++.| +++.+|+|+||++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|.++.. .
T Consensus 6 ~l~~~~l~~~~------~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~ 76 (351)
T PRK11432 6 FVVLKNITKRF------GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT---EGQIFIDGEDVTHRSIQ 76 (351)
T ss_pred EEEEEeEEEEE------CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHH
Confidence 68999999983 3467999999999999999999999999999999999999874 9999999987532 2
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh
Q 044030 114 YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT 193 (449)
Q Consensus 114 ~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~ 193 (449)
.+.++||+|+..+||++||+||+.|+...+ ..++.+.+++++++++.+||.+..++++.+|||||||||+|||||+.
T Consensus 77 ~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~ 153 (351)
T PRK11432 77 QRDICMVFQSYALFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALIL 153 (351)
T ss_pred HCCEEEEeCCcccCCCCCHHHHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHc
Confidence 367999999999999999999999987653 24456667789999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
+|++|||||||+|||+.++..+.+.|+++.++.|. |+|++|||+ .++..+||++++|++|+++..|+++++.
T Consensus 154 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~--tii~vTHd~-~e~~~laD~i~vm~~G~i~~~g~~~~~~ 225 (351)
T PRK11432 154 KPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNI--TSLYVTHDQ-SEAFAVSDTVIVMNKGKIMQIGSPQELY 225 (351)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCC--EEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999876666 999999996 5899999999999999999999998763
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-49 Score=368.96 Aligned_cols=220 Identities=30% Similarity=0.454 Sum_probs=191.9
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
+.|+++|+++.| . ++.....+|+||||+|.+||++||+|+||||||||.++|+|+.+|+ +|+|.++|.+...
T Consensus 2 ~~l~v~nl~~~y-~-~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~---~G~I~~~G~~~~~~~~ 76 (252)
T COG1124 2 TLLSVRNLSIVY-G-GGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKPLAPKKR 76 (252)
T ss_pred ceEEEeceEEEe-c-CCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC---CceEEECCcccCcccc
Confidence 468999999983 2 1112236999999999999999999999999999999999999884 9999999976432
Q ss_pred ---ccCcEEEEcCCC--CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccCCCCChHHHHHHH
Q 044030 113 ---AYGTSAYVTQDD--TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSGGQKRRVS 186 (449)
Q Consensus 113 ---~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGerqRv~ 186 (449)
.++.+-+||||+ .+.|..||++.|.-+.... +.++. ++++.++++.+||. +.+++++.+|||||+||++
T Consensus 77 ~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~---~~~~~--~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRia 151 (252)
T COG1124 77 AKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPH---GLSKS--QQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIA 151 (252)
T ss_pred chhhccceeEEecCCccccCcchhHHHHHhhhhccC---CccHH--HHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHH
Confidence 246789999997 5789999999998776542 33333 34489999999996 6889999999999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhh
Q 044030 187 ISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATA 266 (449)
Q Consensus 187 ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~ 266 (449)
|||||+.+|++||||||||+||+..+.+|+++|.+++++.+. |.|++|||. ..+..+|||+++|++|+++..++..+
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~l--t~l~IsHdl-~~v~~~cdRi~Vm~~G~ivE~~~~~~ 228 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGL--TYLFISHDL-ALVEHMCDRIAVMDNGQIVEIGPTEE 228 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCc--eEEEEeCcH-HHHHHHhhheeeeeCCeEEEeechhh
Confidence 999999999999999999999999999999999999988766 999999996 58999999999999999999999987
Q ss_pred HH
Q 044030 267 AN 268 (449)
Q Consensus 267 ~~ 268 (449)
+.
T Consensus 229 l~ 230 (252)
T COG1124 229 LL 230 (252)
T ss_pred hh
Confidence 74
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-48 Score=374.51 Aligned_cols=216 Identities=31% Similarity=0.469 Sum_probs=188.7
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
|+++|+++.| +++.+|+|+||++++||+++|+||||||||||+|+|+|+++|. +|+|.++|.+...
T Consensus 1 l~~~~l~~~~------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~ 71 (235)
T cd03261 1 IELRGLTKSF------GGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEAE 71 (235)
T ss_pred CeEEEEEEEE------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccChhh
Confidence 4689999983 3457999999999999999999999999999999999999774 8999999987531
Q ss_pred ---ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHH
Q 044030 113 ---AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISI 189 (449)
Q Consensus 113 ---~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~ 189 (449)
.++.++|++|++.+++.+||.||+.++..... ..+..+..+++.++++.+||.+..++++.+|||||||||+||+
T Consensus 72 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~ 149 (235)
T cd03261 72 LYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALAR 149 (235)
T ss_pred HHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHH
Confidence 13469999999999999999999988754321 1234445567889999999999899999999999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 190 EILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 190 aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
||+.+|+++||||||+|||+.++..+++.|++++++.|. |||++||++ .++..+||++++|++|++++.|+++++
T Consensus 150 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~--tvi~vsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 224 (235)
T cd03261 150 ALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGL--TSIMVTHDL-DTAFAIADRIAVLYDGKIVAEGTPEEL 224 (235)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCc--EEEEEecCH-HHHHHhcCEEEEEECCeEEEecCHHHH
Confidence 999999999999999999999999999999999854455 999999996 578899999999999999999988754
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-48 Score=395.36 Aligned_cols=217 Identities=31% Similarity=0.458 Sum_probs=195.7
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCce--eEEEECCEeccc--
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQT--GKILINGHKKAL-- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~--G~I~~~g~~~~~-- 112 (449)
.|+++||++.| +++.+|+|+||++++||+++|+|||||||||||++|+|+.+|+ + |+|.++|++...
T Consensus 5 ~l~~~~l~~~~------~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~~~G~i~~~g~~~~~~~ 75 (362)
T TIGR03258 5 GIRIDHLRVAY------GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA---GLTGRIAIADRDLTHAP 75 (362)
T ss_pred EEEEEEEEEEE------CCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCCEEEEECCEECCCCC
Confidence 48899999983 3457999999999999999999999999999999999999874 7 999999987532
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEI 191 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL 191 (449)
..+.++||+|+..+||.+||+||+.|+...+ ..+..+.+++++++++.+||++..++++++|||||||||+|||||
T Consensus 76 ~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL 152 (362)
T TIGR03258 76 PHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAI 152 (362)
T ss_pred HHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHH
Confidence 2367999999999999999999999987643 244556667899999999999999999999999999999999999
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhc-CCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 192 LTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRD-GIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 192 ~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~-g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
+.+|++|||||||+|||+..+..+.+.|+++.++. |. |+|++|||+ +++..+||+|++|++|+++..|+++++.
T Consensus 153 ~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~--til~vTHd~-~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 153 AIEPDVLLLDEPLSALDANIRANMREEIAALHEELPEL--TILCVTHDQ-DDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred hcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999998664 56 999999996 5899999999999999999999998774
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-49 Score=355.94 Aligned_cols=212 Identities=28% Similarity=0.435 Sum_probs=192.1
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
+|+|+||++.| . +++++|+||||+|++||++-|+||||||||||||+|++...| ++|+|+++|.++..
T Consensus 1 mI~f~~V~k~Y-~----~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~p---t~G~i~~~~~dl~~l~~~ 72 (223)
T COG2884 1 MIRFENVSKAY-P----GGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERP---TRGKILVNGHDLSRLKGR 72 (223)
T ss_pred Ceeehhhhhhc-C----CCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcC---CCceEEECCeeccccccc
Confidence 47899999984 2 447799999999999999999999999999999999999887 49999999987531
Q ss_pred ----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHH
Q 044030 113 ----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSIS 188 (449)
Q Consensus 113 ----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia 188 (449)
.+++||+||||..+.++.||+||++|+++.. +.+..+.++++.++|+.+||.+.++..|.+|||||||||+||
T Consensus 73 ~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~---G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIA 149 (223)
T COG2884 73 EIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIA 149 (223)
T ss_pred ccchhhheeeeEeeeccccccchHhhhhhhhhhcc---CCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHH
Confidence 2468999999999999999999999998775 567788899999999999999999999999999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 189 IEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 189 ~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
||++.+|++|+.||||.+|||..+..|++++.++.+ .| .||+++|||. ..+..+-.+++.|++|+++....
T Consensus 150 RAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr-~G--tTVl~ATHd~-~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 150 RAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR-LG--TTVLMATHDL-ELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh-cC--cEEEEEeccH-HHHHhccCcEEEEeCCEEEeccc
Confidence 999999999999999999999999999999999984 44 4999999994 56777888999999999987653
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-48 Score=395.70 Aligned_cols=219 Identities=25% Similarity=0.433 Sum_probs=196.6
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc--
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-- 112 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-- 112 (449)
...|+++|+++.| +++.+|+|+||++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|++...
T Consensus 12 ~~~L~l~~l~~~~------~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~ 82 (375)
T PRK09452 12 SPLVELRGISKSF------DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVP 82 (375)
T ss_pred CceEEEEEEEEEE------CCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCC
Confidence 3468999999983 3467999999999999999999999999999999999999874 8999999987532
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEI 191 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL 191 (449)
..+.++||||+..+||++||.||+.|+...+ ..+..+.+++++++++.+||.+..++++.+|||||||||+|||||
T Consensus 83 ~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL 159 (375)
T PRK09452 83 AENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAV 159 (375)
T ss_pred HHHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 2367999999999999999999999986543 234555567889999999999999999999999999999999999
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 192 LTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 192 ~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
+.+|++|||||||+|||+.++..+.+.|++++++.|. |+|++|||+ .++..++|++++|++|+++..|+++++.
T Consensus 160 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~--tiI~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~i~ 233 (375)
T PRK09452 160 VNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGI--TFVFVTHDQ-EEALTMSDRIVVMRDGRIEQDGTPREIY 233 (375)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999999876666 999999996 5899999999999999999999998763
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-48 Score=393.44 Aligned_cols=221 Identities=23% Similarity=0.366 Sum_probs=195.8
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
+.|+++||++.| +++.+|+|+||+|++||+++|+|||||||||||++|+|+++|+ +|+|+++|++...
T Consensus 1 ~~L~i~~l~~~~------~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~ 71 (353)
T PRK10851 1 MSIEIANIKKSF------GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLHA 71 (353)
T ss_pred CEEEEEEEEEEe------CCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCH
Confidence 458999999983 3467999999999999999999999999999999999999774 8999999987632
Q ss_pred ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCC-CCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHH
Q 044030 113 AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLP-DTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEI 191 (449)
Q Consensus 113 ~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL 191 (449)
..+.++||+|++.++|.+||.||+.|+...... ...+.++.++++.++++.++|.+..++++.+|||||||||+|||||
T Consensus 72 ~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL 151 (353)
T PRK10851 72 RDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARAL 151 (353)
T ss_pred HHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 235799999999999999999999998654211 1234455667899999999999999999999999999999999999
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 192 LTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 192 ~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
+.+|++|||||||+|||+.++..+.+.|++++++.|. |+|++||++ .++..+||++++|++|++++.|+++++.
T Consensus 152 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~--tii~vTHd~-~ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 152 AVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKF--TSVFVTHDQ-EEAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999999866566 999999996 5899999999999999999999998764
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-48 Score=391.65 Aligned_cols=219 Identities=28% Similarity=0.433 Sum_probs=194.7
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc--
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-- 112 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-- 112 (449)
...|+++||++.| +++.+|+||||+|++||++||+||||||||||+++|+|+++|+ +|+|.++|.+...
T Consensus 39 ~~~i~i~nl~k~y------~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~---~G~i~i~G~~~~~~~ 109 (340)
T PRK13536 39 TVAIDLAGVSKSY------GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITVLGVPVPARA 109 (340)
T ss_pred ceeEEEEEEEEEE------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---ceEEEECCEECCcch
Confidence 3569999999983 4567999999999999999999999999999999999999874 8999999987532
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHH
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIE 190 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~a 190 (449)
.++.+||+||++.+++.+||.||+.+....+ ..+..+..++++++++.++|.+..++++++|||||||||+||+|
T Consensus 110 ~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~a 186 (340)
T PRK13536 110 RLARARIGVVPQFDNLDLEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARA 186 (340)
T ss_pred HHHhccEEEEeCCccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHH
Confidence 2357999999999999999999999766544 22334455678889999999999999999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHHH
Q 044030 191 ILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANE 269 (449)
Q Consensus 191 L~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~~ 269 (449)
|+++|+++||||||+|||+.++..+++.|+++++ .|. |||++||++ +++.++||+|++|++|++++.|+++++..
T Consensus 187 L~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~-~g~--tilisSH~l-~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 187 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGK--TILLTTHFM-EEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCC--EEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999985 455 999999996 58999999999999999999999988754
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-49 Score=360.06 Aligned_cols=217 Identities=25% Similarity=0.424 Sum_probs=191.3
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeccc-
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLG--SDTRQTGKILINGHKKAL- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~--~~~~~~G~I~~~g~~~~~- 112 (449)
..++++||++.| +.+.+|+|||+.|++++++|+||||||||||||+++..+.. |....+|+|.++|+++-.
T Consensus 6 ~~~~~~~l~~yY------g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~ 79 (253)
T COG1117 6 PAIEVRDLNLYY------GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDP 79 (253)
T ss_pred ceeEecceeEEE------CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCC
Confidence 468999999973 67899999999999999999999999999999999998764 334568999999987521
Q ss_pred ------ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCC----chhhCccCCCCChHHH
Q 044030 113 ------AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGL----QDAMNTRIRRLSGGQK 182 (449)
Q Consensus 113 ------~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL----~~~~~~~~~~LSgGer 182 (449)
.++++|+|||.+..|| +|++||+.|+.+++ +...++.++.++..|+...| .+.+++...+|||||+
T Consensus 80 ~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~---g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQ 155 (253)
T COG1117 80 KVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLH---GIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQ 155 (253)
T ss_pred CCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhh---ccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHH
Confidence 2467999999999999 89999999999876 23336677888888888877 3567788899999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 183 RRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 183 qRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
||++|||||+.+|+|||||||||+|||.+...|-++|.+|+++ -|||++||.+ ..+.+..|+..++..|+++++|
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~----yTIviVTHnm-qQAaRvSD~taFf~~G~LvE~g 230 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKK----YTIVIVTHNM-QQAARVSDYTAFFYLGELVEFG 230 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhc----cEEEEEeCCH-HHHHHHhHhhhhhcccEEEEEc
Confidence 9999999999999999999999999999999999999999853 3999999996 6899999999999999999999
Q ss_pred ChhhH
Q 044030 263 PATAA 267 (449)
Q Consensus 263 ~~~~~ 267 (449)
+++++
T Consensus 231 ~T~~i 235 (253)
T COG1117 231 PTDKI 235 (253)
T ss_pred CHHhh
Confidence 99866
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-48 Score=366.91 Aligned_cols=214 Identities=29% Similarity=0.467 Sum_probs=188.1
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----c
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----A 113 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----~ 113 (449)
|+++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+... .
T Consensus 1 i~~~~~~~~~------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~ 71 (220)
T cd03265 1 IEVENLVKKY------GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREV 71 (220)
T ss_pred CEEEEEEEEE------CCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecCcChHHH
Confidence 4689999983 3467999999999999999999999999999999999998774 8999999986531 1
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh
Q 044030 114 YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT 193 (449)
Q Consensus 114 ~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~ 193 (449)
.+.++|++|++.+++.+||+||+.+....+ .....+.++++.++++.+||.+..++++.+|||||||||+||+||+.
T Consensus 72 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~ 148 (220)
T cd03265 72 RRRIGIVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVH 148 (220)
T ss_pred hhcEEEecCCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 246999999999999999999999876543 22334455678999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhh
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATA 266 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~ 266 (449)
+|++++|||||+|||+.++..+.+.|++++++.|. |||++||++ +++..+||++++|++|+++..|++++
T Consensus 149 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~--tvi~~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 149 RPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGM--TILLTTHYM-EEAEQLCDRVAIIDHGRIIAEGTPEE 218 (220)
T ss_pred CCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCC--EEEEEeCCH-HHHHHhCCEEEEEeCCEEEEeCChHH
Confidence 99999999999999999999999999999865455 999999996 57889999999999999999988764
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-48 Score=383.14 Aligned_cols=218 Identities=28% Similarity=0.435 Sum_probs=191.7
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
+.|+++||++.| +++.+|+|+||++++||++||+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 3 ~~i~~~~l~~~~------~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~ 73 (303)
T TIGR01288 3 VAIDLVGVSKSY------GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITVLGEPVPSRAR 73 (303)
T ss_pred cEEEEEeEEEEe------CCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcccHH
Confidence 468999999983 3467999999999999999999999999999999999998774 8999999987531
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEI 191 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL 191 (449)
.++.++|++|++.+++.+||+||+.+....+ ..+..+.+++++++++.++|.+..++++++|||||||||+||+||
T Consensus 74 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al 150 (303)
T TIGR01288 74 LARVAIGVVPQFDNLDPEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARAL 150 (303)
T ss_pred HHhhcEEEEeccccCCcCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHH
Confidence 1356999999999999999999998755432 223344456678899999999999999999999999999999999
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHHH
Q 044030 192 LTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANE 269 (449)
Q Consensus 192 ~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~~ 269 (449)
+.+|+++||||||+|||+.++..+++.|+++++ .|. |||++||++ +++.++||++++|++|++++.|+++++..
T Consensus 151 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~--til~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 151 INDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGK--TILLTTHFM-EEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCC--EEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999975 455 999999997 57889999999999999999999987643
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-48 Score=365.80 Aligned_cols=217 Identities=31% Similarity=0.473 Sum_probs=186.9
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcE
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTS 117 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i 117 (449)
|+++|+++.| . +..+.+.+|+|+||+|++|++++|+||||||||||+++|+|+.+| .+|+|.++|.+.....+.+
T Consensus 1 l~~~~l~~~~-~-~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~i 75 (220)
T cd03293 1 LEVRNVSKTY-G-GGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERP---TSGEVLVDGEPVTGPGPDR 75 (220)
T ss_pred CeEEEEEEEc-C-CCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEECccccCcE
Confidence 4689999983 2 101115799999999999999999999999999999999999877 4899999998764334579
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCE
Q 044030 118 AYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKL 197 (449)
Q Consensus 118 ~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~l 197 (449)
+|++|++.+++.+|++||+.+....+ ........+.+.++++.+|+.+..++++.+||||||||++||+||+.+|++
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~l 152 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQ---GVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDV 152 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 99999999999999999998875433 223344456788999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEee--CCeEEEecChh
Q 044030 198 LFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLS--AGQTVYFGPAT 265 (449)
Q Consensus 198 lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~--~G~iv~~g~~~ 265 (449)
+||||||+|||+.++..+++.|++++++.|. |||++||++ .++..+||++++|+ +|+++..++.+
T Consensus 153 llLDEPt~~LD~~~~~~~~~~l~~~~~~~~~--tiii~sH~~-~~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 153 LLLDEPFSALDALTREQLQEELLDIWRETGK--TVLLVTHDI-DEAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHcCC--EEEEEecCH-HHHHHhCCEEEEEECCCCEEEEEEEec
Confidence 9999999999999999999999999755555 999999997 46889999999999 79999887653
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-48 Score=365.05 Aligned_cols=210 Identities=35% Similarity=0.546 Sum_probs=183.8
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---cc
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---AY 114 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---~~ 114 (449)
++++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+... ..
T Consensus 1 l~~~~l~~~~------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~ 71 (213)
T cd03259 1 LELKGLSKTY------GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPER 71 (213)
T ss_pred CeeeeeEEEe------CCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcCcCchhh
Confidence 4688999983 3457999999999999999999999999999999999998774 8999999987532 23
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhC
Q 044030 115 GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTR 194 (449)
Q Consensus 115 ~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~ 194 (449)
+.++|++|++.+++.+|++||+.+..... ........+++.++++.+|+.+..++++.+||||||||++||+||+.+
T Consensus 72 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~ 148 (213)
T cd03259 72 RNIGMVFQDYALFPHLTVAENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALARE 148 (213)
T ss_pred ccEEEEcCchhhccCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcC
Confidence 56999999999999999999998875432 123344456788999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 195 PKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 195 P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
|+++||||||+|||+.++..+++.|++++++.|. |||++||++ .++.++||++++|++|++++.|
T Consensus 149 p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~--tii~~sH~~-~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 149 PSLLLLDEPLSALDAKLREELREELKELQRELGI--TTIYVTHDQ-EEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCC--EEEEEecCH-HHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999865555 999999996 5788999999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-48 Score=370.71 Aligned_cols=218 Identities=28% Similarity=0.448 Sum_probs=194.8
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecc-----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKA----- 111 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~----- 111 (449)
.+.++|++++| . +...+|+|+|+++++||.++|+||||||||||+++|+|+++|. +|.|.++|.+..
T Consensus 3 ~i~~~~l~~~y-~----~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~---~G~v~~~g~~~~~~~~~ 74 (235)
T COG1122 3 MIEAENLSFRY-P----GRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSL 74 (235)
T ss_pred eEEEEEEEEEc-C----CCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCC---CCEEEECCeeccchhhH
Confidence 57899999983 2 2268999999999999999999999999999999999999884 899999998743
Q ss_pred -cccCcEEEEcCCCC-CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHH
Q 044030 112 -LAYGTSAYVTQDDT-LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISI 189 (449)
Q Consensus 112 -~~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~ 189 (449)
..++.+|||+|++. .+..-||.|.+.|+.... +.+.++.+++++++++.+|+.+.+++.+..|||||||||+||.
T Consensus 75 ~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~ 151 (235)
T COG1122 75 LELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAG 151 (235)
T ss_pred HHhhcceEEEEECcccccccCcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhH
Confidence 12467999999973 344559999999998654 5667778899999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 190 EILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 190 aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
+|+.+|++|+|||||||||+..+..+++.++++.++.|+ |||++|||. +.+..+||++++|++|+++++|+|.++.
T Consensus 152 vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~--tii~~tHd~-~~~~~~ad~v~vl~~G~i~~~g~p~~i~ 227 (235)
T COG1122 152 VLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGK--TIIIVTHDL-ELVLEYADRVVVLDDGKILADGDPAEIF 227 (235)
T ss_pred HHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCC--eEEEEeCcH-HHHHhhCCEEEEEECCEEeecCCHHHHh
Confidence 999999999999999999999999999999999976555 999999996 6899999999999999999999987654
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-47 Score=369.28 Aligned_cols=220 Identities=24% Similarity=0.404 Sum_probs=189.9
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
+.++++||++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++| .+|+|.++|.+...
T Consensus 1 ~~l~~~~l~~~~------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~ 71 (239)
T cd03296 1 MSIEVRNVSKRF------GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERP---DSGTILFGGEDATDVPV 71 (239)
T ss_pred CEEEEEeEEEEE------CCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEECCcCCc
Confidence 358999999983 345799999999999999999999999999999999999877 48999999987532
Q ss_pred ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCC-CCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHH
Q 044030 113 AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLP-DTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEI 191 (449)
Q Consensus 113 ~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL 191 (449)
..+.++|++|++.+++.+||.||+.++...... ......+..+++.++++.+||.+..++++.+|||||||||+||+||
T Consensus 72 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al 151 (239)
T cd03296 72 QERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARAL 151 (239)
T ss_pred cccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHH
Confidence 235699999999999999999999887543210 0012233445688999999999999999999999999999999999
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 192 LTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 192 ~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
+.+|+++||||||+|||+.++..+.+.|++++++.|. |||++||++ .++..+||++++|++|++++.|+++++
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~--tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 224 (239)
T cd03296 152 AVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHV--TTVFVTHDQ-EEALEVADRVVVMNKGRIEQVGTPDEV 224 (239)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCC--EEEEEeCCH-HHHHHhCCEEEEEECCeEEEecCHHHH
Confidence 9999999999999999999999999999999865555 999999997 578899999999999999999988765
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-47 Score=390.69 Aligned_cols=219 Identities=25% Similarity=0.426 Sum_probs=196.7
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc--
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-- 112 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-- 112 (449)
...|+++|+++.| +++.+|+|+||++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|++...
T Consensus 17 ~~~l~l~~v~~~~------~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~ 87 (377)
T PRK11607 17 TPLLEIRNLTKSF------DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT---AGQIMLDGVDLSHVP 87 (377)
T ss_pred CceEEEEeEEEEE------CCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCC
Confidence 3469999999983 3457999999999999999999999999999999999999874 8999999987532
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEI 191 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL 191 (449)
..+.+|||||++.+||++||.||+.|+...+ ..+..+.++++.++++.++|.+..++++.+|||||||||+|||||
T Consensus 88 ~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL 164 (377)
T PRK11607 88 PYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSL 164 (377)
T ss_pred HHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 2467999999999999999999999987543 234556677899999999999999999999999999999999999
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 192 LTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 192 ~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
+.+|++|||||||++||+..+..+.+.|+++.++.|. |+|++|||+ .++..++|++++|++|+++..|+++++.
T Consensus 165 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~--tii~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~~~ 238 (377)
T PRK11607 165 AKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGV--TCVMVTHDQ-EEAMTMAGRIAIMNRGKFVQIGEPEEIY 238 (377)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC--EEEEEcCCH-HHHHHhCCEEEEEeCCEEEEEcCHHHHH
Confidence 9999999999999999999999999999999866665 999999996 5899999999999999999999998764
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-47 Score=389.97 Aligned_cols=217 Identities=28% Similarity=0.424 Sum_probs=194.0
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---c
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---A 113 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---~ 113 (449)
.|+++||++.| +++.+|+|+||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|++... .
T Consensus 3 ~l~i~~l~~~~------~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~---~G~I~~~g~~i~~~~~~ 73 (369)
T PRK11000 3 SVTLRNVTKAY------GDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT---SGDLFIGEKRMNDVPPA 73 (369)
T ss_pred EEEEEEEEEEe------CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHh
Confidence 48999999983 3467999999999999999999999999999999999999774 8999999987532 2
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh
Q 044030 114 YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT 193 (449)
Q Consensus 114 ~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~ 193 (449)
.+.++||+|+..+++.+||+||+.|+...+ ..+..+.++++.++++.+||.+..++++.+|||||||||+|||||+.
T Consensus 74 ~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~ 150 (369)
T PRK11000 74 ERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVA 150 (369)
T ss_pred HCCEEEEeCCcccCCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 356999999999999999999999986543 23345556788999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
+|++|||||||+|||+.++..+.+.|++++++.|. |+|++|||+ .++..+||++++|++|+++..|+++++.
T Consensus 151 ~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~--tvI~vTHd~-~~~~~~~d~i~vl~~G~i~~~g~~~~i~ 222 (369)
T PRK11000 151 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGR--TMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLELY 222 (369)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999865555 999999996 5789999999999999999999998764
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-47 Score=380.36 Aligned_cols=216 Identities=26% Similarity=0.430 Sum_probs=192.9
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.++++|++++| +++.+|+|+||++++||++||+||||||||||+++|+|+++|+ +|+|.++|.+...
T Consensus 2 ~l~~~~l~~~~------~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~---~G~i~i~g~~~~~~~~~ 72 (301)
T TIGR03522 2 SIRVSSLTKLY------GTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKE 72 (301)
T ss_pred EEEEEEEEEEE------CCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccChHH
Confidence 58999999983 3567999999999999999999999999999999999998774 8999999987532
Q ss_pred ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHH
Q 044030 113 AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEIL 192 (449)
Q Consensus 113 ~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~ 192 (449)
.++.+||+||++.+++.+||.||+.+.+.++ +.+.++..++++++++.+||.+..+++++.|||||||||+||+||+
T Consensus 73 ~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~ 149 (301)
T TIGR03522 73 VQRNIGYLPEHNPLYLDMYVREYLQFIAGIY---GMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALI 149 (301)
T ss_pred HHhceEEecCCCCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHh
Confidence 1356999999999999999999999877654 2334445567899999999999999999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHHH
Q 044030 193 TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANE 269 (449)
Q Consensus 193 ~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~~ 269 (449)
++|+++||||||+|||+.++..+++.|++++ + +. |||++||++ +++.++||++++|++|++++.|+++++..
T Consensus 150 ~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~-~-~~--tiii~sH~l-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 150 HDPKVLILDEPTTGLDPNQLVEIRNVIKNIG-K-DK--TIILSTHIM-QEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHhc-C-CC--EEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 9999999999999999999999999999996 3 44 999999996 57999999999999999999999988754
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-47 Score=386.30 Aligned_cols=221 Identities=25% Similarity=0.409 Sum_probs=193.0
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
+|+++||++.| .. ..+.+.+|+|+||+|++||+++|+||||||||||+|+|+|+++|. +|+|.++|.+...
T Consensus 1 mi~i~~l~~~y-~~-~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~---~G~I~~~g~~i~~~~~~ 75 (343)
T PRK11153 1 MIELKNISKVF-PQ-GGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT---SGRVLVDGQDLTALSEK 75 (343)
T ss_pred CEEEEeEEEEe-CC-CCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHH
Confidence 37899999983 21 011457999999999999999999999999999999999999774 8999999987531
Q ss_pred ----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHH
Q 044030 113 ----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSIS 188 (449)
Q Consensus 113 ----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia 188 (449)
.++.++|++|++.+++.+||.||+.+..... +.+..+.++++.++++.+||.+..++++.+|||||||||+||
T Consensus 76 ~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lA 152 (343)
T PRK11153 76 ELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIA 152 (343)
T ss_pred HHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHH
Confidence 1356999999999999999999999876543 233445566789999999999999999999999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 189 IEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 189 ~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
+||+.+|++|||||||+|||+.++..+++.|++++++.|. |||++||++ +++.++||++++|++|++++.|+++++.
T Consensus 153 raL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~--tiilvtH~~-~~i~~~~d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 153 RALASNPKVLLCDEATSALDPATTRSILELLKDINRELGL--TIVLITHEM-DVVKRICDRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999999999865555 999999996 5788999999999999999999987663
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-49 Score=358.34 Aligned_cols=218 Identities=25% Similarity=0.459 Sum_probs=195.7
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.|..+|+.++| ++++++++||+++++||+++++|||||||||.+.++.|+.+|+ +|+|.+||.+++.
T Consensus 4 ~L~a~~l~K~y------~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d---~G~i~ld~~diT~lPm~ 74 (243)
T COG1137 4 TLVAENLAKSY------KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDITKLPMH 74 (243)
T ss_pred EEEehhhhHhh------CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC---CceEEECCcccccCChH
Confidence 57889999883 5788999999999999999999999999999999999999886 9999999998642
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHH
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIE 190 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~a 190 (449)
.+..+||+||++..|..|||+||+......+.. .....+.+.+++++|+.|++.++++++...||||||||+.||||
T Consensus 75 ~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARa 153 (243)
T COG1137 75 KRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARA 153 (243)
T ss_pred HHhhcCcccccccchHhhcCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHH
Confidence 124699999999999999999999988876531 12234556678899999999999999999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 191 ILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 191 L~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
|+.+|+.++|||||+|.||.+..+|.++++.|+++ |. .|+++-|+.. +...+|||.+++++|++.++|+|+++.
T Consensus 154 La~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~r-gi--GvLITDHNVR-EtL~i~dRaYIi~~G~vla~G~p~ei~ 227 (243)
T COG1137 154 LAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDR-GI--GVLITDHNVR-ETLDICDRAYIISDGKVLAEGSPEEIV 227 (243)
T ss_pred HhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhC-Cc--eEEEccccHH-HHHhhhheEEEEecCeEEecCCHHHHh
Confidence 99999999999999999999999999999999854 44 9999999975 789999999999999999999999875
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-48 Score=362.59 Aligned_cols=219 Identities=28% Similarity=0.494 Sum_probs=204.6
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc-cC
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA-YG 115 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~-~~ 115 (449)
.|++++|+++| +++.+++|+||++++|+|++++|||||||||++++|.|++.|+ +|+|.++|.+.+.. +.
T Consensus 2 ~L~ie~vtK~F------g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~---~G~I~~~g~~~~~~~~~ 72 (300)
T COG4152 2 ALEIEGVTKSF------GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQEIKN 72 (300)
T ss_pred ceEEecchhcc------CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCcc---CceEEEcCcchhhhhhh
Confidence 58899999982 7889999999999999999999999999999999999999874 99999999987543 46
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCC
Q 044030 116 TSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRP 195 (449)
Q Consensus 116 ~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P 195 (449)
+|||+|.+..|++.+||.|.+.|.++++ +++.++.+.+++.||+.+++.....+++.+||.|++|++.+..+++++|
T Consensus 73 rIGyLPEERGLy~k~tv~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHeP 149 (300)
T COG4152 73 RIGYLPEERGLYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEP 149 (300)
T ss_pred hcccChhhhccCccCcHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCC
Confidence 7999999999999999999999999987 7888999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHHHHH
Q 044030 196 KLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANEFF 271 (449)
Q Consensus 196 ~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~~~f 271 (449)
+++|||||+|||||.+.+.+-+.+.+++++ |.|||+|||.+ +.+.++||++++|++|+.|.+|+.+++...|
T Consensus 150 eLlILDEPFSGLDPVN~elLk~~I~~lk~~---GatIifSsH~M-e~vEeLCD~llmL~kG~~V~~G~v~~ir~~~ 221 (300)
T COG4152 150 ELLILDEPFSGLDPVNVELLKDAIFELKEE---GATIIFSSHRM-EHVEELCDRLLMLKKGQTVLYGTVEDIRRSF 221 (300)
T ss_pred CEEEecCCccCCChhhHHHHHHHHHHHHhc---CCEEEEecchH-HHHHHHhhhhheecCCceEEeccHHHHHHhc
Confidence 999999999999999999999999999854 55999999996 5799999999999999999999999887655
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=363.80 Aligned_cols=207 Identities=28% Similarity=0.453 Sum_probs=180.1
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
|+++|+++.| .. +.+.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 2 l~~~~l~~~~-~~---~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~ 74 (216)
T TIGR00960 2 IRFEQVSKAY-PG---GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPT---RGKIRFNGQDLTRLRGRE 74 (216)
T ss_pred eEEEEEEEEe-cC---CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEehhhcChhH
Confidence 7899999983 21 1246999999999999999999999999999999999998774 8999999987531
Q ss_pred ---ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHH
Q 044030 113 ---AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISI 189 (449)
Q Consensus 113 ---~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~ 189 (449)
.++.++|++|++.+++.+||.||+.+..... .....+.++++.++++.+|+.+..++++.+|||||||||+||+
T Consensus 75 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lar 151 (216)
T TIGR00960 75 IPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRII---GVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIAR 151 (216)
T ss_pred HHHHHHhceEEecCccccccccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHH
Confidence 1246999999999999999999999876542 2233445567889999999999999999999999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeE
Q 044030 190 EILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQT 258 (449)
Q Consensus 190 aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~i 258 (449)
||+.+|++|||||||+|||+.++..+.+.|++++++ |. |||++||++ +++..+||++++|++|++
T Consensus 152 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~--tii~vsH~~-~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 152 AIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRR-GT--TVLVATHDI-NLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC-CC--EEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999753 55 999999997 578889999999999974
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-47 Score=360.54 Aligned_cols=210 Identities=28% Similarity=0.480 Sum_probs=184.6
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---cc
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---AY 114 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---~~ 114 (449)
|+++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+... ..
T Consensus 1 i~~~~l~~~~------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~v~~~g~~~~~~~~~~ 71 (213)
T cd03301 1 VELENVTKRF------GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPKD 71 (213)
T ss_pred CEEEeeEEEE------CCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCccc
Confidence 4689999983 3457999999999999999999999999999999999998774 8999999987532 12
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhC
Q 044030 115 GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTR 194 (449)
Q Consensus 115 ~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~ 194 (449)
+.++|++|++.+++.+|++||+.+..... .....+.+++++++++.+|+.+..++++.+||||||||++||+||+.+
T Consensus 72 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~ 148 (213)
T cd03301 72 RDIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVRE 148 (213)
T ss_pred ceEEEEecChhhccCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcC
Confidence 46999999999999999999998875432 223444556788999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 195 PKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 195 P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
|++++|||||+|||+.++..+++.|++++++.|. |||++||++ .++..+||++++|++|++++.|
T Consensus 149 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~--tvi~~sH~~-~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 149 PKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGT--TTIYVTHDQ-VEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCC--EEEEEeCCH-HHHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999999999999999865555 999999996 5788999999999999999876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-47 Score=365.49 Aligned_cols=219 Identities=26% Similarity=0.442 Sum_probs=189.0
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
|+++|+++.| . ++.+.+.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 2 i~~~~l~~~~-~-~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 76 (233)
T cd03258 2 IELKNVSKVF-G-DTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT---SGSVLVDGTDLTLLSGKE 76 (233)
T ss_pred eEEecceEEc-c-CCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHH
Confidence 7899999983 2 1101127999999999999999999999999999999999999774 8999999987531
Q ss_pred ---ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHH
Q 044030 113 ---AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISI 189 (449)
Q Consensus 113 ---~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~ 189 (449)
..+.++|++|++.+++.+|+.||+.+....+ ........+.+.++++.+|+.+..++++..|||||||||+||+
T Consensus 77 ~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~ 153 (233)
T cd03258 77 LRKARRRIGMIFQHFNLLSSRTVFENVALPLEIA---GVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIAR 153 (233)
T ss_pred HHHHHhheEEEccCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHH
Confidence 1356999999999999999999998875432 1233444567889999999999999999999999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 190 EILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 190 aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
||+.+|+++||||||+|||+.++..+.+.|++++++.|. |||++||++ +++.++||++++|++|++++.|+++++
T Consensus 154 al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~--tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (233)
T cd03258 154 ALANNPKVLLCDEATSALDPETTQSILALLRDINRELGL--TIVLITHEM-EVVKRICDRVAVMEKGEVVEEGTVEEV 228 (233)
T ss_pred HHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999999999999999999865555 999999996 578899999999999999999987655
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-47 Score=381.07 Aligned_cols=206 Identities=26% Similarity=0.442 Sum_probs=184.2
Q ss_pred cccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----ccCcEEEEcCCCCCCCC
Q 044030 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----AYGTSAYVTQDDTLITT 129 (449)
Q Consensus 54 ~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----~~~~i~yv~Q~~~l~~~ 129 (449)
+++.+|+|+||+|++||++||+||||||||||+|+|+|+++|+ +|+|.++|.+... .++.+||++|++.+++.
T Consensus 4 ~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 80 (302)
T TIGR01188 4 GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVDED 80 (302)
T ss_pred CCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCHHHHHhhcEEecCCCCCCCC
Confidence 4567999999999999999999999999999999999999874 8999999987532 13469999999999999
Q ss_pred CCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 044030 130 LTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDS 209 (449)
Q Consensus 130 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~ 209 (449)
+||+||+.+.+.++ +.+..+.+++++++++.+||.+..+++++.|||||||||+||+||+.+|++|||||||+|||+
T Consensus 81 ~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~ 157 (302)
T TIGR01188 81 LTGRENLEMMGRLY---GLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDP 157 (302)
T ss_pred CcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH
Confidence 99999999876553 233444556789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHHH
Q 044030 210 AASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANE 269 (449)
Q Consensus 210 ~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~~ 269 (449)
.++..+++.|++++++ |. |||++||++ .++.++||++++|++|++++.|+++++..
T Consensus 158 ~~~~~l~~~l~~~~~~-g~--tvi~~sH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 158 RTRRAIWDYIRALKEE-GV--TILLTTHYM-EEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred HHHHHHHHHHHHHHhC-CC--EEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 9999999999999854 55 999999996 58899999999999999999999987754
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-47 Score=365.12 Aligned_cols=217 Identities=31% Similarity=0.457 Sum_probs=187.3
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
|+++||++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 1 l~~~~l~~~~------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~ 71 (236)
T cd03219 1 LEVRGLTKRF------GGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPHE 71 (236)
T ss_pred CeeeeeEEEE------CCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEECCCCCHHH
Confidence 4688999983 3456999999999999999999999999999999999998774 8999999987532
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCC-------CCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDT-------MPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRR 184 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~-------~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR 184 (449)
....++|++|++.+++.+||+||+.+......... ....+..+++.++++.+|+.+..++++++||||||||
T Consensus 72 ~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qr 151 (236)
T cd03219 72 IARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRR 151 (236)
T ss_pred HHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHH
Confidence 12459999999999999999999988754321110 0123445678899999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecCh
Q 044030 185 VSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264 (449)
Q Consensus 185 v~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~ 264 (449)
|+||+||+.+|++++|||||+|||+.++..+++.|+++++ .|. |||++||++ +++..+||++++|++|+++..|++
T Consensus 152 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~--tii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~~~ 227 (236)
T cd03219 152 LEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-RGI--TVLLVEHDM-DVVMSLADRVTVLDQGRVIAEGTP 227 (236)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCC--EEEEEecCH-HHHHHhCCEEEEEeCCEEEeecCH
Confidence 9999999999999999999999999999999999999985 455 999999997 578899999999999999999988
Q ss_pred hhH
Q 044030 265 TAA 267 (449)
Q Consensus 265 ~~~ 267 (449)
+++
T Consensus 228 ~~~ 230 (236)
T cd03219 228 DEV 230 (236)
T ss_pred HHh
Confidence 765
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-47 Score=364.02 Aligned_cols=214 Identities=27% Similarity=0.479 Sum_probs=187.1
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
++++||++.| +++.+|+|+||++++||+++|+|||||||||||++|+|+++|. +|+|.++|.+...
T Consensus 1 l~~~~l~~~~------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 71 (232)
T cd03218 1 LRAENLSKRY------GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDITKLPMHK 71 (232)
T ss_pred CeEEEEEEEe------CCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccCCHhH
Confidence 4688999983 3457999999999999999999999999999999999999774 8999999986421
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEI 191 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL 191 (449)
..+.++|++|++.+++.+||+||+.+....+ .....+..++++++++.+|+.+..++.+..||||||||++||+||
T Consensus 72 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al 148 (232)
T cd03218 72 RARLGIGYLPQEASIFRKLTVEENILAVLEIR---GLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARAL 148 (232)
T ss_pred HHhccEEEecCCccccccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 1246999999999999999999998865432 122334456788999999999999999999999999999999999
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 192 LTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 192 ~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
+.+|++|||||||+|||+.++..+.+.|+++++ .|. |||++||++ .++.++||++++|++|+++..|+++++
T Consensus 149 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~--tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 220 (232)
T cd03218 149 ATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD-RGI--GVLITDHNV-RETLSITDRAYIIYEGKVLAEGTPEEI 220 (232)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCC--EEEEEeCCH-HHHHHhCCEEEEEECCeEEEEeCHHHh
Confidence 999999999999999999999999999999985 444 999999997 478999999999999999999987654
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-47 Score=385.72 Aligned_cols=206 Identities=25% Similarity=0.362 Sum_probs=186.6
Q ss_pred cccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---------ccCcEEEEcCCC
Q 044030 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---------AYGTSAYVTQDD 124 (449)
Q Consensus 54 ~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---------~~~~i~yv~Q~~ 124 (449)
+.+.+|+|+||+|++||+++|+|||||||||||++|+|+.+| ++|+|.++|.++.. .++.++||+|++
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p---~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~ 80 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEP---TAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF 80 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCC---CceEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence 567799999999999999999999999999999999999987 49999999987532 135799999999
Q ss_pred CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCC
Q 044030 125 TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPT 204 (449)
Q Consensus 125 ~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPt 204 (449)
.++|++||+||+.|+..+. +.+.++..+++.++++.+||++..++++.+|||||||||+|||||+.+|++|||||||
T Consensus 81 ~l~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~ 157 (363)
T TIGR01186 81 ALFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAF 157 (363)
T ss_pred cCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 9999999999999987653 3445566778999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 205 SGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 205 sgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
++||+.++..+.+.|.++.++.|+ |||++|||+ .++..+||+|++|++|+++..|+++++.
T Consensus 158 saLD~~~r~~l~~~l~~l~~~~~~--Tii~vTHd~-~ea~~~~drI~vl~~G~iv~~g~~~ei~ 218 (363)
T TIGR01186 158 SALDPLIRDSMQDELKKLQATLQK--TIVFITHDL-DEAIRIGDRIVIMKAGEIVQVGTPDEIL 218 (363)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCC--EEEEEeCCH-HHHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 999999999999999999865555 999999996 5789999999999999999999998764
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-46 Score=372.87 Aligned_cols=222 Identities=26% Similarity=0.394 Sum_probs=189.4
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.|+++||++.| .......+.+|+||||+|++||++||+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 2 ~l~~~~l~~~y-~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~ 77 (287)
T PRK13637 2 SIKIENLTHIY-MEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVK 77 (287)
T ss_pred EEEEEEEEEEC-CCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEECCEECCCcCcc
Confidence 48899999983 211111257999999999999999999999999999999999999774 8999999987532
Q ss_pred ---ccCcEEEEcCCCC-CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc--hhhCccCCCCChHHHHHHH
Q 044030 113 ---AYGTSAYVTQDDT-LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ--DAMNTRIRRLSGGQKRRVS 186 (449)
Q Consensus 113 ---~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~~~~LSgGerqRv~ 186 (449)
..+.+|||||++. .+...||+||+.|+.... +.+.++..+++.++++.+||. +..+++++.||||||||++
T Consensus 78 ~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~ 154 (287)
T PRK13637 78 LSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVA 154 (287)
T ss_pred HHHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHH
Confidence 1357999999963 333579999999875432 244555667789999999997 6789999999999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhh
Q 044030 187 ISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATA 266 (449)
Q Consensus 187 ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~ 266 (449)
||+||+.+|++|||||||+|||+.++..+++.|++++++.|. |||++||++ .++..+||++++|++|++++.|++++
T Consensus 155 iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~--tvi~vtHd~-~~~~~~~drv~~l~~G~i~~~g~~~~ 231 (287)
T PRK13637 155 IAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNM--TIILVSHSM-EDVAKLADRIIVMNKGKCELQGTPRE 231 (287)
T ss_pred HHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999999999865555 999999996 57888999999999999999999887
Q ss_pred HH
Q 044030 267 AN 268 (449)
Q Consensus 267 ~~ 268 (449)
+.
T Consensus 232 ~~ 233 (287)
T PRK13637 232 VF 233 (287)
T ss_pred HH
Confidence 64
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-48 Score=343.53 Aligned_cols=213 Identities=27% Similarity=0.461 Sum_probs=187.1
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---cc
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---AY 114 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---~~ 114 (449)
+.+.+|++.| + +.==..+++|+.||++||+||||||||||||+|+|+..| .+|+|++||++... ..
T Consensus 2 l~L~~V~~~y------~--~~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P---~~G~i~i~g~d~t~~~P~~ 70 (231)
T COG3840 2 LALDDVRFSY------G--HLPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETP---ASGEILINGVDHTASPPAE 70 (231)
T ss_pred ccccceEEee------C--cceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCC---CCceEEEcCeecCcCCccc
Confidence 4567788773 1 123457889999999999999999999999999999977 49999999998542 23
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhC
Q 044030 115 GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTR 194 (449)
Q Consensus 115 ~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~ 194 (449)
+-++++||+.++|.++||.+|+.++....+ .+ .++.+++++.++..+||..+.++.+.+|||||||||++||+|+.+
T Consensus 71 RPVSmlFQEnNLFaHLtV~qNigLGl~P~L--kL-~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~ 147 (231)
T COG3840 71 RPVSMLFQENNLFAHLTVAQNIGLGLSPGL--KL-NAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVRE 147 (231)
T ss_pred CChhhhhhccccchhhhhhhhhcccCCccc--cc-CHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhcc
Confidence 568999999999999999999988864322 12 345677899999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 195 PKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 195 P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
-+|++||||+|+|||.-+.++..++.+++++.+. |++|+||+| +++.+++|+++++++|+|.++|+.++.
T Consensus 148 ~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~--TllmVTH~~-~Da~~ia~~~~fl~~Gri~~~g~~~~~ 217 (231)
T COG3840 148 QPILLLDEPFSALDPALRAEMLALVSQLCDERKM--TLLMVTHHP-EDAARIADRVVFLDNGRIAAQGSTQEL 217 (231)
T ss_pred CCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCC--EEEEEeCCH-HHHHHhhhceEEEeCCEEEeeccHHHH
Confidence 9999999999999999999999999999988766 999999998 579999999999999999999988755
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-47 Score=374.20 Aligned_cols=232 Identities=28% Similarity=0.373 Sum_probs=193.6
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
+|+++||++.| ..+....+.+|+||||+|++||+++|+||||||||||+++|+|+++|. +|+|+++|.+...
T Consensus 1 mi~~~~v~~~y-~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~ 76 (288)
T PRK13643 1 MIKFEKVNYTY-QPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT---EGKVTVGDIVVSSTSKQ 76 (288)
T ss_pred CEEEEEEEEEe-CCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEECcccccc
Confidence 37899999983 211111236999999999999999999999999999999999999774 8999999987521
Q ss_pred -----ccCcEEEEcCCC--CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccCCCCChHHHHH
Q 044030 113 -----AYGTSAYVTQDD--TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSGGQKRR 184 (449)
Q Consensus 113 -----~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGerqR 184 (449)
.++.++||+|++ .+++ .||.||+.|+.... +.+..+.+.++.++++.+||. +..++.+..||||||||
T Consensus 77 ~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqr 152 (288)
T PRK13643 77 KEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRR 152 (288)
T ss_pred ccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHH
Confidence 134699999986 4555 59999999876432 234555667889999999996 57899999999999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecCh
Q 044030 185 VSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264 (449)
Q Consensus 185 v~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~ 264 (449)
++||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|. |||++||++ .++..+||+|++|++|++++.|++
T Consensus 153 vaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~-~g~--til~vtHd~-~~~~~~~dri~~l~~G~i~~~g~~ 228 (288)
T PRK13643 153 VAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ-SGQ--TVVLVTHLM-DDVADYADYVYLLEKGHIISCGTP 228 (288)
T ss_pred HHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCC--EEEEEecCH-HHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999985 355 999999996 578899999999999999999999
Q ss_pred hhHH---HHHHHCCCCCCC
Q 044030 265 TAAN---EFFAFNGFPCPT 280 (449)
Q Consensus 265 ~~~~---~~f~~~g~~~~~ 280 (449)
+++. +.+...|+.+|.
T Consensus 229 ~~~~~~~~~~~~~~~~~p~ 247 (288)
T PRK13643 229 SDVFQEVDFLKAHELGVPK 247 (288)
T ss_pred HHHHcCHHHHHHcCCCCCh
Confidence 8764 234455665553
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-47 Score=364.50 Aligned_cols=218 Identities=31% Similarity=0.487 Sum_probs=186.2
Q ss_pred EEEEeeEEEEeecCcccc-cceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 38 LTWKDLTVTIVSNGKKGS-SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
++++||++.| ++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 1 l~~~~l~~~~------~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~ 71 (241)
T cd03256 1 IEVENLSKTY------PNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGK 71 (241)
T ss_pred CEEeeEEEec------CCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEeccccCHh
Confidence 4688999883 23 57999999999999999999999999999999999998774 8999999987531
Q ss_pred ----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccC-----CCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHH
Q 044030 113 ----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQL-----PDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKR 183 (449)
Q Consensus 113 ----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~-----~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerq 183 (449)
..+.++|++|++.+++.+||.||+.+...... ..........+++.++++.+++.+..++++.+|||||||
T Consensus 72 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q 151 (241)
T cd03256 72 ALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQ 151 (241)
T ss_pred HHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHH
Confidence 12469999999999999999999987542110 001112234456888999999999999999999999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
||+||+||+.+|+++||||||+|||+.++..+.+.|++++++.|. |||++||++ +++..+||++++|++|++++.|+
T Consensus 152 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~--tii~~tH~~-~~~~~~~d~v~~l~~G~i~~~~~ 228 (241)
T cd03256 152 RVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGI--TVIVSLHQV-DLAREYADRIVGLKDGRIVFDGP 228 (241)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEeecC
Confidence 999999999999999999999999999999999999999865555 999999997 57888999999999999999998
Q ss_pred hhhH
Q 044030 264 ATAA 267 (449)
Q Consensus 264 ~~~~ 267 (449)
+++.
T Consensus 229 ~~~~ 232 (241)
T cd03256 229 PAEL 232 (241)
T ss_pred HHHh
Confidence 8765
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-47 Score=359.97 Aligned_cols=215 Identities=35% Similarity=0.564 Sum_probs=186.5
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----c
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----A 113 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----~ 113 (449)
|+++||++.| .. +.+++|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+... .
T Consensus 1 l~~~~l~~~~-~~---~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~ 73 (220)
T cd03263 1 LQIRNLTKTY-KK---GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIRTDRKAA 73 (220)
T ss_pred CEEEeeEEEe-CC---CCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccchHHH
Confidence 4689999983 10 1267999999999999999999999999999999999998774 8999999987532 1
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh
Q 044030 114 YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT 193 (449)
Q Consensus 114 ~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~ 193 (449)
.+.++|++|++.+++.+|++||+.+....+ ..+..+..+++.++++.++|.+..++++.+||||||||++||+||+.
T Consensus 74 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 150 (220)
T cd03263 74 RQSLGYCPQFDALFDELTVREHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIG 150 (220)
T ss_pred hhhEEEecCcCCccccCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhc
Confidence 346999999999999999999998876543 22333445678899999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
+|+++||||||+|||+.++..+.+.|+++++ +. |||++||++ ..+..+||++++|++|++++.|+++++
T Consensus 151 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~--tii~~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 151 GPSVLLLDEPTSGLDPASRRAIWDLILEVRK--GR--SIILTTHSM-DEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHhc--CC--EEEEEcCCH-HHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999999974 34 999999997 468889999999999999999987653
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-48 Score=360.21 Aligned_cols=221 Identities=29% Similarity=0.447 Sum_probs=197.2
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
..+++++|++. + |+-.+++||||++++||+++||||||||||||+|+|+|.++|+ +|+|.++|++++.
T Consensus 3 ~lL~v~~l~k~-F-----GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~---~G~v~~~G~~it~l~p 73 (250)
T COG0411 3 PLLEVRGLSKR-F-----GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPP 73 (250)
T ss_pred ceeeeccceee-c-----CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC---CceEEECCcccCCCCH
Confidence 35789999998 2 7789999999999999999999999999999999999999885 8999999997642
Q ss_pred ---ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccC--------CC-CCCHHHHHHHHHHHHHHcCCchhhCccCCCCChH
Q 044030 113 ---AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQL--------PD-TMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGG 180 (449)
Q Consensus 113 ---~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~--------~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgG 180 (449)
.+..++..||...+|++|||.||+..+...+. +. ....++..+++.++|+.+||.+.+|++.++||+|
T Consensus 74 ~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG 153 (250)
T COG0411 74 HRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYG 153 (250)
T ss_pred HHHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChh
Confidence 13468899999999999999999998865321 11 1134556778999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 181 erqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
||||+.|||||+.+|++|+||||.+||.+....++.+.|++++++.|. ||+++-||+ ..++.+||||++|+.|++++
T Consensus 154 ~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~--tillIEHdM-~~Vm~l~dri~Vl~~G~~IA 230 (250)
T COG0411 154 QQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGV--TILLIEHDM-KLVMGLADRIVVLNYGEVIA 230 (250)
T ss_pred HhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCc--EEEEEEecc-HHHhhhccEEEeccCCcCcc
Confidence 999999999999999999999999999999999999999999975555 999999996 68999999999999999999
Q ss_pred ecChhhHH
Q 044030 261 FGPATAAN 268 (449)
Q Consensus 261 ~g~~~~~~ 268 (449)
.|+|+++.
T Consensus 231 eG~P~eV~ 238 (250)
T COG0411 231 EGTPEEVR 238 (250)
T ss_pred cCCHHHHh
Confidence 99999875
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-47 Score=361.05 Aligned_cols=209 Identities=32% Similarity=0.487 Sum_probs=178.5
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
|+++||++.| . +..+.+.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 1 l~~~~l~~~~-~-~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~ 75 (218)
T cd03255 1 IELKNLSKTY-G-GGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVDGTDISKLSEKE 75 (218)
T ss_pred CeEeeeEEEe-c-CCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCC---ceeEEECCEehhhcchhH
Confidence 4689999983 2 1001157999999999999999999999999999999999998774 8999999987531
Q ss_pred ----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHH
Q 044030 113 ----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSIS 188 (449)
Q Consensus 113 ----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia 188 (449)
..+.++|++|++.+++.+||+||+.+....+ .......++++.++++.+||.+..+++++.|||||||||+||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 152 (218)
T cd03255 76 LAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLA---GVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIA 152 (218)
T ss_pred HHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHH
Confidence 1246999999999999999999999876543 122334456788999999999999999999999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeE
Q 044030 189 IEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQT 258 (449)
Q Consensus 189 ~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~i 258 (449)
+||+.+|+++||||||+|||+.++..+.+.|++++++.|. |||++||++. ++. +||++++|++|++
T Consensus 153 ~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~--tii~~sH~~~-~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 153 RALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGT--TIVVVTHDPE-LAE-YADRIIELRDGKI 218 (218)
T ss_pred HHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCC--eEEEEECCHH-HHh-hhcEEEEeeCCcC
Confidence 9999999999999999999999999999999999864455 9999999974 565 9999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-47 Score=356.79 Aligned_cols=209 Identities=29% Similarity=0.517 Sum_probs=183.1
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-ccCc
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-AYGT 116 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-~~~~ 116 (449)
++++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++| .+|+|.++|.+... ..+.
T Consensus 1 l~~~~l~~~~------~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~ 71 (210)
T cd03269 1 LEVENVTKRF------GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILP---DSGEVLFDGKPLDIAARNR 71 (210)
T ss_pred CEEEEEEEEE------CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCCchhHHHHcc
Confidence 4689999983 345799999999999999999999999999999999999877 48999999986532 2356
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCC
Q 044030 117 SAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPK 196 (449)
Q Consensus 117 i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~ 196 (449)
++|++|++.+++.+|++||+.+....+ .....+..+.+.++++.+|+.+..++++.+||||||||++||+||+.+|+
T Consensus 72 i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 148 (210)
T cd03269 72 IGYLPEERGLYPKMKVIDQLVYLAQLK---GLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPE 148 (210)
T ss_pred EEEeccCCcCCcCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999998875543 22334455678899999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 197 LLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 197 llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
+++|||||+|||+.++..+.+.|++++++ |. |||++||++ .++.++||++++|++|++++.|
T Consensus 149 ~lllDEP~~~LD~~~~~~~~~~l~~~~~~-~~--tii~~sH~~-~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 149 LLILDEPFSGLDPVNVELLKDVIRELARA-GK--TVILSTHQM-ELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CC--EEEEECCCH-HHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999999754 44 999999996 5788899999999999998764
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-47 Score=365.17 Aligned_cols=219 Identities=30% Similarity=0.447 Sum_probs=186.4
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
++++||++.| . +++.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 2 l~~~~l~~~~-~----~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~ 73 (243)
T TIGR02315 2 LEVENLSKVY-P----NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGKK 73 (243)
T ss_pred eEEEeeeeec-C----CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ccEEEECCEEhhhCCHHH
Confidence 6899999982 1 1457999999999999999999999999999999999998774 8999999987531
Q ss_pred ---ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccC---C--CCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHH
Q 044030 113 ---AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQL---P--DTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRR 184 (449)
Q Consensus 113 ---~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~---~--~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR 184 (449)
.++.++|++|++.+++.+||.||+.++..... . ......+.++++.++++.+|+.+..++++.+||||||||
T Consensus 74 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qr 153 (243)
T TIGR02315 74 LRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQR 153 (243)
T ss_pred HHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHH
Confidence 13469999999999999999999987532100 0 001123345678899999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecCh
Q 044030 185 VSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264 (449)
Q Consensus 185 v~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~ 264 (449)
|+||+||+.+|++|||||||+|||+.++..+.+.|++++++.|. |||++||++ ..+.++||++++|++|++++.|++
T Consensus 154 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~--tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~ 230 (243)
T TIGR02315 154 VAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGI--TVIINLHQV-DLAKKYADRIVGLKAGEIVFDGAP 230 (243)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCC--EEEEEeCCH-HHHHHhcCeEEEEECCEEEecCCH
Confidence 99999999999999999999999999999999999999755555 999999997 478899999999999999999988
Q ss_pred hhH
Q 044030 265 TAA 267 (449)
Q Consensus 265 ~~~ 267 (449)
+++
T Consensus 231 ~~~ 233 (243)
T TIGR02315 231 SEL 233 (243)
T ss_pred HHh
Confidence 654
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-46 Score=370.86 Aligned_cols=221 Identities=26% Similarity=0.350 Sum_probs=188.4
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.++++||++.| .......+.+|+||||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++..
T Consensus 2 ~l~~~~l~~~y-~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~ 77 (290)
T PRK13634 2 DITFQKVEHRY-QYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT---SGTVTIGERVITAGKKN 77 (290)
T ss_pred EEEEEEEEEEE-CCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECcccccc
Confidence 37899999984 211111256999999999999999999999999999999999999774 8999999987531
Q ss_pred -----ccCcEEEEcCCC--CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccCCCCChHHHHH
Q 044030 113 -----AYGTSAYVTQDD--TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSGGQKRR 184 (449)
Q Consensus 113 -----~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGerqR 184 (449)
..+.++||+|++ .++ ..||.||+.|+.... ..+..+.+++++++++.+||. +..++++..||||||||
T Consensus 78 ~~~~~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qr 153 (290)
T PRK13634 78 KKLKPLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRR 153 (290)
T ss_pred chHHHHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHH
Confidence 124699999986 455 469999999875432 234455556789999999997 67899999999999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecCh
Q 044030 185 VSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264 (449)
Q Consensus 185 v~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~ 264 (449)
|+||+||+.+|++|||||||+|||+.++..+++.|++++++.|. |||++||++ .++.++||++++|++|++++.|++
T Consensus 154 v~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~--tviiitHd~-~~~~~~~drv~~l~~G~i~~~g~~ 230 (290)
T PRK13634 154 VAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGL--TTVLVTHSM-EDAARYADQIVVMHKGTVFLQGTP 230 (290)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999999999865566 999999996 578899999999999999999998
Q ss_pred hhHH
Q 044030 265 TAAN 268 (449)
Q Consensus 265 ~~~~ 268 (449)
+++.
T Consensus 231 ~~~~ 234 (290)
T PRK13634 231 REIF 234 (290)
T ss_pred HHHh
Confidence 8763
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-46 Score=366.86 Aligned_cols=217 Identities=27% Similarity=0.440 Sum_probs=189.5
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.|+++||++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 7 ~l~~~~l~~~~------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~ 77 (269)
T PRK11831 7 LVDMRGVSFTR------GNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD---HGEILFDGENIPAMSRS 77 (269)
T ss_pred eEEEeCeEEEE------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccChh
Confidence 68999999983 3467999999999999999999999999999999999998774 8999999986531
Q ss_pred ----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHH
Q 044030 113 ----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSIS 188 (449)
Q Consensus 113 ----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia 188 (449)
..+.++|++|+..+++.+||.||+.+...... ..+....++++.++++.+|+.+..++++..|||||||||+||
T Consensus 78 ~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~la 155 (269)
T PRK11831 78 RLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALA 155 (269)
T ss_pred hHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHH
Confidence 12469999999999999999999988643221 123334456678899999999999999999999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 189 IEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 189 ~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
+||+.+|+++||||||+|||+.++..+.+.|++++++.|. |||++||++ .++..+||++++|++|++++.|+++++
T Consensus 156 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~--tiiivsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 231 (269)
T PRK11831 156 RAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGV--TCVVVSHDV-PEVLSIADHAYIVADKKIVAHGSAQAL 231 (269)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCc--EEEEEecCH-HHHHHhhCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999865555 999999996 578899999999999999999988765
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-46 Score=357.41 Aligned_cols=213 Identities=30% Similarity=0.459 Sum_probs=184.0
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----c
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----A 113 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----~ 113 (449)
++++|+++.| . ++.....+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+... .
T Consensus 2 l~~~~v~~~~-~-~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~ 76 (218)
T cd03266 2 ITADALTKRF-R-DVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVKEPAEA 76 (218)
T ss_pred eEEEEEEEec-C-CCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEEcccCHHHH
Confidence 6899999983 2 1101126999999999999999999999999999999999998774 8999999987532 1
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh
Q 044030 114 YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT 193 (449)
Q Consensus 114 ~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~ 193 (449)
.+.++|++|++.+++.+||.||+.+....+ .....+..+++.++++.+|+.+..++++..||||||||++||+||+.
T Consensus 77 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 153 (218)
T cd03266 77 RRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVH 153 (218)
T ss_pred HhhEEEecCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhc
Confidence 356999999999999999999998865443 22344456678899999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
+|++|+|||||+|||+.++..+.+.|+++++ .|. |||++||++ .++..+||++++|++|++++.|
T Consensus 154 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~--tii~~tH~~-~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 154 DPPVLLLDEPTTGLDVMATRALREFIRQLRA-LGK--CILFSTHIM-QEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH-CCC--EEEEEeCCH-HHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999974 455 999999996 5788999999999999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-46 Score=364.69 Aligned_cols=213 Identities=32% Similarity=0.454 Sum_probs=186.3
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcE
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTS 117 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i 117 (449)
|+++|+++.| +++.+|+|+||+|++||+++|+|||||||||||++|+|+++|. +|+|.++|.+.......+
T Consensus 2 l~~~~l~~~~------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 72 (255)
T PRK11248 2 LQISHLYADY------GGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEGPGAER 72 (255)
T ss_pred EEEEEEEEEe------CCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCCcE
Confidence 7899999983 3457999999999999999999999999999999999998774 899999998764333468
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCE
Q 044030 118 AYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKL 197 (449)
Q Consensus 118 ~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~l 197 (449)
+|++|++.+++.+||.||+.+..... .....+..+++.++++.+||.+..++++.+|||||||||+||+||+.+|++
T Consensus 73 ~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~l 149 (255)
T PRK11248 73 GVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQL 149 (255)
T ss_pred EEEeCCCccCCCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999998865432 223344456788999999999989999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEee--CCeEEEecChh
Q 044030 198 LFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLS--AGQTVYFGPAT 265 (449)
Q Consensus 198 lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~--~G~iv~~g~~~ 265 (449)
|||||||+|||+.++..+.+.|++++++.|. |||++||++ .++..+||++++|+ +|+++..++.+
T Consensus 150 llLDEPt~~LD~~~~~~l~~~L~~~~~~~g~--tviivsH~~-~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 150 LLLDEPFGALDAFTREQMQTLLLKLWQETGK--QVLLITHDI-EEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHhcCC--EEEEEeCCH-HHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 9999999999999999999999998654455 999999997 57889999999998 59999887653
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-46 Score=360.82 Aligned_cols=215 Identities=26% Similarity=0.419 Sum_probs=187.6
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
++++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 2 l~~~~l~~~~------~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 72 (240)
T PRK09493 2 IEFKNVSKHF------GPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEIT---SGDLIVDGLKVNDPKVDE 72 (240)
T ss_pred EEEEeEEEEE------CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCChhH
Confidence 6899999983 3457999999999999999999999999999999999998774 8999999987531
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHH
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIE 190 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~a 190 (449)
.++.++|++|++.+++.+||.||+.+...... .....+..+++.++++.+|+++..++++..||||||||++||+|
T Consensus 73 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~a 150 (240)
T PRK09493 73 RLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVR--GASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARA 150 (240)
T ss_pred HHHhhceEEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHH
Confidence 13469999999999999999999988642111 22334455678899999999988999999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 191 ILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 191 L~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
|+.+|++++|||||+|||+.++..+.+.|+++++ .|. |||++||++ .++..+||++++|++|++++.|++++.
T Consensus 151 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~--tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 223 (240)
T PRK09493 151 LAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE-EGM--TMVIVTHEI-GFAEKVASRLIFIDKGRIAEDGDPQVL 223 (240)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-cCC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEeeCCHHHH
Confidence 9999999999999999999999999999999974 355 999999997 578889999999999999999988765
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-46 Score=361.77 Aligned_cols=215 Identities=28% Similarity=0.458 Sum_probs=187.6
Q ss_pred EEEEeeEEEEeecCcccc-cceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 38 LTWKDLTVTIVSNGKKGS-SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
++++|+++.| ++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 1 l~~~~l~~~~------~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~ 71 (242)
T cd03295 1 IEFENVTKRY------GGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPV 71 (242)
T ss_pred CEEEEEEEEe------CCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCeEcCcCChH
Confidence 4688999983 23 56999999999999999999999999999999999998774 8999999987531
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch--hhCccCCCCChHHHHHHHHHH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD--AMNTRIRRLSGGQKRRVSISI 189 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~~~~LSgGerqRv~ia~ 189 (449)
..+.++|++|++.+++.+||+||+.+..... ........+++.++++.+|+.+ ..++++.+|||||||||+||+
T Consensus 72 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~lar 148 (242)
T cd03295 72 ELRRKIGYVIQQIGLFPHMTVEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVAR 148 (242)
T ss_pred HhhcceEEEccCccccCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHH
Confidence 1246899999999999999999998875432 2233445567889999999985 789999999999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 190 EILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 190 aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
||+.+|+++||||||+|||+.++..+.+.|++++++.|. |||++||++ .++..+||++++|++|++++.|+++++
T Consensus 149 al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~--tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 223 (242)
T cd03295 149 ALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGK--TIVFVTHDI-DEAFRLADRIAIMKNGEIVQVGTPDEI 223 (242)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCC--EEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999999999999999999865455 999999997 478899999999999999999988765
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-46 Score=358.78 Aligned_cols=215 Identities=30% Similarity=0.534 Sum_probs=186.8
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----c
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----A 113 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----~ 113 (449)
++++|+++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|+.+|. +|+|.++|.+... .
T Consensus 2 l~~~~l~~~~------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~i~~~~~~~ 72 (236)
T TIGR03864 2 LEVAGLSFAY------GARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRRAPRAA 72 (236)
T ss_pred EEEEeeEEEE------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcccCChhh
Confidence 6899999983 3457999999999999999999999999999999999998774 8999999986531 1
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh
Q 044030 114 YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT 193 (449)
Q Consensus 114 ~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~ 193 (449)
.+.++|++|++.+++.+|++||+.+....+ ........+.+.++++.+||.+..++++..||||||||++||+||+.
T Consensus 73 ~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~ 149 (236)
T TIGR03864 73 LARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLH 149 (236)
T ss_pred hhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 246999999999888999999998765432 22334445678899999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
+|+++||||||+|||+.++..+.+.|++++++.|. |||++||++. ++. .||++++|++|+++..|+++++.
T Consensus 150 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~--tiii~sH~~~-~~~-~~d~i~~l~~G~i~~~~~~~~~~ 220 (236)
T TIGR03864 150 RPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGL--SVLWATHLVD-EIE-ADDRLVVLHRGRVLADGAAAELR 220 (236)
T ss_pred CCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCC--EEEEEecChh-hHh-hCCEEEEEeCCeEEEeCCHHHHH
Confidence 99999999999999999999999999999854455 9999999974 565 59999999999999999887654
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-46 Score=357.82 Aligned_cols=212 Identities=28% Similarity=0.445 Sum_probs=184.0
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
|+++||++.| +++.+|+|+||++++||++||+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 1 l~~~~l~~~~------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~ 71 (222)
T cd03224 1 LEVENLNAGY------GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPPHE 71 (222)
T ss_pred CEEeeEEeec------CCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCCCCHHH
Confidence 4689999883 3457999999999999999999999999999999999999774 8999999987531
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHc-CCchhhCccCCCCChHHHHHHHHHHH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREM-GLQDAMNTRIRRLSGGQKRRVSISIE 190 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~~~~LSgGerqRv~ia~a 190 (449)
..+.++|++|++.+++.+|++||+.+...... ..+.+.++.++++.+ ++.+..++++.+||||||||++||+|
T Consensus 72 ~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~lara 146 (222)
T cd03224 72 RARAGIGYVPEGRRIFPELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARA 146 (222)
T ss_pred HHhcCeEEeccccccCCCCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHH
Confidence 12469999999999999999999988754321 122345567788888 58888899999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 191 ILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 191 L~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
|+.+|++++|||||+|||+.++..+++.|+++++ .|. |||++||++ .++..+||++++|++|+++..|+++++
T Consensus 147 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~--tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (222)
T cd03224 147 LMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD-EGV--TILLVEQNA-RFALEIADRAYVLERGRVVLEGTAAEL 219 (222)
T ss_pred HhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCC--EEEEEeCCH-HHHHHhccEEEEeeCCeEEEeCCHHHH
Confidence 9999999999999999999999999999999985 444 999999996 578899999999999999999987654
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-46 Score=357.35 Aligned_cols=216 Identities=23% Similarity=0.361 Sum_probs=184.1
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc---
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA--- 113 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~--- 113 (449)
.++++||++.| .. ....+.+|+|+||+|++||+++|+||||||||||+++|+|+++| .+|+|+++|++....
T Consensus 5 ~l~~~~l~~~~-~~-~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~i~~~~~~ 79 (233)
T PRK11629 5 LLQCDNLCKRY-QE-GSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP---TSGDVIFNGQPMSKLSSA 79 (233)
T ss_pred eEEEEeEEEEc-CC-CCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEEcCcCCHH
Confidence 58999999983 21 10125699999999999999999999999999999999999877 489999999875310
Q ss_pred ------cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHH
Q 044030 114 ------YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSI 187 (449)
Q Consensus 114 ------~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i 187 (449)
.+.++|++|++.+++.+|++||+.+..... .....+.++++.++++.+||.+..++++.+||||||||++|
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~l 156 (233)
T PRK11629 80 AKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAI 156 (233)
T ss_pred HHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHH
Confidence 146999999999999999999999875432 22334455678899999999999999999999999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecCh
Q 044030 188 SIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264 (449)
Q Consensus 188 a~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~ 264 (449)
|+||+.+|+++||||||+|||+.++..+.+.|++++++.|. |||++||++ +++.. +|++++|++|++++.++.
T Consensus 157 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~--tvii~sH~~-~~~~~-~~~~~~l~~G~i~~~~~~ 229 (233)
T PRK11629 157 ARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGT--AFLVVTHDL-QLAKR-MSRQLEMRDGRLTAELSL 229 (233)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCC--EEEEEeCCH-HHHHh-hCEEEEEECCEEEEEecc
Confidence 99999999999999999999999999999999999754555 999999997 45655 589999999999988763
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-46 Score=384.57 Aligned_cols=218 Identities=27% Similarity=0.441 Sum_probs=190.9
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.|+++||++.| +++.+|+|+||++++||+++|+||||||||||||+|+|+++|. +|+|.++|++...
T Consensus 3 ~L~~~nls~~y------~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~---sG~I~l~G~~i~~~~~~ 73 (402)
T PRK09536 3 MIDVSDLSVEF------GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDDVEALSAR 73 (402)
T ss_pred eEEEeeEEEEE------CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEEcCcCCHH
Confidence 58999999983 4568999999999999999999999999999999999999874 8999999987532
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCC-CCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLP-DTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIE 190 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~a 190 (449)
..+.++||+|+..+++.+||+||+.++...+.. ........+++++++++.+|+.+..++++.+|||||||||+||||
T Consensus 74 ~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArA 153 (402)
T PRK09536 74 AASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARA 153 (402)
T ss_pred HHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHH
Confidence 135799999999999999999999886432210 011123445678999999999999999999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 191 ILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 191 L~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
|+++|++|||||||+|||+.++..++++|+++++ .|. |||++||++ +++.++||++++|++|++++.|+++++
T Consensus 154 L~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~g~--TIIivsHdl-~~~~~~adrii~l~~G~iv~~G~~~ev 226 (402)
T PRK09536 154 LAQATPVLLLDEPTASLDINHQVRTLELVRRLVD-DGK--TAVAAIHDL-DLAARYCDELVLLADGRVRAAGPPADV 226 (402)
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCC--EEEEEECCH-HHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999985 455 999999996 578999999999999999999999874
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-46 Score=371.74 Aligned_cols=221 Identities=25% Similarity=0.333 Sum_probs=187.3
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecc-----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKA----- 111 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~----- 111 (449)
.|+++||++.| ..+......+|+||||+|++||++||+||||||||||+++|+|+++|. +|+|+++|.+..
T Consensus 2 ~i~~~~l~~~y-~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~~~~~~~~ 77 (305)
T PRK13651 2 QIKVKNIVKIF-NKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD---TGTIEWIFKDEKNKKKT 77 (305)
T ss_pred EEEEEEEEEEE-CCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEEeceeccccccc
Confidence 48999999983 211111246999999999999999999999999999999999999874 899999986431
Q ss_pred ------------------------cccCcEEEEcCCC-CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCC
Q 044030 112 ------------------------LAYGTSAYVTQDD-TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGL 166 (449)
Q Consensus 112 ------------------------~~~~~i~yv~Q~~-~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 166 (449)
...+.+|||+|++ ..+...||+||+.|+.... +.+.++..+++.++++.+||
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL 154 (305)
T PRK13651 78 KEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKYIELVGL 154 (305)
T ss_pred ccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCC
Confidence 0124699999985 2334569999999876532 34555666788999999999
Q ss_pred c-hhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHh
Q 044030 167 Q-DAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQ 245 (449)
Q Consensus 167 ~-~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~ 245 (449)
. +..++++..|||||||||+||++|+.+|++|||||||+|||+.++..+++.|+++++ .|. |||++||++ +.+.+
T Consensus 155 ~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~--tiiivtHd~-~~~~~ 230 (305)
T PRK13651 155 DESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK-QGK--TIILVTHDL-DNVLE 230 (305)
T ss_pred ChhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCC--EEEEEeeCH-HHHHH
Confidence 6 789999999999999999999999999999999999999999999999999999984 455 999999996 57889
Q ss_pred hcCeEEEeeCCeEEEecChhhHH
Q 044030 246 LFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 246 ~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
+||++++|++|++++.|+++++.
T Consensus 231 ~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 231 WTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred hCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999998764
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-46 Score=374.62 Aligned_cols=226 Identities=23% Similarity=0.359 Sum_probs=193.7
Q ss_pred CeeEEEEeeEEEEeecCc--------ccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEEC
Q 044030 35 GVFLTWKDLTVTIVSNGK--------KGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILIN 106 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~--------~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~ 106 (449)
...|+++||+++| ..+. .+...+|+||||+|++||+++|+|+||||||||+++|+|+++| .+|+|.++
T Consensus 6 ~~~l~v~~l~~~~-~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p---~~G~I~~~ 81 (331)
T PRK15079 6 KVLLEVADLKVHF-DIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKA---TDGEVAWL 81 (331)
T ss_pred CceEEEeCeEEEE-CCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC---CCcEEEEC
Confidence 4579999999984 2111 1235799999999999999999999999999999999999977 48999999
Q ss_pred CEeccc--------ccCcEEEEcCCC--CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccCC
Q 044030 107 GHKKAL--------AYGTSAYVTQDD--TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRIR 175 (449)
Q Consensus 107 g~~~~~--------~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~ 175 (449)
|.+... .++.++||+|++ .++|.+||.||+.+......+ ..+.++.++++.++++.+||. +.+++++.
T Consensus 82 G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~-~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~ 160 (331)
T PRK15079 82 GKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHP-KLSRQEVKDRVKAMMLKVGLLPNLINRYPH 160 (331)
T ss_pred CEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCChHHhcCCcc
Confidence 987531 135699999997 588999999999987643311 234556667788999999994 57899999
Q ss_pred CCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeC
Q 044030 176 RLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSA 255 (449)
Q Consensus 176 ~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~ 255 (449)
+|||||||||+||+||+.+|++||+||||+|||+.++..+++.|+++.++.|. |||++|||+ ..+..+||++++|++
T Consensus 161 ~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~--til~iTHdl-~~~~~~~dri~vl~~ 237 (331)
T PRK15079 161 EFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGL--SLIFIAHDL-AVVKHISDRVLVMYL 237 (331)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCC--EEEEEeCCH-HHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999999866666 999999996 578889999999999
Q ss_pred CeEEEecChhhHH
Q 044030 256 GQTVYFGPATAAN 268 (449)
Q Consensus 256 G~iv~~g~~~~~~ 268 (449)
|++++.|+++++.
T Consensus 238 G~ive~g~~~~i~ 250 (331)
T PRK15079 238 GHAVELGTYDEVY 250 (331)
T ss_pred CEEEEEcCHHHHH
Confidence 9999999987663
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-46 Score=359.59 Aligned_cols=212 Identities=29% Similarity=0.443 Sum_probs=182.1
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCC-----CCCCCceeEEEECCEeccc
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRL-----GSDTRQTGKILINGHKKAL 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~-----~~~~~~~G~I~~~g~~~~~ 112 (449)
|+++||++.| +.+.+|+|+||++++||+++|+||||||||||+++|+|++ +| .+|+|.++|++...
T Consensus 1 i~~~~l~~~~------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~---~~G~i~~~g~~~~~ 71 (227)
T cd03260 1 IELRDLNVYY------GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP---DEGEVLLDGKDIYD 71 (227)
T ss_pred CEEEEEEEEc------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCC---CCeEEEECCEEhhh
Confidence 4689999983 3457999999999999999999999999999999999998 55 48999999987521
Q ss_pred -------ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCcc--CCCCChHHHH
Q 044030 113 -------AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTR--IRRLSGGQKR 183 (449)
Q Consensus 113 -------~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~--~~~LSgGerq 183 (449)
..+.++|++|++.++ .+||+||+.++..... .....+.++++.++++.+|+.+..+++ +.+|||||||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~q 148 (227)
T cd03260 72 LDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQ 148 (227)
T ss_pred cchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHH
Confidence 124699999999888 7899999988754321 112223456788999999999887777 5999999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
|++||+||+.+|+++||||||+|||+.++..+++.|++++++ . |||++||++ .++..+||++++|++|++++.|+
T Consensus 149 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~--tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~ 223 (227)
T cd03260 149 RLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE--Y--TIVIVTHNM-QQAARVADRTAFLLNGRLVEFGP 223 (227)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC--c--EEEEEeccH-HHHHHhCCEEEEEeCCEEEEecC
Confidence 999999999999999999999999999999999999999753 5 999999997 57888999999999999999998
Q ss_pred hhh
Q 044030 264 ATA 266 (449)
Q Consensus 264 ~~~ 266 (449)
+++
T Consensus 224 ~~~ 226 (227)
T cd03260 224 TEQ 226 (227)
T ss_pred ccc
Confidence 754
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-46 Score=349.82 Aligned_cols=216 Identities=27% Similarity=0.431 Sum_probs=190.5
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
+|+++||+..| |..++|++|||++++||+++|+||||||||||||+|+|+.++ .+|+|.++|++++.
T Consensus 3 mL~v~~l~~~Y------G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~---~~G~I~~~G~dit~~p~~ 73 (237)
T COG0410 3 MLEVENLSAGY------GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRP---RSGRIIFDGEDITGLPPH 73 (237)
T ss_pred ceeEEeEeecc------cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCeeEEECCeecCCCCHH
Confidence 58999999873 678999999999999999999999999999999999999977 38999999998642
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHc-CCchhhCccCCCCChHHHHHHHHHH
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREM-GLQDAMNTRIRRLSGGQKRRVSISI 189 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~~~~LSgGerqRv~ia~ 189 (449)
.+..++||||...+||.|||+|||..++..... +...+...+++.+.| .|.+..+++.+.|||||||.++|||
T Consensus 74 ~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaR 149 (237)
T COG0410 74 ERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIAR 149 (237)
T ss_pred HHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHH
Confidence 235799999999999999999999988654311 111222277888888 5889999999999999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 190 EILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 190 aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
||+.+|++|+|||||.||-|.-..+|.+.|++++++.|. ||+++-++. ..+.+++||.++|.+|+++++|+++++.
T Consensus 150 ALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~--tIlLVEQn~-~~Al~iaDr~yvle~Griv~~G~~~eL~ 225 (237)
T COG0410 150 ALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGM--TILLVEQNA-RFALEIADRGYVLENGRIVLSGTAAELL 225 (237)
T ss_pred HHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCc--EEEEEeccH-HHHHHhhCEEEEEeCCEEEEecCHHHHh
Confidence 999999999999999999999999999999999976555 999998885 5789999999999999999999998774
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-46 Score=364.82 Aligned_cols=216 Identities=24% Similarity=0.340 Sum_probs=187.2
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.|+++|+++.| . +.+.+|+|+||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~-~----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~ 75 (274)
T PRK13647 4 IIEVEDLHFRY-K----DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ---RGRVKVMGREVNAENEK 75 (274)
T ss_pred eEEEEEEEEEe-C----CCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHH
Confidence 58999999983 1 2356999999999999999999999999999999999999774 8999999987532
Q ss_pred -ccCcEEEEcCCCC-CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHH
Q 044030 113 -AYGTSAYVTQDDT-LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIE 190 (449)
Q Consensus 113 -~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~a 190 (449)
..+.++|++|++. .++..||.||+.|+.... +.+..+.++++.++++.+||.+..++++..|||||||||+||+|
T Consensus 76 ~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~lara 152 (274)
T PRK13647 76 WVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGV 152 (274)
T ss_pred HHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHH
Confidence 1246999999963 445679999999875432 23344555678899999999999999999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 191 ILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 191 L~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
|+.+|++|||||||+|||+.++..+++.|++++++ |. |||++||++ +.+.++||++++|++|++++.|+++.+
T Consensus 153 L~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-g~--tili~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 153 LAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQ-GK--TVIVATHDV-DLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHC-CC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 99999999999999999999999999999999854 55 999999996 578889999999999999999998653
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-46 Score=368.69 Aligned_cols=222 Identities=24% Similarity=0.356 Sum_probs=188.8
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
|.++++||++.| ..+....+.+|+||||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|.++..
T Consensus 1 ~~l~~~~l~~~y-~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~i~~~~~ 76 (286)
T PRK13646 1 MTIRFDNVSYTY-QKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT---TGTVTVDDITITHKTK 76 (286)
T ss_pred CEEEEEEEEEEE-CCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccc
Confidence 358999999983 211111246999999999999999999999999999999999999774 8999999987521
Q ss_pred ------ccCcEEEEcCCC--CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccCCCCChHHHH
Q 044030 113 ------AYGTSAYVTQDD--TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSGGQKR 183 (449)
Q Consensus 113 ------~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGerq 183 (449)
.++.+|||||++ .+++ .||.||+.|+.... ..+..+..+++.++++.+||. +..++.+..|||||||
T Consensus 77 ~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~q 152 (286)
T PRK13646 77 DKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMR 152 (286)
T ss_pred cchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHH
Confidence 134699999986 4555 49999999875432 234455567789999999997 7889999999999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
||+||+||+.+|+++||||||+|||+.++..+.+.|++++++.|. |||++||++ +++.++||++++|++|++++.|+
T Consensus 153 rv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~--tvl~vtH~~-~~~~~~~dri~~l~~G~i~~~g~ 229 (286)
T PRK13646 153 KIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENK--TIILVSHDM-NEVARYADEVIVMKEGSIVSQTS 229 (286)
T ss_pred HHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCC--EEEEEecCH-HHHHHhCCEEEEEECCEEEEECC
Confidence 999999999999999999999999999999999999999865555 999999996 57889999999999999999999
Q ss_pred hhhHH
Q 044030 264 ATAAN 268 (449)
Q Consensus 264 ~~~~~ 268 (449)
++++.
T Consensus 230 ~~~~~ 234 (286)
T PRK13646 230 PKELF 234 (286)
T ss_pred HHHHH
Confidence 87754
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-47 Score=364.61 Aligned_cols=224 Identities=27% Similarity=0.393 Sum_probs=201.7
Q ss_pred eeEEEEeeEEEEeec----------C--------cccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCC
Q 044030 36 VFLTWKDLTVTIVSN----------G--------KKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDT 97 (449)
Q Consensus 36 ~~l~~~nls~~~~~~----------~--------~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~ 97 (449)
+.++++|+++-+-.. + +.+...-++|+||+++.|||+.|||-||||||||+++|.++..|
T Consensus 3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiep-- 80 (386)
T COG4175 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEP-- 80 (386)
T ss_pred ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCC--
Confidence 357889998863110 1 12334568999999999999999999999999999999999987
Q ss_pred CceeEEEECCEecc---------cccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch
Q 044030 98 RQTGKILINGHKKA---------LAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD 168 (449)
Q Consensus 98 ~~~G~I~~~g~~~~---------~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~ 168 (449)
++|+|+++|.++. .+++.+++|||...|+|+.||.||..|+..++ +.++++.++++.++|+.+||+.
T Consensus 81 -t~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~ 156 (386)
T COG4175 81 -TRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEG 156 (386)
T ss_pred -CCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchh
Confidence 4999999998742 23467999999999999999999999998886 6788999999999999999999
Q ss_pred hhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcC
Q 044030 169 AMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFH 248 (449)
Q Consensus 169 ~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D 248 (449)
+.+++|++|||||||||.|||||+.+|+|||+|||+|+|||--+.++.+.|.++.++.++ |||++|||. +|++++.|
T Consensus 157 ~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~K--TIvFitHDL-dEAlriG~ 233 (386)
T COG4175 157 YADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKK--TIVFITHDL-DEALRIGD 233 (386)
T ss_pred hhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCC--eEEEEecCH-HHHHhccc
Confidence 999999999999999999999999999999999999999999999999999999888766 999999996 68999999
Q ss_pred eEEEeeCCeEEEecChhhHH
Q 044030 249 NLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 249 ~v~~l~~G~iv~~g~~~~~~ 268 (449)
||.+|++|+++..|+|+++.
T Consensus 234 rIaimkdG~ivQ~Gtp~eIl 253 (386)
T COG4175 234 RIAIMKDGEIVQVGTPEEIL 253 (386)
T ss_pred eEEEecCCeEEEeCCHHHHH
Confidence 99999999999999999885
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-46 Score=360.85 Aligned_cols=216 Identities=30% Similarity=0.412 Sum_probs=187.6
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
+++++||++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++| .+|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~ 73 (250)
T PRK11264 3 AIEVKNLVKKF------HGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQP---EAGTIRVGDITIDTARSL 73 (250)
T ss_pred cEEEeceEEEE------CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCeEEEECCEEccccccc
Confidence 48999999983 345799999999999999999999999999999999999876 48999999986421
Q ss_pred ---------ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHH
Q 044030 113 ---------AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKR 183 (449)
Q Consensus 113 ---------~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerq 183 (449)
..+.++|++|++.+++.+|+.||+.++..... ........+++.++++.+||.+..++++.+|||||||
T Consensus 74 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~q 151 (250)
T PRK11264 74 SQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQ 151 (250)
T ss_pred cchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHH
Confidence 12469999999999999999999987543211 1233444567889999999998899999999999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
||+||+||+.+|++|||||||+|||+.++..+.+.|++++++ |. |||++||++ .++.++||++++|++|++++.|+
T Consensus 152 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~--tvi~~tH~~-~~~~~~~d~i~~l~~G~i~~~~~ 227 (250)
T PRK11264 152 RVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQE-KR--TMVIVTHEM-SFARDVADRAIFMDQGRIVEQGP 227 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhc-CC--EEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999999999999854 55 999999996 57889999999999999999998
Q ss_pred hhhH
Q 044030 264 ATAA 267 (449)
Q Consensus 264 ~~~~ 267 (449)
++++
T Consensus 228 ~~~~ 231 (250)
T PRK11264 228 AKAL 231 (250)
T ss_pred HHHH
Confidence 8765
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-46 Score=354.58 Aligned_cols=205 Identities=29% Similarity=0.496 Sum_probs=180.1
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---cc
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---AY 114 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---~~ 114 (449)
|+++|+++.| +++.+|+|+||++++|++++|+||||||||||+++|+|+++| .+|+|.++|.+... ..
T Consensus 1 l~~~~l~~~~------~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~~ 71 (208)
T cd03268 1 LKTNDLTKTY------GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKP---DSGEITFDGKSYQKNIEAL 71 (208)
T ss_pred CEEEEEEEEE------CCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC---CceEEEECCCcccchHHHH
Confidence 4689999983 345799999999999999999999999999999999999877 48999999986531 13
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhC
Q 044030 115 GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTR 194 (449)
Q Consensus 115 ~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~ 194 (449)
+.++|++|++.+++.+||.||+.+..... .. .+++++++++.+++.+..++++.+|||||||||+||+||+.+
T Consensus 72 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 144 (208)
T cd03268 72 RRIGALIEAPGFYPNLTARENLRLLARLL---GI----RKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGN 144 (208)
T ss_pred hhEEEecCCCccCccCcHHHHHHHHHHhc---CC----cHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcC
Confidence 46999999999999999999998875432 11 134678899999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 195 PKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 195 P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
|+++||||||+|||+.++..+.+.|+++++ .|. |||++||++ .++..+||++++|++|++++.|
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~--tii~~tH~~-~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 145 PDLLILDEPTNGLDPDGIKELRELILSLRD-QGI--TVLISSHLL-SEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCC--EEEEEcCCH-HHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999985 444 999999996 4788899999999999998765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-46 Score=363.36 Aligned_cols=209 Identities=28% Similarity=0.379 Sum_probs=184.6
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccC
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYG 115 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~ 115 (449)
..|+++||++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|.+.....+
T Consensus 11 ~~l~i~~l~~~~------~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~ 81 (257)
T PRK11247 11 TPLLLNAVSKRY------GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS---AGELLAGTAPLAEARE 81 (257)
T ss_pred CcEEEEEEEEEE------CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEHHHhhC
Confidence 458999999983 3457999999999999999999999999999999999998774 8999999987543345
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCC
Q 044030 116 TSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRP 195 (449)
Q Consensus 116 ~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P 195 (449)
.++|++|++.+++.+||+||+.+... . ...+++.++++.+||.+..++++..||||||||++||+||+.+|
T Consensus 82 ~i~~v~q~~~l~~~~tv~enl~~~~~-----~----~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p 152 (257)
T PRK11247 82 DTRLMFQDARLLPWKKVIDNVGLGLK-----G----QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRP 152 (257)
T ss_pred ceEEEecCccCCCCCcHHHHHHhccc-----c----hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 79999999999998999999987521 0 12356788999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChh
Q 044030 196 KLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPAT 265 (449)
Q Consensus 196 ~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~ 265 (449)
+++||||||+|||+.++..+.+.|++++++.|. |||++||++ .++..+||++++|++|++++.|+.+
T Consensus 153 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~--tviivsHd~-~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 153 GLLLLDEPLGALDALTRIEMQDLIESLWQQHGF--TVLLVTHDV-SEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEeecccc
Confidence 999999999999999999999999999755555 999999996 4788899999999999999988653
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-46 Score=365.64 Aligned_cols=219 Identities=28% Similarity=0.412 Sum_probs=189.5
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.|+++||++.| . +.+.+.+|+|+||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~-~--~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~ 77 (279)
T PRK13650 4 IIEVKNLTFKY-K--EDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE---SGQIIIDGDLLTEENVW 77 (279)
T ss_pred eEEEEeEEEEc-C--CCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHH
Confidence 58999999983 2 112246999999999999999999999999999999999999774 8999999987532
Q ss_pred -ccCcEEEEcCCC-CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHH
Q 044030 113 -AYGTSAYVTQDD-TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIE 190 (449)
Q Consensus 113 -~~~~i~yv~Q~~-~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~a 190 (449)
..+.++|++|++ ..++.+||+||+.|+.... +.+.++..+++.++++.+||.+..++.+..||||||||++||+|
T Consensus 78 ~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAra 154 (279)
T PRK13650 78 DIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGA 154 (279)
T ss_pred HHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHH
Confidence 124699999997 4677789999999875432 23455556778999999999999999999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 191 ILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 191 L~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
|+.+|++|||||||+|||+.++..+++.|++++++.|. |||++||++. ++ ..||++++|++|+++..|++++..
T Consensus 155 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~--tilivtH~~~-~~-~~~dri~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13650 155 VAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQM--TVISITHDLD-EV-ALSDRVLVMKNGQVESTSTPRELF 228 (279)
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCC--EEEEEecCHH-HH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999999865565 9999999974 56 589999999999999999987754
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-46 Score=353.00 Aligned_cols=207 Identities=30% Similarity=0.505 Sum_probs=180.8
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----c
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----A 113 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----~ 113 (449)
|+++|+++.| +++.+|+|+||++++| +++|+||||||||||+++|+|+++|. +|+|.++|.+... .
T Consensus 1 i~~~~~~~~~------~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~ 70 (211)
T cd03264 1 LQLENLTKRY------GKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQKL 70 (211)
T ss_pred CEEEEEEEEE------CCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCCccccchHHH
Confidence 4689999983 3457999999999999 99999999999999999999998774 8999999976432 1
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh
Q 044030 114 YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT 193 (449)
Q Consensus 114 ~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~ 193 (449)
.+.++|++|++.+++.+||.||+.+..... ..+..+..+.+.++++.+|+.+..++++.+|||||||||+||+||+.
T Consensus 71 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 147 (211)
T cd03264 71 RRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVG 147 (211)
T ss_pred HhheEEecCCCcccccCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhc
Confidence 356999999999999999999998876543 12233445678899999999998999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
+|+++||||||+|||+.++..+.+.|+++++ +. |||++||++ .++.++||++++|++|++++.|
T Consensus 148 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~--tii~vsH~~-~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 148 DPSILIVDEPTAGLDPEERIRFRNLLSELGE--DR--IVILSTHIV-EDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--CC--EEEEEcCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999974 34 999999996 4688899999999999998765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-46 Score=353.54 Aligned_cols=205 Identities=30% Similarity=0.475 Sum_probs=179.0
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
|+++|+++.| . +++.+|+|+||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 2 l~~~~l~~~~-~----~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~ 73 (214)
T TIGR02673 2 IEFHNVSKAY-P----GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRLRGRQ 73 (214)
T ss_pred EEEEeeeEEe-C----CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHH
Confidence 7899999983 1 2357999999999999999999999999999999999998764 8999999987531
Q ss_pred ---ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHH
Q 044030 113 ---AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISI 189 (449)
Q Consensus 113 ---~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~ 189 (449)
..+.++|++|++.+++.+|+.||+.+..... .......++++.++++.+++.+..++.+.+|||||||||+||+
T Consensus 74 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~ 150 (214)
T TIGR02673 74 LPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVR---GKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIAR 150 (214)
T ss_pred HHHHHhheEEEecChhhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHH
Confidence 1246999999999999999999999875432 1233444567889999999998889999999999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCe
Q 044030 190 EILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQ 257 (449)
Q Consensus 190 aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~ 257 (449)
||+.+|+++||||||+|||+.++..+.+.|+++++ .|. |||++||++ .++..+||++++|++|+
T Consensus 151 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~--tii~~tH~~-~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 151 AIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK-RGT--TVIVATHDL-SLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-cCC--EEEEEeCCH-HHHHHhcCEEEEecCCC
Confidence 99999999999999999999999999999999975 455 999999997 57888999999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-46 Score=366.07 Aligned_cols=214 Identities=26% Similarity=0.406 Sum_probs=186.7
Q ss_pred EEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc------
Q 044030 39 TWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL------ 112 (449)
Q Consensus 39 ~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~------ 112 (449)
.++|+++.| +.+.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 26 ~~~~~~~~~------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~---~G~i~i~g~~~~~~~~~~~ 96 (269)
T cd03294 26 SKEEILKKT------GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT---SGKVLIDGQDIAAMSRKEL 96 (269)
T ss_pred hhhhhhhhc------CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccChhhh
Confidence 456777762 5677999999999999999999999999999999999999774 8999999986531
Q ss_pred ---ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHH
Q 044030 113 ---AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISI 189 (449)
Q Consensus 113 ---~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~ 189 (449)
..+.++|++|++.+++.+||.||+.+..... ........+++.++++.+||.+..++++.+|||||||||+||+
T Consensus 97 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAr 173 (269)
T cd03294 97 RELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLAR 173 (269)
T ss_pred hhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHH
Confidence 1246999999999999999999999875432 1233444567889999999999999999999999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 190 EILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 190 aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
||+.+|++|||||||+|||+.++..+.+.|++++++.|. |||++||++ .++.++||++++|++|++++.|+++++
T Consensus 174 al~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~--tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 248 (269)
T cd03294 174 ALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQK--TIVFITHDL-DEALRLGDRIAIMKDGRLVQVGTPEEI 248 (269)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCC--EEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999855555 999999996 578899999999999999999988765
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-46 Score=380.63 Aligned_cols=205 Identities=25% Similarity=0.390 Sum_probs=182.5
Q ss_pred ccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---------ccCcEEEEcCCCC
Q 044030 55 SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---------AYGTSAYVTQDDT 125 (449)
Q Consensus 55 ~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---------~~~~i~yv~Q~~~ 125 (449)
...+|+|+||+|++||+++|+||||||||||||+|+|+++|. +|+|+++|.++.. .++.++|++|++.
T Consensus 40 ~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~---sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~ 116 (400)
T PRK10070 40 LSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT---RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFA 116 (400)
T ss_pred CeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCc
Confidence 345899999999999999999999999999999999999874 8999999987531 1246999999999
Q ss_pred CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 044030 126 LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTS 205 (449)
Q Consensus 126 l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPts 205 (449)
+++.+||.||+.+....+ +.+..+.++++.++++.+||.+..++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 117 l~~~~Tv~enl~~~~~~~---~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts 193 (400)
T PRK10070 117 LMPHMTVLDNTAFGMELA---GINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFS 193 (400)
T ss_pred CCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 999999999999986543 23344556678899999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 206 GLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 206 gLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
|||+.++..+.+.|++++++.|+ |||++||++ +++.++||++++|++|+++..|+++++.
T Consensus 194 ~LD~~~r~~l~~~L~~l~~~~g~--TIIivTHd~-~~~~~~~Dri~vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 194 ALDPLIRTEMQDELVKLQAKHQR--TIVFISHDL-DEAMRIGDRIAIMQNGEVVQVGTPDEIL 253 (400)
T ss_pred cCCHHHHHHHHHHHHHHHHHCCC--eEEEEECCH-HHHHHhCCEEEEEECCEEEecCCHHHHH
Confidence 99999999999999999765555 999999996 5788999999999999999999987653
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=370.01 Aligned_cols=222 Identities=24% Similarity=0.344 Sum_probs=187.9
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc--
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-- 112 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-- 112 (449)
+..|+++|+++.| ..+....+.+|+||||+|++||++||+||||||||||+++|+|+++|. +|+|+++|.+...
T Consensus 19 ~~~l~~~nl~~~y-~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~---~G~I~i~g~~~~~~~ 94 (320)
T PRK13631 19 DIILRVKNLYCVF-DEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK---YGTIQVGDIYIGDKK 94 (320)
T ss_pred CceEEEEeEEEEe-CCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCEEccccc
Confidence 3469999999983 211111246999999999999999999999999999999999999874 8999999976421
Q ss_pred -------------------ccCcEEEEcCCC--CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhh
Q 044030 113 -------------------AYGTSAYVTQDD--TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAM 170 (449)
Q Consensus 113 -------------------~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~ 170 (449)
.++.++||+|++ .+++ .||+||+.|+.... ..+..+..+++.++++.+||. +..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~ 170 (320)
T PRK13631 95 NNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLDDSYL 170 (320)
T ss_pred ccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCChhHh
Confidence 124699999987 4665 49999998875322 234455566788999999997 688
Q ss_pred CccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeE
Q 044030 171 NTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNL 250 (449)
Q Consensus 171 ~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v 250 (449)
++.+.+|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++++ .|. |||++||++ +++..+||++
T Consensus 171 ~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~-~g~--TiiivtHd~-~~~~~~adri 246 (320)
T PRK13631 171 ERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA-NNK--TVFVITHTM-EHVLEVADEV 246 (320)
T ss_pred cCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCC--EEEEEecCH-HHHHHhCCEE
Confidence 999999999999999999999999999999999999999999999999999974 455 999999996 4688999999
Q ss_pred EEeeCCeEEEecChhhHH
Q 044030 251 CLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 251 ~~l~~G~iv~~g~~~~~~ 268 (449)
++|++|+++..|+++++.
T Consensus 247 ~vl~~G~i~~~g~~~~~~ 264 (320)
T PRK13631 247 IVMDKGKILKTGTPYEIF 264 (320)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999998763
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-46 Score=358.95 Aligned_cols=216 Identities=25% Similarity=0.393 Sum_probs=186.1
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeccc---
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDT--RQTGKILINGHKKAL--- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~--~~~G~I~~~g~~~~~--- 112 (449)
++++||++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|+++|.. ..+|+|.++|.+...
T Consensus 2 l~~~~l~~~~------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~ 75 (247)
T TIGR00972 2 IEIENLNLFY------GEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKI 75 (247)
T ss_pred EEEEEEEEEE------CCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEcccccc
Confidence 6899999983 34569999999999999999999999999999999999987621 128999999987531
Q ss_pred ----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc----hhhCccCCCCChHHHHH
Q 044030 113 ----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ----DAMNTRIRRLSGGQKRR 184 (449)
Q Consensus 113 ----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSgGerqR 184 (449)
..+.++|++|++.+++ +|+.||+.+....+. ..+..+..+.+.++++.+|+. +..++++++||||||||
T Consensus 76 ~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qr 152 (247)
T TIGR00972 76 DVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQR 152 (247)
T ss_pred chHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHH
Confidence 1346999999999888 999999998754321 123344556788999999998 78899999999999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecCh
Q 044030 185 VSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264 (449)
Q Consensus 185 v~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~ 264 (449)
|+||+||+.+|+++||||||+|||+.++..+++.|+++++ +. |||++||++ .++..+||++++|++|+++..|++
T Consensus 153 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~--tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~~~ 227 (247)
T TIGR00972 153 LCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--KY--TIVIVTHNM-QQAARISDRTAFFYDGELVEYGPT 227 (247)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cC--eEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999974 25 999999996 578899999999999999999988
Q ss_pred hhH
Q 044030 265 TAA 267 (449)
Q Consensus 265 ~~~ 267 (449)
+++
T Consensus 228 ~~~ 230 (247)
T TIGR00972 228 EQI 230 (247)
T ss_pred HHH
Confidence 765
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-46 Score=358.25 Aligned_cols=216 Identities=25% Similarity=0.458 Sum_probs=188.6
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
+++++||++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~------~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~ 73 (241)
T PRK10895 3 TLTAKNLAKAY------KGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD---AGNIIIDDEDISLLPLH 73 (241)
T ss_pred eEEEeCcEEEe------CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHH
Confidence 58899999983 3457999999999999999999999999999999999998774 8999999987532
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHH
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIE 190 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~a 190 (449)
..+.++|++|++.+++.+||.||+.+...... .....+.+.++.++++.+|+.+..+++++.|||||||||+||+|
T Consensus 74 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lara 151 (241)
T PRK10895 74 ARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARA 151 (241)
T ss_pred HHHHhCeEEeccCCcccccCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHH
Confidence 12469999999999999999999987643321 12233445678899999999998999999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 191 ILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 191 L~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
|+.+|++|||||||+|||+.++..+.+.|+++++ .|. |||++||++ .++..+||++++|++|++++.|+++++
T Consensus 152 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~--tiii~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 224 (241)
T PRK10895 152 LAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD-SGL--GVLITDHNV-RETLAVCERAYIVSQGHLIAHGTPTEI 224 (241)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCC--EEEEEEcCH-HHHHHhcCEEEEEeCCeEEeeCCHHHH
Confidence 9999999999999999999999999999999974 455 999999996 578899999999999999999988765
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-46 Score=357.93 Aligned_cols=216 Identities=26% Similarity=0.368 Sum_probs=186.6
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecc----
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKA---- 111 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~---- 111 (449)
|+|+++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+..
T Consensus 1 ~~l~~~~l~~~~------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~ 71 (242)
T PRK11124 1 MSIQLNGINCFY------GAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMP---RSGTLNIAGNHFDFSKT 71 (242)
T ss_pred CEEEEEeeEEEE------CCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEecccccc
Confidence 468999999983 345799999999999999999999999999999999999877 4899999998641
Q ss_pred -------cccCcEEEEcCCCCCCCCCCHHHHHHHHH-hccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHH
Q 044030 112 -------LAYGTSAYVTQDDTLITTLTVKEAVYYSA-QLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKR 183 (449)
Q Consensus 112 -------~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerq 183 (449)
...+.++|++|++.+++.+||.||+.+.. ... +....+...++.++++.+|+.+..++++.+|||||||
T Consensus 72 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~q 148 (242)
T PRK11124 72 PSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQ 148 (242)
T ss_pred cchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHH
Confidence 01246999999999999999999997532 221 1233344567889999999999999999999999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
|++||+||+.+|+++||||||+|||+.++..+.+.|+++++ .|. |||++||++ .++.++||++++|++|++++.|+
T Consensus 149 rv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~-~~~--tii~~sh~~-~~~~~~~d~i~~l~~g~i~~~~~ 224 (242)
T PRK11124 149 RVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE-TGI--TQVIVTHEV-EVARKTASRVVYMENGHIVEQGD 224 (242)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH-cCC--EEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999974 455 999999996 57788999999999999999998
Q ss_pred hhhH
Q 044030 264 ATAA 267 (449)
Q Consensus 264 ~~~~ 267 (449)
+++.
T Consensus 225 ~~~~ 228 (242)
T PRK11124 225 ASCF 228 (242)
T ss_pred HHHh
Confidence 7643
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-46 Score=352.48 Aligned_cols=206 Identities=26% Similarity=0.426 Sum_probs=179.0
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
++++|+++.| . +.+.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.++..
T Consensus 1 l~~~~l~~~~-~----~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~ 72 (214)
T cd03292 1 IEFINVTKTY-P----NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNGQDVSDLRGRA 72 (214)
T ss_pred CEEEEEEEEe-C----CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHH
Confidence 4688999983 1 2257999999999999999999999999999999999998774 8999999986531
Q ss_pred ---ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHH
Q 044030 113 ---AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISI 189 (449)
Q Consensus 113 ---~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~ 189 (449)
.++.++|++|++.+++.+|+.||+.+....+ ....++..+++.++++.+|+++..++++.+||||||||++||+
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lar 149 (214)
T cd03292 73 IPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVT---GVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIAR 149 (214)
T ss_pred HHHHHHheEEEecCchhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHH
Confidence 1246999999999999999999999876442 1233444567889999999999999999999999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeE
Q 044030 190 EILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQT 258 (449)
Q Consensus 190 aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~i 258 (449)
||+.+|+++||||||+|||+.++..+.+.|++++++ |. |||++||++ ..+..+||++++|++|++
T Consensus 150 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~--tiiivtH~~-~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 150 AIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKA-GT--TVVVATHAK-ELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHc-CC--EEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999744 55 999999996 578889999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-45 Score=370.60 Aligned_cols=225 Identities=26% Similarity=0.368 Sum_probs=190.9
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCC-CCceeEEEECCEeccc---
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSD-TRQTGKILINGHKKAL--- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~-~~~~G~I~~~g~~~~~--- 112 (449)
.|+++||++.| . ...+...+|+||||+|++||++||+|+||||||||+++|+|++++. .+.+|+|.++|+++..
T Consensus 3 ~L~v~~l~~~~-~-~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~ 80 (326)
T PRK11022 3 LLNVDKLSVHF-G-DESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE 80 (326)
T ss_pred eEEEeCeEEEE-C-CCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCH
Confidence 58999999983 2 1112257999999999999999999999999999999999998642 1358999999987521
Q ss_pred ------ccCcEEEEcCCC--CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch---hhCccCCCCChHH
Q 044030 113 ------AYGTSAYVTQDD--TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD---AMNTRIRRLSGGQ 181 (449)
Q Consensus 113 ------~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~~~~LSgGe 181 (449)
..+.++||||++ .+.|.+|+.+++........ ....++.++++.++++.+||.+ .+++++++|||||
T Consensus 81 ~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq 158 (326)
T PRK11022 81 KERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGM 158 (326)
T ss_pred HHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHH
Confidence 113699999997 57899999999877654321 2344556678899999999963 5789999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEe
Q 044030 182 KRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYF 261 (449)
Q Consensus 182 rqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~ 261 (449)
||||+||+||+.+|++||+||||+|||+.++..+++.|++++++.|. |+|++|||+ ..+..+||+|++|++|++++.
T Consensus 159 ~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~--til~iTHdl-~~~~~~adri~vm~~G~ive~ 235 (326)
T PRK11022 159 SQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENM--ALVLITHDL-ALVAEAAHKIIVMYAGQVVET 235 (326)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999866665 999999996 578889999999999999999
Q ss_pred cChhhHH
Q 044030 262 GPATAAN 268 (449)
Q Consensus 262 g~~~~~~ 268 (449)
|+++++.
T Consensus 236 g~~~~~~ 242 (326)
T PRK11022 236 GKAHDIF 242 (326)
T ss_pred CCHHHHh
Confidence 9988764
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-46 Score=352.34 Aligned_cols=210 Identities=26% Similarity=0.406 Sum_probs=178.6
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
|+++||++.| . +..+.+.+|+|+||++++||+++|+|||||||||||++|+|+++|. +|+|.++|.+...
T Consensus 2 l~~~~v~~~~-~-~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~ 76 (221)
T TIGR02211 2 LKCENLGKRY-Q-EGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT---SGEVLFNGQSLSKLSSNE 76 (221)
T ss_pred EEEEeeeEEc-c-CCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcCHhH
Confidence 6789999983 2 1111257999999999999999999999999999999999998774 8999999987531
Q ss_pred ----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHH
Q 044030 113 ----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSIS 188 (449)
Q Consensus 113 ----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia 188 (449)
..+.++|++|++.+++.+|++||+.+....+ .....+..+++.++++.+|+.+..++.+..|||||||||+||
T Consensus 77 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 153 (221)
T TIGR02211 77 RAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG---KKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIA 153 (221)
T ss_pred HHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHH
Confidence 0146999999999999999999998865432 122333455678999999999999999999999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEE
Q 044030 189 IEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTV 259 (449)
Q Consensus 189 ~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv 259 (449)
+||+.+|++|||||||+|||+.++..+.+.|++++++.|. |||++||++. .+ ..+|++++|++|+++
T Consensus 154 ral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~--tii~~tH~~~-~~-~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 154 RALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNT--SFLVVTHDLE-LA-KKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCC--EEEEEeCCHH-HH-hhcCEEEEEeCCEec
Confidence 9999999999999999999999999999999999865555 9999999974 55 458999999999875
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-45 Score=370.10 Aligned_cols=227 Identities=29% Similarity=0.397 Sum_probs=192.9
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc--
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-- 112 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-- 112 (449)
...|+++||++.| .. ..+...+|+||||+|++||+++|+|+||||||||+++|+|+++|....+|+|.++|.++..
T Consensus 10 ~~~L~i~~l~~~~-~~-~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~ 87 (330)
T PRK09473 10 DALLDVKDLRVTF-ST-PDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLP 87 (330)
T ss_pred CceEEEeCeEEEE-ec-CCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCC
Confidence 3468999999983 21 1134579999999999999999999999999999999999997732248999999987531
Q ss_pred -------ccCcEEEEcCCC--CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch---hhCccCCCCChH
Q 044030 113 -------AYGTSAYVTQDD--TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD---AMNTRIRRLSGG 180 (449)
Q Consensus 113 -------~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~~~~LSgG 180 (449)
..+.++||+|++ .++|.+|+.+++.+...... .....+..+++.++++.+||.+ ..++++++||||
T Consensus 88 ~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG 165 (330)
T PRK09473 88 EKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGG 165 (330)
T ss_pred HHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHH
Confidence 124699999998 68899999999987654431 2344555677899999999974 357899999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 181 erqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
|||||+||+||+.+|++||+||||+|||+.++..+++.|++++++.|. |+|++|||+ ..+.++||++++|++|++++
T Consensus 166 ~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~--til~iTHdl-~~~~~~~Dri~vm~~G~ive 242 (330)
T PRK09473 166 MRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNT--AIIMITHDL-GVVAGICDKVLVMYAGRTME 242 (330)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCC--EEEEEECCH-HHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999876666 999999996 57888999999999999999
Q ss_pred ecChhhHH
Q 044030 261 FGPATAAN 268 (449)
Q Consensus 261 ~g~~~~~~ 268 (449)
.|+++++.
T Consensus 243 ~g~~~~i~ 250 (330)
T PRK09473 243 YGNARDVF 250 (330)
T ss_pred ECCHHHHH
Confidence 99988764
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=365.30 Aligned_cols=220 Identities=25% Similarity=0.358 Sum_probs=186.9
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.|+++||++.| ..+....+.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|++...
T Consensus 2 ~i~~~~l~~~~-~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~ 77 (287)
T PRK13641 2 SIKFENVDYIY-SPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS---SGTITIAGYHITPETGN 77 (287)
T ss_pred EEEEEEEEEEc-CCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECcccccc
Confidence 57899999983 211001256999999999999999999999999999999999999874 9999999987521
Q ss_pred -----ccCcEEEEcCCC--CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccCCCCChHHHHH
Q 044030 113 -----AYGTSAYVTQDD--TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSGGQKRR 184 (449)
Q Consensus 113 -----~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGerqR 184 (449)
.++.++|++|++ .++ .+||.||+.++.... ....++..+++.++++.+||. +..++++++||||||||
T Consensus 78 ~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qr 153 (287)
T PRK13641 78 KNLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRR 153 (287)
T ss_pred chHHHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHH
Confidence 124699999997 345 579999998865432 233455566789999999997 68899999999999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecCh
Q 044030 185 VSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264 (449)
Q Consensus 185 v~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~ 264 (449)
++||+||+.+|++|||||||+|||+.++..+.+.|+++++ .|. |||++||++ .++.++||++++|++|++++.|++
T Consensus 154 l~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g~--tvlivsH~~-~~~~~~~d~v~~l~~G~i~~~g~~ 229 (287)
T PRK13641 154 VAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK-AGH--TVILVTHNM-DDVAEYADDVLVLEHGKLIKHASP 229 (287)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999974 455 999999996 578899999999999999999998
Q ss_pred hhHH
Q 044030 265 TAAN 268 (449)
Q Consensus 265 ~~~~ 268 (449)
+++.
T Consensus 230 ~~~~ 233 (287)
T PRK13641 230 KEIF 233 (287)
T ss_pred HHHh
Confidence 8654
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-46 Score=361.30 Aligned_cols=224 Identities=28% Similarity=0.421 Sum_probs=194.5
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCC-C-CCCceeEEEECCEecc----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLG-S-DTRQTGKILINGHKKA---- 111 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~-~-~~~~~G~I~~~g~~~~---- 111 (449)
|+++||+++| .. ..+...+++||||++++||++||+|.|||||||+.++|+|+++ + ....+|+|.++|+++-
T Consensus 2 L~v~nL~v~f-~~-~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~ 79 (316)
T COG0444 2 LEVKNLSVSF-PT-DAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSE 79 (316)
T ss_pred ceEeeeEEEE-ec-CCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCH
Confidence 6899999984 32 2245689999999999999999999999999999999999997 3 3346799999998631
Q ss_pred -----cccCcEEEEcCCC--CCCCCCCHHHHHHHHHhccCCCCC-CHHHHHHHHHHHHHHcCCch---hhCccCCCCChH
Q 044030 112 -----LAYGTSAYVTQDD--TLITTLTVKEAVYYSAQLQLPDTM-PKSDKKERAEVTIREMGLQD---AMNTRIRRLSGG 180 (449)
Q Consensus 112 -----~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~---~~~~~~~~LSgG 180 (449)
.+.+.|+||||++ .|.|.+||.+.+.-....+. .. .+++..+++.++|+.+||.+ ..+.++.+||||
T Consensus 80 ~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~--~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGG 157 (316)
T COG0444 80 KELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHG--KGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGG 157 (316)
T ss_pred HHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhh--cchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCc
Confidence 1235799999996 67899999999987766532 12 35667788999999999974 679999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 181 erqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
|||||.||.||+.+|++||.||||++||...+.+|+++|++++++.|. ++|++|||+ .-+.++||+|+||+.|++|+
T Consensus 158 MrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~--aiilITHDl-~vva~~aDri~VMYaG~iVE 234 (316)
T COG0444 158 MRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGT--ALILITHDL-GVVAEIADRVAVMYAGRIVE 234 (316)
T ss_pred HHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCC--EEEEEeCCH-HHHHHhcceEEEEECcEEEE
Confidence 999999999999999999999999999999999999999999987766 999999997 57999999999999999999
Q ss_pred ecChhhHH
Q 044030 261 FGPATAAN 268 (449)
Q Consensus 261 ~g~~~~~~ 268 (449)
.|+++++.
T Consensus 235 ~g~~~~i~ 242 (316)
T COG0444 235 EGPVEEIF 242 (316)
T ss_pred eCCHHHHh
Confidence 99998663
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-45 Score=358.27 Aligned_cols=219 Identities=24% Similarity=0.392 Sum_probs=187.9
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.++++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 5 ~l~~~~l~~~~------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~ 75 (255)
T PRK11300 5 LLSVSGLMMRF------GGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT---GGTILLRGQHIEGLPGH 75 (255)
T ss_pred eEEEeeEEEEE------CCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---cceEEECCEECCCCCHH
Confidence 58999999983 3467999999999999999999999999999999999998774 8999999987532
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCC----------CCC--CHHHHHHHHHHHHHHcCCchhhCccCCCCC
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLP----------DTM--PKSDKKERAEVTIREMGLQDAMNTRIRRLS 178 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~----------~~~--~~~~~~~~v~~~l~~lgL~~~~~~~~~~LS 178 (449)
....++|++|++.+++.+||.||+.++...... ... ...+..+.+.++++.+|+.+..++++++||
T Consensus 76 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS 155 (255)
T PRK11300 76 QIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLA 155 (255)
T ss_pred HHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCC
Confidence 123589999999999999999999986431100 000 112234567889999999999999999999
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeE
Q 044030 179 GGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQT 258 (449)
Q Consensus 179 gGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~i 258 (449)
||||||++||+||+.+|++|||||||+|||+.++..+.+.|++++++.|. |||++||++ .++.++||++++|++|++
T Consensus 156 ~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~--tii~~sH~~-~~~~~~~d~i~~l~~g~i 232 (255)
T PRK11300 156 YGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNV--TVLLIEHDM-KLVMGISDRIYVVNQGTP 232 (255)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCC--EEEEEeCCH-HHHHHhCCEEEEEECCeE
Confidence 99999999999999999999999999999999999999999999865455 999999996 578899999999999999
Q ss_pred EEecChhhH
Q 044030 259 VYFGPATAA 267 (449)
Q Consensus 259 v~~g~~~~~ 267 (449)
++.|+++++
T Consensus 233 ~~~~~~~~~ 241 (255)
T PRK11300 233 LANGTPEEI 241 (255)
T ss_pred EecCCHHHH
Confidence 999988765
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-45 Score=362.70 Aligned_cols=218 Identities=27% Similarity=0.433 Sum_probs=189.1
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.|+++||++.| . +++.+|+|+||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 5 ~l~~~~l~~~~-~----~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~---~G~i~i~g~~~~~~~~~ 76 (283)
T PRK13636 5 ILKVEELNYNY-S----DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDGKPIDYSRKG 76 (283)
T ss_pred eEEEEeEEEEe-C----CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ccEEEECCEECCCCcch
Confidence 68999999983 1 2357999999999999999999999999999999999998774 8999999987531
Q ss_pred ---ccCcEEEEcCCCC-CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHH
Q 044030 113 ---AYGTSAYVTQDDT-LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSIS 188 (449)
Q Consensus 113 ---~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia 188 (449)
..+.++|++|++. .+...||+||+.+..... ..+..+..++++++++.+||.+..+++++.||||||||++||
T Consensus 77 ~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~la 153 (283)
T PRK13636 77 LMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIA 153 (283)
T ss_pred HHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHH
Confidence 1246999999973 334579999998865432 234455556789999999999999999999999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 189 IEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 189 ~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
+||+.+|++|||||||+|||+.++..+.+.|++++++.|. |||++||++ +++..+||++++|++|++++.|+++++.
T Consensus 154 raL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~--tillvsH~~-~~~~~~~dri~~l~~G~i~~~g~~~~~~ 230 (283)
T PRK13636 154 GVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGL--TIIIATHDI-DIVPLYCDNVFVMKEGRVILQGNPKEVF 230 (283)
T ss_pred HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCC--EEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999999865555 999999996 5688899999999999999999988764
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-45 Score=352.15 Aligned_cols=208 Identities=25% Similarity=0.396 Sum_probs=180.9
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
|+++|+++.| . +++.+|+|+||++++||+++|+||||||||||+++|+|+++| .+|+|.++|.++..
T Consensus 2 l~~~~l~~~~-~----~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~i~~~~~~~ 73 (222)
T PRK10908 2 IRFEHVSKAY-L----GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERP---SAGKIWFSGHDITRLKNRE 73 (222)
T ss_pred EEEEeeEEEe-c----CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEcccCChhH
Confidence 7899999983 1 235799999999999999999999999999999999999877 48999999986531
Q ss_pred ---ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHH
Q 044030 113 ---AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISI 189 (449)
Q Consensus 113 ---~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~ 189 (449)
..+.++|++|++.+++.+|+.||+.+..... .....+..+.+.++++.+++.+..++.+..||||||||++||+
T Consensus 74 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lar 150 (222)
T PRK10908 74 VPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIAR 150 (222)
T ss_pred HHHHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHH
Confidence 1246999999999889999999998875432 2233444556788999999999899999999999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 190 EILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 190 aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
||+.+|++|||||||+|||+.++..+.+.|++++++ +. |||++||++ +++..+||++++|++|+++.
T Consensus 151 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~--tiii~sH~~-~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 151 AVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRV-GV--TVLMATHDI-GLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC-CC--EEEEEeCCH-HHHHHhCCEEEEEECCEEcc
Confidence 999999999999999999999999999999999754 54 999999996 57888999999999999853
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-45 Score=358.76 Aligned_cols=216 Identities=29% Similarity=0.485 Sum_probs=186.7
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
+|+++|+++.| +++.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 2 ~l~~~~l~~~~------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~---~G~i~~~g~~~~~~~~~ 72 (258)
T PRK13548 2 MLEARNLSVRL------GGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPA 72 (258)
T ss_pred eEEEEeEEEEe------CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcccCCHH
Confidence 47899999983 3457999999999999999999999999999999999998774 8999999986531
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEI 191 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL 191 (449)
..+.++|++|++.+++.+||+||+.+..... ....+...+.+.++++.+|+.+..++.+.+|||||||||+||+||
T Consensus 73 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al 149 (258)
T PRK13548 73 ELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVL 149 (258)
T ss_pred HhhhheEEEccCCcCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHH
Confidence 1246999999998888899999998864321 112233445678999999999999999999999999999999999
Q ss_pred H------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChh
Q 044030 192 L------TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPAT 265 (449)
Q Consensus 192 ~------~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~ 265 (449)
+ .+|++|+|||||+|||+.++..+.+.|++++++.|. |||++||++ .++..+||++++|++|++++.|+++
T Consensus 150 ~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~--tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~ 226 (258)
T PRK13548 150 AQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGL--AVIVVLHDL-NLAARYADRIVLLHQGRLVADGTPA 226 (258)
T ss_pred hcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC--EEEEEECCH-HHHHHhcCEEEEEECCEEEeeCCHH
Confidence 9 599999999999999999999999999999744455 999999996 5788899999999999999999887
Q ss_pred hH
Q 044030 266 AA 267 (449)
Q Consensus 266 ~~ 267 (449)
++
T Consensus 227 ~~ 228 (258)
T PRK13548 227 EV 228 (258)
T ss_pred HH
Confidence 65
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=360.12 Aligned_cols=222 Identities=27% Similarity=0.458 Sum_probs=189.1
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.|+++||++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|+...+|+|+++|.+...
T Consensus 4 ~l~~~nl~~~~------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~ 77 (262)
T PRK09984 4 IIRVEKLAKTF------NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRL 77 (262)
T ss_pred EEEEeeEEEEe------CCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEeccccccc
Confidence 58999999983 34679999999999999999999999999999999999998753347999999986521
Q ss_pred ------ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCC-----CCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHH
Q 044030 113 ------AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLP-----DTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQ 181 (449)
Q Consensus 113 ------~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~-----~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGe 181 (449)
..+.++|++|++.+++.+||.||+.+......+ ........++++.++++.+|+.+..++.+..|||||
T Consensus 78 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~ 157 (262)
T PRK09984 78 ARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQ 157 (262)
T ss_pred chhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHH
Confidence 124689999999999999999999876421100 001123345678899999999989999999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEe
Q 044030 182 KRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYF 261 (449)
Q Consensus 182 rqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~ 261 (449)
||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++.|. |||++||++ .++..+||++++|++|++++.
T Consensus 158 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~--tvii~tH~~-~~~~~~~d~i~~l~~g~i~~~ 234 (262)
T PRK09984 158 QQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGI--TVVVTLHQV-DYALRYCERIVALRQGHVFYD 234 (262)
T ss_pred HHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999865555 999999997 468899999999999999999
Q ss_pred cChhhH
Q 044030 262 GPATAA 267 (449)
Q Consensus 262 g~~~~~ 267 (449)
|++++.
T Consensus 235 g~~~~~ 240 (262)
T PRK09984 235 GSSQQF 240 (262)
T ss_pred CCHHHh
Confidence 988653
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-46 Score=351.36 Aligned_cols=200 Identities=31% Similarity=0.444 Sum_probs=172.7
Q ss_pred EEeeEEEEeecCcccc-cceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc--ccCc
Q 044030 40 WKDLTVTIVSNGKKGS-SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--AYGT 116 (449)
Q Consensus 40 ~~nls~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--~~~~ 116 (449)
++|+++.| ++ +.+|+|+||++++||+++|+|||||||||||++|+|+++|. +|+|.++|.+... ..+.
T Consensus 2 ~~~l~~~~------~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~ 72 (205)
T cd03226 2 IENISFSY------KKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPIKAKERRKS 72 (205)
T ss_pred cccEEEEe------CCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEhhhHHhhcc
Confidence 67888873 23 57999999999999999999999999999999999998774 8999999987532 2356
Q ss_pred EEEEcCCCC-CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCC
Q 044030 117 SAYVTQDDT-LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRP 195 (449)
Q Consensus 117 i~yv~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P 195 (449)
++|++|++. .+..+|+.||+.+..... . ...+++.++++.+||.+..++++.+||||||||++||+||+.+|
T Consensus 73 i~~~~q~~~~~~~~~tv~e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 145 (205)
T cd03226 73 IGYVMQDVDYQLFTDSVREELLLGLKEL---D----AGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGK 145 (205)
T ss_pred eEEEecChhhhhhhccHHHHHhhhhhhc---C----ccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCC
Confidence 999999974 344679999998765322 1 11246789999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEE
Q 044030 196 KLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTV 259 (449)
Q Consensus 196 ~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv 259 (449)
+++||||||+|||+.++..+.+.|++++++ |. |||++||++ +++..+||++++|++|+++
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~--tii~~sH~~-~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 146 DLLIFDEPTSGLDYKNMERVGELIRELAAQ-GK--AVIVITHDY-EFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHC-CC--EEEEEeCCH-HHHHHhCCEEEEEECCEEC
Confidence 999999999999999999999999999744 55 999999996 5788899999999999875
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-45 Score=357.59 Aligned_cols=216 Identities=28% Similarity=0.413 Sum_probs=187.5
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
|+++||++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 1 i~~~~l~~~~------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~ 71 (252)
T TIGR03005 1 VRFSDVTKRF------GILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPID---EGQIQVEGEQLYHMPGRN 71 (252)
T ss_pred CEEEEEEEEe------CCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccccccc
Confidence 4689999983 3457999999999999999999999999999999999998774 8999999986521
Q ss_pred -------------ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCCh
Q 044030 113 -------------AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSG 179 (449)
Q Consensus 113 -------------~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSg 179 (449)
..+.++|++|++.+++.+|+.||+.++..... ........+.+.++++.+|+.+..++.+..|||
T Consensus 72 ~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~ 149 (252)
T TIGR03005 72 GPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVL--GMARAEAEKRAMELLDMVGLADKADHMPAQLSG 149 (252)
T ss_pred ccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCChhHhhcChhhcCH
Confidence 13469999999999999999999988642211 123344456788999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEE
Q 044030 180 GQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTV 259 (449)
Q Consensus 180 GerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv 259 (449)
|||||++||+||+.+|+++||||||+|||+.++..+.+.|++++++.|. |||++||++ .++..+||++++|++|+++
T Consensus 150 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~--tiiivsH~~-~~~~~~~d~i~~l~~G~i~ 226 (252)
T TIGR03005 150 GQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDL--TMLLVTHEM-GFAREFADRVCFFDKGRIV 226 (252)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCc--EEEEEeCCH-HHHHHhcCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999865555 999999997 5788899999999999999
Q ss_pred EecChhhH
Q 044030 260 YFGPATAA 267 (449)
Q Consensus 260 ~~g~~~~~ 267 (449)
+.|+++++
T Consensus 227 ~~g~~~~~ 234 (252)
T TIGR03005 227 EQGKPDEI 234 (252)
T ss_pred EeCCHHHH
Confidence 99987655
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-45 Score=358.55 Aligned_cols=216 Identities=28% Similarity=0.386 Sum_probs=186.9
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.|+++||++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 5 ~l~~~~l~~~~------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~ 75 (257)
T PRK10619 5 KLNVIDLHKRY------GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGSIVVNGQTINLVRDK 75 (257)
T ss_pred cEEEeeeEEEE------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEccccccc
Confidence 48999999983 3467999999999999999999999999999999999998774 8999999986421
Q ss_pred --------------ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhh-CccCCCC
Q 044030 113 --------------AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAM-NTRIRRL 177 (449)
Q Consensus 113 --------------~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-~~~~~~L 177 (449)
..+.++|++|++.+++.+||+||+.++..... .....+.++++.++++.+|+.+.. ++++.+|
T Consensus 76 ~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~L 153 (257)
T PRK10619 76 DGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVKYLAKVGIDERAQGKYPVHL 153 (257)
T ss_pred ccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCChhhhhCCcccC
Confidence 12469999999999999999999987542111 123344566788999999998764 8899999
Q ss_pred ChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCe
Q 044030 178 SGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQ 257 (449)
Q Consensus 178 SgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~ 257 (449)
|||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++ .|. |||++||++ .++..+||++++|++|+
T Consensus 154 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~g~--tiiivsH~~-~~~~~~~d~i~~l~~G~ 229 (257)
T PRK10619 154 SGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE-EGK--TMVVVTHEM-GFARHVSSHVIFLHQGK 229 (257)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCC--EEEEEeCCH-HHHHHhcCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999975 455 999999996 57888999999999999
Q ss_pred EEEecChhhH
Q 044030 258 TVYFGPATAA 267 (449)
Q Consensus 258 iv~~g~~~~~ 267 (449)
+++.|++++.
T Consensus 230 i~~~~~~~~~ 239 (257)
T PRK10619 230 IEEEGAPEQL 239 (257)
T ss_pred EEEeCCHHHh
Confidence 9999988765
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=355.28 Aligned_cols=213 Identities=23% Similarity=0.419 Sum_probs=185.1
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
+++++|+++.| +.+.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 5 ~l~~~~l~~~~------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~ 75 (237)
T PRK11614 5 MLSFDKVSAHY------GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT---SGRIVFDGKDITDWQTA 75 (237)
T ss_pred EEEEEeEEEee------CCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEecCCCCHH
Confidence 58999999983 3457999999999999999999999999999999999998774 8999999987532
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHc-CCchhhCccCCCCChHHHHHHHHHH
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREM-GLQDAMNTRIRRLSGGQKRRVSISI 189 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~~~~LSgGerqRv~ia~ 189 (449)
..+.++|++|++.+++.+||.||+.++.... ......+.+.++++.+ ++.+..++++..||||||||++||+
T Consensus 76 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~ 150 (237)
T PRK11614 76 KIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGR 150 (237)
T ss_pred HHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHH
Confidence 1246999999999999999999998864321 1222344567778888 5888888999999999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 190 EILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 190 aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
||+.+|++++|||||+|||+.++..+.+.|++++++ |. |||++||++ .++.++||++++|++|++++.|+++++
T Consensus 151 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-~~--tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 224 (237)
T PRK11614 151 ALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQ-GM--TIFLVEQNA-NQALKLADRGYVLENGHVVLEDTGDAL 224 (237)
T ss_pred HHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHC-CC--EEEEEeCcH-HHHHhhCCEEEEEeCCEEEeeCCHHHH
Confidence 999999999999999999999999999999999754 55 999999996 578999999999999999999998766
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-45 Score=361.07 Aligned_cols=216 Identities=25% Similarity=0.363 Sum_probs=185.6
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
+|+++||++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 1 ml~~~~l~~~~------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~ 71 (271)
T PRK13638 1 MLATSDLWFRY------QDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRG 71 (271)
T ss_pred CeEEEEEEEEc------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ccEEEECCEEcccccCC
Confidence 37899999983 3457999999999999999999999999999999999999774 8999999987521
Q ss_pred ---ccCcEEEEcCCCCC-CCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHH
Q 044030 113 ---AYGTSAYVTQDDTL-ITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSIS 188 (449)
Q Consensus 113 ---~~~~i~yv~Q~~~l-~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia 188 (449)
.++.++|++|++.. +...|+.+|+.+..... +....+..+++.++++.+|+.+..++++..||||||||++||
T Consensus 72 ~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la 148 (271)
T PRK13638 72 LLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIA 148 (271)
T ss_pred HHHHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHH
Confidence 12469999999753 34568999998865432 223344456688899999999999999999999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 189 IEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 189 ~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
+||+.+|++|||||||+|||+.++..+.+.|+++++ .|. |||++||++ .++..+||++++|++|++++.|+++++.
T Consensus 149 raL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~--tii~vtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 149 GALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA-QGN--HVIISSHDI-DLIYEISDAVYVLRQGQILTHGAPGEVF 224 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999984 355 999999996 5788999999999999999999987653
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-46 Score=350.11 Aligned_cols=206 Identities=30% Similarity=0.446 Sum_probs=178.8
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
++++|+++.| +++.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 1 l~~~~l~~~~------~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 71 (213)
T cd03262 1 IEIKNLHKSF------GDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD---SGTIIIDGLKLTDDKKNI 71 (213)
T ss_pred CEEEEEEEEE------CCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccchhH
Confidence 4689999983 3457999999999999999999999999999999999998774 8999999987521
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHH
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIE 190 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~a 190 (449)
..+.++|++|++.+++.+|+.||+.++..... .....+..+++.++++.+|+.+..++++.+||||||||++||+|
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~a 149 (213)
T cd03262 72 NELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARA 149 (213)
T ss_pred HHHHhcceEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHH
Confidence 12569999999999999999999988643211 22334445678899999999999999999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeE
Q 044030 191 ILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQT 258 (449)
Q Consensus 191 L~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~i 258 (449)
|+.+|+++||||||+|||+.++..+.+.|+++++ .|. |||++||++ .++.++||++++|++|++
T Consensus 150 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~--tvi~~sh~~-~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 150 LAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGM--TMVVVTHEM-GFAREVADRVIFMDDGRI 213 (213)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-cCC--EEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999999999985 455 999999996 578899999999999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-45 Score=367.73 Aligned_cols=223 Identities=22% Similarity=0.300 Sum_probs=192.0
Q ss_pred eEEEEeeEEEEeecCc-----ccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecc
Q 044030 37 FLTWKDLTVTIVSNGK-----KGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKA 111 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~-----~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~ 111 (449)
.|+++||++.| .... .+...+|+||||+|++||++||+|+||||||||+++|+|+++| .+|+|.++|.++.
T Consensus 5 ~l~v~nl~~~~-~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p---~~G~i~~~g~~l~ 80 (327)
T PRK11308 5 LLQAIDLKKHY-PVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETP---TGGELYYQGQDLL 80 (327)
T ss_pred eEEEeeeEEEE-cCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCC---CCcEEEECCEEcC
Confidence 58999999984 2111 0135799999999999999999999999999999999999876 4899999998752
Q ss_pred c--------ccCcEEEEcCCC--CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccCCCCChH
Q 044030 112 L--------AYGTSAYVTQDD--TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSGG 180 (449)
Q Consensus 112 ~--------~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgG 180 (449)
. .++.++||+|++ .+.|.+|+.+++........ .....+.++++.++++.+||. ..+++++++||||
T Consensus 81 ~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgG 158 (327)
T PRK11308 81 KADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT--SLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGG 158 (327)
T ss_pred cCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHH
Confidence 1 135699999997 58899999999987654421 234455667889999999996 4789999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 181 erqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
|||||+||+||+.+|++||+||||+|||..++..++++|++++++.|. |||++|||+ ..+.++||+|++|++|++++
T Consensus 159 q~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~--til~iTHdl-~~~~~~adrv~vm~~G~ive 235 (327)
T PRK11308 159 QRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGL--SYVFISHDL-SVVEHIADEVMVMYLGRCVE 235 (327)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999876666 999999996 57888999999999999999
Q ss_pred ecChhhHH
Q 044030 261 FGPATAAN 268 (449)
Q Consensus 261 ~g~~~~~~ 268 (449)
.|+++++.
T Consensus 236 ~g~~~~~~ 243 (327)
T PRK11308 236 KGTKEQIF 243 (327)
T ss_pred ECCHHHHh
Confidence 99988764
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-45 Score=353.99 Aligned_cols=217 Identities=27% Similarity=0.409 Sum_probs=186.8
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.|+++|+++.| +++.+|+|+||++++||+++|+|||||||||||++|+|+++|. +|+|.++|.+...
T Consensus 2 ~i~~~~l~~~~------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~ 72 (242)
T TIGR03411 2 ILYLEGLSVSF------DGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEH 72 (242)
T ss_pred eEEEEeeEEEc------CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCeecCCCCHH
Confidence 47899999983 3457999999999999999999999999999999999998774 8999999986531
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCC--C---CCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHH
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLP--D---TMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRV 185 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~--~---~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv 185 (449)
..+.++|++|++.+++.+||.||+.+....... . ....+..+.++.++++.+|+.+..++.++.|||||||||
T Consensus 73 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv 152 (242)
T TIGR03411 73 QIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWL 152 (242)
T ss_pred HHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH
Confidence 124699999999999999999999886432100 0 011233456788999999999999999999999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChh
Q 044030 186 SISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPAT 265 (449)
Q Consensus 186 ~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~ 265 (449)
+||+||+.+|++|+|||||+|||+.++..+++.|+++++ +. |||++||++ +++.++||++++|++|+++..|+++
T Consensus 153 ~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~~--tii~~sH~~-~~~~~~~d~i~~l~~g~~~~~~~~~ 227 (242)
T TIGR03411 153 EIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG--KH--SVVVVEHDM-EFVRSIADKVTVLHQGSVLAEGSLD 227 (242)
T ss_pred HHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc--CC--EEEEEECCH-HHHHHhCCEEEEEECCeEEeeCCHH
Confidence 999999999999999999999999999999999999974 44 999999996 5788999999999999999999876
Q ss_pred hH
Q 044030 266 AA 267 (449)
Q Consensus 266 ~~ 267 (449)
++
T Consensus 228 ~~ 229 (242)
T TIGR03411 228 QV 229 (242)
T ss_pred HH
Confidence 54
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-45 Score=351.09 Aligned_cols=215 Identities=30% Similarity=0.445 Sum_probs=178.1
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
|+++||++.| . ++.....+|+|+||++++||+++|+|||||||||||++|+|+++|. +|+|.++|.+...
T Consensus 2 l~~~~v~~~~-~-~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 76 (228)
T cd03257 2 LEVKNLSVSF-P-TGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPT---SGSIIFDGKDLLKLSRRL 76 (228)
T ss_pred eEEEeeeEec-c-CCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccchhh
Confidence 6899999983 2 1101136999999999999999999999999999999999998774 8999999987531
Q ss_pred ---ccCcEEEEcCCC--CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHH-HHHHHHHcCCc-hhhCccCCCCChHHHHHH
Q 044030 113 ---AYGTSAYVTQDD--TLITTLTVKEAVYYSAQLQLPDTMPKSDKKER-AEVTIREMGLQ-DAMNTRIRRLSGGQKRRV 185 (449)
Q Consensus 113 ---~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~-v~~~l~~lgL~-~~~~~~~~~LSgGerqRv 185 (449)
.++.++|++|++ .+++.+||+||+.+....... .......+. +.++++.+++. +..++++.+|||||||||
T Consensus 77 ~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv 154 (228)
T cd03257 77 RKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGK--LSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRV 154 (228)
T ss_pred HHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHH
Confidence 124699999998 567789999999886543311 111122222 35889999995 688999999999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 186 SISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 186 ~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
+||+||+.+|++|||||||+|||+.++..+.+.|++++++.|. |||++||++ .++..+||++++|++|+++..|
T Consensus 155 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~--tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 155 AIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGL--TLLFITHDL-GVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCC--EEEEEeCCH-HHHHHhcCeEEEEeCCEEEecC
Confidence 9999999999999999999999999999999999999865455 999999997 4778899999999999998754
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-45 Score=360.39 Aligned_cols=221 Identities=26% Similarity=0.329 Sum_probs=185.3
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
|.|+++||++.| .......+.+|+|+||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 1 ~~l~~~~l~~~~-~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~ 76 (280)
T PRK13649 1 MGINLQNVSYTY-QAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPT---QGSVRVDDTLITSTSK 76 (280)
T ss_pred CeEEEEEEEEEc-CCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccccc
Confidence 358899999983 211001246999999999999999999999999999999999998774 8999999987531
Q ss_pred ------ccCcEEEEcCCC--CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccCCCCChHHHH
Q 044030 113 ------AYGTSAYVTQDD--TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSGGQKR 183 (449)
Q Consensus 113 ------~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGerq 183 (449)
.++.++|++|++ .+++ .||+||+.+..... ....++..++++++++.+||. ...++++.+|||||||
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~q 152 (280)
T PRK13649 77 NKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMR 152 (280)
T ss_pred ccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHH
Confidence 124699999996 4555 69999998865432 223344456688899999997 4689999999999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
|++||+||+.+|++|||||||+|||+.++..+.+.|+++++ .|. |||++||++ +++..+||++++|++|++++.|+
T Consensus 153 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~--tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g~ 228 (280)
T PRK13649 153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ-SGM--TIVLVTHLM-DDVANYADFVYVLEKGKLVLSGK 228 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCC--EEEEEeccH-HHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999975 355 999999996 57888999999999999999999
Q ss_pred hhhHH
Q 044030 264 ATAAN 268 (449)
Q Consensus 264 ~~~~~ 268 (449)
++++.
T Consensus 229 ~~~~~ 233 (280)
T PRK13649 229 PKDIF 233 (280)
T ss_pred HHHHh
Confidence 87653
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-45 Score=356.83 Aligned_cols=217 Identities=24% Similarity=0.369 Sum_probs=185.8
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeccc-
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDT--RQTGKILINGHKKAL- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~--~~~G~I~~~g~~~~~- 112 (449)
..|+++|+++.| +++.+|+|+||+|++||++||+||||||||||+++|+|+.+|.. +.+|+|.++|.+...
T Consensus 11 ~~l~~~~l~~~~------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~ 84 (258)
T PRK14268 11 PQIKVENLNLWY------GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEP 84 (258)
T ss_pred eeEEEeeeEEEe------CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccc
Confidence 468999999983 34579999999999999999999999999999999999986521 258999999987521
Q ss_pred ------ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCC----chhhCccCCCCChHHH
Q 044030 113 ------AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGL----QDAMNTRIRRLSGGQK 182 (449)
Q Consensus 113 ------~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL----~~~~~~~~~~LSgGer 182 (449)
..+.++|++|++.+++ +|++||+.+..... +.+.....+++.++++.+++ .+..++++..||||||
T Consensus 85 ~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~ 160 (258)
T PRK14268 85 DVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQ 160 (258)
T ss_pred cchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHH
Confidence 1246999999998888 89999999875432 22334445568889999998 3567899999999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 183 RRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 183 qRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
|||+||+||+.+|+++||||||+|||+.++..+.+.|++++ + +. |||++||++ .++.++||++++|++|++++.|
T Consensus 161 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~-~-~~--tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~ 235 (258)
T PRK14268 161 QRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLK-K-DY--TIVIVTHNM-QQAARISDYTGFFLMGELIEFG 235 (258)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-h-CC--EEEEEECCH-HHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999996 3 44 999999996 5788999999999999999999
Q ss_pred ChhhH
Q 044030 263 PATAA 267 (449)
Q Consensus 263 ~~~~~ 267 (449)
+++++
T Consensus 236 ~~~~~ 240 (258)
T PRK14268 236 QTRQI 240 (258)
T ss_pred CHHHH
Confidence 98765
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-45 Score=360.90 Aligned_cols=218 Identities=27% Similarity=0.423 Sum_probs=188.4
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.++++||++.| . +.+.+|+||||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~-~----~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~ 74 (277)
T PRK13652 3 LIETRDLCYSY-S----GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT---SGSVLIRGEPITKENIR 74 (277)
T ss_pred eEEEEEEEEEe-C----CCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHH
Confidence 47899999983 1 2346999999999999999999999999999999999998774 9999999987532
Q ss_pred -ccCcEEEEcCCCC-CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHH
Q 044030 113 -AYGTSAYVTQDDT-LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIE 190 (449)
Q Consensus 113 -~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~a 190 (449)
..+.++|++|++. .+...||.||+.+..... ........++++++++.+||.+..+++++.||||||||++||+|
T Consensus 75 ~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~lara 151 (277)
T PRK13652 75 EVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGV 151 (277)
T ss_pred HHHhheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHH
Confidence 1246999999974 344579999998765422 23344455678899999999999999999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 191 ILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 191 L~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
|+.+|++|||||||+|||+.++..+.+.|++++++.|. |||++||++ +++.+.||++++|++|++++.|+++++.
T Consensus 152 L~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~--tvli~tH~~-~~~~~~~drv~~l~~G~i~~~g~~~~~~ 226 (277)
T PRK13652 152 IAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGM--TVIFSTHQL-DLVPEMADYIYVMDKGRIVAYGTVEEIF 226 (277)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC--EEEEEecCH-HHHHHhCCEEEEEECCeEEEECCHHHHh
Confidence 99999999999999999999999999999999865555 999999996 5788999999999999999999998764
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=349.10 Aligned_cols=204 Identities=32% Similarity=0.509 Sum_probs=174.2
Q ss_pred EEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----cc
Q 044030 40 WKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-----AY 114 (449)
Q Consensus 40 ~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-----~~ 114 (449)
++|+++.| . + +.+.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+... ..
T Consensus 2 ~~~l~~~~-~-~--~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~ 74 (211)
T cd03225 2 LKNLSFSY-P-D--GARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKELR 74 (211)
T ss_pred ceeEEEec-C-C--CCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEcccCCHHHHH
Confidence 67888873 1 0 1257999999999999999999999999999999999998774 8999999986532 12
Q ss_pred CcEEEEcCCCC-CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh
Q 044030 115 GTSAYVTQDDT-LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT 193 (449)
Q Consensus 115 ~~i~yv~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~ 193 (449)
+.++|++|++. .++.+|+.||+.+..... ........+++.++++.+||.+..++++..|||||||||+||+||+.
T Consensus 75 ~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~ 151 (211)
T cd03225 75 RKVGLVFQNPDDQFFGPTVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAM 151 (211)
T ss_pred hhceEEecChhhhcCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence 46999999975 366789999998865432 12233445678899999999988999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCe
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQ 257 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~ 257 (449)
+|+++||||||+|||+.++..+.+.|++++++ |. |||++||++ .++..+||++++|++|+
T Consensus 152 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~--tvi~~sH~~-~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 152 DPDILLLDEPTAGLDPAGRRELLELLKKLKAE-GK--TIIIVTHDL-DLLLELADRVIVLEDGK 211 (211)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc-CC--EEEEEeCCH-HHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999999854 55 999999996 57888999999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-45 Score=350.77 Aligned_cols=221 Identities=41% Similarity=0.683 Sum_probs=184.4
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc--cc
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--AY 114 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--~~ 114 (449)
.+.++|+++.| . +..+.+.+|+|+||++++||+++|+||||||||||+++|+|++++..+.+|+|.++|.+... .+
T Consensus 3 ~~~~~~~~~~~-~-~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~ 80 (226)
T cd03234 3 VLPWWDVGLKA-K-NWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQ 80 (226)
T ss_pred cceeecceeee-e-cCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhc
Confidence 46799999983 2 11114689999999999999999999999999999999999987211258999999987532 23
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHH-HHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh
Q 044030 115 GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEV-TIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT 193 (449)
Q Consensus 115 ~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~-~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~ 193 (449)
+.++|++|++.+++.+||.||+.++.....+..........++.+ .++.+++.+..++.+++|||||+||++||+||+.
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 160 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLW 160 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHh
Confidence 579999999999999999999998765432211122222334555 8999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
+|+++||||||+|||+.++..+.+.|++++++ |. |||++||++..++.++||++++|++|++++.|
T Consensus 161 ~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~-~~--tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 161 DPKVLILDEPTSGLDSFTALNLVSTLSQLARR-NR--IVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CC--EEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999754 55 99999999745789999999999999998865
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-45 Score=373.80 Aligned_cols=207 Identities=25% Similarity=0.382 Sum_probs=184.7
Q ss_pred ccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe----cc-c--------ccCcEEE
Q 044030 53 KGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHK----KA-L--------AYGTSAY 119 (449)
Q Consensus 53 ~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~----~~-~--------~~~~i~y 119 (449)
++...+|+|+||+|++||+++|+||||||||||+++|+|+++|. +|+|+++|++ .. . +.+.++|
T Consensus 34 ~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~---~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~ 110 (382)
T TIGR03415 34 TGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVS---RGSVLVKDGDGSIDVANCDAATLRRLRTHRVSM 110 (382)
T ss_pred hCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEecccccccCCHHHHHHHhcCCEEE
Confidence 35678999999999999999999999999999999999999874 8999999962 21 0 1246999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEE
Q 044030 120 VTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLF 199 (449)
Q Consensus 120 v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~lll 199 (449)
|+|++.++|.+||.||+.|+.... +.+..+.++++.++++.+||.+..++++.+|||||||||+|||||+.+|++||
T Consensus 111 vfQ~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILL 187 (382)
T TIGR03415 111 VFQKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILL 187 (382)
T ss_pred EECCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999999999999999986543 23455566788999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 200 LDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 200 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
|||||+|||+.++..+.+.|.+++++.++ |||++|||+ +++.++||++++|++|+++..|+++++.
T Consensus 188 lDEPts~LD~~~r~~l~~~L~~l~~~~~~--TII~iTHdl-~e~~~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 188 MDEPFSALDPLIRTQLQDELLELQAKLNK--TIIFVSHDL-DEALKIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred EECCCccCCHHHHHHHHHHHHHHHHhcCC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999865566 999999996 5789999999999999999999998764
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-45 Score=357.40 Aligned_cols=219 Identities=25% Similarity=0.406 Sum_probs=187.0
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
++++++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++| .+|+|.++|.+...
T Consensus 1 ~~l~~~~l~~~~------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~ 71 (255)
T PRK11231 1 MTLRTENLTVGY------GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP---QSGTVFLGDKPISMLSS 71 (255)
T ss_pred CEEEEEeEEEEE------CCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC---CCcEEEECCEEhHHCCH
Confidence 358999999983 346799999999999999999999999999999999999877 48999999987421
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCC-CCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHH
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLP-DTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISI 189 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~ 189 (449)
..+.++|++|+..+++.+|+.||+.++...... .........+++.++++.+|+.+..++++..|||||||||+||+
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lar 151 (255)
T PRK11231 72 RQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAM 151 (255)
T ss_pred HHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHH
Confidence 124699999999988899999999875321100 01112234456888999999999999999999999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 190 EILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 190 aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
||+.+|+++||||||+|||+.++..+.+.|++++++ |. |||++||++ .++.++||++++|++|+++..|++++.
T Consensus 152 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~-~~--tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 225 (255)
T PRK11231 152 VLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQ-GK--TVVTVLHDL-NQASRYCDHLVVLANGHVMAQGTPEEV 225 (255)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHC-CC--EEEEEECCH-HHHHHhcCEEEEEECCeEEEEcCHHHh
Confidence 999999999999999999999999999999999753 55 999999997 578999999999999999999988765
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-45 Score=355.05 Aligned_cols=218 Identities=22% Similarity=0.309 Sum_probs=185.3
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeccc-
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDT--RQTGKILINGHKKAL- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~--~~~G~I~~~g~~~~~- 112 (449)
..++++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|.. +.+|+|+++|.+...
T Consensus 6 ~~l~~~~l~~~~------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 79 (254)
T PRK14273 6 AIIETENLNLFY------TDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSN 79 (254)
T ss_pred ceEEEeeeEEEe------CCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccc
Confidence 368999999983 34579999999999999999999999999999999999987621 248999999986421
Q ss_pred ------ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCC----chhhCccCCCCChHHH
Q 044030 113 ------AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGL----QDAMNTRIRRLSGGQK 182 (449)
Q Consensus 113 ------~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL----~~~~~~~~~~LSgGer 182 (449)
..+.++|++|++.+++ +||+||+.+...... .......++.+.++++.+++ .+..++++++||||||
T Consensus 80 ~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~ 156 (254)
T PRK14273 80 NFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQ 156 (254)
T ss_pred cccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHH
Confidence 1346999999988885 899999998754321 11233345678888999987 4567999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 183 RRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 183 qRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
|||+||+||+.+|++|||||||+|||+.++..+++.|++++ + +. |||++||++ +++..+||++++|++|+++..|
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~--tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 231 (254)
T PRK14273 157 QRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-E-SY--TIIIVTHNM-QQAGRISDRTAFFLNGCIEEES 231 (254)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-c-CC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999996 3 44 999999997 5788999999999999999999
Q ss_pred ChhhH
Q 044030 263 PATAA 267 (449)
Q Consensus 263 ~~~~~ 267 (449)
+++++
T Consensus 232 ~~~~~ 236 (254)
T PRK14273 232 STDEL 236 (254)
T ss_pred CHHHH
Confidence 98765
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-45 Score=361.27 Aligned_cols=218 Identities=26% Similarity=0.413 Sum_probs=188.7
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.|+++||++.| .. ..+.+|+|+||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|++...
T Consensus 5 ~l~~~~l~~~~-~~---~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~---~G~i~~~g~~i~~~~~~ 77 (279)
T PRK13635 5 IIRVEHISFRY-PD---AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGMVLSEETVW 77 (279)
T ss_pred eEEEEEEEEEe-CC---CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHH
Confidence 58999999983 21 2356999999999999999999999999999999999999874 8999999987532
Q ss_pred -ccCcEEEEcCCC-CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHH
Q 044030 113 -AYGTSAYVTQDD-TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIE 190 (449)
Q Consensus 113 -~~~~i~yv~Q~~-~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~a 190 (449)
..+.++|++|++ .+++.+||.||+.+..... ..+.++..+++.++++.+||.+..++++..|||||||||+||+|
T Consensus 78 ~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~lara 154 (279)
T PRK13635 78 DVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGV 154 (279)
T ss_pred HHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHH
Confidence 134699999997 3677789999998875432 23344556678999999999999999999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 191 ILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 191 L~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
|+.+|++|||||||+|||+.++..+++.|++++++.|. |||++||++. ++. .||++++|++|++++.|+++++.
T Consensus 155 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~--tilivsH~~~-~~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13635 155 LALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGI--TVLSITHDLD-EAA-QADRVIVMNKGEILEEGTPEEIF 228 (279)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCC--EEEEEecCHH-HHH-cCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999999999999865555 9999999974 565 59999999999999999987654
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-46 Score=350.38 Aligned_cols=209 Identities=31% Similarity=0.497 Sum_probs=175.1
Q ss_pred EEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEE
Q 044030 40 WKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAY 119 (449)
Q Consensus 40 ~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~y 119 (449)
++||++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+....++.++|
T Consensus 2 ~~~l~~~~------~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~i~~ 72 (213)
T cd03235 2 VEDLTVSY------GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLEKERKRIGY 72 (213)
T ss_pred cccceeEE------CCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCccHHHHHhheEE
Confidence 67888873 3357999999999999999999999999999999999998774 89999999865322356999
Q ss_pred EcCCCCCC--CCCCHHHHHHHHHhccCCC-CCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCC
Q 044030 120 VTQDDTLI--TTLTVKEAVYYSAQLQLPD-TMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPK 196 (449)
Q Consensus 120 v~Q~~~l~--~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~ 196 (449)
++|++.++ +.+||.||+.+........ ........+++.++++.+|+.+..++++.+||||||||++||+||+.+|+
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ 152 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPD 152 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 99998763 3479999998864321100 01123345678899999999998999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 197 LLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 197 llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
++||||||+|||+.++..+.+.|+++++ .|. |||++||++ +++.++||++++|++| +++.|
T Consensus 153 llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~--tvi~~sH~~-~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 153 LLLLDEPFAGVDPKTQEDIYELLRELRR-EGM--TILVVTHDL-GLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHh-cCC--EEEEEeCCH-HHHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999985 454 999999996 5788999999999876 55544
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-45 Score=354.66 Aligned_cols=219 Identities=26% Similarity=0.395 Sum_probs=186.3
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEecc---
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSD--TRQTGKILINGHKKA--- 111 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~--~~~~G~I~~~g~~~~--- 111 (449)
.|+++||++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|. .+.+|+|.++|++..
T Consensus 4 ~l~~~~l~~~~------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~ 77 (253)
T PRK14267 4 AIETVNLRVYY------GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPD 77 (253)
T ss_pred eEEEEeEEEEe------CCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccc
Confidence 58999999983 3457999999999999999999999999999999999998762 134899999998753
Q ss_pred c----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc----hhhCccCCCCChHHHH
Q 044030 112 L----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ----DAMNTRIRRLSGGQKR 183 (449)
Q Consensus 112 ~----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSgGerq 183 (449)
. .++.++|++|++.+++.+||.||+.++...+. ...+.+...+++.++++.+|+. +..++++.+|||||||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 156 (253)
T PRK14267 78 VDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNG-LVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQ 156 (253)
T ss_pred cChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcC-ccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHH
Confidence 1 12469999999999999999999988754321 0112334445678899999984 4578899999999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
|++||+||+.+|++++|||||+|||+.++..+.+.|+++++ +. |||++||++ .++..+||++++|++|++++.|+
T Consensus 157 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~--tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~ 231 (253)
T PRK14267 157 RLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK--EY--TIVLVTHSP-AQAARVSDYVAFLYLGKLIEVGP 231 (253)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh--CC--EEEEEECCH-HHHHhhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999963 34 999999996 57889999999999999999999
Q ss_pred hhhH
Q 044030 264 ATAA 267 (449)
Q Consensus 264 ~~~~ 267 (449)
++++
T Consensus 232 ~~~~ 235 (253)
T PRK14267 232 TRKV 235 (253)
T ss_pred HHHH
Confidence 8765
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-45 Score=351.77 Aligned_cols=212 Identities=28% Similarity=0.403 Sum_probs=183.2
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
|+++||++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 1 l~~~~l~~~~------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 71 (230)
T TIGR03410 1 LEVSNLNVYY------GQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPHE 71 (230)
T ss_pred CEEEeEEEEe------CCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHH
Confidence 4689999983 3457999999999999999999999999999999999999774 8999999987531
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcC-CchhhCccCCCCChHHHHHHHHHHH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMG-LQDAMNTRIRRLSGGQKRRVSISIE 190 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~~~~LSgGerqRv~ia~a 190 (449)
..+.++|++|++.+++.+|+.||+.++.... ... ..+.+.++++.++ +.+..++++.+||||||||++||+|
T Consensus 72 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~---~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~a 145 (230)
T TIGR03410 72 RARAGIAYVPQGREIFPRLTVEENLLTGLAAL---PRR---SRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARA 145 (230)
T ss_pred HHHhCeEEeccCCcccCCCcHHHHHHHHHHhc---Ccc---hHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHH
Confidence 1246999999999999999999998875432 111 1234567788886 6778899999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 191 ILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 191 L~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
|+.+|++++|||||+|||+.++..+.+.|++++++.|. |||++||++ +++..+||++++|++|+++..|+++++
T Consensus 146 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~--tii~~sH~~-~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 146 LVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGM--AILLVEQYL-DFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCc--EEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999999999999999854455 999999996 578889999999999999999988765
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-45 Score=360.50 Aligned_cols=215 Identities=26% Similarity=0.388 Sum_probs=185.8
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
++++||++.| . +.+.+|+||||+|++||+++|+||||||||||+++|+|+++|. +|+|+++|.+...
T Consensus 2 l~~~~l~~~~-~----~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 73 (274)
T PRK13644 2 IRLENVSYSY-P----DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ---KGKVLVSGIDTGDFSKLQ 73 (274)
T ss_pred EEEEEEEEEc-C----CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEECCccccHH
Confidence 7899999983 1 2356999999999999999999999999999999999998774 8999999987531
Q ss_pred -ccCcEEEEcCCCC-CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHH
Q 044030 113 -AYGTSAYVTQDDT-LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIE 190 (449)
Q Consensus 113 -~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~a 190 (449)
..+.++|++|++. .+...|+.||+.+..... ..+..+..+++.++++.+||.+..++++..|||||||||+||+|
T Consensus 74 ~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lara 150 (274)
T PRK13644 74 GIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGI 150 (274)
T ss_pred HHHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHH
Confidence 1246999999975 366689999998875432 23445555678899999999999999999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 191 ILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 191 L~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
|+.+|+++||||||+|||+.++..+++.|+++++ .|. |||++||++. ++ ..||++++|++|++++.|+++++.
T Consensus 151 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~--til~~tH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~ 223 (274)
T PRK13644 151 LTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE-KGK--TIVYITHNLE-EL-HDADRIIVMDRGKIVLEGEPENVL 223 (274)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCC--EEEEEecCHH-HH-hhCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999999999999999999974 455 9999999974 56 569999999999999999987653
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-45 Score=357.13 Aligned_cols=220 Identities=25% Similarity=0.364 Sum_probs=188.0
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
..|+++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 10 ~~l~i~~l~~~~------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~ 80 (265)
T PRK10575 10 TTFALRNVSFRV------PGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPLESWSS 80 (265)
T ss_pred ceEEEeeEEEEE------CCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEehhhCCH
Confidence 368999999983 3457999999999999999999999999999999999998774 8999999987521
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCC-CCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHH
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPD-TMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISI 189 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~ 189 (449)
..+.++|++|+..+++.+|+.||+.+........ ........++++++++.+++.+..++++++|||||||||+||+
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lar 160 (265)
T PRK10575 81 KAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAM 160 (265)
T ss_pred HHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHH
Confidence 1246999999988889999999998753211100 0111233456889999999999899999999999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 190 EILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 190 aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
||+.+|++|||||||+|||+.++..+.+.|++++++.|. |||++||++ .++.++||++++|++|+++..|+++++
T Consensus 161 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~--tiii~sH~~-~~i~~~~d~i~~l~~G~i~~~~~~~~~ 235 (265)
T PRK10575 161 LVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGL--TVIAVLHDI-NMAARYCDYLVALRGGEMIAQGTPAEL 235 (265)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCC--EEEEEeCCH-HHHHHhCCEEEEEECCeEEEecCHHHh
Confidence 999999999999999999999999999999999855555 999999996 578899999999999999999988665
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-45 Score=366.35 Aligned_cols=227 Identities=21% Similarity=0.294 Sum_probs=188.4
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCC-CCceeEEEECCEeccc---
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSD-TRQTGKILINGHKKAL--- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~-~~~~G~I~~~g~~~~~--- 112 (449)
.|+++||++.| .. +.+...+|+||||+|++||+++|+|+||||||||+++|+|++++. .+.+|+|.++|+++..
T Consensus 3 ~L~v~~l~~~y-~~-~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~ 80 (330)
T PRK15093 3 LLDIRNLTIEF-KT-SDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSP 80 (330)
T ss_pred eEEEeeeEEEE-eC-CCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCH
Confidence 58999999984 21 223457999999999999999999999999999999999998642 2358999999987521
Q ss_pred ------ccCcEEEEcCCCC--CCCCCCHHHHHHHHHhccCCCC---CCHHHHHHHHHHHHHHcCCch---hhCccCCCCC
Q 044030 113 ------AYGTSAYVTQDDT--LITTLTVKEAVYYSAQLQLPDT---MPKSDKKERAEVTIREMGLQD---AMNTRIRRLS 178 (449)
Q Consensus 113 ------~~~~i~yv~Q~~~--l~~~lTv~e~l~~~~~~~~~~~---~~~~~~~~~v~~~l~~lgL~~---~~~~~~~~LS 178 (449)
..+.++||+|++. +.|.+||.+++.+......... ....+.++++.++++.+||.+ .+++++.+||
T Consensus 81 ~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LS 160 (330)
T PRK15093 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELT 160 (330)
T ss_pred HHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCC
Confidence 1246999999975 6788999999976533211000 111334567889999999974 5689999999
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeE
Q 044030 179 GGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQT 258 (449)
Q Consensus 179 gGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~i 258 (449)
|||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++.|. |||++|||+ ..+.++||++++|++|++
T Consensus 161 gG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~--tii~itHdl-~~v~~~~dri~vm~~G~i 237 (330)
T PRK15093 161 EGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNT--TILLISHDL-QMLSQWADKINVLYCGQT 237 (330)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCC--EEEEEECCH-HHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999865566 999999996 578899999999999999
Q ss_pred EEecChhhHH
Q 044030 259 VYFGPATAAN 268 (449)
Q Consensus 259 v~~g~~~~~~ 268 (449)
++.|+++++.
T Consensus 238 ve~g~~~~i~ 247 (330)
T PRK15093 238 VETAPSKELV 247 (330)
T ss_pred EEECCHHHHH
Confidence 9999987653
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-45 Score=346.26 Aligned_cols=208 Identities=27% Similarity=0.440 Sum_probs=178.4
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---cc
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---AY 114 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---~~ 114 (449)
++++|+++.| +++. .|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+... ..
T Consensus 1 i~~~~l~~~~------~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~~~~~~~ 69 (211)
T cd03298 1 VRLDKIRFSY------GEQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ---SGRVLINGVDVTAAPPAD 69 (211)
T ss_pred CEEEeEEEEe------CCEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCcCCHhH
Confidence 4689999983 2222 3999999999999999999999999999999999774 8999999987532 23
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhC
Q 044030 115 GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTR 194 (449)
Q Consensus 115 ~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~ 194 (449)
+.++|++|++.+++.+|++||+.+...... .. .+..++++.++++.+|+.+..++++.+||||||||++||+||+.+
T Consensus 70 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~ 146 (211)
T cd03298 70 RPVSMLFQENNLFAHLTVEQNVGLGLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRD 146 (211)
T ss_pred ccEEEEecccccCCCCcHHHHHhccccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcC
Confidence 569999999999999999999987643211 11 123455688999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 195 PKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 195 P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
|+++||||||+|||+.++..+++.|++++++.|. |||++||++ .++.++||++++|++|+++..|
T Consensus 147 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~--tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 147 KPVLLLDEPFAALDPALRAEMLDLVLDLHAETKM--TVLMVTHQP-EDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCC--EEEEEecCH-HHHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999999999999999865555 999999996 5788999999999999998654
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-45 Score=347.79 Aligned_cols=212 Identities=27% Similarity=0.371 Sum_probs=181.0
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc---
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA--- 113 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~--- 113 (449)
.|+++||++.| .. ......+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+....
T Consensus 6 ~l~~~~l~~~~-~~-~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~ 80 (228)
T PRK10584 6 IVEVHHLKKSV-GQ-GEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMDEE 80 (228)
T ss_pred eEEEeeeEEEc-cC-CCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeeEEECCEEcccCCHH
Confidence 58999999983 21 000135999999999999999999999999999999999998774 89999999875311
Q ss_pred ------cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHH
Q 044030 114 ------YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSI 187 (449)
Q Consensus 114 ------~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i 187 (449)
.+.++|++|++.+++.+|+.||+.+....+ .....+.++++.++++.+++.+..++++..||||||||++|
T Consensus 81 ~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~l 157 (228)
T PRK10584 81 ARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVAL 157 (228)
T ss_pred HHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHH
Confidence 246999999999999999999998865432 12334455678899999999999999999999999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 188 SIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 188 a~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
|+||+.+|+++||||||+|||+.++..+.+.|++++++.|. |||++||++. .+ ..||++++|++|+++.
T Consensus 158 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~--tii~~sH~~~-~~-~~~d~i~~l~~g~i~~ 226 (228)
T PRK10584 158 ARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGT--TLILVTHDLQ-LA-ARCDRRLRLVNGQLQE 226 (228)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCC--EEEEEecCHH-HH-HhCCEEEEEECCEEEe
Confidence 99999999999999999999999999999999999765555 9999999974 55 5599999999999875
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-45 Score=356.75 Aligned_cols=222 Identities=25% Similarity=0.379 Sum_probs=189.2
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc--
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-- 112 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-- 112 (449)
..+|+++||++.| +++.+|+|+||++++||+++|+|||||||||||++|+|+++|. +|+|.++|++...
T Consensus 5 ~~~l~i~~l~~~~------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~ 75 (265)
T PRK10253 5 VARLRGEQLTLGY------GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPA---HGHVWLDGEHIQHYA 75 (265)
T ss_pred ccEEEEEEEEEEE------CCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEEhhhCC
Confidence 3478999999983 3457999999999999999999999999999999999998774 8999999987531
Q ss_pred ---ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCC-CCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHH
Q 044030 113 ---AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPD-TMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSIS 188 (449)
Q Consensus 113 ---~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia 188 (449)
..+.++|++|++.+++.+|+.||+.+......+. ....+...+++.++++.+||.+..++++..||||||||++||
T Consensus 76 ~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~la 155 (265)
T PRK10253 76 SKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIA 155 (265)
T ss_pred HHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHH
Confidence 1246999999999999999999998753111000 001123345688999999999999999999999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 189 IEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 189 ~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
+||+.+|+++||||||+|||+.++..+.+.|++++++.|. |||++||++ .++.++||++++|++|++++.|+++++.
T Consensus 156 ral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~--tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 156 MVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGY--TLAAVLHDL-NQACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999999854455 999999996 5789999999999999999999987653
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-45 Score=352.64 Aligned_cols=219 Identities=27% Similarity=0.411 Sum_probs=186.6
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeccc--
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSD--TRQTGKILINGHKKAL-- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~--~~~~G~I~~~g~~~~~-- 112 (449)
.++++||++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|. .+.+|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~ 76 (250)
T PRK14247 3 KIEIRDLKVSF------GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMD 76 (250)
T ss_pred eEEEEeeEEEE------CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCC
Confidence 48899999983 3457999999999999999999999999999999999998641 1358999999987531
Q ss_pred ---ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc----hhhCccCCCCChHHHHHH
Q 044030 113 ---AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ----DAMNTRIRRLSGGQKRRV 185 (449)
Q Consensus 113 ---~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSgGerqRv 185 (449)
..+.++|++|++.+++.+||.||+.++..... ......+..+.+.++++.+||. +..++.+.+|||||||||
T Consensus 77 ~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv 155 (250)
T PRK14247 77 VIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNR-LVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRL 155 (250)
T ss_pred HHHHhccEEEEeccCccCCCCcHHHHHHHHHHhcc-ccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHH
Confidence 13569999999988899999999998754321 0112344456788999999985 357899999999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChh
Q 044030 186 SISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPAT 265 (449)
Q Consensus 186 ~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~ 265 (449)
+||+||+.+|++++|||||+|||+.++..+.+.|++++ + +. |||++||++ .++.++||++++|++|+++..|+++
T Consensus 156 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~--tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~ 230 (250)
T PRK14247 156 CIARALAFQPEVLLADEPTANLDPENTAKIESLFLELK-K-DM--TIVLVTHFP-QQAARISDYVAFLYKGQIVEWGPTR 230 (250)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CC--EEEEEeCCH-HHHHHhcCEEEEEECCeEEEECCHH
Confidence 99999999999999999999999999999999999996 3 44 999999997 4788899999999999999999987
Q ss_pred hH
Q 044030 266 AA 267 (449)
Q Consensus 266 ~~ 267 (449)
++
T Consensus 231 ~~ 232 (250)
T PRK14247 231 EV 232 (250)
T ss_pred HH
Confidence 65
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-45 Score=358.16 Aligned_cols=220 Identities=23% Similarity=0.374 Sum_probs=188.0
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc--
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-- 112 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-- 112 (449)
..+++++|+++.| . .+++.+|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.+...
T Consensus 5 ~~~l~~~nl~~~~-~---~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~ 77 (271)
T PRK13632 5 SVMIKVENVSFSY-P---NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ---SGEIKIDGITISKEN 77 (271)
T ss_pred ceEEEEEeEEEEc-C---CCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEecCcCC
Confidence 3469999999983 1 12457999999999999999999999999999999999999774 8999999987532
Q ss_pred ---ccCcEEEEcCCCC-CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHH
Q 044030 113 ---AYGTSAYVTQDDT-LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSIS 188 (449)
Q Consensus 113 ---~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia 188 (449)
.++.++|++|++. .++.+||+||+.+..... .....+.+.++.++++.+||.+..++++..||||||||++||
T Consensus 78 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la 154 (271)
T PRK13632 78 LKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIA 154 (271)
T ss_pred HHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHH
Confidence 1346999999974 677789999998865432 223344556788999999999999999999999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 189 IEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 189 ~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
+||+.+|++|||||||+|||+.++..+++.|++++++.+. |||++||++. ++ ..||++++|++|+++..|+++++.
T Consensus 155 ral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~--tiii~sH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~ 230 (271)
T PRK13632 155 SVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKK--TLISITHDMD-EA-ILADKVIVFSEGKLIAQGKPKEIL 230 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCc--EEEEEEechh-HH-hhCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999999999999999854334 9999999974 55 479999999999999999887653
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-45 Score=356.70 Aligned_cols=216 Identities=29% Similarity=0.453 Sum_probs=186.0
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
|+++||++.| . +.+.+|+|+||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 2 l~~~~l~~~~-~----~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~ 73 (275)
T PRK13639 2 LETRDLKYSY-P----DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT---SGEVLIKGEPIKYDKKSL 73 (275)
T ss_pred EEEEEEEEEe-C----CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEECccccchH
Confidence 7899999983 1 2346999999999999999999999999999999999999774 8999999987531
Q ss_pred --ccCcEEEEcCCCC-CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHH
Q 044030 113 --AYGTSAYVTQDDT-LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISI 189 (449)
Q Consensus 113 --~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~ 189 (449)
..+.++|++|++. .+..+||.||+.+..... .....+..+++.++++.+||.+..++++++|||||+||++||+
T Consensus 74 ~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~lar 150 (275)
T PRK13639 74 LEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAG 150 (275)
T ss_pred HHHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHH
Confidence 1246999999963 333469999998764321 2234445567889999999999999999999999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 190 EILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 190 aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
||+.+|++++|||||+|||+.++..+++.|++++++ |. |||++||++ .++..+||++++|++|++++.|+++++.
T Consensus 151 al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~~--til~vtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (275)
T PRK13639 151 ILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKE-GI--TIIISTHDV-DLVPVYADKVYVMSDGKIIKEGTPKEVF 225 (275)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CC--EEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999854 55 999999996 5788899999999999999999988764
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-45 Score=356.08 Aligned_cols=222 Identities=25% Similarity=0.350 Sum_probs=187.4
Q ss_pred eEEEEeeEEEEeecC----cccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc
Q 044030 37 FLTWKDLTVTIVSNG----KKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~----~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~ 112 (449)
+|+++||++.| ... ..+++.+|+|+||++++||+++|+||||||||||+++|+|+++| .+|+|.++|.+...
T Consensus 2 ~l~~~~l~~~~-~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i~~ 77 (265)
T TIGR02769 2 LLEVRDVTHTY-RTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKP---AQGTVSFRGQDLYQ 77 (265)
T ss_pred eEEEEeEEEEe-ccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEEccc
Confidence 47899999983 210 01246799999999999999999999999999999999999877 48999999987531
Q ss_pred --------ccCcEEEEcCCC--CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccCCCCChHH
Q 044030 113 --------AYGTSAYVTQDD--TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSGGQ 181 (449)
Q Consensus 113 --------~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGe 181 (449)
..+.++|++|++ .+++.+||.||+.+...... .......++++.++++.+|+. ...++++.+|||||
T Consensus 78 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe 155 (265)
T TIGR02769 78 LDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLT--SLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQ 155 (265)
T ss_pred cCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHH
Confidence 124699999996 46778999999987643211 122334456788999999996 68899999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEe
Q 044030 182 KRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYF 261 (449)
Q Consensus 182 rqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~ 261 (449)
||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++.|. |||++||++ ..+..+||++++|++|++++.
T Consensus 156 ~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~--tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~ 232 (265)
T TIGR02769 156 LQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGT--AYLFITHDL-RLVQSFCQRVAVMDKGQIVEE 232 (265)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCc--EEEEEeCCH-HHHHHHhcEEEEEeCCEEEEE
Confidence 99999999999999999999999999999999999999999865555 999999996 578889999999999999999
Q ss_pred cChhhH
Q 044030 262 GPATAA 267 (449)
Q Consensus 262 g~~~~~ 267 (449)
|+++++
T Consensus 233 g~~~~~ 238 (265)
T TIGR02769 233 CDVAQL 238 (265)
T ss_pred CCHHHH
Confidence 998765
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-45 Score=351.61 Aligned_cols=218 Identities=28% Similarity=0.333 Sum_probs=182.7
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEeccc---
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRL--GSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~--~~~~~~~G~I~~~g~~~~~--- 112 (449)
|+++||++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|+. +| .+|+|.++|.+...
T Consensus 1 l~~~~l~~~~------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---~~G~i~~~g~~~~~~~~ 71 (243)
T TIGR01978 1 LKIKDLHVSV------EDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEV---TSGTILFKGQDLLELEP 71 (243)
T ss_pred CeEeeEEEEE------CCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CcceEEECCEecCCCCH
Confidence 4689999983 3457999999999999999999999999999999999985 34 58999999987531
Q ss_pred ---ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCC----CCCHHHHHHHHHHHHHHcCCc-hhhCccCC-CCChHHHH
Q 044030 113 ---AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPD----TMPKSDKKERAEVTIREMGLQ-DAMNTRIR-RLSGGQKR 183 (449)
Q Consensus 113 ---~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~----~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~-~LSgGerq 183 (449)
....++|++|++.+++.+|+.|++.+........ .....+..+++.++++.+||. ...++++. +|||||||
T Consensus 72 ~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~q 151 (243)
T TIGR01978 72 DERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKK 151 (243)
T ss_pred HHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHH
Confidence 1234899999999999999999998765432110 012233346788999999997 56788887 59999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhh-cCeEEEeeCCeEEEec
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQL-FHNLCLLSAGQTVYFG 262 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~-~D~v~~l~~G~iv~~g 262 (449)
||+||+||+.+|+++||||||+|||+.++..+.+.|+++++ .|. |||++||++ +.+... ||++++|++|++++.|
T Consensus 152 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~--tvi~vsH~~-~~~~~~~~d~i~~l~~G~i~~~g 227 (243)
T TIGR01978 152 RNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE-PDR--SFLIITHYQ-RLLNYIKPDYVHVLLDGRIVKSG 227 (243)
T ss_pred HHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCc--EEEEEEecH-HHHHhhcCCeEEEEeCCEEEEec
Confidence 99999999999999999999999999999999999999974 444 999999997 467777 8999999999999999
Q ss_pred ChhhHH
Q 044030 263 PATAAN 268 (449)
Q Consensus 263 ~~~~~~ 268 (449)
+++++.
T Consensus 228 ~~~~~~ 233 (243)
T TIGR01978 228 DVELAK 233 (243)
T ss_pred CHHHhc
Confidence 887543
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-45 Score=348.57 Aligned_cols=208 Identities=29% Similarity=0.477 Sum_probs=182.9
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc-cCc
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA-YGT 116 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~-~~~ 116 (449)
|+++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++| .+|+|.++|.+.... .+.
T Consensus 1 l~l~~v~~~~------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~~~~~~~~~~~~ 71 (223)
T TIGR03740 1 LETKNLSKRF------GKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRP---TSGEIIFDGHPWTRKDLHK 71 (223)
T ss_pred CEEEeEEEEE------CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEecccccccc
Confidence 4689999983 345799999999999999999999999999999999999877 489999999875322 246
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCC
Q 044030 117 SAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPK 196 (449)
Q Consensus 117 i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~ 196 (449)
++|++|++.+++.+|++||+.+..... ... +.++.++++.+|+++..++.+..||||||||++||+|++.+|+
T Consensus 72 ~~~~~q~~~~~~~~t~~~~~~~~~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~ 144 (223)
T TIGR03740 72 IGSLIESPPLYENLTARENLKVHTTLL---GLP----DSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPK 144 (223)
T ss_pred EEEEcCCCCccccCCHHHHHHHHHHHc---CCC----HHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999998875432 111 2457889999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChh
Q 044030 197 LLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPAT 265 (449)
Q Consensus 197 llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~ 265 (449)
+++|||||+|||+.++..+.+.|+++++ .|. |||++||++ .++.++||++++|++|+++..|++.
T Consensus 145 llllDEP~~~LD~~~~~~l~~~L~~~~~-~~~--tiii~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~ 209 (223)
T TIGR03740 145 LLILDEPTNGLDPIGIQELRELIRSFPE-QGI--TVILSSHIL-SEVQQLADHIGIISEGVLGYQGKIN 209 (223)
T ss_pred EEEECCCccCCCHHHHHHHHHHHHHHHH-CCC--EEEEEcCCH-HHHHHhcCEEEEEeCCEEEEecChh
Confidence 9999999999999999999999999974 455 999999997 5788999999999999999999864
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-44 Score=353.51 Aligned_cols=220 Identities=24% Similarity=0.381 Sum_probs=186.7
Q ss_pred CCeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEecc
Q 044030 34 DGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLG--SDTRQTGKILINGHKKA 111 (449)
Q Consensus 34 ~~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~--~~~~~~G~I~~~g~~~~ 111 (449)
+...++++|+++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|+++ |..+.+|+|.++|.+..
T Consensus 10 ~~~~l~~~~l~~~~------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~ 83 (260)
T PRK10744 10 APSKIQVRNLNFYY------GKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENIL 83 (260)
T ss_pred CCceEEEEEEEEEe------CCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcc
Confidence 44568999999983 34579999999999999999999999999999999999986 22235899999998752
Q ss_pred c-------ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc----hhhCccCCCCChH
Q 044030 112 L-------AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ----DAMNTRIRRLSGG 180 (449)
Q Consensus 112 ~-------~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSgG 180 (449)
. .++.++|++|++.+++ .|++||+.+...... ..+..+..+++.++++.+++. +..++.+.+||||
T Consensus 84 ~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G 160 (260)
T PRK10744 84 TPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGG 160 (260)
T ss_pred ccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHH
Confidence 1 1356999999998887 799999988754321 123344456788999999973 5678899999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 181 erqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
||||++||+||+.+|++|||||||+|||+.++..+.+.|++++ + +. |||++||++ .++..+||++++|++|+++.
T Consensus 161 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~-~~--tiii~sH~~-~~~~~~~d~i~~l~~G~i~~ 235 (260)
T PRK10744 161 QQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-Q-DY--TVVIVTHNM-QQAARCSDYTAFMYLGELIE 235 (260)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CC--eEEEEeCCH-HHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999996 3 44 999999996 57888999999999999999
Q ss_pred ecChhhH
Q 044030 261 FGPATAA 267 (449)
Q Consensus 261 ~g~~~~~ 267 (449)
.|+++++
T Consensus 236 ~g~~~~~ 242 (260)
T PRK10744 236 FGNTDTI 242 (260)
T ss_pred eCCHHHH
Confidence 9988765
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-45 Score=351.72 Aligned_cols=211 Identities=27% Similarity=0.416 Sum_probs=183.5
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.|+++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~ 73 (241)
T PRK14250 3 EIEFKEVSYSS------FGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDVI 73 (241)
T ss_pred eEEEEeEEEEe------CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcChH
Confidence 58899999983 3457999999999999999999999999999999999998774 8999999987531
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccCCCCChHHHHHHHHHHH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSGGQKRRVSISIE 190 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGerqRv~ia~a 190 (449)
.++.++|++|++.+++ .||+||+.+..... . ....++.++++.+|+. +..++.+..||||||||++||+|
T Consensus 74 ~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~a 145 (241)
T PRK14250 74 DLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G----EKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIART 145 (241)
T ss_pred HhhhcEEEEecCchhch-hhHHHHHhcchhhc---C----cHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHH
Confidence 1346999999998887 59999998754321 1 1234678899999996 67899999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 191 ILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 191 L~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
|+.+|+++||||||+|||+.++..+.+.|++++++.|. |||++||++ .++.++||++++|++|+++..|+++++
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~--tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (241)
T PRK14250 146 LANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNL--TVIWITHNM-EQAKRIGDYTAFLNKGILVEYAKTYDF 219 (241)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCC--EEEEEeccH-HHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 99999999999999999999999999999999864555 999999996 578889999999999999999988765
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-45 Score=352.11 Aligned_cols=217 Identities=26% Similarity=0.362 Sum_probs=183.3
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeccc--
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLG--SDTRQTGKILINGHKKAL-- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~--~~~~~~G~I~~~g~~~~~-- 112 (449)
.|+++||++.| +++.+|+|+||++++||+++|+|||||||||||++|+|+.. +..+.+|+|.++|++...
T Consensus 6 ~l~~~~l~~~~------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 79 (253)
T PRK14242 6 KMEARGLSFFY------GDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPH 79 (253)
T ss_pred EEEEeeeEEEE------CCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccc
Confidence 58999999983 34579999999999999999999999999999999999864 211358999999987531
Q ss_pred -----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc----hhhCccCCCCChHHHH
Q 044030 113 -----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ----DAMNTRIRRLSGGQKR 183 (449)
Q Consensus 113 -----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSgGerq 183 (449)
.++.++|++|++.+++ .||.||+.++..... ....+...+++.++++.+|+. +..++.+.+|||||||
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~q 156 (253)
T PRK14242 80 VDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNG--VKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQ 156 (253)
T ss_pred cCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHH
Confidence 1346999999998888 499999998754321 112233456788899999984 3568889999999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
||+||+||+.+|++|||||||+|||+.++..+.+.|++++ + +. |||++||++ .++.++||++++|++|+++..|+
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~--tvii~tH~~-~~~~~~~d~v~~l~~G~i~~~g~ 231 (253)
T PRK14242 157 RLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK-A-RY--TIIIVTHNM-QQAARVSDVTAFFYMGKLIEVGP 231 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CC--eEEEEEecH-HHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999995 4 44 999999997 57889999999999999999998
Q ss_pred hhhH
Q 044030 264 ATAA 267 (449)
Q Consensus 264 ~~~~ 267 (449)
++++
T Consensus 232 ~~~~ 235 (253)
T PRK14242 232 TEQI 235 (253)
T ss_pred HHHH
Confidence 8765
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-45 Score=348.63 Aligned_cols=214 Identities=25% Similarity=0.422 Sum_probs=184.1
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---cc
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---AY 114 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---~~ 114 (449)
++++||++.| +.+ ..|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|++... ..
T Consensus 2 l~~~~l~~~~------~~~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~ 70 (232)
T PRK10771 2 LKLTDITWLY------HHL--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTPPSR 70 (232)
T ss_pred eEEEEEEEEE------CCc--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCeecCcCChhh
Confidence 7899999983 222 23999999999999999999999999999999998774 8999999987532 13
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhC
Q 044030 115 GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTR 194 (449)
Q Consensus 115 ~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~ 194 (449)
+.++|++|++.+++.+|+.||+.+...... .. .+..++++.++++.+|+++..++++..||||||||++||+|++.+
T Consensus 71 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 147 (232)
T PRK10771 71 RPVSMLFQENNLFSHLTVAQNIGLGLNPGL--KL-NAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVRE 147 (232)
T ss_pred ccEEEEecccccccCCcHHHHHhccccccc--CC-CHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcC
Confidence 469999999999999999999987532110 11 223456788999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 195 PKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 195 P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
|+++||||||+|||+.++..+.+.|++++++.|. |||++||++ .++.++||++++|++|++++.|++++..
T Consensus 148 p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~--tiii~sH~~-~~~~~~~d~i~~l~~g~i~~~g~~~~~~ 218 (232)
T PRK10771 148 QPILLLDEPFSALDPALRQEMLTLVSQVCQERQL--TLLMVSHSL-EDAARIAPRSLVVADGRIAWDGPTDELL 218 (232)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC--EEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999765555 999999996 5788899999999999999999887653
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-44 Score=354.39 Aligned_cols=218 Identities=24% Similarity=0.345 Sum_probs=187.0
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.|+++|+++.| .. ..+.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 7 ~l~i~~l~~~~-~~---~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~ 79 (269)
T PRK13648 7 IIVFKNVSFQY-QS---DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK---SGEIFYNNQAITDDNFE 79 (269)
T ss_pred eEEEEEEEEEc-CC---CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHH
Confidence 68999999983 21 1246999999999999999999999999999999999998774 8999999987531
Q ss_pred -ccCcEEEEcCCCC-CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHH
Q 044030 113 -AYGTSAYVTQDDT-LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIE 190 (449)
Q Consensus 113 -~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~a 190 (449)
..+.++|++|++. +++..|+.+|+.+..... ....+...+++.++++.+|+.+..++++.+||||||||++||+|
T Consensus 80 ~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~lara 156 (269)
T PRK13648 80 KLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGV 156 (269)
T ss_pred HHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHH
Confidence 1346999999975 677789999998875432 22334445678899999999999999999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 191 ILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 191 L~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
|+.+|+++||||||+|||+.++..+++.|++++++.|. |||++||++. ++.. ||++++|++|++++.|+++++.
T Consensus 157 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~--tiiivtH~~~-~~~~-~d~i~~l~~G~i~~~g~~~~~~ 230 (269)
T PRK13648 157 LALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNI--TIISITHDLS-EAME-ADHVIVMNKGTVYKEGTPTEIF 230 (269)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC--EEEEEecCch-HHhc-CCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999999999999754455 9999999974 5664 9999999999999999987653
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-45 Score=357.91 Aligned_cols=221 Identities=26% Similarity=0.415 Sum_probs=187.4
Q ss_pred eEEEEeeEEEEeecCc-ccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 37 FLTWKDLTVTIVSNGK-KGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~-~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
+|+++|+++.| .... .+.+.+|+|+||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~-~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~ 79 (280)
T PRK13633 4 MIKCKNVSYKY-ESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS---EGKVYVDGLDTSDEEN 79 (280)
T ss_pred eEEEeeeEEEc-CCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEecccccc
Confidence 58999999993 2110 01357999999999999999999999999999999999999774 8999999987531
Q ss_pred ---ccCcEEEEcCCCC-CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHH
Q 044030 113 ---AYGTSAYVTQDDT-LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSIS 188 (449)
Q Consensus 113 ---~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia 188 (449)
..+.++|++|++. .+...||.+++.|+.... ..+..+.+++++++++.+||.+..++++..||||||||++||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~la 156 (280)
T PRK13633 80 LWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIA 156 (280)
T ss_pred HHHHhhheEEEecChhhhhccccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHH
Confidence 1356999999974 233469999998875432 233455566789999999999999999999999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 189 IEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 189 ~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
+||+.+|+++||||||+|||+.++..+.+.|++++++.|. |||++||++. ++.. ||++++|++|+++..|+++++.
T Consensus 157 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~--tillvtH~~~-~~~~-~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 157 GILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGI--TIILITHYME-EAVE-ADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC--EEEEEecChH-HHhc-CCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999999999999999865555 9999999974 5654 9999999999999999988764
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-44 Score=347.03 Aligned_cols=215 Identities=28% Similarity=0.455 Sum_probs=188.6
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---cc
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---AY 114 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---~~ 114 (449)
|+++|+++.| +.+.+++|+||++++|++++|+||||||||||+++|+|.++|. +|+|.++|++... ..
T Consensus 1 l~~~~l~~~~------~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~~~~ 71 (232)
T cd03300 1 IELENVSKFY------GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPHK 71 (232)
T ss_pred CEEEeEEEEe------CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhh
Confidence 4689999983 3457999999999999999999999999999999999999874 8999999987532 23
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhC
Q 044030 115 GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTR 194 (449)
Q Consensus 115 ~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~ 194 (449)
+.++|++|++.+++.+|+.||+.+..... ........+.+.++++.+|+.+..++.+..||||||||++||+||+.+
T Consensus 72 ~~i~~~~q~~~~~~~~t~~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~ 148 (232)
T cd03300 72 RPVNTVFQNYALFPHLTVFENIAFGLRLK---KLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNE 148 (232)
T ss_pred cceEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 57999999999999999999998876543 122334456788899999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 195 PKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 195 P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
|+++||||||+|||+.++..+.+.|++++++.|. |||++||++ .++.++||++++|++|++++.|+.++.
T Consensus 149 p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~--tiii~sh~~-~~~~~~~d~i~~l~~G~~~~~~~~~~~ 218 (232)
T cd03300 149 PKVLLLDEPLGALDLKLRKDMQLELKRLQKELGI--TFVFVTHDQ-EEALTMSDRIAVMNKGKIQQIGTPEEI 218 (232)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCC--EEEEEeCCH-HHHHHhcCEEEEEECCEEEecCCHHHH
Confidence 9999999999999999999999999999865555 999999996 578899999999999999999987655
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-45 Score=358.20 Aligned_cols=221 Identities=25% Similarity=0.389 Sum_probs=188.8
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.|+++|+++.| . + ..+.+|+|+||+|++||+++|+||||||||||+++|+|+++|....+|+|.++|.+...
T Consensus 5 ~l~i~~l~~~~-~-~--~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~ 80 (282)
T PRK13640 5 IVEFKHVSFTY-P-D--SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVW 80 (282)
T ss_pred eEEEEEEEEEc-C-C--CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHH
Confidence 68999999983 2 1 13469999999999999999999999999999999999997741123999999987532
Q ss_pred -ccCcEEEEcCCCC-CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHH
Q 044030 113 -AYGTSAYVTQDDT-LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIE 190 (449)
Q Consensus 113 -~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~a 190 (449)
..+.++|++|++. .++..||+||+.|..... ..+.++..+++.++++.+||.+..+++++.||||||||++||+|
T Consensus 81 ~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~lara 157 (282)
T PRK13640 81 DIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGI 157 (282)
T ss_pred HHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHH
Confidence 1246999999974 677789999998865432 23445556778999999999999999999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 191 ILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 191 L~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
|+.+|++|||||||+|||+.++..+.+.|++++++.|. |||++||++. .+ ..||++++|++|++++.|+++++.
T Consensus 158 l~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~--tvli~tH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 158 LAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNL--TVISITHDID-EA-NMADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCC--EEEEEecCHH-HH-HhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999865555 9999999974 55 579999999999999999987764
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=348.31 Aligned_cols=216 Identities=27% Similarity=0.450 Sum_probs=188.8
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---cc
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---AY 114 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---~~ 114 (449)
++++|+++.| +.+.+|+|+||++.+||+++|+||||||||||+++|+|+++| .+|+|.++|.+... ..
T Consensus 1 i~i~~l~~~~------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~i~i~g~~~~~~~~~~ 71 (237)
T TIGR00968 1 IEIANISKRF------GSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQP---DSGRIRLNGQDATRVHARD 71 (237)
T ss_pred CEEEEEEEEE------CCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEEcCcCChhh
Confidence 4689999983 345799999999999999999999999999999999999876 48999999987532 23
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhC
Q 044030 115 GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTR 194 (449)
Q Consensus 115 ~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~ 194 (449)
+.++|++|++.+++.+|+.||+.+....+ ........+.++++++.+++.+..++.++.|||||+||++||++|+.+
T Consensus 72 ~~i~~~~q~~~~~~~~t~~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~ 148 (237)
T TIGR00968 72 RKIGFVFQHYALFKHLTVRDNIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVE 148 (237)
T ss_pred cCEEEEecChhhccCCcHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 56999999999999999999998876533 122333446678999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 195 PKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 195 P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
|++++|||||+|||+.++..+.+.|++++++.++ |||++||++ .++.++||++++|++|++++.|+.+++.
T Consensus 149 p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~--tvli~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 219 (237)
T TIGR00968 149 PQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHV--TTVFVTHDQ-EEAMEVADRIVVMSNGKIEQIGSPDEVY 219 (237)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCC--EEEEEeCCH-HHHHhhcCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999999999999854455 999999996 5788999999999999999999987653
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=349.63 Aligned_cols=218 Identities=23% Similarity=0.347 Sum_probs=184.3
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.++++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|++++..+.+|+|.++|++...
T Consensus 2 ~~~~~~l~~~~------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~ 75 (246)
T PRK14269 2 IAKTTNLNLFY------GKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVV 75 (246)
T ss_pred ceeeeeeEEEE------CCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHH
Confidence 57899999983 34579999999999999999999999999999999999975322458999999987532
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc----hhhCccCCCCChHHHHHHHH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ----DAMNTRIRRLSGGQKRRVSI 187 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSgGerqRv~i 187 (449)
..+.++|++|++.+++ .|++||+.++...+. ........++++.++++.+++. +..++.+.+|||||||||+|
T Consensus 76 ~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l 153 (246)
T PRK14269 76 ALRKNVGMVFQQPNVFV-KSIYENISYAPKLHG-MIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCI 153 (246)
T ss_pred HHhhhEEEEecCCcccc-ccHHHHhhhHHhhcC-cccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHH
Confidence 1346999999998887 699999988754321 0001233445678899999994 45688899999999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 188 SIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 188 a~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
|+||+.+|++++|||||+|||+.++..+.+.|++++ + +. |||++||++ +++.++||++++|++|++++.|++++.
T Consensus 154 aral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~--tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 228 (246)
T PRK14269 154 ARALAIKPKLLLLDEPTSALDPISSGVIEELLKELS-H-NL--SMIMVTHNM-QQGKRVADYTAFFHLGELIEFGESKEF 228 (246)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-C-CC--EEEEEecCH-HHHHhhCcEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999986 3 45 999999996 578899999999999999999988765
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=358.72 Aligned_cols=220 Identities=21% Similarity=0.283 Sum_probs=184.6
Q ss_pred eEEEEeeEEEEeecCcc-cccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 37 FLTWKDLTVTIVSNGKK-GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~-~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
.|+++||++.| . ++. ....+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 6 ~l~i~nl~~~~-~-~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~ 80 (289)
T PRK13645 6 DIILDNVSYTY-A-KKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE---TGQTIVGDYAIPANLK 80 (289)
T ss_pred eEEEEEEEEEe-C-CCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEcccccc
Confidence 48999999983 2 110 0135999999999999999999999999999999999999774 8999999986420
Q ss_pred -------ccCcEEEEcCCCC--CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccCCCCChHHH
Q 044030 113 -------AYGTSAYVTQDDT--LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSGGQK 182 (449)
Q Consensus 113 -------~~~~i~yv~Q~~~--l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGer 182 (449)
.++.++|++|++. +++ .|++||+.|..... .....+..+++.++++.++|. +..++++..||||||
T Consensus 81 ~~~~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~ 156 (289)
T PRK13645 81 KIKEVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQK 156 (289)
T ss_pred ccccHHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHH
Confidence 1246999999973 344 59999998865422 223344456678899999994 788999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 183 RRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 183 qRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
||++||+||+.+|++|||||||+|||+.++..+++.|++++++.|. |||++||++ +++.++||++++|++|++++.|
T Consensus 157 qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~--tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~g 233 (289)
T PRK13645 157 RRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKK--RIIMVTHNM-DQVLRIADEVIVMHEGKVISIG 233 (289)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC--EEEEEecCH-HHHHHhCCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999999999999865555 999999996 5788999999999999999999
Q ss_pred ChhhHH
Q 044030 263 PATAAN 268 (449)
Q Consensus 263 ~~~~~~ 268 (449)
+++++.
T Consensus 234 ~~~~~~ 239 (289)
T PRK13645 234 SPFEIF 239 (289)
T ss_pred CHHHHh
Confidence 987653
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=354.72 Aligned_cols=222 Identities=23% Similarity=0.379 Sum_probs=187.8
Q ss_pred eEEEEeeEEEEeecCc----ccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc
Q 044030 37 FLTWKDLTVTIVSNGK----KGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~----~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~ 112 (449)
+|+++||+++| .... .+.+.+|+|+||++++||+++|+|||||||||||++|+|+++|. +|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~-~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~ 79 (267)
T PRK15112 4 LLEVRNLSKTF-RYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGELLIDDHPLHF 79 (267)
T ss_pred eEEEeceEEEe-cCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCC
Confidence 58999999983 2100 12357999999999999999999999999999999999999774 8999999987532
Q ss_pred -----ccCcEEEEcCCCC--CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccCCCCChHHHHH
Q 044030 113 -----AYGTSAYVTQDDT--LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSGGQKRR 184 (449)
Q Consensus 113 -----~~~~i~yv~Q~~~--l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGerqR 184 (449)
..+.++|++|++. +++.+|+.+++.+...... .....+..+.+.++++.+|+. +..++++.+||||||||
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qr 157 (267)
T PRK15112 80 GDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQR 157 (267)
T ss_pred CchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHH
Confidence 1246999999975 6788899999988654421 123334456788999999994 67889999999999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecCh
Q 044030 185 VSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264 (449)
Q Consensus 185 v~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~ 264 (449)
|+||+||+.+|++|||||||+|||+.++..+.+.|++++++.|. |||++||++ +++..+||++++|++|+++..|++
T Consensus 158 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~--tviivsH~~-~~~~~~~d~i~~l~~G~i~~~~~~ 234 (267)
T PRK15112 158 LGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGI--SYIYVTQHL-GMMKHISDQVLVMHQGEVVERGST 234 (267)
T ss_pred HHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCc--EEEEEeCCH-HHHHHhcCEEEEEECCEEEecCCH
Confidence 99999999999999999999999999999999999999865555 999999997 578889999999999999999987
Q ss_pred hhH
Q 044030 265 TAA 267 (449)
Q Consensus 265 ~~~ 267 (449)
+++
T Consensus 235 ~~~ 237 (267)
T PRK15112 235 ADV 237 (267)
T ss_pred HHH
Confidence 765
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-44 Score=351.57 Aligned_cols=218 Identities=27% Similarity=0.374 Sum_probs=185.8
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeccc--
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDT--RQTGKILINGHKKAL-- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~--~~~G~I~~~g~~~~~-- 112 (449)
.++++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+.+|.. +.+|+|.++|.+...
T Consensus 4 ~l~i~~v~~~~------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~ 77 (258)
T PRK14241 4 RIDVKDLNIYY------GSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPG 77 (258)
T ss_pred cEEEeeEEEEE------CCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccc
Confidence 58999999983 34579999999999999999999999999999999999986421 258999999987521
Q ss_pred -----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc----hhhCccCCCCChHHHH
Q 044030 113 -----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ----DAMNTRIRRLSGGQKR 183 (449)
Q Consensus 113 -----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSgGerq 183 (449)
..+.++|++|++.+++.+||.||+.++...+. .......++++.++++.+|+. +..++.+.+|||||||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 155 (258)
T PRK14241 78 VDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQ 155 (258)
T ss_pred cChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHH
Confidence 12469999999999999999999988764321 112344456788899999984 5678999999999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEee------CCe
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLS------AGQ 257 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~------~G~ 257 (449)
||+||+||+.+|+++||||||+|||+.++..+.+.|++++ + +. |||++||++ .++.++||++++|+ +|+
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~--tviivsH~~-~~~~~~~d~i~~l~~~~~~~~g~ 230 (258)
T PRK14241 156 RLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELK-Q-DY--TIVIVTHNM-QQAARVSDQTAFFNLEATGKPGR 230 (258)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CC--EEEEEecCH-HHHHHhCCEEEEEecccCCCCce
Confidence 9999999999999999999999999999999999999996 3 34 999999996 57889999999997 799
Q ss_pred EEEecChhhH
Q 044030 258 TVYFGPATAA 267 (449)
Q Consensus 258 iv~~g~~~~~ 267 (449)
+++.|+++++
T Consensus 231 i~~~~~~~~~ 240 (258)
T PRK14241 231 LVEIDDTEKI 240 (258)
T ss_pred EEecCCHHHH
Confidence 9999998765
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-44 Score=352.65 Aligned_cols=217 Identities=28% Similarity=0.432 Sum_probs=185.3
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
|+++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 2 l~~~~l~~~~------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~ 72 (256)
T TIGR03873 2 LRLSRVSWSA------GGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRRA 72 (256)
T ss_pred ceEEeEEEEE------CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEEcccCCHHH
Confidence 6789999983 3457999999999999999999999999999999999998774 8999999987532
Q ss_pred ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCC-CCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHH
Q 044030 113 AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLP-DTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEI 191 (449)
Q Consensus 113 ~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL 191 (449)
..+.++|++|++.+++.+||.||+.++...... ......+..+++.++++.+++.+..++++..||||||||++||+||
T Consensus 73 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al 152 (256)
T TIGR03873 73 RARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARAL 152 (256)
T ss_pred HhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHH
Confidence 124699999998888889999999875321000 0111223345688999999999999999999999999999999999
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 192 LTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 192 ~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
+.+|++++|||||+|||+.++..+.+.|+++++ .|. |||++||++ ..+.++||++++|++|+++..|++++.
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~--tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 224 (256)
T TIGR03873 153 AQEPKLLLLDEPTNHLDVRAQLETLALVRELAA-TGV--TVVAALHDL-NLAASYCDHVVVLDGGRVVAAGPPREV 224 (256)
T ss_pred hcCCCEEEEcCccccCCHHHHHHHHHHHHHHHh-cCC--EEEEEeCCH-HHHHHhCCEEEEEeCCCEEEecCHHHh
Confidence 999999999999999999999999999999974 455 999999997 578899999999999999999988764
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-44 Score=367.99 Aligned_cols=207 Identities=27% Similarity=0.438 Sum_probs=182.4
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
|++ ||+++| +++. + |+||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|++...
T Consensus 2 l~~-~l~k~~------~~~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~~~~~~~~~ 69 (352)
T PRK11144 2 LEL-NFKQQL------GDLC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQ---KGRIVLNGRVLFDAEKGI 69 (352)
T ss_pred eEE-EEEEEe------CCEE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccccccc
Confidence 566 888873 2333 3 899999999999999999999999999999999774 8999999986421
Q ss_pred ----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHH
Q 044030 113 ----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSIS 188 (449)
Q Consensus 113 ----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia 188 (449)
..+.++|++|+..+++.+||+||+.|+.. ....++++++++.+||.+..++++.+|||||||||+||
T Consensus 70 ~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvala 140 (352)
T PRK11144 70 CLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIG 140 (352)
T ss_pred ccchhhCCEEEEcCCcccCCCCcHHHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHH
Confidence 13579999999999999999999988642 11235688999999999999999999999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 189 IEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 189 ~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
|||+.+|++|||||||+|||+.++..+.+.|++++++.|. |||++||++ .++..+||++++|++|+++..|+++++.
T Consensus 141 raL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~--tii~vTHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~i~ 217 (352)
T PRK11144 141 RALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINI--PILYVSHSL-DEILRLADRVVVLEQGKVKAFGPLEEVW 217 (352)
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCC--eEEEEecCH-HHHHHhCCEEEEEeCCEEEEecCHHHHH
Confidence 9999999999999999999999999999999999866555 999999996 5789999999999999999999998764
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-44 Score=348.94 Aligned_cols=218 Identities=24% Similarity=0.375 Sum_probs=185.2
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeccc--
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLG--SDTRQTGKILINGHKKAL-- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~--~~~~~~G~I~~~g~~~~~-- 112 (449)
.|+++|+++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|+++ |..+.+|+|.++|.++..
T Consensus 4 ~l~~~nl~~~~------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~ 77 (252)
T PRK14256 4 KVKLEQLNVHF------GKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRG 77 (252)
T ss_pred EEEEEEEEEEe------CCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEccccc
Confidence 47999999983 34579999999999999999999999999999999999985 322358999999987531
Q ss_pred -----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc----hhhCccCCCCChHHHH
Q 044030 113 -----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ----DAMNTRIRRLSGGQKR 183 (449)
Q Consensus 113 -----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSgGerq 183 (449)
.++.++|++|++.+++.+|+.||+.+...... .....+.++++.++++.+++. +..++.+..|||||||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 155 (252)
T PRK14256 78 VDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNG--RVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQ 155 (252)
T ss_pred CChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHH
Confidence 13569999999999999999999987654321 112334456688899999985 3567889999999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
|++||+||+.+|++|||||||+|||+.++..+.+.|+++++ +. |||++||++ +++.++||++++|++|+++..|+
T Consensus 156 rl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~--tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~~ 230 (252)
T PRK14256 156 RLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE--KY--TIIIVTHNM-QQAARVSDYTAFFYMGDLVECGE 230 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CC--cEEEEECCH-HHHHhhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999973 34 999999996 57889999999999999999998
Q ss_pred hhhH
Q 044030 264 ATAA 267 (449)
Q Consensus 264 ~~~~ 267 (449)
+++.
T Consensus 231 ~~~~ 234 (252)
T PRK14256 231 TKKI 234 (252)
T ss_pred HHHH
Confidence 8765
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-44 Score=346.35 Aligned_cols=214 Identities=27% Similarity=0.473 Sum_probs=187.1
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---cc
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---AY 114 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---~~ 114 (449)
|+++|+++.| +. ++|+|+||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|.+... ..
T Consensus 1 l~~~~l~~~~------~~-~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~---~G~v~i~g~~~~~~~~~~ 70 (235)
T cd03299 1 LKVENLSKDW------KE-FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEK 70 (235)
T ss_pred CeeEeEEEEe------CC-ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcCcCChhH
Confidence 4688999883 22 3899999999999999999999999999999999998774 8999999987532 23
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhC
Q 044030 115 GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTR 194 (449)
Q Consensus 115 ~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~ 194 (449)
+.++|++|++.+++.+|+.||+.+..... .....+..+.+.++++.+||.+..+++++.||||||||++||+||+.+
T Consensus 71 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~ 147 (235)
T cd03299 71 RDISYVPQNYALFPHMTVYKNIAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVN 147 (235)
T ss_pred cCEEEEeecCccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcC
Confidence 57999999999999999999998875332 223344556678899999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 195 PKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 195 P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
|++++|||||+|||+.++..+.+.|++++++.|. |||++||++ .++.++||++++|++|+++..|++++.
T Consensus 148 p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~--tili~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 217 (235)
T cd03299 148 PKILLLDEPFSALDVRTKEKLREELKKIRKEFGV--TVLHVTHDF-EEAWALADKVAIMLNGKLIQVGKPEEV 217 (235)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCC--EEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999765565 999999996 578889999999999999999987655
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-44 Score=351.19 Aligned_cols=218 Identities=24% Similarity=0.353 Sum_probs=184.9
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCC--CCCceeEEEECCEeccc-
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGS--DTRQTGKILINGHKKAL- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~--~~~~~G~I~~~g~~~~~- 112 (449)
..|+++|+++.| +.+.+|+|+||+|++||+++|+||||||||||+++|+|+++| ..+.+|+|.++|++...
T Consensus 11 ~~l~i~~l~~~~------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~ 84 (259)
T PRK14274 11 EVYQINGMNLWY------GQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKG 84 (259)
T ss_pred ceEEEeeEEEEE------CCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEcccc
Confidence 368999999983 345799999999999999999999999999999999999863 21248999999987531
Q ss_pred ------ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc----hhhCccCCCCChHHH
Q 044030 113 ------AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ----DAMNTRIRRLSGGQK 182 (449)
Q Consensus 113 ------~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSgGer 182 (449)
.++.++|++|++.+++. ||+||+.+...... .....+..++++++++.+++. +..++.+.+||||||
T Consensus 85 ~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~ 161 (259)
T PRK14274 85 KVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG--TKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQ 161 (259)
T ss_pred ccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHH
Confidence 12469999999988886 99999988754321 112334456678889999985 357889999999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 183 RRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 183 qRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
||++||++|+.+|+++||||||+|||+.++..+.+.|++++ + +. |||++||++ +++.++||++++|++|+++..|
T Consensus 162 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~--tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g 236 (259)
T PRK14274 162 QRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLK-E-KY--TIVIVTHNM-QQAARVSDQTAFFYMGELVECN 236 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-c-CC--EEEEEEcCH-HHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999996 3 44 999999996 5788999999999999999999
Q ss_pred ChhhH
Q 044030 263 PATAA 267 (449)
Q Consensus 263 ~~~~~ 267 (449)
+++++
T Consensus 237 ~~~~~ 241 (259)
T PRK14274 237 DTNKM 241 (259)
T ss_pred CHHHH
Confidence 98765
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=368.25 Aligned_cols=208 Identities=31% Similarity=0.466 Sum_probs=182.1
Q ss_pred eeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---------
Q 044030 42 DLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--------- 112 (449)
Q Consensus 42 nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--------- 112 (449)
||++.| +++. + |+||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|.+...
T Consensus 4 ~l~~~~------~~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~~~ 72 (354)
T TIGR02142 4 RFSKRL------GDFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTLFDSRKGIFLPP 72 (354)
T ss_pred EEEEEE------CCEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECccCccccccch
Confidence 777772 3334 4 999999999999999999999999999999999774 8999999987521
Q ss_pred ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHH
Q 044030 113 AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEIL 192 (449)
Q Consensus 113 ~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~ 192 (449)
.++.++|++|++.+++.+||+||+.|+.... ...+.+++++++++.+||.+..++++.+|||||||||+||+||+
T Consensus 73 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~ 147 (354)
T TIGR02142 73 EKRRIGYVFQEARLFPHLSVRGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALL 147 (354)
T ss_pred hhCCeEEEecCCccCCCCcHHHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHH
Confidence 1356999999999999999999999875421 12334556889999999999999999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 193 TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 193 ~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
.+|++|||||||+|||+.++..+++.|++++++.|. |||++||++ +++..+||++++|++|+++..|+++++.
T Consensus 148 ~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~--tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 220 (354)
T TIGR02142 148 SSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGI--PILYVSHSL-QEVLRLADRVVVLEDGRVAAAGPIAEVW 220 (354)
T ss_pred cCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCC--EEEEEecCH-HHHHHhCCEEEEEeCCEEEEECCHHHHh
Confidence 999999999999999999999999999999865555 999999996 5788999999999999999999987764
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-44 Score=348.52 Aligned_cols=218 Identities=24% Similarity=0.326 Sum_probs=183.6
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCC---CCCCCceeEEEECCEeccc
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRL---GSDTRQTGKILINGHKKAL 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~---~~~~~~~G~I~~~g~~~~~ 112 (449)
+.|+++|+++.| +.+.+|+|+||++++||+++|+||||||||||+++|+|+. ++ .+.+|+|.++|.+...
T Consensus 2 ~~l~~~~~~~~~------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~-~~~~G~i~~~g~~~~~ 74 (250)
T PRK14245 2 VKIDARDVNFWY------GDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPA-TRLEGEIRIDGRNIYD 74 (250)
T ss_pred cEEEEEEEEEEE------CCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCC-CCCceEEEECCEeccc
Confidence 468999999983 3467999999999999999999999999999999999973 33 1248999999987531
Q ss_pred -------ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc----hhhCccCCCCChHH
Q 044030 113 -------AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ----DAMNTRIRRLSGGQ 181 (449)
Q Consensus 113 -------~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSgGe 181 (449)
..+.++|++|++.+++ .|+.||+.++...+. ........+.++++++.+|+. +..++++..|||||
T Consensus 75 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~ 151 (250)
T PRK14245 75 KGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNG--VKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQ 151 (250)
T ss_pred ccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHH
Confidence 1246999999998887 599999988754321 111233445678899999985 35788899999999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEe
Q 044030 182 KRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYF 261 (449)
Q Consensus 182 rqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~ 261 (449)
|||++||+||+.+|+++||||||+|||+.++..+.+.|++++ + +. |||++||++ .++.++||++++|++|++++.
T Consensus 152 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~--tiiivtH~~-~~~~~~~d~v~~l~~G~~~~~ 226 (250)
T PRK14245 152 QQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-K-DY--TIVIVTHNM-QQAARVSDKTAFFYMGEMVEY 226 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CC--eEEEEeCCH-HHHHhhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999995 4 44 999999996 478899999999999999999
Q ss_pred cChhhHH
Q 044030 262 GPATAAN 268 (449)
Q Consensus 262 g~~~~~~ 268 (449)
|+++++.
T Consensus 227 ~~~~~~~ 233 (250)
T PRK14245 227 DDTKKIF 233 (250)
T ss_pred CCHHHHh
Confidence 9987763
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-45 Score=348.59 Aligned_cols=200 Identities=28% Similarity=0.464 Sum_probs=174.2
Q ss_pred eeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHHHHH
Q 044030 59 LEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYY 138 (449)
Q Consensus 59 L~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~ 138 (449)
|+|+||++++||+++|+||||||||||+++|+|+++| .+|+|.++|.+........+|++|++.+++.+||.||+.+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~ 77 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQP---TSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIAL 77 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHH
Confidence 5799999999999999999999999999999999877 4899999998764322235899999999999999999988
Q ss_pred HHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 044030 139 SAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSR 218 (449)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~ 218 (449)
......+ .....+.++++.++++.+|+.+..++++.+||||||||++||+||+.+|++|||||||+|||+.++..+.+.
T Consensus 78 ~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~ 156 (230)
T TIGR01184 78 AVDRVLP-DLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEE 156 (230)
T ss_pred HHHhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHH
Confidence 6431111 223344456788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChh
Q 044030 219 IAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPAT 265 (449)
Q Consensus 219 l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~ 265 (449)
|++++++.|. |||++||++ .++.++||++++|++|+++..|++.
T Consensus 157 l~~~~~~~~~--tii~~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~ 200 (230)
T TIGR01184 157 LMQIWEEHRV--TVLMVTHDV-DEALLLSDRVVMLTNGPAANIGQIL 200 (230)
T ss_pred HHHHHHhcCC--EEEEEeCCH-HHHHHhcCEEEEEeCCcEecccCce
Confidence 9999865555 999999996 5788999999999999999888654
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-45 Score=348.80 Aligned_cols=200 Identities=27% Similarity=0.438 Sum_probs=174.4
Q ss_pred cccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----ccCcEEEEc-CCCCCCC
Q 044030 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----AYGTSAYVT-QDDTLIT 128 (449)
Q Consensus 54 ~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----~~~~i~yv~-Q~~~l~~ 128 (449)
+.+.+|+|+||++++||+++|+|||||||||||++|+|+++|. +|+|.++|.+... ..+.++|++ |++.+++
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 108 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT---SGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWW 108 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEccccchhhcccEEEEcCCccccCC
Confidence 5568999999999999999999999999999999999998774 8999999986421 124699998 5567888
Q ss_pred CCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Q 044030 129 TLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208 (449)
Q Consensus 129 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD 208 (449)
.+|++|++.+....+ .....+..+++.++++.+|+.+..++++..||||||||++||+||+.+|+++||||||+|||
T Consensus 109 ~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD 185 (236)
T cd03267 109 DLPVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLD 185 (236)
T ss_pred CCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 999999998876543 22334445667889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 209 SAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 209 ~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
+.++..+.+.|++++++.+. |||++||++ +++..+||++++|++|++++.|
T Consensus 186 ~~~~~~l~~~l~~~~~~~~~--tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 186 VVAQENIRNFLKEYNRERGT--TVLLTSHYM-KDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHHHHHHHHHHHHHHhcCCC--EEEEEecCH-HHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999865555 999999997 5788999999999999998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-44 Score=340.79 Aligned_cols=209 Identities=23% Similarity=0.387 Sum_probs=180.3
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---cc
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---AY 114 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---~~ 114 (449)
++++||++.| + .+++|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|++... ..
T Consensus 1 ~~~~~l~~~~------~--~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 69 (213)
T TIGR01277 1 LALDKVRYEY------E--HLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA---SGSIKVNDQSHTGLAPYQ 69 (213)
T ss_pred CeEEeeeEEe------C--CcceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccCChhc
Confidence 4689999983 1 2568999999999999999999999999999999999774 8999999987532 23
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhC
Q 044030 115 GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTR 194 (449)
Q Consensus 115 ~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~ 194 (449)
+.++|++|++.+++.+|+.||+.+...... . .....++++.++++.+|+.+..++.+.+||||||||++||+||+.+
T Consensus 70 ~~i~~v~q~~~~~~~~t~~en~~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~ 146 (213)
T TIGR01277 70 RPVSMLFQENNLFAHLTVRQNIGLGLHPGL--K-LNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRP 146 (213)
T ss_pred cceEEEeccCccCCCCcHHHHHHhHhhccC--C-ccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcC
Confidence 569999999999999999999987643211 1 1122345678899999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 195 PKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 195 P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
|++++|||||+|||+.++..+.+.|++++++.|. |||++||++ .++.++||++++|++|+++..|.
T Consensus 147 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~--tii~vsh~~-~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 147 NPILLLDEPFSALDPLLREEMLALVKQLCSERQR--TLLMVTHHL-SDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCC--EEEEEeCCH-HHHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999999999999855555 999999996 57788999999999999998874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-44 Score=347.11 Aligned_cols=217 Identities=25% Similarity=0.362 Sum_probs=182.8
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeccc--
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLG--SDTRQTGKILINGHKKAL-- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~--~~~~~~G~I~~~g~~~~~-- 112 (449)
.|+++||++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+.+ |..+.+|+|.++|++...
T Consensus 5 ~l~~~~l~~~~------~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~ 78 (252)
T PRK14239 5 ILQVSDLSVYY------NKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPR 78 (252)
T ss_pred eEEEEeeEEEE------CCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcc
Confidence 58999999983 34579999999999999999999999999999999999853 421248999999987521
Q ss_pred -----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc----hhhCccCCCCChHHHH
Q 044030 113 -----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ----DAMNTRIRRLSGGQKR 183 (449)
Q Consensus 113 -----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSgGerq 183 (449)
.++.++|++|++.+++ +||.||+.+..... + .......++++.++++.+++. +..++.+.+|||||||
T Consensus 79 ~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 155 (252)
T PRK14239 79 TDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLK-G-IKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQ 155 (252)
T ss_pred cchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHc-C-CCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHH
Confidence 1346999999998887 79999998875432 1 111233445678889999874 4578899999999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
||+||+||+.+|++|||||||+|||+.++..+.+.|++++ + +. |||++||++ +++..+||++++|++|++++.|+
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~--tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~ 230 (252)
T PRK14239 156 RVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLK-D-DY--TMLLVTRSM-QQASRISDRTGFFLDGDLIEYND 230 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHh-h-CC--eEEEEECCH-HHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999996 3 34 999999996 57889999999999999999999
Q ss_pred hhhH
Q 044030 264 ATAA 267 (449)
Q Consensus 264 ~~~~ 267 (449)
++++
T Consensus 231 ~~~~ 234 (252)
T PRK14239 231 TKQM 234 (252)
T ss_pred HHHH
Confidence 8765
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-44 Score=350.38 Aligned_cols=218 Identities=27% Similarity=0.357 Sum_probs=184.7
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeccc--
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSD--TRQTGKILINGHKKAL-- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~--~~~~G~I~~~g~~~~~-- 112 (449)
.|+++||++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|+++|. .+.+|+|+++|++...
T Consensus 19 ~l~~~nl~~~~------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~ 92 (267)
T PRK14235 19 KMRARDVSVFY------GEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPR 92 (267)
T ss_pred eEEEEeEEEEE------CCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccc
Confidence 68999999983 3457999999999999999999999999999999999998641 1358999999987531
Q ss_pred -----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch----hhCccCCCCChHHHH
Q 044030 113 -----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD----AMNTRIRRLSGGQKR 183 (449)
Q Consensus 113 -----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~~~~LSgGerq 183 (449)
.++.++|++|++.+++. ||.||+.+....+. ...+..+..+++.++++.+|+.+ ..++.+.+|||||||
T Consensus 93 ~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~q 170 (267)
T PRK14235 93 LDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHG-LARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQ 170 (267)
T ss_pred cchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhcc-cccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHH
Confidence 12469999999988875 99999998754321 01122334566888999999953 568889999999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
|++||+||+.+|++|||||||+|||+.++..+.+.|+++++ +. |||++||++ ..+..+||++++|++|+++..|+
T Consensus 171 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~--~~--tiiivtH~~-~~~~~~~d~v~~l~~G~i~~~g~ 245 (267)
T PRK14235 171 RLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ--NY--TIVIVTHSM-QQAARVSQRTAFFHLGNLVEVGD 245 (267)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc--CC--eEEEEEcCH-HHHHhhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999963 44 999999996 57889999999999999999998
Q ss_pred hhhH
Q 044030 264 ATAA 267 (449)
Q Consensus 264 ~~~~ 267 (449)
++++
T Consensus 246 ~~~~ 249 (267)
T PRK14235 246 TEKM 249 (267)
T ss_pred HHHH
Confidence 8765
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-44 Score=349.27 Aligned_cols=226 Identities=24% Similarity=0.356 Sum_probs=189.0
Q ss_pred ccccCCCCCeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEE
Q 044030 27 LINVNEDDGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSD--TRQTGKIL 104 (449)
Q Consensus 27 ~~~~~~~~~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~--~~~~G~I~ 104 (449)
.+..|. ....|+++||++.| +.+.+|+|+||++++||+++|+|||||||||||++|+|+++|. .+.+|+|.
T Consensus 11 ~~~~~~-~~~~l~~~nl~~~~------~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~ 83 (267)
T PRK14237 11 IITFPE-EEIALSTKDLHVYY------GKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQIL 83 (267)
T ss_pred eEecCC-CCeEEEEeeEEEEE------CCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEE
Confidence 334443 34579999999983 3467999999999999999999999999999999999998641 13589999
Q ss_pred ECCEeccc-------ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc----hhhCcc
Q 044030 105 INGHKKAL-------AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ----DAMNTR 173 (449)
Q Consensus 105 ~~g~~~~~-------~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~ 173 (449)
++|.+... ..+.++|++|++.+++ .||+||+.++.... + .......+.++.++++.++|. +..+++
T Consensus 84 ~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~ 160 (267)
T PRK14237 84 YRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA-G-VKDKKVLDEIVETSLKQAALWDQVKDDLHKS 160 (267)
T ss_pred ECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc-C-CCCHHHHHHHHHHHHHHcCCCchhhhhhcCC
Confidence 99987531 1346999999998887 59999998875432 1 112334456688899999984 467899
Q ss_pred CCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEe
Q 044030 174 IRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLL 253 (449)
Q Consensus 174 ~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l 253 (449)
+.+||||||||++||+||+.+|++++|||||+|||+.++..+.+.|++++ + +. |||++||++ .++.++||++++|
T Consensus 161 ~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~--tiii~tH~~-~~~~~~~d~i~~l 235 (267)
T PRK14237 161 ALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-K-NY--TIIIVTHNM-QQAARASDYTAFF 235 (267)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CC--EEEEEecCH-HHHHHhcCEEEEE
Confidence 99999999999999999999999999999999999999999999999996 3 44 999999997 4788999999999
Q ss_pred eCCeEEEecChhhH
Q 044030 254 SAGQTVYFGPATAA 267 (449)
Q Consensus 254 ~~G~iv~~g~~~~~ 267 (449)
++|++++.|+++++
T Consensus 236 ~~G~i~~~g~~~~~ 249 (267)
T PRK14237 236 YLGDLIEYDKTRNI 249 (267)
T ss_pred ECCEEEEeCCHHHH
Confidence 99999999998765
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-44 Score=347.51 Aligned_cols=218 Identities=22% Similarity=0.355 Sum_probs=185.0
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeccc-
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSD--TRQTGKILINGHKKAL- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~--~~~~G~I~~~g~~~~~- 112 (449)
..++++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+.+|. .+.+|+|.++|.+...
T Consensus 3 ~~l~~~~l~~~~------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~ 76 (251)
T PRK14270 3 IKMESKNLNLWY------GEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDK 76 (251)
T ss_pred cEEEEEEeEEEE------CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccc
Confidence 368999999983 3457999999999999999999999999999999999998641 1258999999987531
Q ss_pred ------ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc----hhhCccCCCCChHHH
Q 044030 113 ------AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ----DAMNTRIRRLSGGQK 182 (449)
Q Consensus 113 ------~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSgGer 182 (449)
..+.++|++|++.+++ +|++||+.|...... .....+..+++.++++.+++. +..++++.+||||||
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~ 153 (251)
T PRK14270 77 DVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHG--IKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQ 153 (251)
T ss_pred cccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHH
Confidence 1346999999998887 899999998754321 112334455678899999874 467889999999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 183 RRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 183 qRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
||++||+||+.+|+++||||||+|||+.++..+.+.|+++++ +. |||++||++ .++.++||++++|++|++++.|
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~~--tiiivsH~~-~~~~~~~d~v~~l~~G~i~~~~ 228 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK--EY--TIVIVTHNM-QQASRVSDYTAFFLMGDLIEFN 228 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CC--eEEEEEcCH-HHHHHhcCEEEEEECCeEEEeC
Confidence 999999999999999999999999999999999999999974 34 999999996 5788999999999999999999
Q ss_pred ChhhH
Q 044030 263 PATAA 267 (449)
Q Consensus 263 ~~~~~ 267 (449)
+++++
T Consensus 229 ~~~~~ 233 (251)
T PRK14270 229 KTEKI 233 (251)
T ss_pred CHHHH
Confidence 98765
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-44 Score=350.00 Aligned_cols=220 Identities=23% Similarity=0.337 Sum_probs=183.7
Q ss_pred CCeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEecc
Q 044030 34 DGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLG--SDTRQTGKILINGHKKA 111 (449)
Q Consensus 34 ~~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~--~~~~~~G~I~~~g~~~~ 111 (449)
....++++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+.+ +..+.+|+|.++|++..
T Consensus 18 ~~~~l~~~~l~~~~------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~ 91 (268)
T PRK14248 18 KEHILEVKDLSIYY------GEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNIL 91 (268)
T ss_pred CCceEEEEEEEEEe------CCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcc
Confidence 33468999999983 34679999999999999999999999999999999999864 21135899999998753
Q ss_pred c-------ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc----hhhCccCCCCChH
Q 044030 112 L-------AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ----DAMNTRIRRLSGG 180 (449)
Q Consensus 112 ~-------~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSgG 180 (449)
. ..+.++|++|++.+++. |+.||+.+...... .......++.+.+.++.+++. +..++++.+||||
T Consensus 92 ~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG 168 (268)
T PRK14248 92 DSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGG 168 (268)
T ss_pred cccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHH
Confidence 1 13469999999988885 99999988654321 111223345577788888884 5678999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 181 erqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
||||++||+||+.+|++|||||||+|||+.++..+.+.|+++++ +. |||++||++ .++.++||++++|++|++++
T Consensus 169 q~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~--tiii~tH~~-~~~~~~~d~v~~l~~G~i~~ 243 (268)
T PRK14248 169 QQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE--EY--SIIIVTHNM-QQALRVSDRTAFFLNGDLVE 243 (268)
T ss_pred HHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CC--EEEEEEeCH-HHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999963 34 999999996 57889999999999999999
Q ss_pred ecChhhH
Q 044030 261 FGPATAA 267 (449)
Q Consensus 261 ~g~~~~~ 267 (449)
.|+++++
T Consensus 244 ~~~~~~~ 250 (268)
T PRK14248 244 YDQTEQI 250 (268)
T ss_pred eCCHHHH
Confidence 9988765
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-45 Score=327.97 Aligned_cols=220 Identities=31% Similarity=0.461 Sum_probs=196.7
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCc
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGT 116 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~ 116 (449)
.+.+.+++.+| .+ ..+.+|+|||++|.+||.++++||||||||||||+++|+.+|. .|+|.+||++++-....
T Consensus 3 ~l~~~~~sl~y--~g--~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~---~G~i~l~~r~i~gPgae 75 (259)
T COG4525 3 MLNVSHLSLSY--EG--KPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEGPGAE 75 (259)
T ss_pred eeehhheEEec--CC--cchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcc---cceEEECCEeccCCCcc
Confidence 35677888873 12 2256999999999999999999999999999999999999884 89999999987655455
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCC
Q 044030 117 SAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPK 196 (449)
Q Consensus 117 i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~ 196 (449)
-|.|||++.++|.+||.+|+.|+.+++ ++++.++.+++.+.+..+||++..++++-+|||||||||.|||||+.+|+
T Consensus 76 rgvVFQ~~~LlPWl~~~dNvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~ 152 (259)
T COG4525 76 RGVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQ 152 (259)
T ss_pred ceeEeccCccchhhHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcc
Confidence 689999999999999999999999886 67888899999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEee--CCeEEEecChhhHHH
Q 044030 197 LLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLS--AGQTVYFGPATAANE 269 (449)
Q Consensus 197 llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~--~G~iv~~g~~~~~~~ 269 (449)
+|+||||+++||.-+++++.++|-+++++.|+ .++++||+. +|+.-+++++++|+ .|+++..-+++-.+.
T Consensus 153 ~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk--~~lliTH~i-eEAlflatrLvvlsp~pgRvv~~~~~df~rR 224 (259)
T COG4525 153 LLLLDEPFGALDALTREQMQELLLDLWQETGK--QVLLITHDI-EEALFLATRLVVLSPGPGRVVERLPLDFARR 224 (259)
T ss_pred eEeecCchhhHHHHHHHHHHHHHHHHHHHhCC--eEEEEeccH-HHHHhhhheeEEecCCCceeeEecCCCHHHH
Confidence 99999999999999999999999999988866 999999997 57788999999998 479998877764333
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-44 Score=348.32 Aligned_cols=217 Identities=25% Similarity=0.355 Sum_probs=184.6
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe-----cc
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHK-----KA 111 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~-----~~ 111 (449)
.|+++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+ ..
T Consensus 6 ~l~~~~l~~~~------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~i~ 76 (258)
T PRK11701 6 LLSVRGLTKLY------GPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD---AGEVHYRMRDGQLRDLY 76 (258)
T ss_pred eEEEeeeEEEc------CCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCccccccccc
Confidence 58999999983 3357999999999999999999999999999999999998774 8999999986 42
Q ss_pred c---------ccCcEEEEcCCC--CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccCCCCCh
Q 044030 112 L---------AYGTSAYVTQDD--TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSG 179 (449)
Q Consensus 112 ~---------~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSg 179 (449)
. ..+.++|++|++ .+++.+|+.||+.+...... .....+.+..+.++++.+++. ...++.+..|||
T Consensus 77 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~ 154 (258)
T PRK11701 77 ALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDDLPTTFSG 154 (258)
T ss_pred cCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCH
Confidence 1 123599999997 36778899999976542211 111223456688999999997 478999999999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEE
Q 044030 180 GQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTV 259 (449)
Q Consensus 180 GerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv 259 (449)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++.|. |||++||++ ..+..+||++++|++|+++
T Consensus 155 Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~--tii~isH~~-~~~~~~~d~i~~l~~g~i~ 231 (258)
T PRK11701 155 GMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGL--AVVIVTHDL-AVARLLAHRLLVMKQGRVV 231 (258)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCc--EEEEEeCCH-HHHHHhcCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999865555 999999996 5788899999999999999
Q ss_pred EecChhhH
Q 044030 260 YFGPATAA 267 (449)
Q Consensus 260 ~~g~~~~~ 267 (449)
+.|+++++
T Consensus 232 ~~~~~~~~ 239 (258)
T PRK11701 232 ESGLTDQV 239 (258)
T ss_pred EeCCHHHH
Confidence 99988765
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-44 Score=352.89 Aligned_cols=221 Identities=27% Similarity=0.384 Sum_probs=185.2
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCC-----CceeEEEECCEeccc
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDT-----RQTGKILINGHKKAL 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~-----~~~G~I~~~g~~~~~ 112 (449)
|+++|+++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|+++|.. ..+|+|.++|.+...
T Consensus 2 l~~~nl~~~~------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~ 75 (272)
T PRK13547 2 LTADHLHVAR------RHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAA 75 (272)
T ss_pred eEEEEEEEEE------CCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEccc
Confidence 7899999983 34579999999999999999999999999999999999987630 027999999987531
Q ss_pred -----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCC-CCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHH
Q 044030 113 -----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLP-DTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVS 186 (449)
Q Consensus 113 -----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ 186 (449)
..+.++|++|++.+++.+||.||+.+....... ......+..+.+.++++.+|+.+..++++..|||||||||+
T Consensus 76 ~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ 155 (272)
T PRK13547 76 IDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQ 155 (272)
T ss_pred CCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHH
Confidence 124589999998766678999999875321100 01111234456888999999999999999999999999999
Q ss_pred HHHHHH---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCe
Q 044030 187 ISIEIL---------TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQ 257 (449)
Q Consensus 187 ia~aL~---------~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~ 257 (449)
||+||+ .+|++|||||||+|||+.++..+.+.|++++++.|. |||++||++ .++.++||++++|++|+
T Consensus 156 laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~--tviiisH~~-~~~~~~~d~i~~l~~G~ 232 (272)
T PRK13547 156 FARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNL--GVLAIVHDP-NLAARHADRIAMLADGA 232 (272)
T ss_pred HHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCC--EEEEEECCH-HHHHHhCCEEEEEECCe
Confidence 999999 599999999999999999999999999999865455 999999997 57888999999999999
Q ss_pred EEEecChhhH
Q 044030 258 TVYFGPATAA 267 (449)
Q Consensus 258 iv~~g~~~~~ 267 (449)
+++.|+++++
T Consensus 233 i~~~g~~~~~ 242 (272)
T PRK13547 233 IVAHGAPADV 242 (272)
T ss_pred EEEecCHHHH
Confidence 9999988765
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-44 Score=345.05 Aligned_cols=217 Identities=24% Similarity=0.374 Sum_probs=183.3
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCC--CCCceeEEEECCEeccc--
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGS--DTRQTGKILINGHKKAL-- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~--~~~~~G~I~~~g~~~~~-- 112 (449)
.|+++||++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|+.++ ..+.+|+|.++|++...
T Consensus 3 ~l~~~~l~~~~------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~ 76 (250)
T PRK14240 3 KISVKDLDLFY------GDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSD 76 (250)
T ss_pred eEEEEEEEEEE------CCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 47899999983 345799999999999999999999999999999999998753 11248999999987531
Q ss_pred -----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc----hhhCccCCCCChHHHH
Q 044030 113 -----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ----DAMNTRIRRLSGGQKR 183 (449)
Q Consensus 113 -----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSgGerq 183 (449)
.++.++|++|++.+++ +|+.||+.+...... ..+....++.+.++++.+++. +..++++.+|||||||
T Consensus 77 ~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~q 153 (250)
T PRK14240 77 IDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHG--IKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQ 153 (250)
T ss_pred cchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHH
Confidence 1346999999998887 899999998754321 112334456788889998874 4568899999999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
|++||+||+.+|++++|||||+|||+.++..+.+.|++++ + +. |||++||++ ..+..+||++++|++|+++..|+
T Consensus 154 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~--tiii~sH~~-~~~~~~~d~v~~l~~G~i~~~~~ 228 (250)
T PRK14240 154 RLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK-K-DY--TIVIVTHNM-QQASRISDKTAFFLNGEIVEFGD 228 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CC--eEEEEEeCH-HHHHhhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999996 3 44 999999996 57889999999999999999998
Q ss_pred hhhH
Q 044030 264 ATAA 267 (449)
Q Consensus 264 ~~~~ 267 (449)
++++
T Consensus 229 ~~~~ 232 (250)
T PRK14240 229 TVDL 232 (250)
T ss_pred HHHH
Confidence 8765
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-44 Score=339.63 Aligned_cols=201 Identities=26% Similarity=0.421 Sum_probs=174.9
Q ss_pred eeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---------
Q 044030 42 DLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--------- 112 (449)
Q Consensus 42 nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--------- 112 (449)
||+++| +++.+ |+||++++ |+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 5 ~l~~~~------~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~ 72 (214)
T cd03297 5 DIEKRL------PDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPD---GGTIVLNGTVLFDSRKKINLPP 72 (214)
T ss_pred eeeEec------CCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEecccccchhhhhh
Confidence 888873 34445 99999999 999999999999999999999999774 8999999986421
Q ss_pred ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHH
Q 044030 113 AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEIL 192 (449)
Q Consensus 113 ~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~ 192 (449)
..+.++|++|++.+++.+|+.||+.+..... .....++++.++++.+|+.+..++++.+||||||||++||+||+
T Consensus 73 ~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~ 147 (214)
T cd03297 73 QQRKIGLVFQQYALFPHLNVRENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALA 147 (214)
T ss_pred HhhcEEEEecCCccCCCCCHHHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHh
Confidence 1246999999999999999999998765321 22334566889999999998899999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 193 TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 193 ~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
.+|++++|||||+|||+.++..+.+.|++++++.|. |||++||++ .++..+||++++|++|+++..|
T Consensus 148 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~--tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 148 AQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNI--PVIFVTHDL-SEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCc--EEEEEecCH-HHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999865555 999999996 5788899999999999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-44 Score=345.12 Aligned_cols=218 Identities=24% Similarity=0.383 Sum_probs=184.4
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeccc--
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSD--TRQTGKILINGHKKAL-- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~--~~~~G~I~~~g~~~~~-- 112 (449)
+|+++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+.++. .+.+|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~ 76 (250)
T PRK14262 3 IIEIENFSAYY------GEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQ 76 (250)
T ss_pred eEEEEeeEEEe------CCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccch
Confidence 58999999983 3457999999999999999999999999999999999998641 1258999999987531
Q ss_pred -----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc----hhhCccCCCCChHHHH
Q 044030 113 -----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ----DAMNTRIRRLSGGQKR 183 (449)
Q Consensus 113 -----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSgGerq 183 (449)
..+.++|++|++.+++ +|++||+.+...... .......++.+.++++.+++. +..++.+.+|||||||
T Consensus 77 ~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~q 153 (250)
T PRK14262 77 LDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQ 153 (250)
T ss_pred hhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHH
Confidence 1356999999998887 899999988754321 112233445678889999885 3578999999999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
|++||+||+.+|++++|||||+|||+.++..+.+.|++++ + +. |||++||++ +.+..+||++++|++|+++..|+
T Consensus 154 r~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~--tili~sH~~-~~~~~~~d~i~~l~~G~i~~~g~ 228 (250)
T PRK14262 154 RLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELS-E-NY--TIVIVTHNI-GQAIRIADYIAFMYRGELIEYGP 228 (250)
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHh-c-Cc--EEEEEeCCH-HHHHHhCCEEEEEECCEEEEecC
Confidence 9999999999999999999999999999999999999996 3 44 999999996 46889999999999999999999
Q ss_pred hhhHH
Q 044030 264 ATAAN 268 (449)
Q Consensus 264 ~~~~~ 268 (449)
++++.
T Consensus 229 ~~~~~ 233 (250)
T PRK14262 229 TREIV 233 (250)
T ss_pred HHHHH
Confidence 87653
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-44 Score=382.57 Aligned_cols=220 Identities=25% Similarity=0.402 Sum_probs=189.6
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
+|+++|++++| +++.+|+||||++++||+++|+||||||||||+|+|+|+++|+ +.+|+|.++|.+...
T Consensus 5 ~l~~~nl~~~~------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~~~G~i~~~g~~~~~~~~~ 77 (506)
T PRK13549 5 LLEMKNITKTF------GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHG-TYEGEIIFEGEELQASNIR 77 (506)
T ss_pred eEEEeeeEEEe------CCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHH
Confidence 58999999983 3457999999999999999999999999999999999998751 258999999987532
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHH
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIE 190 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~a 190 (449)
.++.++||+|++.+++.+||+||+.++...+.....+..+..++++++++.+|+.+..++++.+|||||||||+||+|
T Consensus 78 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~a 157 (506)
T PRK13549 78 DTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKA 157 (506)
T ss_pred HHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHH
Confidence 124699999999999999999999887543210112233445678899999999988999999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 191 ILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 191 L~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
|+.+|++|||||||+|||+.++..+++.|+++++ .|. |||++||++ .++..+||++++|++|++++.|+++++
T Consensus 158 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~--tvi~~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 158 LNKQARLLILDEPTASLTESETAVLLDIIRDLKA-HGI--ACIYISHKL-NEVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCC--EEEEEeCcH-HHHHHhcCEEEEEECCEEeeecccccC
Confidence 9999999999999999999999999999999974 455 999999996 578899999999999999999987654
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-44 Score=382.38 Aligned_cols=218 Identities=21% Similarity=0.346 Sum_probs=188.9
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
+|+++||+++| +++.+|+|+||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|.+...
T Consensus 4 ~i~~~~l~~~~------~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~ 74 (501)
T PRK10762 4 LLQLKGIDKAF------PGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD---AGSILYLGKEVTFNGPK 74 (501)
T ss_pred eEEEeeeEEEe------CCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHH
Confidence 58999999983 3467999999999999999999999999999999999999774 8999999987531
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCC-CCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHH
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLP-DTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISI 189 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~ 189 (449)
..+.++|++|++.+++.+||+||+.++...+.. ...+..+.++++.++++.+||.+..++++.+|||||||||+||+
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~ 154 (501)
T PRK10762 75 SSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAK 154 (501)
T ss_pred HHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHH
Confidence 124699999999999999999999886432210 11223344567889999999999999999999999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 190 EILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 190 aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
||+.+|++|||||||+|||+.++..+++.|+++++ .|. |||++|||+ .++..+||++++|++|+++..|+++++
T Consensus 155 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~--tvii~sHd~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 155 VLSFESKVIIMDEPTDALTDTETESLFRVIRELKS-QGR--GIVYISHRL-KEIFEICDDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred HHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHH-CCC--EEEEEeCCH-HHHHHhCCEEEEEeCCEEEEecCcCcC
Confidence 99999999999999999999999999999999974 455 999999996 578899999999999999999987653
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-44 Score=336.64 Aligned_cols=196 Identities=33% Similarity=0.588 Sum_probs=166.9
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.++|+||+|.| ..+ ++++.+|+|+||++++||+++|+||||||||||+++|+|+++|..+.+|+|.++|.+...
T Consensus 3 ~~~~~~~~~~~-~~~-~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~ 80 (202)
T cd03233 3 TLSWRNISFTT-GKG-RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEK 80 (202)
T ss_pred eEEEEccEEEe-ccC-CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhh
Confidence 57999999994 322 246789999999999999999999999999999999999987422369999999987532
Q ss_pred ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHH
Q 044030 113 AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEIL 192 (449)
Q Consensus 113 ~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~ 192 (449)
..+.++|++|++.+++.+||+||+.++.... .++++..||||||||++||+||+
T Consensus 81 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~~~~~LS~Ge~qrl~laral~ 134 (202)
T cd03233 81 YPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNEFVRGISGGERKRVSIAEALV 134 (202)
T ss_pred hcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cccchhhCCHHHHHHHHHHHHHh
Confidence 2356999999999999999999998753210 56788999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 193 TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 193 ~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
.+|+++||||||+|||+.++..+++.|++++++.+. |+|+++|+...++.+.||++++|++|++++.|
T Consensus 135 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~--t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 135 SRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKT--TTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred hCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCC--EEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 999999999999999999999999999999865444 77776665446788999999999999998764
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-44 Score=344.85 Aligned_cols=220 Identities=27% Similarity=0.395 Sum_probs=184.3
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeccc-
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDT--RQTGKILINGHKKAL- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~--~~~G~I~~~g~~~~~- 112 (449)
+.++++|+++.| +++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|.. ..+|+|.++|.+...
T Consensus 3 ~~l~~~~l~~~~------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~ 76 (252)
T PRK14272 3 LLLSAQDVNIYY------GDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGP 76 (252)
T ss_pred EEEEEeeeEEEE------CCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccC
Confidence 368999999983 34579999999999999999999999999999999999987631 137999999987531
Q ss_pred ------ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCC----chhhCccCCCCChHHH
Q 044030 113 ------AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGL----QDAMNTRIRRLSGGQK 182 (449)
Q Consensus 113 ------~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL----~~~~~~~~~~LSgGer 182 (449)
.++.++|++|++.+++.+|+.||+.+...... ....++..+.+.++++.+++ .+..+++++.||||||
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~ 154 (252)
T PRK14272 77 RVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG--IRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQ 154 (252)
T ss_pred ccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHH
Confidence 12469999999999999999999987654321 11223334556777777765 3567889999999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 183 RRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 183 qRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
||++||+||+.+|++++|||||+|||+.++..+.+.|++++ + +. |||++||++ ..+..+||++++|++|++++.|
T Consensus 155 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~--tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~ 229 (252)
T PRK14272 155 QRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLK-K-VT--TIIIVTHNM-HQAARVSDTTSFFLVGDLVEHG 229 (252)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CC--eEEEEeCCH-HHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999996 3 34 999999997 5788899999999999999999
Q ss_pred ChhhHH
Q 044030 263 PATAAN 268 (449)
Q Consensus 263 ~~~~~~ 268 (449)
+++++.
T Consensus 230 ~~~~~~ 235 (252)
T PRK14272 230 PTDQLF 235 (252)
T ss_pred CHHHHH
Confidence 987653
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-44 Score=350.18 Aligned_cols=218 Identities=22% Similarity=0.386 Sum_probs=183.2
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeccc
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDT--RQTGKILINGHKKAL 112 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~--~~~G~I~~~g~~~~~ 112 (449)
...|+++||++.| +.+.+|+|+||+|++||+++|+||||||||||+++|+|++++.. +.+|+|.++|.+...
T Consensus 11 ~~~l~i~nl~~~~------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~ 84 (269)
T PRK14259 11 NIIISLQNVTISY------GTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYD 84 (269)
T ss_pred CceEEEEeEEEEE------CCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 4579999999983 34579999999999999999999999999999999999976311 358999999987421
Q ss_pred -------ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCC----chhhCccCCCCChHH
Q 044030 113 -------AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGL----QDAMNTRIRRLSGGQ 181 (449)
Q Consensus 113 -------~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL----~~~~~~~~~~LSgGe 181 (449)
.++.++|++|++.+++. ||+||+.+..... ... ...++++.++++.+++ .+..++++.+|||||
T Consensus 85 ~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~ 159 (269)
T PRK14259 85 PRVDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARIN---GYT-GDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQ 159 (269)
T ss_pred ccCCHHHHhhceEEEccCCccchh-hHHHHHhhhhhhc---CCc-HHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHH
Confidence 12469999999988885 9999998876432 112 2234556778888876 456789999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeC------
Q 044030 182 KRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSA------ 255 (449)
Q Consensus 182 rqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~------ 255 (449)
|||++||+||+.+|++|||||||+|||+.++..+.+.|++++ + +. |||++||++ .++..+||++++|++
T Consensus 160 ~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~-~-~~--tiiivtH~~-~~~~~~~d~i~~l~~~~~~~~ 234 (269)
T PRK14259 160 QQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELK-K-NF--TIVIVTHNM-QQAVRVSDMTAFFNAEEVEGG 234 (269)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CC--EEEEEeCCH-HHHHHhcCEEEEEeccccccc
Confidence 999999999999999999999999999999999999999996 3 34 999999996 578999999999996
Q ss_pred -----CeEEEecChhhHH
Q 044030 256 -----GQTVYFGPATAAN 268 (449)
Q Consensus 256 -----G~iv~~g~~~~~~ 268 (449)
|++++.|+++++.
T Consensus 235 ~~g~~g~~~~~~~~~~~~ 252 (269)
T PRK14259 235 SGGKVGYLVEFNETKKIF 252 (269)
T ss_pred cccccceEEEeCCHHHHH
Confidence 6789999987764
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-45 Score=322.98 Aligned_cols=212 Identities=31% Similarity=0.443 Sum_probs=188.8
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecc-----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKA----- 111 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~----- 111 (449)
.|++++++++ +.. ..+...||++|++.|++||-+||+|||||||||||-+++|+..|+ +|+|.+.|++..
T Consensus 6 ii~~~~l~kt-vg~-~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~s---sGeV~l~G~~L~~ldEd 80 (228)
T COG4181 6 IIEVHHLSKT-VGQ-GEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS---SGEVRLLGQPLHKLDED 80 (228)
T ss_pred eeehhhhhhh-hcC-CCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCC---CceEEEcCcchhhcCHH
Confidence 5788999888 432 235678999999999999999999999999999999999998774 999999998742
Q ss_pred ----cccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHH
Q 044030 112 ----LAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSI 187 (449)
Q Consensus 112 ----~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i 187 (449)
.+.+++|+|||...++|+||..||+...+.+.. -+..+....+.++|+.+||.+.++.+|++|||||+|||+|
T Consensus 81 ~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~g---e~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAi 157 (228)
T COG4181 81 ARAALRARHVGFVFQSFHLIPNLTALENVALPLELRG---ESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVAL 157 (228)
T ss_pred HHHHhhccceeEEEEeeeccccchhhhhccchhhhcC---CccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHH
Confidence 134689999999999999999999999888762 2344556678899999999999999999999999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 188 SIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 188 a~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
|||++..|++||.||||-+||..+..+|.++|-.+.++.|. |.|++|||| .+..-|||.+-|..|+++.
T Consensus 158 ARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~--TlVlVTHD~--~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 158 ARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGT--TLVLVTHDP--QLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred HHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCc--eEEEEeCCH--HHHHhhhheeeeecceecc
Confidence 99999999999999999999999999999999999988766 999999997 4788899999999999874
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-44 Score=344.86 Aligned_cols=217 Identities=25% Similarity=0.372 Sum_probs=181.8
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeccc---
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLG--SDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~--~~~~~~G~I~~~g~~~~~--- 112 (449)
-+++||++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|+.+ |..+.+|+|.++|++...
T Consensus 6 ~~~~~l~~~~------~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 79 (251)
T PRK14244 6 ASVKNLNLWY------GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79 (251)
T ss_pred EEeeeEEEEE------CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhccc
Confidence 3688999883 34579999999999999999999999999999999999975 211358999999986421
Q ss_pred ----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch----hhCccCCCCChHHHHH
Q 044030 113 ----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD----AMNTRIRRLSGGQKRR 184 (449)
Q Consensus 113 ----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~~~~LSgGerqR 184 (449)
.++.++|++|++.+++. |+.||+.+....+. ........++.+.++++.+|+.+ ..++.+.+||||||||
T Consensus 80 ~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr 157 (251)
T PRK14244 80 NVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHG-LAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQR 157 (251)
T ss_pred chHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHH
Confidence 13469999999988886 99999988743321 11122334456788999999964 5678899999999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecCh
Q 044030 185 VSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264 (449)
Q Consensus 185 v~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~ 264 (449)
++||+||+.+|++|||||||+|||+.++..+.+.|++++ + +. |||++||++ .++.++||++++|++|++++.|++
T Consensus 158 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~--tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~~~~ 232 (251)
T PRK14244 158 LCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-K-NF--TIIVVTHSM-KQAKKVSDRVAFFQSGRIVEYNTT 232 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CC--eEEEEeCCH-HHHHhhcCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999985 3 44 999999997 478889999999999999999988
Q ss_pred hhH
Q 044030 265 TAA 267 (449)
Q Consensus 265 ~~~ 267 (449)
+++
T Consensus 233 ~~~ 235 (251)
T PRK14244 233 QEI 235 (251)
T ss_pred HHH
Confidence 765
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-44 Score=339.53 Aligned_cols=210 Identities=30% Similarity=0.469 Sum_probs=180.8
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
++++|+++.| . .+.+.+.+|+|+||++++|++++|+||||||||||+++|+|+++| .+|+|.++|.+...
T Consensus 2 l~~~~l~~~~-~-~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~ 76 (220)
T TIGR02982 2 ISIRNLNHYY-G-HGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSV---QEGSLKVLGQELYGASEKE 76 (220)
T ss_pred EEEEEEEEEc-c-CCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCEEhHhcCHhH
Confidence 6889999983 2 111236799999999999999999999999999999999999877 48999999987531
Q ss_pred ---ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHH
Q 044030 113 ---AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISI 189 (449)
Q Consensus 113 ---~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~ 189 (449)
..+.++|++|++.+++.+|+.||+.++..... .....+..+.+.++++.+||.+..++++.+||||||||++||+
T Consensus 77 ~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~lar 154 (220)
T TIGR02982 77 LVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIAR 154 (220)
T ss_pred HHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHH
Confidence 13569999999999999999999998765431 1234445567899999999999999999999999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeE
Q 044030 190 EILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQT 258 (449)
Q Consensus 190 aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~i 258 (449)
+|+.+|++++|||||+|||+.++..+.+.|++++++.+. |||++||++ . +.++||++++|++|++
T Consensus 155 al~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~--tii~~sh~~-~-~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 155 ALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGC--TILIVTHDN-R-ILDVADRIVHMEDGKL 219 (220)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCC--EEEEEeCCH-H-HHhhCCEEEEEECCEE
Confidence 999999999999999999999999999999999864555 999999996 3 5689999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-43 Score=349.73 Aligned_cols=219 Identities=23% Similarity=0.342 Sum_probs=187.4
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.|+++||++.| . + ...+.+|+|+||++++||+++|+||||||||||+++|+|+++| .+|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~-~-~-~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~i~~~~~~ 77 (277)
T PRK13642 4 ILEVENLVFKY-E-K-ESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEE---FEGKVKIDGELLTAENVW 77 (277)
T ss_pred eEEEEEEEEEc-C-C-CCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC---CCCEEEECCEECCcCCHH
Confidence 58999999983 2 1 1124599999999999999999999999999999999999977 48999999987531
Q ss_pred -ccCcEEEEcCCCC-CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHH
Q 044030 113 -AYGTSAYVTQDDT-LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIE 190 (449)
Q Consensus 113 -~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~a 190 (449)
..+.++|++|++. .++..||.||+.++.... .....+..++++++++.+||.+..++++..||||||||++||+|
T Consensus 78 ~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAra 154 (277)
T PRK13642 78 NLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGI 154 (277)
T ss_pred HHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHH
Confidence 1356999999974 577789999998865422 22344445678899999999999999999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 191 ILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 191 L~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
|+.+|++|||||||+|||+.++..+.+.|++++++.|. |||++||++. ++. .||++++|++|+++..|+++++.
T Consensus 155 L~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~--tiil~sH~~~-~~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (277)
T PRK13642 155 IALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQL--TVLSITHDLD-EAA-SSDRILVMKAGEIIKEAAPSELF 228 (277)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC--EEEEEeCCHH-HHH-hCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999865566 9999999974 564 69999999999999999987754
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=343.56 Aligned_cols=219 Identities=24% Similarity=0.352 Sum_probs=182.4
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeccc
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLG--SDTRQTGKILINGHKKAL 112 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~--~~~~~~G~I~~~g~~~~~ 112 (449)
+.+|+++||++.| +.+.+|+|+||++++||+++|+||||||||||+++|+|+.+ |..+.+|+|.++|.+...
T Consensus 3 ~~~l~~~~l~~~~------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~ 76 (252)
T PRK14255 3 KKIITSSDVHLFY------GKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYA 76 (252)
T ss_pred cceEEEEeEEEEE------CCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEccc
Confidence 3468999999983 34579999999999999999999999999999999999864 321248999999986521
Q ss_pred -------ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCC----chhhCccCCCCChHH
Q 044030 113 -------AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGL----QDAMNTRIRRLSGGQ 181 (449)
Q Consensus 113 -------~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL----~~~~~~~~~~LSgGe 181 (449)
..+.++|++|++.+++ .|+.||+.+...... .......++.+.+.++.+++ .+..++.+.+|||||
T Consensus 77 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq 153 (252)
T PRK14255 77 PNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAG--VKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQ 153 (252)
T ss_pred ccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHH
Confidence 1356999999998888 699999988754321 01122233456777888876 356788999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEe
Q 044030 182 KRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYF 261 (449)
Q Consensus 182 rqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~ 261 (449)
|||++||+||+.+|+++||||||+|||+.++..+.+.|+++++ +. |||++||++ .++.++||++++|++|+++..
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~--tii~vsH~~-~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14255 154 QQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD--QY--TIILVTHSM-HQASRISDKTAFFLTGNLIEF 228 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh--CC--EEEEEECCH-HHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999974 34 999999996 578899999999999999999
Q ss_pred cChhhH
Q 044030 262 GPATAA 267 (449)
Q Consensus 262 g~~~~~ 267 (449)
|++.+.
T Consensus 229 ~~~~~~ 234 (252)
T PRK14255 229 ADTKQM 234 (252)
T ss_pred CCHHHH
Confidence 988765
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=343.83 Aligned_cols=217 Identities=25% Similarity=0.384 Sum_probs=182.9
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeccc--
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLG--SDTRQTGKILINGHKKAL-- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~--~~~~~~G~I~~~g~~~~~-- 112 (449)
.|+++|+++.| +.+.+|+|+||+|++||+++|+||||||||||+++|+|+++ |..+.+|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~------~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~ 77 (251)
T PRK14251 4 IISAKDVHLSY------GNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSK 77 (251)
T ss_pred eEEEEeeEEEE------CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEccccc
Confidence 58999999983 34579999999999999999999999999999999999986 211258999999987521
Q ss_pred -----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc----hhhCccCCCCChHHHH
Q 044030 113 -----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ----DAMNTRIRRLSGGQKR 183 (449)
Q Consensus 113 -----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSgGerq 183 (449)
..+.++|++|++.+++ .||+||+.+...... ........+.+.++++.+++. ..+++.+.+|||||||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~q 154 (251)
T PRK14251 78 MDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAG--VKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQ 154 (251)
T ss_pred chHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHH
Confidence 1346999999998886 699999988654321 112223345678889999984 5578899999999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
|++||+||+.+|+++||||||+|||+.++..+.+.|++++ + +. |||++||++ .++.++||++++|++|+++..|+
T Consensus 155 r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~--tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~~~ 229 (251)
T PRK14251 155 RICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELK-H-QY--TFIMVTHNL-QQAGRISDQTAFLMNGDLIEAGP 229 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHH-c-CC--eEEEEECCH-HHHHhhcCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999996 3 34 999999996 57889999999999999999998
Q ss_pred hhhH
Q 044030 264 ATAA 267 (449)
Q Consensus 264 ~~~~ 267 (449)
++++
T Consensus 230 ~~~~ 233 (251)
T PRK14251 230 TEEM 233 (251)
T ss_pred HHHH
Confidence 8765
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=345.72 Aligned_cols=217 Identities=27% Similarity=0.381 Sum_probs=184.4
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCC--ceeEEEECCEeccc--
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTR--QTGKILINGHKKAL-- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~--~~G~I~~~g~~~~~-- 112 (449)
.|+++||++.| +++.+|+|+||++++||+++|+|+||||||||+++|+|++++..+ .+|+|.++|++...
T Consensus 7 ~l~~~~l~~~~------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 80 (259)
T PRK14260 7 AIKVKDLSFYY------NTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPR 80 (259)
T ss_pred eEEEEEEEEEE------CCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccc
Confidence 58999999983 345799999999999999999999999999999999999875312 48999999986521
Q ss_pred -----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCC----chhhCccCCCCChHHHH
Q 044030 113 -----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGL----QDAMNTRIRRLSGGQKR 183 (449)
Q Consensus 113 -----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL----~~~~~~~~~~LSgGerq 183 (449)
..+.++|++|++.+++ +|++||+.++..... ..+.....+.+.++++.+++ .+..++.+.+|||||||
T Consensus 81 ~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~q 157 (259)
T PRK14260 81 ININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQ 157 (259)
T ss_pred cchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHH
Confidence 1246999999999887 899999988754321 12233344567888999988 35678999999999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEee-----CCeE
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLS-----AGQT 258 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~-----~G~i 258 (449)
||+||+||+.+|+++||||||+|||+.++..+.+.|+++++ +. |||++||++ +++.++||++++|+ +|++
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~--tiii~tH~~-~~i~~~~d~i~~l~~~~~~~G~i 232 (259)
T PRK14260 158 RLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS--EL--TIAIVTHNM-QQATRVSDFTAFFSTDESRIGQM 232 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CC--EEEEEeCCH-HHHHHhcCeEEEEeccCCCCceE
Confidence 99999999999999999999999999999999999999963 34 999999997 57899999999998 5999
Q ss_pred EEecChhhH
Q 044030 259 VYFGPATAA 267 (449)
Q Consensus 259 v~~g~~~~~ 267 (449)
++.|+++++
T Consensus 233 ~~~~~~~~~ 241 (259)
T PRK14260 233 VEFGVTTQI 241 (259)
T ss_pred EEeCCHHHH
Confidence 999998876
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-44 Score=380.99 Aligned_cols=218 Identities=23% Similarity=0.380 Sum_probs=188.3
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.|+++|+++.| +++.+|+|+||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.+...
T Consensus 5 ~l~~~~l~~~~------~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~ 75 (510)
T PRK09700 5 YISMAGIGKSF------GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDHK 75 (510)
T ss_pred eEEEeeeEEEc------CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCC---ccEEEECCEECCCCCHH
Confidence 58999999983 3457999999999999999999999999999999999999774 8999999987532
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccC-CCC---CCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHH
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQL-PDT---MPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVS 186 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~-~~~---~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ 186 (449)
..+.++||+|++.+++.+||+||+.++..... ..+ .+..+.++++.++++.+||.+..++++.+|||||||||+
T Consensus 76 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ 155 (510)
T PRK09700 76 LAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLE 155 (510)
T ss_pred HHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHH
Confidence 12469999999999999999999987542110 001 122344567889999999999899999999999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhh
Q 044030 187 ISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATA 266 (449)
Q Consensus 187 ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~ 266 (449)
||+||+.+|++|||||||+|||+.++..+++.|++++++ |. |||++||++ .++..+||++++|++|++++.|++++
T Consensus 156 ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~--tiiivsHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (510)
T PRK09700 156 IAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKE-GT--AIVYISHKL-AEIRRICDRYTVMKDGSSVCSGMVSD 231 (510)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CC--EEEEEeCCH-HHHHHhCCEEEEEECCEEeeecchhh
Confidence 999999999999999999999999999999999999854 55 999999996 57889999999999999999998875
Q ss_pred H
Q 044030 267 A 267 (449)
Q Consensus 267 ~ 267 (449)
+
T Consensus 232 ~ 232 (510)
T PRK09700 232 V 232 (510)
T ss_pred C
Confidence 4
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-44 Score=369.74 Aligned_cols=226 Identities=27% Similarity=0.441 Sum_probs=197.1
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCC-CCceeEEEECCEecc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSD-TRQTGKILINGHKKA---- 111 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~-~~~~G~I~~~g~~~~---- 111 (449)
.|+++||+++|.. ..+...+++||||++.+||++||+|.|||||||+.++|.|++++. ...+|+|.++|.+..
T Consensus 5 lL~V~nL~v~~~~--~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~ 82 (539)
T COG1123 5 LLEVENLTVEFAT--DGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSE 82 (539)
T ss_pred eEEEeceEEEEec--CCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCH
Confidence 6899999999432 223457999999999999999999999999999999999999875 345899999998531
Q ss_pred -----cccCcEEEEcCCC--CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhC--ccCCCCChHHH
Q 044030 112 -----LAYGTSAYVTQDD--TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMN--TRIRRLSGGQK 182 (449)
Q Consensus 112 -----~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~--~~~~~LSgGer 182 (449)
.+.+.|+|+||++ .+.|-+|+.+.+.-....+. ..+.++.++++.++|+.+||.+... +++++||||||
T Consensus 83 ~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~--~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~r 160 (539)
T COG1123 83 REMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHG--KGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMR 160 (539)
T ss_pred HHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHH
Confidence 1236799999996 46777999999987766653 2347778889999999999987655 49999999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 183 RRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 183 qRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
|||.||+||+++|++||+||||++||+.++.+|+++|+++.++.|. ++|++|||+ .-+.++||+|+||++|++++.|
T Consensus 161 QRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~--a~l~ITHDl-~Vva~~aDrv~Vm~~G~iVE~G 237 (539)
T COG1123 161 QRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGM--AVLFITHDL-GVVAELADRVVVMYKGEIVETG 237 (539)
T ss_pred HHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCc--EEEEEcCCH-HHHHHhcCeEEEEECCEEEEec
Confidence 9999999999999999999999999999999999999999988866 999999997 5799999999999999999999
Q ss_pred ChhhHHH
Q 044030 263 PATAANE 269 (449)
Q Consensus 263 ~~~~~~~ 269 (449)
+++++..
T Consensus 238 ~~~~i~~ 244 (539)
T COG1123 238 PTEEILS 244 (539)
T ss_pred CHHHHHh
Confidence 9998754
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-43 Score=340.32 Aligned_cols=205 Identities=25% Similarity=0.335 Sum_probs=175.2
Q ss_pred eeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCC-CCceeEEEECCEeccc---ccCcEEEEcCCCC--CCCCCC
Q 044030 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSD-TRQTGKILINGHKKAL---AYGTSAYVTQDDT--LITTLT 131 (449)
Q Consensus 58 iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~-~~~~G~I~~~g~~~~~---~~~~i~yv~Q~~~--l~~~lT 131 (449)
+|+|+||++++|++++|+||||||||||+|+|+|+++|. .+.+|+|.++|++... ..+.++|++|++. +++.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 589999999999999999999999999999999998761 0138999999987532 1246999999984 567789
Q ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc---hhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Q 044030 132 VKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ---DAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208 (449)
Q Consensus 132 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~---~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD 208 (449)
+.|++.+..... ........+++.++++.+++. +..++++..|||||||||+||+||+.+|+++||||||+|||
T Consensus 81 ~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD 157 (230)
T TIGR02770 81 MGNHAIETLRSL---GKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLD 157 (230)
T ss_pred HHHHHHHHHHHc---CccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccC
Confidence 999998765432 112233456788999999998 67899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 209 SAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 209 ~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
+.++..+.+.|++++++.|. |||++||++ +++..+||++++|++|+++..|+++++.
T Consensus 158 ~~~~~~l~~~l~~~~~~~~~--tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 158 VVNQARVLKLLRELRQLFGT--GILLITHDL-GVVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred HHHHHHHHHHHHHHHHhcCC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999865555 999999996 5788999999999999999999887653
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-44 Score=335.89 Aligned_cols=197 Identities=31% Similarity=0.494 Sum_probs=170.1
Q ss_pred EEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecc---c----
Q 044030 40 WKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKA---L---- 112 (449)
Q Consensus 40 ~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~---~---- 112 (449)
++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+.. .
T Consensus 1 i~~l~~~~------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~ 71 (206)
T TIGR03608 1 LKNISKKF------GDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFD---SGQVYLNGKETPPLNSKKAS 71 (206)
T ss_pred CcceEEEE------CCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccchhhHH
Confidence 36788872 3457999999999999999999999999999999999998774 899999998732 1
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHH
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIE 190 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~a 190 (449)
..+.++|++|++.+++.+|++||+.+..... .....+..+++.++++.+|+.+..++++.+||||||||++||+|
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~lara 148 (206)
T TIGR03608 72 KFRREKLGYLFQNFALIENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARA 148 (206)
T ss_pred HHHHhCeeEEecchhhccCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHH
Confidence 1246999999999999999999999875432 22334455678899999999999999999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEe
Q 044030 191 ILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLL 253 (449)
Q Consensus 191 L~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l 253 (449)
|+.+|+++||||||+|||+.++..+.+.|++++++ |. |||++||++. ....||++++|
T Consensus 149 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~--tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 149 ILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDE-GK--TIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred HHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhc-CC--EEEEEeCCHH--HHhhcCEEEeC
Confidence 99999999999999999999999999999999754 55 9999999973 45689999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-43 Score=341.97 Aligned_cols=217 Identities=24% Similarity=0.322 Sum_probs=183.0
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeccc--
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSD--TRQTGKILINGHKKAL-- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~--~~~~G~I~~~g~~~~~-- 112 (449)
.++++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+.+|. .+.+|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~ 76 (249)
T PRK14253 3 KFNIENLDLFY------GENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNI 76 (249)
T ss_pred eEEEeccEEEE------CCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEccccc
Confidence 57899999983 3467999999999999999999999999999999999998752 1248999999987521
Q ss_pred ----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc----hhhCccCCCCChHHHHH
Q 044030 113 ----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ----DAMNTRIRRLSGGQKRR 184 (449)
Q Consensus 113 ----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSgGerqR 184 (449)
.++.++|++|++.+++ .||.||+.+...... ........+++.+.++.+++. +..++++.+||||||||
T Consensus 77 ~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qr 153 (249)
T PRK14253 77 DVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQG--IKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQR 153 (249)
T ss_pred chHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcC--CCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHH
Confidence 1346999999999887 799999988654321 112233445677888888874 45688899999999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecCh
Q 044030 185 VSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264 (449)
Q Consensus 185 v~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~ 264 (449)
|+||+||+.+|+++||||||+|||+.++..+.+.|+++++ +. |||++||++ .++.++||++++|++|+++..|++
T Consensus 154 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~--tii~~sh~~-~~~~~~~d~i~~l~~G~i~~~g~~ 228 (249)
T PRK14253 154 LCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK--NY--TIVIVTHSM-QQARRISDRTAFFLMGELVEHDDT 228 (249)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CC--eEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999974 34 999999996 578999999999999999999988
Q ss_pred hhH
Q 044030 265 TAA 267 (449)
Q Consensus 265 ~~~ 267 (449)
+++
T Consensus 229 ~~~ 231 (249)
T PRK14253 229 QVI 231 (249)
T ss_pred HHH
Confidence 755
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-43 Score=341.68 Aligned_cols=217 Identities=26% Similarity=0.347 Sum_probs=183.2
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeccc--
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDT--RQTGKILINGHKKAL-- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~--~~~G~I~~~g~~~~~-- 112 (449)
.|+++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+.++.. +.+|+|.++|++...
T Consensus 6 ~i~~~~l~~~~------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 79 (253)
T PRK14261 6 ILSTKNLNLWY------GEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSG 79 (253)
T ss_pred eEEEeeeEEEE------CCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccc
Confidence 68999999983 34679999999999999999999999999999999999875311 248999999987531
Q ss_pred -----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc----hhhCccCCCCChHHHH
Q 044030 113 -----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ----DAMNTRIRRLSGGQKR 183 (449)
Q Consensus 113 -----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSgGerq 183 (449)
..+.++|++|++.+++. ||+||+.+....+. .......++.+.++++.+++. +..++.+..|||||||
T Consensus 80 ~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~q 156 (253)
T PRK14261 80 ADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHG--EKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQ 156 (253)
T ss_pred cchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcC--CCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHH
Confidence 12469999999988885 99999998765431 112233445677888888874 4578899999999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
|++||+||+.+|+++||||||+|||+.++..+.+.|+++++ +. |||++||++ .++.++||++++|++|+++..|+
T Consensus 157 rv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~--~~--tvii~sh~~-~~~~~~~d~v~~l~~G~i~~~g~ 231 (253)
T PRK14261 157 RLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK--EY--TVIIVTHNM-QQAARVSDYTGFMYLGKLIEFDK 231 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh--Cc--eEEEEEcCH-HHHHhhCCEEEEEECCEEEEcCC
Confidence 99999999999999999999999999999999999999974 34 999999996 57888999999999999999999
Q ss_pred hhhH
Q 044030 264 ATAA 267 (449)
Q Consensus 264 ~~~~ 267 (449)
++++
T Consensus 232 ~~~~ 235 (253)
T PRK14261 232 TTQI 235 (253)
T ss_pred HHHH
Confidence 8765
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=377.53 Aligned_cols=211 Identities=23% Similarity=0.372 Sum_probs=186.9
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.|+++||++.| +++.+|+|+||+|++|++++|+||||||||||||+|+|+++|. +|+|.++|.+...
T Consensus 11 ~l~~~~l~~~~------~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~ 81 (510)
T PRK15439 11 LLCARSISKQY------SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD---SGTLEIGGNPCARLTPA 81 (510)
T ss_pred eEEEEeEEEEe------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHH
Confidence 58999999983 3467999999999999999999999999999999999999774 8999999987532
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHH
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIE 190 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~a 190 (449)
..+.++|++|++.+++.+||.||+.+.... ..+.++++.++++.+||.+..++++.+|||||||||+||+|
T Consensus 82 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~a 154 (510)
T PRK15439 82 KAHQLGIYLVPQEPLLFPNLSVKENILFGLPK-------RQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRG 154 (510)
T ss_pred HHHhCCEEEEeccCccCCCCcHHHHhhccccc-------chHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHH
Confidence 124599999999999999999999875321 12344678899999999999999999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 191 ILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 191 L~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
|+.+|++|||||||+|||+.++..+.+.|++++++ |. |||++||++ .++..+||++++|++|++++.|++++.
T Consensus 155 L~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~--tiiivtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (510)
T PRK15439 155 LMRDSRILILDEPTASLTPAETERLFSRIRELLAQ-GV--GIVFISHKL-PEIRQLADRISVMRDGTIALSGKTADL 227 (510)
T ss_pred HHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEEecChHHc
Confidence 99999999999999999999999999999999854 55 999999996 578899999999999999999988764
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-43 Score=342.27 Aligned_cols=217 Identities=26% Similarity=0.356 Sum_probs=182.6
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe-----cc
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHK-----KA 111 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~-----~~ 111 (449)
.|+++||++.| +++.+|+|+||+|++|++++|+||||||||||+++|+|+.+|. +|+|.++|.+ ..
T Consensus 3 ~l~~~~l~~~~------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~ 73 (253)
T TIGR02323 3 LLQVSGLSKSY------GGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD---HGTATYIMRSGAELELY 73 (253)
T ss_pred eEEEeeeEEEe------CCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEEecccccccccc
Confidence 58999999983 3456999999999999999999999999999999999998774 8999999865 32
Q ss_pred c---------ccCcEEEEcCCCC--CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccCCCCCh
Q 044030 112 L---------AYGTSAYVTQDDT--LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSG 179 (449)
Q Consensus 112 ~---------~~~~i~yv~Q~~~--l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSg 179 (449)
. ..+.++|++|++. +++.+|+.+|+.+...... ........+.+.++++.+|+. ...++.+..|||
T Consensus 74 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSg 151 (253)
T TIGR02323 74 QLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIG--ARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSG 151 (253)
T ss_pred cCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhc--ccchHHHHHHHHHHHHHcCCChhhhhcCchhcCH
Confidence 1 0235899999974 4566799999976432110 011123346788999999997 588999999999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEE
Q 044030 180 GQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTV 259 (449)
Q Consensus 180 GerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv 259 (449)
||||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++.|. |||++||++ ..+..+||++++|++|+++
T Consensus 152 G~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~--tii~vsH~~-~~~~~~~d~~~~l~~G~i~ 228 (253)
T TIGR02323 152 GMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGL--AVIIVTHDL-GVARLLAQRLLVMQQGRVV 228 (253)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCC--EEEEEeCCH-HHHHHhcCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999998755555 999999996 5788899999999999999
Q ss_pred EecChhhH
Q 044030 260 YFGPATAA 267 (449)
Q Consensus 260 ~~g~~~~~ 267 (449)
..|+++++
T Consensus 229 ~~~~~~~~ 236 (253)
T TIGR02323 229 ESGLTDQV 236 (253)
T ss_pred EECCHHHH
Confidence 99988755
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-43 Score=342.42 Aligned_cols=216 Identities=20% Similarity=0.334 Sum_probs=183.4
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCC-CceeEEEECCEeccc---
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDT-RQTGKILINGHKKAL--- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~-~~~G~I~~~g~~~~~--- 112 (449)
.|+++||++.| ++.+|+|+||++++||+++|+||||||||||+++|+|+.+|.. +.+|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~-------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~ 76 (254)
T PRK10418 4 QIELRNIALQA-------AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCAL 76 (254)
T ss_pred EEEEeCeEEEe-------ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccccc
Confidence 68999999983 1369999999999999999999999999999999999987621 148999999987532
Q ss_pred ccCcEEEEcCCCC--CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch---hhCccCCCCChHHHHHHHH
Q 044030 113 AYGTSAYVTQDDT--LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD---AMNTRIRRLSGGQKRRVSI 187 (449)
Q Consensus 113 ~~~~i~yv~Q~~~--l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~~~~LSgGerqRv~i 187 (449)
..+.++|++|++. +.+.+|+.+++.+.+... .... ..+++.++++.+++.+ ..++.+..|||||||||+|
T Consensus 77 ~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~l 151 (254)
T PRK10418 77 RGRKIATIMQNPRSAFNPLHTMHTHARETCLAL---GKPA--DDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMI 151 (254)
T ss_pred ccceEEEEecCCccccCccccHHHHHHHHHHHc---CCCh--HHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHH
Confidence 1246999999974 456689999987654322 1111 2356889999999986 5799999999999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 188 SIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 188 a~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
|+||+.+|++|||||||+|||+.++..+.+.|++++++.|. |||++||++ +++..+||++++|++|+++..|+++++
T Consensus 152 aral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~--til~~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 228 (254)
T PRK10418 152 ALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRAL--GMLLVTHDM-GVVARLADDVAVMSHGRIVEQGDVETL 228 (254)
T ss_pred HHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCc--EEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999999999999865555 999999996 568889999999999999999998765
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-44 Score=327.51 Aligned_cols=218 Identities=27% Similarity=0.419 Sum_probs=188.5
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc---
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA--- 113 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~--- 113 (449)
+|+.+||+++ . .++.+|++||++++|||++||+||||||||||||.|+|.+.|+ +|++.+||.+....
T Consensus 1 mi~a~nls~~-~-----~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~---~G~v~~~g~~l~~~~~~ 71 (259)
T COG4559 1 MIRAENLSYS-L-----AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPE 71 (259)
T ss_pred CeeeeeeEEE-e-----ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC---CCeEeeCCcChhhCCHH
Confidence 4788999998 3 5678999999999999999999999999999999999999775 89999999875421
Q ss_pred --cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHH
Q 044030 114 --YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEI 191 (449)
Q Consensus 114 --~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL 191 (449)
.++-+.+||+..+-...||+|-+.++...... +....+..+.+++.|...++.+.+.+....|||||||||.+||.|
T Consensus 72 ~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~-g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvL 150 (259)
T COG4559 72 ELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRS-GREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVL 150 (259)
T ss_pred HHHHHhhhcccCcccccceEHHHHHHhccccccc-CCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHH
Confidence 24568999999885556999999998643311 112234556688999999999999999999999999999999999
Q ss_pred Hh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChh
Q 044030 192 LT------RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPAT 265 (449)
Q Consensus 192 ~~------~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~ 265 (449)
++ ++++||||||||.||...+..++++.++++++ |. .|+++.||.+ ....+||+|++|++|+++..|+|+
T Consensus 151 aQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~-g~--~V~~VLHDLN-LAA~YaDrivll~~Grv~a~g~p~ 226 (259)
T COG4559 151 AQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE-GG--AVLAVLHDLN-LAAQYADRIVLLHQGRVIASGSPQ 226 (259)
T ss_pred HHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc-CC--cEEEEEccch-HHHHhhheeeeeeCCeEeecCCHH
Confidence 87 45689999999999999999999999999965 34 9999999985 688999999999999999999998
Q ss_pred hHH
Q 044030 266 AAN 268 (449)
Q Consensus 266 ~~~ 268 (449)
++.
T Consensus 227 ~vl 229 (259)
T COG4559 227 DVL 229 (259)
T ss_pred Hhc
Confidence 764
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-43 Score=342.59 Aligned_cols=220 Identities=26% Similarity=0.370 Sum_probs=185.6
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeccc--
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDT--RQTGKILINGHKKAL-- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~--~~~G~I~~~g~~~~~-- 112 (449)
.|+++|+++.| +...+|+|+||++++||+++|+||||||||||+++|+|+++|+. ..+|+|.++|++...
T Consensus 7 ~l~~~nl~~~~------~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~ 80 (261)
T PRK14258 7 AIKVNNLSFYY------DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERR 80 (261)
T ss_pred eEEEeeEEEEe------CCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccc
Confidence 58999999983 33469999999999999999999999999999999999987621 137999999987421
Q ss_pred -----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc----hhhCccCCCCChHHHH
Q 044030 113 -----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ----DAMNTRIRRLSGGQKR 183 (449)
Q Consensus 113 -----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSgGerq 183 (449)
..+.++|++|++.+++ +|+.||+.+...... ..+..+..+++.++++.+++. +..++.+..|||||||
T Consensus 81 ~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~q 157 (261)
T PRK14258 81 VNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVG--WRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQ 157 (261)
T ss_pred cchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHH
Confidence 1346999999998888 899999988654321 012333445678899999874 4578899999999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeC-----CeE
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSA-----GQT 258 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~-----G~i 258 (449)
|++||++|+.+|+++||||||+|||+.++..+.+.|++++++.|. |||++||++ .++.++||++++|++ |++
T Consensus 158 rv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~--tiiivsH~~-~~i~~~~d~i~~l~~~~~~~G~i 234 (261)
T PRK14258 158 RLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSEL--TMVIVSHNL-HQVSRLSDFTAFFKGNENRIGQL 234 (261)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCC--EEEEEECCH-HHHHHhcCEEEEEccCCCcCceE
Confidence 999999999999999999999999999999999999998754455 999999996 578999999999999 999
Q ss_pred EEecChhhHH
Q 044030 259 VYFGPATAAN 268 (449)
Q Consensus 259 v~~g~~~~~~ 268 (449)
++.|+++++.
T Consensus 235 ~~~~~~~~~~ 244 (261)
T PRK14258 235 VEFGLTKKIF 244 (261)
T ss_pred EEeCCHHHHH
Confidence 9999998763
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-43 Score=340.46 Aligned_cols=217 Identities=23% Similarity=0.317 Sum_probs=182.5
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeccc--
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDT--RQTGKILINGHKKAL-- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~--~~~G~I~~~g~~~~~-- 112 (449)
.++++||++.| +++.+|+|+||+|++|++++|+||||||||||+++|+|+++|.. +.+|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~------~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~ 77 (251)
T PRK14249 4 KIKIRGVNFFY------HKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPN 77 (251)
T ss_pred eEEEEEEEEEE------CCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccc
Confidence 47899999983 34569999999999999999999999999999999999987631 236999999986521
Q ss_pred -----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc----hhhCccCCCCChHHHH
Q 044030 113 -----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ----DAMNTRIRRLSGGQKR 183 (449)
Q Consensus 113 -----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSgGerq 183 (449)
.++.++|++|++.+++. |+.||+.+....+. ....+...+.++++++.+++. +..++.+.+|||||||
T Consensus 78 ~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~q 154 (251)
T PRK14249 78 LDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLG--TTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQ 154 (251)
T ss_pred cChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcC--CChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHH
Confidence 13569999999998885 99999998754321 011223345577788888864 4678999999999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
||+||+||+.+|+++||||||+|||+.++..+.+.|++++ + +. |||++||++ .++..+||++++|++|++++.|+
T Consensus 155 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~--tilivsh~~-~~~~~~~d~i~~l~~G~i~~~~~ 229 (251)
T PRK14249 155 RLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-Q-NY--TIAIVTHNM-QQAARASDWTGFLLTGDLVEYGR 229 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CC--EEEEEeCCH-HHHHhhCCEEEEEeCCeEEEeCC
Confidence 9999999999999999999999999999999999999985 3 44 999999996 57889999999999999999999
Q ss_pred hhhH
Q 044030 264 ATAA 267 (449)
Q Consensus 264 ~~~~ 267 (449)
++++
T Consensus 230 ~~~~ 233 (251)
T PRK14249 230 TGEI 233 (251)
T ss_pred HHHH
Confidence 8765
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-43 Score=347.27 Aligned_cols=219 Identities=23% Similarity=0.343 Sum_probs=183.6
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeccc
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLG--SDTRQTGKILINGHKKAL 112 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~--~~~~~~G~I~~~g~~~~~ 112 (449)
...|+++||++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|+.+ |..+.+|+|.++|.+...
T Consensus 37 ~~~l~~~~l~~~~------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~ 110 (286)
T PRK14275 37 KPHVVAKNFSIYY------GEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYG 110 (286)
T ss_pred ceEEEEeeeEEEE------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhh
Confidence 3468999999983 33569999999999999999999999999999999999854 211258999999986421
Q ss_pred -------ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCC----chhhCccCCCCChHH
Q 044030 113 -------AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGL----QDAMNTRIRRLSGGQ 181 (449)
Q Consensus 113 -------~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL----~~~~~~~~~~LSgGe 181 (449)
.++.++|++|++.+++. ||.||+.+...... ..+....++++.++++.+|+ .+..++++..|||||
T Consensus 111 ~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq 187 (286)
T PRK14275 111 KFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHG--INDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQ 187 (286)
T ss_pred cccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHH
Confidence 13469999999988875 99999998754321 11223334567788888887 456789999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEe
Q 044030 182 KRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYF 261 (449)
Q Consensus 182 rqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~ 261 (449)
||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++ +. |||++||++ .++.++||++++|++|+++..
T Consensus 188 ~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~--tvIivsH~~-~~~~~~~d~i~~L~~G~i~~~ 262 (286)
T PRK14275 188 QQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG--SY--TIMIVTHNM-QQASRVSDYTMFFYEGVLVEH 262 (286)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CC--eEEEEeCCH-HHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999973 34 999999996 578889999999999999999
Q ss_pred cChhhH
Q 044030 262 GPATAA 267 (449)
Q Consensus 262 g~~~~~ 267 (449)
|+++++
T Consensus 263 g~~~~~ 268 (286)
T PRK14275 263 APTAQL 268 (286)
T ss_pred CCHHHH
Confidence 998765
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-43 Score=343.95 Aligned_cols=219 Identities=23% Similarity=0.347 Sum_probs=182.5
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeccc
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLG--SDTRQTGKILINGHKKAL 112 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~--~~~~~~G~I~~~g~~~~~ 112 (449)
...|+++|+++.| +++.+|+|+||+|++||+++|+|+||||||||+++|+|+++ |..+.+|+|.++|.+...
T Consensus 22 ~~~l~~~~l~~~~------~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~ 95 (271)
T PRK14238 22 KVVFDTQNLNLWY------GEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFD 95 (271)
T ss_pred ceEEEEeeeEEEE------CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccc
Confidence 3469999999983 34569999999999999999999999999999999999986 211358999999987521
Q ss_pred -------ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcC----CchhhCccCCCCChHH
Q 044030 113 -------AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMG----LQDAMNTRIRRLSGGQ 181 (449)
Q Consensus 113 -------~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg----L~~~~~~~~~~LSgGe 181 (449)
..+.++|++|++.+++. ||.||+.++..... .......++.+.++++.++ +.+..++++.+|||||
T Consensus 96 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe 172 (271)
T PRK14238 96 KSYSVEELRTNVGMVFQKPNPFPK-SIYDNVTYGPKIHG--IKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQ 172 (271)
T ss_pred ccccHHHHhhhEEEEecCCccccc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHH
Confidence 13469999999988875 99999998754321 1122223445677777774 4556788999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEe
Q 044030 182 KRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYF 261 (449)
Q Consensus 182 rqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~ 261 (449)
|||++||++|+.+|+++||||||+|||+.++..+.+.|+++++ +. |||++||++ +++..+||++++|++|+++..
T Consensus 173 ~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~--tiiivsH~~-~~i~~~~d~i~~l~~G~i~~~ 247 (271)
T PRK14238 173 QQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK--DY--SIIIVTHNM-QQAARISDKTAFFLNGYVNEY 247 (271)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc--CC--EEEEEEcCH-HHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999973 44 999999996 578899999999999999999
Q ss_pred cChhhH
Q 044030 262 GPATAA 267 (449)
Q Consensus 262 g~~~~~ 267 (449)
|+++++
T Consensus 248 g~~~~~ 253 (271)
T PRK14238 248 DDTDKI 253 (271)
T ss_pred CCHHHH
Confidence 988765
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-43 Score=344.02 Aligned_cols=219 Identities=26% Similarity=0.345 Sum_probs=184.8
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeccc
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSD--TRQTGKILINGHKKAL 112 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~--~~~~G~I~~~g~~~~~ 112 (449)
.-.++++|+++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|++++. .+.+|+|.++|.+...
T Consensus 23 ~~~l~~~nl~~~~------~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~ 96 (272)
T PRK14236 23 QTALEVRNLNLFY------GDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYD 96 (272)
T ss_pred CcEEEEEEEEEEE------CCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcc
Confidence 3469999999983 3457999999999999999999999999999999999998641 1358999999987531
Q ss_pred -------ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc----hhhCccCCCCChHH
Q 044030 113 -------AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ----DAMNTRIRRLSGGQ 181 (449)
Q Consensus 113 -------~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSgGe 181 (449)
.++.++|++|++.+++. |+.||+.+...... .......++.+.++++.+++. +..++.+.+|||||
T Consensus 97 ~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq 173 (272)
T PRK14236 97 KKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQG--INNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQ 173 (272)
T ss_pred cccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHH
Confidence 13569999999988886 99999988754321 112233345678889999985 35788999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEe
Q 044030 182 KRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYF 261 (449)
Q Consensus 182 rqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~ 261 (449)
||||+||+||+.+|+++||||||+|||+.++..+.+.|++++ + +. |||++||++ +++.+.||++++|++|+++..
T Consensus 174 ~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~-~-~~--tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~ 248 (272)
T PRK14236 174 QQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELK-S-KY--TIVIVTHNM-QQAARVSDYTAFMYMGKLVEY 248 (272)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-h-CC--eEEEEeCCH-HHHHhhCCEEEEEECCEEEec
Confidence 999999999999999999999999999999999999999997 3 44 999999996 578899999999999999999
Q ss_pred cChhhH
Q 044030 262 GPATAA 267 (449)
Q Consensus 262 g~~~~~ 267 (449)
|++++.
T Consensus 249 g~~~~~ 254 (272)
T PRK14236 249 GDTDTL 254 (272)
T ss_pred CCHHHH
Confidence 988765
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=367.77 Aligned_cols=226 Identities=27% Similarity=0.403 Sum_probs=195.1
Q ss_pred CCeeEEEEeeEEEEeecC-----cccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 044030 34 DGVFLTWKDLTVTIVSNG-----KKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH 108 (449)
Q Consensus 34 ~~~~l~~~nls~~~~~~~-----~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~ 108 (449)
....++++||++.|...+ ..+...+++||||++.+||++||+|+||||||||.|+|+|+.+|. +|+|.++|.
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~---~G~i~~~g~ 353 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS---SGSIIFDGQ 353 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEEeCc
Confidence 345689999999953211 123467999999999999999999999999999999999999884 899999997
Q ss_pred eccc-------ccCcEEEEcCCC--CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch-hhCccCCCCC
Q 044030 109 KKAL-------AYGTSAYVTQDD--TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD-AMNTRIRRLS 178 (449)
Q Consensus 109 ~~~~-------~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LS 178 (449)
+.+. .++.+-+|||++ .+.|.+||.+++......+... ...+.++++.++++.+||.. .+++++++||
T Consensus 354 ~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~--~~~~~~~rv~~ll~~VgL~~~~l~ryP~elS 431 (539)
T COG1123 354 DLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGG--SGAERRARVAELLELVGLPPEFLDRYPHELS 431 (539)
T ss_pred ccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhccc--chHHHHHHHHHHHHHcCCCHHHHhcCchhcC
Confidence 6211 124567777875 6899999999999887665322 24566678999999999986 7999999999
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeE
Q 044030 179 GGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQT 258 (449)
Q Consensus 179 gGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~i 258 (449)
||||||++|||||+.+|++|++|||||.||+..+.+++++|+++.++.|. |.|++|||+ ..+..+||||++|++|++
T Consensus 432 GGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~--t~lfISHDl-~vV~~i~drv~vm~~G~i 508 (539)
T COG1123 432 GGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGL--TYLFISHDL-AVVRYIADRVAVMYDGRI 508 (539)
T ss_pred cchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCC--EEEEEeCCH-HHHHhhCceEEEEECCeE
Confidence 99999999999999999999999999999999999999999999988877 999999996 689999999999999999
Q ss_pred EEecChhhH
Q 044030 259 VYFGPATAA 267 (449)
Q Consensus 259 v~~g~~~~~ 267 (449)
|..|+.+++
T Consensus 509 VE~G~~~~v 517 (539)
T COG1123 509 VEEGPTEKV 517 (539)
T ss_pred EEeCCHHHH
Confidence 999988766
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-43 Score=343.99 Aligned_cols=219 Identities=24% Similarity=0.359 Sum_probs=185.7
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeccc-
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSD--TRQTGKILINGHKKAL- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~--~~~~G~I~~~g~~~~~- 112 (449)
..|+++||++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|+++|. .+.+|+|.++|.+...
T Consensus 20 ~~l~i~nl~~~~------~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~ 93 (276)
T PRK14271 20 PAMAAVNLTLGF------AGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNY 93 (276)
T ss_pred cEEEEeeEEEEE------CCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEcccc
Confidence 468999999983 3467999999999999999999999999999999999998751 1358999999987531
Q ss_pred -----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch----hhCccCCCCChHHHH
Q 044030 113 -----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD----AMNTRIRRLSGGQKR 183 (449)
Q Consensus 113 -----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~~~~LSgGerq 183 (449)
..+.++|++|++.+++ .|++||+.+...... ..+..+....+.++++.+++.+ ..++.+.+|||||||
T Consensus 94 ~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~q 170 (276)
T PRK14271 94 RDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHK--LVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQ 170 (276)
T ss_pred chhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHH
Confidence 1356999999998888 799999988653221 1233444456778899999864 467889999999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
|++||+||+.+|+++||||||+|||+.++..+.+.|+++++ +. |||++||++ .++.++||++++|++|+++..|+
T Consensus 171 rl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~--tiiivsH~~-~~~~~~~dri~~l~~G~i~~~g~ 245 (276)
T PRK14271 171 LLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD--RL--TVIIVTHNL-AQAARISDRAALFFDGRLVEEGP 245 (276)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--CC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999974 24 999999996 57889999999999999999999
Q ss_pred hhhHH
Q 044030 264 ATAAN 268 (449)
Q Consensus 264 ~~~~~ 268 (449)
++++.
T Consensus 246 ~~~~~ 250 (276)
T PRK14271 246 TEQLF 250 (276)
T ss_pred HHHHH
Confidence 87663
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-43 Score=343.36 Aligned_cols=222 Identities=27% Similarity=0.373 Sum_probs=186.8
Q ss_pred eEEEEeeEEEEeec----CcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc
Q 044030 37 FLTWKDLTVTIVSN----GKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~----~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~ 112 (449)
+|+++||++.| .. ++..++.+|+|+||++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+...
T Consensus 3 ~l~~~nl~~~~-~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~sG~i~~~g~~~~~ 78 (268)
T PRK10419 3 LLNVSGLSHHY-AHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESP---SQGNVSWRGEPLAK 78 (268)
T ss_pred eEEEeceEEEe-cCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEeccc
Confidence 48899999983 21 000136799999999999999999999999999999999999876 49999999986421
Q ss_pred --------ccCcEEEEcCCC--CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccCCCCChHH
Q 044030 113 --------AYGTSAYVTQDD--TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSGGQ 181 (449)
Q Consensus 113 --------~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGe 181 (449)
..+.++|++|++ .+++..|+.|++.+...... .....+...+++++++.+|+. ...++.+..|||||
T Consensus 79 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge 156 (268)
T PRK10419 79 LNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLL--SLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQ 156 (268)
T ss_pred cChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhc--cCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHH
Confidence 134699999997 46778899999976543211 123344455789999999997 68899999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEe
Q 044030 182 KRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYF 261 (449)
Q Consensus 182 rqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~ 261 (449)
|||++||+||+.+|++|||||||+|||+.++..+.+.|++++++.|. |||++||++ .++.++||++++|++|++++.
T Consensus 157 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~--tiiivsH~~-~~i~~~~d~i~~l~~G~i~~~ 233 (268)
T PRK10419 157 LQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGT--ACLFITHDL-RLVERFCQRVMVMDNGQIVET 233 (268)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCc--EEEEEECCH-HHHHHhCCEEEEEECCEEeee
Confidence 99999999999999999999999999999999999999999865555 999999996 578889999999999999999
Q ss_pred cChhhH
Q 044030 262 GPATAA 267 (449)
Q Consensus 262 g~~~~~ 267 (449)
|+++++
T Consensus 234 g~~~~~ 239 (268)
T PRK10419 234 QPVGDK 239 (268)
T ss_pred CChhhc
Confidence 988764
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-43 Score=344.23 Aligned_cols=217 Identities=25% Similarity=0.385 Sum_probs=183.3
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeccc
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDT--RQTGKILINGHKKAL 112 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~--~~~G~I~~~g~~~~~ 112 (449)
...|+++||++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|++++.. +.+|+|.++|.+...
T Consensus 37 ~~~l~i~~l~~~~------~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~ 110 (285)
T PRK14254 37 ETVIEARDLNVFY------GDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYD 110 (285)
T ss_pred CceEEEEEEEEEE------CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccc
Confidence 4468999999983 34579999999999999999999999999999999999986311 258999999987521
Q ss_pred -------ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc----hhhCccCCCCChHH
Q 044030 113 -------AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ----DAMNTRIRRLSGGQ 181 (449)
Q Consensus 113 -------~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSgGe 181 (449)
..+.++|++|++.+++. ||.||+.+..... .... ...+++.++++.+|+. +..++++.+|||||
T Consensus 111 ~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~---~~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe 185 (285)
T PRK14254 111 ADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQ---GYDG-DIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQ 185 (285)
T ss_pred cccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHc---CCcH-HHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHH
Confidence 13569999999988886 9999998875432 1222 3345688999999984 46789999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEE-EeeCCeEEE
Q 044030 182 KRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLC-LLSAGQTVY 260 (449)
Q Consensus 182 rqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~-~l~~G~iv~ 260 (449)
||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++ +. |||++||++ .++..+||+++ +|++|+++.
T Consensus 186 ~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~--~~--tiii~tH~~-~~i~~~~dri~v~l~~G~i~~ 260 (285)
T PRK14254 186 QQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE--EY--TVVIVTHNM-QQAARISDKTAVFLTGGELVE 260 (285)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CC--EEEEEeCCH-HHHHhhcCEEEEEeeCCEEEE
Confidence 9999999999999999999999999999999999999999974 24 999999996 57888999975 579999999
Q ss_pred ecChhhH
Q 044030 261 FGPATAA 267 (449)
Q Consensus 261 ~g~~~~~ 267 (449)
.|+++++
T Consensus 261 ~g~~~~~ 267 (285)
T PRK14254 261 FDDTDKI 267 (285)
T ss_pred eCCHHHH
Confidence 9988765
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-44 Score=342.51 Aligned_cols=212 Identities=25% Similarity=0.419 Sum_probs=173.8
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
++++|+++.| . .+.+.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 1 i~~~~l~~~~-~---~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~ 73 (237)
T cd03252 1 ITFEHVRFRY-K---PDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE---NGRVLVDGHDLALADPAW 73 (237)
T ss_pred CEEEEEEEec-C---CCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCeehHhcCHHH
Confidence 4689999983 2 12357999999999999999999999999999999999999774 8999999986431
Q ss_pred ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHH-----HHHHHHHHHc--CCchhhCccCCCCChHHHHHH
Q 044030 113 AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKK-----ERAEVTIREM--GLQDAMNTRIRRLSGGQKRRV 185 (449)
Q Consensus 113 ~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~~~~LSgGerqRv 185 (449)
.++.++|++|++.+++ .||.||+.+.... ....... ..+.++++.+ ++....++++.+|||||||||
T Consensus 74 ~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~-----~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv 147 (237)
T cd03252 74 LRRQVGVVLQENVLFN-RSIRDNIALADPG-----MSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRI 147 (237)
T ss_pred HhhcEEEEcCCchhcc-chHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHH
Confidence 1356999999988775 6999999774321 1111111 1234455555 666677889999999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChh
Q 044030 186 SISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPAT 265 (449)
Q Consensus 186 ~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~ 265 (449)
+||+||+.+|+++||||||+|||+.++..+.+.|++++ + |. |||++||++. ++ ..||++++|++|++++.|+++
T Consensus 148 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~--tiii~sH~~~-~~-~~~d~v~~l~~G~i~~~~~~~ 221 (237)
T cd03252 148 AIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-A-GR--TVIIIAHRLS-TV-KNADRIIVMEKGRIVEQGSHD 221 (237)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C-CC--EEEEEeCCHH-HH-HhCCEEEEEECCEEEEEcCHH
Confidence 99999999999999999999999999999999999996 4 55 9999999974 56 569999999999999999987
Q ss_pred hHH
Q 044030 266 AAN 268 (449)
Q Consensus 266 ~~~ 268 (449)
++.
T Consensus 222 ~~~ 224 (237)
T cd03252 222 ELL 224 (237)
T ss_pred HHH
Confidence 654
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-43 Score=382.63 Aligned_cols=222 Identities=23% Similarity=0.309 Sum_probs=189.7
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec-----
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKK----- 110 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~----- 110 (449)
.+|+++||++.| .. ..+...+|+||||++++||++||+||||||||||+++|+|+++|. +|+|.++|...
T Consensus 11 ~~l~v~~l~~~y-~~-~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~---~G~i~~~g~~~~~~~~ 85 (623)
T PRK10261 11 DVLAVENLNIAF-MQ-EQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQA---GGLVQCDKMLLRRRSR 85 (623)
T ss_pred ceEEEeceEEEe-cC-CCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CeEEEECCEEeccccc
Confidence 369999999983 21 112357999999999999999999999999999999999999774 89999988632
Q ss_pred --------c------cccCcEEEEcCCC--CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc---hhhC
Q 044030 111 --------A------LAYGTSAYVTQDD--TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ---DAMN 171 (449)
Q Consensus 111 --------~------~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~---~~~~ 171 (449)
. ...+.+|||+|++ .+++.+||.||+.++..... +.+..+.++++.++++.+||. +.++
T Consensus 86 ~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~ 163 (623)
T PRK10261 86 QVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQ--GASREEAMVEAKRMLDQVRIPEAQTILS 163 (623)
T ss_pred cccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChhhHHh
Confidence 0 0123699999997 67889999999999865421 234455567889999999995 4679
Q ss_pred ccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEE
Q 044030 172 TRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLC 251 (449)
Q Consensus 172 ~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~ 251 (449)
+++.+|||||||||+||+||+.+|++|||||||+|||+.++..++++|++++++.|. |||++|||+ ..+.++||+|+
T Consensus 164 ~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~--tvi~itHdl-~~~~~~adri~ 240 (623)
T PRK10261 164 RYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSM--GVIFITHDM-GVVAEIADRVL 240 (623)
T ss_pred CCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCC--EEEEEcCCH-HHHHHhCCEEE
Confidence 999999999999999999999999999999999999999999999999999865565 999999996 57889999999
Q ss_pred EeeCCeEEEecChhhH
Q 044030 252 LLSAGQTVYFGPATAA 267 (449)
Q Consensus 252 ~l~~G~iv~~g~~~~~ 267 (449)
+|++|+++..|+++++
T Consensus 241 vl~~G~i~~~g~~~~~ 256 (623)
T PRK10261 241 VMYQGEAVETGSVEQI 256 (623)
T ss_pred EeeCCeecccCCHHHh
Confidence 9999999999988765
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-43 Score=380.71 Aligned_cols=224 Identities=24% Similarity=0.338 Sum_probs=190.7
Q ss_pred eeEEEEeeEEEEeecCc------ccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 044030 36 VFLTWKDLTVTIVSNGK------KGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHK 109 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~------~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~ 109 (449)
..|+++||++.| .... .+.+.+|+||||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|.+
T Consensus 312 ~~L~~~~l~~~y-~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~---~G~I~~~g~~ 387 (623)
T PRK10261 312 PILQVRNLVTRF-PLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQ---GGEIIFNGQR 387 (623)
T ss_pred ceEEEeeeEEEE-cCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CcEEEECCEE
Confidence 469999999983 2100 01246999999999999999999999999999999999999774 8999999986
Q ss_pred ccc--------ccCcEEEEcCCC--CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccCCCCC
Q 044030 110 KAL--------AYGTSAYVTQDD--TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRIRRLS 178 (449)
Q Consensus 110 ~~~--------~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LS 178 (449)
+.. .++.++||+|++ .+++.+||.|++.+....+. .....+.++++.++++.+||. +..++++++||
T Consensus 388 i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LS 465 (623)
T PRK10261 388 IDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWRYPHEFS 465 (623)
T ss_pred CCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCC
Confidence 521 134699999997 58899999999988654321 112334556788999999996 67899999999
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeE
Q 044030 179 GGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQT 258 (449)
Q Consensus 179 gGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~i 258 (449)
|||||||+||+||+.+|++|||||||+|||+.++..++++|++++++.|. |||++|||+ ..+..+||+|++|++|++
T Consensus 466 gGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~--tvi~isHdl-~~v~~~~dri~vl~~G~i 542 (623)
T PRK10261 466 GGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGI--AYLFISHDM-AVVERISHRVAVMYLGQI 542 (623)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC--EEEEEeCCH-HHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999866565 999999996 578899999999999999
Q ss_pred EEecChhhHH
Q 044030 259 VYFGPATAAN 268 (449)
Q Consensus 259 v~~g~~~~~~ 268 (449)
++.|+++++.
T Consensus 543 v~~g~~~~i~ 552 (623)
T PRK10261 543 VEIGPRRAVF 552 (623)
T ss_pred EEecCHHHHh
Confidence 9999988763
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-43 Score=343.13 Aligned_cols=218 Identities=22% Similarity=0.318 Sum_probs=182.6
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeccc
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSD--TRQTGKILINGHKKAL 112 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~--~~~~G~I~~~g~~~~~ 112 (449)
...|+++||++.| +++.+|+|+||++++||+++|+||||||||||+++|+|++++. .+.+|+|.++|++...
T Consensus 18 ~~~l~~~nl~~~~------~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~ 91 (274)
T PRK14265 18 HSVFEVEGVKVFY------GGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYD 91 (274)
T ss_pred CceEEEeeEEEEe------CCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEeccc
Confidence 4479999999983 3457999999999999999999999999999999999997531 1248999999987521
Q ss_pred -------ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCC----chhhCccCCCCChHH
Q 044030 113 -------AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGL----QDAMNTRIRRLSGGQ 181 (449)
Q Consensus 113 -------~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL----~~~~~~~~~~LSgGe 181 (449)
..+.++|++|++.+++. ||.||+.+..... ... ...++.+.+.++.+++ .+..++++..|||||
T Consensus 92 ~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq 166 (274)
T PRK14265 92 SQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRAN---GYK-GNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQ 166 (274)
T ss_pred ccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhc---Cch-HHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHH
Confidence 13569999999988875 9999998865432 111 1223446677888876 356788999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEee-------
Q 044030 182 KRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLS------- 254 (449)
Q Consensus 182 rqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~------- 254 (449)
||||+||+||+.+|++|||||||+|||+.++..+.+.|++++ + +. |||++||++ .++.++||++++|+
T Consensus 167 ~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~-~~--tiii~sH~~-~~~~~~~d~i~~l~~~~~~~~ 241 (274)
T PRK14265 167 QQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELK-E-QY--TIIMVTHNM-QQASRVADWTAFFNTEIDEYG 241 (274)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CC--EEEEEeCCH-HHHHHhCCEEEEEeccccccc
Confidence 999999999999999999999999999999999999999997 3 34 999999997 57889999999998
Q ss_pred --CCeEEEecChhhHH
Q 044030 255 --AGQTVYFGPATAAN 268 (449)
Q Consensus 255 --~G~iv~~g~~~~~~ 268 (449)
+|++++.|+++++.
T Consensus 242 ~~~G~~~~~g~~~~~~ 257 (274)
T PRK14265 242 KRRGKLVEFSPTEQMF 257 (274)
T ss_pred ccCceEEEeCCHHHHH
Confidence 89999999998763
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-43 Score=336.10 Aligned_cols=209 Identities=24% Similarity=0.361 Sum_probs=175.8
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
..|+++||++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.+...
T Consensus 6 ~~i~~~~l~~~~------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~ 76 (225)
T PRK10247 6 PLLQLQNVGYLA------GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDISTLKP 76 (225)
T ss_pred ceEEEeccEEee------CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCeEEECCEEcCcCCH
Confidence 368999999983 3457999999999999999999999999999999999998774 8999999986531
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccCCCCChHHHHHHHHHH
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSGGQKRRVSISI 189 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGerqRv~ia~ 189 (449)
..+.++|++|++.+++. |++||+.+....+. . ...++++.++++.+++. ...++++..|||||+|||+||+
T Consensus 77 ~~~~~~i~~~~q~~~l~~~-tv~enl~~~~~~~~---~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lar 150 (225)
T PRK10247 77 EIYRQQVSYCAQTPTLFGD-TVYDNLIFPWQIRN---Q--QPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIR 150 (225)
T ss_pred HHHHhccEEEecccccccc-cHHHHHHhHHhhcC---C--ChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHH
Confidence 12468999999988875 99999988654321 1 11234577899999996 5789999999999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEee-CCeEEEecC
Q 044030 190 EILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLS-AGQTVYFGP 263 (449)
Q Consensus 190 aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~-~G~iv~~g~ 263 (449)
||+.+|++++|||||+|||+.++..+.+.|++++++.|. |||++||++. ++ ..||++++|+ ++..+.+|.
T Consensus 151 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~--tvii~sh~~~-~~-~~~d~i~~l~~~~~~~~~~~ 221 (225)
T PRK10247 151 NLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNI--AVLWVTHDKD-EI-NHADKVITLQPHAGEMQEAR 221 (225)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC--EEEEEECChH-HH-HhCCEEEEEecccchHhhhh
Confidence 999999999999999999999999999999999865555 9999999974 56 4699999995 555555553
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=337.36 Aligned_cols=218 Identities=25% Similarity=0.294 Sum_probs=181.1
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEeccc--
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRL--GSDTRQTGKILINGHKKAL-- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~--~~~~~~~G~I~~~g~~~~~-- 112 (449)
.|+++||++.| +++.+|+||||++++||++||+||||||||||+++|+|+. +| .+|+|.++|.+...
T Consensus 7 ~l~~~~l~~~~------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~---~~G~i~~~g~~~~~~~ 77 (252)
T CHL00131 7 ILEIKNLHASV------NENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKI---LEGDILFKGESILDLE 77 (252)
T ss_pred eEEEEeEEEEe------CCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcC---CCceEEECCEEcccCC
Confidence 68999999983 2356999999999999999999999999999999999973 34 58999999987532
Q ss_pred --c-cC-cEEEEcCCCCCCCCCCHHHHHHHHHhccCC----CCCCHHHHHHHHHHHHHHcCCc-hhhCccCC-CCChHHH
Q 044030 113 --A-YG-TSAYVTQDDTLITTLTVKEAVYYSAQLQLP----DTMPKSDKKERAEVTIREMGLQ-DAMNTRIR-RLSGGQK 182 (449)
Q Consensus 113 --~-~~-~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~----~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~-~LSgGer 182 (449)
. .+ .++|++|++.+++.+|+.+++.+....... ......+..+++.++++.+|+. ...++.+. .||||||
T Consensus 78 ~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~ 157 (252)
T CHL00131 78 PEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEK 157 (252)
T ss_pred hhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHH
Confidence 1 12 478999999999999999999875432110 0011223345678899999997 57788887 5999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhh-cCeEEEeeCCeEEEe
Q 044030 183 RRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQL-FHNLCLLSAGQTVYF 261 (449)
Q Consensus 183 qRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~-~D~v~~l~~G~iv~~ 261 (449)
|||+||+||+.+|+++||||||+|||+.++..+.+.|+++++ .|. |||++||++ ..+... ||++++|++|++++.
T Consensus 158 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~--tii~~tH~~-~~~~~~~~d~i~~l~~G~i~~~ 233 (252)
T CHL00131 158 KRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMT-SEN--SIILITHYQ-RLLDYIKPDYVHVMQNGKIIKT 233 (252)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCC--EEEEEecCH-HHHHhhhCCEEEEEeCCEEEEe
Confidence 999999999999999999999999999999999999999984 454 999999996 456666 899999999999999
Q ss_pred cChhhH
Q 044030 262 GPATAA 267 (449)
Q Consensus 262 g~~~~~ 267 (449)
|+++.+
T Consensus 234 ~~~~~~ 239 (252)
T CHL00131 234 GDAELA 239 (252)
T ss_pred cChhhh
Confidence 988743
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-43 Score=374.22 Aligned_cols=218 Identities=24% Similarity=0.314 Sum_probs=186.3
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECC--------
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRL--GSDTRQTGKILING-------- 107 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~--~~~~~~~G~I~~~g-------- 107 (449)
|+++|+++.| +++.+|+|+||++++||+++|+||||||||||||+|+|++ +| .+|+|.++|
T Consensus 1 l~~~~l~~~~------~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p---~~G~i~~~~~~~~~~~~ 71 (520)
T TIGR03269 1 IEVKNLTKKF------DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEP---TSGRIIYHVALCEKCGY 71 (520)
T ss_pred CEEEEEEEEE------CCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCC---CceEEEEeccccccccc
Confidence 4689999983 3467999999999999999999999999999999999996 45 489999972
Q ss_pred ---------------Eec--------c-------cccCcEEEEcCC-CCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHH
Q 044030 108 ---------------HKK--------A-------LAYGTSAYVTQD-DTLITTLTVKEAVYYSAQLQLPDTMPKSDKKER 156 (449)
Q Consensus 108 ---------------~~~--------~-------~~~~~i~yv~Q~-~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~ 156 (449)
.+. . ..++.++|++|+ +.+++.+||+||+.+..... ..+..+.+++
T Consensus 72 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~ 148 (520)
T TIGR03269 72 VERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI---GYEGKEAVGR 148 (520)
T ss_pred cccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc---CCCHHHHHHH
Confidence 111 0 012458999997 67888899999999875432 2334445677
Q ss_pred HHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEe
Q 044030 157 AEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASI 236 (449)
Q Consensus 157 v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~t 236 (449)
+.++++.+||++..++++.+|||||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++.|. |||++|
T Consensus 149 ~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~--tviivt 226 (520)
T TIGR03269 149 AVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGI--SMVLTS 226 (520)
T ss_pred HHHHHHHcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCc--EEEEEe
Confidence 899999999999999999999999999999999999999999999999999999999999999999765555 999999
Q ss_pred cCCcHHHHhhcCeEEEeeCCeEEEecChhhHHHH
Q 044030 237 HQPSSEVFQLFHNLCLLSAGQTVYFGPATAANEF 270 (449)
Q Consensus 237 H~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~~~ 270 (449)
||+ ..+.++||++++|++|++++.|++++..+.
T Consensus 227 Hd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 259 (520)
T TIGR03269 227 HWP-EVIEDLSDKAIWLENGEIKEEGTPDEVVAV 259 (520)
T ss_pred CCH-HHHHHhcCEEEEEeCCEEeeecCHHHHHHH
Confidence 996 568889999999999999999998776554
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-44 Score=321.73 Aligned_cols=216 Identities=28% Similarity=0.408 Sum_probs=192.5
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.|+++|+.+.| |...+|++||++.++|+++.|||.|||||||+|+||.-+..|. .|.|.+||+.+..
T Consensus 6 ~l~v~dlHK~~------G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~---~G~I~v~geei~~k~~~ 76 (256)
T COG4598 6 ALEVEDLHKRY------GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---AGSIRVNGEEIRLKRDK 76 (256)
T ss_pred ceehhHHHhhc------ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCC---CceEEECCeEEEeeeCC
Confidence 57889998873 7788999999999999999999999999999999999988774 8999999975311
Q ss_pred -------c-------cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCC
Q 044030 113 -------A-------YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLS 178 (449)
Q Consensus 113 -------~-------~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LS 178 (449)
. +.+.++|||+.++++.|||.||+.-+..--+ +.++.+..++++.+|..+|+.+..+.++..||
T Consensus 77 ~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVL--g~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LS 154 (256)
T COG4598 77 DGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVL--GVSKAEAIERAEKYLAKVGIAEKADAYPAHLS 154 (256)
T ss_pred CCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhh--cCCHHHHHHHHHHHHHHhCchhhhhcCccccC
Confidence 0 1246999999999999999999976532211 45778888899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeE
Q 044030 179 GGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQT 258 (449)
Q Consensus 179 gGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~i 258 (449)
|||+||++|||||+.+|+++++|||||+|||...-++++.++++|++ | +|.+++||.+ ..+.+...+|++|++|.+
T Consensus 155 GGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeE-g--rTMv~VTHEM-~FAR~Vss~v~fLh~G~i 230 (256)
T COG4598 155 GGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEE-G--RTMVVVTHEM-GFARDVSSHVIFLHQGKI 230 (256)
T ss_pred chHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHh-C--CeEEEEeeeh-hHHHhhhhheEEeeccee
Confidence 99999999999999999999999999999999999999999999965 4 4999999996 578889999999999999
Q ss_pred EEecChhhH
Q 044030 259 VYFGPATAA 267 (449)
Q Consensus 259 v~~g~~~~~ 267 (449)
-.+|+|+++
T Consensus 231 EE~G~P~qv 239 (256)
T COG4598 231 EEEGPPEQV 239 (256)
T ss_pred cccCChHHH
Confidence 999999876
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=336.94 Aligned_cols=218 Identities=22% Similarity=0.324 Sum_probs=183.8
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeccc-
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLG--SDTRQTGKILINGHKKAL- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~--~~~~~~G~I~~~g~~~~~- 112 (449)
+.++++||++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+.. |..+.+|+|.++|.++..
T Consensus 2 ~~l~~~~v~~~~------~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~ 75 (250)
T PRK14266 2 YRIEVENLNTYF------DDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDP 75 (250)
T ss_pred cEEEEEeEEEEe------CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccc
Confidence 358899999983 34579999999999999999999999999999999999864 211258999999987531
Q ss_pred ------ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc----hhhCccCCCCChHHH
Q 044030 113 ------AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ----DAMNTRIRRLSGGQK 182 (449)
Q Consensus 113 ------~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSgGer 182 (449)
..+.++|++|++.+++. |+.||+.+...... .......++++.++++.+|+. +..++.+..||||||
T Consensus 76 ~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~ 152 (250)
T PRK14266 76 AVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHG--EDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQ 152 (250)
T ss_pred cccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcC--CCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHH
Confidence 13569999999988885 99999987653321 112233456788899999874 456888999999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 183 RRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 183 qRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
||++||+||+.+|++++|||||+|||+.++..+.+.|++++ + +. |||++||++ .++...||++++|++|++++.|
T Consensus 153 qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~-~~--tiii~sh~~-~~~~~~~~~i~~l~~G~i~~~g 227 (250)
T PRK14266 153 QRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLK-E-DY--TIVIVTHNM-QQATRVSKYTSFFLNGEIIESG 227 (250)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CC--eEEEEECCH-HHHHhhcCEEEEEECCeEEEeC
Confidence 99999999999999999999999999999999999999996 3 44 999999996 5789999999999999999999
Q ss_pred ChhhH
Q 044030 263 PATAA 267 (449)
Q Consensus 263 ~~~~~ 267 (449)
+++++
T Consensus 228 ~~~~~ 232 (250)
T PRK14266 228 LTDQI 232 (250)
T ss_pred CHHHH
Confidence 98765
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-43 Score=341.35 Aligned_cols=216 Identities=24% Similarity=0.330 Sum_probs=181.4
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeccc--
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSD--TRQTGKILINGHKKAL-- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~--~~~~G~I~~~g~~~~~-- 112 (449)
.|+++||++.| +.+.+|+|+||+|++||+++|+||||||||||+++|+|+.++. .+.+|+|.++|.+...
T Consensus 10 ~l~i~~v~~~~------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 83 (264)
T PRK14243 10 VLRTENLNVYY------GSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPD 83 (264)
T ss_pred EEEEeeeEEEE------CCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccc
Confidence 68999999983 3457999999999999999999999999999999999987531 1258999999986521
Q ss_pred -----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc----hhhCccCCCCChHHHH
Q 044030 113 -----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ----DAMNTRIRRLSGGQKR 183 (449)
Q Consensus 113 -----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSgGerq 183 (449)
..+.++|++|++.+++. |+.||+.+..... ... ....+++.++++.+++. +..++.+.+|||||||
T Consensus 84 ~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~q 158 (264)
T PRK14243 84 VDPVEVRRRIGMVFQKPNPFPK-SIYDNIAYGARIN---GYK-GDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQ 158 (264)
T ss_pred cChHHHhhhEEEEccCCccccc-cHHHHHHhhhhhc---Ccc-hHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHH
Confidence 13469999999988874 9999998875432 111 22335567778888873 4578889999999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEee---------
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLS--------- 254 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~--------- 254 (449)
|++||+||+.+|++|||||||+|||+.++..+.+.|+++++ +. |||++||++ +++.++||++++|+
T Consensus 159 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~--tvi~vtH~~-~~~~~~~d~v~~l~~~~~~~~~~ 233 (264)
T PRK14243 159 RLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE--QY--TIIIVTHNM-QQAARVSDMTAFFNVELTEGGGR 233 (264)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CC--EEEEEecCH-HHHHHhCCEEEEEeccccccccc
Confidence 99999999999999999999999999999999999999974 34 999999996 57999999999998
Q ss_pred CCeEEEecChhhHH
Q 044030 255 AGQTVYFGPATAAN 268 (449)
Q Consensus 255 ~G~iv~~g~~~~~~ 268 (449)
+|++++.|+++++.
T Consensus 234 ~g~i~~~~~~~~~~ 247 (264)
T PRK14243 234 YGYLVEFDRTEKIF 247 (264)
T ss_pred CceEEEeCCHHHHH
Confidence 89999999987763
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-43 Score=372.51 Aligned_cols=218 Identities=25% Similarity=0.416 Sum_probs=185.7
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
|+++||++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|. +.+|+|.++|++...
T Consensus 2 l~i~~l~~~~------~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~-~~~G~i~~~g~~~~~~~~~~ 74 (500)
T TIGR02633 2 LEMKGIVKTF------GGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHG-TWDGEIYWSGSPLKASNIRD 74 (500)
T ss_pred EEEEeEEEEe------CCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHH
Confidence 6899999983 3457999999999999999999999999999999999998752 248999999987532
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCC-CCCHHHHHHHHHHHHHHcCCchhh-CccCCCCChHHHHHHHHHH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPD-TMPKSDKKERAEVTIREMGLQDAM-NTRIRRLSGGQKRRVSISI 189 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~-~~~~~~LSgGerqRv~ia~ 189 (449)
..+.++||+|++.+++.+||.||+.++....... ....++..+++.++++.+|+.+.. ++++++|||||||||+||+
T Consensus 75 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~ 154 (500)
T TIGR02633 75 TERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAK 154 (500)
T ss_pred HHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHH
Confidence 1246999999999999999999998865332110 122334456788999999998765 6779999999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhh
Q 044030 190 EILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATA 266 (449)
Q Consensus 190 aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~ 266 (449)
||+.+|++|||||||+|||+.++..+.+.|+++++ .|. |||++||++ .++..+||++++|++|++++.|++++
T Consensus 155 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~--tviiitHd~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (500)
T TIGR02633 155 ALNKQARLLILDEPSSSLTEKETEILLDIIRDLKA-HGV--ACVYISHKL-NEVKAVCDTICVIRDGQHVATKDMST 227 (500)
T ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCC--EEEEEeCcH-HHHHHhCCEEEEEeCCeEeeecCccc
Confidence 99999999999999999999999999999999974 455 999999996 57889999999999999999988754
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=339.58 Aligned_cols=212 Identities=29% Similarity=0.439 Sum_probs=175.1
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
++++|+++.| . + .++.+|+|+||++++||+++|+||||||||||+++|+|+++| .+|+|.++|.+...
T Consensus 1 i~~~~l~~~~-~-~--~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~ 73 (234)
T cd03251 1 VEFKNVTFRY-P-G--DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDV---DSGRILIDGHDVRDYTLAS 73 (234)
T ss_pred CEEEEEEEEe-C-C--CCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccC---CCCEEEECCEEhhhCCHHH
Confidence 4689999983 1 1 123699999999999999999999999999999999999977 48999999986431
Q ss_pred ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHH-----HHHHHHHHHc--CCchhhCccCCCCChHHHHHH
Q 044030 113 AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKK-----ERAEVTIREM--GLQDAMNTRIRRLSGGQKRRV 185 (449)
Q Consensus 113 ~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~~~~LSgGerqRv 185 (449)
..+.++|++|++.+++ .||+||+.+.... ....... ..+.++++.+ ++.+..++++..||||||||+
T Consensus 74 ~~~~i~~~~q~~~~~~-~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv 147 (234)
T cd03251 74 LRRQIGLVSQDVFLFN-DTVAENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRI 147 (234)
T ss_pred HHhhEEEeCCCCeecc-ccHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHH
Confidence 1346999999998886 5999999875321 1111111 1245666666 677778889999999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChh
Q 044030 186 SISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPAT 265 (449)
Q Consensus 186 ~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~ 265 (449)
+||+||+.+|++++|||||+|||+.++..+.+.|++++ + +. |||++||++. ++.. ||++++|++|+++..|+++
T Consensus 148 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~--tii~~sh~~~-~~~~-~d~v~~l~~G~i~~~~~~~ 221 (234)
T cd03251 148 AIARALLKDPPILILDEATSALDTESERLVQAALERLM-K-NR--TTFVIAHRLS-TIEN-ADRIVVLEDGKIVERGTHE 221 (234)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CC--EEEEEecCHH-HHhh-CCEEEEecCCeEeeeCCHH
Confidence 99999999999999999999999999999999999996 3 44 9999999974 5654 9999999999999999887
Q ss_pred hHH
Q 044030 266 AAN 268 (449)
Q Consensus 266 ~~~ 268 (449)
++.
T Consensus 222 ~~~ 224 (234)
T cd03251 222 ELL 224 (234)
T ss_pred HHH
Confidence 654
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-43 Score=372.32 Aligned_cols=215 Identities=22% Similarity=0.339 Sum_probs=184.0
Q ss_pred EEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc------c
Q 044030 40 WKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL------A 113 (449)
Q Consensus 40 ~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~------~ 113 (449)
++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|++... .
T Consensus 1 ~~nl~~~~------~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~ 71 (491)
T PRK10982 1 MSNISKSF------PGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD---SGSILFQGKEIDFKSSKEAL 71 (491)
T ss_pred CCceEEEe------CCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCEECCCCCHHHHH
Confidence 36788872 3467999999999999999999999999999999999999774 8999999987532 1
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh
Q 044030 114 YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT 193 (449)
Q Consensus 114 ~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~ 193 (449)
.+.++|++|++.+++.+||.||+.++.........+..+..++++++++.+|+.+..++++.+|||||||||+||+||+.
T Consensus 72 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~ 151 (491)
T PRK10982 72 ENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSY 151 (491)
T ss_pred hCCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHh
Confidence 24699999999999999999999876421111011233445678899999999988999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
+|++|||||||+|||+.++..+.+.|+++++ .|. |||++||++ +++..+||++++|++|+++..|++++.
T Consensus 152 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~--tvii~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 152 NAKIVIMDEPTSSLTEKEVNHLFTIIRKLKE-RGC--GIVYISHKM-EEIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCC--EEEEEecCH-HHHHHhCCEEEEEECCEEEeecChhhC
Confidence 9999999999999999999999999999974 455 999999996 578899999999999999999987653
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-43 Score=371.76 Aligned_cols=215 Identities=25% Similarity=0.394 Sum_probs=185.1
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.|+++||++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~ 74 (501)
T PRK11288 4 YLSFDGIGKTF------PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD---AGSILIDGQEMRFASTT 74 (501)
T ss_pred eEEEeeeEEEE------CCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHH
Confidence 58999999983 3457999999999999999999999999999999999998774 8999999987531
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHH
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIE 190 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~a 190 (449)
.++.++|++|++.+++.+||.||+.++............+.++++.++++.+||.+..++++.+|||||||||+||+|
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lara 154 (501)
T PRK11288 75 AALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKA 154 (501)
T ss_pred HHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHH
Confidence 135699999999999999999999886421110112234445678899999999988899999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecCh
Q 044030 191 ILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264 (449)
Q Consensus 191 L~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~ 264 (449)
|+.+|++|||||||+|||+.++..+.+.|+++++ .|. |||++||++ .++..+||++++|++|+++..++.
T Consensus 155 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~--tiiiitHd~-~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 155 LARNARVIAFDEPTSSLSAREIEQLFRVIRELRA-EGR--VILYVSHRM-EEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-CCC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEeecCc
Confidence 9999999999999999999999999999999975 455 999999996 578899999999999999877653
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-43 Score=339.66 Aligned_cols=198 Identities=26% Similarity=0.407 Sum_probs=173.0
Q ss_pred eeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----ccCcEEEEcCCCCCCCCCCH
Q 044030 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-----AYGTSAYVTQDDTLITTLTV 132 (449)
Q Consensus 58 iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-----~~~~i~yv~Q~~~l~~~lTv 132 (449)
+|+|+||++++||+++|+||||||||||+++|+|+.++ +|+|.++|++... ..+.++|++|++.+++.+|+
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~----~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv 86 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG----SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPV 86 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC----CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccH
Confidence 79999999999999999999999999999999998742 7999999987532 12458999999888888999
Q ss_pred HHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh-------CCCEEEEeCCCC
Q 044030 133 KEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT-------RPKLLFLDEPTS 205 (449)
Q Consensus 133 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~-------~P~llllDEPts 205 (449)
.||+.+.... .....+..++++++++.+|+.+..++++..||||||||++||+||+. +|+++||||||+
T Consensus 87 ~~nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~ 162 (248)
T PRK03695 87 FQYLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMN 162 (248)
T ss_pred HHHHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcc
Confidence 9999876321 12233345678899999999999999999999999999999999998 679999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 206 GLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 206 gLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
|||+.++..+.+.|++++++ |. |||++||++ .++..+||++++|++|+++..|+++++
T Consensus 163 ~LD~~~~~~l~~~L~~~~~~-~~--tvi~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 220 (248)
T PRK03695 163 SLDVAQQAALDRLLSELCQQ-GI--AVVMSSHDL-NHTLRHADRVWLLKQGKLLASGRRDEV 220 (248)
T ss_pred cCCHHHHHHHHHHHHHHHhC-CC--EEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999743 55 999999996 478899999999999999999987654
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-43 Score=330.94 Aligned_cols=204 Identities=25% Similarity=0.318 Sum_probs=177.0
Q ss_pred CCCeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc
Q 044030 33 DDGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL 112 (449)
Q Consensus 33 ~~~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~ 112 (449)
..+..|+++|+++. + +++.+++|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|++...
T Consensus 7 ~~~~~l~~~~l~~~-~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~i~~ 77 (214)
T PRK13543 7 TAPPLLAAHALAFS-R-----NEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVE---SGQIQIDGKTATR 77 (214)
T ss_pred CCcceEEEeeEEEe-c-----CCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CeeEEECCEEccc
Confidence 34457999999998 2 3457999999999999999999999999999999999999774 8999999987542
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHH
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIE 190 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~a 190 (449)
..+.++|++|++.+++.+|+.||+.+....+ .. ..++.+.++++.++|.+..++++..||||||||++||++
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~---~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lara 151 (214)
T PRK13543 78 GDRSRFMAYLGHLPGLKADLSTLENLHFLCGLH---GR---RAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARL 151 (214)
T ss_pred hhhhhceEEeecCcccccCCcHHHHHHHHHHhc---CC---cHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHH
Confidence 1245899999999999999999998875432 11 123456788999999988999999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeC
Q 044030 191 ILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSA 255 (449)
Q Consensus 191 L~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~ 255 (449)
++.+|++++|||||+|||+.++..+.+.|++++++ |. |||++||++ .++.++||++++++.
T Consensus 152 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~--tiii~sH~~-~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 152 WLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRG-GG--AALVTTHGA-YAAPPVRTRMLTLEA 212 (214)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CC--EEEEEecCh-hhhhhhcceEEEEee
Confidence 99999999999999999999999999999999754 54 999999996 579999999999864
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-43 Score=342.41 Aligned_cols=218 Identities=26% Similarity=0.382 Sum_probs=180.3
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc--c
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA--Y 114 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~--~ 114 (449)
.|+++||++.| . +++.+|+|+||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|.+.... .
T Consensus 6 ~l~~~~l~~~~-~----~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~ 77 (272)
T PRK15056 6 GIVVNDVTVTW-R----NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLA---SGKISILGQPTRQALQK 77 (272)
T ss_pred eEEEEeEEEEe-c----CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEhHHhhcc
Confidence 58999999983 1 2357999999999999999999999999999999999998774 89999999875321 2
Q ss_pred CcEEEEcCCCCCC--CCCCHHHHHHHHHhccCC-CCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHH
Q 044030 115 GTSAYVTQDDTLI--TTLTVKEAVYYSAQLQLP-DTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEI 191 (449)
Q Consensus 115 ~~i~yv~Q~~~l~--~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL 191 (449)
+.++|++|++.+. ...++++++.++...... ........++++.++++.+||.+..++++..||||||||++||+||
T Consensus 78 ~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL 157 (272)
T PRK15056 78 NLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAI 157 (272)
T ss_pred ceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHH
Confidence 3599999997652 234788988654211000 0111223345678899999999999999999999999999999999
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 192 LTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 192 ~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
+.+|++++|||||+|||+.++..+.+.|++++++ |. |||++||++ +++.++||+++++ +|++++.|+++++
T Consensus 158 ~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~-g~--tviivsH~~-~~~~~~~d~v~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 158 AQQGQVILLDEPFTGVDVKTEARIISLLRELRDE-GK--TMLVSTHNL-GSVTEFCDYTVMV-KGTVLASGPTETT 228 (272)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CC--EEEEEeCCH-HHHHHhCCEEEEE-CCEEEeecCHHhc
Confidence 9999999999999999999999999999999754 55 999999996 5788999999877 8999999988764
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=337.87 Aligned_cols=218 Identities=24% Similarity=0.335 Sum_probs=183.8
Q ss_pred CCeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEecc
Q 044030 34 DGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDT--RQTGKILINGHKKA 111 (449)
Q Consensus 34 ~~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~--~~~G~I~~~g~~~~ 111 (449)
.+..+.++++++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|.. +.+|+|+++|.+..
T Consensus 5 ~~~~~~~~~~~~~~------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~ 78 (261)
T PRK14263 5 APIVMDCKLDKIFY------GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVY 78 (261)
T ss_pred CCceEEEEeEEEEe------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEecc
Confidence 34568899999872 45679999999999999999999999999999999999987521 25899999998752
Q ss_pred c-------ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch----hhCccCCCCChH
Q 044030 112 L-------AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD----AMNTRIRRLSGG 180 (449)
Q Consensus 112 ~-------~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~~~~LSgG 180 (449)
. ..+.++|++|++.++ .+|+.||+.++..... . ..+..+++.++++.+++.+ ..+++++.||||
T Consensus 79 ~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G 153 (261)
T PRK14263 79 GKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGG 153 (261)
T ss_pred ccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHH
Confidence 1 134699999999887 5899999998765321 1 1233457888999999854 446788999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEee------
Q 044030 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLS------ 254 (449)
Q Consensus 181 erqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~------ 254 (449)
|+||++|||||+.+|++|||||||+|||+.++..+.+.|++++ + +. |||++||++ .++.++||++++|+
T Consensus 154 ~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~-~~--tii~isH~~-~~i~~~~d~v~~l~~~~~~~ 228 (261)
T PRK14263 154 QQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-K-DY--TIALVTHNM-QQAIRVADTTAFFSVDISQG 228 (261)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CC--eEEEEeCCH-HHHHHhCCEEEEEecccccc
Confidence 9999999999999999999999999999999999999999996 3 44 999999997 47889999999996
Q ss_pred --CCeEEEecChhhH
Q 044030 255 --AGQTVYFGPATAA 267 (449)
Q Consensus 255 --~G~iv~~g~~~~~ 267 (449)
+|+++..|+++++
T Consensus 229 ~~~G~i~~~g~~~~~ 243 (261)
T PRK14263 229 TRTGYLVEMGPTAQI 243 (261)
T ss_pred cCCceEEEeCCHHHH
Confidence 8999999998765
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-43 Score=372.27 Aligned_cols=222 Identities=23% Similarity=0.371 Sum_probs=187.0
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEEC-CEe---cc
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILIN-GHK---KA 111 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~-g~~---~~ 111 (449)
.+|+++||++.| .....+.+.+|+|+||+|++||+++|+||||||||||+++|+|+++|. +|+|.++ |.+ ..
T Consensus 278 ~~l~~~~l~~~~-~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~~g~~~~~~~ 353 (520)
T TIGR03269 278 PIIKVRNVSKRY-ISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPT---SGEVNVRVGDEWVDMT 353 (520)
T ss_pred ceEEEeccEEEe-ccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEEecCCcccccc
Confidence 369999999983 210112357999999999999999999999999999999999999774 8999996 532 11
Q ss_pred --------cccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch-----hhCccCCCCC
Q 044030 112 --------LAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD-----AMNTRIRRLS 178 (449)
Q Consensus 112 --------~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----~~~~~~~~LS 178 (449)
...+.++|++|++.+++.+||.||+.+...+. .+....++++.++++.+||.+ ..++++.+||
T Consensus 354 ~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS 429 (520)
T TIGR03269 354 KPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKYPDELS 429 (520)
T ss_pred ccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCC
Confidence 01246999999999999999999998764321 223334467889999999974 5799999999
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeE
Q 044030 179 GGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQT 258 (449)
Q Consensus 179 gGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~i 258 (449)
|||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++.|. |||++|||+ .++.++||++++|++|++
T Consensus 430 gGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~--tvi~vsHd~-~~~~~~~d~i~~l~~G~i 506 (520)
T TIGR03269 430 EGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQ--TFIIVSHDM-DFVLDVCDRAALMRDGKI 506 (520)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCc--EEEEEeCCH-HHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999865555 999999996 578899999999999999
Q ss_pred EEecChhhHH
Q 044030 259 VYFGPATAAN 268 (449)
Q Consensus 259 v~~g~~~~~~ 268 (449)
++.|+++++.
T Consensus 507 ~~~g~~~~~~ 516 (520)
T TIGR03269 507 VKIGDPEEIV 516 (520)
T ss_pred EEECCHHHHH
Confidence 9999887654
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=338.52 Aligned_cols=216 Identities=29% Similarity=0.421 Sum_probs=182.6
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC------Eec
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING------HKK 110 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g------~~~ 110 (449)
.++++|++++| +++.+|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++| .+.
T Consensus 10 ~i~~~~~~~~~------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~---~G~v~~~G~~~~~g~~~ 80 (257)
T PRK14246 10 VFNISRLYLYI------NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIY---DSKIKVDGKVLYFGKDI 80 (257)
T ss_pred heeeeeEEEec------CCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---cCceeEcCEEEECCccc
Confidence 48999999982 4567999999999999999999999999999999999998774 65555554 433
Q ss_pred cc-----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc----hhhCccCCCCChHH
Q 044030 111 AL-----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ----DAMNTRIRRLSGGQ 181 (449)
Q Consensus 111 ~~-----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~~~~LSgGe 181 (449)
.. ..+.++|++|++.+++.+|+.||+.+...... .....+.++++.++++.+++. +..++.+..|||||
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~ 158 (257)
T PRK14246 81 FQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQ 158 (257)
T ss_pred ccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHH
Confidence 11 13469999999999999999999998754321 112334456788999999996 46788999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEe
Q 044030 182 KRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYF 261 (449)
Q Consensus 182 rqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~ 261 (449)
|||++||+||+.+|++++|||||+|||+.++..+.+.|.+++ + +. |||++||++ ..+..+||++++|++|+++..
T Consensus 159 ~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~--tiilvsh~~-~~~~~~~d~v~~l~~g~i~~~ 233 (257)
T PRK14246 159 QQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELK-N-EI--AIVIVSHNP-QQVARVADYVAFLYNGELVEW 233 (257)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-Cc--EEEEEECCH-HHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999996 3 34 999999996 578899999999999999999
Q ss_pred cChhhHH
Q 044030 262 GPATAAN 268 (449)
Q Consensus 262 g~~~~~~ 268 (449)
|++++..
T Consensus 234 g~~~~~~ 240 (257)
T PRK14246 234 GSSNEIF 240 (257)
T ss_pred CCHHHHH
Confidence 9887653
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=370.80 Aligned_cols=224 Identities=24% Similarity=0.366 Sum_probs=187.8
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeccc--
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSD--TRQTGKILINGHKKAL-- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~--~~~~G~I~~~g~~~~~-- 112 (449)
+|+++|+++.| .. ..+.+.+|+|+||++++||++||+||||||||||+|+|+|+++|. .+.+|+|.++|.+...
T Consensus 5 ~l~~~~l~~~~-~~-~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~ 82 (529)
T PRK15134 5 LLAIENLSVAF-RQ-QQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHAS 82 (529)
T ss_pred eEEEeceEEEe-cC-CCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCC
Confidence 58999999983 21 111357999999999999999999999999999999999999752 1258999999987521
Q ss_pred -------ccCcEEEEcCCCC--CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch---hhCccCCCCChH
Q 044030 113 -------AYGTSAYVTQDDT--LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD---AMNTRIRRLSGG 180 (449)
Q Consensus 113 -------~~~~i~yv~Q~~~--l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~~~~LSgG 180 (449)
..+.++|++|++. +++.+|+.+++.+...... +.+..+..++++++++.+||.+ ..++++.+||||
T Consensus 83 ~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgG 160 (529)
T PRK15134 83 EQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHR--GMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGG 160 (529)
T ss_pred HHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHH
Confidence 1146999999974 6777899999886543211 2334455677899999999975 469999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 181 erqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
|||||+||+||+.+|++|||||||+|||+.++..+++.|++++++.|. |||++||++ ..+..+||+|++|++|++++
T Consensus 161 e~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~--tvi~vtHd~-~~~~~~~dri~~l~~G~i~~ 237 (529)
T PRK15134 161 ERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNM--GLLFITHNL-SIVRKLADRVAVMQNGRCVE 237 (529)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCC--eEEEEcCcH-HHHHHhcCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999865555 999999997 57888999999999999999
Q ss_pred ecChhhH
Q 044030 261 FGPATAA 267 (449)
Q Consensus 261 ~g~~~~~ 267 (449)
.|+++++
T Consensus 238 ~g~~~~~ 244 (529)
T PRK15134 238 QNRAATL 244 (529)
T ss_pred eCCHHHH
Confidence 9988765
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-43 Score=336.57 Aligned_cols=212 Identities=26% Similarity=0.384 Sum_probs=171.9
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.|+++|+++.| . +.+.+|+|+||++++||+++|+|||||||||||++|+|+++|. +|+|.++|.+...
T Consensus 2 ~l~~~~l~~~~-~----~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~ 73 (229)
T cd03254 2 EIEFENVNFSY-D----EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQ---KGQILIDGIDIRDISRK 73 (229)
T ss_pred eEEEEEEEEec-C----CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEeHHHcCHH
Confidence 47899999983 1 2346999999999999999999999999999999999999774 8999999986531
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHH-----HHHHHHHHc--CCchhhCccCCCCChHHHHH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKE-----RAEVTIREM--GLQDAMNTRIRRLSGGQKRR 184 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~~~~~~~LSgGerqR 184 (449)
..+.++|++|++.+++. |+.||+.+.... .......+ ...++++.+ ++....++.+..||||||||
T Consensus 74 ~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~r 147 (229)
T cd03254 74 SLRSMIGVVLQDTFLFSG-TIMENIRLGRPN-----ATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQL 147 (229)
T ss_pred HHhhhEEEecCCchhhhh-HHHHHHhccCCC-----CCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHH
Confidence 13469999999988876 999999775321 11111111 123344444 55556677789999999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecCh
Q 044030 185 VSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264 (449)
Q Consensus 185 v~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~ 264 (449)
|+||+||+.+|+++||||||+|||+.++..+++.|++++ + +. |||++||++. ++ ..||++++|++|++++.|+.
T Consensus 148 v~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~--tii~~sh~~~-~~-~~~d~i~~l~~g~~~~~~~~ 221 (229)
T cd03254 148 LAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-K-GR--TSIIIAHRLS-TI-KNADKILVLDDGKIIEEGTH 221 (229)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CC--EEEEEecCHH-HH-hhCCEEEEEeCCeEEEeCCH
Confidence 999999999999999999999999999999999999986 4 44 9999999974 55 46999999999999999887
Q ss_pred hhHH
Q 044030 265 TAAN 268 (449)
Q Consensus 265 ~~~~ 268 (449)
++..
T Consensus 222 ~~~~ 225 (229)
T cd03254 222 DELL 225 (229)
T ss_pred HHHH
Confidence 6553
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-43 Score=327.83 Aligned_cols=197 Identities=27% Similarity=0.357 Sum_probs=170.4
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----c
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----A 113 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----~ 113 (449)
++++|++++| +.+.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+... .
T Consensus 2 l~~~~l~~~~------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~v~~~g~~~~~~~~~~ 72 (204)
T PRK13538 2 LEARNLACER------DERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPD---AGEVLWQGEPIRRQRDEY 72 (204)
T ss_pred eEEEEEEEEE------CCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEcccchHHh
Confidence 7899999983 3457999999999999999999999999999999999999774 8999999987532 1
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh
Q 044030 114 YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT 193 (449)
Q Consensus 114 ~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~ 193 (449)
.+.++|++|++.+++.+|+.||+.+..... .. ...++++++++.+|+.+..++++..||||||||++||+||+.
T Consensus 73 ~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~---~~---~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~ 146 (204)
T PRK13538 73 HQDLLYLGHQPGIKTELTALENLRFYQRLH---GP---GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLT 146 (204)
T ss_pred hhheEEeCCccccCcCCcHHHHHHHHHHhc---Cc---cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhc
Confidence 346999999999999999999998876432 11 224568889999999988999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEe
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLL 253 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l 253 (449)
+|++++|||||+|||+.++..+.+.|+++++ .|. |||++||++ .++....++++++
T Consensus 147 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~--tiii~sh~~-~~i~~~~~~~~~~ 202 (204)
T PRK13538 147 RAPLWILDEPFTAIDKQGVARLEALLAQHAE-QGG--MVILTTHQD-LPVASDKVRKLRL 202 (204)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCC--EEEEEecCh-hhhccCCceEEec
Confidence 9999999999999999999999999999974 454 999999997 4666655677666
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=331.50 Aligned_cols=202 Identities=25% Similarity=0.384 Sum_probs=171.6
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcE
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTS 117 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i 117 (449)
+.++|+++.| +.+.+|+|+||+|++||+++|+||||||||||+++|+|+.+|. +|+|+++|++...
T Consensus 23 l~~~~~~~~~------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~----- 88 (224)
T cd03220 23 LGILGRKGEV------GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPD---SGTVTVRGRVSSL----- 88 (224)
T ss_pred hhhhhhhhhc------CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEchh-----
Confidence 5667777652 5678999999999999999999999999999999999998774 8999999986421
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCE
Q 044030 118 AYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKL 197 (449)
Q Consensus 118 ~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~l 197 (449)
..+...+++.+||.||+.+..... .....+.++++.++++.+++.+..++++.+||||||||++||+||+.+|++
T Consensus 89 --~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l 163 (224)
T cd03220 89 --LGLGGGFNPELTGRENIYLNGRLL---GLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDI 163 (224)
T ss_pred --hcccccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 112234567789999998876532 123344455678899999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 198 LFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 198 lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
+||||||+|||+.++..+.+.|++++++ |. |||++||++ .++..+||++++|++|++++.|
T Consensus 164 lllDEP~~gLD~~~~~~~~~~l~~~~~~-~~--tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 164 LLIDEVLAVGDAAFQEKCQRRLRELLKQ-GK--TVILVSHDP-SSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHhC-CC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999754 55 999999996 5788899999999999998765
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-43 Score=338.67 Aligned_cols=214 Identities=27% Similarity=0.402 Sum_probs=172.3
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
++++|+++.| . ..+++.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 1 l~i~~l~~~~-~--~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~ 74 (238)
T cd03249 1 IEFKNVSFRY-P--SRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPT---SGEILLDGVDIRDLNLRW 74 (238)
T ss_pred CeEEEEEEec-C--CCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCC---CCEEEECCEehhhcCHHH
Confidence 4689999983 2 112356999999999999999999999999999999999998774 8999999987431
Q ss_pred ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHH-----HHHHHHHHc--CCchhhCccCCCCChHHHHHH
Q 044030 113 AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKE-----RAEVTIREM--GLQDAMNTRIRRLSGGQKRRV 185 (449)
Q Consensus 113 ~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~~~~~~~LSgGerqRv 185 (449)
..+.++|++|++.+++ .||+||+.+..... ....... .+.++++.+ ++....++.+..|||||||||
T Consensus 75 ~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv 148 (238)
T cd03249 75 LRSQIGLVSQEPVLFD-GTIAENIRYGKPDA-----TDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRI 148 (238)
T ss_pred HHhhEEEECCchhhhh-hhHHHHhhccCCCC-----CHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHH
Confidence 1246999999988876 59999998753211 1111111 123334444 556667788899999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChh
Q 044030 186 SISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPAT 265 (449)
Q Consensus 186 ~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~ 265 (449)
+||+||+.+|++++|||||+|||+.++..+.+.|++++ + |. |||++||++. ++. .||++++|++|++++.|+.+
T Consensus 149 ~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~-g~--~vi~~sh~~~-~~~-~~d~v~~l~~G~i~~~~~~~ 222 (238)
T cd03249 149 AIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-K-GR--TTIVIAHRLS-TIR-NADLIAVLQNGQVVEQGTHD 222 (238)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CC--EEEEEeCCHH-HHh-hCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999986 3 44 9999999974 565 89999999999999999877
Q ss_pred hHHH
Q 044030 266 AANE 269 (449)
Q Consensus 266 ~~~~ 269 (449)
+..+
T Consensus 223 ~~~~ 226 (238)
T cd03249 223 ELMA 226 (238)
T ss_pred HHhh
Confidence 6543
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-42 Score=334.74 Aligned_cols=216 Identities=22% Similarity=0.299 Sum_probs=184.7
Q ss_pred eeEEEEeeEEEEeecC--------------cccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCcee
Q 044030 36 VFLTWKDLTVTIVSNG--------------KKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTG 101 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~--------------~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G 101 (449)
+.++++||+++|-... +...+.+|+|+||+|++||+++|+||||||||||+++|+|+++|. +|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~---~G 79 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPT---VG 79 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ce
Confidence 5789999999852210 114467999999999999999999999999999999999999774 89
Q ss_pred EEEECCEecccccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHH
Q 044030 102 KILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQ 181 (449)
Q Consensus 102 ~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGe 181 (449)
+|.++|. +++++|+..+.+.+|+.||+.+..... +...++....++.+++.+++.+..++.+++|||||
T Consensus 80 ~I~~~g~--------~~~~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq 148 (264)
T PRK13546 80 KVDRNGE--------VSVIAISAGLSGQLTGIENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGM 148 (264)
T ss_pred EEEECCE--------EeEEecccCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHH
Confidence 9999985 357778877888899999998765432 22334445567788999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEe
Q 044030 182 KRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYF 261 (449)
Q Consensus 182 rqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~ 261 (449)
||||+||+||+.+|++|||||||+|||+.++..+++.|.++++ .|. |||++||++ .++.++||++++|++|+++..
T Consensus 149 ~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~-~g~--tiIiisH~~-~~i~~~~d~i~~l~~G~i~~~ 224 (264)
T PRK13546 149 RAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKE-QNK--TIFFVSHNL-GQVRQFCTKIAWIEGGKLKDY 224 (264)
T ss_pred HHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHH-CCC--EEEEEcCCH-HHHHHHcCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999974 455 999999996 578889999999999999999
Q ss_pred cChhhHHH
Q 044030 262 GPATAANE 269 (449)
Q Consensus 262 g~~~~~~~ 269 (449)
|+++++.+
T Consensus 225 g~~~~~~~ 232 (264)
T PRK13546 225 GELDDVLP 232 (264)
T ss_pred CCHHHHHH
Confidence 99877653
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=371.65 Aligned_cols=223 Identities=25% Similarity=0.396 Sum_probs=187.9
Q ss_pred eeEEEEeeEEEEeecCc------ccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 044030 36 VFLTWKDLTVTIVSNGK------KGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHK 109 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~------~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~ 109 (449)
..|+++|+++.| ..+. .+.+.+|+|+||+|++||+++|+||||||||||+|+|+|+++ .+|+|+++|.+
T Consensus 274 ~~l~~~~l~~~~-~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~----~~G~i~~~g~~ 348 (529)
T PRK15134 274 PLLDVEQLQVAF-PIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN----SQGEIWFDGQP 348 (529)
T ss_pred CcccccCcEEEe-ecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC----CCcEEEECCEE
Confidence 358999999983 2110 013579999999999999999999999999999999999974 38999999986
Q ss_pred ccc--------ccCcEEEEcCCC--CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccCCCCC
Q 044030 110 KAL--------AYGTSAYVTQDD--TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRIRRLS 178 (449)
Q Consensus 110 ~~~--------~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LS 178 (449)
+.. .++.++|++|++ .+++.+||.||+.++...+.. ..+..+.++++.++++.+||. +..++++.+||
T Consensus 349 i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS 427 (529)
T PRK15134 349 LHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHRYPAEFS 427 (529)
T ss_pred ccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhcCCccCC
Confidence 521 124599999997 478889999999887543211 123334456788999999997 57899999999
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeE
Q 044030 179 GGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQT 258 (449)
Q Consensus 179 gGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~i 258 (449)
|||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++.|. |||++||++ .++..+||++++|++|++
T Consensus 428 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~--tvi~vsHd~-~~~~~~~d~i~~l~~G~i 504 (529)
T PRK15134 428 GGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQL--AYLFISHDL-HVVRALCHQVIVLRQGEV 504 (529)
T ss_pred HHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCC--EEEEEeCCH-HHHHHhcCeEEEEECCEE
Confidence 99999999999999999999999999999999999999999999865555 999999996 578899999999999999
Q ss_pred EEecChhhH
Q 044030 259 VYFGPATAA 267 (449)
Q Consensus 259 v~~g~~~~~ 267 (449)
+..|+++++
T Consensus 505 ~~~~~~~~~ 513 (529)
T PRK15134 505 VEQGDCERV 513 (529)
T ss_pred EEEcCHHHH
Confidence 999988766
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=336.06 Aligned_cols=202 Identities=28% Similarity=0.449 Sum_probs=175.1
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCc
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGT 116 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~ 116 (449)
.|+++||++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|. ..
T Consensus 4 ~l~~~~l~~~~------~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~~~------~~ 68 (251)
T PRK09544 4 LVSLENVSVSF------GQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPD---EGVIKRNGK------LR 68 (251)
T ss_pred EEEEeceEEEE------CCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCc------cC
Confidence 58999999983 3457999999999999999999999999999999999999774 899999873 35
Q ss_pred EEEEcCCCCCCCCC--CHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhC
Q 044030 117 SAYVTQDDTLITTL--TVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTR 194 (449)
Q Consensus 117 i~yv~Q~~~l~~~l--Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~ 194 (449)
++|++|++.+++.+ |+.+++.+.. ... .+++.++++.+|+.+..++++..|||||||||+||+||+.+
T Consensus 69 i~~v~q~~~~~~~l~~~~~~~~~~~~------~~~----~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~ 138 (251)
T PRK09544 69 IGYVPQKLYLDTTLPLTVNRFLRLRP------GTK----KEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNR 138 (251)
T ss_pred EEEeccccccccccChhHHHHHhccc------ccc----HHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999998877653 7777764321 111 24577899999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 195 PKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 195 P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
|+++||||||+|||+.++..+++.|++++++.|. |||++||++ +++.+.||++++|+ |+++..|+++++
T Consensus 139 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~--tiiivsH~~-~~i~~~~d~i~~l~-~~i~~~g~~~~~ 207 (251)
T PRK09544 139 PQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDC--AVLMVSHDL-HLVMAKTDEVLCLN-HHICCSGTPEVV 207 (251)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCC--EEEEEecCH-HHHHHhCCEEEEEC-CceEeeCCHHHH
Confidence 9999999999999999999999999999855455 999999996 57889999999996 479999988765
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-42 Score=346.11 Aligned_cols=221 Identities=24% Similarity=0.314 Sum_probs=184.5
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeccc
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSD--TRQTGKILINGHKKAL 112 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~--~~~~G~I~~~g~~~~~ 112 (449)
...|+++|+++.| .. +.+.+|+|+||+|++||++||+||||||||||+++|+|+..+. .+.+|+|.++|.++..
T Consensus 78 ~~~i~~~nls~~y-~~---~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~ 153 (329)
T PRK14257 78 ANVFEIRNFNFWY-MN---RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRS 153 (329)
T ss_pred CceEEEEeeEEEe-cC---CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 3468999999983 21 2356999999999999999999999999999999999997531 1358999999998631
Q ss_pred -------ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHH-HHHHHHHHHHHHcCC----chhhCccCCCCChH
Q 044030 113 -------AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKS-DKKERAEVTIREMGL----QDAMNTRIRRLSGG 180 (449)
Q Consensus 113 -------~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~-~~~~~v~~~l~~lgL----~~~~~~~~~~LSgG 180 (449)
.++.++||||++.+++ .|++||+.|+.... ..... ...+.+.++++.++| ....++++.+||||
T Consensus 154 ~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgG 229 (329)
T PRK14257 154 KKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGG 229 (329)
T ss_pred cccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHH
Confidence 1357999999999886 69999999875432 12222 223456778888877 34568889999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 181 erqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
||||++|||||+.+|+||||||||+|||+.+...+.+.|+++++ ++ |||++||++ ..+.++||+|++|++|+++.
T Consensus 230 qkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~--~~--Tii~iTH~l-~~i~~~~Driivl~~G~i~e 304 (329)
T PRK14257 230 QQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK--KY--SIIIVTHSM-AQAQRISDETVFFYQGWIEE 304 (329)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999974 34 999999996 57888999999999999999
Q ss_pred ecChhhHH
Q 044030 261 FGPATAAN 268 (449)
Q Consensus 261 ~g~~~~~~ 268 (449)
.|+++++.
T Consensus 305 ~g~~~~l~ 312 (329)
T PRK14257 305 AGETKTIF 312 (329)
T ss_pred eCCHHHHh
Confidence 99998763
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=405.99 Aligned_cols=223 Identities=26% Similarity=0.409 Sum_probs=198.1
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
-.|+++||++.| . .+.+.+|+||||.|++||++||+||||||||||+|+|+|+++|+ +|+|+++|++...
T Consensus 1936 ~~L~v~nLsK~Y-~---~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~pt---sG~I~i~G~~i~~~~~ 2008 (2272)
T TIGR01257 1936 DILRLNELTKVY-S---GTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVT---SGDATVAGKSILTNIS 2008 (2272)
T ss_pred ceEEEEEEEEEE-C---CCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECcchHH
Confidence 368999999983 1 11367999999999999999999999999999999999999874 8999999987631
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEI 191 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL 191 (449)
.++.+||+||++.+++.+||+|++.+.+.++ +.+.++.+++++++++.+||.+.+|+++++|||||||||+||+||
T Consensus 2009 ~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~---g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~AL 2085 (2272)
T TIGR01257 2009 DVHQNMGYCPQFDAIDDLLTGREHLYLYARLR---GVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIAL 2085 (2272)
T ss_pred HHhhhEEEEeccccCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHH
Confidence 2356999999999999999999999877664 334445566788999999999999999999999999999999999
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHHHHH
Q 044030 192 LTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANEFF 271 (449)
Q Consensus 192 ~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~~~f 271 (449)
+.+|+++||||||+|||+.++..+++.|++++++ |+ |||++||++ +++..+||++++|++|+++..|++++++..|
T Consensus 2086 i~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~-g~--TIILtTH~m-ee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~ 2161 (2272)
T TIGR01257 2086 IGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIRE-GR--AVVLTSHSM-EECEALCTRLAIMVKGAFQCLGTIQHLKSKF 2161 (2272)
T ss_pred hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHHHh
Confidence 9999999999999999999999999999999754 55 999999996 6899999999999999999999999988766
Q ss_pred H
Q 044030 272 A 272 (449)
Q Consensus 272 ~ 272 (449)
.
T Consensus 2162 g 2162 (2272)
T TIGR01257 2162 G 2162 (2272)
T ss_pred C
Confidence 4
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-42 Score=322.97 Aligned_cols=188 Identities=53% Similarity=0.859 Sum_probs=161.6
Q ss_pred eeEEEEeeEEEEeecC-cccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEeccc
Q 044030 36 VFLTWKDLTVTIVSNG-KKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRL--GSDTRQTGKILINGHKKAL 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~-~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~--~~~~~~~G~I~~~g~~~~~ 112 (449)
..++++||++.| ... ....+.+|+|+||++++||+++|+||||||||||+++|+|++ +| .+|+|.++|++...
T Consensus 2 ~~l~~~~ls~~~-~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~---~~G~i~~~g~~~~~ 77 (194)
T cd03213 2 VTLSFRNLTVTV-KSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLG---VSGEVLINGRPLDK 77 (194)
T ss_pred cEEEEEeeEEEE-ecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---CceEEEECCEeCch
Confidence 358999999983 210 001257999999999999999999999999999999999998 66 48999999987642
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHH
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIE 190 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~a 190 (449)
..+.++|++|++.+++.+|++||+.+...+ ..||||||||++||+|
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~--------------------------------~~LS~G~~qrv~lara 125 (194)
T cd03213 78 RSFRKIIGYVPQDDILHPTLTVRETLMFAAKL--------------------------------RGLSGGERKRVSIALE 125 (194)
T ss_pred HhhhheEEEccCcccCCCCCcHHHHHHHHHHh--------------------------------ccCCHHHHHHHHHHHH
Confidence 235699999999999999999999764321 0899999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 191 ILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 191 L~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
|+.+|++++|||||+|||+.++..+.+.|++++++ |. |||++||++..++.++||++++|++|++++.|
T Consensus 126 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~-~~--tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 126 LVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADT-GR--TIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC-CC--EEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999754 55 99999999754688899999999999998764
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-44 Score=323.65 Aligned_cols=219 Identities=24% Similarity=0.377 Sum_probs=197.9
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc---
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA--- 113 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~--- 113 (449)
+++++||+++| +.+.+|+++|++|++|.+++|+|||||||||||.+++.+++.+ +|+|+++|.+....
T Consensus 1 MI~i~nv~K~y------~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d---~G~i~i~g~~~~~~~s~ 71 (252)
T COG4604 1 MITIENVSKSY------GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKD---SGEITIDGLELTSTPSK 71 (252)
T ss_pred CeeehhhhHhh------CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcccc---CceEEEeeeecccCChH
Confidence 46889999983 6789999999999999999999999999999999999999775 99999999986421
Q ss_pred --cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHH
Q 044030 114 --YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEI 191 (449)
Q Consensus 114 --~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL 191 (449)
.+.++.+-|+..+...+||+|-+.|+...+. .+...++.+..+++.++.++|++..|++..+||||||||..||+.+
T Consensus 72 ~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYS-qGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVl 150 (252)
T COG4604 72 ELAKKLSILKQENHINSRLTVRDLVGFGRFPYS-QGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVL 150 (252)
T ss_pred HHHHHHHHHHhhchhhheeEHHHHhhcCCCccc-CCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheee
Confidence 2467889999999999999999999865442 3444567788899999999999999999999999999999999999
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 192 LTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 192 ~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
+++.+.++||||.++||...+..+|+.|++++++.|+ ||+++.||.. .+..++|+|+-|++|+++..|+++++.
T Consensus 151 aQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~K--tiviVlHDIN-fAS~YsD~IVAlK~G~vv~~G~~~eii 224 (252)
T COG4604 151 AQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGK--TIVVVLHDIN-FASCYSDHIVALKNGKVVKQGSPDEII 224 (252)
T ss_pred eccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCC--eEEEEEeccc-HHHhhhhheeeecCCEEEecCCHHHhc
Confidence 9999999999999999999999999999999999877 9999999975 688899999999999999999999875
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-43 Score=331.25 Aligned_cols=202 Identities=30% Similarity=0.472 Sum_probs=169.9
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
++++|+++.| . .+.+.+|+|+||++++|++++|+||||||||||+++|+|+.+|. +|+|.++|.+...
T Consensus 3 l~~~~l~~~~-~---~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~ 75 (220)
T cd03245 3 IEFRNVSFSY-P---NQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT---SGSVLLDGTDIRQLDPAD 75 (220)
T ss_pred EEEEEEEEEc-C---CCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCeEEECCEEhHHCCHHH
Confidence 7899999983 1 11256999999999999999999999999999999999998774 8999999986521
Q ss_pred ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccC-----------CCCChHH
Q 044030 113 AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRI-----------RRLSGGQ 181 (449)
Q Consensus 113 ~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~-----------~~LSgGe 181 (449)
..+.++|++|++.+++ .||.||+.+.... .. .+.+.++++.+++.+..++.+ .+|||||
T Consensus 76 ~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~-----~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~ 145 (220)
T cd03245 76 LRRNIGYVPQDVTLFY-GTLRDNITLGAPL-----AD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQ 145 (220)
T ss_pred HHhhEEEeCCCCcccc-chHHHHhhcCCCC-----CC----HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHH
Confidence 1246999999998887 5999999764211 11 234567888889987777654 6999999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEe
Q 044030 182 KRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYF 261 (449)
Q Consensus 182 rqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~ 261 (449)
|||++||+||+.+|+++||||||+|||+.++..+++.|+++++ +. |||++||++. .+ ++||++++|++|++++.
T Consensus 146 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~--tii~~sH~~~-~~-~~~d~v~~l~~g~i~~~ 219 (220)
T cd03245 146 RQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG--DK--TLIIITHRPS-LL-DLVDRIIVMDSGRIVAD 219 (220)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC--CC--EEEEEeCCHH-HH-HhCCEEEEEeCCeEeec
Confidence 9999999999999999999999999999999999999999974 24 9999999974 44 79999999999999875
Q ss_pred c
Q 044030 262 G 262 (449)
Q Consensus 262 g 262 (449)
|
T Consensus 220 ~ 220 (220)
T cd03245 220 G 220 (220)
T ss_pred C
Confidence 4
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-42 Score=334.39 Aligned_cols=217 Identities=24% Similarity=0.350 Sum_probs=182.2
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEecc--
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDT--RQTGKILINGHKKA-- 111 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~--~~~G~I~~~g~~~~-- 111 (449)
..|+++|+++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|+.+|.. +.+|+|.++|.+..
T Consensus 15 ~~l~~~~l~~~~------~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~ 88 (265)
T PRK14252 15 QKSEVNKLNFYY------GGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNIL 88 (265)
T ss_pred ceEEEEEEEEEE------CCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccc
Confidence 458999999983 34579999999999999999999999999999999999986521 25899999987532
Q ss_pred -------cccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCH-HHHHHHHHHHHHHcCCc----hhhCccCCCCCh
Q 044030 112 -------LAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPK-SDKKERAEVTIREMGLQ----DAMNTRIRRLSG 179 (449)
Q Consensus 112 -------~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~-~~~~~~v~~~l~~lgL~----~~~~~~~~~LSg 179 (449)
...+.++|++|++.+++. |++||+.++.... .... ...++++.++++.+++. +..++.+..|||
T Consensus 89 ~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~---~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~ 164 (265)
T PRK14252 89 SPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIR---GVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSG 164 (265)
T ss_pred ccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHc---CCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCH
Confidence 113469999999999886 9999998875432 1111 22345677888888763 566888999999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEE
Q 044030 180 GQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTV 259 (449)
Q Consensus 180 GerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv 259 (449)
|||||++||+||+.+|+++||||||+|||+.++..+.+.|+++++ +. |||++||++ +++.++||++++|++|+++
T Consensus 165 G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~--~~--tiiivth~~-~~~~~~~d~i~~l~~G~i~ 239 (265)
T PRK14252 165 GQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN--KV--TILIVTHNM-QQAARVSDYTAYMYMGELI 239 (265)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh--CC--EEEEEecCH-HHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999973 34 999999996 5788999999999999999
Q ss_pred EecChhhH
Q 044030 260 YFGPATAA 267 (449)
Q Consensus 260 ~~g~~~~~ 267 (449)
..|+.++.
T Consensus 240 ~~g~~~~~ 247 (265)
T PRK14252 240 EFGATDTI 247 (265)
T ss_pred EeCCHHHH
Confidence 99988765
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-42 Score=321.33 Aligned_cols=188 Identities=48% Similarity=0.795 Sum_probs=160.3
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-ccC
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-AYG 115 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-~~~ 115 (449)
.|+++|+++.| ..+ .+++.+|+|+||++++||+++|+||||||||||+++|+|+.++ .+.+|+|.++|++... ..+
T Consensus 3 ~l~~~~l~~~~-~~~-~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~~~G~i~~~g~~~~~~~~~ 79 (192)
T cd03232 3 VLTWKNLNYTV-PVK-GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTA-GVITGEILINGRPLDKNFQR 79 (192)
T ss_pred EEEEeeeEEEe-cCC-CCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcC-CCcceEEEECCEehHHHhhh
Confidence 57899999983 211 1125799999999999999999999999999999999998642 1358999999987532 235
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCC
Q 044030 116 TSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRP 195 (449)
Q Consensus 116 ~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P 195 (449)
.++|++|++.+++.+|++||+.+...+ + .||||||||++||+||+.+|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~-------------------~-------------~LSgGe~qrv~la~al~~~p 127 (192)
T cd03232 80 STGYVEQQDVHSPNLTVREALRFSALL-------------------R-------------GLSVEQRKRLTIGVELAAKP 127 (192)
T ss_pred ceEEecccCccccCCcHHHHHHHHHHH-------------------h-------------cCCHHHhHHHHHHHHHhcCC
Confidence 699999999999999999999875311 0 89999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeC-CeEEEec
Q 044030 196 KLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSA-GQTVYFG 262 (449)
Q Consensus 196 ~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~-G~iv~~g 262 (449)
++++|||||+|||+.++..+++.|+++++ .|. |||++||++..++...||++++|++ |++++.|
T Consensus 128 ~vlllDEP~~~LD~~~~~~l~~~l~~~~~-~~~--tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 128 SILFLDEPTSGLDSQAAYNIVRFLKKLAD-SGQ--AILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred cEEEEeCCCcCCCHHHHHHHHHHHHHHHH-cCC--EEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999999999999999975 455 9999999974346889999999999 9999865
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-42 Score=331.19 Aligned_cols=217 Identities=27% Similarity=0.323 Sum_probs=177.2
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEeccc---
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRL--GSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~--~~~~~~~G~I~~~g~~~~~--- 112 (449)
++++||++.| +++.+|+|+||+|++|++++|+||||||||||+++|+|+. +| .+|+|.++|.+...
T Consensus 2 i~~~nl~~~~------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---~~G~i~~~g~~~~~~~~ 72 (248)
T PRK09580 2 LSIKDLHVSV------EDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEV---TGGTVEFKGKDLLELSP 72 (248)
T ss_pred eEEEEEEEEe------CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCC---CceEEEECCCccccCCH
Confidence 7899999983 3457999999999999999999999999999999999995 34 58999999976421
Q ss_pred ---ccCcEEEEcCCCCCCCCCCHHHHHHHHHh-ccC--CC-CCCHHHHHHHHHHHHHHcCCc-hhhCccCC-CCChHHHH
Q 044030 113 ---AYGTSAYVTQDDTLITTLTVKEAVYYSAQ-LQL--PD-TMPKSDKKERAEVTIREMGLQ-DAMNTRIR-RLSGGQKR 183 (449)
Q Consensus 113 ---~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~-~~~--~~-~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~-~LSgGerq 183 (449)
....++|++|++.+++.+|+.+++.+... ... .. ........+.++++++.+++. +..++.+. .|||||||
T Consensus 73 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~q 152 (248)
T PRK09580 73 EDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKK 152 (248)
T ss_pred HHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHH
Confidence 12359999999998888888777654321 110 00 011122345678899999995 56777775 89999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhh-cCeEEEeeCCeEEEec
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQL-FHNLCLLSAGQTVYFG 262 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~-~D~v~~l~~G~iv~~g 262 (449)
||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++ .|. |||++||++ ..+... +|++++|++|++++.|
T Consensus 153 rv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~-~~~--tiii~sH~~-~~~~~~~~d~i~~l~~g~i~~~g 228 (248)
T PRK09580 153 RNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRD-GKR--SFIIVTHYQ-RILDYIKPDYVHVLYQGRIVKSG 228 (248)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCC--EEEEEeCCH-HHHHhhhCCEEEEEECCeEEEeC
Confidence 99999999999999999999999999999999999999974 444 999999996 456666 8999999999999999
Q ss_pred ChhhH
Q 044030 263 PATAA 267 (449)
Q Consensus 263 ~~~~~ 267 (449)
+++.+
T Consensus 229 ~~~~~ 233 (248)
T PRK09580 229 DFTLV 233 (248)
T ss_pred CHHHH
Confidence 88754
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-42 Score=340.65 Aligned_cols=222 Identities=23% Similarity=0.348 Sum_probs=183.4
Q ss_pred CCeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEecc
Q 044030 34 DGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSD--TRQTGKILINGHKKA 111 (449)
Q Consensus 34 ~~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~--~~~~G~I~~~g~~~~ 111 (449)
.+..|+++||++.| +++.+|+|+||+|++||+++|+|||||||||||++|+|++++. .+.+|+|.++|.++.
T Consensus 42 ~~~~l~i~nl~~~~------~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~ 115 (305)
T PRK14264 42 GDAKLSVEDLDVYY------GDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIY 115 (305)
T ss_pred CCceEEEEEEEEEe------CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 34579999999983 3457999999999999999999999999999999999998531 135899999998653
Q ss_pred c-------ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCC---------CCCC-HHHHHHHHHHHHHHcCCc----hhh
Q 044030 112 L-------AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLP---------DTMP-KSDKKERAEVTIREMGLQ----DAM 170 (449)
Q Consensus 112 ~-------~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~---------~~~~-~~~~~~~v~~~l~~lgL~----~~~ 170 (449)
. .++.++|++|++.+++. ||+||+.++...... .... ....++.+.++++.+++. +..
T Consensus 116 ~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 194 (305)
T PRK14264 116 QDGVNLVELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRL 194 (305)
T ss_pred cccccHHHHhhceEEEccCCccccc-cHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHh
Confidence 1 12469999999988875 999999987542100 0011 122345688899999884 466
Q ss_pred CccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeE
Q 044030 171 NTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNL 250 (449)
Q Consensus 171 ~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v 250 (449)
++++.+|||||||||+||+||+.+|+||||||||+|||+.++..+.+.|+++++ +. |||++||++ ..+..+||++
T Consensus 195 ~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~--~~--tiiivtH~~-~~i~~~~d~i 269 (305)
T PRK14264 195 DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE--EY--TVVVVTHNM-QQAARISDQT 269 (305)
T ss_pred cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CC--EEEEEEcCH-HHHHHhcCEE
Confidence 888999999999999999999999999999999999999999999999999974 24 999999996 5788999997
Q ss_pred -EEeeCCeEEEecChhhH
Q 044030 251 -CLLSAGQTVYFGPATAA 267 (449)
Q Consensus 251 -~~l~~G~iv~~g~~~~~ 267 (449)
++|++|+++..|+++++
T Consensus 270 ~~~l~~G~i~~~g~~~~~ 287 (305)
T PRK14264 270 AVFLTGGELVEYDDTDKI 287 (305)
T ss_pred EEEecCCEEEEeCCHHHH
Confidence 57899999999998765
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=325.07 Aligned_cols=194 Identities=28% Similarity=0.357 Sum_probs=169.8
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----c
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----A 113 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----~ 113 (449)
|+++||++.| +++.+|+|+||+|++||++||+|+||||||||+++|+|+++|. +|+|.++|.+... .
T Consensus 1 l~i~~l~~~~------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 71 (201)
T cd03231 1 LEADELTCER------DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL---AGRVLLNGGPLDFQRDSI 71 (201)
T ss_pred CEEEEEEEEe------CCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccccHHh
Confidence 4689999983 3467999999999999999999999999999999999998774 8999999987531 1
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh
Q 044030 114 YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT 193 (449)
Q Consensus 114 ~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~ 193 (449)
.+.++|++|++.+++.+|++||+.+.... . ..++++++++.+|+.+..++++.+||||||||++||+||+.
T Consensus 72 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~-----~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 142 (201)
T cd03231 72 ARGLLYLGHAPGIKTTLSVLENLRFWHAD-----H----SDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLS 142 (201)
T ss_pred hhheEEeccccccCCCcCHHHHHHhhccc-----c----cHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhc
Confidence 35699999999999999999999875321 0 23567889999999998999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEe
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLL 253 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l 253 (449)
+|+++||||||+|||+.++..+.+.|+++++ .|. |+|++||++. ++...|++++++
T Consensus 143 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~--tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 143 GRPLWILDEPTTALDKAGVARFAEAMAGHCA-RGG--MVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCC--EEEEEecCch-hhhhccceeEec
Confidence 9999999999999999999999999999874 355 9999999974 678899999887
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-43 Score=381.88 Aligned_cols=215 Identities=28% Similarity=0.437 Sum_probs=177.3
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
-.++++||+|.| . ..+..+|+|+|++|++||.+||+|+||||||||+|+|+|++.|. +|+|.+||.+...
T Consensus 470 g~I~~~nvsf~y-~---~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~---~G~I~~dg~dl~~i~~ 542 (709)
T COG2274 470 GEIEFENVSFRY-G---PDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDL 542 (709)
T ss_pred ceEEEEEEEEEe-C---CCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEeHHhcCH
Confidence 468999999994 2 13347999999999999999999999999999999999999874 9999999998632
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHH-----HHHHHHHHc--CCchhhCccCCCCChHHHH
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKE-----RAEVTIREM--GLQDAMNTRIRRLSGGQKR 183 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~~~~~~~LSgGerq 183 (449)
.++.+|||+|++.+|.. |++||+.++... .+.++..+ -+.+.+..+ |++........+|||||||
T Consensus 543 ~~lR~~ig~V~Q~~~Lf~g-SI~eNi~l~~p~-----~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQ 616 (709)
T COG2274 543 ASLRRQVGYVLQDPFLFSG-SIRENIALGNPE-----ATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQ 616 (709)
T ss_pred HHHHhheeEEcccchhhcC-cHHHHHhcCCCC-----CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHH
Confidence 24689999999999988 999999886421 22222111 122333332 3444444555789999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
|++|||||+++|+||+||||||+||+.+...|.+.|.++.+ |+|+|+++|.+ ...+.||+|++|++|+++.+|+
T Consensus 617 rlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~----~~T~I~IaHRl--~ti~~adrIiVl~~Gkiv~~gs 690 (709)
T COG2274 617 RLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ----GRTVIIIAHRL--STIRSADRIIVLDQGKIVEQGS 690 (709)
T ss_pred HHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc----CCeEEEEEccc--hHhhhccEEEEccCCceeccCC
Confidence 99999999999999999999999999999999999999973 45999999997 4688999999999999999999
Q ss_pred hhhHHH
Q 044030 264 ATAANE 269 (449)
Q Consensus 264 ~~~~~~ 269 (449)
.+++.+
T Consensus 691 ~~ell~ 696 (709)
T COG2274 691 HEELLA 696 (709)
T ss_pred HHHHHH
Confidence 988764
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=333.21 Aligned_cols=211 Identities=28% Similarity=0.402 Sum_probs=171.3
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
++++|+++.| . +.+.+|+|+||+|++|++++|+||||||||||+++|+|+.+| .+|+|.++|.+...
T Consensus 1 l~~~~l~~~~-~----~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~---~~G~v~~~g~~~~~~~~~~ 72 (236)
T cd03253 1 IEFENVTFAY-D----PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDV---SSGSILIDGQDIREVTLDS 72 (236)
T ss_pred CEEEEEEEEe-C----CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC---CCCEEEECCEEhhhCCHHH
Confidence 4688999883 1 235699999999999999999999999999999999999877 48999999986531
Q ss_pred ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHH-----HHHHHHHHc--CCchhhCccCCCCChHHHHHH
Q 044030 113 AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKE-----RAEVTIREM--GLQDAMNTRIRRLSGGQKRRV 185 (449)
Q Consensus 113 ~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~~~~~~~LSgGerqRv 185 (449)
..+.++|++|++.+++ .|+.||+.+.... ........ .+.+.++.+ +++...++++..|||||||||
T Consensus 73 ~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~-----~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl 146 (236)
T cd03253 73 LRRAIGVVPQDTVLFN-DTIGYNIRYGRPD-----ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRV 146 (236)
T ss_pred HHhhEEEECCCChhhc-chHHHHHhhcCCC-----CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHH
Confidence 1246999999998886 5999999875321 11111111 123344444 555666777899999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChh
Q 044030 186 SISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPAT 265 (449)
Q Consensus 186 ~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~ 265 (449)
+||+||+.+|+++||||||+|||+.++..+.+.|++++ + |. |||++||++. .+. .||++++|++|++++.|+++
T Consensus 147 ~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~--tiii~sh~~~-~~~-~~d~~~~l~~g~i~~~~~~~ 220 (236)
T cd03253 147 AIARAILKNPPILLLDEATSALDTHTEREIQAALRDVS-K-GR--TTIVIAHRLS-TIV-NADKIIVLKDGRIVERGTHE 220 (236)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C-CC--EEEEEcCCHH-HHH-hCCEEEEEECCEEEeeCCHH
Confidence 99999999999999999999999999999999999997 4 55 9999999974 564 59999999999999998876
Q ss_pred hHH
Q 044030 266 AAN 268 (449)
Q Consensus 266 ~~~ 268 (449)
+..
T Consensus 221 ~~~ 223 (236)
T cd03253 221 ELL 223 (236)
T ss_pred HHh
Confidence 553
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-42 Score=324.29 Aligned_cols=198 Identities=28% Similarity=0.367 Sum_probs=169.7
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc--c
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--A 113 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--~ 113 (449)
+.++++|+++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+... .
T Consensus 1 m~l~~~~l~~~~------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~ 71 (207)
T PRK13539 1 MMLEGEDLACVR------GGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPP---AAGTIKLDGGDIDDPDV 71 (207)
T ss_pred CEEEEEeEEEEE------CCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEeCcchhh
Confidence 358999999983 345799999999999999999999999999999999999876 48999999986432 2
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh
Q 044030 114 YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT 193 (449)
Q Consensus 114 ~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~ 193 (449)
.+.++|++|++.+++.+||.||+.+..... .. ..+.+.++++.+||.+..+++++.||||||||++||+||+.
T Consensus 72 ~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~---~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~ 144 (207)
T PRK13539 72 AEACHYLGHRNAMKPALTVAENLEFWAAFL---GG----EELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVS 144 (207)
T ss_pred HhhcEEecCCCcCCCCCcHHHHHHHHHHhc---CC----cHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhc
Confidence 346899999988888999999998765432 11 12347889999999988899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeC
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSA 255 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~ 255 (449)
+|+++||||||+|||+.++..+++.|++++++ |. |||++||++ .++.. |+++.+..
T Consensus 145 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~--tiii~sH~~-~~~~~--~~~~~~~~ 200 (207)
T PRK13539 145 NRPIWILDEPTAALDAAAVALFAELIRAHLAQ-GG--IVIAATHIP-LGLPG--ARELDLGP 200 (207)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHC-CC--EEEEEeCCc-hhhcc--CcEEeecC
Confidence 99999999999999999999999999998754 55 999999997 45554 88887743
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-42 Score=326.40 Aligned_cols=206 Identities=27% Similarity=0.389 Sum_probs=170.7
Q ss_pred EEEEeeEEEEeecCc-cc-ccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEEC--CE--ecc
Q 044030 38 LTWKDLTVTIVSNGK-KG-SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILIN--GH--KKA 111 (449)
Q Consensus 38 l~~~nls~~~~~~~~-~~-~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~--g~--~~~ 111 (449)
|+++||++.| .... .+ .+.+|+|+||+|++||+++|+||||||||||+++|+|+++|. +|+|.++ |. +..
T Consensus 2 l~~~~l~~~~-~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~~~g~~~~~~ 77 (224)
T TIGR02324 2 LEVEDLSKTF-TLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPD---SGRILVRHEGAWVDLA 77 (224)
T ss_pred EEEEeeEEEe-ecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEEecCCCccchh
Confidence 7899999983 2110 11 247999999999999999999999999999999999998774 8999998 42 321
Q ss_pred c---------ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch-hhCccCCCCChHH
Q 044030 112 L---------AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD-AMNTRIRRLSGGQ 181 (449)
Q Consensus 112 ~---------~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LSgGe 181 (449)
. ..+.++|++|++.+++.+||.|++.+..... ........+++.++++.+|+.+ ..++++.+|||||
T Consensus 78 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~ 154 (224)
T TIGR02324 78 QASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHLPPATFSGGE 154 (224)
T ss_pred hcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHH
Confidence 0 1246999999999999999999998865432 2233344567888999999976 4688999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEee
Q 044030 182 KRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLS 254 (449)
Q Consensus 182 rqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~ 254 (449)
|||++||+||+.+|++++|||||+|||+.++..+.+.|+++++ .|. |||++||++ ..+..+||+++.+.
T Consensus 155 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~--tii~vsH~~-~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 155 QQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKA-RGA--ALIGIFHDE-EVRELVADRVMDVT 223 (224)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCC--EEEEEeCCH-HHHHHhcceeEecC
Confidence 9999999999999999999999999999999999999999974 355 999999995 56778999998763
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-42 Score=400.76 Aligned_cols=222 Identities=27% Similarity=0.375 Sum_probs=197.1
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc--
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-- 112 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-- 112 (449)
...|+++||++.| . .+++.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++..
T Consensus 926 ~~~L~I~nLsK~y-~---~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~Pt---sG~I~i~G~dI~~~~ 998 (2272)
T TIGR01257 926 VPGVCVKNLVKIF-E---PSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPT---SGTVLVGGKDIETNL 998 (2272)
T ss_pred CceEEEEeEEEEe-c---CCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCC---ceEEEECCEECcchH
Confidence 3579999999983 2 13467999999999999999999999999999999999999874 8999999987632
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHH
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIE 190 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~a 190 (449)
.++.+||++|++.+++.+||+||+.|.++++ +.+.++.+++++++++.+||.+.+++++++|||||||||+||+|
T Consensus 999 ~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lk---g~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArA 1075 (2272)
T TIGR01257 999 DAVRQSLGMCPQHNILFHHLTVAEHILFYAQLK---GRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIA 1075 (2272)
T ss_pred HHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHH
Confidence 1356999999999999999999999987664 23344556778999999999999999999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHHHH
Q 044030 191 ILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANEF 270 (449)
Q Consensus 191 L~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~~~ 270 (449)
|+.+|+++||||||+|||+.++..++++|++++ + |+ |||++||++ +++..+||++++|++|+++..|+++.++..
T Consensus 1076 Li~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~-g~--TIIltTHdm-dea~~laDrI~iL~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1076 FVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-S-GR--TIIMSTHHM-DEADLLGDRIAIISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred HHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-C-CC--EEEEEECCH-HHHHHhCCEEEEEECCEEEEecCHHHHHHh
Confidence 999999999999999999999999999999995 4 44 999999996 588899999999999999999999988765
Q ss_pred H
Q 044030 271 F 271 (449)
Q Consensus 271 f 271 (449)
|
T Consensus 1151 ~ 1151 (2272)
T TIGR01257 1151 F 1151 (2272)
T ss_pred c
Confidence 5
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=374.71 Aligned_cols=211 Identities=25% Similarity=0.368 Sum_probs=172.4
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.++++||++.| + +++++|+|+||++++|+.+||+||||||||||+++|+|++ |. +|+|.+||.+...
T Consensus 349 ~i~~~~vsf~~-~----~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~---~G~I~i~g~~i~~~~~~ 419 (588)
T PRK11174 349 TIEAEDLEILS-P----DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PY---QGSLKINGIELRELDPE 419 (588)
T ss_pred eEEEEeeEEec-c----CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CC---CcEEEECCEecccCCHH
Confidence 59999999863 2 3467999999999999999999999999999999999998 63 8999999987632
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHH-----HHHHHHHc--CCchhhCccCCCCChHHHHH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKER-----AEVTIREM--GLQDAMNTRIRRLSGGQKRR 184 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~-----v~~~l~~l--gL~~~~~~~~~~LSgGerqR 184 (449)
.++.++||+|++.+|+. |++||+.++.. ..+.++..+. +++.++.+ |++.........||||||||
T Consensus 420 ~lr~~i~~v~Q~~~LF~~-TI~eNI~~g~~-----~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQR 493 (588)
T PRK11174 420 SWRKHLSWVGQNPQLPHG-TLRDNVLLGNP-----DASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQR 493 (588)
T ss_pred HHHhheEEecCCCcCCCc-CHHHHhhcCCC-----CCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHH
Confidence 23579999999999987 99999988631 1233322211 22333333 44433444456899999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecCh
Q 044030 185 VSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264 (449)
Q Consensus 185 v~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~ 264 (449)
++|||||+++|++++||||||+||+.++..|.+.|+++.+ ++|+|++||+++ ....||+|++|++|+++..|+.
T Consensus 494 ialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~----~~TvIiItHrl~--~i~~aD~Iivl~~G~i~e~G~~ 567 (588)
T PRK11174 494 LALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASR----RQTTLMVTHQLE--DLAQWDQIWVMQDGQIVQQGDY 567 (588)
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhC----CCEEEEEecChH--HHHhCCEEEEEeCCeEeecCCH
Confidence 9999999999999999999999999999999999999863 449999999973 4677999999999999999998
Q ss_pred hhHH
Q 044030 265 TAAN 268 (449)
Q Consensus 265 ~~~~ 268 (449)
+++.
T Consensus 568 ~eL~ 571 (588)
T PRK11174 568 AELS 571 (588)
T ss_pred HHHH
Confidence 8764
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-42 Score=366.75 Aligned_cols=223 Identities=25% Similarity=0.369 Sum_probs=185.4
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
..|+++||++.| . ..+++.+|+|+||+|++||+++|+||||||||||+|+|+|+++| +.+|+|.++|++...
T Consensus 258 ~~l~~~~l~~~~-~--~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~--~~~G~i~~~g~~~~~~~~ 332 (506)
T PRK13549 258 VILEVRNLTAWD-P--VNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPG--RWEGEIFIDGKPVKIRNP 332 (506)
T ss_pred ceEEEecCcccc-c--cccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCC--CCCcEEEECCEECCCCCH
Confidence 358999999872 1 11235699999999999999999999999999999999999873 148999999987531
Q ss_pred ---ccCcEEEEcCCC---CCCCCCCHHHHHHHHHhccCCC-C-CCHHHHHHHHHHHHHHcCCc-hhhCccCCCCChHHHH
Q 044030 113 ---AYGTSAYVTQDD---TLITTLTVKEAVYYSAQLQLPD-T-MPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSGGQKR 183 (449)
Q Consensus 113 ---~~~~i~yv~Q~~---~l~~~lTv~e~l~~~~~~~~~~-~-~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGerq 183 (449)
..+.++|++|++ .+++.+||.||+.+........ . .+..+.+++++++++.+++. +..++++++|||||||
T Consensus 333 ~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kq 412 (506)
T PRK13549 333 QQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQ 412 (506)
T ss_pred HHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHH
Confidence 124589999995 4788899999998763211100 0 12333456788999999996 5789999999999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
||+||+||+.+|++|||||||+|||+.++..++++|++++++ |. |||++|||+ .++.++||++++|++|+++..|+
T Consensus 413 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~--tvi~~sHd~-~~~~~~~d~v~~l~~G~i~~~~~ 488 (506)
T PRK13549 413 KAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQ-GV--AIIVISSEL-PEVLGLSDRVLVMHEGKLKGDLI 488 (506)
T ss_pred HHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHC-CC--EEEEECCCH-HHHHHhCCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999999999854 55 999999996 57899999999999999999987
Q ss_pred hhhH
Q 044030 264 ATAA 267 (449)
Q Consensus 264 ~~~~ 267 (449)
++++
T Consensus 489 ~~~~ 492 (506)
T PRK13549 489 NHNL 492 (506)
T ss_pred cccC
Confidence 7643
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-42 Score=336.68 Aligned_cols=208 Identities=23% Similarity=0.332 Sum_probs=177.4
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.|+++|+++.| .. +...+|+|+||+|++||+++|+||||||||||+++|+|+++ . +|+|+++|.+...
T Consensus 2 ~i~~~nls~~~-~~---~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~---~G~I~i~g~~i~~~~~~ 73 (275)
T cd03289 2 QMTVKDLTAKY-TE---GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGDIQIDGVSWNSVPLQ 73 (275)
T ss_pred eEEEEEEEEEe-CC---CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C---CcEEEECCEEhhhCCHH
Confidence 37899999983 21 23569999999999999999999999999999999999985 2 7999999987532
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCC-----------CChH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRR-----------LSGG 180 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~-----------LSgG 180 (449)
.++.++|+||++.+|+. |+++|+.... ... .+++.+.++.+||.+..++.+.+ ||||
T Consensus 74 ~lr~~i~~v~q~~~lf~~-tv~~nl~~~~------~~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G 142 (275)
T cd03289 74 KWRKAFGVIPQKVFIFSG-TFRKNLDPYG------KWS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHG 142 (275)
T ss_pred HHhhhEEEECCCcccchh-hHHHHhhhcc------CCC----HHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHH
Confidence 13579999999999985 9999995321 111 23467788899999888888876 9999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 181 erqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
||||++|||||+.+|+|++|||||++||+.+...+.+.|+++. . ++ |||++||++ ..+. .||+|++|++|++++
T Consensus 143 ~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~-~~--tii~isH~~-~~i~-~~dri~vl~~G~i~~ 216 (275)
T cd03289 143 HKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-A-DC--TVILSEHRI-EAML-ECQRFLVIEENKVRQ 216 (275)
T ss_pred HHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-C-CC--EEEEEECCH-HHHH-hCCEEEEecCCeEee
Confidence 9999999999999999999999999999999999999999875 3 44 999999997 4555 599999999999999
Q ss_pred ecChhhHHH
Q 044030 261 FGPATAANE 269 (449)
Q Consensus 261 ~g~~~~~~~ 269 (449)
.|+++++..
T Consensus 217 ~g~~~~l~~ 225 (275)
T cd03289 217 YDSIQKLLN 225 (275)
T ss_pred cCCHHHHhh
Confidence 999988753
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-42 Score=320.75 Aligned_cols=193 Identities=27% Similarity=0.341 Sum_probs=165.3
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----c
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----A 113 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----~ 113 (449)
++++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+... .
T Consensus 1 l~~~~l~~~~------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 71 (198)
T TIGR01189 1 LAARNLACSR------GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPD---SGEVRWNGTALAEQRDEP 71 (198)
T ss_pred CEEEEEEEEE------CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEEcccchHHh
Confidence 4688999883 3467999999999999999999999999999999999998774 8999999987431 1
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh
Q 044030 114 YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT 193 (449)
Q Consensus 114 ~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~ 193 (449)
.+.++|++|++.+++.+|+.||+.+...... . + ++.+.++++.+|+.+..++++..||||||||++||+|++.
T Consensus 72 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~-----~-~-~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 144 (198)
T TIGR01189 72 HRNILYLGHLPGLKPELSALENLHFWAAIHG-----G-A-QRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLS 144 (198)
T ss_pred hhheEEeccCcccccCCcHHHHHHHHHHHcC-----C-c-HHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhc
Confidence 2468999999989998999999988654321 1 1 3457889999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEE
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCL 252 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~ 252 (449)
+|++++|||||+|||+.++..+.+.|+++++ .|. |||++||++. .-.|++++.
T Consensus 145 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~--tii~~sH~~~---~~~~~~~~~ 197 (198)
T TIGR01189 145 RAPLWILDEPTTALDKAGVALLAGLLRAHLA-RGG--IVLLTTHQDL---GLVEARELR 197 (198)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCC--EEEEEEcccc---cccceEEee
Confidence 9999999999999999999999999999974 454 9999999974 234677654
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-42 Score=365.76 Aligned_cols=214 Identities=22% Similarity=0.372 Sum_probs=181.1
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
..|+++|+++. + + .+|+|+||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++...
T Consensus 264 ~~l~~~~l~~~-~-----~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~---~G~I~~~g~~~~~~~~ 332 (510)
T PRK09700 264 TVFEVRNVTSR-D-----R--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRA---GGEIRLNGKDISPRSP 332 (510)
T ss_pred cEEEEeCcccc-C-----C--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---CCeEEECCEECCCCCH
Confidence 36999999975 1 1 3899999999999999999999999999999999999774 8999999986531
Q ss_pred ---ccCcEEEEcCC---CCCCCCCCHHHHHHHHHhcc---CCC--C-CCHHHHHHHHHHHHHHcCCc-hhhCccCCCCCh
Q 044030 113 ---AYGTSAYVTQD---DTLITTLTVKEAVYYSAQLQ---LPD--T-MPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSG 179 (449)
Q Consensus 113 ---~~~~i~yv~Q~---~~l~~~lTv~e~l~~~~~~~---~~~--~-~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSg 179 (449)
..+.++|++|+ ..+++.+||.||+.+....+ ... + ......+++++++++.+|+. +..++++++|||
T Consensus 333 ~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg 412 (510)
T PRK09700 333 LDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSG 412 (510)
T ss_pred HHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCCh
Confidence 12469999998 46889999999998753221 000 1 11223345678999999997 789999999999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEE
Q 044030 180 GQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTV 259 (449)
Q Consensus 180 GerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv 259 (449)
||||||+||+||+.+|++|||||||+|||+.++..+++.|+++++ .|. |||++|||+ .++..+||++++|++|+++
T Consensus 413 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~--tvi~vsHd~-~~~~~~~d~i~~l~~G~i~ 488 (510)
T PRK09700 413 GNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLAD-DGK--VILMVSSEL-PEIITVCDRIAVFCEGRLT 488 (510)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHH-CCC--EEEEEcCCH-HHHHhhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999985 455 999999996 5789999999999999999
Q ss_pred EecCh
Q 044030 260 YFGPA 264 (449)
Q Consensus 260 ~~g~~ 264 (449)
..++.
T Consensus 489 ~~~~~ 493 (510)
T PRK09700 489 QILTN 493 (510)
T ss_pred EEecC
Confidence 88765
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-42 Score=326.52 Aligned_cols=202 Identities=23% Similarity=0.368 Sum_probs=167.5
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
++++|+++.| . .+.+.+|+|+||++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+...
T Consensus 3 l~~~~l~~~~-~---~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~ 75 (221)
T cd03244 3 IEFKNVSLRY-R---PNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVEL---SSGSILIDGVDISKIGLHD 75 (221)
T ss_pred EEEEEEEEec-C---CCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCC---CCCEEEECCEEhHhCCHHH
Confidence 7899999983 2 1235799999999999999999999999999999999999877 48999999987531
Q ss_pred ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhh-----------CccCCCCChHH
Q 044030 113 AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAM-----------NTRIRRLSGGQ 181 (449)
Q Consensus 113 ~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-----------~~~~~~LSgGe 181 (449)
..+.++|++|++.+++ .||+||+.+... .. .+++.+.++.+++.+.. +..+..|||||
T Consensus 76 ~~~~i~~~~q~~~l~~-~tv~enl~~~~~------~~----~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~ 144 (221)
T cd03244 76 LRSRISIIPQDPVLFS-GTIRSNLDPFGE------YS----DEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQ 144 (221)
T ss_pred HhhhEEEECCCCcccc-chHHHHhCcCCC------CC----HHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHH
Confidence 1356999999998776 599999864321 11 12345556666665443 56889999999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEe
Q 044030 182 KRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYF 261 (449)
Q Consensus 182 rqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~ 261 (449)
|||++||+||+.+|++++|||||+|||+.++..+.+.|++++ + +. |||++||++. ++. .||++++|++|++++.
T Consensus 145 ~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~--tii~~sh~~~-~~~-~~d~i~~l~~g~~~~~ 218 (221)
T cd03244 145 RQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAF-K-DC--TVLTIAHRLD-TII-DSDRILVLDKGRVVEF 218 (221)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CC--EEEEEeCCHH-HHh-hCCEEEEEECCeEEec
Confidence 999999999999999999999999999999999999999986 3 34 9999999974 565 5999999999999988
Q ss_pred cC
Q 044030 262 GP 263 (449)
Q Consensus 262 g~ 263 (449)
|+
T Consensus 219 ~~ 220 (221)
T cd03244 219 DS 220 (221)
T ss_pred CC
Confidence 75
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-42 Score=352.24 Aligned_cols=216 Identities=27% Similarity=0.433 Sum_probs=193.6
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc--
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-- 112 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-- 112 (449)
...++++||+++| +..++|+||||++.+||++||+|.||||||||+|+|+|.++|+ +|+|+++|++...
T Consensus 6 ~~ll~~~~i~K~F------ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~---~G~I~~~G~~~~~~s 76 (500)
T COG1129 6 PPLLELRGISKSF------GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDGKPVAFSS 76 (500)
T ss_pred cceeeeecceEEc------CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCC---CceEEECCEEccCCC
Confidence 3468999999983 6788999999999999999999999999999999999999875 9999999997542
Q ss_pred ----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCC-CCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHH
Q 044030 113 ----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLP-DTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSI 187 (449)
Q Consensus 113 ----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i 187 (449)
....|+.|+|+..+.|+|||.||+.++.....+ .-++.+...+++.++|+.+|+....++++++||+||||.|.|
T Consensus 77 p~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeI 156 (500)
T COG1129 77 PRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEI 156 (500)
T ss_pred HHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHH
Confidence 125699999999999999999999888665432 235667778889999999999655899999999999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 188 SIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 188 a~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
|+||..+++|||||||||.|+......+++.++++++ .| .+||++||.+ ++++++||++.||++|+.+..++
T Consensus 157 ArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~-~G--v~ii~ISHrl-~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 157 ARALSFDARVLILDEPTAALTVKETERLFDLIRRLKA-QG--VAIIYISHRL-DEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CC--CEEEEEcCcH-HHHHHhcCEEEEEeCCEEeeecc
Confidence 9999999999999999999999999999999999985 44 4999999996 69999999999999999999887
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-42 Score=355.42 Aligned_cols=212 Identities=26% Similarity=0.416 Sum_probs=179.9
Q ss_pred CCCeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc
Q 044030 33 DDGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL 112 (449)
Q Consensus 33 ~~~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~ 112 (449)
.+++.++.+|+++.| . +++++++|+|+++++|+.+||+|+||||||||+++|+|+.+| ++|+|.+||.+...
T Consensus 316 ~~~~ei~~~~l~~~y-~----~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~---~~G~I~vng~~l~~ 387 (559)
T COG4988 316 EPPIEISLENLSFRY-P----DGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP---TQGEIRVNGIDLRD 387 (559)
T ss_pred CCCceeeecceEEec-C----CCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCC---CCceEEECCccccc
Confidence 346677788999983 2 334899999999999999999999999999999999999987 49999999987532
Q ss_pred -----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCc------cC----CCC
Q 044030 113 -----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNT------RI----RRL 177 (449)
Q Consensus 113 -----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~------~~----~~L 177 (449)
.+++++||+|++.+|+. |++||+.++.. .. .++.+.++++..|+.+..+. .+ .+|
T Consensus 388 l~~~~~~k~i~~v~Q~p~lf~g-TireNi~l~~~-----~~----s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~L 457 (559)
T COG4988 388 LSPEAWRKQISWVSQNPYLFAG-TIRENILLARP-----DA----SDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGL 457 (559)
T ss_pred cCHHHHHhHeeeeCCCCccccc-cHHHHhhccCC-----cC----CHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCC
Confidence 24789999999999998 99999988632 11 23456677777776554443 22 579
Q ss_pred ChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCe
Q 044030 178 SGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQ 257 (449)
Q Consensus 178 SgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~ 257 (449)
||||+|||++||||+.+++++++||||++||.++...|.+.|.++++ ++|+|++||++ ....-+|+|++|++|+
T Consensus 458 SgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~----~ktvl~itHrl--~~~~~~D~I~vld~G~ 531 (559)
T COG4988 458 SGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK----QKTVLVITHRL--EDAADADRIVVLDNGR 531 (559)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh----CCeEEEEEcCh--HHHhcCCEEEEecCCc
Confidence 99999999999999999999999999999999999999999999995 44999999996 3567799999999999
Q ss_pred EEEecChhhHH
Q 044030 258 TVYFGPATAAN 268 (449)
Q Consensus 258 iv~~g~~~~~~ 268 (449)
++..|..+++.
T Consensus 532 l~~~g~~~~L~ 542 (559)
T COG4988 532 LVEQGTHEELS 542 (559)
T ss_pred eeccCCHHHHh
Confidence 99999998774
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-42 Score=318.53 Aligned_cols=178 Identities=30% Similarity=0.491 Sum_probs=152.7
Q ss_pred cccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-------ccCcEEEEcCCCC-
Q 044030 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-------AYGTSAYVTQDDT- 125 (449)
Q Consensus 54 ~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-------~~~~i~yv~Q~~~- 125 (449)
+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+... ..+.++|++|++.
T Consensus 3 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 79 (190)
T TIGR01166 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ---SGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDD 79 (190)
T ss_pred CccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceeEEECCEEccccccchHHHHhhEEEEecChhh
Confidence 4567999999999999999999999999999999999998774 8999999987531 1246999999973
Q ss_pred CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 044030 126 LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTS 205 (449)
Q Consensus 126 l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPts 205 (449)
.+...||+||+.+..... ..+..+..+++.++++.+||.+..++++.+||||||||++||+||+.+|++++|||||+
T Consensus 80 ~~~~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~ 156 (190)
T TIGR01166 80 QLFAADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTA 156 (190)
T ss_pred ccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 233479999999865432 22334445678899999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCc
Q 044030 206 GLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPS 240 (449)
Q Consensus 206 gLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~ 240 (449)
|||+.++..+.+.|++++++ |. |||++||++.
T Consensus 157 ~LD~~~~~~~~~~l~~~~~~-~~--tili~sH~~~ 188 (190)
T TIGR01166 157 GLDPAGREQMLAILRRLRAE-GM--TVVISTHDVD 188 (190)
T ss_pred cCCHHHHHHHHHHHHHHHHc-CC--EEEEEeeccc
Confidence 99999999999999999753 55 9999999963
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-42 Score=312.97 Aligned_cols=169 Identities=32% Similarity=0.552 Sum_probs=151.3
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----c
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----A 113 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----~ 113 (449)
++++|+++.| +.+.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+... .
T Consensus 1 l~~~~l~~~~------~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 71 (173)
T cd03230 1 IEVRNLSKRY------GKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD---SGEIKVLGKDIKKEPEEV 71 (173)
T ss_pred CEEEEEEEEE------CCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccchHhh
Confidence 4689999983 2346999999999999999999999999999999999998774 8999999987531 1
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh
Q 044030 114 YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT 193 (449)
Q Consensus 114 ~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~ 193 (449)
++.++|++|++.+++.+|+.||+. ||||||||++||+||+.
T Consensus 72 ~~~i~~~~q~~~~~~~~tv~~~~~---------------------------------------LS~G~~qrv~laral~~ 112 (173)
T cd03230 72 KRRIGYLPEEPSLYENLTVRENLK---------------------------------------LSGGMKQRLALAQALLH 112 (173)
T ss_pred hccEEEEecCCccccCCcHHHHhh---------------------------------------cCHHHHHHHHHHHHHHc
Confidence 356999999999999999999973 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeE
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQT 258 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~i 258 (449)
+|++++|||||+|||+.++..+.+.|++++++ |. |+|++||++ .++...||++++|++|++
T Consensus 113 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~--tiii~th~~-~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 113 DPELLILDEPTSGLDPESRREFWELLRELKKE-GK--TILLSSHIL-EEAERLCDRVAILNNGRI 173 (173)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CC--EEEEECCCH-HHHHHhCCEEEEEeCCCC
Confidence 99999999999999999999999999999865 55 999999996 578889999999999974
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-42 Score=362.87 Aligned_cols=207 Identities=24% Similarity=0.294 Sum_probs=178.3
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-c--
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-A-- 113 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-~-- 113 (449)
+|+++|+++.| +++.+|+|+||++++|++++|+||||||||||||+|+|+++|+ +|+|.++|.+... .
T Consensus 3 ~l~~~~l~~~~------~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~---~G~i~~~~~~~~~~~~~ 73 (490)
T PRK10938 3 SLQISQGTFRL------SDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLL---SGERQSQFSHITRLSFE 73 (490)
T ss_pred eEEEEeEEEEc------CCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CceEEECCcccccCCHH
Confidence 58999999983 3456999999999999999999999999999999999998774 8999999875421 1
Q ss_pred --cCcEEEEcCCCCC--C------CCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHH
Q 044030 114 --YGTSAYVTQDDTL--I------TTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKR 183 (449)
Q Consensus 114 --~~~i~yv~Q~~~l--~------~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerq 183 (449)
.+.++|++|++.. + ..+||.|++.+. ...++++.++++.+||.+..++++.+|||||||
T Consensus 74 ~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~q 142 (490)
T PRK10938 74 QLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-----------VKDPARCEQLAQQFGITALLDRRFKYLSTGETR 142 (490)
T ss_pred HHHHHhceeccCcchhhcccchhhccccHHHhcccc-----------hhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHH
Confidence 2358999998643 1 146888876431 122456889999999999999999999999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
||+||+||+.+|++|||||||+|||+.++..+++.|++++++ |. |||++||++ ..+.++||++++|++|+++..|+
T Consensus 143 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~--tvii~tH~~-~~~~~~~d~v~~l~~G~i~~~~~ 218 (490)
T PRK10938 143 KTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQS-GI--TLVLVLNRF-DEIPDFVQFAGVLADCTLAETGE 218 (490)
T ss_pred HHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhc-CC--eEEEEeCCH-HHHHhhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999999999999854 55 999999997 57889999999999999999999
Q ss_pred hhhH
Q 044030 264 ATAA 267 (449)
Q Consensus 264 ~~~~ 267 (449)
+++.
T Consensus 219 ~~~~ 222 (490)
T PRK10938 219 REEI 222 (490)
T ss_pred HHHH
Confidence 8765
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=329.38 Aligned_cols=194 Identities=29% Similarity=0.436 Sum_probs=176.2
Q ss_pred eeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec---------ccccCcEEEEcCCCCCCCCC
Q 044030 60 EDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKK---------ALAYGTSAYVTQDDTLITTL 130 (449)
Q Consensus 60 ~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~---------~~~~~~i~yv~Q~~~l~~~l 130 (449)
=+++|..+.-.++||-|+||||||||+|+|+|+.+|+ +|.|.+||.-. ...++++||||||..+||++
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPd---eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~ 91 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHY 91 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCcc---ccEEEECCEEeecccCCcccChhhheeeeEeeccccccce
Confidence 3578888887899999999999999999999999885 89999999742 11346899999999999999
Q ss_pred CHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH
Q 044030 131 TVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSA 210 (449)
Q Consensus 131 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~ 210 (449)
||+.||.|+.... .....+++++.||+++.+++++..|||||||||+|+|||++.|++|+||||.+.||..
T Consensus 92 tVrgNL~YG~~~~---------~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~ 162 (352)
T COG4148 92 TVRGNLRYGMWKS---------MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLP 162 (352)
T ss_pred EEecchhhhhccc---------chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccc
Confidence 9999999986431 2345788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 211 ASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 211 ~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
-+.+++-.|.+++++.+. .|+.+||.+ +|+.+++|+|++|++|++..+|+.+++.
T Consensus 163 RK~EilpylERL~~e~~I--PIlYVSHS~-~Ev~RLAd~vV~le~GkV~A~g~~e~v~ 217 (352)
T COG4148 163 RKREILPYLERLRDEINI--PILYVSHSL-DEVLRLADRVVVLENGKVKASGPLEEVW 217 (352)
T ss_pred hhhHHHHHHHHHHHhcCC--CEEEEecCH-HHHHhhhheEEEecCCeEEecCcHHHHh
Confidence 999999999999988876 999999996 6999999999999999999999998764
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-42 Score=328.64 Aligned_cols=208 Identities=25% Similarity=0.424 Sum_probs=170.9
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc--
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-- 112 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-- 112 (449)
.-.++++|+++.| .. .++..+|+|+||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 9 ~~~l~~~~l~~~~-~~--~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~ 82 (226)
T cd03248 9 KGIVKFQNVTFAY-PT--RPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQ---GGQVLLDGKPISQYE 82 (226)
T ss_pred CceEEEEEEEEEe-CC--CCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CcEEEECCCchHHcC
Confidence 3468999999983 21 11246999999999999999999999999999999999998774 8999999976421
Q ss_pred ---ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCH---HHHHHHHHHHHHHc--CCchhhCccCCCCChHHHHH
Q 044030 113 ---AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPK---SDKKERAEVTIREM--GLQDAMNTRIRRLSGGQKRR 184 (449)
Q Consensus 113 ---~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~---~~~~~~v~~~l~~l--gL~~~~~~~~~~LSgGerqR 184 (449)
..+.++|++|++.+++ .||+||+.++.... .... ......+.++++.+ |+.+..++++.+||||||||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~---~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qr 158 (226)
T cd03248 83 HKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSC---SFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQR 158 (226)
T ss_pred HHHHHhhEEEEecccHHHh-hhHHHHhccccCCC---CHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHH
Confidence 1346999999998876 59999998753211 1100 11112356788888 88888899999999999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeE
Q 044030 185 VSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQT 258 (449)
Q Consensus 185 v~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~i 258 (449)
|+||+||+.+|+++||||||+|||+.++..+.+.|+++++ +. |||++||++. ++. .||++++|++|++
T Consensus 159 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~--tii~~sh~~~-~~~-~~d~i~~l~~g~i 226 (226)
T cd03248 159 VAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE--RR--TVLVIAHRLS-TVE-RADQILVLDGGRI 226 (226)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC--CC--EEEEEECCHH-HHH-hCCEEEEecCCcC
Confidence 9999999999999999999999999999999999999863 34 9999999974 564 5999999999874
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-42 Score=301.57 Aligned_cols=215 Identities=27% Similarity=0.383 Sum_probs=189.5
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
+.|.++|+++.| |..++|.|++++.++||.+.++||||||||||++.|.=+..| .+|+..+-|...+.
T Consensus 1 msirv~~in~~y------g~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p---~sg~l~ia~~~fd~s~~ 71 (242)
T COG4161 1 MSIQLNGINCFY------GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMP---RSGTLNIAGNHFDFSKT 71 (242)
T ss_pred CceEEccccccc------ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCC---CCCeEEecccccccccC
Confidence 357899999973 677899999999999999999999999999999999987766 49999998754221
Q ss_pred --------ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHH
Q 044030 113 --------AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRR 184 (449)
Q Consensus 113 --------~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR 184 (449)
.++.+|+|+|+..++|.+||.||+.-+. ++. .++++++.+.++.++++.+.|.+.+|+.+-.|||||+||
T Consensus 72 ~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap-~kv-~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqr 149 (242)
T COG4161 72 PSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAP-CRV-LGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQR 149 (242)
T ss_pred ccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhh-HHH-hCCCHHHHHHHHHHHHHHhccccccccCceecccchhhh
Confidence 1346899999999999999999996553 221 256788888899999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecCh
Q 044030 185 VSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264 (449)
Q Consensus 185 v~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~ 264 (449)
|+|||||+.+|.+|++||||++|||.-..+++++|++++. .|. |-+++||.. ....+.+.+|+.|.+|+|+..|+.
T Consensus 150 vaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~-tgi--tqvivthev-~va~k~as~vvyme~g~ive~g~a 225 (242)
T COG4161 150 VAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAE-TGI--TQVIVTHEV-EVARKTASRVVYMENGHIVEQGDA 225 (242)
T ss_pred HHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHh-cCc--eEEEEEeeh-hHHHhhhhheEeeecCeeEeecch
Confidence 9999999999999999999999999999999999999994 555 999999996 467889999999999999999986
Q ss_pred h
Q 044030 265 T 265 (449)
Q Consensus 265 ~ 265 (449)
+
T Consensus 226 ~ 226 (242)
T COG4161 226 S 226 (242)
T ss_pred h
Confidence 4
|
|
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-41 Score=349.68 Aligned_cols=212 Identities=23% Similarity=0.293 Sum_probs=179.9
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCc
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGT 116 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~ 116 (449)
+++++||++.+ . ....+.+|+|+||++++|+++||+|||||||||||++|+|+++|. +|+|.++|.+.
T Consensus 21 mL~lknL~~~~-~--~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~---sGeI~I~G~~~------ 88 (549)
T PRK13545 21 FDKLKDLFFRS-K--DGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPN---KGTVDIKGSAA------ 88 (549)
T ss_pred eeEEEEEEEec-C--CCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---ceEEEECCEee------
Confidence 58899998872 2 111246999999999999999999999999999999999999774 89999999752
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCC
Q 044030 117 SAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPK 196 (449)
Q Consensus 117 i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~ 196 (449)
++.+...+++.+|++||+.+..... ..+..+..+++.++++.+++.+..+++++.||||||||++||+||+.+|+
T Consensus 89 --~i~~~~~l~~~lTV~EnL~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~ 163 (549)
T PRK13545 89 --LIAISSGLNGQLTGIENIELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPD 163 (549)
T ss_pred --eEEeccccCCCCcHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCC
Confidence 2223445677889999998765332 22344455667889999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHHH
Q 044030 197 LLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANE 269 (449)
Q Consensus 197 llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~~ 269 (449)
+|||||||+|||+.++..+++.|+++++ .|. |||++||++ .++..+||++++|++|++++.|+++++..
T Consensus 164 LLLLDEPTsgLD~~sr~~LlelL~el~~-~G~--TIIIVSHdl-~~i~~l~DrIivL~~GkIv~~G~~~el~~ 232 (549)
T PRK13545 164 ILVIDEALSVGDQTFTKKCLDKMNEFKE-QGK--TIFFISHSL-SQVKSFCTKALWLHYGQVKEYGDIKEVVD 232 (549)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHh-CCC--EEEEEECCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999974 455 999999996 57889999999999999999999887654
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=312.54 Aligned_cols=171 Identities=35% Similarity=0.528 Sum_probs=151.8
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
++++|+++.| +++.+++|+||++++||+++|+||||||||||+++|+|+++| .+|+|.++|.+...
T Consensus 1 i~~~~l~~~~------~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~ 71 (178)
T cd03229 1 LELKNVSKRY------GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEP---DSGSILIDGEDLTDLEDEL 71 (178)
T ss_pred CEEEEEEEEE------CCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEccccchhH
Confidence 4689999883 345799999999999999999999999999999999999877 48999999986531
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHH
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIE 190 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~a 190 (449)
..+.++|++|++.+++.+|++||+.+. ||||||||++||+|
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~t~~~~l~~~-------------------------------------lS~G~~qr~~la~a 114 (178)
T cd03229 72 PPLRRRIGMVFQDFALFPHLTVLENIALG-------------------------------------LSGGQQQRVALARA 114 (178)
T ss_pred HHHhhcEEEEecCCccCCCCCHHHheeec-------------------------------------CCHHHHHHHHHHHH
Confidence 135799999999999899999997532 99999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCe
Q 044030 191 ILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQ 257 (449)
Q Consensus 191 L~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~ 257 (449)
|+.+|++++|||||+|||+.++..+.+.|++++++.|. |+|++||++ .++..+||++++|++|+
T Consensus 115 l~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~--tiii~sH~~-~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 115 LAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGI--TVVLVTHDL-DEAARLADRVVVLRDGK 178 (178)
T ss_pred HHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC--EEEEEeCCH-HHHHHhcCEEEEEeCCC
Confidence 99999999999999999999999999999999865455 999999996 57888999999999885
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=318.05 Aligned_cols=192 Identities=24% Similarity=0.334 Sum_probs=165.3
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----c
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----A 113 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----~ 113 (449)
|+++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|+++|.+... .
T Consensus 2 l~~~~l~~~~------~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~v~~~g~~~~~~~~~~ 72 (200)
T PRK13540 2 LDVIELDFDY------HDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE---KGEILFERQSIKKDLCTY 72 (200)
T ss_pred EEEEEEEEEe------CCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeeEEECCCccccCHHHH
Confidence 7899999983 3457999999999999999999999999999999999998774 8999999986531 1
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh
Q 044030 114 YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT 193 (449)
Q Consensus 114 ~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~ 193 (449)
.+.++|++|+..+++.+||.||+.+..... .. ...+.++++.+++.+..++++..||||||||++||+|++.
T Consensus 73 ~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~------~~--~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~ 144 (200)
T PRK13540 73 QKQLCFVGHRSGINPYLTLRENCLYDIHFS------PG--AVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMS 144 (200)
T ss_pred HhheEEeccccccCcCCCHHHHHHHHHhcC------cc--hHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhc
Confidence 356999999999989999999998864221 11 2467889999999888899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEE
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLC 251 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~ 251 (449)
+|++++|||||+|||+.++..+.+.|+++++ .|. |||++||++. ....+|...
T Consensus 145 ~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~-~~~--tiii~sh~~~--~~~~~d~~~ 197 (200)
T PRK13540 145 KAKLWLLDEPLVALDELSLLTIITKIQEHRA-KGG--AVLLTSHQDL--PLNKADYEE 197 (200)
T ss_pred CCCEEEEeCCCcccCHHHHHHHHHHHHHHHH-cCC--EEEEEeCCch--hccccchhh
Confidence 9999999999999999999999999999874 455 9999999963 446677544
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=360.50 Aligned_cols=221 Identities=25% Similarity=0.362 Sum_probs=183.5
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
..|+++|+++.| .. .+++.+|+|+||++++||+++|+||||||||||||+|+|+++|. .+|+|.++|++...
T Consensus 256 ~~l~~~~l~~~~-~~--~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~--~~G~i~~~g~~~~~~~~ 330 (500)
T TIGR02633 256 VILEARNLTCWD-VI--NPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGK--FEGNVFINGKPVDIRNP 330 (500)
T ss_pred ceEEEeCCcccc-cc--cccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCC--CCeEEEECCEECCCCCH
Confidence 469999999872 10 02356999999999999999999999999999999999998741 48999999987531
Q ss_pred ---ccCcEEEEcCCC---CCCCCCCHHHHHHHHHhccCC--CCCCHHHHHHHHHHHHHHcCCch-hhCccCCCCChHHHH
Q 044030 113 ---AYGTSAYVTQDD---TLITTLTVKEAVYYSAQLQLP--DTMPKSDKKERAEVTIREMGLQD-AMNTRIRRLSGGQKR 183 (449)
Q Consensus 113 ---~~~~i~yv~Q~~---~l~~~lTv~e~l~~~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LSgGerq 183 (449)
.++.++|++|+. .+++.+||+||+.++..-... ........++++.++++.+++.+ ..+++++.|||||||
T Consensus 331 ~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkq 410 (500)
T TIGR02633 331 AQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQ 410 (500)
T ss_pred HHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHH
Confidence 134699999995 588999999999875321110 01122334567889999999974 689999999999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
||+||+||+.+|++|||||||+|||+.++..+++.|++++++ |. |||++|||+ .++.++||++++|++|+++..++
T Consensus 411 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~--tviivsHd~-~~~~~~~d~v~~l~~G~i~~~~~ 486 (500)
T TIGR02633 411 KAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQE-GV--AIIVVSSEL-AEVLGLSDRVLVIGEGKLKGDFV 486 (500)
T ss_pred HHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhC-CC--EEEEECCCH-HHHHHhCCEEEEEECCEEEEEEc
Confidence 999999999999999999999999999999999999999854 55 999999997 57899999999999999998775
Q ss_pred hh
Q 044030 264 AT 265 (449)
Q Consensus 264 ~~ 265 (449)
.+
T Consensus 487 ~~ 488 (500)
T TIGR02633 487 NH 488 (500)
T ss_pred cc
Confidence 43
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=316.82 Aligned_cols=186 Identities=30% Similarity=0.363 Sum_probs=158.1
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEeccc---
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRL--GSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~--~~~~~~~G~I~~~g~~~~~--- 112 (449)
++++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+. +| .+|+|.++|.+...
T Consensus 1 l~~~~l~~~~------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p---~~G~i~~~g~~~~~~~~ 71 (200)
T cd03217 1 LEIKDLHVSV------GGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEV---TEGEILFKGEDITDLPP 71 (200)
T ss_pred CeEEEEEEEe------CCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCC---CccEEEECCEECCcCCH
Confidence 4689999983 2357999999999999999999999999999999999984 44 58999999987532
Q ss_pred ---ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHH
Q 044030 113 ---AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISI 189 (449)
Q Consensus 113 ---~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~ 189 (449)
....++|++|++.+++.+|+.+++ +.....||||||||++||+
T Consensus 72 ~~~~~~~i~~v~q~~~~~~~~~~~~~l----------------------------------~~~~~~LS~G~~qrv~lar 117 (200)
T cd03217 72 EERARLGIFLAFQYPPEIPGVKNADFL----------------------------------RYVNEGFSGGEKKRNEILQ 117 (200)
T ss_pred HHHhhCcEEEeecChhhccCccHHHHH----------------------------------hhccccCCHHHHHHHHHHH
Confidence 123599999999988888888766 1123579999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHh-hcCeEEEeeCCeEEEecChhhHH
Q 044030 190 EILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQ-LFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 190 aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~-~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
||+.+|++++|||||+|||+.++..+.+.|+++++ .+. |||++||++. .+.. +||++++|++|++++.|+.+ +.
T Consensus 118 al~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~-~~~--tiii~sh~~~-~~~~~~~d~i~~l~~G~i~~~~~~~-~~ 192 (200)
T cd03217 118 LLLLEPDLAILDEPDSGLDIDALRLVAEVINKLRE-EGK--SVLIITHYQR-LLDYIKPDRVHVLYDGRIVKSGDKE-LA 192 (200)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCC--EEEEEecCHH-HHHHhhCCEEEEEECCEEEEEccHH-HH
Confidence 99999999999999999999999999999999974 344 9999999974 6666 79999999999999999554 44
Q ss_pred HHH
Q 044030 269 EFF 271 (449)
Q Consensus 269 ~~f 271 (449)
+.+
T Consensus 193 ~~~ 195 (200)
T cd03217 193 LEI 195 (200)
T ss_pred hhh
Confidence 333
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=360.51 Aligned_cols=214 Identities=26% Similarity=0.422 Sum_probs=181.1
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
..++++|+++. +|+|+||+|++||+++|+||||||||||+|+|+|+.+|+ +|+|.++|++...
T Consensus 256 ~~l~~~~l~~~-----------~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~---~G~I~~~g~~i~~~~~ 321 (501)
T PRK10762 256 VRLKVDNLSGP-----------GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRT---SGYVTLDGHEVVTRSP 321 (501)
T ss_pred cEEEEeCcccC-----------CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCH
Confidence 35788888742 699999999999999999999999999999999998774 8999999987531
Q ss_pred ---ccCcEEEEcCCC---CCCCCCCHHHHHHHHHhccCC---CCCCHHHHHHHHHHHHHHcCCc-hhhCccCCCCChHHH
Q 044030 113 ---AYGTSAYVTQDD---TLITTLTVKEAVYYSAQLQLP---DTMPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSGGQK 182 (449)
Q Consensus 113 ---~~~~i~yv~Q~~---~l~~~lTv~e~l~~~~~~~~~---~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGer 182 (449)
.++.++||+|++ .+++.+||.||+.+....... ......+.+++++++++.+|+. +..++++..||||||
T Consensus 322 ~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGek 401 (501)
T PRK10762 322 QDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQ 401 (501)
T ss_pred HHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHH
Confidence 124699999996 578889999999875321100 0012233456788999999995 678999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 183 RRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 183 qRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
|||+||+||+.+|++|||||||+|||+.++..+.+.|++++++ |. |||++|||+ .++.++||++++|++|+++..|
T Consensus 402 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~--tviivtHd~-~~~~~~~d~v~~l~~G~i~~~~ 477 (501)
T PRK10762 402 QKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAE-GL--SIILVSSEM-PEVLGMSDRILVMHEGRISGEF 477 (501)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHC-CC--EEEEEcCCH-HHHHhhCCEEEEEECCEEEEEe
Confidence 9999999999999999999999999999999999999999854 55 999999996 5789999999999999999998
Q ss_pred ChhhH
Q 044030 263 PATAA 267 (449)
Q Consensus 263 ~~~~~ 267 (449)
+++++
T Consensus 478 ~~~~~ 482 (501)
T PRK10762 478 TREQA 482 (501)
T ss_pred ccccC
Confidence 87643
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=322.49 Aligned_cols=196 Identities=27% Similarity=0.443 Sum_probs=165.6
Q ss_pred EEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCC--CCCCHHHHHHHHHh
Q 044030 64 GYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLI--TTLTVKEAVYYSAQ 141 (449)
Q Consensus 64 ~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~--~~lTv~e~l~~~~~ 141 (449)
|++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++.....+.++|++|++.++ ..+|+.||+.++..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~ 77 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPA---KGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRT 77 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccc
Confidence 578999999999999999999999999998774 8999999987533345699999998764 34799999987532
Q ss_pred ccCC-CCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 044030 142 LQLP-DTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIA 220 (449)
Q Consensus 142 ~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~ 220 (449)
.... .........+++.++++.+++.+..++++.+||||||||++||+||+.+|+++||||||+|||+.++..+.+.|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~ 157 (223)
T TIGR03771 78 GHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFI 157 (223)
T ss_pred cccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 1100 001122334568889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 221 KLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 221 ~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
+++++ |. |||++||++ .++.++||+++++ +|++++.|+++++
T Consensus 158 ~~~~~-~~--tvii~sH~~-~~~~~~~d~i~~l-~G~i~~~~~~~~~ 199 (223)
T TIGR03771 158 ELAGA-GT--AILMTTHDL-AQAMATCDRVVLL-NGRVIADGTPQQL 199 (223)
T ss_pred HHHHc-CC--EEEEEeCCH-HHHHHhCCEEEEE-CCEEEeecCHHHh
Confidence 99743 55 999999996 5788999999999 8999999988765
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=365.83 Aligned_cols=210 Identities=26% Similarity=0.385 Sum_probs=173.9
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.++++||++.| . .+++.+|+|+|++|++||.+||+||||||||||+++|+|+++|. +|+|.+||.+...
T Consensus 341 ~i~~~~vsf~y-~---~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~ 413 (582)
T PRK11176 341 DIEFRNVTFTY-P---GKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDID---EGEILLDGHDLRDYTLA 413 (582)
T ss_pred eEEEEEEEEec-C---CCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCC---CceEEECCEEhhhcCHH
Confidence 59999999983 2 12367999999999999999999999999999999999999874 8999999987532
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchh-------hCccC----CCCChH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDA-------MNTRI----RRLSGG 180 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~~----~~LSgG 180 (449)
.++.++||||++.+|+. |++||+.++.. ...+. +++.++++..|+.+. .|+.+ .+||||
T Consensus 414 ~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~----~~~~~----~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGG 484 (582)
T PRK11176 414 SLRNQVALVSQNVHLFND-TIANNIAYART----EQYSR----EQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGG 484 (582)
T ss_pred HHHhhceEEccCceeecc-hHHHHHhcCCC----CCCCH----HHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHH
Confidence 23679999999999986 99999977521 11222 334555555554332 23333 679999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 181 erqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
||||++|||||+++|++++||||||+||+.++..+++.|+++.+ ++|+|++||++ ...+.||+|++|++|+++.
T Consensus 485 qrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~----~~tvI~VtHr~--~~~~~~D~Ii~l~~g~i~e 558 (582)
T PRK11176 485 QRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK----NRTSLVIAHRL--STIEKADEILVVEDGEIVE 558 (582)
T ss_pred HHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC----CCEEEEEecch--HHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999863 34999999997 3567899999999999999
Q ss_pred ecChhhHH
Q 044030 261 FGPATAAN 268 (449)
Q Consensus 261 ~g~~~~~~ 268 (449)
.|+.+++.
T Consensus 559 ~g~~~~l~ 566 (582)
T PRK11176 559 RGTHAELL 566 (582)
T ss_pred eCCHHHHH
Confidence 99988764
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=364.68 Aligned_cols=207 Identities=21% Similarity=0.308 Sum_probs=175.4
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.++++|+++.| . +++.+|+|+|+++++||.+||+|+||||||||+|+|+|+++|. +|+|.+||.+...
T Consensus 340 ~i~~~~v~f~y-~----~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~ 411 (592)
T PRK10790 340 RIDIDNVSFAY-R----DDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT---EGEIRLDGRPLSSLSHS 411 (592)
T ss_pred eEEEEEEEEEe-C----CCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEhhhCCHH
Confidence 58999999983 2 2356999999999999999999999999999999999999874 8999999987642
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhh-------Cc----cCCCCChH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAM-------NT----RIRRLSGG 180 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~----~~~~LSgG 180 (449)
.++.++||+|++.+|+. |++||+.++.. .+ ++++.++++.+|+.+.. |+ ....||||
T Consensus 412 ~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~~------~~----d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGG 480 (592)
T PRK10790 412 VLRQGVAMVQQDPVVLAD-TFLANVTLGRD------IS----EEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVG 480 (592)
T ss_pred HHHhheEEEccCCccccc-hHHHHHHhCCC------CC----HHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHH
Confidence 24679999999999998 99999988631 12 23456666666655433 33 33679999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 181 erqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
||||++|||||+.+|++++||||||+||+.+...+.+.|+++++ ++|+|++||++ .....||+|++|++|+++.
T Consensus 481 qrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~----~~tvIivtHr~--~~l~~~D~ii~l~~G~i~~ 554 (592)
T PRK10790 481 QKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE----HTTLVVIAHRL--STIVEADTILVLHRGQAVE 554 (592)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC----CCEEEEEecch--HHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999863 34999999997 3566799999999999999
Q ss_pred ecChhhHH
Q 044030 261 FGPATAAN 268 (449)
Q Consensus 261 ~g~~~~~~ 268 (449)
.|+.+++.
T Consensus 555 ~G~~~~L~ 562 (592)
T PRK10790 555 QGTHQQLL 562 (592)
T ss_pred EcCHHHHH
Confidence 99998774
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=373.13 Aligned_cols=206 Identities=29% Similarity=0.417 Sum_probs=173.5
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.++++||+++| .. .++.+|+|+||+|++||.+||+||||||||||+|+|+|+++|. +|+|.+||.+...
T Consensus 451 ~I~~~nvsf~Y-~~---~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~ 523 (686)
T TIGR03797 451 AIEVDRVTFRY-RP---DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE---SGSVFYDGQDLAGLDVQ 523 (686)
T ss_pred eEEEEEEEEEc-CC---CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcCcCCHH
Confidence 68999999993 21 2457999999999999999999999999999999999999874 9999999998642
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhh-------Cc----cCCCCChH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAM-------NT----RIRRLSGG 180 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~----~~~~LSgG 180 (449)
.++.++||+|++.+|+. |++||+.++.. .+ ++++.++++..|+.+.. |+ ...+||||
T Consensus 524 ~lr~~i~~v~Q~~~lf~g-TI~eNi~~~~~------~~----~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGG 592 (686)
T TIGR03797 524 AVRRQLGVVLQNGRLMSG-SIFENIAGGAP------LT----LDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGG 592 (686)
T ss_pred HHHhccEEEccCCccCcc-cHHHHHhcCCC------CC----HHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHH
Confidence 24679999999999987 99999987532 12 23355666666665433 33 33679999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 181 erqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
||||++|||||+++|++++||||||+||+.+...+.+.|+++ ++ |+|++||+++ ..+.||+|++|++|+++.
T Consensus 593 QrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~--T~IiItHr~~--~i~~~D~Iivl~~G~iv~ 664 (686)
T TIGR03797 593 QRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL----KV--TRIVIAHRLS--TIRNADRIYVLDAGRVVQ 664 (686)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh----CC--eEEEEecChH--HHHcCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999875 34 9999999973 557799999999999999
Q ss_pred ecChhhHH
Q 044030 261 FGPATAAN 268 (449)
Q Consensus 261 ~g~~~~~~ 268 (449)
.|+.+++.
T Consensus 665 ~G~~~~Ll 672 (686)
T TIGR03797 665 QGTYDELM 672 (686)
T ss_pred ECCHHHHH
Confidence 99988764
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=359.18 Aligned_cols=214 Identities=20% Similarity=0.324 Sum_probs=180.7
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
..++++|+++. .+++|+||+|++||+++|+||||||||||+|+|+|+.+|. +|+|+++|++...
T Consensus 256 ~~l~~~~~~~~----------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~---~G~i~~~g~~~~~~~~ 322 (501)
T PRK11288 256 VRLRLDGLKGP----------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRT---AGQVYLDGKPIDIRSP 322 (501)
T ss_pred cEEEEeccccC----------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCC---CceEEECCEECCCCCH
Confidence 35788888632 4899999999999999999999999999999999999774 8999999986531
Q ss_pred ---ccCcEEEEcCCC---CCCCCCCHHHHHHHHHhccC-CCC--CCHHHHHHHHHHHHHHcCCc-hhhCccCCCCChHHH
Q 044030 113 ---AYGTSAYVTQDD---TLITTLTVKEAVYYSAQLQL-PDT--MPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSGGQK 182 (449)
Q Consensus 113 ---~~~~i~yv~Q~~---~l~~~lTv~e~l~~~~~~~~-~~~--~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGer 182 (449)
.++.++|++|++ .+++.+|+.||+.++..... ... ......++.+.++++.+++. +..++++..||||||
T Consensus 323 ~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~ 402 (501)
T PRK11288 323 RDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQ 402 (501)
T ss_pred HHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHH
Confidence 124699999996 48889999999987532110 001 11223345688999999994 788999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 183 RRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 183 qRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
|||+||+||+.+|++|||||||+|||+.++..+++.|++++++ |. |||++|||+ .++.++||++++|++|++++.|
T Consensus 403 qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~--tviivsHd~-~~~~~~~d~i~~l~~g~i~~~~ 478 (501)
T PRK11288 403 QKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQ-GV--AVLFVSSDL-PEVLGVADRIVVMREGRIAGEL 478 (501)
T ss_pred HHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhC-CC--EEEEECCCH-HHHHhhCCEEEEEECCEEEEEE
Confidence 9999999999999999999999999999999999999999854 55 999999996 5799999999999999999999
Q ss_pred Chhh
Q 044030 263 PATA 266 (449)
Q Consensus 263 ~~~~ 266 (449)
++++
T Consensus 479 ~~~~ 482 (501)
T PRK11288 479 AREQ 482 (501)
T ss_pred cccc
Confidence 7754
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=359.25 Aligned_cols=213 Identities=22% Similarity=0.304 Sum_probs=178.6
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
..|+++|++.. +|+|+||++++|++++|+||||||||||+++|+|+.+|. +|+|.++|.++..
T Consensus 267 ~~l~~~~l~~~-----------~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~ 332 (510)
T PRK15439 267 PVLTVEDLTGE-----------GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPAR---GGRIMLNGKEINALST 332 (510)
T ss_pred ceEEEeCCCCC-----------CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEECCCCCH
Confidence 35888888731 599999999999999999999999999999999998774 8999999986532
Q ss_pred ---ccCcEEEEcCCC---CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccCCCCChHHHHHH
Q 044030 113 ---AYGTSAYVTQDD---TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSGGQKRRV 185 (449)
Q Consensus 113 ---~~~~i~yv~Q~~---~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGerqRv 185 (449)
.++.++|++|++ .+++.+|+.||+.................++.++++++.+|+. +..+++++.|||||||||
T Consensus 333 ~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl 412 (510)
T PRK15439 333 AQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKV 412 (510)
T ss_pred HHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHH
Confidence 124699999984 4788899999986431110000011222345688999999997 788999999999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChh
Q 044030 186 SISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPAT 265 (449)
Q Consensus 186 ~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~ 265 (449)
+||+||+.+|++|||||||+|||+.++..+.+.|++++++ |. |||++|||+ .++.++||++++|++|++++.|.++
T Consensus 413 ~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~-g~--tiIivsHd~-~~i~~~~d~i~~l~~G~i~~~~~~~ 488 (510)
T PRK15439 413 LIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQ-NV--AVLFISSDL-EEIEQMADRVLVMHQGEISGALTGA 488 (510)
T ss_pred HHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhC-CC--EEEEECCCH-HHHHHhCCEEEEEECCEEEEEEccc
Confidence 9999999999999999999999999999999999999854 55 999999997 5799999999999999999988775
Q ss_pred h
Q 044030 266 A 266 (449)
Q Consensus 266 ~ 266 (449)
+
T Consensus 489 ~ 489 (510)
T PRK15439 489 A 489 (510)
T ss_pred c
Confidence 4
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-41 Score=310.20 Aligned_cols=170 Identities=28% Similarity=0.448 Sum_probs=151.4
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.++++|+++.| +|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~----------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~ 70 (182)
T cd03215 4 VLEVRGLSVKG----------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPA---SGEITLDGKPVTRRSPR 70 (182)
T ss_pred EEEEeccEEEe----------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccCHH
Confidence 58999999871 899999999999999999999999999999999999774 8999999987532
Q ss_pred --ccCcEEEEcCCC---CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHH
Q 044030 113 --AYGTSAYVTQDD---TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSI 187 (449)
Q Consensus 113 --~~~~i~yv~Q~~---~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i 187 (449)
..+.++|++|++ .+++.+|++||+.+... ||||||||++|
T Consensus 71 ~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~-----------------------------------LS~G~~qrl~l 115 (182)
T cd03215 71 DAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL-----------------------------------LSGGNQQKVVL 115 (182)
T ss_pred HHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh-----------------------------------cCHHHHHHHHH
Confidence 134699999995 57888999999976421 99999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeE
Q 044030 188 SIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQT 258 (449)
Q Consensus 188 a~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~i 258 (449)
|+||+.+|+++||||||+|||+.++..+.+.|++++++ |. |||++||++ +++.++||++++|++|++
T Consensus 116 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~--tiii~sh~~-~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 116 ARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADA-GK--AVLLISSEL-DELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHC-CC--EEEEEeCCH-HHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999999999999743 45 999999996 578899999999999974
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-41 Score=327.54 Aligned_cols=212 Identities=20% Similarity=0.282 Sum_probs=171.8
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.|+++|+++.| .. ..+.+|+|+||++++||+++|+|+||||||||+++|+|+++| .+|+|.++|.+...
T Consensus 19 ~i~~~~l~~~~-~~---~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~i~g~~i~~~~~~ 91 (257)
T cd03288 19 EIKIHDLCVRY-EN---NLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDI---FDGKIVIDGIDISKLPLH 91 (257)
T ss_pred eEEEEEEEEEe-CC---CCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCC---CCCeEEECCEEhhhCCHH
Confidence 58999999983 21 125699999999999999999999999999999999999876 48999999987532
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHH-----HHHHHHHHHc--CCchhhCccCCCCChHHHHH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKK-----ERAEVTIREM--GLQDAMNTRIRRLSGGQKRR 184 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~~~~LSgGerqR 184 (449)
..+.++|++|++.+++. |++||+..... ....... ..+.++++.+ |++...+..+..||||||||
T Consensus 92 ~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~------~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qr 164 (257)
T cd03288 92 TLRSRLSIILQDPILFSG-SIRFNLDPECK------CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQL 164 (257)
T ss_pred HHhhhEEEECCCCccccc-HHHHhcCcCCC------CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHH
Confidence 13569999999988875 99999853210 1111111 1233445555 66666677788999999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecCh
Q 044030 185 VSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264 (449)
Q Consensus 185 v~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~ 264 (449)
++||+||+.+|+++||||||+|||+.++..+.+.|+++. + +. |||++||++. .+. .||++++|++|+++..|++
T Consensus 165 l~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~-~~--tiii~sh~~~-~~~-~~dri~~l~~G~i~~~g~~ 238 (257)
T cd03288 165 FCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-A-DR--TVVTIAHRVS-TIL-DADLVLVLSRGILVECDTP 238 (257)
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-C-CC--EEEEEecChH-HHH-hCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999875 3 44 9999999974 555 4999999999999999998
Q ss_pred hhHH
Q 044030 265 TAAN 268 (449)
Q Consensus 265 ~~~~ 268 (449)
+++.
T Consensus 239 ~~~~ 242 (257)
T cd03288 239 ENLL 242 (257)
T ss_pred HHHH
Confidence 7664
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-41 Score=314.54 Aligned_cols=197 Identities=24% Similarity=0.363 Sum_probs=163.4
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.++++|+++.| .. ..+.+|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.+...
T Consensus 6 ~l~~~~l~~~~-~~---~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~ 78 (207)
T cd03369 6 EIEVENLSVRY-AP---DLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAE---EGKIEIDGIDISTIPLE 78 (207)
T ss_pred eEEEEEEEEEe-CC---CCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCeEEECCEEhHHCCHH
Confidence 48899999983 21 1246999999999999999999999999999999999998774 8999999987521
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEI 191 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL 191 (449)
..+.++|++|++.+++. |++||+.+.. .... +.+.+.++ .++++..|||||+||++|||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~-tv~~~l~~~~------~~~~----~~~~~~l~-------~~~~~~~LS~G~~qrv~laral 140 (207)
T cd03369 79 DLRSSLTIIPQDPTLFSG-TIRSNLDPFD------EYSD----EEIYGALR-------VSEGGLNLSQGQRQLLCLARAL 140 (207)
T ss_pred HHHhhEEEEecCCcccCc-cHHHHhcccC------CCCH----HHHHHHhh-------ccCCCCcCCHHHHHHHHHHHHH
Confidence 13569999999988874 9999996531 1111 12333333 4678899999999999999999
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecCh
Q 044030 192 LTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264 (449)
Q Consensus 192 ~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~ 264 (449)
+.+|+++||||||+|||+.++..+++.|++++ + |. |+|++||++. ++.. ||++++|++|+++..|++
T Consensus 141 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~--tiii~th~~~-~~~~-~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 141 LKRPRVLVLDEATASIDYATDALIQKTIREEF-T-NS--TILTIAHRLR-TIID-YDKILVMDAGEVKEYDHP 207 (207)
T ss_pred hhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C-CC--EEEEEeCCHH-HHhh-CCEEEEEECCEEEecCCC
Confidence 99999999999999999999999999999985 3 44 9999999974 5654 999999999999988763
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=311.25 Aligned_cols=175 Identities=33% Similarity=0.557 Sum_probs=151.9
Q ss_pred EEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc-----
Q 044030 39 TWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA----- 113 (449)
Q Consensus 39 ~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~----- 113 (449)
+++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+....
T Consensus 1 ~~~~l~~~~------~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~---~G~v~~~g~~~~~~~~~~~ 71 (180)
T cd03214 1 EVENLSVGY------GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS---SGEILLDGKDLASLSPKEL 71 (180)
T ss_pred CeeEEEEEE------CCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCcCCHHHH
Confidence 468899873 2356999999999999999999999999999999999998774 89999999865310
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh
Q 044030 114 YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT 193 (449)
Q Consensus 114 ~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~ 193 (449)
.+.++|++| +++.+|+.+..++.+..||||||||++|||||+.
T Consensus 72 ~~~i~~~~q-------------------------------------~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~ 114 (180)
T cd03214 72 ARKIAYVPQ-------------------------------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQ 114 (180)
T ss_pred HHHHhHHHH-------------------------------------HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 123555555 6777888888889999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
+|+++||||||+|||+.++..+.+.|++++++.+. |||++||++ .++.++||++++|++|++++.|
T Consensus 115 ~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~--tiii~sh~~-~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 115 EPPILLLDEPTSHLDIAHQIELLELLRRLARERGK--TVVMVLHDL-NLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999754455 999999996 4778999999999999998654
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-41 Score=309.09 Aligned_cols=174 Identities=27% Similarity=0.455 Sum_probs=151.3
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----c
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----A 113 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----~ 113 (449)
++++|+++.| . + ..+.+|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.+... .
T Consensus 1 i~~~~~~~~~-~-~--~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 73 (178)
T cd03247 1 LSINNVSFSY-P-E--QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ---QGEITLDGVPVSDLEKAL 73 (178)
T ss_pred CEEEEEEEEe-C-C--CCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCEEHHHHHHHH
Confidence 4689999983 2 1 1236999999999999999999999999999999999998774 8999999986531 1
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh
Q 044030 114 YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT 193 (449)
Q Consensus 114 ~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~ 193 (449)
.+.++|++|++.+++ .|++||+ +..||||||||++||+||+.
T Consensus 74 ~~~i~~~~q~~~~~~-~tv~~~i-------------------------------------~~~LS~G~~qrv~laral~~ 115 (178)
T cd03247 74 SSLISVLNQRPYLFD-TTLRNNL-------------------------------------GRRFSGGERQRLALARILLQ 115 (178)
T ss_pred HhhEEEEccCCeeec-ccHHHhh-------------------------------------cccCCHHHHHHHHHHHHHhc
Confidence 356999999988876 6998886 67899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
+|++++|||||+|||+.++..+++.|++++ + +. |||++||++. ++ ..||++++|++|++++.|
T Consensus 116 ~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~-~~--tii~~sh~~~-~~-~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 116 DAPIVLLDEPTVGLDPITERQLLSLIFEVL-K-DK--TLIWITHHLT-GI-EHMDKILFLENGKIIMQG 178 (178)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHc-C-CC--EEEEEecCHH-HH-HhCCEEEEEECCEEEecC
Confidence 999999999999999999999999999985 3 44 9999999974 55 479999999999998764
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-41 Score=335.71 Aligned_cols=186 Identities=28% Similarity=0.496 Sum_probs=165.7
Q ss_pred EECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCH
Q 044030 74 IMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPK 150 (449)
Q Consensus 74 IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~ 150 (449)
|+|||||||||||++|+|+.+|+ +|+|.++|++... ..+.++|++|++.+++.+||.||+.|+...+ ..+.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~---~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~ 74 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPD---SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KVPR 74 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CCCH
Confidence 68999999999999999999774 8999999987532 2357999999999999999999999986542 2334
Q ss_pred HHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCe
Q 044030 151 SDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGR 230 (449)
Q Consensus 151 ~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~ 230 (449)
.+.+++++++++.++|.+..++++.+|||||||||+|||||+.+|+++||||||+|||+.++..+.+.|++++++.|.
T Consensus 75 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~-- 152 (325)
T TIGR01187 75 AEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGI-- 152 (325)
T ss_pred HHHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCC--
Confidence 445567899999999999999999999999999999999999999999999999999999999999999999866565
Q ss_pred EEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 231 TIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 231 tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
|||++||++ .++..+||++++|++|+++..|+++++.
T Consensus 153 tiiivTHd~-~e~~~~~d~i~vl~~G~i~~~g~~~~~~ 189 (325)
T TIGR01187 153 TFVFVTHDQ-EEAMTMSDRIAIMRKGKIAQIGTPEEIY 189 (325)
T ss_pred EEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999996 5789999999999999999999998764
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=372.51 Aligned_cols=209 Identities=26% Similarity=0.394 Sum_probs=172.1
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
..|+++||+++| .. ..+.+|+|+|++|++||.+||+||||||||||+|+|+|+++|. +|+|.+||.+...
T Consensus 476 ~~I~~~~vsf~y-~~---~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~ 548 (710)
T TIGR03796 476 GYVELRNITFGY-SP---LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPR 548 (710)
T ss_pred CeEEEEEEEEec-CC---CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEeHHHCCH
Confidence 368999999983 21 2457999999999999999999999999999999999999874 8999999998632
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch-----------hhCccCCCCCh
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD-----------AMNTRIRRLSG 179 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----------~~~~~~~~LSg 179 (449)
.++.++||+|++.+|+. |++||+.++.. ..+. +++.+.++..++.+ .......+|||
T Consensus 549 ~~lr~~i~~v~Q~~~lf~g-Ti~eNi~l~~~-----~~~~----~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSG 618 (710)
T TIGR03796 549 EVLANSVAMVDQDIFLFEG-TVRDNLTLWDP-----TIPD----ADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSG 618 (710)
T ss_pred HHHHhheeEEecCChhhhc-cHHHHhhCCCC-----CCCH----HHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCH
Confidence 24679999999999976 99999976421 1222 23444455444433 33334467999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEE
Q 044030 180 GQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTV 259 (449)
Q Consensus 180 GerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv 259 (449)
|||||++|||||+++|++++||||||+||+.+...+.+.|++ .++ |+|++||+++ ....||+|++|++|+++
T Consensus 619 GQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~----~~~--T~IiitHrl~--~i~~~D~Iivl~~G~i~ 690 (710)
T TIGR03796 619 GQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR----RGC--TCIIVAHRLS--TIRDCDEIIVLERGKVV 690 (710)
T ss_pred HHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh----cCC--EEEEEecCHH--HHHhCCEEEEEeCCEEE
Confidence 999999999999999999999999999999999999999975 234 9999999973 45679999999999999
Q ss_pred EecChhhHHH
Q 044030 260 YFGPATAANE 269 (449)
Q Consensus 260 ~~g~~~~~~~ 269 (449)
..|+.+++.+
T Consensus 691 ~~G~~~~Ll~ 700 (710)
T TIGR03796 691 QRGTHEELWA 700 (710)
T ss_pred EecCHHHHHH
Confidence 9999988753
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=344.04 Aligned_cols=210 Identities=28% Similarity=0.425 Sum_probs=176.3
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc--
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-- 112 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-- 112 (449)
+-.|+|+||+++|. .+++||+++||+|++||-+||+|+|||||||++|+|.++.. .+|+|++||.++..
T Consensus 349 ~~~I~F~dV~f~y~-----~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d----~sG~I~IdG~dik~~~ 419 (591)
T KOG0057|consen 349 GGSIEFDDVHFSYG-----PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD----YSGSILIDGQDIKEVS 419 (591)
T ss_pred CCcEEEEeeEEEeC-----CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc----cCCcEEECCeeHhhhC
Confidence 34599999999831 34559999999999999999999999999999999999985 48999999998642
Q ss_pred ---ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchh-----------hCccCCCCC
Q 044030 113 ---AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDA-----------MNTRIRRLS 178 (449)
Q Consensus 113 ---~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-----------~~~~~~~LS 178 (449)
.++.|||||||..||.+ ||.+|+.++.. ..+. +++.+..+..|+.+. ...+...||
T Consensus 420 ~~SlR~~Ig~VPQd~~LFnd-TIl~NI~YGn~-----sas~----eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LS 489 (591)
T KOG0057|consen 420 LESLRQSIGVVPQDSVLFND-TILYNIKYGNP-----SASD----EEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLS 489 (591)
T ss_pred hHHhhhheeEeCCcccccch-hHHHHhhcCCC-----CcCH----HHHHHHHHHcCcHHHHHhccccchhhHhhcccccc
Confidence 24679999999999987 99999998742 1222 334555566655443 334446799
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeE
Q 044030 179 GGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQT 258 (449)
Q Consensus 179 gGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~i 258 (449)
|||||||+||||++++|+|+++|||||.||..+..++++.+.... . |+|+|++.|+. ....-||+|++|++|++
T Consensus 490 GGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~--~--~rTvI~IvH~l--~ll~~~DkI~~l~nG~v 563 (591)
T KOG0057|consen 490 GGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVM--S--GRTVIMIVHRL--DLLKDFDKIIVLDNGTV 563 (591)
T ss_pred cchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhc--C--CCeEEEEEecc--hhHhcCCEEEEEECCee
Confidence 999999999999999999999999999999999999999999954 3 45999999996 47788999999999999
Q ss_pred EEecChhhHHH
Q 044030 259 VYFGPATAANE 269 (449)
Q Consensus 259 v~~g~~~~~~~ 269 (449)
...|+-+++..
T Consensus 564 ~e~gth~ell~ 574 (591)
T KOG0057|consen 564 KEYGTHSELLA 574 (591)
T ss_pred EEeccHHHHhh
Confidence 99999988764
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=356.65 Aligned_cols=214 Identities=28% Similarity=0.485 Sum_probs=179.0
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc--
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-- 112 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-- 112 (449)
.-.|+|+||+|.| +. +.+.+||+|+||+|+|||++||+||||+||||+.++|-.++.| .+|+|.+||.|+..
T Consensus 463 ~G~IeF~~VsFaY-P~--Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~P---tsG~IllDG~~i~~~~ 536 (716)
T KOG0058|consen 463 QGVIEFEDVSFAY-PT--RPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDP---TSGRILLDGVPISDIN 536 (716)
T ss_pred cceEEEEEeeeec-CC--CCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCC---CCCeEEECCeehhhcC
Confidence 3468999999994 32 2467899999999999999999999999999999999999987 49999999998642
Q ss_pred ---ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHH-----HHHHHHHHcCCchhhCccC----CCCChH
Q 044030 113 ---AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKE-----RAEVTIREMGLQDAMNTRI----RRLSGG 180 (449)
Q Consensus 113 ---~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~~~~----~~LSgG 180 (449)
-+++||+|.|+|.+|.. ||+|||.|+.. ..+.++... .+.+.+. ++.+-.|+.+ ..||||
T Consensus 537 ~~~lr~~Ig~V~QEPvLFs~-sI~eNI~YG~~-----~~t~e~i~~AAk~ANah~FI~--~~p~gY~T~VGEkG~qLSGG 608 (716)
T KOG0058|consen 537 HKYLRRKIGLVGQEPVLFSG-SIRENIAYGLD-----NATDEEIEAAAKMANAHEFIT--NFPDGYNTVVGEKGSQLSGG 608 (716)
T ss_pred HHHHHHHeeeeeccceeecc-cHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHHH--hCccccccccCCccccccch
Confidence 13689999999999998 99999999865 223333222 2223333 4445555555 589999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 181 erqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
||||++|||||+.||.||||||.||+||..+...+-+.|.++.+ ++|||++.|..+ ..+.+|+|+++++|++++
T Consensus 609 QKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~----~rTVlvIAHRLS--TV~~Ad~Ivvi~~G~V~E 682 (716)
T KOG0058|consen 609 QKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ----GRTVLVIAHRLS--TVRHADQIVVIDKGRVVE 682 (716)
T ss_pred HHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc----CCeEEEEehhhh--HhhhccEEEEEcCCeEEe
Confidence 99999999999999999999999999999999999999999874 349999999974 567899999999999999
Q ss_pred ecChhhHH
Q 044030 261 FGPATAAN 268 (449)
Q Consensus 261 ~g~~~~~~ 268 (449)
.|+-+++.
T Consensus 683 ~G~h~eLl 690 (716)
T KOG0058|consen 683 MGTHDELL 690 (716)
T ss_pred cccHHHHh
Confidence 99887775
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-41 Score=360.44 Aligned_cols=210 Identities=28% Similarity=0.479 Sum_probs=178.1
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
..++++||++.| .. +.+.+|+|+||++++||.+||+||||||||||+++|+|+++|. +|+|.+||.+...
T Consensus 337 ~~i~~~~v~f~y-~~---~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~---~G~I~i~g~~i~~~~~ 409 (574)
T PRK11160 337 VSLTLNNVSFTY-PD---QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADYSE 409 (574)
T ss_pred CeEEEEEEEEEC-CC---CCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCH
Confidence 469999999983 21 2356999999999999999999999999999999999999874 8999999987532
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCc----------cCCCCChH
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNT----------RIRRLSGG 180 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----------~~~~LSgG 180 (449)
.++.++||+|++.+|+. |++||+.++.. .. .++.+.+.++..++.+..++ ....||||
T Consensus 410 ~~~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~~-----~~----~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgG 479 (574)
T PRK11160 410 AALRQAISVVSQRVHLFSA-TLRDNLLLAAP-----NA----SDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGG 479 (574)
T ss_pred HHHHhheeEEcccchhhcc-cHHHHhhcCCC-----cc----CHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHH
Confidence 23579999999999986 99999987531 11 23456778888888766543 34679999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 181 erqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
||||++|||||+++|++++||||||+||+.++..+.+.|+++.+ ++|+|+++|+++ . ...||++++|++|+++.
T Consensus 480 qrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~----~~tviiitHr~~-~-~~~~d~i~~l~~G~i~~ 553 (574)
T PRK11160 480 EQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQ----NKTVLMITHRLT-G-LEQFDRICVMDNGQIIE 553 (574)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC----CCEEEEEecChh-H-HHhCCEEEEEeCCeEEE
Confidence 99999999999999999999999999999999999999999863 449999999974 4 45699999999999999
Q ss_pred ecChhhHH
Q 044030 261 FGPATAAN 268 (449)
Q Consensus 261 ~g~~~~~~ 268 (449)
.|+.+++.
T Consensus 554 ~g~~~~l~ 561 (574)
T PRK11160 554 QGTHQELL 561 (574)
T ss_pred eCCHHHHH
Confidence 99987764
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-41 Score=359.24 Aligned_cols=215 Identities=26% Similarity=0.399 Sum_probs=178.0
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
..++++|+++.| . .+++.+|+|+|+++++||.++|+||||||||||+++|+|+++|. +|+|.+||.+...
T Consensus 315 ~~i~~~~v~~~y-~---~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~i~~~~~ 387 (544)
T TIGR01842 315 GHLSVENVTIVP-P---GGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPT---SGSVRLDGADLKQWDR 387 (544)
T ss_pred CeEEEEEEEEEc-C---CCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEehhhCCH
Confidence 359999999983 2 12357999999999999999999999999999999999999774 8999999987532
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHH-----HHHHHHHHHc--CCchhhCccCCCCChHHHH
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKK-----ERAEVTIREM--GLQDAMNTRIRRLSGGQKR 183 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~~~~LSgGerq 183 (449)
.++.++||+|++.+++. |++||+.+... ..+.++.. ...+++++.+ |++...+.....|||||||
T Consensus 388 ~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~-----~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~q 461 (544)
T TIGR01842 388 ETFGKHIGYLPQDVELFPG-TVAENIARFGE-----NADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQ 461 (544)
T ss_pred HHHhhheEEecCCcccccc-cHHHHHhccCC-----CCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHH
Confidence 23579999999999987 99999975321 12222221 1234556666 6666667778899999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
|++|||||+++|++++|||||+|||+.++..+.+.|+++.. .+ +|+|++||+++ ..+.||++++|++|++++.|+
T Consensus 462 rl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~--~tvi~ith~~~--~~~~~d~i~~l~~G~i~~~g~ 536 (544)
T TIGR01842 462 RIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKA-RG--ITVVVITHRPS--LLGCVDKILVLQDGRIARFGE 536 (544)
T ss_pred HHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhh-CC--CEEEEEeCCHH--HHHhCCEEEEEECCEEEeeCC
Confidence 99999999999999999999999999999999999999863 34 49999999973 457899999999999999999
Q ss_pred hhhHH
Q 044030 264 ATAAN 268 (449)
Q Consensus 264 ~~~~~ 268 (449)
.+++.
T Consensus 537 ~~~l~ 541 (544)
T TIGR01842 537 RDEVL 541 (544)
T ss_pred HHHHh
Confidence 87664
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=320.51 Aligned_cols=209 Identities=26% Similarity=0.398 Sum_probs=187.0
Q ss_pred ccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc----cCcEEEEc-CCCCCCCC
Q 044030 55 SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA----YGTSAYVT-QDDTLITT 129 (449)
Q Consensus 55 ~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~----~~~i~yv~-Q~~~l~~~ 129 (449)
...+++|+||+|++|++++++|||||||||+||+|+|++.|. +|.|.++|..+... -+++++|+ |...++..
T Consensus 36 ~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~---~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wd 112 (325)
T COG4586 36 SIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPT---SGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWD 112 (325)
T ss_pred hhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccC---CCeEEecCcCcchhHHHHHHHHHHHhhhhheeeee
Confidence 456999999999999999999999999999999999999874 99999999864321 14566664 55678888
Q ss_pred CCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 044030 130 LTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDS 209 (449)
Q Consensus 130 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~ 209 (449)
+.+.|.+......+ ..+.+..+++.+.+.+.|+|+...+.+++.||-|||+|+.||.+|+++|++|||||||-|||.
T Consensus 113 lp~~ds~~v~~~Iy---~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV 189 (325)
T COG4586 113 LPALDSLEVLKLIY---EIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDV 189 (325)
T ss_pred chhhhhHHHHHHHH---hCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcch
Confidence 88999988776665 567888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHHHHHH
Q 044030 210 AASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANEFFA 272 (449)
Q Consensus 210 ~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~~~f~ 272 (449)
.++..|.+.|++..++.+. ||+++||+. +.+..+||||++|+.|+++|.|+.+++.+-|.
T Consensus 190 ~aq~~ir~Flke~n~~~~a--TVllTTH~~-~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~ 249 (325)
T COG4586 190 NAQANIREFLKEYNEERQA--TVLLTTHIF-DDIATLCDRVLLIDQGQLVFDGTLAQLQEQFG 249 (325)
T ss_pred hHHHHHHHHHHHHHHhhCc--eEEEEecch-hhHHHhhhheEEeeCCcEeecccHHHHHHHhC
Confidence 9999999999999988866 999999996 58999999999999999999999998876553
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=346.96 Aligned_cols=209 Identities=27% Similarity=0.431 Sum_probs=177.6
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc---
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA--- 113 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~--- 113 (449)
.++++||+|+| .. ...++|+|+||++++||.+||+|+||||||||++.|+|.++|+ +|+|.+||.++...
T Consensus 336 ~l~~~~vsF~y-~~---~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~---~G~i~~~g~~~~~l~~~ 408 (573)
T COG4987 336 ALELRNVSFTY-PG---QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDEQ 408 (573)
T ss_pred eeeeccceeec-CC---CccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCC---CCeeeECCcChhhCChh
Confidence 78999999994 21 3347999999999999999999999999999999999999874 99999999875321
Q ss_pred --cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCc-----------cCCCCChH
Q 044030 114 --YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNT-----------RIRRLSGG 180 (449)
Q Consensus 114 --~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~-----------~~~~LSgG 180 (449)
++.+++++|...+|.. |+++|+.++.. +.+ ++.+.++++.+||++.... -.+.||||
T Consensus 409 ~~~e~i~vl~Qr~hlF~~-Tlr~NL~lA~~-----~As----DEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGG 478 (573)
T COG4987 409 ALRETISVLTQRVHLFSG-TLRDNLRLANP-----DAS----DEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGG 478 (573)
T ss_pred hHHHHHhhhccchHHHHH-HHHHHHhhcCC-----CCC----HHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCch
Confidence 2468999999999988 99999987642 122 2345666777777654433 34789999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 181 erqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
||||++|||+|++|.++++|||||.|||+.+..++++.|.+-++ |+|+|++||+.. -.+.||+|++|++|+++.
T Consensus 479 E~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~----~kTll~vTHrL~--~le~~drIivl~~Gkiie 552 (573)
T COG4987 479 ERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE----GKTLLMVTHRLR--GLERMDRIIVLDNGKIIE 552 (573)
T ss_pred HHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc----CCeEEEEecccc--cHhhcCEEEEEECCeeee
Confidence 99999999999999999999999999999999999999999874 559999999975 367899999999999999
Q ss_pred ecChhhHH
Q 044030 261 FGPATAAN 268 (449)
Q Consensus 261 ~g~~~~~~ 268 (449)
.|...++.
T Consensus 553 ~G~~~~Ll 560 (573)
T COG4987 553 EGTHAELL 560 (573)
T ss_pred cCCHHhhh
Confidence 99988775
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=326.24 Aligned_cols=230 Identities=28% Similarity=0.421 Sum_probs=202.0
Q ss_pred CCCCCeeEEEEeeEEEEeecC-----cccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE
Q 044030 31 NEDDGVFLTWKDLTVTIVSNG-----KKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILI 105 (449)
Q Consensus 31 ~~~~~~~l~~~nls~~~~~~~-----~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~ 105 (449)
+...++.++.+|+.+.|...+ .-....++++||+++++||.+||+|.||||||||=.+|.+++++ +|+|.|
T Consensus 270 ~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s----~G~I~F 345 (534)
T COG4172 270 PEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS----QGEIRF 345 (534)
T ss_pred CCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc----CceEEE
Confidence 345678899999999842211 11235799999999999999999999999999999999999876 599999
Q ss_pred CCEeccc--------ccCcEEEEcCCC--CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccC
Q 044030 106 NGHKKAL--------AYGTSAYVTQDD--TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRI 174 (449)
Q Consensus 106 ~g~~~~~--------~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~ 174 (449)
+|+++.. .++++-.||||+ .+-|.|||.+-+.-+...+.+ ..+.++..+++.+.|+.+||+ ...++++
T Consensus 346 ~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~r~RYP 424 (534)
T COG4172 346 DGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPATRNRYP 424 (534)
T ss_pred CCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhHhhcCC
Confidence 9987641 134688999997 588999999999998877644 467888999999999999997 5789999
Q ss_pred CCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEee
Q 044030 175 RRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLS 254 (449)
Q Consensus 175 ~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~ 254 (449)
+++|||||||++||||++.+|++++||||||+||-..+.+|+++|+.+.++.|. +-+++|||. .-+..+||+|+||+
T Consensus 425 hEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~L--sYLFISHDL-~VvrAl~~~viVm~ 501 (534)
T COG4172 425 HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGL--SYLFISHDL-AVVRALCHRVIVMR 501 (534)
T ss_pred cccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCC--eEEEEeccH-HHHHHhhceEEEEe
Confidence 999999999999999999999999999999999999999999999999988876 999999996 57899999999999
Q ss_pred CCeEEEecChhhHH
Q 044030 255 AGQTVYFGPATAAN 268 (449)
Q Consensus 255 ~G~iv~~g~~~~~~ 268 (449)
+|+||++|+.+++.
T Consensus 502 ~GkiVE~G~~~~if 515 (534)
T COG4172 502 DGKIVEQGPTEAVF 515 (534)
T ss_pred CCEEeeeCCHHHHh
Confidence 99999999998763
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=305.47 Aligned_cols=168 Identities=30% Similarity=0.528 Sum_probs=147.1
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
++++|+++.| .. +.+.+++|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 1 i~~~~l~~~~-~~---~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 73 (173)
T cd03246 1 LEVENVSFRY-PG---AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPT---SGRVRLDGADISQWDPNE 73 (173)
T ss_pred CEEEEEEEEc-CC---CCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCeEEECCEEcccCCHHH
Confidence 4689999983 21 2246999999999999999999999999999999999998774 8999999987531
Q ss_pred ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHH
Q 044030 113 AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEIL 192 (449)
Q Consensus 113 ~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~ 192 (449)
..+.++|++|++.+++. ||+||+ ||||||||++||+||+
T Consensus 74 ~~~~i~~~~q~~~~~~~-tv~~~l----------------------------------------LS~G~~qrv~la~al~ 112 (173)
T cd03246 74 LGDHVGYLPQDDELFSG-SIAENI----------------------------------------LSGGQRQRLGLARALY 112 (173)
T ss_pred HHhheEEECCCCccccC-cHHHHC----------------------------------------cCHHHHHHHHHHHHHh
Confidence 13569999999988875 999886 9999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeE
Q 044030 193 TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQT 258 (449)
Q Consensus 193 ~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~i 258 (449)
.+|+++||||||+|||+.++..+.+.|+++++ .|. |||++||++ ..+ ..||++++|++|++
T Consensus 113 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~~--tii~~sh~~-~~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 113 GNPRILVLDEPNSHLDVEGERALNQAIAALKA-AGA--TRIVIAHRP-ETL-ASADRILVLEDGRV 173 (173)
T ss_pred cCCCEEEEECCccccCHHHHHHHHHHHHHHHh-CCC--EEEEEeCCH-HHH-HhCCEEEEEECCCC
Confidence 99999999999999999999999999999974 455 999999997 455 68999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-41 Score=361.77 Aligned_cols=214 Identities=29% Similarity=0.435 Sum_probs=176.7
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
..++++|+++.| . +++++|+|+||++++||.+||+||||||||||++.|+|+++| .+|+|.+||.++..
T Consensus 327 ~~I~f~~vsf~y-~----~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~---~~G~I~idg~dI~~i~~ 398 (567)
T COG1132 327 GSIEFENVSFSY-P----GKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDP---TSGEILIDGIDIRDISL 398 (567)
T ss_pred CeEEEEEEEEEc-C----CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC---CCCeEEECCEehhhcCH
Confidence 359999999983 2 357899999999999999999999999999999999999987 48999999988642
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHH-----HHHHHHHc--CCchhhCccCCCCChHHHH
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKER-----AEVTIREM--GLQDAMNTRIRRLSGGQKR 183 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~-----v~~~l~~l--gL~~~~~~~~~~LSgGerq 183 (449)
.++.++||+|++.+|.. |++||+.++..- .++++..+. +.+.++.+ |++.........|||||||
T Consensus 399 ~~lr~~I~~V~Qd~~LF~~-TI~~NI~~g~~~-----at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQ 472 (567)
T COG1132 399 DSLRKRIGIVSQDPLLFSG-TIRENIALGRPD-----ATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQ 472 (567)
T ss_pred HHHHHhccEEcccceeecc-cHHHHHhcCCCC-----CCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHH
Confidence 24679999999999995 999999987431 233332222 23344444 4444444444689999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
|++||||++.+|++++||||||+||+.+...+.+.++++. + ++|+|+++|.++ .+.. ||+|++|++|++++.|+
T Consensus 473 rlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~---~rT~iiIaHRls-ti~~-aD~IiVl~~G~i~e~G~ 546 (567)
T COG1132 473 RLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-K---GRTTLIIAHRLS-TIKN-ADRIIVLDNGRIVERGT 546 (567)
T ss_pred HHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-c---CCEEEEEeccHh-HHHh-CCEEEEEECCEEEEecC
Confidence 9999999999999999999999999999999999999886 3 449999999974 4555 99999999999999999
Q ss_pred hhhHHH
Q 044030 264 ATAANE 269 (449)
Q Consensus 264 ~~~~~~ 269 (449)
.+++..
T Consensus 547 h~eLl~ 552 (567)
T COG1132 547 HEELLA 552 (567)
T ss_pred HHHHHH
Confidence 988764
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-41 Score=368.80 Aligned_cols=210 Identities=27% Similarity=0.455 Sum_probs=174.8
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.++++||+++| . .+.+++|+|+|++|++||.+||+||||||||||+|+|+|+++|. +|+|.+||.+...
T Consensus 463 ~I~~~~vsf~Y-~---~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~l~~~~~~ 535 (694)
T TIGR03375 463 EIEFRNVSFAY-P---GQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDPA 535 (694)
T ss_pred eEEEEEEEEEe-C---CCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHH
Confidence 58999999994 2 12457999999999999999999999999999999999999874 8999999987532
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch-----------hhCccCCCCChH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD-----------AMNTRIRRLSGG 180 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----------~~~~~~~~LSgG 180 (449)
.++.++||+|++.+|+. |++||+.++.. ..+. +++.+.++..++.+ ........||||
T Consensus 536 ~lr~~i~~v~Q~~~lf~~-TI~eNi~~~~~-----~~~~----~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgG 605 (694)
T TIGR03375 536 DLRRNIGYVPQDPRLFYG-TLRDNIALGAP-----YADD----EEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGG 605 (694)
T ss_pred HHHhccEEECCChhhhhh-hHHHHHhCCCC-----CCCH----HHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHH
Confidence 23579999999999987 99999987521 1222 23444455554433 333344689999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 181 erqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
||||++|||||+.+|++++||||||+||+.+...+.+.|+++.+ ++|+|++||+++ ..+.||+|++|++|++++
T Consensus 606 QrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~----~~T~iiItHrl~--~~~~~D~iivl~~G~i~e 679 (694)
T TIGR03375 606 QRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA----GKTLVLVTHRTS--LLDLVDRIIVMDNGRIVA 679 (694)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC----CCEEEEEecCHH--HHHhCCEEEEEeCCEEEe
Confidence 99999999999999999999999999999999999999999863 349999999973 567899999999999999
Q ss_pred ecChhhHHH
Q 044030 261 FGPATAANE 269 (449)
Q Consensus 261 ~g~~~~~~~ 269 (449)
.|+.+++.+
T Consensus 680 ~G~~~eLl~ 688 (694)
T TIGR03375 680 DGPKDQVLE 688 (694)
T ss_pred eCCHHHHHH
Confidence 999888754
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=364.78 Aligned_cols=215 Identities=28% Similarity=0.448 Sum_probs=175.4
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc--
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-- 112 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-- 112 (449)
...++++||+|+| +. +.+..||+|+||.|++|+.+||+|||||||||++++|.+++.|. +|+|++||.++..
T Consensus 348 ~g~ief~nV~FsY-Ps--Rpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~---~G~V~idG~di~~~~ 421 (1228)
T KOG0055|consen 348 KGEIEFRNVCFSY-PS--RPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPT---SGEVLIDGEDIRNLN 421 (1228)
T ss_pred ccceEEEEEEecC-CC--CCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CceEEEcCccchhcc
Confidence 4579999999994 32 23568999999999999999999999999999999999999884 9999999987642
Q ss_pred ---ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHH-----HHHHHHHcCCchhhCccC----CCCChH
Q 044030 113 ---AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKER-----AEVTIREMGLQDAMNTRI----RRLSGG 180 (449)
Q Consensus 113 ---~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~~~~----~~LSgG 180 (449)
.+..||.|.|+|.+|.. |++||+.|+.. +.+.++..+. +.+.+. .|.+-.++.+ -.||||
T Consensus 422 ~~~lr~~iglV~QePvlF~~-tI~eNI~~G~~-----dat~~~i~~a~k~ana~~fi~--~lp~g~~T~vge~g~qLSGG 493 (1228)
T KOG0055|consen 422 LKWLRSQIGLVSQEPVLFAT-TIRENIRYGKP-----DATREEIEEAAKAANAHDFIL--KLPDGYDTLVGERGVQLSGG 493 (1228)
T ss_pred hHHHHhhcCeeeechhhhcc-cHHHHHhcCCC-----cccHHHHHHHHHHccHHHHHH--hhHHhhcccccCCCCCCChH
Confidence 24579999999988875 99999988642 1222222211 122222 2333444444 469999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 181 erqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
||||++|||||+.+|+|||||||||+||+.+...+.+.|.++.+ |+|.|+++|+++ .+.+ +|++++|++|++++
T Consensus 494 QKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~----grTTivVaHRLS-tIrn-aD~I~v~~~G~IvE 567 (1228)
T KOG0055|consen 494 QKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASK----GRTTIVVAHRLS-TIRN-ADKIAVMEEGKIVE 567 (1228)
T ss_pred HHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhc----CCeEEEEeeehh-hhhc-cCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999874 559999999974 5655 99999999999999
Q ss_pred ecChhhHHH
Q 044030 261 FGPATAANE 269 (449)
Q Consensus 261 ~g~~~~~~~ 269 (449)
.|+.+++..
T Consensus 568 ~G~h~ELi~ 576 (1228)
T KOG0055|consen 568 QGTHDELIA 576 (1228)
T ss_pred ecCHHHHHh
Confidence 999998864
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=336.28 Aligned_cols=214 Identities=25% Similarity=0.360 Sum_probs=192.4
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc---
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA--- 113 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~--- 113 (449)
.++++++++.| ++..+++||||+|++||+.||+|.||||||||+++|.|.+.|+ +|+|.++|++....
T Consensus 4 ~l~~~~itK~f------~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~---~GeI~v~G~~v~~~sP~ 74 (501)
T COG3845 4 ALEMRGITKRF------PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD---SGEIRVDGKEVRIKSPR 74 (501)
T ss_pred eEEEeccEEEc------CCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCC---cceEEECCEEeccCCHH
Confidence 58999999983 5678999999999999999999999999999999999999885 99999999975421
Q ss_pred ---cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHH
Q 044030 114 ---YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIE 190 (449)
Q Consensus 114 ---~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~a 190 (449)
+..||+|+|++.|++++||.||+.++.........+.+..+++++++.+.+||.-..|.++.+||-||||||.|.++
T Consensus 75 dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKa 154 (501)
T COG3845 75 DAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKA 154 (501)
T ss_pred HHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHH
Confidence 34699999999999999999999998754222234567788899999999999988999999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 191 ILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 191 L~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
|..+|++|||||||+-|-|....++++.|++++++ |+|||++||-. .|+.++||++.+|.+|+++...+
T Consensus 155 Lyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~---G~tIi~ITHKL-~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 155 LYRGARLLILDEPTAVLTPQEADELFEILRRLAAE---GKTIIFITHKL-KEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHC---CCEEEEEeccH-HHHHHhhCeeEEEeCCeEEeeec
Confidence 99999999999999999999999999999999954 45999999996 68999999999999999887655
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=359.65 Aligned_cols=208 Identities=26% Similarity=0.417 Sum_probs=171.9
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.++++|+++.| . +++.+|+|+|+++++||.++|+|+||||||||+|+|+|+++|. +|+|.+||.+...
T Consensus 334 ~I~~~~vsf~y-~----~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~---~G~I~i~g~~i~~~~~~ 405 (588)
T PRK13657 334 AVEFDDVSFSY-D----NSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQ---SGRILIDGTDIRTVTRA 405 (588)
T ss_pred eEEEEEEEEEe-C----CCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEhhhCCHH
Confidence 58999999983 2 2356999999999999999999999999999999999999874 8999999987542
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCC-----------chhhCccCCCCChH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGL-----------QDAMNTRIRRLSGG 180 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-----------~~~~~~~~~~LSgG 180 (449)
.++.++||+|++.+|+. |++||+.++.. ..+.+ ++.+.++..++ +.........||||
T Consensus 406 ~~r~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~-----~~~d~----~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgG 475 (588)
T PRK13657 406 SLRRNIAVVFQDAGLFNR-SIEDNIRVGRP-----DATDE----EMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGG 475 (588)
T ss_pred HHHhheEEEecCcccccc-cHHHHHhcCCC-----CCCHH----HHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHH
Confidence 13679999999999986 99999987521 12222 23334444443 33333334679999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 181 erqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
||||++|||||+++|++++||||||+||+.++..+.+.|+++.+ ++|+|++||++ ...+.||++++|++|+++.
T Consensus 476 q~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~----~~tvIiitHr~--~~~~~~D~ii~l~~G~i~~ 549 (588)
T PRK13657 476 ERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMK----GRTTFIIAHRL--STVRNADRILVFDNGRVVE 549 (588)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhc----CCEEEEEEecH--HHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999998853 34999999997 3567899999999999999
Q ss_pred ecChhhHH
Q 044030 261 FGPATAAN 268 (449)
Q Consensus 261 ~g~~~~~~ 268 (449)
.|+.+++.
T Consensus 550 ~g~~~~l~ 557 (588)
T PRK13657 550 SGSFDELV 557 (588)
T ss_pred eCCHHHHH
Confidence 99987764
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-41 Score=367.98 Aligned_cols=209 Identities=26% Similarity=0.365 Sum_probs=172.6
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.++++||++.| . +++.+|+|+|++|++|+.+||+||||||||||+++|+|+++|. +|+|++||.+...
T Consensus 473 ~I~~~~vsf~y-~----~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~ 544 (708)
T TIGR01193 473 DIVINDVSYSY-G----YGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDIDRH 544 (708)
T ss_pred cEEEEEEEEEc-C----CCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCC---CcEEEECCEEHHHcCHH
Confidence 58999999983 2 2457999999999999999999999999999999999999874 8999999987532
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch-----------hhCccCCCCChH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD-----------AMNTRIRRLSGG 180 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----------~~~~~~~~LSgG 180 (449)
.++.++||+|++.+|+. |++||+.++... ..+. +++.+.++..++.+ .......+||||
T Consensus 545 ~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~~----~~~~----~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgG 615 (708)
T TIGR01193 545 TLRQFINYLPQEPYIFSG-SILENLLLGAKE----NVSQ----DEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGG 615 (708)
T ss_pred HHHHheEEEecCceehhH-HHHHHHhccCCC----CCCH----HHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHH
Confidence 23579999999999987 999999876311 1222 23444444444432 233334679999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 181 erqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
||||++||||++++|++++||||||+||+.+...+.+.|+++ + ++ |+|++||+++ ....||+|++|++|+++.
T Consensus 616 QrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~-~~--T~IiitHr~~--~~~~~D~i~~l~~G~i~~ 688 (708)
T TIGR01193 616 QKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--Q-DK--TIIFVAHRLS--VAKQSDKIIVLDHGKIIE 688 (708)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--c-CC--EEEEEecchH--HHHcCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999875 2 34 9999999973 567899999999999999
Q ss_pred ecChhhHHH
Q 044030 261 FGPATAANE 269 (449)
Q Consensus 261 ~g~~~~~~~ 269 (449)
.|+.+++.+
T Consensus 689 ~G~~~~L~~ 697 (708)
T TIGR01193 689 QGSHDELLD 697 (708)
T ss_pred ECCHHHHHh
Confidence 999887653
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=310.88 Aligned_cols=195 Identities=27% Similarity=0.407 Sum_probs=153.8
Q ss_pred EEEEeeEEEEeecCccc-ccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCc
Q 044030 38 LTWKDLTVTIVSNGKKG-SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGT 116 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~ 116 (449)
++++||++.| . ++.+ .+.+|+|+||+|++||+++|+||||||||||+++|+|+.+|. +|+|.++| .
T Consensus 1 l~~~~l~~~~-~-~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~---~G~i~~~g--------~ 67 (204)
T cd03250 1 ISVEDASFTW-D-SGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKL---SGSVSVPG--------S 67 (204)
T ss_pred CEEeEEEEec-C-CCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCC---CCeEEEcC--------E
Confidence 4689999983 2 1000 136999999999999999999999999999999999998774 89999998 4
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHH-----HHHHHHHc--CCchhhCccCCCCChHHHHHHHHHH
Q 044030 117 SAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKER-----AEVTIREM--GLQDAMNTRIRRLSGGQKRRVSISI 189 (449)
Q Consensus 117 i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~-----v~~~l~~l--gL~~~~~~~~~~LSgGerqRv~ia~ 189 (449)
++|++|++.+++ .|++||+.+.... ......+. +.+.++.+ |++...+..+..||||||||++||+
T Consensus 68 i~~~~q~~~l~~-~t~~enl~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~lar 140 (204)
T cd03250 68 IAYVSQEPWIQN-GTIRENILFGKPF------DEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLAR 140 (204)
T ss_pred EEEEecCchhcc-CcHHHHhccCCCc------CHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHH
Confidence 899999998885 6999999875321 11111111 11222222 3444556778999999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCe
Q 044030 190 EILTRPKLLFLDEPTSGLDSAASYYVMS-RIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQ 257 (449)
Q Consensus 190 aL~~~P~llllDEPtsgLD~~~~~~i~~-~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~ 257 (449)
||+.+|++++|||||+|||+.++..+.+ +++.++++ |. |||++||++ ..+.. ||++++|++|+
T Consensus 141 al~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~-~~--tvi~~sh~~-~~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 141 AVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLN-NK--TRILVTHQL-QLLPH-ADQIVVLDNGR 204 (204)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccC-CC--EEEEEeCCH-HHHhh-CCEEEEEeCCC
Confidence 9999999999999999999999999998 46666543 44 999999997 45665 99999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=313.02 Aligned_cols=195 Identities=20% Similarity=0.234 Sum_probs=163.6
Q ss_pred ceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEE-ECCEecccccCcEEEEcCCCCCCCCCCHHHH
Q 044030 57 SILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKIL-INGHKKALAYGTSAYVTQDDTLITTLTVKEA 135 (449)
Q Consensus 57 ~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~-~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~ 135 (449)
++|+||||+|++||+++|+||||||||||+++|+|+.+|+ +|+|. ++|... .+.+++.+++.+|+.||
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~---sG~i~~~~~~~~--------~~~~~~~l~~~ltv~en 69 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPD---EGDFIGLRGDAL--------PLGANSFILPGLTGEEN 69 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CCCEEEecCcee--------ccccccccCCcCcHHHH
Confidence 3799999999999999999999999999999999998774 89997 777532 13345678899999999
Q ss_pred HHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHH
Q 044030 136 VYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYV 215 (449)
Q Consensus 136 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i 215 (449)
+.+....+ ..+..+. ...+.+.++++...++++++||||||||++||+||+.+|+++||||||+++|+.++..+
T Consensus 70 l~~~~~~~---~~~~~~~---~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~ 143 (213)
T PRK15177 70 ARMMASLY---GLDGDEF---SHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRM 143 (213)
T ss_pred HHHHHHHc---CCCHHHH---HHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHH
Confidence 99876543 1222222 23344567888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHHHHHHH
Q 044030 216 MSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANEFFAF 273 (449)
Q Consensus 216 ~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~~~f~~ 273 (449)
.+.|.+..+ +. |+|++||++ ..+..+||++++|++|++++.|+.++...+++.
T Consensus 144 ~~~l~~~~~--~~--~ii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 196 (213)
T PRK15177 144 QAALACQLQ--QK--GLIVLTHNP-RLIKEHCHAFGVLLHGKITMCEDLAQATALFEQ 196 (213)
T ss_pred HHHHHHHhh--CC--cEEEEECCH-HHHHHhcCeeEEEECCeEEEeCCHHHHHHHHHH
Confidence 998866543 23 899999997 478889999999999999999999888776554
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-40 Score=349.57 Aligned_cols=209 Identities=22% Similarity=0.379 Sum_probs=175.3
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcE
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTS 117 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i 117 (449)
|+++|++++| +++.+|+|+||+|++||+++|+||||||||||||+|+|+++|+ +|+|.++|. ..+
T Consensus 2 l~i~~ls~~~------~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~~~------~~i 66 (530)
T PRK15064 2 LSTANITMQF------GAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPS---AGNVSLDPN------ERL 66 (530)
T ss_pred EEEEEEEEEe------CCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCC------CEE
Confidence 7899999983 3467999999999999999999999999999999999999774 899999873 358
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHh-c-----------cCCC-C----------------CCHHHHHHHHHHHHHHcCCch
Q 044030 118 AYVTQDDTLITTLTVKEAVYYSAQ-L-----------QLPD-T----------------MPKSDKKERAEVTIREMGLQD 168 (449)
Q Consensus 118 ~yv~Q~~~l~~~lTv~e~l~~~~~-~-----------~~~~-~----------------~~~~~~~~~v~~~l~~lgL~~ 168 (449)
+|++|++.+++.+||.|++.++.. . ..+. . ....+.+.++.++++.+|+.+
T Consensus 67 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~ 146 (530)
T PRK15064 67 GKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPE 146 (530)
T ss_pred EEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCh
Confidence 999999999999999999987531 0 0000 0 000122356788999999986
Q ss_pred hh-CccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhc
Q 044030 169 AM-NTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLF 247 (449)
Q Consensus 169 ~~-~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~ 247 (449)
.. ++++.+|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|++ .|. |||++||++ ..+.++|
T Consensus 147 ~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~--tiiivsHd~-~~~~~~~ 219 (530)
T PRK15064 147 EQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE----RNS--TMIIISHDR-HFLNSVC 219 (530)
T ss_pred hHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh----CCC--eEEEEeCCH-HHHHhhc
Confidence 44 678999999999999999999999999999999999999999999999863 344 999999996 5788999
Q ss_pred CeEEEeeCCeE-EEecChhhHH
Q 044030 248 HNLCLLSAGQT-VYFGPATAAN 268 (449)
Q Consensus 248 D~v~~l~~G~i-v~~g~~~~~~ 268 (449)
|++++|++|++ ++.|++++..
T Consensus 220 d~i~~l~~g~i~~~~g~~~~~~ 241 (530)
T PRK15064 220 THMADLDYGELRVYPGNYDEYM 241 (530)
T ss_pred ceEEEEeCCEEEEecCCHHHHH
Confidence 99999999999 5889887553
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=365.70 Aligned_cols=210 Identities=27% Similarity=0.449 Sum_probs=170.1
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
-.++++||++.| .. ..++.+|+|+||++++||.+||+||||||||||+|+|+|+++|. +|+|.+||.+...
T Consensus 477 ~~I~~~nVsf~Y-~~--~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~ 550 (711)
T TIGR00958 477 GLIEFQDVSFSY-PN--RPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPT---GGQVLLDGVPLVQYDH 550 (711)
T ss_pred CeEEEEEEEEEC-CC--CCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCH
Confidence 358999999983 21 12357999999999999999999999999999999999999874 8999999998632
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchh-----------hCccCCCCCh
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDA-----------MNTRIRRLSG 179 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-----------~~~~~~~LSg 179 (449)
.++.++||+|++.+|+. |++||+.++.. ..+ ++++.++++..++.+. .+....+|||
T Consensus 551 ~~lr~~i~~v~Q~~~lF~g-TIreNI~~g~~-----~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSG 620 (711)
T TIGR00958 551 HYLHRQVALVGQEPVLFSG-SVRENIAYGLT-----DTP----DEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSG 620 (711)
T ss_pred HHHHhhceEEecCcccccc-CHHHHHhcCCC-----CCC----HHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCH
Confidence 23579999999999986 99999987632 122 2334555555555432 2333467999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEE
Q 044030 180 GQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTV 259 (449)
Q Consensus 180 GerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv 259 (449)
|||||++||||++++|++++||||||+||+.+...+.+ .. . .. ++|+|++||+++ ..+.||+|++|++|+++
T Consensus 621 GQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~-~--~~--~~TvIiItHrl~--~i~~aD~IivL~~G~iv 692 (711)
T TIGR00958 621 GQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR-S--RA--SRTVLLIAHRLS--TVERADQILVLKKGSVV 692 (711)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh-c--cC--CCeEEEEeccHH--HHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999988 22 2 22 449999999973 46779999999999999
Q ss_pred EecChhhHHH
Q 044030 260 YFGPATAANE 269 (449)
Q Consensus 260 ~~g~~~~~~~ 269 (449)
..|+.+++.+
T Consensus 693 e~Gt~~eL~~ 702 (711)
T TIGR00958 693 EMGTHKQLME 702 (711)
T ss_pred EeeCHHHHHh
Confidence 9999987753
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=301.04 Aligned_cols=230 Identities=27% Similarity=0.341 Sum_probs=197.3
Q ss_pred eeEEEEeeEEEEeecCcccc-cceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc--
Q 044030 36 VFLTWKDLTVTIVSNGKKGS-SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-- 112 (449)
++|+++||+++ + .+ +.||++||++|++||+.+||||||||||||.++|+|.-.. ..++|+|.++|+++..
T Consensus 2 ~~L~I~dLhv~-v-----~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y-~Vt~G~I~~~GedI~~l~ 74 (251)
T COG0396 2 MMLEIKDLHVE-V-----EGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKY-EVTEGEILFDGEDILELS 74 (251)
T ss_pred ceeEEeeeEEE-e-----cCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCc-eEecceEEECCcccccCC
Confidence 46899999998 4 33 5899999999999999999999999999999999997544 3579999999998531
Q ss_pred ----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch-hhCccC-CCCChHHHHHHH
Q 044030 113 ----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD-AMNTRI-RRLSGGQKRRVS 186 (449)
Q Consensus 113 ----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~-~~LSgGerqRv~ 186 (449)
.+..+...+|.|.-+|..|+.+.|..+............+....+++.++.+++++ .+++.+ -++|||||||..
T Consensus 75 ~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~E 154 (251)
T COG0396 75 PDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNE 154 (251)
T ss_pred HhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHH
Confidence 23568899999999999999999998876543211112355677889999999986 788888 589999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhc--CeEEEeeCCeEEEecCh
Q 044030 187 ISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLF--HNLCLLSAGQTVYFGPA 264 (449)
Q Consensus 187 ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~--D~v~~l~~G~iv~~g~~ 264 (449)
|+..++.+|++.+||||-||||..+-+.|.+.+..++.+ |. +++++||.. .+..+. |+|.+|.+|+|+..|.+
T Consensus 155 ilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~-~~--~~liITHy~--rll~~i~pD~vhvl~~GrIv~sG~~ 229 (251)
T COG0396 155 ILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREE-GR--GVLIITHYQ--RLLDYIKPDKVHVLYDGRIVKSGDP 229 (251)
T ss_pred HHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcC-CC--eEEEEecHH--HHHhhcCCCEEEEEECCEEEecCCH
Confidence 999999999999999999999999999999999999854 44 999999984 678877 99999999999999999
Q ss_pred hhHHHHHHHCCCCC
Q 044030 265 TAANEFFAFNGFPC 278 (449)
Q Consensus 265 ~~~~~~f~~~g~~~ 278 (449)
++...++..|+.|
T Consensus 230 -el~~~le~~gy~~ 242 (251)
T COG0396 230 -ELAEELEEKGYDW 242 (251)
T ss_pred -HHHHHHHHhchHH
Confidence 7777788777754
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=357.55 Aligned_cols=210 Identities=28% Similarity=0.431 Sum_probs=174.9
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.++++||+++| .. .++.+|+|+|+++++||.++|+|+||||||||+++|+|+++|. +|+|.+||.+...
T Consensus 330 ~i~~~~v~f~y-~~---~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~---~G~I~i~g~~i~~~~~~ 402 (571)
T TIGR02203 330 DVEFRNVTFRY-PG---RDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPD---SGQILLDGHDLADYTLA 402 (571)
T ss_pred eEEEEEEEEEc-CC---CCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCeEEECCEeHHhcCHH
Confidence 59999999983 21 2357999999999999999999999999999999999999874 8999999987532
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhh-------CccC----CCCChH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAM-------NTRI----RRLSGG 180 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~~----~~LSgG 180 (449)
.++.++|++|++.+|+. |++||+.++.. ...+ ++++.++++.+|+.+.. |+.+ ..||||
T Consensus 403 ~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~----~~~~----~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgG 473 (571)
T TIGR02203 403 SLRRQVALVSQDVVLFND-TIANNIAYGRT----EQAD----RAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGG 473 (571)
T ss_pred HHHhhceEEccCcccccc-cHHHHHhcCCC----CCCC----HHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHH
Confidence 23579999999999987 99999976531 0122 23455666666664432 3333 579999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 181 erqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
||||++||||++.+|++++||||||+||+.++..+++.|+++++ ++|+|++||++ .....||+|++|++|+++.
T Consensus 474 qrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~----~~tiIiitH~~--~~~~~~D~ii~l~~g~i~~ 547 (571)
T TIGR02203 474 QRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQ----GRTTLVIAHRL--STIEKADRIVVMDDGRIVE 547 (571)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhC----CCEEEEEehhh--HHHHhCCEEEEEeCCEEEe
Confidence 99999999999999999999999999999999999999999863 44999999997 4678899999999999999
Q ss_pred ecChhhHH
Q 044030 261 FGPATAAN 268 (449)
Q Consensus 261 ~g~~~~~~ 268 (449)
.|+.+++.
T Consensus 548 ~g~~~~l~ 555 (571)
T TIGR02203 548 RGTHNELL 555 (571)
T ss_pred eCCHHHHH
Confidence 99988764
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-40 Score=351.57 Aligned_cols=209 Identities=23% Similarity=0.331 Sum_probs=176.7
Q ss_pred eeEEEEeeEEEEeecCccc-ccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccccc
Q 044030 36 VFLTWKDLTVTIVSNGKKG-SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAY 114 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~ 114 (449)
.+|+++||++.| + ++.+|+||||+|++|++++|+|||||||||||++|+|+++|+ +|+|.+++.
T Consensus 5 ~~l~i~~l~~~y------~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~---~G~i~~~~~------ 69 (556)
T PRK11819 5 YIYTMNRVSKVV------PPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEF---EGEARPAPG------ 69 (556)
T ss_pred EEEEEeeEEEEe------CCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCC------
Confidence 469999999983 3 467999999999999999999999999999999999999774 899999752
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHHhc-c------------CCCCCC--------------------HHHHHHHHHHHH
Q 044030 115 GTSAYVTQDDTLITTLTVKEAVYYSAQL-Q------------LPDTMP--------------------KSDKKERAEVTI 161 (449)
Q Consensus 115 ~~i~yv~Q~~~l~~~lTv~e~l~~~~~~-~------------~~~~~~--------------------~~~~~~~v~~~l 161 (449)
..+|||+|++.+++.+||.||+.++... + ...... ..+...++.+++
T Consensus 70 ~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 149 (556)
T PRK11819 70 IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAM 149 (556)
T ss_pred CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 3599999999999999999999875320 0 000000 001235678899
Q ss_pred HHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcH
Q 044030 162 REMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSS 241 (449)
Q Consensus 162 ~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~ 241 (449)
+.+|+.. .++++.+|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++. . |||++||++ .
T Consensus 150 ~~~gl~~-~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~----~--tviiisHd~-~ 221 (556)
T PRK11819 150 DALRCPP-WDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP----G--TVVAVTHDR-Y 221 (556)
T ss_pred HhCCCCc-ccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC----C--eEEEEeCCH-H
Confidence 9999964 799999999999999999999999999999999999999999999999998762 2 999999996 5
Q ss_pred HHHhhcCeEEEeeCCeEE-EecChhhH
Q 044030 242 EVFQLFHNLCLLSAGQTV-YFGPATAA 267 (449)
Q Consensus 242 ~i~~~~D~v~~l~~G~iv-~~g~~~~~ 267 (449)
.+..+||++++|++|+++ +.|+.++.
T Consensus 222 ~~~~~~d~i~~l~~g~i~~~~g~~~~~ 248 (556)
T PRK11819 222 FLDNVAGWILELDRGRGIPWEGNYSSW 248 (556)
T ss_pred HHHhhcCeEEEEeCCEEEEecCCHHHH
Confidence 788999999999999986 78887653
|
|
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=353.37 Aligned_cols=219 Identities=26% Similarity=0.394 Sum_probs=189.2
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.|+++|+++.| .. ..+.+.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++...
T Consensus 4 ~l~~~nl~~~y-~~-~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~i~~~~~~ 78 (648)
T PRK10535 4 LLELKDIRRSY-PS-GEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPT---SGTYRVAGQDVATLDAD 78 (648)
T ss_pred EEEEeeEEEEe-CC-CCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEcCcCCHH
Confidence 68999999983 21 112357999999999999999999999999999999999999774 8999999987532
Q ss_pred -----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHH
Q 044030 113 -----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSI 187 (449)
Q Consensus 113 -----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i 187 (449)
.++.++|++|++.+++.+|+.||+.+..... .....+.++++.++++.+||.+..++++..|||||+||++|
T Consensus 79 ~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~L 155 (648)
T PRK10535 79 ALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA---GLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSI 155 (648)
T ss_pred HHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHH
Confidence 1346999999999999999999998865432 22344556678899999999999999999999999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 188 SIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 188 a~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
||||+.+|++++|||||+|||+.++..+.+.|+++++ .|. |+|++||++. .+ ..||++++|++|++++.|++++.
T Consensus 156 AraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~-~g~--tilivsH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~~ 230 (648)
T PRK10535 156 ARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRD-RGH--TVIIVTHDPQ-VA-AQAERVIEIRDGEIVRNPPAQEK 230 (648)
T ss_pred HHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCC--EEEEECCCHH-HH-HhCCEEEEEECCEEEeecCcccc
Confidence 9999999999999999999999999999999999974 455 9999999963 44 57999999999999999998765
Q ss_pred H
Q 044030 268 N 268 (449)
Q Consensus 268 ~ 268 (449)
.
T Consensus 231 ~ 231 (648)
T PRK10535 231 V 231 (648)
T ss_pred c
Confidence 4
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=355.40 Aligned_cols=210 Identities=27% Similarity=0.422 Sum_probs=172.6
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.++++||++.| .. ..++.+|+|+||++++||.++|+||||||||||+|+|+|+++|. +|+|.+||.+.+.
T Consensus 337 ~i~~~~v~f~y-~~--~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~---~G~I~i~g~~i~~~~~~ 410 (576)
T TIGR02204 337 EIEFEQVNFAY-PA--RPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQ---SGRILLDGVDLRQLDPA 410 (576)
T ss_pred eEEEEEEEEEC-CC--CCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHH
Confidence 58999999983 21 12257999999999999999999999999999999999999874 8999999987532
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch-----------hhCccCCCCChH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD-----------AMNTRIRRLSGG 180 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----------~~~~~~~~LSgG 180 (449)
.++.++|+||++.+|+. |++||+.++.. ..+. +++.+.++..|+.+ ........||||
T Consensus 411 ~~~~~i~~~~Q~~~lf~~-Ti~~Ni~~~~~-----~~~~----~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgG 480 (576)
T TIGR02204 411 ELRARMALVPQDPVLFAA-SVMENIRYGRP-----DATD----EEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGG 480 (576)
T ss_pred HHHHhceEEccCCccccc-cHHHHHhcCCC-----CCCH----HHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHH
Confidence 13579999999999987 99999977521 1122 33445555555433 223334679999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 181 erqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
||||++||||++.+|++++||||||+||+.++..+++.|+++.+ ++|+|++||++ +....||++++|++|+++.
T Consensus 481 q~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~----~~t~IiitH~~--~~~~~~d~vi~l~~g~~~~ 554 (576)
T TIGR02204 481 QRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMK----GRTTLIIAHRL--ATVLKADRIVVMDQGRIVA 554 (576)
T ss_pred HHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhC----CCEEEEEecch--HHHHhCCEEEEEECCEEEe
Confidence 99999999999999999999999999999999999999999863 34999999997 3567899999999999999
Q ss_pred ecChhhHH
Q 044030 261 FGPATAAN 268 (449)
Q Consensus 261 ~g~~~~~~ 268 (449)
.|+.+++.
T Consensus 555 ~g~~~~l~ 562 (576)
T TIGR02204 555 QGTHAELI 562 (576)
T ss_pred eecHHHHH
Confidence 99987653
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-40 Score=305.50 Aligned_cols=190 Identities=23% Similarity=0.307 Sum_probs=160.3
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-ccCc
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-AYGT 116 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-~~~~ 116 (449)
|+++|++++| +++.+++ +||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.+... ..+.
T Consensus 2 l~~~~l~~~~------~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~ 71 (195)
T PRK13541 2 LSLHQLQFNI------EQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPS---SGNIYYKNCNINNIAKPY 71 (195)
T ss_pred eEEEEeeEEE------CCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCcccChhhhhh
Confidence 7899999983 2344555 99999999999999999999999999999998774 8999999987532 2245
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCC
Q 044030 117 SAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPK 196 (449)
Q Consensus 117 i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~ 196 (449)
++|++|+..+++.+||.||+.+....+ . ..+++.++++.+++.+..+++++.||||||||++||+|++.+|+
T Consensus 72 ~~~~~~~~~~~~~~tv~~~l~~~~~~~---~-----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~ 143 (195)
T PRK13541 72 CTYIGHNLGLKLEMTVFENLKFWSEIY---N-----SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSD 143 (195)
T ss_pred EEeccCCcCCCccCCHHHHHHHHHHhc---c-----cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCC
Confidence 899999988888899999998865332 1 13457788999999998999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeE
Q 044030 197 LLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNL 250 (449)
Q Consensus 197 llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v 250 (449)
+++|||||+|||+.++..+.+.|++.+ +.|. |||++||++. .+ ..+|-+
T Consensus 144 ~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~~--tiii~sh~~~-~i-~~~~~~ 192 (195)
T PRK13541 144 LWLLDEVETNLSKENRDLLNNLIVMKA-NSGG--IVLLSSHLES-SI-KSAQIL 192 (195)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHH-hCCC--EEEEEeCCcc-cc-chhhee
Confidence 999999999999999999999998765 3444 9999999974 33 446654
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=363.76 Aligned_cols=214 Identities=27% Similarity=0.444 Sum_probs=173.6
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
..++++||++.| . .+.+.+|+|+|+++++||.+||+|+||||||||+|+|+|+++|. +|+|.+||.+...
T Consensus 454 ~~i~~~~vsf~y-~---~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~---~G~I~idg~~i~~~~~ 526 (694)
T TIGR01846 454 GAITFENIRFRY-A---PDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQ---HGQVLVDGVDLAIADP 526 (694)
T ss_pred CeEEEEEEEEEc-C---CCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEehhhCCH
Confidence 369999999983 2 13356999999999999999999999999999999999999874 8999999997532
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHH-----HHHHHHHHc--CCchhhCccCCCCChHHHH
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKE-----RAEVTIREM--GLQDAMNTRIRRLSGGQKR 183 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~~~~~~~LSgGerq 183 (449)
.++.++||+|++.+|+. |++||+.++.. ..+.++..+ .+.+.++.+ |++...+....+|||||||
T Consensus 527 ~~~r~~i~~v~q~~~lf~~-ti~eNi~~~~~-----~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~q 600 (694)
T TIGR01846 527 AWLRRQMGVVLQENVLFSR-SIRDNIALCNP-----GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQ 600 (694)
T ss_pred HHHHHhCeEEccCCeehhh-hHHHHHhcCCC-----CCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHH
Confidence 13579999999999986 99999977421 122222111 122333333 4444444555789999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
|++|||||+++|++++||||||+||+.++..+.+.|+++. + ++|+|++||+++ . ...||++++|++|++++.|+
T Consensus 601 ri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~---~~t~i~itH~~~-~-~~~~d~ii~l~~G~i~~~g~ 674 (694)
T TIGR01846 601 RIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-R---GRTVIIIAHRLS-T-VRACDRIIVLEKGQIAESGR 674 (694)
T ss_pred HHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-C---CCEEEEEeCChH-H-HHhCCEEEEEeCCEEEEeCC
Confidence 9999999999999999999999999999999999999985 2 449999999973 3 46699999999999999999
Q ss_pred hhhHH
Q 044030 264 ATAAN 268 (449)
Q Consensus 264 ~~~~~ 268 (449)
.+++.
T Consensus 675 ~~~l~ 679 (694)
T TIGR01846 675 HEELL 679 (694)
T ss_pred HHHHH
Confidence 88764
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=310.01 Aligned_cols=195 Identities=24% Similarity=0.338 Sum_probs=156.7
Q ss_pred EEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc------
Q 044030 39 TWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL------ 112 (449)
Q Consensus 39 ~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~------ 112 (449)
.+.|+++.| . +.+.+|+|+||++++||+++|+|||||||||||++|+|+++|. +|+|.++|.+...
T Consensus 2 ~~~~~~~~~-~----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~ 73 (218)
T cd03290 2 QVTNGYFSW-G----SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTL---EGKVHWSNKNESEPSFEAT 73 (218)
T ss_pred eeeeeEEec-C----CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCccccccccccc
Confidence 466777772 1 2357999999999999999999999999999999999998764 8999999976421
Q ss_pred ---ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchh-----------hCccCCCCC
Q 044030 113 ---AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDA-----------MNTRIRRLS 178 (449)
Q Consensus 113 ---~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-----------~~~~~~~LS 178 (449)
.++.++|++|++.++ ..|++||+.+.... .. ....++++.+++.+. .++++..||
T Consensus 74 ~~~~~~~i~~~~q~~~~~-~~t~~~nl~~~~~~------~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS 142 (218)
T cd03290 74 RSRNRYSVAYAAQKPWLL-NATVEENITFGSPF------NK----QRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLS 142 (218)
T ss_pred chhhcceEEEEcCCCccc-cccHHHHHhhcCcC------CH----HHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCC
Confidence 124699999999887 56999999775311 11 123344555555432 356789999
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH--HHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCC
Q 044030 179 GGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMS--RIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAG 256 (449)
Q Consensus 179 gGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~--~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G 256 (449)
|||||||+||+||+.+|+++||||||+|||+.++..+++ +++.++ +.|. |||++||++. .+ ..||++++|++|
T Consensus 143 ~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~-~~~~--tii~~sH~~~-~~-~~~d~i~~l~~G 217 (218)
T cd03290 143 GGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQ-DDKR--TLVLVTHKLQ-YL-PHADWIIAMKDG 217 (218)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHh-cCCC--EEEEEeCChH-HH-hhCCEEEEecCC
Confidence 999999999999999999999999999999999999998 666665 4444 9999999974 55 579999999988
Q ss_pred e
Q 044030 257 Q 257 (449)
Q Consensus 257 ~ 257 (449)
.
T Consensus 218 ~ 218 (218)
T cd03290 218 S 218 (218)
T ss_pred C
Confidence 4
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=314.55 Aligned_cols=190 Identities=23% Similarity=0.302 Sum_probs=159.6
Q ss_pred ceeeeeeEEEe-----cCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCC
Q 044030 57 SILEDLTGYAK-----PGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLT 131 (449)
Q Consensus 57 ~iL~~vs~~i~-----~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lT 131 (449)
..++|++++++ +||+++|+||||||||||+++|+|+++|. +|+|.++|. .++|++|+...++.+|
T Consensus 8 ~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~---~G~i~~~g~-------~i~~~~q~~~~~~~~t 77 (246)
T cd03237 8 KTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPD---EGDIEIELD-------TVSYKPQYIKADYEGT 77 (246)
T ss_pred cccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CCeEEECCc-------eEEEecccccCCCCCC
Confidence 36666777665 79999999999999999999999999774 899999985 4899999988778889
Q ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 044030 132 VKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAA 211 (449)
Q Consensus 132 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~ 211 (449)
|.|++.+...... . ....+.++++.+++.+..++++..|||||||||+||+||+.+|+++||||||++||+.+
T Consensus 78 v~e~l~~~~~~~~----~---~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~ 150 (246)
T cd03237 78 VRDLLSSITKDFY----T---HPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQ 150 (246)
T ss_pred HHHHHHHHhhhcc----c---cHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 9999976533110 1 12245788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEE--EecChhh
Q 044030 212 SYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTV--YFGPATA 266 (449)
Q Consensus 212 ~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv--~~g~~~~ 266 (449)
+..+.+.|++++++.|. |||++||++ ..+..+||++++|+++..+ ..+++..
T Consensus 151 ~~~l~~~l~~~~~~~~~--tiiivsHd~-~~~~~~~d~i~~l~~~~~~~~~~~~~~~ 204 (246)
T cd03237 151 RLMASKVIRRFAENNEK--TAFVVEHDI-IMIDYLADRLIVFEGEPSVNGVANPPQS 204 (246)
T ss_pred HHHHHHHHHHHHHhcCC--EEEEEeCCH-HHHHHhCCEEEEEcCCCeeEEEeCCchH
Confidence 99999999999865555 999999996 5788899999999764333 3344444
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-40 Score=354.28 Aligned_cols=212 Identities=29% Similarity=0.386 Sum_probs=173.7
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.++++|+++.| . +++.+|+|+||++++||.++|+||||||||||+++|+|+++|. +|+|.+||.+...
T Consensus 334 ~i~~~~v~~~y-~----~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~~~~~~~~ 405 (585)
T TIGR01192 334 AVEFRHITFEF-A----NSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPT---VGQILIDGIDINTVTRE 405 (585)
T ss_pred eEEEEEEEEEC-C----CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCC---CCEEEECCEEhhhCCHH
Confidence 58999999983 2 2346999999999999999999999999999999999999874 8999999987532
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHH-----HHHHHHHc--CCchhhCccCCCCChHHHHH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKER-----AEVTIREM--GLQDAMNTRIRRLSGGQKRR 184 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~-----v~~~l~~l--gL~~~~~~~~~~LSgGerqR 184 (449)
.++.++||+|++.+++. |++||+.++.. ..+.++..+. ..+.+..+ |++...++....||||||||
T Consensus 406 ~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~-----~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qr 479 (585)
T TIGR01192 406 SLRKSIATVFQDAGLFNR-SIRENIRLGRE-----GATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQR 479 (585)
T ss_pred HHHhheEEEccCCccCcc-cHHHHHhcCCC-----CCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHH
Confidence 23579999999998875 99999987531 1222322221 12233333 55555666778999999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecCh
Q 044030 185 VSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264 (449)
Q Consensus 185 v~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~ 264 (449)
++|||||+.+|++++||||||+||+.++..+.+.|+++. + + +|||++||+++ .+ ..||++++|++|+++..|+.
T Consensus 480 l~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~-~--~tvI~isH~~~-~~-~~~d~i~~l~~G~i~~~g~~ 553 (585)
T TIGR01192 480 LAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR-K-N--RTTFIIAHRLS-TV-RNADLVLFLDQGRLIEKGSF 553 (585)
T ss_pred HHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-C-C--CEEEEEEcChH-HH-HcCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999885 3 4 49999999973 44 67999999999999999998
Q ss_pred hhHH
Q 044030 265 TAAN 268 (449)
Q Consensus 265 ~~~~ 268 (449)
+++.
T Consensus 554 ~~l~ 557 (585)
T TIGR01192 554 QELI 557 (585)
T ss_pred HHHH
Confidence 7664
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-40 Score=346.98 Aligned_cols=215 Identities=21% Similarity=0.319 Sum_probs=173.9
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
..|+++|+++.| +++.+|+|+||++++||+++|+||||||||||+|+|+|+.++ ..+|+|+++|++...
T Consensus 259 ~~l~~~~l~~~~------~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~--~~~G~i~~~g~~~~~~~~ 330 (490)
T PRK10938 259 PRIVLNNGVVSY------NDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQ--GYSNDLTLFGRRRGSGET 330 (490)
T ss_pred ceEEEeceEEEE------CCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCc--ccCCeEEEecccCCCCCC
Confidence 469999999983 345699999999999999999999999999999999997643 148999999975321
Q ss_pred ---ccCcEEEEcCCCCCCC--CCCHHHHHHHHHhc--cCCCCCCHHHHHHHHHHHHHHcCCch-hhCccCCCCChHHHHH
Q 044030 113 ---AYGTSAYVTQDDTLIT--TLTVKEAVYYSAQL--QLPDTMPKSDKKERAEVTIREMGLQD-AMNTRIRRLSGGQKRR 184 (449)
Q Consensus 113 ---~~~~i~yv~Q~~~l~~--~lTv~e~l~~~~~~--~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LSgGerqR 184 (449)
.++.++|++|++.+++ ..|+.+++.++... ...... ....+++++++++.+||.+ ..++++.+||||||||
T Consensus 331 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qr 409 (490)
T PRK10938 331 IWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAV-SDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRL 409 (490)
T ss_pred HHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCC-CHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHH
Confidence 1246999999876543 35777776543211 000011 1223456889999999997 8899999999999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHh-hcCeEEEeeCCeEEEec
Q 044030 185 VSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQ-LFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 185 v~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~-~~D~v~~l~~G~iv~~g 262 (449)
|+||+||+.+|++|||||||+|||+.++..+++.|++++++.+. |||++||++ +++.+ +||++++|++|++++.-
T Consensus 410 v~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~--tviivsHd~-~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 410 ALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGET--QLLFVSHHA-EDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred HHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCc--EEEEEecch-hhhhhhhheeEEEecCCceEEee
Confidence 99999999999999999999999999999999999999865323 799999997 46766 59999999999988754
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-40 Score=299.39 Aligned_cols=166 Identities=35% Similarity=0.579 Sum_probs=144.3
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
++++|+++.| . + ....+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 1 l~~~~l~~~~-~-~--~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~ 73 (171)
T cd03228 1 IEFKNVSFSY-P-G--RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT---SGEILIDGVDLRDLDLES 73 (171)
T ss_pred CEEEEEEEEc-C-C--CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CCEEEECCEEhhhcCHHH
Confidence 4688999983 1 1 1136999999999999999999999999999999999998774 8999999987531
Q ss_pred ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHH
Q 044030 113 AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEIL 192 (449)
Q Consensus 113 ~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~ 192 (449)
..+.++|++|++.+++ .|+.||+ |||||||||+||+||+
T Consensus 74 ~~~~i~~~~~~~~~~~-~t~~e~l----------------------------------------LS~G~~~rl~la~al~ 112 (171)
T cd03228 74 LRKNIAYVPQDPFLFS-GTIRENI----------------------------------------LSGGQRQRIAIARALL 112 (171)
T ss_pred HHhhEEEEcCCchhcc-chHHHHh----------------------------------------hCHHHHHHHHHHHHHh
Confidence 1246999999988776 5888886 9999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCe
Q 044030 193 TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQ 257 (449)
Q Consensus 193 ~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~ 257 (449)
.+|++++|||||+|||+.++..+.+.|++++ + +. |||++||++ .++.. ||++++|++|+
T Consensus 113 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~-~~--tii~~sh~~-~~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 113 RDPPILILDEATSALDPETEALILEALRALA-K-GK--TVIVIAHRL-STIRD-ADRIIVLDDGR 171 (171)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHhc-C-CC--EEEEEecCH-HHHHh-CCEEEEEcCCC
Confidence 9999999999999999999999999999986 3 34 999999997 46666 99999999885
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-40 Score=353.98 Aligned_cols=209 Identities=26% Similarity=0.356 Sum_probs=171.9
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.++++|+++.| . .+++.+|+|+|+++++|+.++|+||||||||||+++|+|+++|. +|+|.+||.+...
T Consensus 313 ~I~~~~v~~~y-~---~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~---~G~i~~~g~~~~~~~~~ 385 (569)
T PRK10789 313 ELDVNIRQFTY-P---QTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVS---EGDIRFHDIPLTKLQLD 385 (569)
T ss_pred cEEEEEEEEEC-C---CCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCEEEECCEEHhhCCHH
Confidence 58999999983 2 12357999999999999999999999999999999999999874 8999999987532
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCC-----------chhhCccCCCCChH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGL-----------QDAMNTRIRRLSGG 180 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-----------~~~~~~~~~~LSgG 180 (449)
.++.++|++|++.+|+. |++||+.++.. ..+.+ .+.+.++..++ +...+.....||||
T Consensus 386 ~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~-----~~~~~----~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgG 455 (569)
T PRK10789 386 SWRSRLAVVSQTPFLFSD-TVANNIALGRP-----DATQQ----EIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGG 455 (569)
T ss_pred HHHhheEEEccCCeeccc-cHHHHHhcCCC-----CCCHH----HHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHH
Confidence 13579999999999986 99999977531 12222 23334444443 33334445789999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 181 erqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
||||++|||||+++|++++|||||++||+.++..+.+.|+++. + |+|+|++||+++ ..+.||++++|++|+++.
T Consensus 456 q~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~---~~tii~itH~~~--~~~~~d~i~~l~~G~i~~ 529 (569)
T PRK10789 456 QKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-E---GRTVIISAHRLS--ALTEASEILVMQHGHIAQ 529 (569)
T ss_pred HHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-C---CCEEEEEecchh--HHHcCCEEEEEeCCEEEE
Confidence 9999999999999999999999999999999999999999985 3 449999999973 456799999999999999
Q ss_pred ecChhhHH
Q 044030 261 FGPATAAN 268 (449)
Q Consensus 261 ~g~~~~~~ 268 (449)
.|+.+++.
T Consensus 530 ~g~~~~l~ 537 (569)
T PRK10789 530 RGNHDQLA 537 (569)
T ss_pred ecCHHHHH
Confidence 99987764
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=346.54 Aligned_cols=203 Identities=25% Similarity=0.357 Sum_probs=175.3
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccC
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYG 115 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~ 115 (449)
..|+++||++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|. +
T Consensus 318 ~~l~~~~l~~~~------~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~---~G~i~~~~~------~ 382 (530)
T PRK15064 318 NALEVENLTKGF------DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPD---SGTVKWSEN------A 382 (530)
T ss_pred ceEEEEeeEEee------CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCc------e
Confidence 469999999983 3457999999999999999999999999999999999998774 899999874 3
Q ss_pred cEEEEcCCCC--CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccCCCCChHHHHHHHHHHHHH
Q 044030 116 TSAYVTQDDT--LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSGGQKRRVSISIEIL 192 (449)
Q Consensus 116 ~i~yv~Q~~~--l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGerqRv~ia~aL~ 192 (449)
.++|++|++. +++.+|+.|++.+... . ...++++.++++.+|+. +..++++.+|||||||||+||++|+
T Consensus 383 ~i~~~~q~~~~~~~~~~t~~~~~~~~~~---~-----~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~ 454 (530)
T PRK15064 383 NIGYYAQDHAYDFENDLTLFDWMSQWRQ---E-----GDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMM 454 (530)
T ss_pred EEEEEcccccccCCCCCcHHHHHHHhcc---C-----CccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHh
Confidence 5999999864 5667999999864211 0 11235678899999994 7889999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEE-EecChhhHH
Q 044030 193 TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTV-YFGPATAAN 268 (449)
Q Consensus 193 ~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv-~~g~~~~~~ 268 (449)
.+|++|||||||+|||+.++..+.+.|+++ +. |||++|||+ ..+..+||++++|++|+++ +.|++++..
T Consensus 455 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~--tvi~vsHd~-~~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 524 (530)
T PRK15064 455 QKPNVLVMDEPTNHMDMESIESLNMALEKY----EG--TLIFVSHDR-EFVSSLATRIIEITPDGVVDFSGTYEEYL 524 (530)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHC----CC--EEEEEeCCH-HHHHHhCCEEEEEECCeEEEcCCCHHHHH
Confidence 999999999999999999999999999876 23 999999996 5788999999999999998 888876553
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=344.74 Aligned_cols=214 Identities=25% Similarity=0.345 Sum_probs=177.0
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc--
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA-- 113 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~-- 113 (449)
..|+++|+++. . +.+|+||||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.+....
T Consensus 249 ~~i~~~~l~~~-~-------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~ 317 (491)
T PRK10982 249 VILEVRNLTSL-R-------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKS---AGTITLHGKKINNHNA 317 (491)
T ss_pred cEEEEeCcccc-c-------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCC---ccEEEECCEECCCCCH
Confidence 46899999885 1 35999999999999999999999999999999999999774 89999999875321
Q ss_pred ----cCcEEEEcCCC---CCCCCCCHHHHHHHHH-hccCC-CC-CCHHHHHHHHHHHHHHcCCc-hhhCccCCCCChHHH
Q 044030 114 ----YGTSAYVTQDD---TLITTLTVKEAVYYSA-QLQLP-DT-MPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSGGQK 182 (449)
Q Consensus 114 ----~~~i~yv~Q~~---~l~~~lTv~e~l~~~~-~~~~~-~~-~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGer 182 (449)
.+.++|++|+. .+++.+|+.+|..+.. ..... .. ......++.+.++++.+++. +..++++.+||||||
T Consensus 318 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~ 397 (491)
T PRK10982 318 NEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQ 397 (491)
T ss_pred HHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHH
Confidence 24589999985 4688888887743221 00000 01 12233456678899999995 568999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 183 RRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 183 qRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
|||+||++|+.+|+||||||||+|||+.++..+++.|++++++ |. |||++|||+ .++..+||++++|++|+++..+
T Consensus 398 qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~-~~--tvi~vsHd~-~~~~~~~d~v~~l~~g~i~~~~ 473 (491)
T PRK10982 398 QKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKK-DK--GIIIISSEM-PELLGITDRILVMSNGLVAGIV 473 (491)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHC-CC--EEEEECCCh-HHHHhhCCEEEEEECCEEEEEE
Confidence 9999999999999999999999999999999999999999854 55 999999996 5789999999999999999877
Q ss_pred Ch
Q 044030 263 PA 264 (449)
Q Consensus 263 ~~ 264 (449)
++
T Consensus 474 ~~ 475 (491)
T PRK10982 474 DT 475 (491)
T ss_pred cc
Confidence 54
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-39 Score=316.18 Aligned_cols=199 Identities=24% Similarity=0.391 Sum_probs=162.2
Q ss_pred CCeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc
Q 044030 34 DGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA 113 (449)
Q Consensus 34 ~~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~ 113 (449)
....|+++|+++. .+.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|
T Consensus 36 ~~~~l~i~nls~~--------~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~---~G~I~i~g------ 98 (282)
T cd03291 36 DDNNLFFSNLCLV--------GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPS---EGKIKHSG------ 98 (282)
T ss_pred CCCeEEEEEEEEe--------cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECC------
Confidence 3456899999974 246999999999999999999999999999999999999774 89999988
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch-----------hhCccCCCCChHHH
Q 044030 114 YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD-----------AMNTRIRRLSGGQK 182 (449)
Q Consensus 114 ~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----------~~~~~~~~LSgGer 182 (449)
.++|++|++.+++. ||+||+.+.... .. ..+.+.++.+++.+ ..++.+..||||||
T Consensus 99 --~i~yv~q~~~l~~~-tv~enl~~~~~~------~~----~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~ 165 (282)
T cd03291 99 --RISFSSQFSWIMPG-TIKENIIFGVSY------DE----YRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQR 165 (282)
T ss_pred --EEEEEeCccccccc-CHHHHhhccccc------CH----HHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHH
Confidence 38999999988875 999999874321 11 11223334344432 22344679999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEe
Q 044030 183 RRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRI-AKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYF 261 (449)
Q Consensus 183 qRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l-~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~ 261 (449)
||++||++|+.+|+++||||||+|||+.++..+.+.+ +.++ + +. |||++||++. .+ ..||++++|++|++++.
T Consensus 166 qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~-~~--tIiiisH~~~-~~-~~~d~i~~l~~G~i~~~ 239 (282)
T cd03291 166 ARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-A-NK--TRILVTSKME-HL-KKADKILILHEGSSYFY 239 (282)
T ss_pred HHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-C-CC--EEEEEeCChH-HH-HhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999865 5664 3 44 9999999974 45 68999999999999999
Q ss_pred cChhhHH
Q 044030 262 GPATAAN 268 (449)
Q Consensus 262 g~~~~~~ 268 (449)
|+++++.
T Consensus 240 g~~~~~~ 246 (282)
T cd03291 240 GTFSELQ 246 (282)
T ss_pred CCHHHHH
Confidence 9987654
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=293.67 Aligned_cols=156 Identities=30% Similarity=0.509 Sum_probs=138.9
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
|+++|+++.| +++++|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.+...
T Consensus 1 l~~~~l~~~~------~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~v~~~g~~~~~~~~~~ 71 (163)
T cd03216 1 LELRGITKRF------GGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD---SGEILVDGKEVSFASPRD 71 (163)
T ss_pred CEEEEEEEEE------CCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEECCcCCHHH
Confidence 4689999983 3457999999999999999999999999999999999999774 8999999987531
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEI 191 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL 191 (449)
..+.++|++| ||||||||++||+||
T Consensus 72 ~~~~~i~~~~q------------------------------------------------------LS~G~~qrl~laral 97 (163)
T cd03216 72 ARRAGIAMVYQ------------------------------------------------------LSVGERQMVEIARAL 97 (163)
T ss_pred HHhcCeEEEEe------------------------------------------------------cCHHHHHHHHHHHHH
Confidence 1245788887 999999999999999
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 192 LTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 192 ~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
+.+|++++|||||+|||+.++..+.+.|++++++ |. |||++||++ .++.+.||++++|++|++++
T Consensus 98 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~-~~--tiii~sh~~-~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 98 ARNARLLILDEPTAALTPAEVERLFKVIRRLRAQ-GV--AVIFISHRL-DEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHC-CC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999999999999744 54 999999996 46888999999999999875
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=295.43 Aligned_cols=163 Identities=32% Similarity=0.507 Sum_probs=143.2
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcE
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTS 117 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i 117 (449)
++++|+++.| . +++.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|. +.+
T Consensus 1 i~~~~~~~~~-~----~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~------~~i 66 (166)
T cd03223 1 IELENLSLAT-P----DGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWG---SGRIGMPEG------EDL 66 (166)
T ss_pred CEEEEEEEEc-C----CCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCC------ceE
Confidence 4689999983 2 2356999999999999999999999999999999999998774 899999874 469
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCE
Q 044030 118 AYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKL 197 (449)
Q Consensus 118 ~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~l 197 (449)
+|++|++.++ ..|+.||+.+. .+..||||||||++||+||+.+|++
T Consensus 67 ~~~~q~~~~~-~~tv~~nl~~~---------------------------------~~~~LS~G~~~rv~laral~~~p~~ 112 (166)
T cd03223 67 LFLPQRPYLP-LGTLREQLIYP---------------------------------WDDVLSGGEQQRLAFARLLLHKPKF 112 (166)
T ss_pred EEECCCCccc-cccHHHHhhcc---------------------------------CCCCCCHHHHHHHHHHHHHHcCCCE
Confidence 9999998765 56999998542 3578999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCC
Q 044030 198 LFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAG 256 (449)
Q Consensus 198 lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G 256 (449)
++|||||+|||+.++..+.+.|+++ +. |+|++||++. ....||++++|++|
T Consensus 113 lllDEPt~~LD~~~~~~l~~~l~~~----~~--tiiivsh~~~--~~~~~d~i~~l~~~ 163 (166)
T cd03223 113 VFLDEATSALDEESEDRLYQLLKEL----GI--TVISVGHRPS--LWKFHDRVLDLDGE 163 (166)
T ss_pred EEEECCccccCHHHHHHHHHHHHHh----CC--EEEEEeCChh--HHhhCCEEEEEcCC
Confidence 9999999999999999999999875 34 9999999973 45799999999875
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=347.75 Aligned_cols=211 Identities=23% Similarity=0.322 Sum_probs=175.1
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccC
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYG 115 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~ 115 (449)
.+++++||++.| . +++.+|+|+||+|++|++++|+|||||||||||++|+|+.+|+ +|+|.+++. .
T Consensus 3 ~~i~~~nls~~~-~----~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~---~G~i~~~~~------~ 68 (552)
T TIGR03719 3 YIYTMNRVSKVV-P----PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEF---NGEARPAPG------I 68 (552)
T ss_pred EEEEEeeEEEec-C----CCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCC------C
Confidence 468999999983 1 1457999999999999999999999999999999999998774 899999762 3
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHHhccC------------CCCCCHH---------------------HHHHHHHHHHH
Q 044030 116 TSAYVTQDDTLITTLTVKEAVYYSAQLQL------------PDTMPKS---------------------DKKERAEVTIR 162 (449)
Q Consensus 116 ~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~------------~~~~~~~---------------------~~~~~v~~~l~ 162 (449)
.++||+|++.+++.+||.||+.++..... ......+ ....++.++++
T Consensus 69 ~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 148 (552)
T TIGR03719 69 KVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMD 148 (552)
T ss_pred EEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHh
Confidence 69999999999999999999987532100 0000000 01245677888
Q ss_pred HcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHH
Q 044030 163 EMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSE 242 (449)
Q Consensus 163 ~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~ 242 (449)
.+|+.. .++++.+|||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++. . |||++||++ ..
T Consensus 149 ~~~l~~-~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~----~--tvIiisHd~-~~ 220 (552)
T TIGR03719 149 ALRCPP-WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYP----G--TVVAVTHDR-YF 220 (552)
T ss_pred hCCCCc-ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCC----C--eEEEEeCCH-HH
Confidence 889864 688999999999999999999999999999999999999999999999998752 3 999999996 57
Q ss_pred HHhhcCeEEEeeCCeEE-EecChhhHH
Q 044030 243 VFQLFHNLCLLSAGQTV-YFGPATAAN 268 (449)
Q Consensus 243 i~~~~D~v~~l~~G~iv-~~g~~~~~~ 268 (449)
+..+||++++|++|+++ +.|+.++..
T Consensus 221 ~~~~~d~v~~l~~g~i~~~~g~~~~~~ 247 (552)
T TIGR03719 221 LDNVAGWILELDRGRGIPWEGNYSSWL 247 (552)
T ss_pred HHhhcCeEEEEECCEEEEecCCHHHHH
Confidence 88999999999999976 778877543
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-40 Score=307.01 Aligned_cols=218 Identities=27% Similarity=0.424 Sum_probs=184.4
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecc---
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKA--- 111 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~--- 111 (449)
...|+++|+++. + +++.||+|+|++|++||-++|+|||||||||||++++|..+|. +|.+.+.|+...
T Consensus 29 ~~li~l~~v~v~--r----~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ps---sg~~~~~G~~~G~~~ 99 (257)
T COG1119 29 EPLIELKNVSVR--R----NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS---SGDVTLLGRRFGKGE 99 (257)
T ss_pred cceEEecceEEE--E----CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCC---CCceeeeeeeccCCc
Confidence 456999999998 2 6789999999999999999999999999999999999998874 899999998642
Q ss_pred c---ccCcEEEEcCC--CCCCCCCCHHHHHHHHHh--ccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHH
Q 044030 112 L---AYGTSAYVTQD--DTLITTLTVKEAVYYSAQ--LQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRR 184 (449)
Q Consensus 112 ~---~~~~i~yv~Q~--~~l~~~lTv~e~l~~~~~--~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR 184 (449)
. .+++||||.-. ..+.+..+|+|-+.-+.. .-.......++..+++..+++.+|+.+.+|++...||-|||||
T Consensus 100 ~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rr 179 (257)
T COG1119 100 TIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRR 179 (257)
T ss_pred chHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHH
Confidence 1 24679999765 344566788887754322 1111112335566788999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 185 VSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 185 v~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
|.|||||+.+|++|||||||+|||...+..+.+.|.+++...+ +.++|++||++ +++-..+++++++++|+++++|.
T Consensus 180 vLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~-~~~ll~VtHh~-eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 180 VLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPG-APALLFVTHHA-EEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCC-CceEEEEEcch-hhcccccceEEEeeCCceeeccc
Confidence 9999999999999999999999999999999999999985543 45999999996 68999999999999999999874
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=293.34 Aligned_cols=193 Identities=25% Similarity=0.443 Sum_probs=171.5
Q ss_pred cccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----ccCcEEEEcCCCCCCC
Q 044030 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-----AYGTSAYVTQDDTLIT 128 (449)
Q Consensus 54 ~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-----~~~~i~yv~Q~~~l~~ 128 (449)
++..||+|+||.+.+||..+|.||||||||||+|+++.+.+|+ +|.+++.|++... .+..++|+.|.+.+|+
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~---~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg 90 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFG 90 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCC---CceEEEcCccccccChHHHHHHHHHHHcCccccc
Confidence 5678999999999999999999999999999999999999874 9999999998642 1357999999999999
Q ss_pred CCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch-hhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 044030 129 TLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD-AMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGL 207 (449)
Q Consensus 129 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgL 207 (449)
+ ||++|+.|...++... ..+..+.++++.+++.+ .+++.+.+||||||||++|+|.|..-|+||+||||||+|
T Consensus 91 ~-tVeDNlifP~~~r~rr-----~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsAL 164 (223)
T COG4619 91 D-TVEDNLIFPWQIRNRR-----PDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSAL 164 (223)
T ss_pred c-chhhccccchHHhccC-----CChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhc
Confidence 8 9999999987765321 13456778999999975 689999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeE
Q 044030 208 DSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQT 258 (449)
Q Consensus 208 D~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~i 258 (449)
|+.++..|-++|.++.++... .++-+|||+ ++..+.+|+++-+..|++
T Consensus 165 D~~nkr~ie~mi~~~v~~q~v--Av~WiTHd~-dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 165 DESNKRNIEEMIHRYVREQNV--AVLWITHDK-DQAIRHADKVITLQPGHA 212 (223)
T ss_pred ChhhHHHHHHHHHHHhhhhce--EEEEEecCh-HHHhhhhheEEEeccCcc
Confidence 999999999999998866655 999999997 577899999999999875
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-39 Score=306.13 Aligned_cols=191 Identities=27% Similarity=0.404 Sum_probs=168.1
Q ss_pred eeEEEEeeEEEEeecCc--cc--ccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecc
Q 044030 36 VFLTWKDLTVTIVSNGK--KG--SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKA 111 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~--~~--~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~ 111 (449)
..++++||++.| ..+. .. ...+++||||+|++||+++|+|.||||||||-|+|.|+.+| ++|+|+++|++..
T Consensus 3 ~ll~v~~l~k~f-~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~p---t~G~i~f~g~~i~ 78 (268)
T COG4608 3 PLLEVKNLKKYF-PVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEP---TSGEILFEGKDIT 78 (268)
T ss_pred ceEEEeccEEEE-ecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCC---CCceEEEcCcchh
Confidence 368999999984 3221 11 24799999999999999999999999999999999999987 4999999998743
Q ss_pred cccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccCCCCChHHHHHHHHHHH
Q 044030 112 LAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSGGQKRRVSISIE 190 (449)
Q Consensus 112 ~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGerqRv~ia~a 190 (449)
... ..+..+++.++|+.+|+. +.+++++++||||||||++||||
T Consensus 79 ~~~-----------------------------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARA 123 (268)
T COG4608 79 KLS-----------------------------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARA 123 (268)
T ss_pred hcc-----------------------------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHH
Confidence 111 234567799999999996 48899999999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 191 ILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 191 L~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
|+.+|+++++|||+|+||...+.+++++|+++.++.|. |.+++|||. +.+..++|++++|..|+++..|+.+++.
T Consensus 124 Lal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~l--t~lFIsHDL-~vv~~isdri~VMy~G~iVE~g~~~~~~ 198 (268)
T COG4608 124 LALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGL--TYLFISHDL-SVVRYISDRIAVMYLGKIVEIGPTEEVF 198 (268)
T ss_pred HhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCC--eEEEEEEEH-HhhhhhcccEEEEecCceeEecCHHHHh
Confidence 99999999999999999999999999999999988876 999999996 5789999999999999999999998763
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=341.65 Aligned_cols=204 Identities=22% Similarity=0.356 Sum_probs=172.2
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccccc
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAY 114 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~ 114 (449)
...|+++||++.| +++.+|+||||+|++||+++|+||||||||||+++|+|+++|. +|+|.+++.
T Consensus 322 ~~~l~~~~l~~~~------~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~---~G~i~~~~~------ 386 (556)
T PRK11819 322 DKVIEAENLSKSF------GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPD---SGTIKIGET------ 386 (556)
T ss_pred CeEEEEEeEEEEE------CCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCc------
Confidence 3579999999983 3467999999999999999999999999999999999998774 899999542
Q ss_pred CcEEEEcCCC-CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch-hhCccCCCCChHHHHHHHHHHHHH
Q 044030 115 GTSAYVTQDD-TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD-AMNTRIRRLSGGQKRRVSISIEIL 192 (449)
Q Consensus 115 ~~i~yv~Q~~-~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LSgGerqRv~ia~aL~ 192 (449)
..+||++|+. .+++.+||.|++.+..... ..... ...+.++++.+|+.+ ..++++.+|||||||||+||+||+
T Consensus 387 ~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~ 461 (556)
T PRK11819 387 VKLAYVDQSRDALDPNKTVWEEISGGLDII---KVGNR--EIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLK 461 (556)
T ss_pred eEEEEEeCchhhcCCCCCHHHHHHhhcccc---ccccc--HHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHh
Confidence 2589999996 7888999999998865322 11111 123457899999974 679999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeC-CeEE-EecChh
Q 044030 193 TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSA-GQTV-YFGPAT 265 (449)
Q Consensus 193 ~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~-G~iv-~~g~~~ 265 (449)
.+|++|||||||+|||+.++..+.+.|+++. + |||++|||+ ..+..+||++++|++ |++. +.|+.+
T Consensus 462 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-----~-tvi~vtHd~-~~~~~~~d~i~~l~~~g~~~~~~g~~~ 529 (556)
T PRK11819 462 QGGNVLLLDEPTNDLDVETLRALEEALLEFP-----G-CAVVISHDR-WFLDRIATHILAFEGDSQVEWFEGNFQ 529 (556)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC-----C-eEEEEECCH-HHHHHhCCEEEEEECCCeEEEecCCHH
Confidence 9999999999999999999999999999873 3 899999996 578999999999986 7776 456543
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=315.12 Aligned_cols=225 Identities=23% Similarity=0.380 Sum_probs=196.8
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEecc---
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSD--TRQTGKILINGHKKA--- 111 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~--~~~~G~I~~~g~~~~--- 111 (449)
.|+++|+++.+ . ...+...++++|||++.+||.+||+|.||||||-..+.|+|+++.. ...+|+|.++|++.-
T Consensus 6 lL~v~nLsV~f-~-~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~s 83 (534)
T COG4172 6 LLSIRNLSVAF-H-QEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAAS 83 (534)
T ss_pred ceeeeccEEEE-e-cCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCC
Confidence 58999999984 2 2336788999999999999999999999999999999999999652 234899999998741
Q ss_pred ------cccCcEEEEcCCC--CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch---hhCccCCCCChH
Q 044030 112 ------LAYGTSAYVTQDD--TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD---AMNTRIRRLSGG 180 (449)
Q Consensus 112 ------~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~~~~LSgG 180 (449)
.+..+|+++||++ .+.|-.|+...+.-..+++ .+++.++.++++.++|+.+|+.+ ..+.++++||||
T Consensus 84 e~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~H--rg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGG 161 (534)
T COG4172 84 ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLH--RGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGG 161 (534)
T ss_pred HHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcc
Confidence 1224799999997 5788889998888777665 35678888999999999999953 578999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 181 erqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
|||||.||+||+++|++||.||||++||...+.+|+++|+++.++.|. .++++|||. .-+.+++|+|+||.+|++++
T Consensus 162 qRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gM--a~lfITHDL-~iVr~~ADrV~VM~~G~ivE 238 (534)
T COG4172 162 QRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGM--AILFITHDL-GIVRKFADRVYVMQHGEIVE 238 (534)
T ss_pred hhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCc--EEEEEeccH-HHHHHhhhhEEEEeccEEee
Confidence 999999999999999999999999999999999999999999988866 999999997 57899999999999999999
Q ss_pred ecChhhHH
Q 044030 261 FGPATAAN 268 (449)
Q Consensus 261 ~g~~~~~~ 268 (449)
.|+.+++.
T Consensus 239 ~~~t~~lF 246 (534)
T COG4172 239 TGTTETLF 246 (534)
T ss_pred cCcHHHHh
Confidence 99987664
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=340.21 Aligned_cols=202 Identities=22% Similarity=0.372 Sum_probs=171.0
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccC
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYG 115 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~ 115 (449)
..++++|+++.| +++.+|+|+||+|++|++++|+||||||||||+++|+|+.+|. +|+|.+++. .
T Consensus 321 ~~l~~~~l~~~~------~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~~~------~ 385 (552)
T TIGR03719 321 KVIEAENLSKGF------GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPD---SGTIKIGET------V 385 (552)
T ss_pred eEEEEeeEEEEE------CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CeEEEECCc------e
Confidence 469999999983 3467999999999999999999999999999999999998774 899999542 2
Q ss_pred cEEEEcCCC-CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch-hhCccCCCCChHHHHHHHHHHHHHh
Q 044030 116 TSAYVTQDD-TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD-AMNTRIRRLSGGQKRRVSISIEILT 193 (449)
Q Consensus 116 ~i~yv~Q~~-~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LSgGerqRv~ia~aL~~ 193 (449)
.++|++|+. .+++.+||.|++.++.... ..... ...+.++++.+|+.. ..++++..|||||||||+||++|+.
T Consensus 386 ~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~ 460 (552)
T TIGR03719 386 KLAYVDQSRDALDPNKTVWEEISGGLDII---QLGKR--EVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKS 460 (552)
T ss_pred EEEEEeCCccccCCCCcHHHHHHhhcccc---ccCcc--hHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhh
Confidence 589999996 4788899999998864322 11111 223567899999974 6799999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeC-CeEE-EecCh
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSA-GQTV-YFGPA 264 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~-G~iv-~~g~~ 264 (449)
+|++|||||||+|||+.++..+++.|+++. + |||++|||+ ..+..+||++++|++ |+++ +.|+.
T Consensus 461 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-----~-~viivsHd~-~~~~~~~d~i~~l~~~~~~~~~~g~~ 526 (552)
T TIGR03719 461 GGNVLLLDEPTNDLDVETLRALEEALLEFA-----G-CAVVISHDR-WFLDRIATHILAFEGDSHVEWFEGNY 526 (552)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHCC-----C-eEEEEeCCH-HHHHHhCCEEEEEECCCeEEEeCCCH
Confidence 999999999999999999999999999873 3 899999996 578899999999986 5776 44554
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=340.11 Aligned_cols=199 Identities=25% Similarity=0.318 Sum_probs=173.5
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccccc
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAY 114 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~ 114 (449)
...++++|+++.| ++. .|+++||++++||+++|+||||||||||+++|+|+++|+ +|+|.++
T Consensus 338 ~~~l~~~~ls~~~------~~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~---~G~I~~~-------- 399 (590)
T PRK13409 338 ETLVEYPDLTKKL------GDF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPD---EGEVDPE-------- 399 (590)
T ss_pred ceEEEEcceEEEE------CCE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEEe--------
Confidence 3569999999983 222 599999999999999999999999999999999999774 8999986
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhC
Q 044030 115 GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTR 194 (449)
Q Consensus 115 ~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~ 194 (449)
..++|++|+..+++.+||+|++.+..... .. ...+.++++.++|.+..++++.+|||||||||+||+||+.+
T Consensus 400 ~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~-----~~---~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~ 471 (590)
T PRK13409 400 LKISYKPQYIKPDYDGTVEDLLRSITDDL-----GS---SYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRD 471 (590)
T ss_pred eeEEEecccccCCCCCcHHHHHHHHhhhc-----Ch---HHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcC
Confidence 14899999988888999999998753211 11 12467899999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 195 PKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 195 P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
|++|||||||+|||+.++..+.+.|++++++.|. |||++|||+ .++..+||++++|+ |++...|.
T Consensus 472 p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~--tviivsHD~-~~~~~~aDrvivl~-~~~~~~g~ 536 (590)
T PRK13409 472 ADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREA--TALVVDHDI-YMIDYISDRLMVFE-GEPGKHGH 536 (590)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCC--EEEEEeCCH-HHHHHhCCEEEEEc-Ccceeeee
Confidence 9999999999999999999999999999866555 999999996 57889999999996 57777765
|
|
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-39 Score=290.30 Aligned_cols=219 Identities=26% Similarity=0.413 Sum_probs=191.9
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC-Eeccc--
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING-HKKAL-- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g-~~~~~-- 112 (449)
..|+++||+++ + ++..+|+|+||++.+||+-+|||||||||||+|.+|+|..+| .+|+|+++| .++..
T Consensus 4 ~iL~~~~vsVs-F-----~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp---~~G~v~f~g~~dl~~~~ 74 (249)
T COG4674 4 IILYLDGVSVS-F-----GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRP---QEGEVLFDGDTDLTKLP 74 (249)
T ss_pred ceEEEeceEEE-E-----cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCC---CcceEEEcCchhhccCC
Confidence 46899999998 3 677899999999999999999999999999999999999877 489999999 44321
Q ss_pred ----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCC-----CCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHH
Q 044030 113 ----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPD-----TMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKR 183 (449)
Q Consensus 113 ----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerq 183 (449)
.+..||-=||.+..|..+||+|||.++.....+. .....+.+++++++|+..||.+..+.....||-||||
T Consensus 75 e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQ 154 (249)
T COG4674 75 EHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQ 154 (249)
T ss_pred HHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhh
Confidence 2346889999999999999999999986532110 0112344678999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
++.|++-++++|++|++|||++|+--....+.-++|+.++. +.+|+++-||+ ..+.+++|+|-+|++|.+...|+
T Consensus 155 wLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~----~hsilVVEHDM-~Fvr~~A~~VTVlh~G~VL~EGs 229 (249)
T COG4674 155 WLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG----KHSILVVEHDM-GFVREIADKVTVLHEGSVLAEGS 229 (249)
T ss_pred hhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc----CceEEEEeccH-HHHHHhhheeEEEeccceeeccc
Confidence 99999999999999999999999999999999999999985 33999999996 68999999999999999999999
Q ss_pred hhhHH
Q 044030 264 ATAAN 268 (449)
Q Consensus 264 ~~~~~ 268 (449)
.+++.
T Consensus 230 ld~v~ 234 (249)
T COG4674 230 LDEVQ 234 (249)
T ss_pred HHHhh
Confidence 88764
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-39 Score=373.98 Aligned_cols=215 Identities=24% Similarity=0.373 Sum_probs=173.1
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCC--------------------
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSD-------------------- 96 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~-------------------- 96 (449)
.|+++||+|.| .. +.++++|+|+||+|++|+.+||+||||||||||+++|+|++.|.
T Consensus 1165 ~I~f~nVsF~Y-~~--~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~ 1241 (1466)
T PTZ00265 1165 KIEIMDVNFRY-IS--RPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQD 1241 (1466)
T ss_pred eEEEEEEEEEC-CC--CCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccc
Confidence 59999999993 21 12357999999999999999999999999999999999999872
Q ss_pred -------------------------------CCceeEEEECCEeccc-----ccCcEEEEcCCCCCCCCCCHHHHHHHHH
Q 044030 97 -------------------------------TRQTGKILINGHKKAL-----AYGTSAYVTQDDTLITTLTVKEAVYYSA 140 (449)
Q Consensus 97 -------------------------------~~~~G~I~~~g~~~~~-----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~ 140 (449)
.+.+|+|++||.++.. .++.++||+|++.+|+. |++|||.|+.
T Consensus 1242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~g-TIreNI~~g~ 1320 (1466)
T PTZ00265 1242 YQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNM-SIYENIKFGK 1320 (1466)
T ss_pred cccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccc-cHHHHHhcCC
Confidence 0248999999998632 24679999999999975 9999998873
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHcCCc-------hhhCccC----CCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 044030 141 QLQLPDTMPKSDKKERAEVTIREMGLQ-------DAMNTRI----RRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDS 209 (449)
Q Consensus 141 ~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~~----~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~ 209 (449)
. ..+.+ .+.+.++..++. +-.|+.+ ..||||||||++|||||+.+|+|||||||||+||+
T Consensus 1321 ~-----~at~e----eI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~ 1391 (1466)
T PTZ00265 1321 E-----DATRE----DVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDS 1391 (1466)
T ss_pred C-----CCCHH----HHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCH
Confidence 2 12222 244444444332 2334444 57999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeC----CeEE-EecChhhHH
Q 044030 210 AASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSA----GQTV-YFGPATAAN 268 (449)
Q Consensus 210 ~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~----G~iv-~~g~~~~~~ 268 (449)
.+...|.+.|.++.+..++ |+|+++|+++ ..+.||+|++|++ |+++ ..|+.+++.
T Consensus 1392 ~sE~~I~~~L~~~~~~~~~--TvIiIaHRls--ti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265 1392 NSEKLIEKTIVDIKDKADK--TIITIAHRIA--SIKRSDKIVVFNNPDRTGSFVQAHGTHEELL 1451 (1466)
T ss_pred HHHHHHHHHHHHHhccCCC--EEEEEechHH--HHHhCCEEEEEeCCCCCCCEEEEecCHHHHH
Confidence 9999999999998522344 9999999973 4677999999999 9955 899988774
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=370.75 Aligned_cols=209 Identities=21% Similarity=0.289 Sum_probs=173.4
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
-.|+++||+++| . .+...+|+|+||+|++||.+||+|+||||||||+++|.|+++|. +|+|.+||.++..
T Consensus 1236 g~I~f~nVsf~Y-~---~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~---~G~I~IDG~dI~~i~l 1308 (1622)
T PLN03130 1236 GSIKFEDVVLRY-R---PELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELE---RGRILIDGCDISKFGL 1308 (1622)
T ss_pred CcEEEEEEEEEe-C---CCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCEecccCCH
Confidence 369999999994 2 12347999999999999999999999999999999999999874 8999999998642
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch-----------hhCccCCCCCh
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD-----------AMNTRIRRLSG 179 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----------~~~~~~~~LSg 179 (449)
.+++++||||++.+|+. |++|||.++. ..+. +.+.++++..++.+ .......+|||
T Consensus 1309 ~~LR~~IsiVpQdp~LF~G-TIreNLd~~~------~~td----eei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSg 1377 (1622)
T PLN03130 1309 MDLRKVLGIIPQAPVLFSG-TVRFNLDPFN------EHND----ADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSV 1377 (1622)
T ss_pred HHHHhccEEECCCCccccc-cHHHHhCcCC------CCCH----HHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCH
Confidence 24679999999999988 9999996542 1122 23445555544432 22333368999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEE
Q 044030 180 GQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTV 259 (449)
Q Consensus 180 GerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv 259 (449)
|||||++|||||+++|+||+||||||+||+.+...|.+.|++..+ ++|||+++|+++ .+ ..||+|++|++|+++
T Consensus 1378 GQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~----~~TvI~IAHRL~-tI-~~~DrIlVLd~G~Iv 1451 (1622)
T PLN03130 1378 GQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK----SCTMLIIAHRLN-TI-IDCDRILVLDAGRVV 1451 (1622)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC----CCEEEEEeCChH-HH-HhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999998853 449999999974 44 559999999999999
Q ss_pred EecChhhHH
Q 044030 260 YFGPATAAN 268 (449)
Q Consensus 260 ~~g~~~~~~ 268 (449)
++|+++++.
T Consensus 1452 E~Gt~~eLl 1460 (1622)
T PLN03130 1452 EFDTPENLL 1460 (1622)
T ss_pred EeCCHHHHH
Confidence 999999875
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=370.05 Aligned_cols=208 Identities=20% Similarity=0.313 Sum_probs=173.1
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.|+++||++.| . .+.+.+|+|+||+|++||.+||+||||||||||+++|.|+++|. +|+|.+||.++..
T Consensus 1234 ~I~f~nVsf~Y-~---~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~---~G~I~IdG~di~~i~~~ 1306 (1495)
T PLN03232 1234 SIKFEDVHLRY-R---PGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELE---KGRIMIDDCDVAKFGLT 1306 (1495)
T ss_pred cEEEEEEEEEE-C---CCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CceEEECCEEhhhCCHH
Confidence 59999999994 2 13357999999999999999999999999999999999999874 8999999998632
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch-----------hhCccCCCCChH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD-----------AMNTRIRRLSGG 180 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----------~~~~~~~~LSgG 180 (449)
.+++++||||++.+|+. |++|||.++. ..+. +++.+.++..++.+ .......+||||
T Consensus 1307 ~lR~~i~iVpQdp~LF~g-TIr~NL~~~~------~~sd----eei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgG 1375 (1495)
T PLN03232 1307 DLRRVLSIIPQSPVLFSG-TVRFNIDPFS------EHND----ADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVG 1375 (1495)
T ss_pred HHHhhcEEECCCCeeeCc-cHHHHcCCCC------CCCH----HHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHH
Confidence 24679999999999987 9999996532 1222 23445555555433 233334689999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 181 erqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
||||++|||||+++|+||+||||||+||+.+...|.+.|++..+ ++|+|+++|+++ .+ ..||+|++|++|++++
T Consensus 1376 QrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~----~~TvI~IAHRl~-ti-~~~DrIlVL~~G~ivE 1449 (1495)
T PLN03232 1376 QRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFK----SCTMLVIAHRLN-TI-IDCDKILVLSSGQVLE 1449 (1495)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC----CCEEEEEeCCHH-HH-HhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999998753 449999999973 44 5599999999999999
Q ss_pred ecChhhHH
Q 044030 261 FGPATAAN 268 (449)
Q Consensus 261 ~g~~~~~~ 268 (449)
.|+++++.
T Consensus 1450 ~Gt~~eLl 1457 (1495)
T PLN03232 1450 YDSPQELL 1457 (1495)
T ss_pred ECCHHHHH
Confidence 99998875
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=291.15 Aligned_cols=219 Identities=21% Similarity=0.308 Sum_probs=191.1
Q ss_pred eEEEEeeEEEEeec----------------C--cccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCC
Q 044030 37 FLTWKDLTVTIVSN----------------G--KKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTR 98 (449)
Q Consensus 37 ~l~~~nls~~~~~~----------------~--~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~ 98 (449)
.++++||++.|-.. + +.....+|+||||++++||.+||+|+||||||||||+|+|.++|+
T Consensus 3 ~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt-- 80 (249)
T COG1134 3 VIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT-- 80 (249)
T ss_pred EEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCC--
Confidence 57788888874211 0 124467999999999999999999999999999999999999885
Q ss_pred ceeEEEECCEecccccCcEEEEcC-CCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCC
Q 044030 99 QTGKILINGHKKALAYGTSAYVTQ-DDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRL 177 (449)
Q Consensus 99 ~~G~I~~~g~~~~~~~~~i~yv~Q-~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~L 177 (449)
+|+|.++|+-.. +.. ...+-|.+|.+||+.+...+. +++.++.+++++++++.-+|.+..|++++.+
T Consensus 81 -~G~v~v~G~v~~--------li~lg~Gf~pelTGreNi~l~~~~~---G~~~~ei~~~~~eIieFaELG~fi~~PvktY 148 (249)
T COG1134 81 -SGKVKVTGKVAP--------LIELGAGFDPELTGRENIYLRGLIL---GLTRKEIDEKVDEIIEFAELGDFIDQPVKTY 148 (249)
T ss_pred -CceEEEcceEeh--------hhhcccCCCcccchHHHHHHHHHHh---CccHHHHHHHHHHHHHHHHHHHHhhCchhhc
Confidence 999999997421 111 124557899999999988765 5778899999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCe
Q 044030 178 SGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQ 257 (449)
Q Consensus 178 SgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~ 257 (449)
|.||+-|+++|.|...+|++||+||-.+-.|+.-+++-.+.+.++.++ +. |||++|||+ ..+.++||++++|++|+
T Consensus 149 SSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~-~~--tiv~VSHd~-~~I~~~Cd~~i~l~~G~ 224 (249)
T COG1134 149 SSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEK-NK--TIVLVSHDL-GAIKQYCDRAIWLEHGQ 224 (249)
T ss_pred cHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHc-CC--EEEEEECCH-HHHHHhcCeeEEEeCCE
Confidence 999999999999999999999999999999999999999999999754 34 999999996 68999999999999999
Q ss_pred EEEecChhhHHHHHHH
Q 044030 258 TVYFGPATAANEFFAF 273 (449)
Q Consensus 258 iv~~g~~~~~~~~f~~ 273 (449)
+.+.|+++++.++|..
T Consensus 225 i~~~G~~~~vi~~Y~~ 240 (249)
T COG1134 225 IRMEGSPEEVIPAYEE 240 (249)
T ss_pred EEEcCCHHHHHHHHHH
Confidence 9999999999887754
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=339.13 Aligned_cols=194 Identities=28% Similarity=0.430 Sum_probs=159.3
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.++++||+++| .. +++++|+|+|+++++||.++|+||||||||||+|+|+|+++|. +|+|.+||.+...
T Consensus 320 ~i~~~~v~f~y-~~---~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~I~~~g~~i~~~~~~ 392 (529)
T TIGR02857 320 SLEFSGLSVAY-PG---RRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT---EGSIAVNGVPLADADAD 392 (529)
T ss_pred eEEEEEEEEEC-CC---CCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEehhhCCHH
Confidence 69999999993 21 2347999999999999999999999999999999999999874 8999999997532
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchh-----------hCccCCCCChH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDA-----------MNTRIRRLSGG 180 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-----------~~~~~~~LSgG 180 (449)
.++.++||+|++.+|+. |++||+.++.. ..++ +.+.+.++..++.+. .......||||
T Consensus 393 ~lr~~i~~v~Q~~~lf~~-ti~~Ni~~~~~-----~~~~----~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgG 462 (529)
T TIGR02857 393 SWRDQIAWVPQHPFLFAG-TIAENIRLARP-----DASD----AEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGG 462 (529)
T ss_pred HHHhheEEEcCCCcccCc-CHHHHHhccCC-----CCCH----HHHHHHHHHcCcHHHHHhCcccccchhccccccCCHH
Confidence 13579999999999976 99999987531 1122 234455555555432 23334689999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEe
Q 044030 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLL 253 (449)
Q Consensus 181 erqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l 253 (449)
||||++|||||+++|++++||||||+||+.+...+.+.|+++. + ++|+|++||+++ ..+.||+|++|
T Consensus 463 q~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~---~~t~i~itH~~~--~~~~~d~i~~l 529 (529)
T TIGR02857 463 QAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-Q---GRTVLLVTHRLA--LAERADRIVVL 529 (529)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-C---CCEEEEEecCHH--HHHhCCEEEeC
Confidence 9999999999999999999999999999999999999999985 2 449999999973 45789999875
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-38 Score=337.35 Aligned_cols=200 Identities=23% Similarity=0.265 Sum_probs=167.2
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.++++|+++.| . ++..+|+|+|+++++|+.++|+||||||||||+++|+|+++|. +|+|.+||.+...
T Consensus 322 ~i~~~~v~f~y-~----~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~~~~~~~~ 393 (547)
T PRK10522 322 TLELRNVTFAY-Q----DNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQ---SGEILLDGKPVTAEQPE 393 (547)
T ss_pred eEEEEEEEEEe-C----CCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEECCCCCHH
Confidence 69999999983 2 2346999999999999999999999999999999999999874 8999999998642
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCcc-----CCCCChHHHHHHH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTR-----IRRLSGGQKRRVS 186 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~-----~~~LSgGerqRv~ 186 (449)
.++.++||+|++.+|+. |++|| + . ...++.+.+.++.+++.+..+.. ..+||||||||++
T Consensus 394 ~~~~~i~~v~q~~~lf~~-ti~~n---~------~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~ 459 (547)
T PRK10522 394 DYRKLFSAVFTDFHLFDQ-LLGPE---G------K----PANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLA 459 (547)
T ss_pred HHhhheEEEecChhHHHH-hhccc---c------C----chHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHH
Confidence 23579999999998876 77776 1 0 11234577888889887654322 3589999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 187 ISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 187 ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
||||++.+|++++||||||+||+.++..+.+.|.+..++.++ |+|++||++ +....||++++|++|+++...
T Consensus 460 lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~--tvi~itH~~--~~~~~~d~i~~l~~G~i~e~~ 531 (547)
T PRK10522 460 LLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGK--TIFAISHDD--HYFIHADRLLEMRNGQLSELT 531 (547)
T ss_pred HHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCC--EEEEEEech--HHHHhCCEEEEEECCEEEEec
Confidence 999999999999999999999999999999999876533445 999999997 356789999999999998763
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-39 Score=341.73 Aligned_cols=182 Identities=30% Similarity=0.483 Sum_probs=150.8
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
..++++||++.| . +++.+|+|+||++++||.+||+||||||||||+|+|+|+++|+ +|+|.+||.+...
T Consensus 333 ~~I~~~~vsf~Y-~----~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~---~G~I~i~g~~i~~~~~ 404 (529)
T TIGR02868 333 PTLELRDLSFGY-P----GSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPL---QGEVTLDGVSVSSLQD 404 (529)
T ss_pred ceEEEEEEEEec-C----CCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhHHH
Confidence 359999999993 2 2346999999999999999999999999999999999999874 8999999987531
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchh-------hCccC----CCCChH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDA-------MNTRI----RRLSGG 180 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~~----~~LSgG 180 (449)
.++.++||||++.+|+. |++||+.++.. ..+ ++++.+.++..++++. .|+.+ ..||||
T Consensus 405 ~lr~~i~~V~Q~~~lF~~-TI~eNI~~g~~-----~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGG 474 (529)
T TIGR02868 405 ELRRRISVFAQDAHLFDT-TVRDNLRLGRP-----DAT----DEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGG 474 (529)
T ss_pred HHHhheEEEccCcccccc-cHHHHHhccCC-----CCC----HHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHH
Confidence 13579999999999988 99999988631 112 2345556666665443 24443 579999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCC
Q 044030 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQP 239 (449)
Q Consensus 181 erqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~ 239 (449)
||||++|||||+.+|++++||||||+||+.+...|.+.|.++.+ ++|+|++||++
T Consensus 475 QrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~----~~TvIiItHrl 529 (529)
T TIGR02868 475 ERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALS----GKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC----CCEEEEEecCC
Confidence 99999999999999999999999999999999999999998752 45999999984
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=321.06 Aligned_cols=223 Identities=26% Similarity=0.406 Sum_probs=182.1
Q ss_pred cccCCCCCeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC
Q 044030 28 INVNEDDGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING 107 (449)
Q Consensus 28 ~~~~~~~~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g 107 (449)
+.+|. +.-.|.++++++. +. ..++++|+|+||++.+||.+|||||||||||||.|+|.|..+| .+|.|++||
T Consensus 326 m~LP~-P~g~L~Ve~l~~~--PP--g~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p---~~G~VRLDg 397 (580)
T COG4618 326 MPLPA-PQGALSVERLTAA--PP--GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPP---TSGSVRLDG 397 (580)
T ss_pred CCCCC-CCceeeEeeeeec--CC--CCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHccccc---CCCcEEecc
Confidence 44443 3456899999985 32 2457899999999999999999999999999999999999987 499999999
Q ss_pred Eeccc-----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHH-----HHHHHHHHHHHcCCchhhCccC---
Q 044030 108 HKKAL-----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSD-----KKERAEVTIREMGLQDAMNTRI--- 174 (449)
Q Consensus 108 ~~~~~-----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~-----~~~~v~~~l~~lgL~~~~~~~~--- 174 (449)
.+... ..++|||+||+-.+|+. ||.|||. ++. ...+.+. +...+.+++ +.+.+-.|+.+
T Consensus 398 a~l~qWd~e~lG~hiGYLPQdVeLF~G-TIaeNIa---Rf~--~~~d~~kIieAA~lAgvHelI--l~lP~GYdT~iG~~ 469 (580)
T COG4618 398 ADLRQWDREQLGRHIGYLPQDVELFDG-TIAENIA---RFG--EEADPEKVIEAARLAGVHELI--LRLPQGYDTRIGEG 469 (580)
T ss_pred hhhhcCCHHHhccccCcCcccceecCC-cHHHHHH---hcc--ccCCHHHHHHHHHHcChHHHH--HhCcCCccCccCCC
Confidence 87532 23689999999999999 9999994 322 1122211 111233333 34555667776
Q ss_pred -CCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEe
Q 044030 175 -RRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLL 253 (449)
Q Consensus 175 -~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l 253 (449)
..||||||||+++||||..+|.+++||||-|+||......+.+.|.+++++ |. |+|+++|.| .+...+|+|++|
T Consensus 470 G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~r-G~--~vvviaHRP--s~L~~~Dkilvl 544 (580)
T COG4618 470 GATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKAR-GG--TVVVIAHRP--SALASVDKILVL 544 (580)
T ss_pred CCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHc-CC--EEEEEecCH--HHHhhcceeeee
Confidence 689999999999999999999999999999999999999999999999854 44 999999998 478899999999
Q ss_pred eCCeEEEecChhhHHHHH
Q 044030 254 SAGQTVYFGPATAANEFF 271 (449)
Q Consensus 254 ~~G~iv~~g~~~~~~~~f 271 (449)
++|++..+|+.+++....
T Consensus 545 ~~G~~~~FG~r~eVLa~~ 562 (580)
T COG4618 545 QDGRIAAFGPREEVLAKV 562 (580)
T ss_pred cCChHHhcCCHHHHHHHh
Confidence 999999999999987654
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=290.51 Aligned_cols=218 Identities=27% Similarity=0.412 Sum_probs=181.9
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA---- 113 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~---- 113 (449)
++++|+++. ++++....+++|+++|++|.+|+++.|+|.||||||||+|+|+|.+.|+ +|+|.++|.+++..
T Consensus 2 i~~~~~~~~-f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t---~G~I~Idg~dVtk~~~~~ 77 (263)
T COG1101 2 ISLSNATKT-FFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPT---SGQILIDGVDVTKKSVAK 77 (263)
T ss_pred cccccceee-ecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccC---CceEEECceecccCCHHH
Confidence 567788887 4444445688999999999999999999999999999999999999874 99999999987532
Q ss_pred -cCcEEEEcCCCC--CCCCCCHHHHHHHHHhccCCCCCCH---HHHHHHHHHHHHHc--CCchhhCccCCCCChHHHHHH
Q 044030 114 -YGTSAYVTQDDT--LITTLTVKEAVYYSAQLQLPDTMPK---SDKKERAEVTIREM--GLQDAMNTRIRRLSGGQKRRV 185 (449)
Q Consensus 114 -~~~i~yv~Q~~~--l~~~lTv~e~l~~~~~~~~~~~~~~---~~~~~~v~~~l~~l--gL~~~~~~~~~~LSgGerqRv 185 (449)
...++-|+|++. ..+.||+.||+.++..-....+... ...++...+.++.+ ||++.+++++.-|||||||-+
T Consensus 78 RA~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQal 157 (263)
T COG1101 78 RANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQAL 157 (263)
T ss_pred HhhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHH
Confidence 135788999975 5899999999998764211112222 12233344555655 678999999999999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 186 SISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 186 ~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
++++|-++.|+||+|||-|++|||.++..+++.=.++.++.+. |.+|+||.+ ..+..+-+|.++|++|+|+.+-
T Consensus 158 sL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~kl--TtlMVTHnm-~~Al~yG~RlImLh~G~IvlDv 231 (263)
T COG1101 158 SLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKL--TTLMVTHNM-EDALDYGNRLIMLHSGKIVLDV 231 (263)
T ss_pred HHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCC--ceEEEeccH-HHHHhhCCeEEEEeCCeEEEEc
Confidence 9999999999999999999999999999999999999877766 999999996 5789999999999999999874
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=338.45 Aligned_cols=203 Identities=24% Similarity=0.402 Sum_probs=173.1
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccccc
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAY 114 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~ 114 (449)
...|+++||++.| +++.+|+|+||+|++|+++||+|||||||||||++|+|.++|+ +|+|.+++.
T Consensus 310 ~~~l~~~~l~~~y------~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~---~G~i~~~~~------ 374 (638)
T PRK10636 310 NPLLKMEKVSAGY------GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPV---SGEIGLAKG------ 374 (638)
T ss_pred CceEEEEeeEEEe------CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCC------
Confidence 4469999999983 4467999999999999999999999999999999999999774 899999742
Q ss_pred CcEEEEcCCC--CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccCCCCChHHHHHHHHHHHH
Q 044030 115 GTSAYVTQDD--TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSGGQKRRVSISIEI 191 (449)
Q Consensus 115 ~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGerqRv~ia~aL 191 (449)
..+||++|+. .+.+..|+.+++.. .. .......+.++++.+++. +..++++..|||||||||+||++|
T Consensus 375 ~~igy~~Q~~~~~l~~~~~~~~~~~~---~~------~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l 445 (638)
T PRK10636 375 IKLGYFAQHQLEFLRADESPLQHLAR---LA------PQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIV 445 (638)
T ss_pred EEEEEecCcchhhCCccchHHHHHHH---hC------chhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHH
Confidence 2589999974 35566788777531 11 112245678899999996 478999999999999999999999
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEE-EecChhhHH
Q 044030 192 LTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTV-YFGPATAAN 268 (449)
Q Consensus 192 ~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv-~~g~~~~~~ 268 (449)
+.+|++|||||||+|||+.++..+.+.|+++ + | |||++|||+ ..+..+||++++|++|+++ +.|+.++..
T Consensus 446 ~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~----~-g-tvi~vSHd~-~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 446 WQRPNLLLLDEPTNHLDLDMRQALTEALIDF----E-G-ALVVVSHDR-HLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc----C-C-eEEEEeCCH-HHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 9999999999999999999999999999987 2 3 999999996 5788999999999999997 889887654
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-38 Score=335.23 Aligned_cols=203 Identities=22% Similarity=0.294 Sum_probs=166.6
Q ss_pred eeEEEEeeEEEEeecCccc-ccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc--
Q 044030 36 VFLTWKDLTVTIVSNGKKG-SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-- 112 (449)
..++++||++.| . ++.+ .+.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.+||.+...
T Consensus 336 ~~i~~~~v~f~y-~-~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~---~G~i~~~g~~i~~~~ 410 (555)
T TIGR01194 336 DSIELKDVHMNP-K-APEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQ---EGEILLDGAAVSADS 410 (555)
T ss_pred ceEEEEEEEEEe-C-CCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCC
Confidence 469999999993 2 1111 236999999999999999999999999999999999999874 8999999987642
Q ss_pred ---ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccC------CCCChHHHH
Q 044030 113 ---AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRI------RRLSGGQKR 183 (449)
Q Consensus 113 ---~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~------~~LSgGerq 183 (449)
.++.++||+|++.+|.. |+++|.. + ...++++.++++.+++.+..+..+ ..|||||||
T Consensus 411 ~~~~~~~i~~v~q~~~lf~~-ti~~n~~-------~-----~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~q 477 (555)
T TIGR01194 411 RDDYRDLFSAIFADFHLFDD-LIGPDEG-------E-----HASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQK 477 (555)
T ss_pred HHHHHhhCcEEccChhhhhh-hhhcccc-------c-----chhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHH
Confidence 13569999999998876 7888730 1 123345778899999887655443 569999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEe
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIA-KLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYF 261 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~-~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~ 261 (449)
|++||||++.+|++++|||||++||+.++..+.+.+. .++ ..++ |+|++||+++ ..+.||+|++|++|+++..
T Consensus 478 RlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~-~~~~--tiiiisH~~~--~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 478 RLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLK-RQGK--TIIIISHDDQ--YFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-hCCC--EEEEEeccHH--HHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999998764 454 3344 9999999973 5678999999999999754
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=337.84 Aligned_cols=205 Identities=23% Similarity=0.360 Sum_probs=172.5
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccccc
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAY 114 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~ 114 (449)
...|+++||++.| +++.+|+|+||+|++|++++|+|||||||||||++|+|+++|+ +|+|.+ |.+
T Consensus 317 ~~~l~~~~l~~~~------~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~---~G~i~~-~~~----- 381 (635)
T PRK11147 317 KIVFEMENVNYQI------DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQAD---SGRIHC-GTK----- 381 (635)
T ss_pred CceEEEeeeEEEE------CCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEE-CCC-----
Confidence 4569999999983 4467999999999999999999999999999999999998774 899998 432
Q ss_pred CcEEEEcCCC-CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccCCCCChHHHHHHHHHHHHH
Q 044030 115 GTSAYVTQDD-TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSGGQKRRVSISIEIL 192 (449)
Q Consensus 115 ~~i~yv~Q~~-~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGerqRv~ia~aL~ 192 (449)
-.+||++|+. .+++.+||.|++.+..... ... .....+.++++.+++. +..+++++.|||||||||+||++|+
T Consensus 382 ~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~ 456 (635)
T PRK11147 382 LEVAYFDQHRAELDPEKTVMDNLAEGKQEV---MVN--GRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFL 456 (635)
T ss_pred cEEEEEeCcccccCCCCCHHHHHHhhcccc---ccc--chHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHh
Confidence 2589999985 5889999999998753211 011 1234577889999995 5789999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEee-CCeEEEe-cChhh
Q 044030 193 TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLS-AGQTVYF-GPATA 266 (449)
Q Consensus 193 ~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~-~G~iv~~-g~~~~ 266 (449)
.+|++|||||||+|||+.++..+.+.|+++ +. |||++|||. ..+..+||++++|+ +|++..+ |+-++
T Consensus 457 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~--tvi~vSHd~-~~~~~~~d~i~~l~~~g~i~~~~g~y~~ 525 (635)
T PRK11147 457 KPSNLLILDEPTNDLDVETLELLEELLDSY----QG--TVLLVSHDR-QFVDNTVTECWIFEGNGKIGRYVGGYHD 525 (635)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHhC----CC--eEEEEECCH-HHHHHhcCEEEEEeCCCeEEEccCCHHH
Confidence 999999999999999999999999999875 22 999999995 57889999999998 7998654 55443
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-38 Score=303.95 Aligned_cols=198 Identities=25% Similarity=0.350 Sum_probs=164.5
Q ss_pred eeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEE-----------ECCEec
Q 044030 42 DLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKIL-----------INGHKK 110 (449)
Q Consensus 42 nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~-----------~~g~~~ 110 (449)
||+++| . ..+.+|+|+| .+++||+++|+||||||||||||+|+|+++|+ +|+|+ ++|.+.
T Consensus 5 ~~~~~y-~----~~~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~---~G~I~~~~~~~~~~~~~~g~~~ 75 (255)
T cd03236 5 EPVHRY-G----PNSFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPN---LGKFDDPPDWDEILDEFRGSEL 75 (255)
T ss_pred Ccceee-c----CcchhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEeeccccchhhhhccCchh
Confidence 566662 1 2236999999 59999999999999999999999999999874 99996 778764
Q ss_pred cc-----c--cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHH
Q 044030 111 AL-----A--YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKR 183 (449)
Q Consensus 111 ~~-----~--~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerq 183 (449)
.. . ...++|++|+..+++. ++.+++.+... ....++.+.++++.+|+.+..++.+..|||||||
T Consensus 76 ~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l~--------~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~q 146 (255)
T cd03236 76 QNYFTKLLEGDVKVIVKPQYVDLIPK-AVKGKVGELLK--------KKDERGKLDELVDQLELRHVLDRNIDQLSGGELQ 146 (255)
T ss_pred hhhhHHhhhcccceeeecchhccCch-HHHHHHHHHhc--------hhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHH
Confidence 21 1 1247899999888884 88888876421 1233456789999999999999999999999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
|++||++|+.+|++++|||||+|||+.++..+.+.|++++++ ++ |||++||++ ..+..+||++++|+ |++.+.|
T Consensus 147 rv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~-~~--tIIiiSHd~-~~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 147 RVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAED-DN--YVLVVEHDL-AVLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CC--EEEEEECCH-HHHHHhCCEEEEEC-CCCCcce
Confidence 999999999999999999999999999999999999999854 45 999999996 57888999999995 6666544
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=364.32 Aligned_cols=210 Identities=20% Similarity=0.278 Sum_probs=173.3
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
-.|+++||+++| .. +...+|+||||+|++||.+||+|+||||||||+++|.|++.|. +|+|.+||.++..
T Consensus 1283 g~I~f~nVsf~Y-~~---~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~---~G~I~IdG~dI~~i~~ 1355 (1522)
T TIGR00957 1283 GRVEFRNYCLRY-RE---DLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESA---EGEIIIDGLNIAKIGL 1355 (1522)
T ss_pred CcEEEEEEEEEe-CC---CCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCC---CCeEEECCEEccccCH
Confidence 369999999994 21 2346999999999999999999999999999999999999774 8999999998642
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch-------hhCccC----CCCCh
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD-------AMNTRI----RRLSG 179 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~~----~~LSg 179 (449)
.+++++||||++.+|+. |++|||.... ..++ +.+.+.++..++.+ -+|+.+ .+|||
T Consensus 1356 ~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~------~~sd----eei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSg 1424 (1522)
T TIGR00957 1356 HDLRFKITIIPQDPVLFSG-SLRMNLDPFS------QYSD----EEVWWALELAHLKTFVSALPDKLDHECAEGGENLSV 1424 (1522)
T ss_pred HHHHhcCeEECCCCcccCc-cHHHHcCccc------CCCH----HHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCH
Confidence 24679999999999998 9999996211 1222 23445555555432 234444 57999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEE
Q 044030 180 GQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTV 259 (449)
Q Consensus 180 GerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv 259 (449)
|||||++|||||+++|+||+||||||+||+.+...|.+.|++..+ ++|||+++|+++ ....||+|++|++|+++
T Consensus 1425 GQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~----~~TvI~IAHRl~--ti~~~DrIlVld~G~Iv 1498 (1522)
T TIGR00957 1425 GQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFE----DCTVLTIAHRLN--TIMDYTRVIVLDKGEVA 1498 (1522)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcC----CCEEEEEecCHH--HHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999998753 449999999973 45569999999999999
Q ss_pred EecChhhHHH
Q 044030 260 YFGPATAANE 269 (449)
Q Consensus 260 ~~g~~~~~~~ 269 (449)
+.|+++++..
T Consensus 1499 E~G~~~eLl~ 1508 (1522)
T TIGR00957 1499 EFGAPSNLLQ 1508 (1522)
T ss_pred EECCHHHHHh
Confidence 9999988753
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=363.07 Aligned_cols=209 Identities=19% Similarity=0.311 Sum_probs=174.8
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
-.|+++||+++| .. +...+|+||||+|++||.+||+|+||||||||+++|.|+++|. +|+|.+||.++..
T Consensus 1307 G~I~f~nVsf~Y-~~---~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~---~G~I~IDG~di~~i~l 1379 (1560)
T PTZ00243 1307 GSLVFEGVQMRY-RE---GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVC---GGEIRVNGREIGAYGL 1379 (1560)
T ss_pred CeEEEEEEEEEe-CC---CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEcccCCH
Confidence 359999999994 21 2346999999999999999999999999999999999999874 8999999998642
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchh-------hCccC----CCCCh
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDA-------MNTRI----RRLSG 179 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~~----~~LSg 179 (449)
.++.++||||++.+|+. |++|||.... ..+ ++.+.+.++..++.+. .|+.+ .+|||
T Consensus 1380 ~~LR~~I~iVpQdp~LF~g-TIreNIdp~~------~~s----deeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSg 1448 (1560)
T PTZ00243 1380 RELRRQFSMIPQDPVLFDG-TVRQNVDPFL------EAS----SAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSV 1448 (1560)
T ss_pred HHHHhcceEECCCCccccc-cHHHHhCccc------CCC----HHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCH
Confidence 24679999999999987 9999995321 122 2346666776666543 34444 57999
Q ss_pred HHHHHHHHHHHHHhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeE
Q 044030 180 GQKRRVSISIEILTR-PKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQT 258 (449)
Q Consensus 180 GerqRv~ia~aL~~~-P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~i 258 (449)
|||||++|||||+++ |+|||||||||+||+.+...|.+.|++..+ ++|||+++|+++ ....||+|++|++|++
T Consensus 1449 GQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~----~~TvI~IAHRl~--ti~~~DrIlVLd~G~V 1522 (1560)
T PTZ00243 1449 GQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFS----AYTVITIAHRLH--TVAQYDKIIVMDHGAV 1522 (1560)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCC----CCEEEEEeccHH--HHHhCCEEEEEECCEE
Confidence 999999999999996 899999999999999999999999998753 349999999973 5577999999999999
Q ss_pred EEecChhhHH
Q 044030 259 VYFGPATAAN 268 (449)
Q Consensus 259 v~~g~~~~~~ 268 (449)
++.|+++++.
T Consensus 1523 vE~Gt~~eLl 1532 (1560)
T PTZ00243 1523 AEMGSPRELV 1532 (1560)
T ss_pred EEECCHHHHH
Confidence 9999998875
|
|
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-38 Score=350.12 Aligned_cols=221 Identities=30% Similarity=0.481 Sum_probs=200.5
Q ss_pred eeEEEEeeEEEEeecCcccccc-eeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc--
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSS-ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~-iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-- 112 (449)
..+..+|+++.| +.+. +++++|+.|++||+.|++|||||||||++|+|+|..+| ++|+++++|.+...
T Consensus 563 ~~~~~~~L~k~y------~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~---t~G~a~i~g~~i~~~~ 633 (885)
T KOG0059|consen 563 SALVLNNLSKVY------GGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKP---TSGEALIKGHDITVST 633 (885)
T ss_pred ceEEEcceeeee------cchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccC---CcceEEEecCcccccc
Confidence 457889999873 2222 99999999999999999999999999999999999877 49999999987532
Q ss_pred ----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHH
Q 044030 113 ----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSIS 188 (449)
Q Consensus 113 ----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia 188 (449)
.++.+||+||++.+++.+|.+|++.+.++++ +.+..+.++.++.+++.++|.+.++++++.+|||+|||+++|
T Consensus 634 ~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlr---G~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~a 710 (885)
T KOG0059|consen 634 DFQQVRKQLGYCPQFDALWEELTGREHLEFYARLR---GLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFA 710 (885)
T ss_pred chhhhhhhcccCCchhhhhhhccHHHHHHHHHHHc---CCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHH
Confidence 3467999999999999999999999999987 566777788899999999999999999999999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 189 IEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 189 ~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
.|++.+|++++|||||+|+||.+++.++++++++.+ .|+ .||++||.+ +|...+|||+.+|.+|++...|++++++
T Consensus 711 ialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k-~g~--aiiLTSHsM-eE~EaLCtR~aImv~G~l~ciGs~q~LK 786 (885)
T KOG0059|consen 711 IALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRK-NGK--AIILTSHSM-EEAEALCTRTAIMVIGQLRCIGSPQELK 786 (885)
T ss_pred HHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHh-cCC--EEEEEcCCH-HHHHHHhhhhheeecCeeEEecChHHHH
Confidence 999999999999999999999999999999999985 443 999999995 6899999999999999999999999998
Q ss_pred HHHH
Q 044030 269 EFFA 272 (449)
Q Consensus 269 ~~f~ 272 (449)
..|.
T Consensus 787 srfG 790 (885)
T KOG0059|consen 787 SRYG 790 (885)
T ss_pred hhcC
Confidence 7664
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-37 Score=334.15 Aligned_cols=207 Identities=22% Similarity=0.391 Sum_probs=166.2
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCc
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGT 116 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~ 116 (449)
+|+++||+++| +++.+|+||||+|++|+++||+||||||||||||+|+|.++|+ +|+|.++|.. .
T Consensus 1 ~i~i~nls~~~------g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd---~G~I~~~~~~------~ 65 (638)
T PRK10636 1 MIVFSSLQIRR------GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISAD---GGSYTFPGNW------Q 65 (638)
T ss_pred CEEEEEEEEEe------CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCCC------E
Confidence 37899999983 5578999999999999999999999999999999999998774 8999998842 3
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHh-----------------------ccC-CCCCCHHHHHHHHHHHHHHcCCc-hhhC
Q 044030 117 SAYVTQDDTLITTLTVKEAVYYSAQ-----------------------LQL-PDTMPKSDKKERAEVTIREMGLQ-DAMN 171 (449)
Q Consensus 117 i~yv~Q~~~l~~~lTv~e~l~~~~~-----------------------~~~-~~~~~~~~~~~~v~~~l~~lgL~-~~~~ 171 (449)
++|++|+...+ ..|+.+++.-... +.. .......+.+.++.++++.+|+. +..+
T Consensus 66 i~~~~q~~~~~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~ 144 (638)
T PRK10636 66 LAWVNQETPAL-PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLE 144 (638)
T ss_pred EEEEecCCCCC-CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhc
Confidence 78999865333 2465554421100 000 00000112345788999999997 5789
Q ss_pred ccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEE
Q 044030 172 TRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLC 251 (449)
Q Consensus 172 ~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~ 251 (449)
+++..|||||||||+||++|+.+|++|||||||++||+.+...+.+.|+++ +. |||++|||. ..+..+||+++
T Consensus 145 ~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~----~~--tviivsHd~-~~l~~~~d~i~ 217 (638)
T PRK10636 145 RPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY----QG--TLILISHDR-DFLDPIVDKII 217 (638)
T ss_pred CchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC----CC--eEEEEeCCH-HHHHHhcCEEE
Confidence 999999999999999999999999999999999999999999999998865 33 999999996 57889999999
Q ss_pred EeeCCeEE-EecChhh
Q 044030 252 LLSAGQTV-YFGPATA 266 (449)
Q Consensus 252 ~l~~G~iv-~~g~~~~ 266 (449)
+|++|+++ |.|+.+.
T Consensus 218 ~L~~G~i~~~~g~~~~ 233 (638)
T PRK10636 218 HIEQQSLFEYTGNYSS 233 (638)
T ss_pred EEeCCEEEEecCCHHH
Confidence 99999996 5676553
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=343.91 Aligned_cols=216 Identities=29% Similarity=0.451 Sum_probs=179.3
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
-.++++||+|.| + .+.+.+||+|+|+++++|+.+||+|||||||||.+-+|-..+.|+ +|.|.+||.+++.
T Consensus 986 G~I~~~~V~F~Y-P--sRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~---~G~V~IDg~dik~lnl 1059 (1228)
T KOG0055|consen 986 GDIEFRNVSFAY-P--TRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPD---AGKVKIDGVDIKDLNL 1059 (1228)
T ss_pred eEEEEeeeEeeC-C--CCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCcccccCCH
Confidence 359999999994 3 235678999999999999999999999999999999999999874 8999999988642
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHH-HHH--cCCchhhCccC----CCCChHHHH
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVT-IRE--MGLQDAMNTRI----RRLSGGQKR 183 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~-l~~--lgL~~~~~~~~----~~LSgGerq 183 (449)
.++++|.|.|+|.||.. |++||+.|+.. ..+.++..+.++.. +.. .+|.+-.|+++ .+|||||||
T Consensus 1060 ~~LR~~i~lVsQEP~LF~~-TIrENI~YG~~-----~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQ 1133 (1228)
T KOG0055|consen 1060 KWLRKQIGLVSQEPVLFNG-TIRENIAYGSE-----EVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQ 1133 (1228)
T ss_pred HHHHHhcceeccCchhhcc-cHHHHHhccCC-----CCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHH
Confidence 24689999999999987 99999999821 13333322211110 111 25566666666 589999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
|++||||+++||+||||||.||+||+++.+.+-+.|.+... |+|.|++.|.++ ..+.||.|+|+++|+++++|+
T Consensus 1134 RIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~----gRT~IvIAHRLS--TIqnaD~I~Vi~~G~VvE~Gt 1207 (1228)
T KOG0055|consen 1134 RIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAME----GRTTIVIAHRLS--TIQNADVIAVLKNGKVVEQGT 1207 (1228)
T ss_pred HHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhc----CCcEEEEecchh--hhhcCCEEEEEECCEEEeccc
Confidence 99999999999999999999999999999999999999873 459999999974 467899999999999999999
Q ss_pred hhhHHH
Q 044030 264 ATAANE 269 (449)
Q Consensus 264 ~~~~~~ 269 (449)
-+++..
T Consensus 1208 H~~L~~ 1213 (1228)
T KOG0055|consen 1208 HDELLA 1213 (1228)
T ss_pred HHHHHh
Confidence 988764
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=270.18 Aligned_cols=202 Identities=27% Similarity=0.407 Sum_probs=174.6
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---c
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---A 113 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---~ 113 (449)
+++++||+.. . ++...|-|+|++|.+||++.|||||||||||||.-+.|.+.+.-..+|++++|++..+. .
T Consensus 2 ~l~l~nvsl~-l-----~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~ 75 (213)
T COG4136 2 MLCLKNVSLR-L-----PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA 75 (213)
T ss_pred ceeeeeeeec-C-----CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchh
Confidence 5789999976 2 56789999999999999999999999999999999999998876789999999998643 3
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh
Q 044030 114 YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT 193 (449)
Q Consensus 114 ~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~ 193 (449)
.+++|.++||+.+||+++|.+|+.|+... .+.-..++..++..+++.||+...++.+..||||||-||++-|+|+.
T Consensus 76 qRq~GiLFQD~lLFphlsVg~Nl~fAlp~----~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla 151 (213)
T COG4136 76 QRQIGILFQDALLFPHLSVGQNLLFALPA----TLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLA 151 (213)
T ss_pred hhheeeeecccccccccccccceEEecCc----ccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHh
Confidence 57899999999999999999999987543 33344566778899999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEE
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCL 252 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~ 252 (449)
.|+.++||||+|.||..-+.++.+.+-.-.+..|. .+|++|||. .++. .-.||+-
T Consensus 152 ~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agi--Ptv~VTHD~-~Dvp-agsrVie 206 (213)
T COG4136 152 QPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGI--PTVQVTHDL-QDVP-AGSRVIE 206 (213)
T ss_pred CcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCC--CeEEEeccc-ccCC-CCCeeee
Confidence 99999999999999999999999998776667766 999999995 3443 3334443
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-37 Score=272.06 Aligned_cols=144 Identities=31% Similarity=0.475 Sum_probs=130.8
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcE
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTS 117 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i 117 (449)
++++|+++.| ++..+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|+++|. ..+
T Consensus 1 l~~~~l~~~~------~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~~~------~~i 65 (144)
T cd03221 1 IELENLSKTY------GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPD---EGIVTWGST------VKI 65 (144)
T ss_pred CEEEEEEEEE------CCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCe------EEE
Confidence 4688999873 2346999999999999999999999999999999999998774 899999985 358
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCE
Q 044030 118 AYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKL 197 (449)
Q Consensus 118 ~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~l 197 (449)
+|++| ||+||+||++||+||+.+|++
T Consensus 66 ~~~~~------------------------------------------------------lS~G~~~rv~laral~~~p~i 91 (144)
T cd03221 66 GYFEQ------------------------------------------------------LSGGEKMRLALAKLLLENPNL 91 (144)
T ss_pred EEEcc------------------------------------------------------CCHHHHHHHHHHHHHhcCCCE
Confidence 99998 999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCe
Q 044030 198 LFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQ 257 (449)
Q Consensus 198 lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~ 257 (449)
++|||||+|||+.++..+.+.|+++ +. |||++||++ +++..+||++++|++|+
T Consensus 92 lllDEP~~~LD~~~~~~l~~~l~~~----~~--til~~th~~-~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 92 LLLDEPTNHLDLESIEALEEALKEY----PG--TVILVSHDR-YFLDQVATKIIELEDGK 144 (144)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHc----CC--EEEEEECCH-HHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999876 23 999999996 57888999999999985
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-37 Score=357.80 Aligned_cols=209 Identities=27% Similarity=0.392 Sum_probs=166.5
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEEC-CEeccc---
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILIN-GHKKAL--- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~-g~~~~~--- 112 (449)
.|+++||++.| .. ...+++|+|+||+|++||++||+||||||||||+++|+|+++|. +|+|+++ |.++..
T Consensus 382 ~I~~~nVsf~Y-~~--~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~i~~g~~i~~~~~ 455 (1466)
T PTZ00265 382 KIQFKNVRFHY-DT--RKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPT---EGDIIINDSHNLKDINL 455 (1466)
T ss_pred cEEEEEEEEEc-CC--CCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCC---CCeEEEeCCcchhhCCH
Confidence 68999999983 21 12347999999999999999999999999999999999999874 8999995 565421
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccC----------CCC-----------------------------C---
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQL----------PDT-----------------------------M--- 148 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~----------~~~-----------------------------~--- 148 (449)
.++.++||+|++.+|+. |++||+.++..... +.. .
T Consensus 456 ~~lr~~Ig~V~Q~~~LF~~-TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (1466)
T PTZ00265 456 KWWRSKIGVVSQDPLLFSN-SIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNEL 534 (1466)
T ss_pred HHHHHhccEecccccchhc-cHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhh
Confidence 13569999999999985 99999998642100 000 0
Q ss_pred ------CHHHHHHHHHHHHHHcCCchhh-----------CccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 044030 149 ------PKSDKKERAEVTIREMGLQDAM-----------NTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAA 211 (449)
Q Consensus 149 ------~~~~~~~~v~~~l~~lgL~~~~-----------~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~ 211 (449)
.....++.+.++++.+++.+.. +..+..||||||||++|||||+.+|+|||||||||+||+.+
T Consensus 535 l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~s 614 (1466)
T PTZ00265 535 IEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKS 614 (1466)
T ss_pred hhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHH
Confidence 0001224566777777765542 34567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCC
Q 044030 212 SYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAG 256 (449)
Q Consensus 212 ~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G 256 (449)
+..+.+.|++++++.|+ |+|+++|+++ .+ +.||+|++|++|
T Consensus 615 e~~i~~~L~~~~~~~g~--TvIiIsHrls-~i-~~aD~Iivl~~g 655 (1466)
T PTZ00265 615 EYLVQKTINNLKGNENR--ITIIIAHRLS-TI-RYANTIFVLSNR 655 (1466)
T ss_pred HHHHHHHHHHHhhcCCC--EEEEEeCCHH-HH-HhCCEEEEEeCC
Confidence 99999999999753455 9999999974 44 789999999986
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=329.80 Aligned_cols=205 Identities=20% Similarity=0.375 Sum_probs=168.5
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccC
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYG 115 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~ 115 (449)
..|+++||++.| . +.+.+|+|+||+|++|++++|+||||||||||||+|+|+++|. +|+|.+++. .
T Consensus 507 ~~L~~~~ls~~y-~----~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~---~G~I~~~~~------~ 572 (718)
T PLN03073 507 PIISFSDASFGY-P----GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPS---SGTVFRSAK------V 572 (718)
T ss_pred ceEEEEeeEEEe-C----CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CceEEECCc------e
Confidence 469999999983 1 2346999999999999999999999999999999999999774 899998763 3
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccCCCCChHHHHHHHHHHHHHhC
Q 044030 116 TSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSGGQKRRVSISIEILTR 194 (449)
Q Consensus 116 ~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGerqRv~ia~aL~~~ 194 (449)
.++|++|+. ++.+++.++..+......+ .. ..+++.++++.+|+. +..++++..|||||||||+||++|+.+
T Consensus 573 ~igyv~Q~~--~~~l~~~~~~~~~~~~~~~-~~----~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~ 645 (718)
T PLN03073 573 RMAVFSQHH--VDGLDLSSNPLLYMMRCFP-GV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK 645 (718)
T ss_pred eEEEEeccc--cccCCcchhHHHHHHHhcC-CC----CHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcC
Confidence 589999985 3445666664332111111 11 134578899999997 478999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEE-EecChhhHH
Q 044030 195 PKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTV-YFGPATAAN 268 (449)
Q Consensus 195 P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv-~~g~~~~~~ 268 (449)
|++|||||||+|||+.++..+++.|+++ + | |||++|||+ ..+..+||++++|++|+++ +.|+.++..
T Consensus 646 p~lLLLDEPT~~LD~~s~~~l~~~L~~~----~-g-tvIivSHd~-~~i~~~~drv~~l~~G~i~~~~g~~~~~~ 713 (718)
T PLN03073 646 PHILLLDEPSNHLDLDAVEALIQGLVLF----Q-G-GVLMVSHDE-HLISGSVDELWVVSEGKVTPFHGTFHDYK 713 (718)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHc----C-C-EEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCCHHHHH
Confidence 9999999999999999999998888764 2 3 999999996 5788999999999999998 778776543
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-37 Score=280.15 Aligned_cols=159 Identities=23% Similarity=0.312 Sum_probs=134.5
Q ss_pred ccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHH
Q 044030 55 SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKE 134 (449)
Q Consensus 55 ~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e 134 (449)
.+.+|+|+||++++|++++|+||||||||||||+|.+ .+|+|.++|.........++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~-------~~G~v~~~~~~~~~~~~~~~~~~q------------ 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY-------ASGKARLISFLPKFSRNKLIFIDQ------------ 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh-------cCCcEEECCcccccccccEEEEhH------------
Confidence 4579999999999999999999999999999999963 279999988732222234778776
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch-hhCccCCCCChHHHHHHHHHHHHHhC--CCEEEEeCCCCCCCHHH
Q 044030 135 AVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD-AMNTRIRRLSGGQKRRVSISIEILTR--PKLLFLDEPTSGLDSAA 211 (449)
Q Consensus 135 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LSgGerqRv~ia~aL~~~--P~llllDEPtsgLD~~~ 211 (449)
.++++.++|.. ..+++++.||||||||++||+||+.+ |+++||||||+|||+.+
T Consensus 68 -----------------------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~ 124 (176)
T cd03238 68 -----------------------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQD 124 (176)
T ss_pred -----------------------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHH
Confidence 23577788875 48999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 212 SYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 212 ~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
+..+.+.|+++++ .|. |||++||++. .+ ..||++++|.+|+...
T Consensus 125 ~~~l~~~l~~~~~-~g~--tvIivSH~~~-~~-~~~d~i~~l~~g~~~~ 168 (176)
T cd03238 125 INQLLEVIKGLID-LGN--TVILIEHNLD-VL-SSADWIIDFGPGSGKS 168 (176)
T ss_pred HHHHHHHHHHHHh-CCC--EEEEEeCCHH-HH-HhCCEEEEECCCCCCC
Confidence 9999999999974 455 9999999974 44 6899999997755433
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-37 Score=274.70 Aligned_cols=224 Identities=24% Similarity=0.385 Sum_probs=194.4
Q ss_pred eEEEEeeEEEEeecC---cccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecc--
Q 044030 37 FLTWKDLTVTIVSNG---KKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKA-- 111 (449)
Q Consensus 37 ~l~~~nls~~~~~~~---~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~-- 111 (449)
.++++|+++++.+.. .+....+++.|||++++|+.+||+|.||||||||.|+|+|..+| ++|+|.+||++..
T Consensus 4 LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~P---TsG~il~n~~~L~~~ 80 (267)
T COG4167 4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP---TSGEILINDHPLHFG 80 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCC---CCceEEECCcccccc
Confidence 368899998842211 12346799999999999999999999999999999999999987 5999999998753
Q ss_pred ---cccCcEEEEcCCCC--CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCC-chhhCccCCCCChHHHHHH
Q 044030 112 ---LAYGTSAYVTQDDT--LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGL-QDAMNTRIRRLSGGQKRRV 185 (449)
Q Consensus 112 ---~~~~~i~yv~Q~~~--l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-~~~~~~~~~~LSgGerqRv 185 (449)
.+.++|-++|||++ +.|.+.+.+-+....++ ...+....+.+++.+.|..+|| .+.++-++..||-||||||
T Consensus 81 Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l--~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRV 158 (267)
T COG4167 81 DYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRL--NTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRV 158 (267)
T ss_pred chHhhhhheeeeecCCccccChhhhhhhHhcchhhh--cccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHH
Confidence 23467999999974 67888888888776554 3456677788899999999998 5788999999999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChh
Q 044030 186 SISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPAT 265 (449)
Q Consensus 186 ~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~ 265 (449)
++||||+.+|+++|.||..++||...+.+++++.-++.++.|. +-|.++.+. .-+.+++|+|+||++|++++.|++.
T Consensus 159 aLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~Gi--SyiYV~Qhl-G~iKHi~D~viVM~EG~vvE~G~t~ 235 (267)
T COG4167 159 ALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGI--SYIYVTQHI-GMIKHISDQVLVMHEGEVVERGSTA 235 (267)
T ss_pred HHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCc--eEEEEechh-hHhhhhcccEEEEecCceeecCChh
Confidence 9999999999999999999999999999999999999988876 999999996 5799999999999999999999998
Q ss_pred hHH
Q 044030 266 AAN 268 (449)
Q Consensus 266 ~~~ 268 (449)
++.
T Consensus 236 ~v~ 238 (267)
T COG4167 236 DVL 238 (267)
T ss_pred hhh
Confidence 763
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=356.64 Aligned_cols=208 Identities=22% Similarity=0.298 Sum_probs=174.5
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
-.|+++||+++| .. +...+|+||||+|++||.+||+|+||||||||+++|+|+++ .+|+|.+||.++..
T Consensus 1216 g~I~f~nVs~~Y-~~---~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~----~~G~I~IdG~di~~i~~ 1287 (1490)
T TIGR01271 1216 GQMDVQGLTAKY-TE---AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS----TEGEIQIDGVSWNSVTL 1287 (1490)
T ss_pred CeEEEEEEEEEe-CC---CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC----CCcEEEECCEEcccCCH
Confidence 369999999994 21 34679999999999999999999999999999999999974 38999999998642
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchh-------hCccC----CCCCh
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDA-------MNTRI----RRLSG 179 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~~----~~LSg 179 (449)
.+++++||||++.+|+. |++|||.... ..+ ++.+.++++..+|.+. +|+.+ .+|||
T Consensus 1288 ~~lR~~is~IpQdp~LF~G-TIR~NLdp~~------~~t----deei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSg 1356 (1490)
T TIGR01271 1288 QTWRKAFGVIPQKVFIFSG-TFRKNLDPYE------QWS----DEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSN 1356 (1490)
T ss_pred HHHHhceEEEeCCCccCcc-CHHHHhCccc------CCC----HHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCH
Confidence 24679999999999998 9999995421 112 3456677777777543 23333 47999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEE
Q 044030 180 GQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTV 259 (449)
Q Consensus 180 GerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv 259 (449)
|||||++|||||+++|+||+||||||+||+.+...|.+.|++..+ ++|||+++|+++ ....||+|++|++|+++
T Consensus 1357 GQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~----~~TvI~IaHRl~--ti~~~DrIlvL~~G~iv 1430 (1490)
T TIGR01271 1357 GHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFS----NCTVILSEHRVE--ALLECQQFLVIEGSSVK 1430 (1490)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC----CCEEEEEecCHH--HHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999998753 349999999973 45569999999999999
Q ss_pred EecChhhHH
Q 044030 260 YFGPATAAN 268 (449)
Q Consensus 260 ~~g~~~~~~ 268 (449)
..|+++++.
T Consensus 1431 E~g~p~~Ll 1439 (1490)
T TIGR01271 1431 QYDSIQKLL 1439 (1490)
T ss_pred EeCCHHHHH
Confidence 999998875
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=278.74 Aligned_cols=154 Identities=27% Similarity=0.393 Sum_probs=134.2
Q ss_pred EeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEE
Q 044030 41 KDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYV 120 (449)
Q Consensus 41 ~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv 120 (449)
.||++.| +++.+++++ +++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.+ ++|+
T Consensus 4 ~~l~~~~------~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~-------i~~~ 66 (177)
T cd03222 4 PDCVKRY------GVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPN---GDNDEWDGIT-------PVYK 66 (177)
T ss_pred CCeEEEE------CCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CcEEEECCEE-------EEEE
Confidence 5777772 456789985 999999999999999999999999999999774 8999999863 7888
Q ss_pred cCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEE
Q 044030 121 TQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFL 200 (449)
Q Consensus 121 ~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llll 200 (449)
+|+.. ||||||||++||++|+.+|++++|
T Consensus 67 ~q~~~---------------------------------------------------LSgGq~qrv~laral~~~p~lllL 95 (177)
T cd03222 67 PQYID---------------------------------------------------LSGGELQRVAIAAALLRNATFYLF 95 (177)
T ss_pred cccCC---------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEE
Confidence 88532 999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEe--cChh
Q 044030 201 DEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYF--GPAT 265 (449)
Q Consensus 201 DEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~--g~~~ 265 (449)
||||+|||+.++..+.+.|++++++.+. |||++||++ ..+..+||++++|+++-.++. |.|.
T Consensus 96 DEPts~LD~~~~~~l~~~l~~~~~~~~~--tiiivsH~~-~~~~~~~d~i~~l~~~~~~~~~~~~~~ 159 (177)
T cd03222 96 DEPSAYLDIEQRLNAARAIRRLSEEGKK--TALVVEHDL-AVLDYLSDRIHVFEGEPGVYGIASQPK 159 (177)
T ss_pred ECCcccCCHHHHHHHHHHHHHHHHcCCC--EEEEEECCH-HHHHHhCCEEEEEcCCCccceeccCCc
Confidence 9999999999999999999999755334 999999996 578889999999998766654 5554
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=328.49 Aligned_cols=206 Identities=23% Similarity=0.328 Sum_probs=164.5
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCc
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGT 116 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~ 116 (449)
+|+++||+++| +++.+|+||||+|++|+++||+||||||||||||+|+|+.+|+ +|+|.++|.. .
T Consensus 3 ~l~i~~ls~~~------~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~---~G~I~~~~~~------~ 67 (635)
T PRK11147 3 LISIHGAWLSF------SDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLD---DGRIIYEQDL------I 67 (635)
T ss_pred EEEEeeEEEEe------CCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CeEEEeCCCC------E
Confidence 58999999983 4567999999999999999999999999999999999998774 8999998731 2
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHH------------------------------hccCC-CCCCHHHHHHHHHHHHHHcC
Q 044030 117 SAYVTQDDTLITTLTVKEAVYYSA------------------------------QLQLP-DTMPKSDKKERAEVTIREMG 165 (449)
Q Consensus 117 i~yv~Q~~~l~~~lTv~e~l~~~~------------------------------~~~~~-~~~~~~~~~~~v~~~l~~lg 165 (449)
++|++|.+......+|.+++..+. .+... ........+.++.++++.+|
T Consensus 68 ~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 147 (635)
T PRK11147 68 VARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLG 147 (635)
T ss_pred EEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCC
Confidence 678887654333346665542110 00000 00001123456889999999
Q ss_pred CchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHh
Q 044030 166 LQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQ 245 (449)
Q Consensus 166 L~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~ 245 (449)
+. .++++.+|||||||||+||++|+.+|+||||||||++||+.++..+.+.|+++. . |||++|||+ ..+..
T Consensus 148 l~--~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~----~--tvlivsHd~-~~l~~ 218 (635)
T PRK11147 148 LD--PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ----G--SIIFISHDR-SFIRN 218 (635)
T ss_pred CC--CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC----C--EEEEEeCCH-HHHHH
Confidence 97 388999999999999999999999999999999999999999999999998872 2 999999996 57889
Q ss_pred hcCeEEEeeCCeEE-EecChhh
Q 044030 246 LFHNLCLLSAGQTV-YFGPATA 266 (449)
Q Consensus 246 ~~D~v~~l~~G~iv-~~g~~~~ 266 (449)
+||++++|++|+++ +.|+.++
T Consensus 219 ~~d~i~~L~~G~i~~~~g~~~~ 240 (635)
T PRK11147 219 MATRIVDLDRGKLVSYPGNYDQ 240 (635)
T ss_pred hcCeEEEEECCEEEEecCCHHH
Confidence 99999999999997 4577654
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=328.88 Aligned_cols=193 Identities=21% Similarity=0.339 Sum_probs=160.0
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCc
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGT 116 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~ 116 (449)
.++++||++. +. +++.+|+|+||++++||+++|+||||||||||+++|+|++++. +|+|.+++ ++.
T Consensus 451 ~i~~~nv~~~-~~----~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~---~G~i~~~~------~~~ 516 (659)
T TIGR00954 451 GIKFENIPLV-TP----NGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVY---GGRLTKPA------KGK 516 (659)
T ss_pred eEEEEeeEEE-CC----CCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEeecC------CCc
Confidence 5899999997 32 2357999999999999999999999999999999999998764 89998865 346
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccC---------CCCChHHHHHHHH
Q 044030 117 SAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRI---------RRLSGGQKRRVSI 187 (449)
Q Consensus 117 i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~---------~~LSgGerqRv~i 187 (449)
++||+|++.+++. |++||+.++...... ......++++.++++.+++.+..+++. ..||||||||++|
T Consensus 517 i~~v~Q~~~l~~~-tv~eni~~~~~~~~~--~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~i 593 (659)
T TIGR00954 517 LFYVPQRPYMTLG-TLRDQIIYPDSSEDM--KRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAM 593 (659)
T ss_pred EEEECCCCCCCCc-CHHHHHhcCCChhhh--hccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHH
Confidence 9999999998887 999999875422100 000112345778899999987766643 7899999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEee
Q 044030 188 SIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLS 254 (449)
Q Consensus 188 a~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~ 254 (449)
||||+++|+++||||||+|||+.++..+.+.+++ .|. |+|++||+++ ..+.||++++|+
T Consensus 594 ARal~~~p~illLDEpts~LD~~~~~~l~~~l~~----~~~--tvI~isH~~~--~~~~~d~il~l~ 652 (659)
T TIGR00954 594 ARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE----FGI--TLFSVSHRKS--LWKYHEYLLYMD 652 (659)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH----cCC--EEEEEeCchH--HHHhCCEEEEEe
Confidence 9999999999999999999999999999998865 244 9999999974 457899999997
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=305.39 Aligned_cols=215 Identities=27% Similarity=0.416 Sum_probs=177.8
Q ss_pred CCeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-
Q 044030 34 DGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL- 112 (449)
Q Consensus 34 ~~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~- 112 (449)
..-.++++||++.| . .++++|+||||++.||+.+|++|||||||||++++|..+... .+|.|.+||+++..
T Consensus 534 ~~G~i~fsnvtF~Y-~----p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv---~sGsI~iDgqdIrnv 605 (790)
T KOG0056|consen 534 TQGKIEFSNVTFAY-D----PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDV---NSGSITIDGQDIRNV 605 (790)
T ss_pred cCCeEEEEEeEEec-C----CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhc---cCceEEEcCchHHHH
Confidence 34579999999994 3 467899999999999999999999999999999999998865 49999999998642
Q ss_pred ----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHH--HHHHHHHH-HHcCCchhhCccCC----CCChHH
Q 044030 113 ----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDK--KERAEVTI-REMGLQDAMNTRIR----RLSGGQ 181 (449)
Q Consensus 113 ----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~--~~~v~~~l-~~lgL~~~~~~~~~----~LSgGe 181 (449)
.++.||.||||..+|.+ |+..|+.|+..- .+.++. .+++..+- ..+++.+..+++++ .|||||
T Consensus 606 t~~SLRs~IGVVPQDtvLFNd-TI~yNIryak~~-----AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGE 679 (790)
T KOG0056|consen 606 TQSSLRSSIGVVPQDTVLFND-TILYNIRYAKPS-----ASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGE 679 (790)
T ss_pred HHHHHHHhcCcccCcceeecc-eeeeheeecCCC-----CChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcc
Confidence 24679999999999987 999999886421 122222 12222222 33567776777764 699999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEe
Q 044030 182 KRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYF 261 (449)
Q Consensus 182 rqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~ 261 (449)
||||+|||+++++|.+++|||.||+||..+.+.|...|.+++. ++|-|++.|..+ .+ -.+|.|+++++|+|++.
T Consensus 680 KQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca----~RTtIVvAHRLS-Ti-vnAD~ILvi~~G~IvEr 753 (790)
T KOG0056|consen 680 KQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA----NRTTIVVAHRLS-TI-VNADLILVISNGRIVER 753 (790)
T ss_pred hhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc----CCceEEEeeeeh-he-ecccEEEEEeCCeEeec
Confidence 9999999999999999999999999999999999999999994 449999999975 34 46899999999999999
Q ss_pred cChhhHH
Q 044030 262 GPATAAN 268 (449)
Q Consensus 262 g~~~~~~ 268 (449)
|.-+++.
T Consensus 754 G~HeeLl 760 (790)
T KOG0056|consen 754 GRHEELL 760 (790)
T ss_pred CcHHHHH
Confidence 9988765
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=345.70 Aligned_cols=201 Identities=27% Similarity=0.409 Sum_probs=165.3
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCce-eEEEECCEecccccC
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQT-GKILINGHKKALAYG 115 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~-G~I~~~g~~~~~~~~ 115 (449)
.++++|+++.| .. ..++.+|+|+|++|++|+.++|+||+|||||||+++|+|.+++ .+ |+|.+.|
T Consensus 614 ~I~~~nvsf~y-~~--~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~---~~GG~I~l~~-------- 679 (1622)
T PLN03130 614 AISIKNGYFSW-DS--KAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPP---RSDASVVIRG-------- 679 (1622)
T ss_pred ceEEEeeEEEc-cC--CCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhcc---CCCceEEEcC--------
Confidence 58999999983 21 1235799999999999999999999999999999999999977 48 8998643
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhh-------Cc----cCCCCChHHHHH
Q 044030 116 TSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAM-------NT----RIRRLSGGQKRR 184 (449)
Q Consensus 116 ~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~----~~~~LSgGerqR 184 (449)
.++||+|++.+++. |++|||.|+... + +++.+++++..+|.+.. ++ +..+||||||||
T Consensus 680 ~Iayv~Q~p~Lfng-TIreNI~fg~~~------d----~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQR 748 (1622)
T PLN03130 680 TVAYVPQVSWIFNA-TVRDNILFGSPF------D----PERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQR 748 (1622)
T ss_pred eEEEEcCccccCCC-CHHHHHhCCCcc------c----HHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHH
Confidence 58999999999986 999999987421 1 23455556655554322 33 335799999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 185 VSISIEILTRPKLLFLDEPTSGLDSAASYYVMS-RIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 185 v~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~-~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
++||||++.+|+++|||||||+||+.+..++++ .++.+. + |+|+|++||++ .....||+|++|++|+++..|+
T Consensus 749 IaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~---~kTvIlVTH~l--~~l~~aD~Ii~L~~G~i~e~Gt 822 (1622)
T PLN03130 749 VSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-R---GKTRVLVTNQL--HFLSQVDRIILVHEGMIKEEGT 822 (1622)
T ss_pred HHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh-c---CCEEEEEECCH--hHHHhCCEEEEEeCCEEEEeCC
Confidence 999999999999999999999999999998875 566554 2 45999999997 3577899999999999999999
Q ss_pred hhhHH
Q 044030 264 ATAAN 268 (449)
Q Consensus 264 ~~~~~ 268 (449)
.+++.
T Consensus 823 ~~eL~ 827 (1622)
T PLN03130 823 YEELS 827 (1622)
T ss_pred HHHHH
Confidence 88775
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-35 Score=342.93 Aligned_cols=202 Identities=27% Similarity=0.381 Sum_probs=162.8
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCc
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGT 116 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~ 116 (449)
.++++|+++.| .. ..++++|+|+||++++||.++|+||+|||||||+++|+|.++|. +|.+.. .++.
T Consensus 614 ~I~~~~vsF~y-~~--~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~---~G~i~~-------~~~~ 680 (1495)
T PLN03232 614 AISIKNGYFSW-DS--KTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHA---ETSSVV-------IRGS 680 (1495)
T ss_pred cEEEEeeEEEc-CC--CCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCccc---CCCEEE-------ecCc
Confidence 58999999983 21 12357999999999999999999999999999999999999774 665521 1346
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhh-------Ccc----CCCCChHHHHHH
Q 044030 117 SAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAM-------NTR----IRRLSGGQKRRV 185 (449)
Q Consensus 117 i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~----~~~LSgGerqRv 185 (449)
++||+|++.+++. |++|||.|+.. .+. ++.+++++..+|.+.. ++. ..+||||||||+
T Consensus 681 Iayv~Q~p~Lf~g-TIreNI~fg~~------~~~----e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRI 749 (1495)
T PLN03232 681 VAYVPQVSWIFNA-TVRENILFGSD------FES----ERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRV 749 (1495)
T ss_pred EEEEcCccccccc-cHHHHhhcCCc------cCH----HHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHH
Confidence 9999999999987 99999998742 122 3345555555553322 233 357999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecCh
Q 044030 186 SISIEILTRPKLLFLDEPTSGLDSAASYYVMSR-IAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264 (449)
Q Consensus 186 ~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~-l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~ 264 (449)
+||||++.+|+|++||||||+||+.++.++++. ++... . ++|+|++||++. ....||+|++|++|+++..|+.
T Consensus 750 aLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l--~--~kT~IlvTH~~~--~l~~aD~Ii~L~~G~i~~~Gt~ 823 (1495)
T PLN03232 750 SMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDEL--K--GKTRVLVTNQLH--FLPLMDRIILVSEGMIKEEGTF 823 (1495)
T ss_pred HHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhh--c--CCEEEEEECChh--hHHhCCEEEEEeCCEEEEecCH
Confidence 999999999999999999999999999988765 55443 2 459999999973 5678999999999999999998
Q ss_pred hhHH
Q 044030 265 TAAN 268 (449)
Q Consensus 265 ~~~~ 268 (449)
+++.
T Consensus 824 ~eL~ 827 (1495)
T PLN03232 824 AELS 827 (1495)
T ss_pred HHHH
Confidence 8765
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=340.08 Aligned_cols=206 Identities=22% Similarity=0.351 Sum_probs=165.0
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCc
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGT 116 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~ 116 (449)
.++++|+++.| .. ..+.+|+|+|+++++|++++|+||||||||||+++|+|.++| .+|+|.++| .
T Consensus 636 ~i~~~~~~~~~-~~---~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~---~~G~i~~~g--------~ 700 (1522)
T TIGR00957 636 SITVHNATFTW-AR---DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK---VEGHVHMKG--------S 700 (1522)
T ss_pred cEEEEEeEEEc-CC---CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcc---CCcEEEECC--------E
Confidence 68999999983 21 235799999999999999999999999999999999999977 489999987 3
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHH--HHHHHc-----CCchhhCccCCCCChHHHHHHHHHH
Q 044030 117 SAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAE--VTIREM-----GLQDAMNTRIRRLSGGQKRRVSISI 189 (449)
Q Consensus 117 i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~--~~l~~l-----gL~~~~~~~~~~LSgGerqRv~ia~ 189 (449)
++||+|++.+++ .|++||+.|+... +.+..++.++ ++.+.+ |.+...+.++.+||||||||++|||
T Consensus 701 i~yv~Q~~~l~~-~Ti~eNI~~g~~~------~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLAR 773 (1522)
T TIGR00957 701 VAYVPQQAWIQN-DSLRENILFGKAL------NEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLAR 773 (1522)
T ss_pred EEEEcCCccccC-CcHHHHhhcCCcc------CHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHH
Confidence 899999998875 5999999886421 1222211111 112222 2223445667899999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-hcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 190 EILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQ-RDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 190 aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~-~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
|++.+|++++||||||+||+.++..+++.+.+... .. ++|+|++||++. . ...||+|++|++|+++..|+.+++.
T Consensus 774 Al~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~--~~tvIlvTH~~~-~-l~~~D~ii~l~~G~i~~~g~~~~l~ 849 (1522)
T TIGR00957 774 AVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLK--NKTRILVTHGIS-Y-LPQVDVIIVMSGGKISEMGSYQELL 849 (1522)
T ss_pred HHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhc--CCEEEEEeCChh-h-hhhCCEEEEecCCeEEeeCCHHHHH
Confidence 99999999999999999999999999999975321 22 349999999974 3 4569999999999999999988765
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=260.75 Aligned_cols=151 Identities=38% Similarity=0.621 Sum_probs=133.5
Q ss_pred EEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----cc
Q 044030 40 WKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-----AY 114 (449)
Q Consensus 40 ~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-----~~ 114 (449)
++|+++.| .++.+++++|+++++|++++|+||||||||||+++|+|.+++. +|+|+++|.+... ..
T Consensus 2 ~~~~~~~~------~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~---~G~i~~~~~~~~~~~~~~~~ 72 (157)
T cd00267 2 IENLSFRY------GGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT---SGEILIDGKDIAKLPLEELR 72 (157)
T ss_pred eEEEEEEe------CCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEEcccCCHHHHH
Confidence 57888873 2347999999999999999999999999999999999998764 8999999986432 12
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhC
Q 044030 115 GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTR 194 (449)
Q Consensus 115 ~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~ 194 (449)
+.++|++| |||||+||++||++++.+
T Consensus 73 ~~i~~~~q------------------------------------------------------lS~G~~~r~~l~~~l~~~ 98 (157)
T cd00267 73 RRIGYVPQ------------------------------------------------------LSGGQRQRVALARALLLN 98 (157)
T ss_pred hceEEEee------------------------------------------------------CCHHHHHHHHHHHHHhcC
Confidence 45888888 999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCe
Q 044030 195 PKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQ 257 (449)
Q Consensus 195 P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~ 257 (449)
|++++|||||+|||+.++..+.+.|+++++. +. |+|++||++ .++...||++++|++|+
T Consensus 99 ~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~-~~--tii~~sh~~-~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 99 PDLLLLDEPTSGLDPASRERLLELLRELAEE-GR--TVIIVTHDP-ELAELAADRVIVLKDGK 157 (157)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CC--EEEEEeCCH-HHHHHhCCEEEEEeCcC
Confidence 9999999999999999999999999998754 45 999999996 57888899999999875
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=316.06 Aligned_cols=180 Identities=27% Similarity=0.386 Sum_probs=154.1
Q ss_pred cceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEE-----------ECCEeccc-------ccCcE
Q 044030 56 SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKIL-----------INGHKKAL-------AYGTS 117 (449)
Q Consensus 56 ~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~-----------~~g~~~~~-------~~~~i 117 (449)
..+|++++ .+++|+++||+||||||||||||+|+|+++|+ +|+|. ++|.++.. ....+
T Consensus 87 ~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~---~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~ 162 (590)
T PRK13409 87 GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPN---LGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKV 162 (590)
T ss_pred ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCC---CccccCCCcHHHHHHHhCChHHHHHHHHHhccCcce
Confidence 36999999 99999999999999999999999999999875 89997 88976421 11235
Q ss_pred EEEcCCCCCCCCC---CHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhC
Q 044030 118 AYVTQDDTLITTL---TVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTR 194 (449)
Q Consensus 118 ~yv~Q~~~l~~~l---Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~ 194 (449)
+|.+|....+|.+ ||.|++.+. +.+.+++++++.++|.+..++.+.+|||||||||+||+||+.+
T Consensus 163 ~~~~q~~~~~p~~~~~tv~e~l~~~------------~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~ 230 (590)
T PRK13409 163 VHKPQYVDLIPKVFKGKVRELLKKV------------DERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRD 230 (590)
T ss_pred eecccchhhhhhhhcchHHHHHHhh------------hHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 6666654444433 999998531 1235688999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCC
Q 044030 195 PKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAG 256 (449)
Q Consensus 195 P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G 256 (449)
|+++||||||++||+.++..+.+.|+++++ |. |||+++|++ +++..++|++++|++|
T Consensus 231 p~lllLDEPts~LD~~~~~~l~~~i~~l~~--g~--tvIivsHd~-~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 231 ADFYFFDEPTSYLDIRQRLNVARLIRELAE--GK--YVLVVEHDL-AVLDYLADNVHIAYGE 287 (590)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CC--EEEEEeCCH-HHHHHhCCEEEEEeCC
Confidence 999999999999999999999999999974 66 999999996 5788999999999863
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=307.91 Aligned_cols=205 Identities=28% Similarity=0.436 Sum_probs=172.9
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCc
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGT 116 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~ 116 (449)
+|+++|+++.| +.+.+|+|+|+++.+|+.+||+|+||||||||||+|+|...|+ +|+|...+. -+
T Consensus 3 ~i~~~~ls~~~------g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~---~G~i~~~~~------~~ 67 (530)
T COG0488 3 MITLENLSLAY------GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPKG------LR 67 (530)
T ss_pred eEEEeeeEEee------CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCC---CCeEeecCC------ce
Confidence 68999999983 6789999999999999999999999999999999999999774 899987652 25
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhcc-------------CCCC--------------CCHHHHHHHHHHHHHHcCCchh
Q 044030 117 SAYVTQDDTLITTLTVKEAVYYSAQLQ-------------LPDT--------------MPKSDKKERAEVTIREMGLQDA 169 (449)
Q Consensus 117 i~yv~Q~~~l~~~lTv~e~l~~~~~~~-------------~~~~--------------~~~~~~~~~v~~~l~~lgL~~~ 169 (449)
++|++|++.+.+..||.+.+.-+..-. ++.. ....+.+.++..++..+|+.+.
T Consensus 68 v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~ 147 (530)
T COG0488 68 VGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE 147 (530)
T ss_pred EEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc
Confidence 899999999999999999886543210 0000 0001123567888999999877
Q ss_pred hCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCe
Q 044030 170 MNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHN 249 (449)
Q Consensus 170 ~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~ 249 (449)
++++.+||||||+||+||++|+.+|++|||||||+.||..+..-+-+.|+++. | |+|+|||| +..+-+.|++
T Consensus 148 -~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~-----g-tviiVSHD-R~FLd~V~t~ 219 (530)
T COG0488 148 -DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYP-----G-TVIVVSHD-RYFLDNVATH 219 (530)
T ss_pred -cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCC-----C-cEEEEeCC-HHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999998763 5 99999999 6889999999
Q ss_pred EEEeeCCeEEE-ecCh
Q 044030 250 LCLLSAGQTVY-FGPA 264 (449)
Q Consensus 250 v~~l~~G~iv~-~g~~ 264 (449)
|+-++.|++.. .|.-
T Consensus 220 I~~ld~g~l~~y~Gny 235 (530)
T COG0488 220 ILELDRGKLTPYKGNY 235 (530)
T ss_pred eEEecCCceeEecCCH
Confidence 99999998754 4543
|
|
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=265.13 Aligned_cols=187 Identities=27% Similarity=0.416 Sum_probs=162.6
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccccc--
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAY-- 114 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~-- 114 (449)
.++.+|++.. ++.+.++.++||++.+||++-|.|||||||||||++|+|+..|+ +|+|.++|.++....
T Consensus 2 ~L~a~~L~~~------R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~---~G~v~~~~~~i~~~~~~ 72 (209)
T COG4133 2 MLEAENLSCE------RGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD---AGEVYWQGEPIQNVRES 72 (209)
T ss_pred cchhhhhhhc------cCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCC---CCeEEecCCCCccchhh
Confidence 4567788876 26789999999999999999999999999999999999999885 999999998764322
Q ss_pred --CcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHH
Q 044030 115 --GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEIL 192 (449)
Q Consensus 115 --~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~ 192 (449)
+.+-|+--.+.+=+.|||+|||.|...+... .....+.+.++.+||....|.+++.||-||||||+|||-++
T Consensus 73 ~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~------~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~l 146 (209)
T COG4133 73 YHQALLYLGHQPGIKTELTALENLHFWQRFHGS------GNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWL 146 (209)
T ss_pred HHHHHHHhhccccccchhhHHHHHHHHHHHhCC------CchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHc
Confidence 3466887888888999999999998876532 12345788999999999999999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcH
Q 044030 193 TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSS 241 (449)
Q Consensus 193 ~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~ 241 (449)
+.+++.||||||++||......+-.++..-+.+ |- .||.+||||..
T Consensus 147 s~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~-GG--iVllttHq~l~ 192 (209)
T COG4133 147 SPAPLWILDEPFTALDKEGVALLTALMAAHAAQ-GG--IVLLTTHQPLP 192 (209)
T ss_pred CCCCceeecCcccccCHHHHHHHHHHHHHHhcC-CC--EEEEecCCccC
Confidence 999999999999999999999999999988754 43 89999999853
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=261.42 Aligned_cols=213 Identities=27% Similarity=0.422 Sum_probs=172.5
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE---eccc-
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH---KKAL- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~---~~~~- 112 (449)
.+++.++|+.| +...-.+||||++.|||+++|+|.|||||||||+||++++.|+ +|+|.+.-. +.+.
T Consensus 6 LL~V~~lsk~Y------g~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~---~G~v~Y~~r~~~~~dl~ 76 (258)
T COG4107 6 LLSVSGLSKLY------GPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPD---AGTVTYRMRDGQPRDLY 76 (258)
T ss_pred ceeehhhhhhh------CCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCC---CCeEEEEcCCCCchhHh
Confidence 57899999873 5566889999999999999999999999999999999999885 899988643 2110
Q ss_pred ----------ccCcEEEEcCCCCC--CCCCC----HHHHHH-HHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccC
Q 044030 113 ----------AYGTSAYVTQDDTL--ITTLT----VKEAVY-YSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRI 174 (449)
Q Consensus 113 ----------~~~~i~yv~Q~~~l--~~~lT----v~e~l~-~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~ 174 (449)
.+...|+|.|++.- -...+ +.|-++ .+.+-+ ...++.+.+|++.+.++ ...|..+
T Consensus 77 ~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHY-------G~iR~~a~~WL~~VEI~~~RiDD~P 149 (258)
T COG4107 77 TMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHY-------GNIRAEAQDWLEEVEIDLDRIDDLP 149 (258)
T ss_pred hhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhh-------hhHHHHHHHHHHhcccCcccccCcc
Confidence 11246999999743 22222 223322 222211 23456688999999986 4568889
Q ss_pred CCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEee
Q 044030 175 RRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLS 254 (449)
Q Consensus 175 ~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~ 254 (449)
+.+||||+||+.|||-|+..|+++|+||||.|||...+..++++++.+..+.|. +++++|||. .-+--++|+.++|+
T Consensus 150 rtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~l--a~viVTHDl-~VarLla~rlmvmk 226 (258)
T COG4107 150 RTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGL--AVVIVTHDL-AVARLLADRLMVMK 226 (258)
T ss_pred cccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCc--eEEEEechh-HHHHHhhhcceeec
Confidence 999999999999999999999999999999999999999999999999988876 999999996 45666799999999
Q ss_pred CCeEEEecChhhHH
Q 044030 255 AGQTVYFGPATAAN 268 (449)
Q Consensus 255 ~G~iv~~g~~~~~~ 268 (449)
+|+++..|-.+.+.
T Consensus 227 ~g~vve~GLTDrvL 240 (258)
T COG4107 227 QGQVVESGLTDRVL 240 (258)
T ss_pred CCCEeccccccccc
Confidence 99999999877653
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=336.44 Aligned_cols=189 Identities=23% Similarity=0.389 Sum_probs=154.7
Q ss_pred cceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHH
Q 044030 56 SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEA 135 (449)
Q Consensus 56 ~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~ 135 (449)
+.+|+|+|++|++|++++|+|||||||||||++|+|..+|. +|+|.++| .++||+|++.+++. ||+||
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~---~G~i~~~g--------~iayv~Q~~~l~~~-Ti~eN 506 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPS---EGKIKHSG--------RISFSPQTSWIMPG-TIKDN 506 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECC--------EEEEEeCCCccCCc-cHHHH
Confidence 46999999999999999999999999999999999999874 89999998 38999999999886 99999
Q ss_pred HHHHHhccCCCCCCHHHHHH-----HHHHHHHHcCC--chhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Q 044030 136 VYYSAQLQLPDTMPKSDKKE-----RAEVTIREMGL--QDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208 (449)
Q Consensus 136 l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL--~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD 208 (449)
+.|+... .....++ ..++.++.+.. ......++..|||||||||+||||++.+|+++||||||+|||
T Consensus 507 I~~g~~~------~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD 580 (1490)
T TIGR01271 507 IIFGLSY------DEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLD 580 (1490)
T ss_pred HHhcccc------chHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 9987431 1111111 12223333321 223455678999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 209 SAASYYVMSR-IAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 209 ~~~~~~i~~~-l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
+.++..+++. +..+. + |+|+|++||++. .+ ..||++++|++|+++..|+.+++.
T Consensus 581 ~~~~~~i~~~~l~~~~-~---~~tvilvtH~~~-~~-~~ad~ii~l~~g~i~~~g~~~~l~ 635 (1490)
T TIGR01271 581 VVTEKEIFESCLCKLM-S---NKTRILVTSKLE-HL-KKADKILLLHEGVCYFYGTFSELQ 635 (1490)
T ss_pred HHHHHHHHHHHHHHHh-c---CCeEEEEeCChH-HH-HhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999984 66665 2 449999999974 44 569999999999999999988765
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-34 Score=311.76 Aligned_cols=218 Identities=19% Similarity=0.251 Sum_probs=155.6
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec----
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKK---- 110 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~---- 110 (449)
...|+++|++++| +++.+|+|+||+|++|+++||+|||||||||||++|+|....+.+.+|+|.+.++..
T Consensus 175 ~~~I~i~nls~~y------~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~ 248 (718)
T PLN03073 175 IKDIHMENFSISV------GGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDD 248 (718)
T ss_pred ceeEEEceEEEEe------CCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCC
Confidence 4569999999983 345699999999999999999999999999999999996411123467775433211
Q ss_pred -cc-------c-------cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCC---------------CCCHHHHHHHHHHH
Q 044030 111 -AL-------A-------YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPD---------------TMPKSDKKERAEVT 160 (449)
Q Consensus 111 -~~-------~-------~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~---------------~~~~~~~~~~v~~~ 160 (449)
.. . ...++|++|++.+... ++.++.........+. .......+.++.++
T Consensus 249 ~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~ 327 (718)
T PLN03073 249 TTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASI 327 (718)
T ss_pred CCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHH
Confidence 00 0 0113444443322111 1111100000000000 00011234567788
Q ss_pred HHHcCCc-hhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCC
Q 044030 161 IREMGLQ-DAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQP 239 (449)
Q Consensus 161 l~~lgL~-~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~ 239 (449)
++.+|+. +..++++.+|||||||||+||++|+.+|++|||||||++||+.+...+.+.|+++ +. |||++||+.
T Consensus 328 L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~----~~--tviivsHd~ 401 (718)
T PLN03073 328 LAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW----PK--TFIVVSHAR 401 (718)
T ss_pred HHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc----CC--EEEEEECCH
Confidence 8889996 5678999999999999999999999999999999999999999999999999876 33 999999995
Q ss_pred cHHHHhhcCeEEEeeCCeEE-EecChhh
Q 044030 240 SSEVFQLFHNLCLLSAGQTV-YFGPATA 266 (449)
Q Consensus 240 ~~~i~~~~D~v~~l~~G~iv-~~g~~~~ 266 (449)
..+..+||++++|++|+++ |.|+.+.
T Consensus 402 -~~l~~~~d~i~~l~~g~i~~~~g~~~~ 428 (718)
T PLN03073 402 -EFLNTVVTDILHLHGQKLVTYKGDYDT 428 (718)
T ss_pred -HHHHHhCCEEEEEECCEEEEeCCCHHH
Confidence 5788899999999999996 6776543
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=285.74 Aligned_cols=211 Identities=26% Similarity=0.371 Sum_probs=173.2
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.+.|.|+++.|- +.+++|+++||++++|+.+||+||+|+||||++++|...+.+. +|.|.+||+++..
T Consensus 262 ~v~F~~V~F~y~-----~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~---sG~I~id~qdir~vtq~ 333 (497)
T COG5265 262 AVAFINVSFAYD-----PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN---SGSITIDGQDIRDVTQQ 333 (497)
T ss_pred eEEEEEEEeecc-----ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCc---CceEEEcchhHHHhHHH
Confidence 478999999832 5678999999999999999999999999999999999999774 9999999987532
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHH-----HHHHHHHHcCCchhhCccC----CCCChHHH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKE-----RAEVTIREMGLQDAMNTRI----RRLSGGQK 182 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~~~~----~~LSgGer 182 (449)
.++.||.||||..||.+ |...|+.++.. ..+.++..+ .+...++. +.+..++.+ -.||||||
T Consensus 334 slR~aIg~VPQDtvLFND-ti~yni~ygr~-----~at~eev~aaa~~aqi~~fi~~--lP~gy~t~VgerglklSggek 405 (497)
T COG5265 334 SLRRAIGIVPQDTVLFND-TIAYNIKYGRP-----DATAEEVGAAAEAAQIHDFIQS--LPEGYDTGVGERGLKLSGGEK 405 (497)
T ss_pred HHHHHhCcCcccceehhh-hHHHHHhccCc-----cccHHHHHHHHHHhhhhHHHHh--CchhhhcccchheeeccCchH
Confidence 24679999999999987 99999988642 122222221 22222332 344555555 47999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 183 RRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 183 qRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
|||+|||+++++|++++|||.||+||..+.+.|...|+++++ |+|-+++.|.++ .+ --+|.|++|++|+|++.|
T Consensus 406 qrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~----~rttlviahrls-ti-~~adeiivl~~g~i~erg 479 (497)
T COG5265 406 QRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSA----GRTTLVIAHRLS-TI-IDADEIIVLDNGRIVERG 479 (497)
T ss_pred HHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhC----CCeEEEEeehhh-hc-cCCceEEEeeCCEEEecC
Confidence 999999999999999999999999999999999999999983 449999999975 34 458999999999999999
Q ss_pred ChhhHHH
Q 044030 263 PATAANE 269 (449)
Q Consensus 263 ~~~~~~~ 269 (449)
.-+++..
T Consensus 480 ~h~~ll~ 486 (497)
T COG5265 480 THEELLA 486 (497)
T ss_pred cHHHHHH
Confidence 9877653
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=330.04 Aligned_cols=191 Identities=24% Similarity=0.386 Sum_probs=157.0
Q ss_pred ccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHH
Q 044030 55 SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKE 134 (449)
Q Consensus 55 ~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e 134 (449)
++.+|+|+||+|++|++++|+|||||||||||++|+|.++|. +|+|.++ +.++|++|++.+++ .||+|
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~---~G~i~~~--------~~i~yv~Q~~~l~~-~Tv~e 739 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEIS---EGRVWAE--------RSIAYVPQQAWIMN-ATVRG 739 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEEC--------CeEEEEeCCCccCC-CcHHH
Confidence 456999999999999999999999999999999999999774 8999874 35999999998875 59999
Q ss_pred HHHHHHhccCCCCCCHHHHH-----HHHHHHHHHc--CCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 044030 135 AVYYSAQLQLPDTMPKSDKK-----ERAEVTIREM--GLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGL 207 (449)
Q Consensus 135 ~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgL 207 (449)
|+.|+... ..+... ..+++.++.+ |+....++++.+|||||||||+|||||+.+|+++||||||++|
T Consensus 740 nI~~~~~~------~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saL 813 (1560)
T PTZ00243 740 NILFFDEE------DAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSAL 813 (1560)
T ss_pred HHHcCChh------hHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccC
Confidence 99885321 111111 1234456666 7777778889999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 208 DSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 208 D~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
|+.++..+++.+.... ..| +|+|++||++. . ...||+|++|++|++++.|+.+++.
T Consensus 814 D~~~~~~i~~~~~~~~-~~~--~TvIlvTH~~~-~-~~~ad~ii~l~~G~i~~~G~~~~l~ 869 (1560)
T PTZ00243 814 DAHVGERVVEECFLGA-LAG--KTRVLATHQVH-V-VPRADYVVALGDGRVEFSGSSADFM 869 (1560)
T ss_pred CHHHHHHHHHHHHHHh-hCC--CEEEEEeCCHH-H-HHhCCEEEEEECCEEEEecCHHHHH
Confidence 9999999887543222 124 49999999973 3 4689999999999999999988764
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-33 Score=265.25 Aligned_cols=190 Identities=23% Similarity=0.307 Sum_probs=137.2
Q ss_pred cccceeeeeeEEEecCeEEEEECCCCCcHHHHH-HHHHcCCCCCCCceeEEEEC-----------C--Eecc---cccCc
Q 044030 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLL-DALAGRLGSDTRQTGKILIN-----------G--HKKA---LAYGT 116 (449)
Q Consensus 54 ~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL-~~l~G~~~~~~~~~G~I~~~-----------g--~~~~---~~~~~ 116 (449)
.+..+|+||||++++||++||+||||||||||+ ..|.. .|++.+. | .... .....
T Consensus 6 ~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~--------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (226)
T cd03270 6 AREHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA--------EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLS 77 (226)
T ss_pred chhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH--------HHHHHHhhcccchhhhhhcccCccccccccCCC
Confidence 345799999999999999999999999999995 44432 1221110 0 0000 01112
Q ss_pred EEEEcCCCC--CCCCCCHHH---HHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch-hhCccCCCCChHHHHHHHHHHH
Q 044030 117 SAYVTQDDT--LITTLTVKE---AVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD-AMNTRIRRLSGGQKRRVSISIE 190 (449)
Q Consensus 117 i~yv~Q~~~--l~~~lTv~e---~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LSgGerqRv~ia~a 190 (449)
.++..|++. +.+..+|.. ...+...+. ......++ .++++.+++.+ ..++++.+|||||||||+||+|
T Consensus 78 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~-~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~lara 151 (226)
T cd03270 78 PAIAIDQKTTSRNPRSTVGTVTEIYDYLRLLF-----ARVGIRER-LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQ 151 (226)
T ss_pred ceEEecCCCCCCCCCccHHHHHHHHHHHHHHh-----hhhhHHHH-HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHH
Confidence 344444432 244456542 222221111 11112233 46899999986 5899999999999999999999
Q ss_pred HHhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEe------eCCeEEEec
Q 044030 191 ILTRP--KLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLL------SAGQTVYFG 262 (449)
Q Consensus 191 L~~~P--~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l------~~G~iv~~g 262 (449)
|+.+| +++||||||+|||+.++..+.+.|+++++ .|. |||++||++. ++ .+||++++| ++|+++++|
T Consensus 152 l~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~-~g~--tii~itH~~~-~~-~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 152 IGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRD-LGN--TVLVVEHDED-TI-RAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred HHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHh-CCC--EEEEEEeCHH-HH-HhCCEEEEeCCCccccCCEEEecC
Confidence 99998 59999999999999999999999999974 455 9999999974 44 699999999 999999876
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=248.77 Aligned_cols=209 Identities=24% Similarity=0.335 Sum_probs=172.9
Q ss_pred eEEEEeeEEEEeecCccc-ccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE--ecc--
Q 044030 37 FLTWKDLTVTIVSNGKKG-SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH--KKA-- 111 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~--~~~-- 111 (449)
.|.++|+++++.-+...| .-++|+|+||+++.||++++-|||||||||||++|-|.+.|+ +|+|++.-. -++
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d---~G~I~v~H~g~~vdl~ 80 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPD---EGQILVRHEGEWVDLV 80 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCC---CceEEEEeCcchhhhh
Confidence 578899998853322222 247999999999999999999999999999999999999875 999998532 111
Q ss_pred ---------cccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccCCCCChHH
Q 044030 112 ---------LAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSGGQ 181 (449)
Q Consensus 112 ---------~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGe 181 (449)
.+++.+|||.|.-...|.....|-++-.+.-+ +.+.+..+.++..++.+|++. ...+-.+..+||||
T Consensus 81 ~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~---gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGE 157 (235)
T COG4778 81 TAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLAR---GVPREVARAKAADLLTRLNLPERLWSLAPATFSGGE 157 (235)
T ss_pred ccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCch
Confidence 12356899999988888888777776554332 567777888999999999996 46788899999999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeC
Q 044030 182 KRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSA 255 (449)
Q Consensus 182 rqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~ 255 (449)
+|||.|||.++.+-+||+|||||+.||..++..++++|++-+ ..|. .+|=+-|| .+--...+||++-+..
T Consensus 158 qQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~K-a~Ga--AlvGIFHD-eevre~vadR~~~~~~ 227 (235)
T COG4778 158 QQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAK-ARGA--ALVGIFHD-EEVREAVADRLLDVSA 227 (235)
T ss_pred heehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHH-hcCc--eEEEeecc-HHHHHHHhhheeeccc
Confidence 999999999999999999999999999999999999999976 4454 99999999 4445668999998864
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-32 Score=306.22 Aligned_cols=206 Identities=26% Similarity=0.416 Sum_probs=172.5
Q ss_pred CCCeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc
Q 044030 33 DDGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL 112 (449)
Q Consensus 33 ~~~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~ 112 (449)
.....++++|.+++ .. + .+..+.|+||||+|++|+.+||+||-|||||+||.+|.|..+. .+|+|.++|.
T Consensus 514 ~~~~~i~i~~~sfs-W~-~-~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~---~sG~v~v~gs---- 583 (1381)
T KOG0054|consen 514 AGENAIEIKNGSFS-WD-S-ESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPK---LSGSVAVNGS---- 583 (1381)
T ss_pred CCCceEEEeeeeEe-cC-C-CCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCccc---ccceEEEcCe----
Confidence 33456899999998 32 1 2345599999999999999999999999999999999999865 5999999985
Q ss_pred ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccC-----------CCCChHH
Q 044030 113 AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRI-----------RRLSGGQ 181 (449)
Q Consensus 113 ~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~-----------~~LSgGe 181 (449)
++||+|++.++.. ||+|||.|+..+ .+++.+++++...|++..+..+ -+|||||
T Consensus 584 ----iaYv~Q~pWI~ng-TvreNILFG~~~----------d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQ 648 (1381)
T KOG0054|consen 584 ----VAYVPQQPWIQNG-TVRENILFGSPY----------DEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQ 648 (1381)
T ss_pred ----EEEeccccHhhCC-cHHHhhhcCccc----------cHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhH
Confidence 8999999999887 999999998643 2345566666666654444333 5899999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEe
Q 044030 182 KRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYF 261 (449)
Q Consensus 182 rqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~ 261 (449)
|||+++|||+.++.++++||.|+|++|++...+|.+..-.-. -. ++|+|++||+. +..+.+|.|++|++|+|...
T Consensus 649 KqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~-L~--~KT~ILVTHql--~~L~~ad~Iivl~~G~I~~~ 723 (1381)
T KOG0054|consen 649 KQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGL-LR--GKTVILVTHQL--QFLPHADQIIVLKDGKIVES 723 (1381)
T ss_pred HHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhh-hc--CCEEEEEeCch--hhhhhCCEEEEecCCeEecc
Confidence 999999999999999999999999999999999887665332 22 45999999985 57889999999999999999
Q ss_pred cChhhHH
Q 044030 262 GPATAAN 268 (449)
Q Consensus 262 g~~~~~~ 268 (449)
|+.+++.
T Consensus 724 Gty~el~ 730 (1381)
T KOG0054|consen 724 GTYEELL 730 (1381)
T ss_pred cCHHHHH
Confidence 9999887
|
|
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-31 Score=260.79 Aligned_cols=195 Identities=25% Similarity=0.334 Sum_probs=152.7
Q ss_pred cceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHH-----cCCC-----CC--------CCceeEEEECCEeccccc---
Q 044030 56 SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALA-----GRLG-----SD--------TRQTGKILINGHKKALAY--- 114 (449)
Q Consensus 56 ~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~-----G~~~-----~~--------~~~~G~I~~~g~~~~~~~--- 114 (449)
..-|+|||.+|+.|.+++|.|+||||||||++.+. ..+. |. ....--|.++..++....
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 34799999999999999999999999999998662 1100 10 001113566665431100
Q ss_pred ------------------------C----cEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCC
Q 044030 115 ------------------------G----TSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGL 166 (449)
Q Consensus 115 ------------------------~----~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 166 (449)
+ .+.|..++...+..|||.|++.|...+. ...++.++++.+||
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~---------~~~~~~~~L~~vgL 158 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP---------KIARKLQTLCDVGL 158 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh---------hHHHHHHHHHHcCC
Confidence 0 1345566666678899999999876542 12356789999999
Q ss_pred ch-hhCccCCCCChHHHHHHHHHHHHHhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHH
Q 044030 167 QD-AMNTRIRRLSGGQKRRVSISIEILTR---PKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSE 242 (449)
Q Consensus 167 ~~-~~~~~~~~LSgGerqRv~ia~aL~~~---P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~ 242 (449)
.+ .+++++..|||||+||++||++|+.+ |++++|||||+|||+..+..+++.|+++++ .|. |||+++|++. .
T Consensus 159 ~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~-~g~--tvIiitH~~~-~ 234 (261)
T cd03271 159 GYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVD-KGN--TVVVIEHNLD-V 234 (261)
T ss_pred chhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCC--EEEEEeCCHH-H
Confidence 87 58999999999999999999999996 799999999999999999999999999984 455 9999999973 4
Q ss_pred HHhhcCeEEEe------eCCeEEEecCh
Q 044030 243 VFQLFHNLCLL------SAGQTVYFGPA 264 (449)
Q Consensus 243 i~~~~D~v~~l------~~G~iv~~g~~ 264 (449)
+ ..||+++.| ++|++++.|++
T Consensus 235 i-~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 235 I-KCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred H-HhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 4 679999999 89999999874
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.8e-31 Score=281.36 Aligned_cols=203 Identities=26% Similarity=0.397 Sum_probs=170.7
Q ss_pred CCeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc
Q 044030 34 DGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA 113 (449)
Q Consensus 34 ~~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~ 113 (449)
.+..++++|+++.| . +++.+++++||.|.+|+.+||+||||+|||||||+|+|...|. +|+|.+.-.
T Consensus 318 g~~vl~~~~~~~~y-~----~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~---~G~v~~g~~----- 384 (530)
T COG0488 318 GKLVLEFENVSKGY-D----GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL---SGTVKVGET----- 384 (530)
T ss_pred CCeeEEEecccccc-C----CCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccC---CceEEeCCc-----
Confidence 35679999999983 1 3378999999999999999999999999999999999988774 899987532
Q ss_pred cCcEEEEcCCC-CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccCCCCChHHHHHHHHHHHH
Q 044030 114 YGTSAYVTQDD-TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSGGQKRRVSISIEI 191 (449)
Q Consensus 114 ~~~i~yv~Q~~-~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGerqRv~ia~aL 191 (449)
-.+||..|+. .+.+..|+.|++.-... ...+..+...|..|++. +...++++.||||||.|+.+|+.+
T Consensus 385 -v~igyf~Q~~~~l~~~~t~~d~l~~~~~---------~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll 454 (530)
T COG0488 385 -VKIGYFDQHRDELDPDKTVLEELSEGFP---------DGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLL 454 (530)
T ss_pred -eEEEEEEehhhhcCccCcHHHHHHhhCc---------cccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHh
Confidence 2589999996 44578899999854321 11145688899999996 566899999999999999999999
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEe-cChhhH
Q 044030 192 LTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYF-GPATAA 267 (449)
Q Consensus 192 ~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~-g~~~~~ 267 (449)
+.+|.+|||||||+.||..+...+.+.|..+. | |||+|||| ...+..+|++++++.+ ++..+ |.-++.
T Consensus 455 ~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~-----G-tvl~VSHD-r~Fl~~va~~i~~~~~-~~~~~~g~y~~y 523 (530)
T COG0488 455 LQPPNLLLLDEPTNHLDIESLEALEEALLDFE-----G-TVLLVSHD-RYFLDRVATRIWLVED-KVEEFEGGYEDY 523 (530)
T ss_pred ccCCCEEEEcCCCccCCHHHHHHHHHHHHhCC-----C-eEEEEeCC-HHHHHhhcceEEEEcC-ceeEcCCCHHHH
Confidence 99999999999999999999999999999874 3 99999999 5789999999999998 55444 655443
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.6e-31 Score=301.79 Aligned_cols=239 Identities=21% Similarity=0.281 Sum_probs=184.5
Q ss_pred CcchhchhhhhhcccccccccccccCC--CCCeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHH
Q 044030 6 DSITETNEALEMESSNKTANSLINVNE--DDGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKT 83 (449)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKS 83 (449)
.++.+..+..+++++.....+....|. +..-.|+++|+++.| . ++...+|+||||+|+|||.+||+|..|||||
T Consensus 1105 ~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RY-r---p~lp~VLk~is~~I~p~eKVGIVGRTGaGKS 1180 (1381)
T KOG0054|consen 1105 VSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRY-R---PNLPLVLKGISFTIKPGEKVGIVGRTGAGKS 1180 (1381)
T ss_pred hhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEe-C---CCCcchhcCceEEEcCCceEEEeCCCCCCHH
Confidence 445566666665554212111111111 224579999999994 3 2456899999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCceeEEEECCEeccc-----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHH
Q 044030 84 TLLDALAGRLGSDTRQTGKILINGHKKAL-----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAE 158 (449)
Q Consensus 84 TLL~~l~G~~~~~~~~~G~I~~~g~~~~~-----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~ 158 (449)
||+++|-.+..| .+|+|.+||.++.. -+++++.+||||.+|.. |+|.||.=.. ..+++ .+-
T Consensus 1181 SL~~aLFRl~e~---~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsG-TvR~NLDPf~------e~sD~----~IW 1246 (1381)
T KOG0054|consen 1181 SLILALFRLVEP---AEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSG-TVRFNLDPFD------EYSDD----EIW 1246 (1381)
T ss_pred HHHHHHHHhcCc---cCCeEEEcCeecccccHHHHHhcCeeeCCCCceecC-ccccccCccc------ccCHH----HHH
Confidence 999999999876 48999999998642 24679999999999999 9999985321 12222 334
Q ss_pred HHHHHcCCchh-------hCccC----CCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcC
Q 044030 159 VTIREMGLQDA-------MNTRI----RRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDG 227 (449)
Q Consensus 159 ~~l~~lgL~~~-------~~~~~----~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g 227 (449)
+.|+..+|.+. +|..+ .++|-||||-+++||||+++++||+|||.|++.|+.+-..|-+.|++--+
T Consensus 1247 ~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~--- 1323 (1381)
T KOG0054|consen 1247 EALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFK--- 1323 (1381)
T ss_pred HHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhc---
Confidence 44444444332 33333 68999999999999999999999999999999999999999999998653
Q ss_pred CCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 228 IGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 228 ~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
+.|||.+.|... .+. -+|||+||++|+++++|+|.++.
T Consensus 1324 -dcTVltIAHRl~-TVm-d~DrVlVld~G~v~EfdsP~~Ll 1361 (1381)
T KOG0054|consen 1324 -DCTVLTIAHRLN-TVM-DSDRVLVLDAGRVVEFDSPAELL 1361 (1381)
T ss_pred -CCeEEEEeeccc-hhh-hcCeEEEeeCCeEeecCChHHHH
Confidence 449999999985 454 48999999999999999998876
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.7e-32 Score=239.76 Aligned_cols=128 Identities=45% Similarity=0.756 Sum_probs=114.9
Q ss_pred eeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----ccCcEEEEcCCCCCCCCCCHH
Q 044030 59 LEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-----AYGTSAYVTQDDTLITTLTVK 133 (449)
Q Consensus 59 L~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-----~~~~i~yv~Q~~~l~~~lTv~ 133 (449)
|+|||+++++|++++|+||||||||||+++|+|..++ .+|+|.++|.+... ..+.++|++|++.+++.+||+
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~---~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~ 77 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPP---DSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVR 77 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHE---SEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccc---cccccccccccccccccccccccccccccccccccccccc
Confidence 7999999999999999999999999999999999877 49999999998643 235799999999999999999
Q ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccC----CCCChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 044030 134 EAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRI----RRLSGGQKRRVSISIEILTRPKLLFLDEPTS 205 (449)
Q Consensus 134 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~----~~LSgGerqRv~ia~aL~~~P~llllDEPts 205 (449)
|+ ...++++++++.+++.+..++.+ ..|||||||||+||+||+.+|++++|||||+
T Consensus 78 ~~----------------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 78 EN----------------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HH----------------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cc----------------cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 99 12345888999999887777777 9999999999999999999999999999996
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-31 Score=248.27 Aligned_cols=165 Identities=21% Similarity=0.318 Sum_probs=132.5
Q ss_pred eeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCC------CCceeEEEECCEeccc--ccCcEEEEcCCCCCCCCCC
Q 044030 60 EDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSD------TRQTGKILINGHKKAL--AYGTSAYVTQDDTLITTLT 131 (449)
Q Consensus 60 ~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~------~~~~G~I~~~g~~~~~--~~~~i~yv~Q~~~l~~~lT 131 (449)
+++++++++| +++|+||||||||||+++|+|+.++. ....|++.++|.+... ..+.++||+|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 7789999999 99999999999999999999987542 1123567777765422 235799999998766
Q ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHH----hCCCEEEEeCCCCCC
Q 044030 132 VKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEIL----TRPKLLFLDEPTSGL 207 (449)
Q Consensus 132 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~----~~P~llllDEPtsgL 207 (449)
|.. . ..++++++++. .+..++++..||||||||++||++++ .+|++++|||||+||
T Consensus 89 ------~~~--~---------~~~~~~~~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~L 148 (197)
T cd03278 89 ------YSI--I---------SQGDVSEIIEA---PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAAL 148 (197)
T ss_pred ------eeE--E---------ehhhHHHHHhC---CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccC
Confidence 110 0 02346666666 55678899999999999999999997 466999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeC
Q 044030 208 DSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSA 255 (449)
Q Consensus 208 D~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~ 255 (449)
|+..+..+.+.|+++++ +. |||++||++. . ...||+++.+..
T Consensus 149 D~~~~~~l~~~l~~~~~--~~--tiIiitH~~~-~-~~~~d~v~~~~~ 190 (197)
T cd03278 149 DDANVERFARLLKEFSK--ET--QFIVITHRKG-T-MEAADRLYGVTM 190 (197)
T ss_pred CHHHHHHHHHHHHHhcc--CC--EEEEEECCHH-H-HhhcceEEEEEe
Confidence 99999999999999973 34 9999999973 4 578999999974
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-32 Score=241.44 Aligned_cols=206 Identities=27% Similarity=0.439 Sum_probs=177.2
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.+.++||.+. +-|-.+|+.+..||++-++|||||||||||-.++|+.+. +|+|.++|.+...
T Consensus 3 l~qln~v~~~----------tRL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~----sGsi~~~G~~l~~~~~~ 68 (248)
T COG4138 3 LMQLNDVAES----------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----SGSIQFAGQPLEAWSAT 68 (248)
T ss_pred eeeecccccc----------ccccccccccccceEEEEECCCCccHHHHHHHHhCCCCC----CceEEECCcchhHHhHh
Confidence 4677888765 247789999999999999999999999999999999754 8999999998632
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEI 191 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL 191 (449)
..++-+|+.|+..-...|.|+.++.+. .+.++....++++.+.++|++.+.+.+..|||||-|||-+|...
T Consensus 69 eLArhRAYLsQqq~p~f~mpV~~YL~L~--------qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~ 140 (248)
T COG4138 69 ELARHRAYLSQQQTPPFAMPVWHYLTLH--------QPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVV 140 (248)
T ss_pred HHHHHHHHHhhccCCcchhhhhhhhhhc--------CchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEE
Confidence 124568999998877788999998653 23456667789999999999999999999999999999999887
Q ss_pred Hh-----CC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecCh
Q 044030 192 LT-----RP--KLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264 (449)
Q Consensus 192 ~~-----~P--~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~ 264 (449)
+. || ++++||||.++||......+-..|.+++. .|. +|||++||.+ ...+.+|++.+|+.|++...|..
T Consensus 141 LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~-~G~--~vims~HDLN-hTLrhA~~~wLL~rG~l~~~G~~ 216 (248)
T COG4138 141 LQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQ-QGL--AIVMSSHDLN-HTLRHAHRAWLLKRGKLLASGRR 216 (248)
T ss_pred EEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHh-CCc--EEEEeccchh-hHHHHHHHHHHHhcCeEEeecch
Confidence 65 44 69999999999999999999999999995 444 9999999986 57889999999999999999998
Q ss_pred hhHH
Q 044030 265 TAAN 268 (449)
Q Consensus 265 ~~~~ 268 (449)
+++.
T Consensus 217 ~eVl 220 (248)
T COG4138 217 EEVL 220 (248)
T ss_pred hhhc
Confidence 8764
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-30 Score=264.40 Aligned_cols=214 Identities=25% Similarity=0.409 Sum_probs=181.6
Q ss_pred CCeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc
Q 044030 34 DGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA 113 (449)
Q Consensus 34 ~~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~ 113 (449)
....++++|++.. ..++||||++++||++||.|-=|||+|-|+++|.|..++ .+|+|.+||++....
T Consensus 260 ~~~~l~v~~l~~~----------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~---~~G~i~l~G~~v~~~ 326 (500)
T COG1129 260 GEPVLEVRNLSGG----------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPA---SSGEILLDGKPVRIR 326 (500)
T ss_pred CCcEEEEecCCCC----------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcC---CCceEEECCEEccCC
Confidence 4556888888764 158999999999999999999999999999999997655 489999999976432
Q ss_pred ------cCcEEEEcCC---CCCCCCCCHHHHHHHHHhccCC-C-CCCHHHHHHHHHHHHHHcCCc-hhhCccCCCCChHH
Q 044030 114 ------YGTSAYVTQD---DTLITTLTVKEAVYYSAQLQLP-D-TMPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSGGQ 181 (449)
Q Consensus 114 ------~~~i~yv~Q~---~~l~~~lTv~e~l~~~~~~~~~-~-~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGe 181 (449)
...++|||.| ..++..++|.+|+.++...+.. . -.+....++.++++.+.|++. ...+.++..||||.
T Consensus 327 sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGN 406 (500)
T COG1129 327 SPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGN 406 (500)
T ss_pred CHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchh
Confidence 2469999998 4689999999999888322211 1 244555667789999999996 45678999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEe
Q 044030 182 KRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYF 261 (449)
Q Consensus 182 rqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~ 261 (449)
+|||.||+.|..+|++|||||||.|.|.-++.+|.++|++++++ | ++||++|-+. +|+..+||||++|++|+++..
T Consensus 407 QQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~-G--~ail~iSSEl-pEll~~~DRIlVm~~Gri~~e 482 (500)
T COG1129 407 QQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAE-G--KAILMISSEL-PELLGLSDRILVMREGRIVGE 482 (500)
T ss_pred hhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHC-C--CEEEEEeCCh-HHHHhhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999965 4 4999999996 689999999999999999875
Q ss_pred cCh
Q 044030 262 GPA 264 (449)
Q Consensus 262 g~~ 264 (449)
-+.
T Consensus 483 ~~~ 485 (500)
T COG1129 483 LDR 485 (500)
T ss_pred ecc
Confidence 443
|
|
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-29 Score=243.82 Aligned_cols=185 Identities=17% Similarity=0.271 Sum_probs=134.4
Q ss_pred cccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcC----------------CCCCCCcee--------EEEECCEe
Q 044030 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGR----------------LGSDTRQTG--------KILINGHK 109 (449)
Q Consensus 54 ~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~----------------~~~~~~~~G--------~I~~~g~~ 109 (449)
++..++++++ |++++|+||||||||||+++|+++ +.++ +| +|.+++.+
T Consensus 13 ~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~---~~~~~~~~~v~i~~~~~~ 84 (243)
T cd03272 13 KDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEG---SGPSVMSAYVEIIFDNSD 84 (243)
T ss_pred ccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCC---CCCCCceEEEEEEEEcCC
Confidence 4567888887 789999999999999999999843 2222 33 55555531
Q ss_pred c----c---c-ccCcEEEEcCCCCCCC-CCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChH
Q 044030 110 K----A---L-AYGTSAYVTQDDTLIT-TLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGG 180 (449)
Q Consensus 110 ~----~---~-~~~~i~yv~Q~~~l~~-~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgG 180 (449)
. . . ..+.++|++|+..+++ ..|..|...+...+.......... ....++.+.+++.+..+.++..||||
T Consensus 85 ~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~--~~qg~i~~l~~l~~~~~~~~~~lS~G 162 (243)
T cd03272 85 NRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYI--VPQGKINSLTNMKQDEQQEMQQLSGG 162 (243)
T ss_pred CccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEE--EEcCchHHhhhccccccccccccCHH
Confidence 1 0 0 1245899999887776 467777666655432211100000 00112334455666678899999999
Q ss_pred HHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEee
Q 044030 181 QKRRVSISIEILT----RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLS 254 (449)
Q Consensus 181 erqRv~ia~aL~~----~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~ 254 (449)
||||++||++|+. +|+++++||||+|||+.++..+++.|+++++ +. +||+++|++ ++..+||++++|.
T Consensus 163 ~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~--~~--~ii~~~h~~--~~~~~~d~i~~l~ 234 (243)
T cd03272 163 QKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD--GA--QFITTTFRP--ELLEVADKFYGVK 234 (243)
T ss_pred HHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CC--EEEEEecCH--HHHhhCCEEEEEE
Confidence 9999999999974 5899999999999999999999999999863 44 888888884 5789999999986
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.8e-31 Score=247.93 Aligned_cols=178 Identities=16% Similarity=0.184 Sum_probs=137.3
Q ss_pred cccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecc-cccCcEEEEcCCCCCCCCCCH
Q 044030 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKA-LAYGTSAYVTQDDTLITTLTV 132 (449)
Q Consensus 54 ~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~-~~~~~i~yv~Q~~~l~~~lTv 132 (449)
+++.+++++++ ++++|+||||||||||+++|+-. +|.+.. ...+.++|++|+..+++.+|+
T Consensus 15 ~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~-------------~G~~~~~~~~~~i~~~~~~~~~~~~~~~ 76 (212)
T cd03274 15 AGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFV-------------FGFRASKMRQKKLSDLIHNSAGHPNLDS 76 (212)
T ss_pred CCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHH-------------hccCHHHhhhhhHHHHhcCCCCCCCCce
Confidence 56779999988 89999999999999999999732 222211 112458899999988999999
Q ss_pred HHHHHHHHhccCC-----CCCCHHHHHH--HHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh----CCCEEEEe
Q 044030 133 KEAVYYSAQLQLP-----DTMPKSDKKE--RAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT----RPKLLFLD 201 (449)
Q Consensus 133 ~e~l~~~~~~~~~-----~~~~~~~~~~--~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~----~P~llllD 201 (449)
.+.+.+....... .+...+.... ...++++.++|.+..++++..||+|||||++||+|++. +|+++++|
T Consensus 77 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililD 156 (212)
T cd03274 77 CSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMD 156 (212)
T ss_pred EEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEc
Confidence 8887665433100 0111111110 12556677888888899999999999999999999974 47999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeC
Q 044030 202 EPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSA 255 (449)
Q Consensus 202 EPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~ 255 (449)
|||+|||+.++..+.+.|+++++ +. |+|++||++ ++.++||++++|..
T Consensus 157 EPt~gLD~~~~~~l~~~l~~~~~--~~--~~iivs~~~--~~~~~~d~v~~~~~ 204 (212)
T cd03274 157 EIDAALDFRNVSIVANYIKERTK--NA--QFIVISLRN--NMFELADRLVGIYK 204 (212)
T ss_pred CCCcCCCHHHHHHHHHHHHHHcC--CC--EEEEEECcH--HHHHhCCEEEEEEe
Confidence 99999999999999999999863 23 889999984 68899999999974
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.7e-29 Score=241.48 Aligned_cols=177 Identities=19% Similarity=0.242 Sum_probs=138.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE-ec-c------cccCcEEEEcCCC---------CCCCCCC
Q 044030 69 GHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH-KK-A------LAYGTSAYVTQDD---------TLITTLT 131 (449)
Q Consensus 69 Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~-~~-~------~~~~~i~yv~Q~~---------~l~~~lT 131 (449)
..+++|+||||||||||+++|++++.+. ..|++.+.|. +. . .....+++++|++ .+.|.+|
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~--~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~lt 102 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGIT--NLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEIT 102 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhccc--ccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEE
Confidence 5599999999999999999999998653 2467777765 21 1 1123689999985 3456889
Q ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc--------------------hhhCccCCCCChHHHHHHHHHHHH
Q 044030 132 VKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ--------------------DAMNTRIRRLSGGQKRRVSISIEI 191 (449)
Q Consensus 132 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--------------------~~~~~~~~~LSgGerqRv~ia~aL 191 (449)
|.+++.+......... ......+++.++++.+|+. +..++++.+||||||||++||++|
T Consensus 103 V~r~I~~~~~~~~~in-~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al 181 (251)
T cd03273 103 VTRQIVLGGTNKYLIN-GHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLIL 181 (251)
T ss_pred EEEEEEcCCceEEEEC-CEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHH
Confidence 9988865432211000 1223346788899999986 556788999999999999999999
Q ss_pred H----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEee
Q 044030 192 L----TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLS 254 (449)
Q Consensus 192 ~----~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~ 254 (449)
+ .+|+++++||||+|||+..+..+.+.|++++ + |. |||++||++ ++.+.||+++-+.
T Consensus 182 ~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~-g~--~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 182 ALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-K-GS--QFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred HHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-C-CC--EEEEEECCH--HHHHhCCEEEEEE
Confidence 8 4789999999999999999999999999986 3 44 999999994 6788899998876
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-27 Score=274.59 Aligned_cols=137 Identities=20% Similarity=0.278 Sum_probs=113.5
Q ss_pred CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchh-hCccCCCCChHHHHHHHHHHHHH---hCCCEEEEe
Q 044030 126 LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDA-MNTRIRRLSGGQKRRVSISIEIL---TRPKLLFLD 201 (449)
Q Consensus 126 l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~~~~LSgGerqRv~ia~aL~---~~P~llllD 201 (449)
.+..+||.|+|.++..-........++..+++ ++++.+||.+. +++++.+|||||+||++||++|+ .+|+++|||
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILD 837 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLD 837 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEe
Confidence 46678999999887542111111233444556 58899999886 79999999999999999999998 699999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEee------CCeEEEecChhhHH
Q 044030 202 EPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLS------AGQTVYFGPATAAN 268 (449)
Q Consensus 202 EPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~------~G~iv~~g~~~~~~ 268 (449)
|||+|||+.++..+++.|++++++ |. |||+++|++ ..+ ..||++++|. +|++++.|+++++.
T Consensus 838 EPTsGLD~~~~~~Ll~lL~~L~~~-G~--TVIiIsHdl-~~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~ 905 (1809)
T PRK00635 838 EPTTGLHTHDIKALIYVLQSLTHQ-GH--TVVIIEHNM-HVV-KVADYVLELGPEGGNLGGYLLASCSPEELI 905 (1809)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhc-CC--EEEEEeCCH-HHH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHH
Confidence 999999999999999999999854 55 999999997 455 8999999996 78999999998764
|
|
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-27 Score=226.08 Aligned_cols=191 Identities=17% Similarity=0.149 Sum_probs=134.2
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEe-cCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE-e-c--c
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAK-PGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH-K-K--A 111 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~-~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~-~-~--~ 111 (449)
.|+++|+. .| + + . ++++|... +|++++|+|||||||||||++|++.+... ..+....+.. . . .
T Consensus 5 ~i~l~nf~-~y-~----~-~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~--~~~~~~~~~~~~~~~~~ 72 (213)
T cd03279 5 KLELKNFG-PF-R----E-E---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGK--TPRYGRQENLRSVFAPG 72 (213)
T ss_pred EEEEECCc-Cc-C----C-c---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecC--ccccccchhHHHHhcCC
Confidence 46677776 31 1 1 1 56666544 58999999999999999999999654211 1233332211 0 1 1
Q ss_pred cccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHH
Q 044030 112 LAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEI 191 (449)
Q Consensus 112 ~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL 191 (449)
.....+++++|+..... ++.... +.+..+..+.+ .+...++.+..++++..|||||+||++||+||
T Consensus 73 ~~~~~v~~~f~~~~~~~--~~~r~~----------gl~~~~~~~~~--~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al 138 (213)
T cd03279 73 EDTAEVSFTFQLGGKKY--RVERSR----------GLDYDQFTRIV--LLPQGEFDRFLARPVSTLSGGETFLASLSLAL 138 (213)
T ss_pred CccEEEEEEEEECCeEE--EEEEec----------CCCHHHHHHhh--hhhhcchHHHhcCCccccCHHHHHHHHHHHHH
Confidence 12245889998864311 111111 22222222111 24455577888999999999999999999999
Q ss_pred Hh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCe
Q 044030 192 LT----------RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQ 257 (449)
Q Consensus 192 ~~----------~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~ 257 (449)
+. +|++++|||||+|||+.++..+.+.|++++++ +. |||++||++ +.+...+|+++++++|.
T Consensus 139 ~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~-~~--tii~itH~~-~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 139 ALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTE-NR--MVGVISHVE-ELKERIPQRLEVIKTPG 210 (213)
T ss_pred HhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CC--EEEEEECch-HHHHhhCcEEEEEecCC
Confidence 85 57899999999999999999999999999744 55 999999997 57888999999999875
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.6e-27 Score=236.50 Aligned_cols=221 Identities=24% Similarity=0.425 Sum_probs=188.1
Q ss_pred CCeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec-c-
Q 044030 34 DGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKK-A- 111 (449)
Q Consensus 34 ~~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~-~- 111 (449)
....|+++||++. - ..+...+++|||++++||++||.|-.|-|-+.|+.+|+|+.++. +|+|.++|++. .
T Consensus 254 g~~vL~V~~L~v~-~----~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~---~G~I~l~G~~v~~~ 325 (501)
T COG3845 254 GEVVLEVEDLSVK-D----RRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPA---SGRILLNGKDVLGR 325 (501)
T ss_pred CCeEEEEeeeEee-c----CCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccC---CceEEECCEecccc
Confidence 4578999999987 2 13357899999999999999999999999999999999998663 69999999985 1
Q ss_pred --c---ccCcEEEEcCCC---CCCCCCCHHHHHHHHHhcc----CCCCCCHHHHHHHHHHHHHHcCCc-hhhCccCCCCC
Q 044030 112 --L---AYGTSAYVTQDD---TLITTLTVKEAVYYSAQLQ----LPDTMPKSDKKERAEVTIREMGLQ-DAMNTRIRRLS 178 (449)
Q Consensus 112 --~---~~~~i~yv~Q~~---~l~~~lTv~e~l~~~~~~~----~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LS 178 (449)
. ....++|||.|. .+.+.+|+.||+.+...-. ...-......++.+.++++.+++. .-.+.+++.||
T Consensus 326 ~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LS 405 (501)
T COG3845 326 LSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLS 405 (501)
T ss_pred CCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcC
Confidence 1 124689999985 5789999999998875421 111245566778889999999997 44577789999
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeE
Q 044030 179 GGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQT 258 (449)
Q Consensus 179 gGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~i 258 (449)
||++||+-+||+|..+|++|++.+||.|||..+...|.+.|.+.+++ | +.|+++|-+. +|++.+||+|.+|++|++
T Consensus 406 GGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~-G--~AVLLiS~dL-DEil~lsDrIaVi~~Gri 481 (501)
T COG3845 406 GGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDA-G--KAVLLISEDL-DEILELSDRIAVIYEGRI 481 (501)
T ss_pred CcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhc-C--CEEEEEehhH-HHHHHhhheeeeeeCCce
Confidence 99999999999999999999999999999999999999999999854 4 4999999996 689999999999999999
Q ss_pred EEecChhh
Q 044030 259 VYFGPATA 266 (449)
Q Consensus 259 v~~g~~~~ 266 (449)
+...++++
T Consensus 482 ~~~~~~~~ 489 (501)
T COG3845 482 VGIVPPEE 489 (501)
T ss_pred eccccccc
Confidence 98887764
|
|
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-27 Score=225.45 Aligned_cols=165 Identities=19% Similarity=0.235 Sum_probs=124.8
Q ss_pred eeeEEEecCeEEEEECCCCCcHHHHHHHHH----cCCCCCCCceeEEEECCEecc--cccCcEEEEcCCC-----CCCCC
Q 044030 61 DLTGYAKPGHLLAIMGPSGSGKTTLLDALA----GRLGSDTRQTGKILINGHKKA--LAYGTSAYVTQDD-----TLITT 129 (449)
Q Consensus 61 ~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~----G~~~~~~~~~G~I~~~g~~~~--~~~~~i~yv~Q~~-----~l~~~ 129 (449)
..++++.+| +++|+|||||||||||++|. |...+. +|.+..+..... .....+++++|++ .....
T Consensus 15 ~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~---~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~ 90 (204)
T cd03240 15 RSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPN---SKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRS 90 (204)
T ss_pred ceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcc---cccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEE
Confidence 345667788 99999999999999999995 876553 455541111111 1234689999987 33455
Q ss_pred CCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHH------HHHHHHHHhCCCEEEEeCC
Q 044030 130 LTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRR------VSISIEILTRPKLLFLDEP 203 (449)
Q Consensus 130 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR------v~ia~aL~~~P~llllDEP 203 (449)
+|+.|++.+.. .. .+++.+ +++++.||+||+|| ++||++++.+|+++++|||
T Consensus 91 ~~~~~~~~~~~---------~~----~~~~~~---------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP 148 (204)
T cd03240 91 LAILENVIFCH---------QG----ESNWPL---------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEP 148 (204)
T ss_pred hhHhhceeeec---------hH----HHHHHH---------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCC
Confidence 68888875421 11 122222 77889999999996 7899999999999999999
Q ss_pred CCCCCHHHHH-HHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeC
Q 044030 204 TSGLDSAASY-YVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSA 255 (449)
Q Consensus 204 tsgLD~~~~~-~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~ 255 (449)
|++||+..+. .+.+.|++++++.|. |||++||++. ....||+++.|.+
T Consensus 149 ~~~LD~~~~~~~l~~~l~~~~~~~~~--~iiiitH~~~--~~~~~d~i~~l~~ 197 (204)
T cd03240 149 TTNLDEENIEESLAEIIEERKSQKNF--QLIVITHDEE--LVDAADHIYRVEK 197 (204)
T ss_pred ccccCHHHHHHHHHHHHHHHHhccCC--EEEEEEecHH--HHhhCCEEEEEee
Confidence 9999999999 999999999754455 9999999963 4568999999964
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-27 Score=249.19 Aligned_cols=192 Identities=28% Similarity=0.401 Sum_probs=158.5
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccccc
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAY 114 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~ 114 (449)
...++++|+++. .+ +++..|++.++.+++||.+.|.||||||||||+|+|+|+.+.+ +|+|.+-. .
T Consensus 390 ~~~i~~~nl~l~-~p----~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g---~G~I~~P~------~ 455 (604)
T COG4178 390 DHGITLENLSLR-TP----DGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWG---SGRISMPA------D 455 (604)
T ss_pred cceeEEeeeeEE-CC----CCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccC---CCceecCC------C
Confidence 467999999997 22 4458999999999999999999999999999999999998764 78876541 2
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccC------CCCChHHHHHHHHH
Q 044030 115 GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRI------RRLSGGQKRRVSIS 188 (449)
Q Consensus 115 ~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~------~~LSgGerqRv~ia 188 (449)
..+-|+||.+.+... |.+|-+.+..... .-.++.+.++|.++||.+..++.= +.||+|||||+++|
T Consensus 456 ~~~lflpQ~PY~p~G-tLre~l~YP~~~~-------~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafA 527 (604)
T COG4178 456 SALLFLPQRPYLPQG-TLREALCYPNAAP-------DFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFA 527 (604)
T ss_pred CceEEecCCCCCCCc-cHHHHHhCCCCCC-------CCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHH
Confidence 347899999999888 9999997753221 123456788999999987655433 68999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEee
Q 044030 189 IEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLS 254 (449)
Q Consensus 189 ~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~ 254 (449)
|.|+++|++++|||.||+||+.+...+++.+++-.. +.|||.+.|.+ .+..+.++.+-+.
T Consensus 528 RilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp----~~tvISV~Hr~--tl~~~h~~~l~l~ 587 (604)
T COG4178 528 RLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELP----DATVISVGHRP--TLWNFHSRQLELL 587 (604)
T ss_pred HHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCC----CCEEEEeccch--hhHHHHhhheeec
Confidence 999999999999999999999999999999998542 45999999996 4677777766554
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-26 Score=258.34 Aligned_cols=126 Identities=26% Similarity=0.380 Sum_probs=108.2
Q ss_pred CCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch-hhCccCCCCChHHHHHHHHHHHHHhCC---CEEEEeCCC
Q 044030 129 TLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD-AMNTRIRRLSGGQKRRVSISIEILTRP---KLLFLDEPT 204 (449)
Q Consensus 129 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LSgGerqRv~ia~aL~~~P---~llllDEPt 204 (449)
.|||.|++.|...+. . .....+.++.+||.. .+++++..||||||||+.||++|+.+| +++||||||
T Consensus 791 ~ltv~E~l~~f~~~~------~---i~~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPt 861 (943)
T PRK00349 791 DMTVEEALEFFEAIP------K---IARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPT 861 (943)
T ss_pred cCcHHHHHHHHHhch------h---hhHHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCC
Confidence 378999998875432 1 123467899999986 579999999999999999999999999 999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEe------eCCeEEEecChhhHH
Q 044030 205 SGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLL------SAGQTVYFGPATAAN 268 (449)
Q Consensus 205 sgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l------~~G~iv~~g~~~~~~ 268 (449)
+|||+..+..+++.|+++.+ .|. |||+++|++. .+ ..+|+++.| ++|++++.|+++++.
T Consensus 862 sGLD~~~~~~L~~~L~~l~~-~G~--TVIiitH~~~-~i-~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~ 926 (943)
T PRK00349 862 TGLHFEDIRKLLEVLHRLVD-KGN--TVVVIEHNLD-VI-KTADWIIDLGPEGGDGGGEIVATGTPEEVA 926 (943)
T ss_pred CCCCHHHHHHHHHHHHHHHh-CCC--EEEEEecCHH-HH-HhCCEEEEecCCcCCCCCEEEEeCCHHHHH
Confidence 99999999999999999974 454 9999999973 44 689999999 799999999998764
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-25 Score=248.98 Aligned_cols=125 Identities=24% Similarity=0.351 Sum_probs=105.1
Q ss_pred CCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch-hhCccCCCCChHHHHHHHHHHHHHh---CCCEEEEeCCC
Q 044030 129 TLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD-AMNTRIRRLSGGQKRRVSISIEILT---RPKLLFLDEPT 204 (449)
Q Consensus 129 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LSgGerqRv~ia~aL~~---~P~llllDEPt 204 (449)
.|||.|.+.|...+. . ..+..++++.+||.. ..++++..|||||+||+.||++|+. +|++++|||||
T Consensus 789 ~~tv~e~~~f~~~~~---~------i~~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPt 859 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP---S------ISRKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPT 859 (924)
T ss_pred CCcHHHHHHHHHhcc---c------hhHHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCC
Confidence 467778877765432 0 113457889999986 5799999999999999999999997 59999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEe------eCCeEEEecChhhH
Q 044030 205 SGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLL------SAGQTVYFGPATAA 267 (449)
Q Consensus 205 sgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l------~~G~iv~~g~~~~~ 267 (449)
+|||+..+..+++.|+++.+ .|. |||+++|++. .+ ..||++++| ++|++++.|+++++
T Consensus 860 sgLD~~~~~~L~~~L~~l~~-~G~--TVIvi~H~~~-~i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 860 TGLHFDDIKKLLEVLQRLVD-QGN--TVVVIEHNLD-VI-KTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred CCCCHHHHHHHHHHHHHHHh-CCC--EEEEEeCCHH-HH-HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 99999999999999999984 454 9999999973 44 679999999 79999999998754
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-26 Score=234.62 Aligned_cols=213 Identities=23% Similarity=0.343 Sum_probs=150.2
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc-c
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA-Y 114 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~-~ 114 (449)
..+.+.|+++++ .++.+++|++|++.+|+-+||+|||||||||+|++|+|...|.....+ ++......... .
T Consensus 74 ~dvk~~sls~s~------~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d-~y~ls~e~~ps~~ 146 (614)
T KOG0927|consen 74 RDVKIESLSLSF------HGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHID-FYLLSREIEPSEK 146 (614)
T ss_pred ccceeeeeeecc------CCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccc-hhhhcccCCCchH
Confidence 357899999982 457899999999999999999999999999999999999877422222 32222221100 0
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHHh-cc----------------CCCCCCHHHHHHHHHHHHHHcCC-chhhCccCCC
Q 044030 115 GTSAYVTQDDTLITTLTVKEAVYYSAQ-LQ----------------LPDTMPKSDKKERAEVTIREMGL-QDAMNTRIRR 176 (449)
Q Consensus 115 ~~i~yv~Q~~~l~~~lTv~e~l~~~~~-~~----------------~~~~~~~~~~~~~v~~~l~~lgL-~~~~~~~~~~ 176 (449)
+.+-++.+ +.-..+.-+...+. +. ....+..+..+.++..+|..+|. .+..++.+.+
T Consensus 147 ~av~~v~~-----~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~ 221 (614)
T KOG0927|consen 147 QAVQAVVM-----ETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKD 221 (614)
T ss_pred HHHHHHhh-----hhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhc
Confidence 00101110 00000000100000 00 00012223344566677777775 5788999999
Q ss_pred CChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCC
Q 044030 177 LSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAG 256 (449)
Q Consensus 177 LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G 256 (449)
||||+|+|+++||+|..+|.+|+|||||++||..+..-+-+.|.+..+ + ++++++|. .+.+-..|.+|+-|.++
T Consensus 222 ~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~----~-~lVi~sh~-QDfln~vCT~Ii~l~~k 295 (614)
T KOG0927|consen 222 LSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR----I-ILVIVSHS-QDFLNGVCTNIIHLDNK 295 (614)
T ss_pred cCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC----c-eEEEEecc-hhhhhhHhhhhheeccc
Confidence 999999999999999999999999999999999999999999887642 2 79999999 56888999999999999
Q ss_pred e-EEEecChhh
Q 044030 257 Q-TVYFGPATA 266 (449)
Q Consensus 257 ~-iv~~g~~~~ 266 (449)
+ +.|.|+-++
T Consensus 296 kl~~y~Gnydq 306 (614)
T KOG0927|consen 296 KLIYYEGNYDQ 306 (614)
T ss_pred ceeeecCCHHH
Confidence 9 556676654
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.3e-27 Score=229.84 Aligned_cols=200 Identities=25% Similarity=0.319 Sum_probs=160.1
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc--
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA-- 113 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~-- 113 (449)
-.|+++|+.|.|. ...-=+..||++|++||++-|+|.||||||||++.|+|++.|+ +|+|++||++++..
T Consensus 321 ~~lelrnvrfay~-----~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~Pq---sG~I~ldg~pV~~e~l 392 (546)
T COG4615 321 KTLELRNVRFAYQ-----DNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQ---SGEILLDGKPVSAEQL 392 (546)
T ss_pred cceeeeeeeeccC-----cccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCC---CCceeECCccCCCCCH
Confidence 3689999999842 1224578999999999999999999999999999999999885 99999999986421
Q ss_pred --c-CcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhh---CccC--CCCChHHHHHH
Q 044030 114 --Y-GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAM---NTRI--RRLSGGQKRRV 185 (449)
Q Consensus 114 --~-~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~---~~~~--~~LSgGerqRv 185 (449)
+ +-++-|+-|..+|+.+-. +++ ....+.++.+++++.+.+.. |... -.||.|||||+
T Consensus 393 edYR~LfSavFsDyhLF~~ll~------------~e~---~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRl 457 (546)
T COG4615 393 EDYRKLFSAVFSDYHLFDQLLG------------PEG---KASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRL 457 (546)
T ss_pred HHHHHHHHHHhhhHhhhHhhhC------------Ccc---CCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHH
Confidence 2 234556666666664211 111 12235678888888886543 3332 57999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 186 SISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 186 ~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
++..|++-+-+|+++||=.+.-||.-++.+.+.+--+-++.|+ ||+.+|||- .-+..+||++.+.+|+++.--
T Consensus 458 All~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGK--TI~aIsHDd--~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 458 ALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGK--TIFAISHDD--HYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred HHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCC--eEEEEecCc--hhhhhHHHHHHHhcCceeecc
Confidence 9999999999999999999999999999999888776667766 999999993 478899999999999998764
|
|
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-25 Score=209.22 Aligned_cols=169 Identities=18% Similarity=0.200 Sum_probs=125.5
Q ss_pred eeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE--CCEec------ccccCcEEEEcCCCCCCCC
Q 044030 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILI--NGHKK------ALAYGTSAYVTQDDTLITT 129 (449)
Q Consensus 58 iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~--~g~~~------~~~~~~i~yv~Q~~~l~~~ 129 (449)
-++++++.+.+| +.+|+|||||||||||.+|...+.. +... -|... ......+.+++|+..++++
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~------~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~ 83 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGG------KASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDAN 83 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcC------CcccccccccHHHHhhCCCCeEEEEEEEEcCCccCC
Confidence 347788888887 8899999999999999999854322 1111 12110 0112347788887665541
Q ss_pred CCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHH----HhCCCEEEEeCCCC
Q 044030 130 LTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEI----LTRPKLLFLDEPTS 205 (449)
Q Consensus 130 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL----~~~P~llllDEPts 205 (449)
. . .....+.++++++. .+..+++++.||+|||||++||+|+ +.+|++++|||||+
T Consensus 84 -----------~------~-~~~~~~~~~~~l~~---~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~ 142 (198)
T cd03276 84 -----------P------L-CVLSQDMARSFLTS---NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDV 142 (198)
T ss_pred -----------c------C-CHHHHHHHHHHhcc---ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCccc
Confidence 0 0 11123456677776 6778999999999999999999999 58999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhc-CCCeEEEEEecCCcHHHHhhcCeEEEeeCCe
Q 044030 206 GLDSAASYYVMSRIAKLGQRD-GIGRTIIASIHQPSSEVFQLFHNLCLLSAGQ 257 (449)
Q Consensus 206 gLD~~~~~~i~~~l~~l~~~~-g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~ 257 (449)
|||+..+..+.+.|++++++. + +.|||+++|++. ++.. +|+|.+|..|+
T Consensus 143 glD~~~~~~~~~~l~~~~~~~~~-~~~iii~th~~~-~i~~-~d~v~~~~~~~ 192 (198)
T cd03276 143 FMDMVNRKISTDLLVKEAKKQPG-RQFIFITPQDIS-GLAS-SDDVKVFRMKD 192 (198)
T ss_pred ccCHHHHHHHHHHHHHHHhcCCC-cEEEEEECCccc-cccc-ccceeEEEecC
Confidence 999999999999999986441 2 348999999974 5665 49999998764
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.3e-26 Score=208.05 Aligned_cols=226 Identities=20% Similarity=0.280 Sum_probs=174.0
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCC-CceeEEEECCEec-c----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDT-RQTGKILINGHKK-A---- 111 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~-~~~G~I~~~g~~~-~---- 111 (449)
+.++|++..+ .. ..|...++++||+++.+||+-+++|.||||||-..|+|+|..+..- .+.-...+++.+. .
T Consensus 4 LDIrnL~IE~-~T-sqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr 81 (330)
T COG4170 4 LDIRNLTIEF-KT-SQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred ccccceEEEE-ec-CCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChH
Confidence 5688888873 22 2366789999999999999999999999999999999999875420 1123345555442 1
Q ss_pred cc----cCcEEEEcCCCC--CCCCCCHHHHHHHHHhccCCCCCC---HHHHHHHHHHHHHHcCCch---hhCccCCCCCh
Q 044030 112 LA----YGTSAYVTQDDT--LITTLTVKEAVYYSAQLQLPDTMP---KSDKKERAEVTIREMGLQD---AMNTRIRRLSG 179 (449)
Q Consensus 112 ~~----~~~i~yv~Q~~~--l~~~lTv~e~l~~~~~~~~~~~~~---~~~~~~~v~~~l~~lgL~~---~~~~~~~~LSg 179 (449)
.+ .+.++++||++. +-|.-+|...+.-.......++.. -..+++++.++|..+|+.+ ....++.+|.-
T Consensus 82 ~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTe 161 (330)
T COG4170 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTE 161 (330)
T ss_pred HhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhcc
Confidence 11 245789999975 445545544442221111001110 1234567889999999964 56778899999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEE
Q 044030 180 GQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTV 259 (449)
Q Consensus 180 GerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv 259 (449)
||-|+|.||.|++..|++|+.||||+.+|+.++.+|.++|.++.+..|. ||++++||. ..+-+.||++-||.=|+-+
T Consensus 162 GE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~T--tILL~s~Dl-~~is~W~d~i~VlYCGQ~~ 238 (330)
T COG4170 162 GECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNT--TILLISHDL-QMISQWADKINVLYCGQTV 238 (330)
T ss_pred CcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCc--eEEEEcccH-HHHHHHhhheEEEEecccc
Confidence 9999999999999999999999999999999999999999999876655 999999996 5799999999999999999
Q ss_pred EecChhhHH
Q 044030 260 YFGPATAAN 268 (449)
Q Consensus 260 ~~g~~~~~~ 268 (449)
..++.+++.
T Consensus 239 ESa~~e~l~ 247 (330)
T COG4170 239 ESAPSEELV 247 (330)
T ss_pred cccchhHHh
Confidence 999988775
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.2e-26 Score=233.00 Aligned_cols=201 Identities=24% Similarity=0.335 Sum_probs=160.2
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccccc
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAY 114 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~ 114 (449)
+-.+.++|+++.| . ++-.++++++|-+..++.++++||||||||||||+++|.+.| ..|.|.-.-+.
T Consensus 387 ~pvi~~~nv~F~y-~----~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p---~~G~vs~~~H~----- 453 (614)
T KOG0927|consen 387 PPVIMVQNVSFGY-S----DNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQP---TIGMVSRHSHN----- 453 (614)
T ss_pred CCeEEEeccccCC-C----CcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccc---ccccccccccc-----
Confidence 4468899999983 2 233799999999999999999999999999999999999977 47888654332
Q ss_pred CcEEEEcCC--CCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccCCCCChHHHHHHHHHHHH
Q 044030 115 GTSAYVTQD--DTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSGGQKRRVSISIEI 191 (449)
Q Consensus 115 ~~i~yv~Q~--~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGerqRv~ia~aL 191 (449)
.+++.-|. +.+.-+.++.|++.=.. +.....+.+..++..+||+ +..+.+++.||+|||+||.+|+.+
T Consensus 454 -~~~~y~Qh~~e~ldl~~s~le~~~~~~--------~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~ 524 (614)
T KOG0927|consen 454 -KLPRYNQHLAEQLDLDKSSLEFMMPKF--------PDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLA 524 (614)
T ss_pred -cchhhhhhhHhhcCcchhHHHHHHHhc--------cccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHH
Confidence 23444454 34444567777764221 1123445688899999998 667888899999999999999999
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeE-EEecCh
Q 044030 192 LTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQT-VYFGPA 264 (449)
Q Consensus 192 ~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~i-v~~g~~ 264 (449)
+..|.+|+|||||+|||..+...+.+.|.++- | +||++|||. -.+.++++++.+..+|.+ .+.|..
T Consensus 525 ~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~-----G-gvv~vSHDf-rlI~qVaeEi~~c~~~~~~~~~G~i 591 (614)
T KOG0927|consen 525 VKQPHLLLLDEPTNHLDIETIDALAEAINEFP-----G-GVVLVSHDF-RLISQVAEEIWVCENGTVTKWDGDI 591 (614)
T ss_pred hcCCcEEEecCCCcCCCchhHHHHHHHHhccC-----C-ceeeeechh-hHHHHHHHHhHhhccCceeecCccH
Confidence 99999999999999999999999999998763 2 899999996 478999999999988766 444543
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.7e-25 Score=218.99 Aligned_cols=191 Identities=25% Similarity=0.329 Sum_probs=154.1
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccccc
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAY 114 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~ 114 (449)
...++|.+++++| ++ --|.-=.++|..||+++++||||-||||+.++|+|.++|+ +|. ..+
T Consensus 340 ~~lv~y~~~~k~~------g~-F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPd---eg~----~~~----- 400 (591)
T COG1245 340 DTLVEYPDLKKTY------GD-FKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPD---EGS----EED----- 400 (591)
T ss_pred ceeeecchheeec------Cc-eEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCC---CCC----Ccc-----
Confidence 3456777887772 22 2466667788899999999999999999999999999885 675 111
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhC
Q 044030 115 GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTR 194 (449)
Q Consensus 115 ~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~ 194 (449)
-.++|=||.-.--.+.||.+.+.-....... .. -...++++-|+|++..++++.+|||||.|||+||.+|..+
T Consensus 401 ~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~----~s---~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~re 473 (591)
T COG1245 401 LKVSYKPQYISPDYDGTVEDLLRSAIRSAFG----SS---YFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSRE 473 (591)
T ss_pred ceEeecceeecCCCCCcHHHHHHHhhhhhcc----cc---hhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccc
Confidence 2478888876555667999988655432111 11 1235678889999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEee
Q 044030 195 PKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLS 254 (449)
Q Consensus 195 P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~ 254 (449)
+++++||||++-||...+..+.+.|+++....++ |.+++-||.. .+.-++|++++..
T Consensus 474 ADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~k--ta~vVdHDi~-~~dyvsDr~ivF~ 530 (591)
T COG1245 474 ADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEK--TALVVDHDIY-MIDYVSDRLIVFE 530 (591)
T ss_pred cCEEEecCchhhccHHHHHHHHHHHHHHHhhcCc--eEEEEeccee-hhhhhhceEEEEe
Confidence 9999999999999999999999999999976655 9999999974 5666789998875
|
|
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.6e-25 Score=212.58 Aligned_cols=172 Identities=20% Similarity=0.251 Sum_probs=116.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe-------c-cc--ccC--cEEEEcCCCCC-CCCCCHHHHH
Q 044030 70 HLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHK-------K-AL--AYG--TSAYVTQDDTL-ITTLTVKEAV 136 (449)
Q Consensus 70 e~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~-------~-~~--~~~--~i~yv~Q~~~l-~~~lTv~e~l 136 (449)
.+++|+|||||||||||++|++.+.+. .|++..++.. . .. ... .+.|..|++.. .-..++.+..
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~---~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~ 99 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEK---SSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGS 99 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCC---cccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCc
Confidence 399999999999999999999987542 4655543321 0 00 011 23344443221 1011111110
Q ss_pred HHHHhccCCCCCCHHHHHHHHHHHHHHcCCch----------------------hhCccCCCCChHHHHHHHHHHHHHhC
Q 044030 137 YYSAQLQLPDTMPKSDKKERAEVTIREMGLQD----------------------AMNTRIRRLSGGQKRRVSISIEILTR 194 (449)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----------------------~~~~~~~~LSgGerqRv~ia~aL~~~ 194 (449)
. ..+.. + .....+.++++++.+|+.. ..++++..||||||||++||++++.+
T Consensus 100 ~---~~~in-g--k~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~ 173 (247)
T cd03275 100 S---SYRIN-G--KVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIH 173 (247)
T ss_pred e---EEEEC-C--EEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHh
Confidence 0 00100 1 1112344668888888842 12344589999999999999999875
Q ss_pred ----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeC
Q 044030 195 ----PKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSA 255 (449)
Q Consensus 195 ----P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~ 255 (449)
|+++||||||+|||+..+..+.+.|++++++ |. +||++||++ ++...||++++|..
T Consensus 174 ~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~-g~--~vi~isH~~--~~~~~~d~i~~~~~ 233 (247)
T cd03275 174 SYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGP-NF--QFIVISLKE--EFFSKADALVGVYR 233 (247)
T ss_pred ccCCCCEEEEecccccCCHHHHHHHHHHHHHhccC-Cc--EEEEEECCH--HHHhhCCeEEEEEe
Confidence 8999999999999999999999999999744 54 999999994 56789999999863
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-24 Score=218.91 Aligned_cols=200 Identities=20% Similarity=0.273 Sum_probs=145.7
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccccc
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAY 114 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~ 114 (449)
...|...|++.. + |++.+|.+-++++..|.-+||+|+||+|||||||+|+. |.|.....+...
T Consensus 78 ~~Di~~~~fdLa-~-----G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~---------~~v~~f~veqE~-- 140 (582)
T KOG0062|consen 78 SKDIHIDNFDLA-Y-----GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN---------GQVSGFHVEQEV-- 140 (582)
T ss_pred ccceeeeeeeee-e-----cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh---------cCcCccCchhhe--
Confidence 445777788877 2 67899999999999999999999999999999999985 333322221111
Q ss_pred CcEEEEcCC-CCCCCCCCHHHHHHHHHhccCCCCCCHH-HHHHHHHHHHHHcCCc-hhhCccCCCCChHHHHHHHHHHHH
Q 044030 115 GTSAYVTQD-DTLITTLTVKEAVYYSAQLQLPDTMPKS-DKKERAEVTIREMGLQ-DAMNTRIRRLSGGQKRRVSISIEI 191 (449)
Q Consensus 115 ~~i~yv~Q~-~~l~~~lTv~e~l~~~~~~~~~~~~~~~-~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGerqRv~ia~aL 191 (449)
+-.|++-. ..+..++++.+.+.--..+ ... ...+..+.+|..+|.+ +...+++++||||-|.|+++||||
T Consensus 141 -~g~~t~~~~~~l~~D~~~~dfl~~e~~l------~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAl 213 (582)
T KOG0062|consen 141 -RGDDTEALQSVLESDTERLDFLAEEKEL------LAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARAL 213 (582)
T ss_pred -eccchHHHhhhhhccHHHHHHHHhhhhh------hccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHH
Confidence 01122222 1223333333333221111 111 2233344488999997 466788899999999999999999
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeE-EEecChh
Q 044030 192 LTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQT-VYFGPAT 265 (449)
Q Consensus 192 ~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~i-v~~g~~~ 265 (449)
..+|+||||||||+.||..+..-+.+.|+.+. . |+|++||| +..+-..|..|+-+++-++ .|.|.-+
T Consensus 214 f~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~----~--T~liVSHD-r~FLn~V~tdIIH~~~~kL~~YkGN~~ 281 (582)
T KOG0062|consen 214 FAKPDLLLLDEPTNHLDVVAVAWLENYLQTWK----I--TSLIVSHD-RNFLNTVCTDIIHLENLKLDYYKGNYS 281 (582)
T ss_pred hcCCCEEeecCCcccchhHHHHHHHHHHhhCC----c--eEEEEecc-HHHHHHHHHHHHHHhhhhhhhhcCcHH
Confidence 99999999999999999999999999998764 3 99999999 6788889999999887766 4556544
|
|
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.3e-23 Score=210.35 Aligned_cols=199 Identities=21% Similarity=0.311 Sum_probs=156.9
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccC
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYG 115 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~ 115 (449)
..+++++|++. .++ .+..+++|+||.|+.|+-+.|.||||||||+||++|+|+.+. .+|++..-.... .+
T Consensus 432 n~i~~e~v~l~-tPt---~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~---~~G~l~k~~~~~---~~ 501 (659)
T KOG0060|consen 432 NAIEFEEVSLS-TPT---NGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPS---TGGKLTKPTDGG---PK 501 (659)
T ss_pred ceEEeeeeeec-CCC---CCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhccccc---CCCeEEecccCC---CC
Confidence 57999999987 221 256789999999999999999999999999999999999865 389887654321 14
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccC-----------CCCChHHHHH
Q 044030 116 TSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRI-----------RRLSGGQKRR 184 (449)
Q Consensus 116 ~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~-----------~~LSgGerqR 184 (449)
.+-|+||.|.+.-. |.||.+.|...--.+ ..+....+++.+.|+.++|.+...+-. ..||+||+||
T Consensus 502 ~lfflPQrPYmt~G-TLRdQvIYP~~~~~~--~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQR 578 (659)
T KOG0060|consen 502 DLFFLPQRPYMTLG-TLRDQVIYPLKAEDM--DSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQR 578 (659)
T ss_pred ceEEecCCCCcccc-chhheeeccCccccc--cccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHH
Confidence 58899999988766 999999886332111 111223455677777777766543322 5899999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeC
Q 044030 185 VSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSA 255 (449)
Q Consensus 185 v~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~ 255 (449)
+++||-+.++|++-+|||-||++|......+.+.+++. |.|.|-++|.. .+.+.-|.++-|+.
T Consensus 579 La~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~------giT~iSVgHRk--SL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 579 LAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM------GITFISVGHRK--SLWKFHDYVLRMDG 641 (659)
T ss_pred HHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc------CCeEEEeccHH--HHHhhhhEEEEecC
Confidence 99999999999999999999999999999988888753 44999999986 47777888888874
|
|
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-22 Score=184.27 Aligned_cols=211 Identities=24% Similarity=0.304 Sum_probs=161.5
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
..+++.++.|+| . ...+++-|+|++++.|.-..++|.||||||||||+|+|--.- ..|.|.++|.+.-.
T Consensus 12 ~aievsgl~f~y-~----~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv---~~~~v~VlgrsaFhDt~ 83 (291)
T KOG2355|consen 12 FAIEVSGLQFKY-K----VSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMV---GGGVVQVLGRSAFHDTS 83 (291)
T ss_pred ceEEEeccEEec-c----cCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccc---cCCeEEEcCcCcccccc
Confidence 458999999983 2 455899999999999999999999999999999999996533 25899999975310
Q ss_pred --ccCcEEEEcCC----------CCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChH
Q 044030 113 --AYGTSAYVTQD----------DTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGG 180 (449)
Q Consensus 113 --~~~~i~yv~Q~----------~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgG 180 (449)
.....+|+--+ ..+-.++++.+.| |+.. +... ++-+++++.|+++ ..-+.+.+|-|
T Consensus 84 l~~Sgdl~YLGgeW~~~~~~agevplq~D~sae~mi-fgV~-----g~dp----~Rre~LI~iLDId--l~WRmHkvSDG 151 (291)
T KOG2355|consen 84 LESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMI-FGVG-----GDDP----ERREKLIDILDID--LRWRMHKVSDG 151 (291)
T ss_pred ccccCceeEecccccccccccccccccccccHHHHH-hhcc-----CCCh----hHhhhhhhheecc--ceEEEeecccc
Confidence 11223444322 2233356665544 4322 1111 3445667777664 33456789999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 181 erqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
|||||.|++.|++.-++|+|||-|-.||..++..+++.+++-+++.|. ||+..||-- +-+.....+++.|+.|+++.
T Consensus 152 qrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~Rga--tIVYATHIF-DGLe~Wpthl~yi~~Gkl~~ 228 (291)
T KOG2355|consen 152 QRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGA--TIVYATHIF-DGLETWPTHLVYIKSGKLVD 228 (291)
T ss_pred chhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCc--EEEEEeeec-cchhhcchhEEEecCCeeee
Confidence 999999999999999999999999999999999999999999987766 999999995 46888999999999999987
Q ss_pred ecChhhHHH
Q 044030 261 FGPATAANE 269 (449)
Q Consensus 261 ~g~~~~~~~ 269 (449)
.-+.+.+.+
T Consensus 229 ~l~~~~i~e 237 (291)
T KOG2355|consen 229 NLKYQKIKE 237 (291)
T ss_pred ccccchhhh
Confidence 555444433
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.2e-23 Score=203.79 Aligned_cols=192 Identities=28% Similarity=0.389 Sum_probs=150.5
Q ss_pred CCeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc
Q 044030 34 DGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA 113 (449)
Q Consensus 34 ~~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~ 113 (449)
.+-.|-+.||+|.| . +.++++++++|-|.-...+||+||||.||||||++|.|-+.|. .|+.+-|-
T Consensus 583 ~PPvLGlH~VtFgy-~----gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~---~GE~RKnh------ 648 (807)
T KOG0066|consen 583 NPPVLGLHDVTFGY-P----GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPN---DGELRKNH------ 648 (807)
T ss_pred CCCeeecccccccC-C----CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCC---cchhhccc------
Confidence 34568899999983 2 6788999999999999999999999999999999999999874 67664432
Q ss_pred cCcEEEEcCCC--CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCc-cCCCCChHHHHHHHHHHH
Q 044030 114 YGTSAYVTQDD--TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNT-RIRRLSGGQKRRVSISIE 190 (449)
Q Consensus 114 ~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~-~~~~LSgGerqRv~ia~a 190 (449)
+-+||+..|.. .+-..-|.-|+|.-.. +++. +.+...|..+||...+++ ++..||||||-||++|.-
T Consensus 649 rL~iG~FdQh~~E~L~~Eetp~EyLqr~F------Nlpy----q~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeL 718 (807)
T KOG0066|consen 649 RLRIGWFDQHANEALNGEETPVEYLQRKF------NLPY----QEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAEL 718 (807)
T ss_pred eeeeechhhhhHHhhccccCHHHHHHHhc------CCCh----HHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHH
Confidence 23588888874 4555667777774322 2222 235567889999876665 469999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCC
Q 044030 191 ILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAG 256 (449)
Q Consensus 191 L~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G 256 (449)
-+..|++|||||||++||..+...+.+.|.++. | .||++|||-. .+.+.-..++|+.+-
T Consensus 719 al~~PDvlILDEPTNNLDIESIDALaEAIney~-----G-gVi~VsHDeR-Li~eT~C~LwVvE~Q 777 (807)
T KOG0066|consen 719 ALGGPDVLILDEPTNNLDIESIDALAEAINEYN-----G-GVIMVSHDER-LIVETDCNLWVVENQ 777 (807)
T ss_pred hcCCCCEEEecCCCCCcchhhHHHHHHHHHhcc-----C-cEEEEecccc-eeeecCceEEEEccC
Confidence 999999999999999999999999999998873 2 7999999953 444444566666543
|
|
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-22 Score=190.81 Aligned_cols=171 Identities=19% Similarity=0.289 Sum_probs=110.6
Q ss_pred eeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCC----------------ceeEE--EECCEecccccCcE-EE
Q 044030 59 LEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTR----------------QTGKI--LINGHKKALAYGTS-AY 119 (449)
Q Consensus 59 L~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~----------------~~G~I--~~~g~~~~~~~~~i-~y 119 (449)
++++.+.+.+| +.+|+|||||||||||.+|+-.+..... ..+.| .+++.+.....+.+ .+
T Consensus 14 ~~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~n~~~~ 92 (213)
T cd03277 14 YDETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCDEGTIEIELYGNPGNIQVDNLCQF 92 (213)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCCCcEEEEEEEEeCCCccccCCceEE
Confidence 35666776665 8899999999999999998765522100 01111 11110000111112 24
Q ss_pred EcCCCC-CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcC-CchhhCccCCCCChHHHHHHHHHHHH----Hh
Q 044030 120 VTQDDT-LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMG-LQDAMNTRIRRLSGGQKRRVSISIEI----LT 193 (449)
Q Consensus 120 v~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~~~~LSgGerqRv~ia~aL----~~ 193 (449)
++|+.. -+..+++.|.+ ..++ ..+..+..+.+||||||||+.++.+| +.
T Consensus 93 ~~q~~~~~~~~~~~~e~l-------------------------~~~~~~~~~~~~~~~~LS~G~~q~~~i~~~la~~~~~ 147 (213)
T cd03277 93 LPQDRVGEFAKLSPIELL-------------------------VKFREGEQLQELDPHHQSGGERSVSTMLYLLSLQELT 147 (213)
T ss_pred EchHHHHHHHhCChHhHh-------------------------eeeecCCCccccchhhccccHHHHHHHHHHHHHHhcc
Confidence 444321 12233333222 1221 12334667889999999998877554 57
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcC--eEEEeeCCe
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFH--NLCLLSAGQ 257 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D--~v~~l~~G~ 257 (449)
+|+++++||||+|||+.++..+++.|++++++.| +.|+|++||++. ++.+.+| ++++|++|+
T Consensus 148 ~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g-~~~viiith~~~-~~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 148 RCPFRVVDEINQGMDPTNERKVFDMLVETACKEG-TSQYFLITPKLL-PGLNYHEKMTVLCVYNGP 211 (213)
T ss_pred CCCEEEEecccccCCHHHHHHHHHHHHHHhhcCC-CceEEEEchhhc-cCCcccCceEEEEEecCc
Confidence 9999999999999999999999999999975423 138999999964 5667776 788899886
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-22 Score=206.19 Aligned_cols=199 Identities=22% Similarity=0.274 Sum_probs=161.1
Q ss_pred CeeEEEEeeEEEEeecCccccc-ceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSS-SILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA 113 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~-~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~ 113 (449)
+-.+++.+|++.| . .+. +++.++++.++.-.-.+++|+||+||||++|++.|-+.| ..|.+.+++.
T Consensus 360 ~p~l~i~~V~f~y-~----p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~---~rgi~~~~~r----- 426 (582)
T KOG0062|consen 360 PPNLRISYVAFEY-T----PSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTP---TRGIVGRHPR----- 426 (582)
T ss_pred CCeeEEEeeeccC-C----CcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCc---ccceeeeccc-----
Confidence 3468899999873 2 222 799999999999999999999999999999999997765 3787776653
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccCCCCChHHHHHHHHHHHHH
Q 044030 114 YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSGGQKRRVSISIEIL 192 (449)
Q Consensus 114 ~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGerqRv~ia~aL~ 192 (449)
.+++|-.|...-+-++.|.+-- +....+- +.. ++.+.+.+..+||+ +.+.+.+.+||||||-||++|....
T Consensus 427 -~ri~~f~Qhhvd~l~~~v~~vd-~~~~~~p--G~~----~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~ 498 (582)
T KOG0062|consen 427 -LRIKYFAQHHVDFLDKNVNAVD-FMEKSFP--GKT----EEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTW 498 (582)
T ss_pred -ceecchhHhhhhHHHHHhHHHH-HHHHhCC--CCC----HHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhc
Confidence 4688999986555445554432 3333331 222 34577789999997 5677779999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEe
Q 044030 193 TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYF 261 (449)
Q Consensus 193 ~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~ 261 (449)
.+|-+|+|||||+.||..+...+.+.|+.+. | .||++||| .+.+..+|+.+++.++|++.-.
T Consensus 499 ~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~-----G-GVv~VSHd-~~fi~~~c~E~Wvve~g~vt~i 560 (582)
T KOG0062|consen 499 NNPHLLVLDEPTNHLDRDSLGALAKALKNFN-----G-GVVLVSHD-EEFISSLCKELWVVEDGKVTPI 560 (582)
T ss_pred CCCcEEEecCCCccccHHHHHHHHHHHHhcC-----C-cEEEEECc-HHHHhhcCceeEEEcCCcEEee
Confidence 9999999999999999999999999999873 2 79999999 5689999999999999998653
|
|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-22 Score=190.50 Aligned_cols=147 Identities=19% Similarity=0.188 Sum_probs=111.2
Q ss_pred eeeeeeEEEecCe-EEEEECCCCCcHHHHHHHHH--------cCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCC
Q 044030 58 ILEDLTGYAKPGH-LLAIMGPSGSGKTTLLDALA--------GRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLIT 128 (449)
Q Consensus 58 iL~~vs~~i~~Ge-~~~IlGpnGaGKSTLL~~l~--------G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~ 128 (449)
-+-++|+++.+|+ +++|.|||||||||||++|+ |...|. .. ...++|+.|.
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~---~~------------~~~~~~~~~~----- 75 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPA---AE------------GSSLPVFENI----- 75 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccc---cc------------cccCcCccEE-----
Confidence 3457999999995 89999999999999999998 322220 00 0012232222
Q ss_pred CCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Q 044030 129 TLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208 (449)
Q Consensus 129 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD 208 (449)
+..++..+..+.....+|+||||++.|+++ +.+|+++++|||++|||
T Consensus 76 --------------------------------~~~lg~~~~l~~~~s~fs~g~~~~~~i~~~-~~~p~llllDEp~~glD 122 (200)
T cd03280 76 --------------------------------FADIGDEQSIEQSLSTFSSHMKNIARILQH-ADPDSLVLLDELGSGTD 122 (200)
T ss_pred --------------------------------EEecCchhhhhcCcchHHHHHHHHHHHHHh-CCCCcEEEEcCCCCCCC
Confidence 111222333455567899999999999987 48999999999999999
Q ss_pred HHHHHHHH-HHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 209 SAASYYVM-SRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 209 ~~~~~~i~-~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
+..+..++ ..++.+.+ .|. ++|++||+. ++..+||++++|.+|++.+.+
T Consensus 123 ~~~~~~i~~~~l~~l~~-~~~--~vi~~tH~~--~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 123 PVEGAALAIAILEELLE-RGA--LVIATTHYG--ELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred HHHHHHHHHHHHHHHHh-cCC--EEEEECCHH--HHHHHHhcCCCeEEEEEEEec
Confidence 99999996 46787764 455 999999983 678999999999999998874
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.8e-22 Score=199.71 Aligned_cols=169 Identities=25% Similarity=0.398 Sum_probs=128.4
Q ss_pred EEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe-------------ccc-----c--cCcEEEEcCCC
Q 044030 65 YAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHK-------------KAL-----A--YGTSAYVTQDD 124 (449)
Q Consensus 65 ~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~-------------~~~-----~--~~~i~yv~Q~~ 124 (449)
..++|+++||+||||-||||-+|+|+|.+.|. =|+- ++.+ ... . .-++..=+|.-
T Consensus 96 ~pr~G~V~GilG~NGiGKsTalkILaGel~PN---LG~~--~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYV 170 (591)
T COG1245 96 TPRPGKVVGILGPNGIGKSTALKILAGELKPN---LGRY--EDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYV 170 (591)
T ss_pred CCCCCcEEEEEcCCCccHHHHHHHHhCccccC---CCCC--CCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHH
Confidence 35799999999999999999999999999874 2321 2211 000 0 00122223322
Q ss_pred ----CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEE
Q 044030 125 ----TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFL 200 (449)
Q Consensus 125 ----~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llll 200 (449)
..+.. ||.|-|.-. ..+-..+++++.|+|++..|+.+.+|||||-||++||.+++.+.+++++
T Consensus 171 d~iPk~~KG-~v~elLk~~------------de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~F 237 (591)
T COG1245 171 DLIPKVVKG-KVGELLKKV------------DERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFF 237 (591)
T ss_pred HHHHHHhcc-hHHHHHHhh------------hhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEE
Confidence 22222 555555221 1123578899999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeC
Q 044030 201 DEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSA 255 (449)
Q Consensus 201 DEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~ 255 (449)
|||||-||...+....+.++++++. ++ +||++-||+ .-+.-++|-|.++..
T Consensus 238 DEpsSyLDi~qRl~~ar~Irel~~~-~k--~ViVVEHDL-avLD~lsD~vhI~YG 288 (591)
T COG1245 238 DEPSSYLDIRQRLNAARVIRELAED-GK--YVIVVEHDL-AVLDYLSDFVHILYG 288 (591)
T ss_pred cCCcccccHHHHHHHHHHHHHHhcc-CC--eEEEEechH-HHHHHhhheeEEEec
Confidence 9999999999999999999999954 44 999999996 456667898888873
|
|
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.3e-20 Score=172.02 Aligned_cols=74 Identities=22% Similarity=0.269 Sum_probs=66.9
Q ss_pred CChHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEE
Q 044030 177 LSGGQKRRVSISIEIL----TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCL 252 (449)
Q Consensus 177 LSgGerqRv~ia~aL~----~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~ 252 (449)
||||||||++||++++ .+|+++++|||+++||+..+..+.+.|++++++ |. |+|++||++ +....+|+++.
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~-g~--tiIiiSH~~--~~~~~adrvi~ 169 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKH-TS--QFIVITLKK--EMFENADKLIG 169 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CC--EEEEEECCH--HHHhhCCeEEE
Confidence 9999999999999996 699999999999999999999999999999754 45 999999996 35578999999
Q ss_pred eeC
Q 044030 253 LSA 255 (449)
Q Consensus 253 l~~ 255 (449)
+..
T Consensus 170 i~~ 172 (178)
T cd03239 170 VLF 172 (178)
T ss_pred EEE
Confidence 975
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-20 Score=190.95 Aligned_cols=189 Identities=23% Similarity=0.373 Sum_probs=139.3
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCc
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGT 116 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~ 116 (449)
.|.++||-+- .+ ....++..++|.|++|-.+.|+||||||||+|+++|+|+.|- +.|.... ....+
T Consensus 481 gI~lenIpvI-tP----~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPv---y~g~L~~------P~~~~ 546 (728)
T KOG0064|consen 481 GIILENIPVI-TP----AGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPV---YNGLLSI------PRPNN 546 (728)
T ss_pred ceEEecCcee-cc----CcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcc---cCCeeec------CCCcc
Confidence 4778888764 22 456789999999999999999999999999999999999854 3444432 12345
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHh---ccCCCCCCHHHHHHHHHHHHHHcCCchhhCccC---------CCCChHHHHH
Q 044030 117 SAYVTQDDTLITTLTVKEAVYYSAQ---LQLPDTMPKSDKKERAEVTIREMGLQDAMNTRI---------RRLSGGQKRR 184 (449)
Q Consensus 117 i~yv~Q~~~l~~~lTv~e~l~~~~~---~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~---------~~LSgGerqR 184 (449)
+.|+||.|..-- =|.+|.+-+.-. ++ ..+.. ++....+|+.+.|++.+.+-. ..||||||||
T Consensus 547 mFYIPQRPYms~-gtlRDQIIYPdS~e~~~-~kg~~----d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR 620 (728)
T KOG0064|consen 547 IFYIPQRPYMSG-GTLRDQIIYPDSSEQMK-RKGYT----DQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQR 620 (728)
T ss_pred eEeccCCCccCc-CcccceeecCCcHHHHH-hcCCC----HHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHH
Confidence 899999987653 366666644311 11 01122 234566777777776665544 4799999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEe
Q 044030 185 VSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLL 253 (449)
Q Consensus 185 v~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l 253 (449)
+++||.+.++|+.-+|||-||+..+.....+.+..++ .|. +.|-+||+|+ +.++-..++-.
T Consensus 621 ~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~----~gi--~llsithrps--lwk~h~~ll~~ 681 (728)
T KOG0064|consen 621 MGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD----AGI--SLLSITHRPS--LWKYHTHLLEF 681 (728)
T ss_pred HHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh----cCc--eEEEeecCcc--HHHHHHHHHhc
Confidence 9999999999999999999999998888888776654 444 9999999985 55554444443
|
|
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.83 E-value=1e-20 Score=177.41 Aligned_cols=147 Identities=17% Similarity=0.144 Sum_probs=106.4
Q ss_pred cceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHH
Q 044030 56 SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEA 135 (449)
Q Consensus 56 ~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~ 135 (449)
+.+++|+++.. |++++|+||||||||||+|+|+|... +...|.++.. ..+++|.+.+++.+|+.|+
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~--------l~~~G~~v~a----~~~~~q~~~l~~~~~~~d~ 79 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI--------LAQAGAPVCA----SSFELPPVKIFTSIRVSDD 79 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH--------HHHcCCEEec----CccCcccceEEEeccchhc
Confidence 45778887765 79999999999999999999998542 1123433221 1366777788999999999
Q ss_pred HHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHH
Q 044030 136 VYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYV 215 (449)
Q Consensus 136 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i 215 (449)
+.++... ...+ .+++.++++.+++ .+|+++++||||+|+|+..+..+
T Consensus 80 l~~~~s~------~~~e-~~~~~~iL~~~~~--------------------------~~p~llllDEp~~glD~~~~~~l 126 (199)
T cd03283 80 LRDGISY------FYAE-LRRLKEIVEKAKK--------------------------GEPVLFLLDEIFKGTNSRERQAA 126 (199)
T ss_pred cccccCh------HHHH-HHHHHHHHHhccC--------------------------CCCeEEEEecccCCCCHHHHHHH
Confidence 9775421 1222 2567778887763 79999999999999999999877
Q ss_pred H-HHHHHHHhhcCCCeEEEEEecCCcHHHHhh--cCeEEEe
Q 044030 216 M-SRIAKLGQRDGIGRTIIASIHQPSSEVFQL--FHNLCLL 253 (449)
Q Consensus 216 ~-~~l~~l~~~~g~g~tii~~tH~~~~~i~~~--~D~v~~l 253 (449)
. .+++.+.+ .|. |+|++||++. .+..+ .+++..+
T Consensus 127 ~~~ll~~l~~-~~~--tiiivTH~~~-~~~~~~~~~~v~~~ 163 (199)
T cd03283 127 SAAVLKFLKN-KNT--IGIISTHDLE-LADLLDLDSAVRNY 163 (199)
T ss_pred HHHHHHHHHH-CCC--EEEEEcCcHH-HHHhhhcCCCeEEE
Confidence 5 47888874 455 9999999963 45443 3444443
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.6e-21 Score=181.68 Aligned_cols=154 Identities=18% Similarity=0.193 Sum_probs=116.0
Q ss_pred ccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEE-EEcCCCCCCCCCCHH
Q 044030 55 SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSA-YVTQDDTLITTLTVK 133 (449)
Q Consensus 55 ~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~-yv~Q~~~l~~~lTv~ 133 (449)
.+.+.+|++++.++|++++|.||||+||||||++++-.. . ..++| |||.+...++
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~------------------~-la~~g~~vpa~~~~~~----- 71 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIV------------------L-MAQIGCFVPCDSADIP----- 71 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHH------------------H-HHHhCCCcCcccEEEe-----
Confidence 456899999999999999999999999999999997210 0 01122 4554332211
Q ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHH--HhCCCEEEEeCC---CCCCC
Q 044030 134 EAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEI--LTRPKLLFLDEP---TSGLD 208 (449)
Q Consensus 134 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL--~~~P~llllDEP---tsgLD 208 (449)
.+++++..+++.+. ..+++|.|+++++.+++++ +.+|+++||||| |++||
T Consensus 72 ----------------------~~~~il~~~~l~d~---~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD 126 (222)
T cd03285 72 ----------------------IVDCILARVGASDS---QLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYD 126 (222)
T ss_pred ----------------------ccceeEeeeccccc---hhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHH
Confidence 12334455566533 3678999999999999999 899999999999 89999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 209 SAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 209 ~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
+..... ..++.+.++.|. ++|++||+ .++.++||++..+++|++...+.
T Consensus 127 ~~~~~~--~il~~l~~~~~~--~vlisTH~--~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 127 GFGLAW--AIAEYIATQIKC--FCLFATHF--HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred HHHHHH--HHHHHHHhcCCC--eEEEEech--HHHHHHhhcCCCeEEEEEEEEEe
Confidence 988854 344555533445 99999997 47899999999999999987764
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.9e-20 Score=183.44 Aligned_cols=186 Identities=28% Similarity=0.404 Sum_probs=143.2
Q ss_pred cccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCC-----CCCceeEEEECCEecccccCcEEEEcCCCC-CC
Q 044030 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGS-----DTRQTGKILINGHKKALAYGTSAYVTQDDT-LI 127 (449)
Q Consensus 54 ~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~-----~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~-l~ 127 (449)
....+|+|||+++++|++++|+|+|||||||||++|+|.... ..+.+|.|.+--.. ..+.+|.+.. -|
T Consensus 394 ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt------~~a~iPge~Ep~f 467 (593)
T COG2401 394 IERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT------VSALIPGEYEPEF 467 (593)
T ss_pred eeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc------hhhccCccccccc
Confidence 346799999999999999999999999999999999996532 12346777653221 2345555432 24
Q ss_pred CCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch--hhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 044030 128 TTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD--AMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTS 205 (449)
Q Consensus 128 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPts 205 (449)
...|+.|++.-- .. .-..+.++|...|+.+ ..-.+.++||-|||.|+.||.++...|.+++.||=.|
T Consensus 468 ~~~tilehl~s~---------tG--D~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~A 536 (593)
T COG2401 468 GEVTILEHLRSK---------TG--DLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAA 536 (593)
T ss_pred CchhHHHHHhhc---------cC--chhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhh
Confidence 455777776211 00 1123567899999965 3466779999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhh-cCeEEEeeCCeEE
Q 044030 206 GLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQL-FHNLCLLSAGQTV 259 (449)
Q Consensus 206 gLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~-~D~v~~l~~G~iv 259 (449)
.||+.++..+.+-|.+++++.|. |++++||.| +.+-.+ -|+++++.=|...
T Consensus 537 hLD~~TA~rVArkiselaRe~gi--TlivvThrp-Ev~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 537 HLDELTAVRVARKISELAREAGI--TLIVVTHRP-EVGNALRPDTLILVGYGKVP 588 (593)
T ss_pred hcCHHHHHHHHHHHHHHHHHhCC--eEEEEecCH-HHHhccCCceeEEeeccccc
Confidence 99999999999999999988876 999999997 345555 5888888766543
|
|
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-19 Score=178.46 Aligned_cols=77 Identities=19% Similarity=0.339 Sum_probs=68.2
Q ss_pred CCCChHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeE
Q 044030 175 RRLSGGQKRRVSISIEILT----RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNL 250 (449)
Q Consensus 175 ~~LSgGerqRv~ia~aL~~----~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v 250 (449)
..|||||+||+++|++++. +|+++++||||++||+.....+.+.|+++++ +. |+|++||++. +...+|++
T Consensus 169 ~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~--~~--tii~isH~~~--~~~~~d~~ 242 (276)
T cd03241 169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR--SH--QVLCITHLPQ--VAAMADNH 242 (276)
T ss_pred hhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CC--EEEEEechHH--HHHhcCcE
Confidence 3499999999999987654 9999999999999999999999999999863 34 9999999973 56899999
Q ss_pred EEeeCCe
Q 044030 251 CLLSAGQ 257 (449)
Q Consensus 251 ~~l~~G~ 257 (449)
++|.+|.
T Consensus 243 ~~l~~~~ 249 (276)
T cd03241 243 FLVEKEV 249 (276)
T ss_pred EEEEEec
Confidence 9998764
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-19 Score=164.04 Aligned_cols=141 Identities=26% Similarity=0.319 Sum_probs=99.9
Q ss_pred eeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHHHHH
Q 044030 59 LEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYY 138 (449)
Q Consensus 59 L~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~ 138 (449)
....+..+.++.++.|+|||||||||+++++....-. ..|.+..... . +.-.++++....+
T Consensus 11 ~~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~---~~~~~~~~~~-~----~~g~~~~~~~~~~----------- 71 (162)
T cd03227 11 FVPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGG---AQSATRRRSG-V----KAGCIVAAVSAEL----------- 71 (162)
T ss_pred EeccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHh---cchhhhccCc-c----cCCCcceeeEEEE-----------
Confidence 3445555666679999999999999999998765422 1222222110 0 0001112111111
Q ss_pred HHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHH
Q 044030 139 SAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT----RPKLLFLDEPTSGLDSAASYY 214 (449)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~----~P~llllDEPtsgLD~~~~~~ 214 (449)
.. ...+||+||+||+++|++|+. +|+++++|||++|+|+.....
T Consensus 72 ---i~-----------------------------~~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~ 119 (162)
T cd03227 72 ---IF-----------------------------TRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQA 119 (162)
T ss_pred ---eh-----------------------------heeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHH
Confidence 00 001299999999999999987 789999999999999999999
Q ss_pred HHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeC
Q 044030 215 VMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSA 255 (449)
Q Consensus 215 i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~ 255 (449)
+.+.+.++.++ +. ++|++||++ ++...+|+++.|..
T Consensus 120 l~~~l~~~~~~-~~--~vii~TH~~--~~~~~~d~~~~l~~ 155 (162)
T cd03227 120 LAEAILEHLVK-GA--QVIVITHLP--ELAELADKLIHIKK 155 (162)
T ss_pred HHHHHHHHHhc-CC--EEEEEcCCH--HHHHhhhhEEEEEE
Confidence 99999998755 55 999999996 45678999999864
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.9e-19 Score=204.17 Aligned_cols=126 Identities=20% Similarity=0.294 Sum_probs=104.5
Q ss_pred CCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchh-hCccCCCCChHHHHHHHHHHHHHhC---CCEEEEeCCC
Q 044030 129 TLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDA-MNTRIRRLSGGQKRRVSISIEILTR---PKLLFLDEPT 204 (449)
Q Consensus 129 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~~~~LSgGerqRv~ia~aL~~~---P~llllDEPt 204 (449)
+|||.|.+.|.... ..-.+.-+.|..+||... +.++...|||||.||+-||..|..+ +.+++|||||
T Consensus 1660 ~mtv~ea~~~F~~~---------~~i~~~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt 1730 (1809)
T PRK00635 1660 QTPIEEVAETFPFL---------KKIQKPLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIA 1730 (1809)
T ss_pred cCCHHHHHHHhhcc---------HHHHHHHHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCC
Confidence 46777777665321 112334577889999864 6889999999999999999999876 7899999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEee------CCeEEEecChhhHH
Q 044030 205 SGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLS------AGQTVYFGPATAAN 268 (449)
Q Consensus 205 sgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~------~G~iv~~g~~~~~~ 268 (449)
+||++.....+++.|++|.+ .|. |||++.|++ ++...||.|+-|- .|+|++.|+|+++.
T Consensus 1731 ~GLh~~d~~~Ll~~l~~L~~-~g~--tvivieH~~--~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~ 1795 (1809)
T PRK00635 1731 TSLDNQQKSALLVQLRTLVS-LGH--SVIYIDHDP--ALLKQADYLIEMGPGSGKTGGKILFSGPPKDIS 1795 (1809)
T ss_pred CCCCHHHHHHHHHHHHHHHh-cCC--eEEEEeCCH--HHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHh
Confidence 99999999999999999984 454 999999996 5777899999984 57999999999885
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-20 Score=187.98 Aligned_cols=214 Identities=20% Similarity=0.309 Sum_probs=152.9
Q ss_pred CCCeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec--
Q 044030 33 DDGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKK-- 110 (449)
Q Consensus 33 ~~~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~-- 110 (449)
...+.|.++|.+.+ . .++.++.|.|++|-.|..++++||||-||||||+.|+.+.-. .+..=+|++-.+.+
T Consensus 260 Ena~DIKiEnF~IS-A-----~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~Rala-IPpnIDvLlCEQEvva 332 (807)
T KOG0066|consen 260 ENAMDIKIENFDIS-A-----QGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALA-IPPNIDVLLCEQEVVA 332 (807)
T ss_pred hhcccceeeeeeee-c-----ccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhcc-CCCCCceEeeeeeeee
Confidence 34677899999987 2 456799999999999999999999999999999999987421 01122333332211
Q ss_pred ------c----cccCcEEEEcCCCC-----CCCCCCHHHHHHHH-HhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCcc
Q 044030 111 ------A----LAYGTSAYVTQDDT-----LITTLTVKEAVYYS-AQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTR 173 (449)
Q Consensus 111 ------~----~~~~~i~yv~Q~~~-----l~~~lTv~e~l~~~-~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ 173 (449)
. ...++...+-.+.. --...|+.|-+.-. ..++. .-....+.++..+|.-||.+ +..+++
T Consensus 333 d~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELra---iGA~sAEarARRILAGLGFskEMQ~rP 409 (807)
T KOG0066|consen 333 DSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRA---IGADSAEARARRILAGLGFSKEMQERP 409 (807)
T ss_pred cCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHH---hccccchhHHHHHHhhcCCChhHhcCC
Confidence 0 00011111111110 11234565555322 12221 11122345677889999997 466778
Q ss_pred CCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEe
Q 044030 174 IRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLL 253 (449)
Q Consensus 174 ~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l 253 (449)
...+|||-|.||++||||...|-+|+|||||+.||..+..-+-+.|+.|.+ |.++++||- ..+...|..|+.|
T Consensus 410 t~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkK------TLLIVSHDQ-gFLD~VCtdIIHL 482 (807)
T KOG0066|consen 410 TTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKK------TLLIVSHDQ-GFLDSVCTDIIHL 482 (807)
T ss_pred ccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhh------eeEEEeccc-chHHHHHHHHhhh
Confidence 899999999999999999999999999999999999999888899998863 999999995 5889999999999
Q ss_pred eCCeEEEe-cC
Q 044030 254 SAGQTVYF-GP 263 (449)
Q Consensus 254 ~~G~iv~~-g~ 263 (449)
++-++-|+ |.
T Consensus 483 D~qkLhyYrGN 493 (807)
T KOG0066|consen 483 DNQKLHYYRGN 493 (807)
T ss_pred hhhhhhhhcch
Confidence 98887554 54
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-18 Score=184.93 Aligned_cols=127 Identities=28% Similarity=0.414 Sum_probs=106.4
Q ss_pred CCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch-hhCccCCCCChHHHHHHHHHHHHHhCC---CEEEEeCCC
Q 044030 129 TLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD-AMNTRIRRLSGGQKRRVSISIEILTRP---KLLFLDEPT 204 (449)
Q Consensus 129 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LSgGerqRv~ia~aL~~~P---~llllDEPt 204 (449)
+|||.|...|+... + .-.+.-+.|..+||.. .+.++...|||||.|||-+|.+|.... -+++|||||
T Consensus 783 ~MTveEA~~FF~~~------p---~I~rkLqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPT 853 (935)
T COG0178 783 DMTVEEALEFFEAI------P---KIARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPT 853 (935)
T ss_pred hccHHHHHHHHhcc------h---HHHHHHHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCC
Confidence 47888887776432 1 1233456677889975 468888999999999999999999887 899999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEe------eCCeEEEecChhhHHH
Q 044030 205 SGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLL------SAGQTVYFGPATAANE 269 (449)
Q Consensus 205 sgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l------~~G~iv~~g~~~~~~~ 269 (449)
+||-.....++++.|.+|.+ .|. |||++-|++ ++.+.+|.|+=| ..|+|++.|+|+++.+
T Consensus 854 TGLH~~Di~kLl~VL~rLvd-~Gn--TViVIEHNL--dVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 854 TGLHFDDIKKLLEVLHRLVD-KGN--TVIVIEHNL--DVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred CCCCHHHHHHHHHHHHHHHh-CCC--EEEEEeccc--ceEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 99999999999999999995 454 999999996 588999999998 3579999999998864
|
|
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-19 Score=170.35 Aligned_cols=156 Identities=16% Similarity=0.160 Sum_probs=103.7
Q ss_pred eeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHHHHHH
Q 044030 60 EDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYS 139 (449)
Q Consensus 60 ~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~ 139 (449)
-..++++.+|++++|+|||||||||||++|++..-. ...|.... . ....++|..| ++..++..+
T Consensus 20 ~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~--~~~g~~~~-~-----~~~~i~~~dq---i~~~~~~~d----- 83 (202)
T cd03243 20 VPNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLL--AQIGCFVP-A-----ESASIPLVDR---IFTRIGAED----- 83 (202)
T ss_pred EeeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHH--HHcCCCcc-c-----cccccCCcCE---EEEEecCcc-----
Confidence 344566668999999999999999999999954311 01221100 0 0112233222 111111111
Q ss_pred HhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-H
Q 044030 140 AQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMS-R 218 (449)
Q Consensus 140 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~-~ 218 (449)
..+.....++++++ ++..+.+++.+|+++++||||+|+|+.....+.. +
T Consensus 84 -----------------------------~i~~~~s~~~~e~~-~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~l 133 (202)
T cd03243 84 -----------------------------SISDGRSTFMAELL-ELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAV 133 (202)
T ss_pred -----------------------------cccCCceeHHHHHH-HHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHH
Confidence 11222344565555 4777788899999999999999999998888765 4
Q ss_pred HHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhh
Q 044030 219 IAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATA 266 (449)
Q Consensus 219 l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~ 266 (449)
++.+. +.+. ++|++||++ ++...++++..+..|++...+...+
T Consensus 134 l~~l~-~~~~--~vi~~tH~~--~~~~~~~~~~~l~~~~~~~~~~~~~ 176 (202)
T cd03243 134 LEHLL-EKGC--RTLFATHFH--ELADLPEQVPGVKNLHMEELITTGG 176 (202)
T ss_pred HHHHH-hcCC--eEEEECChH--HHHHHhhcCCCeEEEEEEEEecCCe
Confidence 66665 3454 999999985 5778899999999999998886543
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.6e-18 Score=193.68 Aligned_cols=136 Identities=22% Similarity=0.369 Sum_probs=110.4
Q ss_pred CCCCCHHHHHHHHHhccCCCC-CC-----HHHHHHHHHHHHHHcCCchh-hCccCCCCChHHHHHHHHHHHHHhCC--CE
Q 044030 127 ITTLTVKEAVYYSAQLQLPDT-MP-----KSDKKERAEVTIREMGLQDA-MNTRIRRLSGGQKRRVSISIEILTRP--KL 197 (449)
Q Consensus 127 ~~~lTv~e~l~~~~~~~~~~~-~~-----~~~~~~~v~~~l~~lgL~~~-~~~~~~~LSgGerqRv~ia~aL~~~P--~l 197 (449)
+..+||.|.+.|...+..+.. .. ..+..++++ .++.+||.+. +|+++.+|||||+|||.||++|+.+| ++
T Consensus 434 ~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~l 512 (943)
T PRK00349 434 VSELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVL 512 (943)
T ss_pred HhcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcE
Confidence 456899999998554422110 00 012234443 6888999876 79999999999999999999999997 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEe------eCCeEEEecChhhHH
Q 044030 198 LFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLL------SAGQTVYFGPATAAN 268 (449)
Q Consensus 198 lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l------~~G~iv~~g~~~~~~ 268 (449)
++|||||+|||+..+..+++.|+++++ .|. |||+++|++. ++ ..||+|++| ++|++++.|+++++.
T Consensus 513 lILDEPtagLd~~~~~~L~~~L~~L~~-~G~--TVIvVeH~~~-~i-~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~ 584 (943)
T PRK00349 513 YVLDEPSIGLHQRDNDRLIETLKHLRD-LGN--TLIVVEHDED-TI-RAADYIVDIGPGAGVHGGEVVASGTPEEIM 584 (943)
T ss_pred EEecCCccCCCHHHHHHHHHHHHHHHh-CCC--EEEEEeCCHH-HH-HhCCEEEEeccccCCCCCEEeeccCHHHHh
Confidence 999999999999999999999999974 455 9999999964 55 469999999 999999999998763
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.2e-18 Score=192.31 Aligned_cols=136 Identities=24% Similarity=0.365 Sum_probs=108.6
Q ss_pred CCCCCHHHHHHHHHhccCCCCCCH------HHHHHHHHHHHHHcCCchh-hCccCCCCChHHHHHHHHHHHHHhCC--CE
Q 044030 127 ITTLTVKEAVYYSAQLQLPDTMPK------SDKKERAEVTIREMGLQDA-MNTRIRRLSGGQKRRVSISIEILTRP--KL 197 (449)
Q Consensus 127 ~~~lTv~e~l~~~~~~~~~~~~~~------~~~~~~v~~~l~~lgL~~~-~~~~~~~LSgGerqRv~ia~aL~~~P--~l 197 (449)
+..|||.|.+.|...+........ .+..+++ +.+..+||... +++.+.+|||||+|||.||++|+.+| ++
T Consensus 432 ~~~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~l 510 (924)
T TIGR00630 432 VSELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVL 510 (924)
T ss_pred HhcCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcE
Confidence 346899999988766532110000 0111222 34677899765 79999999999999999999999986 89
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEe------eCCeEEEecChhhHH
Q 044030 198 LFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLL------SAGQTVYFGPATAAN 268 (449)
Q Consensus 198 lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l------~~G~iv~~g~~~~~~ 268 (449)
+||||||+|||+.....+++.|++++++ |. |||+++|++ +.+ ..||++++| ++|++++.|+++++.
T Consensus 511 lILDEPtagLD~~~~~~L~~~L~~L~~~-G~--TVIvVeHd~-~~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 511 YVLDEPSIGLHQRDNERLINTLKRLRDL-GN--TVIVVEHDE-ETI-RAADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred EEEcCCccCCCHHHHHHHHHHHHHHHhC-CC--EEEEEECCH-HHH-hhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 9999999999999999999999999854 55 999999996 445 589999999 899999999998763
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.74 E-value=3e-18 Score=161.25 Aligned_cols=136 Identities=19% Similarity=0.252 Sum_probs=99.6
Q ss_pred ccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHH
Q 044030 55 SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKE 134 (449)
Q Consensus 55 ~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e 134 (449)
+..+.+|+++++++|++++|+||||+||||+++++++..-- +.+ -.|| +...+.+++.|
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~l-----a~~-------------G~~v---pa~~~~l~~~d 73 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIM-----AQI-------------GCFV---PAEYATLPIFN 73 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHH-----HHc-------------CCCc---chhhcCccChh
Confidence 45789999999999999999999999999999999986311 100 1133 23344556666
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHH
Q 044030 135 AVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYY 214 (449)
Q Consensus 135 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~ 214 (449)
++.. .++..+..++....+|+|++|+ ..+.+++.+|+++++|||++|+|+.....
T Consensus 74 ~I~~------------------------~~~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~ 128 (204)
T cd03282 74 RLLS------------------------RLSNDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFA 128 (204)
T ss_pred heeE------------------------ecCCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHH
Confidence 6532 2233333455567899999965 56677889999999999999999977666
Q ss_pred H-HHHHHHHHhhcCCCeEEEEEecCC
Q 044030 215 V-MSRIAKLGQRDGIGRTIIASIHQP 239 (449)
Q Consensus 215 i-~~~l~~l~~~~g~g~tii~~tH~~ 239 (449)
+ ...++.+.+ .|. ++|++||+.
T Consensus 129 l~~~il~~l~~-~~~--~~i~~TH~~ 151 (204)
T cd03282 129 ISLAILECLIK-KES--TVFFATHFR 151 (204)
T ss_pred HHHHHHHHHHh-cCC--EEEEECChH
Confidence 5 456777764 455 999999995
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.7e-17 Score=157.86 Aligned_cols=76 Identities=18% Similarity=0.259 Sum_probs=62.9
Q ss_pred CCCChHHHHHHHHHHHHH---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHh
Q 044030 175 RRLSGGQKRRVSISIEIL---------TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQ 245 (449)
Q Consensus 175 ~~LSgGerqRv~ia~aL~---------~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~ 245 (449)
.-+|+||||+++||++|+ .+|+++++||||++||+..+..+.+.|++++ . ++|.++|. ..+..
T Consensus 182 ~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~----q--~ii~~~~~--~~~~~ 253 (270)
T cd03242 182 DFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV----Q--TFVTTTDL--ADFDA 253 (270)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC----C--EEEEeCCc--hhccc
Confidence 558999999999999985 6999999999999999999999999998652 2 55555444 35667
Q ss_pred hc---CeEEEeeCCeE
Q 044030 246 LF---HNLCLLSAGQT 258 (449)
Q Consensus 246 ~~---D~v~~l~~G~i 258 (449)
+| ++++.+++|++
T Consensus 254 ~~~~~~~i~~l~~g~i 269 (270)
T cd03242 254 LWLRRAQIFRVDAGTL 269 (270)
T ss_pred hhccCccEEEEeCcEE
Confidence 77 68999999986
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.6e-17 Score=155.38 Aligned_cols=159 Identities=17% Similarity=0.111 Sum_probs=107.0
Q ss_pred cceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHH
Q 044030 56 SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEA 135 (449)
Q Consensus 56 ~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~ 135 (449)
+.+.+|++++.++ ++++|+||||||||||||+|++..-. |. .|.........++|+.| +++.+++.++
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l-----~~---~g~~vp~~~~~i~~~~~---i~~~~~~~~~ 85 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL-----AQ---IGSFVPASKAEIGVVDR---IFTRIGASDD 85 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH-----hc---cCCeeccccceecceee---EeccCCchhh
Confidence 4588999999888 99999999999999999999875421 11 12222112235666654 5677788777
Q ss_pred HHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCC---CCCCCHHHH
Q 044030 136 VYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEP---TSGLDSAAS 212 (449)
Q Consensus 136 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEP---tsgLD~~~~ 212 (449)
+..+.. .- ..|.++++-+.+.+.+|++++|||| |+++|....
T Consensus 86 ls~g~s--------~f---------------------------~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~ 130 (216)
T cd03284 86 LAGGRS--------TF---------------------------MVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSI 130 (216)
T ss_pred hccCcc--------hH---------------------------HHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH
Confidence 743310 00 1122233333334579999999999 888887552
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 213 YYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 213 ~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
...+++.+.+..+. ++|++||+. ++.+++|++..+.+|++...+..+++
T Consensus 131 --~~~il~~l~~~~~~--~vi~~TH~~--~l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 131 --AWAIVEYLHEKIGA--KTLFATHYH--ELTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred --HHHHHHHHHhccCC--cEEEEeCcH--HHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 23344555433355 999999994 67889999888888998887766554
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.6e-16 Score=151.51 Aligned_cols=137 Identities=27% Similarity=0.310 Sum_probs=93.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---c---cCcEEEEcCCCCCCCCCCHHHHHHHHHhcc
Q 044030 70 HLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---A---YGTSAYVTQDDTLITTLTVKEAVYYSAQLQ 143 (449)
Q Consensus 70 e~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---~---~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~ 143 (449)
.-++|+||||||||||+++|+|.++++ +|+|.++|+++.. . ...+++++|.+ +.+.++|.++..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~---~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~------ 181 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTG---ISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCP------ 181 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCC---CceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccch------
Confidence 578999999999999999999999874 8999999987531 1 12456777754 334555554421
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 044030 144 LPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLG 223 (449)
Q Consensus 144 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~ 223 (449)
+. . | ........+|+++++|||++ ...+..+++.+.
T Consensus 182 ------k~------~---------------------~-----~~~~i~~~~P~villDE~~~------~e~~~~l~~~~~ 217 (270)
T TIGR02858 182 ------KA------E---------------------G-----MMMLIRSMSPDVIVVDEIGR------EEDVEALLEALH 217 (270)
T ss_pred ------HH------H---------------------H-----HHHHHHhCCCCEEEEeCCCc------HHHHHHHHHHHh
Confidence 00 0 1 12233346999999999974 334555555553
Q ss_pred hhcCCCeEEEEEecCCcHH-H-----------HhhcCeEEEeeCCeEEEecChhh
Q 044030 224 QRDGIGRTIIASIHQPSSE-V-----------FQLFHNLCLLSAGQTVYFGPATA 266 (449)
Q Consensus 224 ~~~g~g~tii~~tH~~~~~-i-----------~~~~D~v~~l~~G~iv~~g~~~~ 266 (449)
.| .++|+++|++..+ + ..+||++++|++|+ ..|.+++
T Consensus 218 --~G--~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~ 266 (270)
T TIGR02858 218 --AG--VSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEA 266 (270)
T ss_pred --CC--CEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceee
Confidence 34 4999999985321 2 26689999999887 5565543
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-15 Score=152.99 Aligned_cols=180 Identities=21% Similarity=0.308 Sum_probs=138.1
Q ss_pred cccceeeeeeEEEecC-----eEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCC
Q 044030 54 GSSSILEDLTGYAKPG-----HLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLIT 128 (449)
Q Consensus 54 ~~~~iL~~vs~~i~~G-----e~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~ 128 (449)
+.+.-+-+..+.|+.| |++..+|.||.|||||+++++|+++|+ ..|+|-. -.++|=||...-=.
T Consensus 347 ~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd--~~~e~p~---------lnVSykpqkispK~ 415 (592)
T KOG0063|consen 347 KMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPD--EGGEIPV---------LNVSYKPQKISPKR 415 (592)
T ss_pred cceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCC--ccCcccc---------cceeccccccCccc
Confidence 3445667777777766 688999999999999999999999886 2344422 13678888755444
Q ss_pred CCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Q 044030 129 TLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208 (449)
Q Consensus 129 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD 208 (449)
.-||++.+.--.+- .-...+.+.++++-|.+++..|+-+.+|||||.|||++|..|=..+++++.|||.+-||
T Consensus 416 ~~tvR~ll~~kIr~-------ay~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylD 488 (592)
T KOG0063|consen 416 EGTVRQLLHTKIRD-------AYMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLD 488 (592)
T ss_pred cchHHHHHHHHhHh-------hhcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcC
Confidence 55888877432111 11123457788899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEee
Q 044030 209 SAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLS 254 (449)
Q Consensus 209 ~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~ 254 (449)
+..+...-..+++.-=... +|-.++.||.. -.--++||+++..
T Consensus 489 SeQRi~AskvikRfilhak--ktafvVEhdfI-maTYladrvivf~ 531 (592)
T KOG0063|consen 489 SEQRIIASKVIKRFILHAK--KTAFVVEHDFI-MATYLADRVIVFE 531 (592)
T ss_pred hHHHHHHHHHHHHHHHhcc--chhhhhhhHHH-HHHhhcceeEEEe
Confidence 9999998888888653333 49999999953 3334788888764
|
|
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-16 Score=148.08 Aligned_cols=93 Identities=16% Similarity=0.119 Sum_probs=65.0
Q ss_pred cCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhhcCCCeEEEEEecCCcHH
Q 044030 164 MGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVM-SRIAKLGQRDGIGRTIIASIHQPSSE 242 (449)
Q Consensus 164 lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~-~~l~~l~~~~g~g~tii~~tH~~~~~ 242 (449)
+++.+..++....+|+|++|...+.. .+.+|+++++|||++|+|+.....+. .+++.+.++.+. ++|++||++ +
T Consensus 49 ~~~~d~~~~~~s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~--~iii~TH~~--~ 123 (185)
T smart00534 49 IGASDSLAQGLSTFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGA--LTLFATHYH--E 123 (185)
T ss_pred eCCCCchhccccHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCC--eEEEEecHH--H
Confidence 44444556667788988887433332 24599999999999999999877764 556777643355 999999995 5
Q ss_pred HHhhcCeEEEeeCCeEEEe
Q 044030 243 VFQLFHNLCLLSAGQTVYF 261 (449)
Q Consensus 243 i~~~~D~v~~l~~G~iv~~ 261 (449)
+.+++|+.--+..+++...
T Consensus 124 l~~~~~~~~~v~~~~~~~~ 142 (185)
T smart00534 124 LTKLADEHPGVRNLHMSAD 142 (185)
T ss_pred HHHHhhcCccceEEEEEEE
Confidence 7888886444444544433
|
|
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-14 Score=138.40 Aligned_cols=88 Identities=25% Similarity=0.399 Sum_probs=65.3
Q ss_pred HHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCe
Q 044030 155 ERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEIL----TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGR 230 (449)
Q Consensus 155 ~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~----~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~ 230 (449)
..+.+.+...++... .||||||.+++||.-|+ ...++++||||.++||...+..+.++|+++.+ +.
T Consensus 121 ~~~~~~l~~~~i~~~------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~----~~ 190 (220)
T PF02463_consen 121 KDLEELLPEVGISPE------FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK----QS 190 (220)
T ss_dssp HHHHHHHHCTTTTTT------GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT----TS
T ss_pred ccccccccccccccc------ccccccccccccccccccccccccccccccccccccccccccccccccccccc----cc
Confidence 445556666655432 89999999999987664 36789999999999999999999999999874 23
Q ss_pred EEEEEecCCcHHHHhhcCeEEEee
Q 044030 231 TIIASIHQPSSEVFQLFHNLCLLS 254 (449)
Q Consensus 231 tii~~tH~~~~~i~~~~D~v~~l~ 254 (449)
-+|++||++ .++..+|+.+.+.
T Consensus 191 Q~ii~Th~~--~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 191 QFIITTHNP--EMFEDADKLIGVT 212 (220)
T ss_dssp EEEEE-S-H--HHHTT-SEEEEEE
T ss_pred ccccccccc--ccccccccccccc
Confidence 799999994 6899999887764
|
The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A .... |
| >PRK00064 recF recombination protein F; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.3e-13 Score=136.95 Aligned_cols=77 Identities=18% Similarity=0.345 Sum_probs=65.3
Q ss_pred CCCChHHHHHHHHHHHHH---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHh
Q 044030 175 RRLSGGQKRRVSISIEIL---------TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQ 245 (449)
Q Consensus 175 ~~LSgGerqRv~ia~aL~---------~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~ 245 (449)
..+|.||+|++.+|+.|+ .+|++++||||+++||+..+..+++.|.++ +. .+++++|++. .+..
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~----~~--qv~it~~~~~-~~~~ 344 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL----GA--QVFITTTDLE-DLAD 344 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc----CC--EEEEEcCChh-hhhh
Confidence 579999999999999886 699999999999999999999999988764 22 7888999853 4555
Q ss_pred hc--CeEEEeeCCeE
Q 044030 246 LF--HNLCLLSAGQT 258 (449)
Q Consensus 246 ~~--D~v~~l~~G~i 258 (449)
.+ ++++.+++|++
T Consensus 345 ~~~~~~i~~v~~G~i 359 (361)
T PRK00064 345 LLENAKIFHVEQGKI 359 (361)
T ss_pred hhccCcEEEEeCCEE
Confidence 54 47899999986
|
|
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.5e-15 Score=161.54 Aligned_cols=129 Identities=24% Similarity=0.318 Sum_probs=90.7
Q ss_pred eeeEEEecC-eEEEEECCCCCcHHHHHHHHHcCC-CCCCCceeEEEECCEecccccCcEEEEcCCCC-CCCCCCHHHHHH
Q 044030 61 DLTGYAKPG-HLLAIMGPSGSGKTTLLDALAGRL-GSDTRQTGKILINGHKKALAYGTSAYVTQDDT-LITTLTVKEAVY 137 (449)
Q Consensus 61 ~vs~~i~~G-e~~~IlGpnGaGKSTLL~~l~G~~-~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~-l~~~lTv~e~l~ 137 (449)
.+|+.+.++ ++++|.||||+|||||||+|+|.. .+ ..| .+||.... .++ +.+.+.
T Consensus 313 p~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~a---q~G----------------~~Vpa~~~~~~~---~~d~i~ 370 (771)
T TIGR01069 313 PFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMF---QSG----------------IPIPANEHSEIP---YFEEIF 370 (771)
T ss_pred eceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHH---HhC----------------CCccCCcccccc---chhhee
Confidence 378888887 999999999999999999999872 22 122 13333321 111 111110
Q ss_pred HHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHH-H
Q 044030 138 YSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYV-M 216 (449)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i-~ 216 (449)
. .++...........+|+|+++++.|++++ .+|+++|+|||++|+|+.....+ .
T Consensus 371 --~----------------------~i~~~~si~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~ 425 (771)
T TIGR01069 371 --A----------------------DIGDEQSIEQNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAI 425 (771)
T ss_pred --e----------------------ecChHhHHhhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHH
Confidence 0 00111112233567999999999998876 79999999999999999999998 5
Q ss_pred HHHHHHHhhcCCCeEEEEEecCC
Q 044030 217 SRIAKLGQRDGIGRTIIASIHQP 239 (449)
Q Consensus 217 ~~l~~l~~~~g~g~tii~~tH~~ 239 (449)
.++..+.+ .|. ++|++||+.
T Consensus 426 aiLe~l~~-~g~--~viitTH~~ 445 (771)
T TIGR01069 426 SILEYLLK-QNA--QVLITTHYK 445 (771)
T ss_pred HHHHHHHh-cCC--EEEEECChH
Confidence 67888874 455 999999995
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.8e-14 Score=132.24 Aligned_cols=131 Identities=24% Similarity=0.239 Sum_probs=85.7
Q ss_pred eeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHc--CCCCCCCceeEEEECCEecccccCcEEEEcCCCCCC-CCCCHHH
Q 044030 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAG--RLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLI-TTLTVKE 134 (449)
Q Consensus 58 iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G--~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~-~~lTv~e 134 (449)
+=+|+++.=..+.+++|.||||+|||||||.|+. .+ + ..|...... ...++|..|....+ ...++.+
T Consensus 18 vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a---~~G~~v~a~------~~~~~~~d~i~~~l~~~~si~~ 87 (213)
T cd03281 18 VPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-A---HIGSFVPAD------SATIGLVDKIFTRMSSRESVSS 87 (213)
T ss_pred EcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-H---hCCCeeEcC------CcEEeeeeeeeeeeCCccChhh
Confidence 3444544322237999999999999999999984 22 1 245443321 12366766653221 1112221
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCC--hHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Q 044030 135 AVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLS--GGQKRRVSISIEILTRPKLLFLDEPTSGLDSAAS 212 (449)
Q Consensus 135 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LS--gGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~ 212 (449)
+ +| .-|.||++++++++.+|+++++|||++|+|+...
T Consensus 88 ~-----------------------------------------~S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~ 126 (213)
T cd03281 88 G-----------------------------------------QSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDG 126 (213)
T ss_pred c-----------------------------------------cchHHHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHH
Confidence 1 12 3467899999999999999999999999999765
Q ss_pred HHH-HHHHHHHHhhcCCCeEEEEEecCC
Q 044030 213 YYV-MSRIAKLGQRDGIGRTIIASIHQP 239 (449)
Q Consensus 213 ~~i-~~~l~~l~~~~g~g~tii~~tH~~ 239 (449)
..+ ...++++.+....+.++|++||++
T Consensus 127 ~~~~~ail~~l~~~~~~~~~vli~TH~~ 154 (213)
T cd03281 127 AGLLIATIEHLLKRGPECPRVIVSTHFH 154 (213)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEEcChH
Confidence 444 568888875311013899999996
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.2e-13 Score=115.95 Aligned_cols=72 Identities=17% Similarity=0.095 Sum_probs=59.1
Q ss_pred cceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----ccCcEEEEcCCCCCCCCC
Q 044030 56 SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-----AYGTSAYVTQDDTLITTL 130 (449)
Q Consensus 56 ~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-----~~~~i~yv~Q~~~l~~~l 130 (449)
+.+|+++++++++|++++|+||||||||||++++. +|++.++|.+... ..+.++|++|+ +++ -
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~---------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~-~ 69 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI---------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLE-I 69 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh---------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cch-h
Confidence 46899999999999999999999999999999985 5889999987521 22446777777 444 4
Q ss_pred CHHHHHHHH
Q 044030 131 TVKEAVYYS 139 (449)
Q Consensus 131 Tv~e~l~~~ 139 (449)
|++|||.+.
T Consensus 70 ti~~Ni~~~ 78 (107)
T cd00820 70 RLRLNIFLI 78 (107)
T ss_pred hHHhhceee
Confidence 999999874
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.3e-12 Score=124.55 Aligned_cols=139 Identities=18% Similarity=0.220 Sum_probs=88.7
Q ss_pred cceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcC-CCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHH
Q 044030 56 SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGR-LGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKE 134 (449)
Q Consensus 56 ~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~-~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e 134 (449)
..+.+|+++.+.+|++++|+||||+||||++++|++. +.+ ..|....... . .++|..| ++..+...|
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la---~~G~~v~a~~-~-----~~~~~~~---i~~~~~~~d 85 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMA---QIGSFVPASS-A-----TLSIFDS---VLTRMGASD 85 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHH---hCCCEEEcCc-e-----EEeccce---EEEEecCcc
Confidence 4689999999999999999999999999999999993 333 3565433211 1 1222221 111111111
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCC--hHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Q 044030 135 AVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLS--GGQKRRVSISIEILTRPKLLFLDEPTSGLDSAAS 212 (449)
Q Consensus 135 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LS--gGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~ 212 (449)
++. .++| ..|-+|++-+..-+.+|+++|+|||.+|.|+...
T Consensus 86 ~~~-------------------------------------~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~ 128 (222)
T cd03287 86 SIQ-------------------------------------HGMSTFMVELSETSHILSNCTSRSLVILDELGRGTSTHDG 128 (222)
T ss_pred ccc-------------------------------------cccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCCChhhH
Confidence 110 0111 1233344444445568999999999999997777
Q ss_pred HHH-HHHHHHHHhhcCCCeEEEEEecCCcHHHHhhc
Q 044030 213 YYV-MSRIAKLGQRDGIGRTIIASIHQPSSEVFQLF 247 (449)
Q Consensus 213 ~~i-~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~ 247 (449)
..+ ..+++.+.+..+. ++|++||++ ++..+.
T Consensus 129 ~~i~~~il~~l~~~~~~--~~i~~TH~~--~l~~~~ 160 (222)
T cd03287 129 IAIAYATLHYLLEEKKC--LVLFVTHYP--SLGEIL 160 (222)
T ss_pred HHHHHHHHHHHHhccCC--eEEEEcccH--HHHHHH
Confidence 764 5677777754355 999999996 344544
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.3e-13 Score=134.61 Aligned_cols=174 Identities=24% Similarity=0.343 Sum_probs=121.3
Q ss_pred EecCeEEEEECCCCCcHHHHHHHHHcCCCCCCC--ceeEEEEC------CEecccccCc-------EEEEcCCCCCCCC-
Q 044030 66 AKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTR--QTGKILIN------GHKKALAYGT-------SAYVTQDDTLITT- 129 (449)
Q Consensus 66 i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~--~~G~I~~~------g~~~~~~~~~-------i~yv~Q~~~l~~~- 129 (449)
-+||++.+++|.||-||||-|++++|.++|... ..+-.+-+ |-.+..-+.+ .-.=||.-..+|.
T Consensus 97 prpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~ 176 (592)
T KOG0063|consen 97 PRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRA 176 (592)
T ss_pred CCcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHH
Confidence 358999999999999999999999999987411 01111111 1000000000 0000111111110
Q ss_pred --CCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 044030 130 --LTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGL 207 (449)
Q Consensus 130 --lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgL 207 (449)
.+|.+++ .....+....++++.+.|....++-+..|||||-||.+||++.+++.++.++|||.+-|
T Consensus 177 ~k~~v~~~l------------~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYL 244 (592)
T KOG0063|consen 177 VKGTVGSLL------------DRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYL 244 (592)
T ss_pred HHHHHHHHH------------HHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccc
Confidence 1222222 11222335677888899999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeC
Q 044030 208 DSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSA 255 (449)
Q Consensus 208 D~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~ 255 (449)
|...+..-...|+.+... .. =||++.||.+ -+.-+.|-+.+|..
T Consensus 245 DVKQRLkaA~~IRsl~~p-~~--YiIVVEHDLs-VLDylSDFiCcLYG 288 (592)
T KOG0063|consen 245 DVKQRLKAAITIRSLINP-DR--YIIVVEHDLS-VLDYLSDFICCLYG 288 (592)
T ss_pred hHHHhhhHHHHHHHhhCC-CC--eEEEEEeech-HHHhhhcceeEEec
Confidence 999999999999999843 33 8999999974 55567888888873
|
|
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.5e-13 Score=127.46 Aligned_cols=46 Identities=13% Similarity=0.213 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHHh
Q 044030 179 GGQKRRVSISIEILTRPKLLFLDEPT-----SGLDSAASYYVMSRIAKLGQ 224 (449)
Q Consensus 179 gGerqRv~ia~aL~~~P~llllDEPt-----sgLD~~~~~~i~~~l~~l~~ 224 (449)
|-|++++.||++++.+|+++++|||| +|||+..+..+.+.++++++
T Consensus 155 ~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 155 NFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred CHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 33999999999999999999999999 99999999999999999973
|
|
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.5e-12 Score=131.08 Aligned_cols=175 Identities=19% Similarity=0.227 Sum_probs=111.0
Q ss_pred ccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec---c------c----ccCcEEEEc
Q 044030 55 SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKK---A------L----AYGTSAYVT 121 (449)
Q Consensus 55 ~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~---~------~----~~~~i~yv~ 121 (449)
+..+++++ +.+.+|+.++|+|+||+|||||+++|+|..+++ .|.|.+.|+.. . . ..+.+.++.
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~---~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~ 220 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSAD---LNVIALIGERGREVREFIERDLGPEGLKRSIVVVA 220 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEE
Confidence 35689999 999999999999999999999999999998764 79999976532 1 1 124577887
Q ss_pred CCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCCh-HHHHHHHHHHHHHhCCCEEEE
Q 044030 122 QDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSG-GQKRRVSISIEILTRPKLLFL 200 (449)
Q Consensus 122 Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSg-GerqRv~ia~aL~~~P~llll 200 (449)
+.+.-.. .+....+.+ -.+.+.+..-|-+-.. ...+++- -|-+ |++. +.+
T Consensus 221 ~~~~~~~---~r~~~~~~a--------------~~iAEyfr~~g~~Vll--~~Dsltr~A~A~-----rEis-----l~~ 271 (438)
T PRK07721 221 TSDQPAL---MRIKGAYTA--------------TAIAEYFRDQGLNVML--MMDSVTRVAMAQ-----REIG-----LAV 271 (438)
T ss_pred CCCCCHH---HHHHHHHHH--------------HHHHHHHHHCCCcEEE--EEeChHHHHHHH-----HHHH-----Hhc
Confidence 6443210 011111110 0111222211211000 0011110 0001 1110 112
Q ss_pred eCC--CCCCCHHHHHHHHHHHHHHHhhcCCCe-----EEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhh
Q 044030 201 DEP--TSGLDSAASYYVMSRIAKLGQRDGIGR-----TIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATA 266 (449)
Q Consensus 201 DEP--tsgLD~~~~~~i~~~l~~l~~~~g~g~-----tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~ 266 (449)
.|| |+|+|+.....+.+++.++.+. +.|. ||++.+||.. ..+||++..+.+|+++..++..+
T Consensus 272 ge~P~~~G~dp~~~~~l~~ller~~~~-~~GsIT~~~TVlv~~hdm~---e~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 272 GEPPTTKGYTPSVFAILPKLLERTGTN-ASGSITAFYTVLVDGDDMN---EPIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred CCCCccccCCHHHHHHHHHHHHHhcCC-CCCCeeeEEEEEEECCCCC---chhhhhEEEecCEEEEEeccHHH
Confidence 454 7899999999999999999742 2264 9999999975 38899999999999999998754
|
|
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.5e-13 Score=149.55 Aligned_cols=150 Identities=18% Similarity=0.243 Sum_probs=96.8
Q ss_pred eeEEEe-cCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHHHHHHH
Q 044030 62 LTGYAK-PGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSA 140 (449)
Q Consensus 62 vs~~i~-~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~ 140 (449)
.++.+. .+.++.|.|||++||||+||.++...-- ...| .|||-... ..+++.+++
T Consensus 319 ndi~l~~~~~~~iITGpN~gGKTt~lktigl~~~m--aq~G----------------~~vpa~~~--~~i~~~~~i---- 374 (782)
T PRK00409 319 KDISLGFDKTVLVITGPNTGGKTVTLKTLGLAALM--AKSG----------------LPIPANEP--SEIPVFKEI---- 374 (782)
T ss_pred ceeEECCCceEEEEECCCCCCcHHHHHHHHHHHHH--HHhC----------------CCcccCCC--ccccccceE----
Confidence 344444 4578999999999999999999753200 0011 13433310 011122222
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-HH
Q 044030 141 QLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMS-RI 219 (449)
Q Consensus 141 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~-~l 219 (449)
+..+|-..........+|+||++++.|++++ .+|+++|+|||++|+|+.....+.. ++
T Consensus 375 --------------------~~~ig~~~si~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~ail 433 (782)
T PRK00409 375 --------------------FADIGDEQSIEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISIL 433 (782)
T ss_pred --------------------EEecCCccchhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHH
Confidence 1112222333455678999999999999988 8999999999999999999988865 56
Q ss_pred HHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEe
Q 044030 220 AKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYF 261 (449)
Q Consensus 220 ~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~ 261 (449)
..+.+ .|. ++|++||++ ......+|+..++ ++.+.+.
T Consensus 434 e~l~~-~~~--~vIitTH~~-el~~~~~~~~~v~-~~~~~~d 470 (782)
T PRK00409 434 EYLRK-RGA--KIIATTHYK-ELKALMYNREGVE-NASVEFD 470 (782)
T ss_pred HHHHH-CCC--EEEEECChH-HHHHHHhcCCCeE-EEEEEEe
Confidence 77764 455 999999995 3334445544443 4555553
|
|
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.3e-12 Score=140.85 Aligned_cols=77 Identities=18% Similarity=0.322 Sum_probs=69.0
Q ss_pred CCCChHHHHHHHHHHHHHhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeE
Q 044030 175 RRLSGGQKRRVSISIEILTR----PKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNL 250 (449)
Q Consensus 175 ~~LSgGerqRv~ia~aL~~~----P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v 250 (449)
+.+||||+||++||++++.. |+++||||||+|||+.++..+.+.|+++++ +. +||++||+| .+...||++
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~--~~--~vi~iTH~~--~~~~~ad~~ 512 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE--RH--QVLCVTHLP--QVAAHADAH 512 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc--CC--EEEEEEChH--HHHHhcCeE
Confidence 46899999999999999986 699999999999999999999999999973 44 999999997 345789999
Q ss_pred EEeeCCe
Q 044030 251 CLLSAGQ 257 (449)
Q Consensus 251 ~~l~~G~ 257 (449)
++|++|.
T Consensus 513 ~~l~k~~ 519 (563)
T TIGR00634 513 FKVEKEG 519 (563)
T ss_pred EEEEEcc
Confidence 9999864
|
All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair. |
| >TIGR00618 sbcc exonuclease SbcC | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.4e-12 Score=148.14 Aligned_cols=88 Identities=18% Similarity=0.166 Sum_probs=78.0
Q ss_pred CCchhhCccCCCCChHHHHHHHHHHHHHh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEE
Q 044030 165 GLQDAMNTRIRRLSGGQKRRVSISIEILT----------RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIA 234 (449)
Q Consensus 165 gL~~~~~~~~~~LSgGerqRv~ia~aL~~----------~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~ 234 (449)
++....+++++.|||||++||+||+||+. +|++||+||||+|||+.+...+++.|..++. .|+ +|++
T Consensus 939 ~~~~~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~-~g~--~i~i 1015 (1042)
T TIGR00618 939 DAYTGSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIRE-GSK--MIGI 1015 (1042)
T ss_pred eCCCCCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHh-CCC--EEEE
Confidence 34456677889999999999999999986 7999999999999999999999999999985 555 9999
Q ss_pred EecCCcHHHHhhcCeEEEeeCC
Q 044030 235 SIHQPSSEVFQLFHNLCLLSAG 256 (449)
Q Consensus 235 ~tH~~~~~i~~~~D~v~~l~~G 256 (449)
+||++ .....++|+|.|++.|
T Consensus 1016 isH~~-~~~~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1016 ISHVP-EFRERIPHRILVKKTN 1036 (1042)
T ss_pred EeCcH-HHHHhhCCEEEEEECC
Confidence 99996 5788999999999754
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.3e-12 Score=139.03 Aligned_cols=79 Identities=22% Similarity=0.320 Sum_probs=68.9
Q ss_pred cCCCCChHHHHHHHHHHHHH----------hCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcH
Q 044030 173 RIRRLSGGQKRRVSISIEIL----------TRPKLLFLDEPT-SGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSS 241 (449)
Q Consensus 173 ~~~~LSgGerqRv~ia~aL~----------~~P~llllDEPt-sgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~ 241 (449)
.+..||||||||++||++|+ .+|+++|||||| ++||+.....+.+.|+.+ + |. |||++||++
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~-~--~~--~iiiish~~-- 537 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL-K--DT--NVFVISHKD-- 537 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC-C--CC--eEEEEECch--
Confidence 45789999999999999987 599999999998 789999999999999988 2 34 999999996
Q ss_pred HHHhhcCeEEEeeC-CeE
Q 044030 242 EVFQLFHNLCLLSA-GQT 258 (449)
Q Consensus 242 ~i~~~~D~v~~l~~-G~i 258 (449)
.....||++++|.+ |+.
T Consensus 538 ~~~~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 538 HDPQKFDRHLKMEKVGRF 555 (562)
T ss_pred hchhhhhcEEEEEEECCe
Confidence 35678999999986 554
|
|
| >cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.3e-12 Score=122.52 Aligned_cols=137 Identities=19% Similarity=0.195 Sum_probs=87.3
Q ss_pred ccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHH
Q 044030 55 SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKE 134 (449)
Q Consensus 55 ~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e 134 (449)
...+-+|+++..++|++++|.||||+||||+++++++..-.. ..| -........+++ -+.++..+...|
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la--~~G------~~vpa~~~~i~~---~~~i~~~~~~~d 84 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMA--QMG------MDVPAKSMRLSL---VDRIFTRIGARD 84 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHH--HcC------CccCccccEecc---ccEEEEecCccc
Confidence 356889999999999999999999999999999999863210 011 111000001111 122222222333
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHH
Q 044030 135 AVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYY 214 (449)
Q Consensus 135 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~ 214 (449)
++..+. + .+ ..|.++++-....+.+|+++++|||++|+|+.....
T Consensus 85 ~~~~~~--------S--------------------------tF-~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~ 129 (218)
T cd03286 85 DIMKGE--------S--------------------------TF-MVELSETANILRHATPDSLVILDELGRGTSTHDGYA 129 (218)
T ss_pred ccccCc--------c--------------------------hH-HHHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHH
Confidence 331110 0 00 023344444444457899999999999999999998
Q ss_pred HHHH-HHHHHhhcCCCeEEEEEecCC
Q 044030 215 VMSR-IAKLGQRDGIGRTIIASIHQP 239 (449)
Q Consensus 215 i~~~-l~~l~~~~g~g~tii~~tH~~ 239 (449)
+... ++.+.+..+. ++|++||++
T Consensus 130 la~ail~~L~~~~~~--~~i~~TH~~ 153 (218)
T cd03286 130 IAHAVLEYLVKKVKC--LTLFSTHYH 153 (218)
T ss_pred HHHHHHHHHHHhcCC--cEEEEeccH
Confidence 8888 7777754366 999999996
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK10869 recombination and repair protein; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.4e-12 Score=136.93 Aligned_cols=76 Identities=24% Similarity=0.408 Sum_probs=68.5
Q ss_pred CCChHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEE
Q 044030 176 RLSGGQKRRVSISIEILT----RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLC 251 (449)
Q Consensus 176 ~LSgGerqRv~ia~aL~~----~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~ 251 (449)
.+||||+||++||++++. +|+++++|||++|||..++..+.+.|+++++ +. +||++||+| .+..+||+.+
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~--~~--qvi~iTH~~--~~~~~ad~~~ 503 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE--ST--QVMCVTHLP--QVAGCGHQHF 503 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc--CC--EEEEEecCH--HHHHhCCEEE
Confidence 589999999999999997 5899999999999999999999999999973 34 999999997 3668999999
Q ss_pred EeeCCe
Q 044030 252 LLSAGQ 257 (449)
Q Consensus 252 ~l~~G~ 257 (449)
++.++.
T Consensus 504 ~v~k~~ 509 (553)
T PRK10869 504 FVSKET 509 (553)
T ss_pred EEeccc
Confidence 998753
|
|
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.9e-12 Score=120.34 Aligned_cols=178 Identities=16% Similarity=0.187 Sum_probs=101.7
Q ss_pred EEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE--CCEe-ccc--cc---CcEEEEcCCCCCCCCCCH---
Q 044030 64 GYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILI--NGHK-KAL--AY---GTSAYVTQDDTLITTLTV--- 132 (449)
Q Consensus 64 ~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~--~g~~-~~~--~~---~~i~yv~Q~~~l~~~lTv--- 132 (449)
+.+.+|+.++|+||+|+|||||++.|++..... .....+++ -+.+ .+. .. ..+-.+.+-+. .+...+
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~-~~~~~~~~~ 88 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDE-PPERHVQVA 88 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCC-CHHHHHHHH
Confidence 468899999999999999999999999977542 11223222 2221 110 00 11222222222 111000
Q ss_pred HHHHHHHHhccC-CCCC--CHHHHHHHHHHHHHHcCCchhhCccCCCCChHH--------HHHHHHHHHHHhCCCEEEEe
Q 044030 133 KEAVYYSAQLQL-PDTM--PKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQ--------KRRVSISIEILTRPKLLFLD 201 (449)
Q Consensus 133 ~e~l~~~~~~~~-~~~~--~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGe--------rqRv~ia~aL~~~P~llllD 201 (449)
+.-+..+..++. +... --++. .+..+..+.+ .......+|||+ +||+++|+++..+++|.+|
T Consensus 89 ~~~~~~a~~~~~~G~~vll~iDei-~r~a~a~~ev-----~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l- 161 (249)
T cd01128 89 EMVLEKAKRLVEHGKDVVILLDSI-TRLARAYNTV-----VPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII- 161 (249)
T ss_pred HHHHHHHHHHHHCCCCEEEEEECH-HHhhhhhhhc-----cccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe-
Confidence 111111111100 0000 00000 0111111211 222235689999 9999999999999999999
Q ss_pred CCCCCCCHHHHHH-HHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeE
Q 044030 202 EPTSGLDSAASYY-VMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQT 258 (449)
Q Consensus 202 EPtsgLD~~~~~~-i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~i 258 (449)
||+.+|+.+... ++ +..+.. .+ .|.|+.+|+.. ....+|.|.+|+.|.+
T Consensus 162 -~T~~~d~~~~~~~~i--~~~~~~-~~--~~~ivls~~la--~~~~~paI~vl~s~sr 211 (249)
T cd01128 162 -ATALVDTGSRMDDVI--FEEFKG-TG--NMELVLDRRLA--ERRIFPAIDILKSGTR 211 (249)
T ss_pred -eeheecCCCcccchH--HHHHhc-CC--CcEEEEchHHh--hCCCCCeEEEcCCCCc
Confidence 999999654443 44 455442 33 39999999963 5678999999999987
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.6e-11 Score=111.64 Aligned_cols=145 Identities=19% Similarity=0.161 Sum_probs=98.7
Q ss_pred EEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHH
Q 044030 72 LAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKS 151 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~ 151 (449)
+.|.||+|+|||||.-.++-.... +| ..+.|+.= +.|..+.+.....+ +.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~----------~g-------~~v~~~s~------e~~~~~~~~~~~~~----g~~~- 53 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA----------RG-------EPGLYVTL------EESPEELIENAESL----GWDL- 53 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH----------CC-------CcEEEEEC------CCCHHHHHHHHHHc----CCCh-
Confidence 679999999999988655431100 12 12334431 23455554443333 1111
Q ss_pred HHHHHHHHHHHHcCCchhhCccCCCCChHHHH------HHHHHHHHHhCCCEEEEeCCCCCCC---HHHHHHHHHHHHHH
Q 044030 152 DKKERAEVTIREMGLQDAMNTRIRRLSGGQKR------RVSISIEILTRPKLLFLDEPTSGLD---SAASYYVMSRIAKL 222 (449)
Q Consensus 152 ~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerq------Rv~ia~aL~~~P~llllDEPtsgLD---~~~~~~i~~~l~~l 222 (449)
+ .+...|+....+..+..+|+|++| +.....+...+|+++++|||++.+| ......+.+.++.+
T Consensus 54 ------~-~l~~~g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l 126 (187)
T cd01124 54 ------E-RLEDEGLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFAL 126 (187)
T ss_pred ------H-HHHhcCCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHH
Confidence 1 123345555677888899999998 5555555677999999999999999 88888889999998
Q ss_pred HhhcCCCeEEEEEecCCcH--------HHHhhcCeEEEee
Q 044030 223 GQRDGIGRTIIASIHQPSS--------EVFQLFHNLCLLS 254 (449)
Q Consensus 223 ~~~~g~g~tii~~tH~~~~--------~i~~~~D~v~~l~ 254 (449)
++. |. |+|+++|+... .+..+||.++.|+
T Consensus 127 ~~~-g~--tvi~v~~~~~~~~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 127 KRF-GV--TTLLTSEQSGLEGTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred HHC-CC--EEEEEeccccCCCcccCcCceeEeeeEEEEEE
Confidence 754 54 99999998542 2677899999887
|
A related protein is found in archaea. |
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.4e-11 Score=116.55 Aligned_cols=150 Identities=19% Similarity=0.165 Sum_probs=90.6
Q ss_pred EEecCeEEEEECCCCCcHHHH-HHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHHHHHHHhcc
Q 044030 65 YAKPGHLLAIMGPSGSGKTTL-LDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQ 143 (449)
Q Consensus 65 ~i~~Ge~~~IlGpnGaGKSTL-L~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~ 143 (449)
-+++|++++|.|||||||||| ++++++..+++ ..+.|+.. ..|..+.+.....+.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g------------------~~~~yi~~------e~~~~~~~~~~~~~g 75 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNG------------------YSVSYVST------QLTTTEFIKQMMSLG 75 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCC------------------CcEEEEeC------CCCHHHHHHHHHHhC
Confidence 389999999999999999999 78998865431 11345442 224555554443321
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHH----hCCCEEEEeCCCCCC----CHHHHHHH
Q 044030 144 LPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEIL----TRPKLLFLDEPTSGL----DSAASYYV 215 (449)
Q Consensus 144 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~----~~P~llllDEPtsgL----D~~~~~~i 215 (449)
... ++.... +.-...+-. ..+|+++.++-.+.+.+- .+|+++++||||+++ |+.....+
T Consensus 76 ----~~~-------~~~~~~-~~l~~~~~~-~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l 142 (230)
T PRK08533 76 ----YDI-------NKKLIS-GKLLYIPVY-PLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDL 142 (230)
T ss_pred ----Cch-------HHHhhc-CcEEEEEec-ccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHH
Confidence 111 111110 100011111 236777655544444332 369999999999999 88888899
Q ss_pred HHHHHHHHhhcCCCeEEEEEecCCcH------HHHhhcCeEEEee
Q 044030 216 MSRIAKLGQRDGIGRTIIASIHQPSS------EVFQLFHNLCLLS 254 (449)
Q Consensus 216 ~~~l~~l~~~~g~g~tii~~tH~~~~------~i~~~~D~v~~l~ 254 (449)
++.++.+++. |. |+++++|.... .+..++|-|+.|+
T Consensus 143 ~~~l~~l~~~-g~--tvi~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 143 MAFFKRISSL-NK--VIILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred HHHHHHHHhC-CC--EEEEEecccccccccceeEEEeeeEEEEEE
Confidence 9999999754 44 77776554210 1234567777776
|
|
| >PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.6e-12 Score=120.38 Aligned_cols=62 Identities=27% Similarity=0.488 Sum_probs=52.3
Q ss_pred CCCChHHHHHHHHHHHHHhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCC
Q 044030 175 RRLSGGQKRRVSISIEILTRP---KLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQP 239 (449)
Q Consensus 175 ~~LSgGerqRv~ia~aL~~~P---~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~ 239 (449)
..+|.|++|.+.++..+...+ .++++|||-++|+|..+..+++.|+..++ .+. -||++||.|
T Consensus 235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~-~~~--QviitTHSp 299 (303)
T PF13304_consen 235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSK-KNI--QVIITTHSP 299 (303)
T ss_dssp S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGG-GSS--EEEEEES-G
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCc-cCC--EEEEeCccc
Confidence 567999999999999888877 89999999999999999999999998875 344 899999997
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1e-10 Score=125.80 Aligned_cols=137 Identities=20% Similarity=0.332 Sum_probs=105.6
Q ss_pred CCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHH------HHHcCCchh-hCccCCCCChHHHHHHHHHHHHHhCC--CE
Q 044030 127 ITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVT------IREMGLQDA-MNTRIRRLSGGQKRRVSISIEILTRP--KL 197 (449)
Q Consensus 127 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~------l~~lgL~~~-~~~~~~~LSgGerqRv~ia~aL~~~P--~l 197 (449)
+..|++.+.+.|...+.+.. ......+..+.++ |-.+||... +++....|||||.||+-+|..+=.+= =+
T Consensus 426 ~~~msi~~~~~f~~~l~l~~-~~~~ia~~ilkei~~RL~fL~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVl 504 (935)
T COG0178 426 ISEMSIADALEFFENLKLSE-KEKKIAEPILKEIKERLGFLVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVL 504 (935)
T ss_pred HhhccHHHHHHHHHhCCCch-hhHHHHHHHHHHHHHHHHHHHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeE
Confidence 45678888888877665321 1111122222333 334588753 68888999999999999999997653 47
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEe------eCCeEEEecChhhHHH
Q 044030 198 LFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLL------SAGQTVYFGPATAANE 269 (449)
Q Consensus 198 lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l------~~G~iv~~g~~~~~~~ 269 (449)
++||||+-||-+..-..+++.|++|.+ .|- |+|++.||+ ++...+|+|+=| +.|+|++.|++++++.
T Consensus 505 YVLDEPSIGLHqrDn~rLi~tL~~LRD-lGN--TviVVEHDe--dti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~ 577 (935)
T COG0178 505 YVLDEPSIGLHQRDNERLIETLKRLRD-LGN--TVIVVEHDE--DTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLA 577 (935)
T ss_pred EEecCCccCCChhhHHHHHHHHHHHHh-cCC--eEEEEecCH--HHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHh
Confidence 899999999999999999999999984 555 999999994 688899999987 4689999999998864
|
|
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.8e-12 Score=115.99 Aligned_cols=83 Identities=11% Similarity=0.161 Sum_probs=65.1
Q ss_pred CccCCCCChHHHHHHHHHHHHHhCCCEEEEeCC--CCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcC
Q 044030 171 NTRIRRLSGGQKRRVSISIEILTRPKLLFLDEP--TSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFH 248 (449)
Q Consensus 171 ~~~~~~LSgGerqRv~ia~aL~~~P~llllDEP--tsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D 248 (449)
.+.+..+||+++-+..+++..+.+|+++++||| +.++|. .+.+.+.++. +.+. ++|+++|+. .+...+|
T Consensus 73 ~~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~----~~~~~l~~~~-~~~~--~~i~v~h~~--~~~~~~~ 143 (174)
T PRK13695 73 GKYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSP----KFVKAVEEVL-DSEK--PVIATLHRR--SVHPFVQ 143 (174)
T ss_pred eeEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhH----HHHHHHHHHH-hCCC--eEEEEECch--hhHHHHH
Confidence 344567999999999999999999999999995 445543 3456666665 3444 999999983 5678899
Q ss_pred eEEEeeCCeEEEec
Q 044030 249 NLCLLSAGQTVYFG 262 (449)
Q Consensus 249 ~v~~l~~G~iv~~g 262 (449)
++..+.+|++...-
T Consensus 144 ~i~~~~~~~i~~~~ 157 (174)
T PRK13695 144 EIKSRPGGRVYELT 157 (174)
T ss_pred HHhccCCcEEEEEc
Confidence 99999999987653
|
|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.1e-11 Score=136.89 Aligned_cols=80 Identities=23% Similarity=0.274 Sum_probs=68.9
Q ss_pred CccCCCCChHHHHH------HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHH
Q 044030 171 NTRIRRLSGGQKRR------VSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVF 244 (449)
Q Consensus 171 ~~~~~~LSgGerqR------v~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~ 244 (449)
+.++..|||||+++ +++|++++.+|++++|||||+|||+..+..+.+.|..++.. +. +||++||++ ++.
T Consensus 783 ~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~-~~--~iiiith~~--~~~ 857 (880)
T PRK03918 783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRK-IP--QVIIVSHDE--ELK 857 (880)
T ss_pred cCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhc-CC--EEEEEECCH--HHH
Confidence 45678999999994 55556788999999999999999999999999999998743 44 999999996 467
Q ss_pred hhcCeEEEeeC
Q 044030 245 QLFHNLCLLSA 255 (449)
Q Consensus 245 ~~~D~v~~l~~ 255 (449)
..||++++|..
T Consensus 858 ~~~d~~~~l~~ 868 (880)
T PRK03918 858 DAADYVIRVSL 868 (880)
T ss_pred HhCCeEEEEEe
Confidence 89999999983
|
|
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.2e-10 Score=132.32 Aligned_cols=81 Identities=23% Similarity=0.230 Sum_probs=68.1
Q ss_pred ccCCCCChHHHHHHHH------HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHh
Q 044030 172 TRIRRLSGGQKRRVSI------SIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQ 245 (449)
Q Consensus 172 ~~~~~LSgGerqRv~i------a~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~ 245 (449)
..+..|||||++|++| |++++.+|++++|||||+|||+.....+.++|+...+..+...+||++||++ +...
T Consensus 797 ~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~--~~~~ 874 (895)
T PRK01156 797 EGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHR--ELLS 874 (895)
T ss_pred CccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECch--HHHH
Confidence 4578999999999976 4889999999999999999999999999999986543332013899999996 3568
Q ss_pred hcCeEEEee
Q 044030 246 LFHNLCLLS 254 (449)
Q Consensus 246 ~~D~v~~l~ 254 (449)
.||+++.+.
T Consensus 875 ~~d~ii~~~ 883 (895)
T PRK01156 875 VADVAYEVK 883 (895)
T ss_pred hcCeEEEEE
Confidence 999999997
|
|
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.4e-11 Score=117.66 Aligned_cols=141 Identities=22% Similarity=0.210 Sum_probs=95.1
Q ss_pred eeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe-cccc-cCcEEEEcCCCC-CCCCCCHHHHHHH
Q 044030 62 LTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHK-KALA-YGTSAYVTQDDT-LITTLTVKEAVYY 138 (449)
Q Consensus 62 vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~-~~~~-~~~i~yv~Q~~~-l~~~lTv~e~l~~ 138 (449)
+++.++.|+.++|.||+|||||||+++|++.+++. .|.+.+.+.. .... ...+.++.+... -....|..
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~---~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~----- 208 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKD---ERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPK----- 208 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCcc---ccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHH-----
Confidence 55778899999999999999999999999998764 5777775422 1111 112222222100 00011111
Q ss_pred HHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 044030 139 SAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSR 218 (449)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~ 218 (449)
-.+..+|-.+|+++++|||.+ .++++.
T Consensus 209 ----------------------------------------------~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~ 235 (308)
T TIGR02788 209 ----------------------------------------------DLLQSCLRMRPDRIILGELRG-------DEAFDF 235 (308)
T ss_pred ----------------------------------------------HHHHHHhcCCCCeEEEeccCC-------HHHHHH
Confidence 124456778999999999996 345667
Q ss_pred HHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 219 IAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 219 l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
++.+. . | +.+++.++|..+ +....||+..|..|++...|.+.+..
T Consensus 236 l~a~~-~-g-~~~~i~T~Ha~~--~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 236 IRAVN-T-G-HPGSITTLHAGS--PEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHh-c-C-CCeEEEEEeCCC--HHHHHHHHHHHhhccccccCCCHHHH
Confidence 77765 3 3 226799999964 67779999999999998888776654
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >PRK10246 exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.2e-10 Score=133.97 Aligned_cols=82 Identities=26% Similarity=0.250 Sum_probs=70.6
Q ss_pred hCccCCCCChHHHHHHHHHHHHHh--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcH
Q 044030 170 MNTRIRRLSGGQKRRVSISIEILT--------RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSS 241 (449)
Q Consensus 170 ~~~~~~~LSgGerqRv~ia~aL~~--------~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~ 241 (449)
.++++..|||||+++++||+||+. +|++||+||||++||+.+...+++.|..+++ .|+ ||+++||.. .
T Consensus 943 ~~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~-~g~--~v~iisH~~-~ 1018 (1047)
T PRK10246 943 AVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNA-SGK--TIGVISHVE-A 1018 (1047)
T ss_pred CCCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCC--EEEEEecHH-H
Confidence 457889999999999999999996 8999999999999999999999999999984 455 999999974 4
Q ss_pred HHHhhcCeEEEeeC
Q 044030 242 EVFQLFHNLCLLSA 255 (449)
Q Consensus 242 ~i~~~~D~v~~l~~ 255 (449)
...++-.+|.|-..
T Consensus 1019 l~~~i~~qi~V~k~ 1032 (1047)
T PRK10246 1019 MKERIPVQIKVKKI 1032 (1047)
T ss_pred HHHhccceEEEEEC
Confidence 45556667777654
|
|
| >PRK13830 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.8e-10 Score=124.04 Aligned_cols=69 Identities=16% Similarity=0.127 Sum_probs=59.1
Q ss_pred HhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHH---------hhcCeEEEeeCCeEEEe
Q 044030 192 LTRPKLLFLDEPTSGL-DSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVF---------QLFHNLCLLSAGQTVYF 261 (449)
Q Consensus 192 ~~~P~llllDEPtsgL-D~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~---------~~~D~v~~l~~G~iv~~ 261 (449)
..+|+++++|||+.+| |+..+..+.+.++.+++ .|. +++++||++. ++. +.||.+++|.+|++...
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK-~~~--~vil~Tq~~~-d~~~s~~a~~i~~~~~t~i~L~n~~a~~~ 725 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRK-ANC--AVVLATQSIS-DAERSGIIDVLKESCPTKICLPNGAAREP 725 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHH-cCC--EEEEEeCCHH-HHhcCchHHHHHhcCCeEEECCCcccccc
Confidence 5799999999999999 79999999999999975 454 9999999975 443 68999999999998776
Q ss_pred cCh
Q 044030 262 GPA 264 (449)
Q Consensus 262 g~~ 264 (449)
|..
T Consensus 726 ~~~ 728 (818)
T PRK13830 726 GTR 728 (818)
T ss_pred chH
Confidence 644
|
|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.7e-10 Score=133.90 Aligned_cols=72 Identities=22% Similarity=0.230 Sum_probs=62.8
Q ss_pred cCCCCChHHHH------HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh----hcCCCeEEEEEecCCcHH
Q 044030 173 RIRRLSGGQKR------RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQ----RDGIGRTIIASIHQPSSE 242 (449)
Q Consensus 173 ~~~~LSgGerq------Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~----~~g~g~tii~~tH~~~~~ 242 (449)
..+.||||||| |++||++++.+|++|+|||||+|||+.+...+.+.|..+.. ..| .+||++||++ ..
T Consensus 1196 ~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~--~~viiitHd~-~~ 1272 (1311)
T TIGR00606 1196 MRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRN--FQLLVITHDE-DF 1272 (1311)
T ss_pred CCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccC--CeEEEEecCH-HH
Confidence 44789999999 99999999999999999999999999999999999988742 124 4999999996 56
Q ss_pred HHhhc
Q 044030 243 VFQLF 247 (449)
Q Consensus 243 i~~~~ 247 (449)
+..+|
T Consensus 1273 ~~~~~ 1277 (1311)
T TIGR00606 1273 VELLG 1277 (1311)
T ss_pred HHHHh
Confidence 77775
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.2e-10 Score=102.01 Aligned_cols=63 Identities=17% Similarity=0.238 Sum_probs=46.0
Q ss_pred CCChHHHHHHHHHHHHHhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcH
Q 044030 176 RLSGGQKRRVSISIEILTRPKLLFLDEPTS----------GLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSS 241 (449)
Q Consensus 176 ~LSgGerqRv~ia~aL~~~P~llllDEPts----------gLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~ 241 (449)
..+.++.++...+.+...+|+++++|||++ +.|......+.+++.... +.+. |+|+++|.+..
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~--~vv~~~~~~~~ 139 (165)
T cd01120 67 DPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERAR-KGGV--TVIFTLQVPSG 139 (165)
T ss_pred CCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh-cCCc--eEEEEEecCCc
Confidence 445566667888889999999999999995 445555566655555553 4555 99999998753
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >PRK06793 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.7e-10 Score=116.02 Aligned_cols=168 Identities=17% Similarity=0.164 Sum_probs=115.1
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcE
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTS 117 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i 117 (449)
++-++++.. +. .+..+++++ +.+.+|+.++|+|+||+|||||+++|+|..+++ .|.|.+.|+..
T Consensus 131 ~~r~~i~~~-l~----TGiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~---~gvI~~iGerg------- 194 (432)
T PRK06793 131 FEREEITDV-FE----TGIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKAD---INVISLVGERG------- 194 (432)
T ss_pred hheechhhc-cC----CCCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCC---eEEEEeCCCCc-------
Confidence 455556544 21 235688885 999999999999999999999999999988663 67776666421
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch-hhCccCCCCChHHHHHHHHHHHHH----
Q 044030 118 AYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD-AMNTRIRRLSGGQKRRVSISIEIL---- 192 (449)
Q Consensus 118 ~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LSgGerqRv~ia~aL~---- 192 (449)
.+|.|.+...... -++.. ..=....+-|.|+|+|+..+.+.+
T Consensus 195 ------------~ev~e~~~~~l~~---------------------~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyf 241 (432)
T PRK06793 195 ------------REVKDFIRKELGE---------------------EGMRKSVVVVATSDESHLMQLRAAKLATSIAEYF 241 (432)
T ss_pred ------------ccHHHHHHHHhhh---------------------cccceeEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 3666665422110 11110 011233678999999999988888
Q ss_pred ---hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecCh
Q 044030 193 ---TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264 (449)
Q Consensus 193 ---~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~ 264 (449)
.++-++++|+||+..|+. .+|-..+.+... .| .+..+.+|. . .+ ++|.-...+|.+...+..
T Consensus 242 r~~G~~VLlilDslTr~a~A~--reisl~~~e~p~-~G--~~~~~~s~l-~-~L---~ERag~~~~GSiT~~~tv 306 (432)
T PRK06793 242 RDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPI-GG--KTLLMESYM-K-KL---LERSGKTQKGSITGIYTV 306 (432)
T ss_pred HHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCC-CC--eeeeeeccc-h-hH---HHHhccCCCcceEEEEEE
Confidence 789999999999999996 555555555542 24 488888884 2 33 444444578888776543
|
|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.9e-10 Score=133.57 Aligned_cols=80 Identities=19% Similarity=0.277 Sum_probs=69.3
Q ss_pred hhCccCCCCChHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHH
Q 044030 169 AMNTRIRRLSGGQKRRVSISIEIL----TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVF 244 (449)
Q Consensus 169 ~~~~~~~~LSgGerqRv~ia~aL~----~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~ 244 (449)
..+..+..||||||+|++||++++ ..|+++||||||+|||+.+...+.++|+.+++ +. +||++||++. ..
T Consensus 1082 ~~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~--~~--~~i~~sh~~~--~~ 1155 (1179)
T TIGR02168 1082 KKNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK--NT--QFIVITHNKG--TM 1155 (1179)
T ss_pred CccccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc--CC--EEEEEEcChh--HH
Confidence 346677899999999999999985 56799999999999999999999999999874 23 8999999974 45
Q ss_pred hhcCeEEEee
Q 044030 245 QLFHNLCLLS 254 (449)
Q Consensus 245 ~~~D~v~~l~ 254 (449)
..||+++.+.
T Consensus 1156 ~~~d~~~~~~ 1165 (1179)
T TIGR02168 1156 EVADQLYGVT 1165 (1179)
T ss_pred HHhhhHeeee
Confidence 7899998765
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. |
| >COG3910 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.9e-09 Score=95.54 Aligned_cols=79 Identities=18% Similarity=0.331 Sum_probs=56.8
Q ss_pred ccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhh-cCeE
Q 044030 172 TRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQL-FHNL 250 (449)
Q Consensus 172 ~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~-~D~v 250 (449)
......|-||-=---+.+. .++.-+++||||-++|.|.-+..++..|+++++. |. -+||.||.|. +..+ --.|
T Consensus 125 ~sLh~~SHGEsf~~i~~~r-f~~~GiYiLDEPEa~LSp~RQlella~l~~la~s-Ga--Q~IiATHSPi--LlAiP~A~I 198 (233)
T COG3910 125 RSLHHMSHGESFLAIFHNR-FNGQGIYILDEPEAALSPSRQLELLAILRDLADS-GA--QIIIATHSPI--LLAIPGAEI 198 (233)
T ss_pred cchhhhccchHHHHHHHHH-hccCceEEecCccccCCHHHHHHHHHHHHHHHhc-CC--eEEEEecChh--heeCCCcEE
Confidence 3345678888654333333 4567899999999999999999999999999954 44 8999999983 3322 2344
Q ss_pred EEeeCC
Q 044030 251 CLLSAG 256 (449)
Q Consensus 251 ~~l~~G 256 (449)
+-++.+
T Consensus 199 ~~~~~~ 204 (233)
T COG3910 199 YEISES 204 (233)
T ss_pred EEEecC
Confidence 445544
|
|
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.2e-08 Score=97.98 Aligned_cols=164 Identities=18% Similarity=0.178 Sum_probs=97.0
Q ss_pred cceeeee-eEEEecCeEEEEECCCCCcHHHHHHHHH-cCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHH
Q 044030 56 SSILEDL-TGYAKPGHLLAIMGPSGSGKTTLLDALA-GRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVK 133 (449)
Q Consensus 56 ~~iL~~v-s~~i~~Ge~~~IlGpnGaGKSTLL~~l~-G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~ 133 (449)
..-|+.+ .+=+++|.++.|.|++|||||||...++ +... +| ..+.|+..+. +..
T Consensus 11 i~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-----------~g-------~~~~y~~~e~------~~~ 66 (234)
T PRK06067 11 NEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALK-----------QG-------KKVYVITTEN------TSK 66 (234)
T ss_pred CHHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHh-----------CC-------CEEEEEEcCC------CHH
Confidence 3445554 5679999999999999999999998875 2111 11 1244554421 233
Q ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh--CCCEEEEeCCCCC---CC
Q 044030 134 EAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT--RPKLLFLDEPTSG---LD 208 (449)
Q Consensus 134 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~--~P~llllDEPtsg---LD 208 (449)
+.+.-...+. ....+. .... .+.+-+..-......|.++++.+..+..++. +|+++++||||+. .|
T Consensus 67 ~~~~~~~~~g----~~~~~~--~~~g---~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~ 137 (234)
T PRK06067 67 SYLKQMESVK----IDISDF--FLWG---YLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAE 137 (234)
T ss_pred HHHHHHHHCC----CChhHH--HhCC---CceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCC
Confidence 3332221111 110000 0000 0111111111223457788999999999998 9999999999965 44
Q ss_pred HHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcH------HHHhhcCeEEEeeC
Q 044030 209 SAASYYVMSRIAKLGQRDGIGRTIIASIHQPSS------EVFQLFHNLCLLSA 255 (449)
Q Consensus 209 ~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~------~i~~~~D~v~~l~~ 255 (449)
......+++.++.+++ .|. |+++++|+... .+..++|-++.|+.
T Consensus 138 ~~~~~~~l~~l~~l~~-~g~--tvllt~~~~~~~~~~~~~~~~l~DgvI~L~~ 187 (234)
T PRK06067 138 EDDILNFLTEAKNLVD-LGK--TILITLHPYAFSEELLSRIRSICDVYLKLRA 187 (234)
T ss_pred HHHHHHHHHHHHHHHh-CCC--EEEEEecCCcCCHHHHHHHHhheEEEEEEEe
Confidence 5555555566766664 444 99999998542 14567777777763
|
|
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.7e-09 Score=113.48 Aligned_cols=151 Identities=23% Similarity=0.296 Sum_probs=96.1
Q ss_pred ceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHHH
Q 044030 57 SILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAV 136 (449)
Q Consensus 57 ~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l 136 (449)
.++++.+..+++|++++++||||+||||++..|++.+... .|. +.++++.+|. ...++.|+|
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~---~G~------------~kV~LI~~Dt---~RigA~EQL 305 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMR---HGA------------SKVALLTTDS---YRIGGHEQL 305 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHh---cCC------------CeEEEEeCCc---cchhHHHHH
Confidence 3566777788899999999999999999999999976431 231 2467888876 346899999
Q ss_pred HHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHH-HHHHHHHHHhCC-----CEEEEeCCCCCCCHH
Q 044030 137 YYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKR-RVSISIEILTRP-----KLLFLDEPTSGLDSA 210 (449)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerq-Rv~ia~aL~~~P-----~llllDEPtsgLD~~ 210 (449)
.+.+.... .+........+......++.+.....+.+...+++. .+.-..+++.++ .+|+||.++.+
T Consensus 306 r~~AeilG---Vpv~~~~~~~Dl~~aL~~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~---- 378 (484)
T PRK06995 306 RIYGKILG---VPVHAVKDAADLRLALSELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG---- 378 (484)
T ss_pred HHHHHHhC---CCeeccCCchhHHHHHHhccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH----
Confidence 98776542 221111222334445567766656666665444443 234455555555 68999999887
Q ss_pred HHHHHHHHHHHHHhhcCCCeEEEEEec
Q 044030 211 ASYYVMSRIAKLGQRDGIGRTIIASIH 237 (449)
Q Consensus 211 ~~~~i~~~l~~l~~~~g~g~tii~~tH 237 (449)
..+.+.++.+.. .+. +-++.|+
T Consensus 379 --~~l~~i~~~f~~-~~~--~g~IlTK 400 (484)
T PRK06995 379 --DTLNEVVQAYRG-PGL--AGCILTK 400 (484)
T ss_pred --HHHHHHHHHhcc-CCC--CEEEEeC
Confidence 334445555542 333 4344444
|
|
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.1e-09 Score=99.63 Aligned_cols=119 Identities=18% Similarity=0.339 Sum_probs=72.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccccc-CcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAY-GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMP 149 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~-~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~ 149 (449)
+++|.||+||||||++++|++.+.+. ..|.|.....+..... ...+++.|...
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~--~~~~i~t~e~~~E~~~~~~~~~i~q~~v------------------------ 56 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKN--KTHHILTIEDPIEFVHESKRSLINQREV------------------------ 56 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhc--CCcEEEEEcCCccccccCccceeeeccc------------------------
Confidence 78999999999999999999877542 2466655443322110 01111111100
Q ss_pred HHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCC
Q 044030 150 KSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIG 229 (449)
Q Consensus 150 ~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g 229 (449)
|.. ...++ =+++++|..+|+++++|||. |......++ +.+ ..|.
T Consensus 57 ---------------g~~------~~~~~------~~i~~aLr~~pd~ii~gEir---d~e~~~~~l----~~a-~~G~- 100 (198)
T cd01131 57 ---------------GLD------TLSFE------NALKAALRQDPDVILVGEMR---DLETIRLAL----TAA-ETGH- 100 (198)
T ss_pred ---------------CCC------ccCHH------HHHHHHhcCCcCEEEEcCCC---CHHHHHHHH----HHH-HcCC-
Confidence 000 00111 13778899999999999996 555433333 344 3454
Q ss_pred eEEEEEecCCcHHHHhhcCeEEEee
Q 044030 230 RTIIASIHQPSSEVFQLFHNLCLLS 254 (449)
Q Consensus 230 ~tii~~tH~~~~~i~~~~D~v~~l~ 254 (449)
.++.++|.++ +...+||++.+.
T Consensus 101 -~v~~t~Ha~~--~~~~~~Rl~~l~ 122 (198)
T cd01131 101 -LVMSTLHTNS--AAKTIDRIIDVF 122 (198)
T ss_pred -EEEEEecCCc--HHHHHhHHHhhc
Confidence 9999999974 457789987774
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.1e-09 Score=127.53 Aligned_cols=79 Identities=16% Similarity=0.148 Sum_probs=69.0
Q ss_pred CccCCCCChHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhh
Q 044030 171 NTRIRRLSGGQKRRVSISIEILT----RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQL 246 (449)
Q Consensus 171 ~~~~~~LSgGerqRv~ia~aL~~----~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~ 246 (449)
.+.+..||||||++++||++|+. .|+++|||||+++||+..+..+.++|+.+++ +. .+|++||++ .+...
T Consensus 1069 ~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~--~~--~~i~~t~~~--~~~~~ 1142 (1164)
T TIGR02169 1069 VQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG--EA--QFIVVSLRS--PMIEY 1142 (1164)
T ss_pred CCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC--CC--eEEEEECcH--HHHHh
Confidence 34567999999999999999985 6799999999999999999999999999863 23 899999996 46789
Q ss_pred cCeEEEeeC
Q 044030 247 FHNLCLLSA 255 (449)
Q Consensus 247 ~D~v~~l~~ 255 (449)
||+++.+..
T Consensus 1143 ~d~~~~~~~ 1151 (1164)
T TIGR02169 1143 ADRAIGVTM 1151 (1164)
T ss_pred cceeEeEEE
Confidence 999988764
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. |
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.5e-09 Score=101.31 Aligned_cols=136 Identities=26% Similarity=0.433 Sum_probs=84.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC-EecccccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCC
Q 044030 69 GHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING-HKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDT 147 (449)
Q Consensus 69 Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g-~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~ 147 (449)
|.+..|+||+|+|||||.-.++=-. .+|.=++.+ ... .....+.|+.-++
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~v-----a~G~~~~g~~~~~-~~~~~Vlyi~~Ed----------------------- 51 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAM-----ALGKNLFGGGLKV-TEPGRVVYLSAED----------------------- 51 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHH-----hcCccccCCcccc-CCCceEEEEECCC-----------------------
Confidence 6788999999999999987776322 123211211 111 0112344544221
Q ss_pred CCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHH----------------HHHhCCCEEEEeCCCC------
Q 044030 148 MPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISI----------------EILTRPKLLFLDEPTS------ 205 (449)
Q Consensus 148 ~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~----------------aL~~~P~llllDEPts------ 205 (449)
+..+..+++..+...+++.+..++... .+|+.|++.+++ ....+|+++++| |++
T Consensus 52 -~~~~i~~Rl~~i~~~~~~~~~~~rl~~--~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~~~~~ 127 (239)
T cd01125 52 -PREEIHRRLEAILQHLEPDDAGDRLFI--DSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSFHGVS 127 (239)
T ss_pred -CHHHHHHHHHHHHhhcCCcCcccceEE--eccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHhCCCC
Confidence 122334455555555554433333221 245555554443 335799999999 775
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCC
Q 044030 206 GLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQP 239 (449)
Q Consensus 206 gLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~ 239 (449)
.+|+.....+++.|++++++.|. +||+++|..
T Consensus 128 ~~d~~~~~~~~~~L~~~a~~~g~--avl~v~H~~ 159 (239)
T cd01125 128 ENDNGAMDAVIKALRRIAAQTGA--AILLVHHVR 159 (239)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCC--EEEEEeccC
Confidence 47999999999999999977766 999999985
|
RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent. |
| >TIGR03238 dnd_assoc_3 dnd system-associated protein 3 | Back alignment and domain information |
|---|
Probab=98.92 E-value=8.2e-10 Score=114.36 Aligned_cols=50 Identities=22% Similarity=0.400 Sum_probs=44.4
Q ss_pred cceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCcee-EEEECCEec
Q 044030 56 SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTG-KILINGHKK 110 (449)
Q Consensus 56 ~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G-~I~~~g~~~ 110 (449)
..+|++||+++++||+++|+|||||||||||+ +|+..|. +| +|.++|.+.
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~---sGg~I~ldg~~~ 69 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFS---EGYEFFLDATHS 69 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCC---CCCEEEECCEEC
Confidence 46899999999999999999999999999999 6776653 55 899999875
|
cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A. |
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.4e-09 Score=120.34 Aligned_cols=78 Identities=26% Similarity=0.377 Sum_probs=66.0
Q ss_pred CCCCChHHHH------HHHHHHHHHhC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcH
Q 044030 174 IRRLSGGQKR------RVSISIEILTR-----P-KLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSS 241 (449)
Q Consensus 174 ~~~LSgGerq------Rv~ia~aL~~~-----P-~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~ 241 (449)
+..||||||+ |++++++++.+ | +++|+||||++||+.....+.++|+.+++. |. .+||++||++.
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~-~~-~qviiish~~~- 855 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRL-GV-EQIVVVSHDDE- 855 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhc-CC-CeEEEEECChH-
Confidence 5799999999 89999998864 3 679999999999999999999999999743 31 27999999963
Q ss_pred HHHhhcCeEEEeeC
Q 044030 242 EVFQLFHNLCLLSA 255 (449)
Q Consensus 242 ~i~~~~D~v~~l~~ 255 (449)
....||+++.|..
T Consensus 856 -~~~~ad~~~~~~~ 868 (880)
T PRK02224 856 -LVGAADDLVRVEK 868 (880)
T ss_pred -HHHhcCeeEEeec
Confidence 4568999999964
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.7e-07 Score=80.00 Aligned_cols=119 Identities=30% Similarity=0.449 Sum_probs=76.7
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDT 147 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~ 147 (449)
++..+.|.||+|+||||+++.|+..+... ..+-+.++...... . +..+..
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~--~~~~~~~~~~~~~~----------------~-~~~~~~----------- 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPP--GGGVIYIDGEDILE----------------E-VLDQLL----------- 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCC--CCCEEEECCEEccc----------------c-CHHHHH-----------
Confidence 36789999999999999999999987542 11344444432110 0 000000
Q ss_pred CCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-----HHHHH
Q 044030 148 MPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMS-----RIAKL 222 (449)
Q Consensus 148 ~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~-----~l~~l 222 (449)
............+++..+..+..+--.+|.++++||+..-.+......... .....
T Consensus 51 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~ 111 (148)
T smart00382 51 -------------------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLL 111 (148)
T ss_pred -------------------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHH
Confidence 111122234567777777777777777799999999999999998887765 22232
Q ss_pred HhhcCCCeEEEEEec
Q 044030 223 GQRDGIGRTIIASIH 237 (449)
Q Consensus 223 ~~~~g~g~tii~~tH 237 (449)
....+. .+|+++|
T Consensus 112 ~~~~~~--~~i~~~~ 124 (148)
T smart00382 112 KSEKNL--TVILTTN 124 (148)
T ss_pred HhcCCC--EEEEEeC
Confidence 223333 8899988
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.9e-09 Score=114.32 Aligned_cols=166 Identities=16% Similarity=0.195 Sum_probs=101.5
Q ss_pred ceeeee-eEEEecCeEEEEECCCCCcHHHHHHHH--HcCCCCCCCceeEEEECCEecc--c--ccCcEEEEcCCCCCCCC
Q 044030 57 SILEDL-TGYAKPGHLLAIMGPSGSGKTTLLDAL--AGRLGSDTRQTGKILINGHKKA--L--AYGTSAYVTQDDTLITT 129 (449)
Q Consensus 57 ~iL~~v-s~~i~~Ge~~~IlGpnGaGKSTLL~~l--~G~~~~~~~~~G~I~~~g~~~~--~--~~~~i~yv~Q~~~l~~~ 129 (449)
.-|+.+ .+=+++|..+.|.||+|||||||...+ .|....+ +.-+++...... . ..+..||-.++..--
T Consensus 8 ~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~g---e~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~-- 82 (484)
T TIGR02655 8 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFD---EPGVFVTFEESPQDIIKNARSFGWDLQKLVDE-- 82 (484)
T ss_pred hhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC---CCEEEEEEecCHHHHHHHHHHcCCCHHHHhhc--
Confidence 346664 567999999999999999999998766 3443221 233444332210 0 011223222210000
Q ss_pred CCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHH--HHHHhCCCEEEEeCCCCCC
Q 044030 130 LTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSIS--IEILTRPKLLFLDEPTSGL 207 (449)
Q Consensus 130 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia--~aL~~~P~llllDEPtsgL 207 (449)
+++.+ . ..... .....+++.+++.+..++....+|+|++|||.|+ .+|...|+..
T Consensus 83 ----g~l~~---~----~~~~~---~~~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~--------- 139 (484)
T TIGR02655 83 ----GKLFI---L----DASPD---PEGQDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQYDAV--------- 139 (484)
T ss_pred ----CceEE---E----ecCch---hccccccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhcCch---------
Confidence 00000 0 00000 0111244566777788888899999999999999 6666666543
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHH-------H-HhhcCeEEEee
Q 044030 208 DSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSE-------V-FQLFHNLCLLS 254 (449)
Q Consensus 208 D~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~-------i-~~~~D~v~~l~ 254 (449)
...+..++++++.+++ .|. |+|+++|++... + ..+||.|+.|+
T Consensus 140 -~~~r~~l~~Li~~L~~-~g~--TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 140 -SVVRREIFRLVARLKQ-IGV--TTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred -HHHHHHHHHHHHHHHH-CCC--EEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 5677889999998874 455 999999986320 2 55889999987
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.9e-09 Score=97.39 Aligned_cols=113 Identities=17% Similarity=0.258 Sum_probs=70.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCH
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPK 150 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~ 150 (449)
+++|.||||||||||.++|++.+. .|.+ .++++++.. ..++..+......... ..+.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~-----~~~~--------------~v~~~D~~~-~~~~~~~~~~~~~~~~---~~~~ 57 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG-----NPKV--------------VIISQDSYY-KDLSHEELEERKNNNY---DHPD 57 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC-----CCCe--------------EEEEecccc-cccccccHHHhccCCC---CCCC
Confidence 589999999999999999999762 2222 233333222 1122222221111000 1111
Q ss_pred HHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 044030 151 SDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDS 209 (449)
Q Consensus 151 ~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~ 209 (449)
....+...+.+..+......+.+..+.|.|++++..+ .+.+|+++|+|.|+.+.++
T Consensus 58 ~~~~~~~~~~l~~l~~~~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 58 AFDFDLLISHLQDLKNGKSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred cccHHHHHHHHHHHHCCCCEeccccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 1112334556676766666677888999999876655 5788999999999999986
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >PRK07196 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.76 E-value=8.7e-09 Score=106.76 Aligned_cols=175 Identities=18% Similarity=0.191 Sum_probs=110.5
Q ss_pred ccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecc-----------cccCcEEEEcCC
Q 044030 55 SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKA-----------LAYGTSAYVTQD 123 (449)
Q Consensus 55 ~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~-----------~~~~~i~yv~Q~ 123 (449)
+..+++++ +.+.+|+.++|+||||||||||+++|+|...++...-|.|-.+|.+.. ..+..++|++|+
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d 220 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPAD 220 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCC
Confidence 46799999 999999999999999999999999999988764222355545543321 112358999999
Q ss_pred CCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHH-HHHHHHHHhCCCEEEEeC
Q 044030 124 DTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRR-VSISIEILTRPKLLFLDE 202 (449)
Q Consensus 124 ~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR-v~ia~aL~~~P~llllDE 202 (449)
...+..+++.+++.+.+..+...+. .|--+++ .+...+ +-+| +++ .+-|
T Consensus 221 ~s~~~rl~a~e~a~~iAEyfr~~g~-------~Vll~~D--sltr~a----------~A~REisl-----------~~ge 270 (434)
T PRK07196 221 ESPLMRIKATELCHAIATYYRDKGH-------DVLLLVD--SLTRYA----------MAQREIAL-----------SLGE 270 (434)
T ss_pred CChhhhHHHHHHHHHHHHHhhhccC-------CEEEeec--chhHHH----------hhhhHHHH-----------hcCC
Confidence 9999999999999887765421110 0000000 011110 0011 111 1235
Q ss_pred C--CCCCCHHHHHHHHHHHHHHHhhc--CCCeEEEEEecCCcHHH-HhhcCeEEEeeCCeEEEe
Q 044030 203 P--TSGLDSAASYYVMSRIAKLGQRD--GIGRTIIASIHQPSSEV-FQLFHNLCLLSAGQTVYF 261 (449)
Q Consensus 203 P--tsgLD~~~~~~i~~~l~~l~~~~--g~g~tii~~tH~~~~~i-~~~~D~v~~l~~G~iv~~ 261 (449)
| +.|-.+..-..+-+++.+..+-. | ..|.+.+..-+.+++ ..++|.+.-+-+|+|+..
T Consensus 271 ~P~~~Gyp~svf~~l~~l~ERag~~~~~G-SIT~~~tVl~~~dD~~dpi~d~~~~ilDG~ivLs 333 (434)
T PRK07196 271 PPATKGYPPSAFSIIPRLAESAGNSSGNG-TMTAIYTVLAEGDDQQDPIVDCARAVLDGHIVLS 333 (434)
T ss_pred CCcccCcCHHHHHHhHHHHHHhhcCCCCE-EeeeeeEEEccCCCCCCchhHhhhhhcceEEEEc
Confidence 4 34777777777777777764322 3 357676665543332 346788888889999874
|
|
| >TIGR01026 fliI_yscN ATPase FliI/YscN family | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.6e-07 Score=98.09 Aligned_cols=174 Identities=18% Similarity=0.209 Sum_probs=105.1
Q ss_pred ccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc------------c-cCcEEEEc
Q 044030 55 SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL------------A-YGTSAYVT 121 (449)
Q Consensus 55 ~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~------------~-~~~i~yv~ 121 (449)
+..+++++ +.+.+|+.++|+|+||+|||||+++|+|...++ .|.+...|..... . .+.+.++.
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~---~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~ 225 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEAD---VNVIALIGERGREVREFIEHDLGEEGLKRSVVVVA 225 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCC---EEEEEEEeecchHHHHHHHHHhcccccceEEEEEE
Confidence 46799999 999999999999999999999999999988664 6666665543110 0 11222332
Q ss_pred CCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCCh-HHHHHHHHHHHHHhCCCEEEE
Q 044030 122 QDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSG-GQKRRVSISIEILTRPKLLFL 200 (449)
Q Consensus 122 Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSg-GerqRv~ia~aL~~~P~llll 200 (449)
+.+. ++.+-. .+ ....-.+.+.+...|-+-.. .+.+|+- -|-+| ++. +.+
T Consensus 226 ~~d~-----~p~~r~--~~----------~~~a~t~AE~frd~G~~Vll--~~DslTr~A~A~R-----Eis-----l~~ 276 (440)
T TIGR01026 226 TSDQ-----SPLLRL--KG----------AYVATAIAEYFRDQGKDVLL--LMDSVTRFAMAQR-----EIG-----LAA 276 (440)
T ss_pred CCCC-----CHHHHH--HH----------HHHHHHHHHHHHHCCCCEEE--EEeChHHHHHHHH-----HHH-----Hhc
Confidence 2221 111111 00 00011122233222321000 0022221 11111 111 234
Q ss_pred eCC--CCCCCHHHHHHHHHHHHHHHhhcCCCe-------EEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 201 DEP--TSGLDSAASYYVMSRIAKLGQRDGIGR-------TIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 201 DEP--tsgLD~~~~~~i~~~l~~l~~~~g~g~-------tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
.|| +.|+|+.....+.+++.+.... +. ||++.+||.. ..++|++..+.+|+++......+.
T Consensus 277 ge~P~~~Gypp~~~~~l~~l~ERag~~---~~GSIT~i~tVl~~~~d~~---dpi~d~~~~i~dG~ivLsr~la~~ 346 (440)
T TIGR01026 277 GEPPATKGYTPSVFSTLPRLLERAGAS---GKGSITAFYTVLVEGDDMN---EPIADSVRGILDGHIVLSRALAQR 346 (440)
T ss_pred CCCCcccccChhHHHHHHHHHHHhccC---CCCeeeEEEEEEccCcCCC---cchhhhhccccceEEEEecchhhC
Confidence 675 5599999999999999998743 34 7788888863 468999999999999999876543
|
This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. |
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.9e-08 Score=92.10 Aligned_cols=82 Identities=24% Similarity=0.203 Sum_probs=60.2
Q ss_pred eeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec-ccc-cCcEEEEcCCC--CCCCCCCHH
Q 044030 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKK-ALA-YGTSAYVTQDD--TLITTLTVK 133 (449)
Q Consensus 58 iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~-~~~-~~~i~yv~Q~~--~l~~~lTv~ 133 (449)
..+=+.+.+++|+.++|+||||||||||+++|+|+++++ .|.|.+.+... ... ...++++.|.. ...+..++.
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~---~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPD---ERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMA 90 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHH
Confidence 444456678999999999999999999999999998764 79999987532 111 23455655543 346678888
Q ss_pred HHHHHHHhc
Q 044030 134 EAVYYSAQL 142 (449)
Q Consensus 134 e~l~~~~~~ 142 (449)
+.+..+.+.
T Consensus 91 ~~l~~~lR~ 99 (186)
T cd01130 91 DLLRSALRM 99 (186)
T ss_pred HHHHHHhcc
Confidence 888776553
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >PRK05399 DNA mismatch repair protein MutS; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.2e-08 Score=110.48 Aligned_cols=139 Identities=20% Similarity=0.206 Sum_probs=86.7
Q ss_pred cceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHH
Q 044030 56 SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEA 135 (449)
Q Consensus 56 ~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~ 135 (449)
..|-+|+++. +.+.++.|.|||++||||+||.++-..-- ...| +|||-+..-+ .+.+.
T Consensus 595 ~~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~il--Aq~G----------------~~VPa~~a~i---~~~d~ 652 (854)
T PRK05399 595 PFVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLL--AQIG----------------SFVPAESARI---GIVDR 652 (854)
T ss_pred ceEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHH--HhcC----------------CceeccceEe---cccCe
Confidence 3466777777 67889999999999999999998753200 0011 2333322111 11111
Q ss_pred HHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh--CCCEEEEeCC---CCCCCHH
Q 044030 136 VYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT--RPKLLFLDEP---TSGLDSA 210 (449)
Q Consensus 136 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~--~P~llllDEP---tsgLD~~ 210 (449)
+ ...+|- .|....++|.=+.....++..|-. +++++|+||| |+.+|..
T Consensus 653 I------------------------~triga---~d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~ 705 (854)
T PRK05399 653 I------------------------FTRIGA---SDDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGL 705 (854)
T ss_pred e------------------------eeccCc---ccccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhH
Confidence 1 111111 223345667666666666666544 8999999999 8888844
Q ss_pred HHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCe
Q 044030 211 ASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHN 249 (449)
Q Consensus 211 ~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~ 249 (449)
+ ..+.+++.+.+..+. ++|++||.. ++..++++
T Consensus 706 a--ia~aile~l~~~~~~--~~l~aTH~~--el~~l~~~ 738 (854)
T PRK05399 706 S--IAWAVAEYLHDKIGA--KTLFATHYH--ELTELEEK 738 (854)
T ss_pred H--HHHHHHHHHHhcCCc--eEEEEechH--HHHHHhhh
Confidence 3 455666777644345 899999993 67788775
|
|
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.2e-07 Score=96.37 Aligned_cols=124 Identities=19% Similarity=0.364 Sum_probs=76.6
Q ss_pred EecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccccc-CcEEEEcCCCCCCCCCCHHHHHHHHHhccC
Q 044030 66 AKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAY-GTSAYVTQDDTLITTLTVKEAVYYSAQLQL 144 (449)
Q Consensus 66 i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~-~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~ 144 (449)
..++.++.|.||+||||||+|++|.+.+... ..|.|.....+..... ...+.+.|..
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~--~~~~i~tiEdp~E~~~~~~~~~i~q~e-------------------- 176 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKN--AAGHIITIEDPIEYVHRNKRSLINQRE-------------------- 176 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcC--CCCEEEEEcCChhhhccCccceEEccc--------------------
Confidence 3578999999999999999999999876431 2466655443322110 0001111100
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 044030 145 PDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQ 224 (449)
Q Consensus 145 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~ 224 (449)
.|.. ..+ -.-+++.+|-.+|+++++||+. |+.++...++ .+
T Consensus 177 -------------------vg~~--------~~~----~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa- 217 (343)
T TIGR01420 177 -------------------VGLD--------TLS----FANALRAALREDPDVILIGEMR---DLETVELALT----AA- 217 (343)
T ss_pred -------------------cCCC--------CcC----HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HH-
Confidence 0000 000 1123556888999999999997 8888765444 33
Q ss_pred hcCCCeEEEEEecCCcHHHHhhcCeEEEee
Q 044030 225 RDGIGRTIIASIHQPSSEVFQLFHNLCLLS 254 (449)
Q Consensus 225 ~~g~g~tii~~tH~~~~~i~~~~D~v~~l~ 254 (449)
..|. +|+.++|-.+ .....+|++-|-
T Consensus 218 ~tGh--~v~~T~Ha~~--~~~~~~Rl~~~~ 243 (343)
T TIGR01420 218 ETGH--LVFGTLHTNS--AAQTIERIIDVF 243 (343)
T ss_pred HcCC--cEEEEEcCCC--HHHHHHHHHHhc
Confidence 3455 9999999864 456778887653
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >PRK14079 recF recombination protein F; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.5e-08 Score=99.08 Aligned_cols=77 Identities=22% Similarity=0.238 Sum_probs=64.0
Q ss_pred CCCChHHHHHHHHHHHHH---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHh
Q 044030 175 RRLSGGQKRRVSISIEIL---------TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQ 245 (449)
Q Consensus 175 ~~LSgGerqRv~ia~aL~---------~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~ 245 (449)
.-+|+||+|++.+|..|+ .+|++++||||+++||...+..+++.|.... . ++|.+|+.+ .
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~----q--~~it~t~~~-----~ 330 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP----Q--AIVAGTEAP-----P 330 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC----c--EEEEcCCCC-----C
Confidence 468999999999999999 8999999999999999999999998886532 2 566555543 5
Q ss_pred hcCeEEEeeCCeEEEec
Q 044030 246 LFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 246 ~~D~v~~l~~G~iv~~g 262 (449)
.+|+++.+.+|++.-..
T Consensus 331 ~~~~~~~~~~~~~~~~~ 347 (349)
T PRK14079 331 GAALTLRIEAGVFTPEA 347 (349)
T ss_pred CCceEEEEeccEecCCC
Confidence 79999999998875433
|
|
| >TIGR00611 recf recF protein | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.8e-08 Score=99.41 Aligned_cols=60 Identities=20% Similarity=0.334 Sum_probs=54.6
Q ss_pred CCCChHHHHHHHHHHHHHh---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCc
Q 044030 175 RRLSGGQKRRVSISIEILT---------RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPS 240 (449)
Q Consensus 175 ~~LSgGerqRv~ia~aL~~---------~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~ 240 (449)
..+|.||+|++.||.+|+. +|+|+|||||+++||+..+..+++.|... |. +|++++|++.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~----~~--qv~it~~~~~ 342 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL----GV--QVFVTAISLD 342 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc----CC--EEEEEecChh
Confidence 4799999999999999999 99999999999999999999999999753 44 8999999863
|
All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK13891 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=7.7e-07 Score=100.56 Aligned_cols=69 Identities=14% Similarity=0.173 Sum_probs=52.8
Q ss_pred HHHHHHhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHh--hcCeEEEeeCCeEE
Q 044030 187 ISIEILTRPKLLFLDEPTSGL-DSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQ--LFHNLCLLSAGQTV 259 (449)
Q Consensus 187 ia~aL~~~P~llllDEPtsgL-D~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~--~~D~v~~l~~G~iv 259 (449)
|++++..+|+++++|||+.+| |+..+..+.+.++.+++ .|. +++++||++. ++.. .++.++-....++.
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK-~g~--~vil~TQs~~-d~~~s~i~~~ilen~~t~I~ 751 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRK-ANC--LVLMATQSLS-DAANSGILDVIVESTATKIF 751 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHh-cCC--EEEEEeCCHH-HHhhCchHHHHHHcCCccee
Confidence 567788899999999999999 79999999999999985 454 9999999975 4544 33434333444444
|
|
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.5e-08 Score=93.52 Aligned_cols=34 Identities=32% Similarity=0.478 Sum_probs=28.0
Q ss_pred ceeeee-eEEEecCeEEEEECCCCCcHHHHHHHHH
Q 044030 57 SILEDL-TGYAKPGHLLAIMGPSGSGKTTLLDALA 90 (449)
Q Consensus 57 ~iL~~v-s~~i~~Ge~~~IlGpnGaGKSTLL~~l~ 90 (449)
.-|+.+ .+=+++|++++|.||+|||||||...++
T Consensus 7 ~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~ 41 (229)
T TIGR03881 7 EGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFA 41 (229)
T ss_pred hhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHH
Confidence 345553 5679999999999999999999988655
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.3e-07 Score=107.80 Aligned_cols=80 Identities=28% Similarity=0.328 Sum_probs=69.6
Q ss_pred ccCCCCChHHHHHHHHHHHHHh------C--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHH
Q 044030 172 TRIRRLSGGQKRRVSISIEILT------R--PKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEV 243 (449)
Q Consensus 172 ~~~~~LSgGerqRv~ia~aL~~------~--P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i 243 (449)
..+..|||||+-.++||.+|+. + -+++||||||..||+.....++++|..+... +. +|++|||++ ++
T Consensus 811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~-~~--qiiIISH~e--el 885 (908)
T COG0419 811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSD-GR--QIIIISHVE--EL 885 (908)
T ss_pred cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhc-CC--eEEEEeChH--HH
Confidence 4668999999999888887654 5 6999999999999999999999999999854 55 999999994 68
Q ss_pred HhhcCeEEEeeCC
Q 044030 244 FQLFHNLCLLSAG 256 (449)
Q Consensus 244 ~~~~D~v~~l~~G 256 (449)
...+|.++.++..
T Consensus 886 ~e~~~~~i~V~k~ 898 (908)
T COG0419 886 KERADVRIRVKKD 898 (908)
T ss_pred HHhCCeEEEEEec
Confidence 8899999998743
|
|
| >PRK06002 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.8e-07 Score=97.18 Aligned_cols=189 Identities=19% Similarity=0.163 Sum_probs=109.7
Q ss_pred CCCeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC---Ee
Q 044030 33 DDGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING---HK 109 (449)
Q Consensus 33 ~~~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g---~~ 109 (449)
.++..++.++++..| . .+..+++.++ .+.+||.++|+||||||||||+++|+++..++ .|.|.+.| .+
T Consensus 135 ~~p~~~~r~~v~~~l-~----TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd---~gvv~liGergre 205 (450)
T PRK06002 135 TAPPAMTRARVETGL-R----TGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFD---TVVIALVGERGRE 205 (450)
T ss_pred CCCCCeEeecceEEc-C----CCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---eeeeeecccCCcc
Confidence 344457888998873 2 3467899996 99999999999999999999999999998764 79888865 33
Q ss_pred cc---------cccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCCh-
Q 044030 110 KA---------LAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSG- 179 (449)
Q Consensus 110 ~~---------~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSg- 179 (449)
.. ...+.+++|+|.+.-.. .+-...+.+ -.+.+.+..-|-+-.. .+.+|+-
T Consensus 206 v~e~~~~~l~~~r~rtI~vV~qsd~~~~---~r~~~~~~a--------------~~iAEyfrd~G~~Vll--~~DslTr~ 266 (450)
T PRK06002 206 VREFLEDTLADNLKKAVAVVATSDESPM---MRRLAPLTA--------------TAIAEYFRDRGENVLL--IVDSVTRF 266 (450)
T ss_pred HHHHhHHHHHHhhCCeEEEEEcCCCCHH---HHHHHHHHH--------------HHHHHHHHHcCCCEEE--eccchHHH
Confidence 21 11246899999875211 011111100 0011111111111000 0011110
Q ss_pred HHHHH-HHHHHHHHhCCCEEEEeCC--CCCCCHHHHHHHHHHHHHHHhh---cCCCeEEEEEecCCcHHH-HhhcCeEEE
Q 044030 180 GQKRR-VSISIEILTRPKLLFLDEP--TSGLDSAASYYVMSRIAKLGQR---DGIGRTIIASIHQPSSEV-FQLFHNLCL 252 (449)
Q Consensus 180 GerqR-v~ia~aL~~~P~llllDEP--tsgLD~~~~~~i~~~l~~l~~~---~g~g~tii~~tH~~~~~i-~~~~D~v~~ 252 (449)
-+-+| +++ .+.|| +.|--+..-..+-+++.+..+. .| ..|.+.+..-+.+++ ..++|.+.-
T Consensus 267 A~A~rEisl-----------~~ge~P~~~gyp~~vf~~l~~l~ERag~~~~~~G-SIT~~~tvl~~~dd~~dpI~d~~~~ 334 (450)
T PRK06002 267 AHAAREVAL-----------AAGEPPVARGYPPSVFSELPRLLERAGPGAEGGG-SITGIFSVLVDGDDHNDPVADSIRG 334 (450)
T ss_pred HHHHHHHHH-----------hcCCCCccccCCccHHHHhhHHHHHhccCCCCCe-eeeEEEEEEecCCCCCCccHHHHHh
Confidence 01111 111 22454 3367777667777777776642 23 367777766554443 235777777
Q ss_pred eeCCeEEEe
Q 044030 253 LSAGQTVYF 261 (449)
Q Consensus 253 l~~G~iv~~ 261 (449)
+-+|+++..
T Consensus 335 i~Dg~ivLs 343 (450)
T PRK06002 335 TLDGHIVLD 343 (450)
T ss_pred hcceEEEEc
Confidence 888999875
|
|
| >cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.9e-06 Score=84.31 Aligned_cols=157 Identities=17% Similarity=0.164 Sum_probs=84.9
Q ss_pred ccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHH
Q 044030 55 SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKE 134 (449)
Q Consensus 55 ~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e 134 (449)
+...|+.+.+-+.+|+++.|.||+|+|||||+..++..... ..| ..+.|+.-+. +..+
T Consensus 16 g~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~---~~g-------------~~vl~iS~E~------~~~~ 73 (271)
T cd01122 16 PFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLIT---QHG-------------VRVGTISLEE------PVVR 73 (271)
T ss_pred CcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHH---hcC-------------ceEEEEEccc------CHHH
Confidence 35678998889999999999999999999999887754311 001 1123332211 1222
Q ss_pred HHHHHHhc--cCCCCCC---HHHHHHHHHHHHHHcC-Cc--hhhCccCCCCChHHHHHHHHHHHHH--hCCCEEEEeCCC
Q 044030 135 AVYYSAQL--QLPDTMP---KSDKKERAEVTIREMG-LQ--DAMNTRIRRLSGGQKRRVSISIEIL--TRPKLLFLDEPT 204 (449)
Q Consensus 135 ~l~~~~~~--~~~~~~~---~~~~~~~v~~~l~~lg-L~--~~~~~~~~~LSgGerqRv~ia~aL~--~~P~llllDEPt 204 (449)
........ ..+.... .....+.+..+++.+. .. ...+. ....+ -..-+..++.++ .+|+++++|..+
T Consensus 74 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~d~-~~~~~--~~~i~~~i~~~~~~~~~~~vvID~l~ 150 (271)
T cd01122 74 TARRLLGQYAGKRLHLPDTVFIYTLEEFDAAFDEFEGTGRLFMYDS-FGEYS--MDSVLEKVRYMAVSHGIQHIIIDNLS 150 (271)
T ss_pred HHHHHHHHHhCCCcccCCccccccHHHHHHHHHHhcCCCcEEEEcC-CCccC--HHHHHHHHHHHHhcCCceEEEECCHH
Confidence 21111100 0000000 0111123333343331 11 11111 11112 234445555555 379999999976
Q ss_pred CCCCH-------H-HHHHHHHHHHHHHhhcCCCeEEEEEecC
Q 044030 205 SGLDS-------A-ASYYVMSRIAKLGQRDGIGRTIIASIHQ 238 (449)
Q Consensus 205 sgLD~-------~-~~~~i~~~l~~l~~~~g~g~tii~~tH~ 238 (449)
.-.+. . ....++..|+.++++.+. ||++++|-
T Consensus 151 ~l~~~~~~~~~~~~~~~~~~~~L~~la~~~~v--tvll~sq~ 190 (271)
T cd01122 151 IMVSDERASGDERKALDEIMTKLRGFATEHGI--HITLVSHL 190 (271)
T ss_pred HHhccCCCchhHHHHHHHHHHHHHHHHHHhCC--EEEEEecc
Confidence 64332 1 245677889999888876 99999985
|
Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands. |
| >TIGR02680 conserved hypothetical protein TIGR02680 | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.3e-07 Score=109.31 Aligned_cols=64 Identities=20% Similarity=0.389 Sum_probs=54.5
Q ss_pred hCccCCCCChHHHHHHH----HHHH--------HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEec
Q 044030 170 MNTRIRRLSGGQKRRVS----ISIE--------ILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIH 237 (449)
Q Consensus 170 ~~~~~~~LSgGerqRv~----ia~a--------L~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH 237 (449)
.++.+++||||||||++ +|++ +..+|++++|||||+|||+.+...+++++.++ +. ++|++||
T Consensus 1241 ~~~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l----~~--~~i~~s~ 1314 (1353)
T TIGR02680 1241 LTHRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL----DL--DFVMTSE 1314 (1353)
T ss_pred hhccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh----CC--CEEEEcc
Confidence 34556899999999996 5644 45799999999999999999999999999887 33 8999998
Q ss_pred CC
Q 044030 238 QP 239 (449)
Q Consensus 238 ~~ 239 (449)
..
T Consensus 1315 ~~ 1316 (1353)
T TIGR02680 1315 RE 1316 (1353)
T ss_pred ch
Confidence 73
|
Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length. |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.9e-07 Score=105.56 Aligned_cols=166 Identities=21% Similarity=0.250 Sum_probs=90.2
Q ss_pred eeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHHHHHHH
Q 044030 61 DLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSA 140 (449)
Q Consensus 61 ~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~ 140 (449)
=+++..+++++++|+|++|+|||||++++++.+... ..|.+++++........ .+-.++... .+...
T Consensus 199 lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~--F~g~vfv~~~~v~~~~~--~~~~~~~~~-------~~~~~-- 265 (1153)
T PLN03210 199 LLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQ--FQSSVFIDRAFISKSME--IYSSANPDD-------YNMKL-- 265 (1153)
T ss_pred HHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhc--CCeEEEeeccccccchh--hcccccccc-------cchhH--
Confidence 356778899999999999999999999998876442 47899887632111000 000000000 00000
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 044030 141 QLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIA 220 (449)
Q Consensus 141 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~ 220 (449)
...++.+.++++..++. +..+ ++.|+| |..++-+|+||+- |.. ..++.|.
T Consensus 266 ----------~l~~~~l~~il~~~~~~------~~~~-~~~~~~------L~~krvLLVLDdv----~~~---~~l~~L~ 315 (1153)
T PLN03210 266 ----------HLQRAFLSEILDKKDIK------IYHL-GAMEER------LKHRKVLIFIDDL----DDQ---DVLDALA 315 (1153)
T ss_pred ----------HHHHHHHHHHhCCCCcc------cCCH-HHHHHH------HhCCeEEEEEeCC----CCH---HHHHHHH
Confidence 01122233444444331 2222 556655 3355667888984 332 3455555
Q ss_pred HHHhhcCCCeEEEEEecCCcHHHHhh-cCeEEEeeCCeEEEecChhhHHHHHHHCCC
Q 044030 221 KLGQRDGIGRTIIASIHQPSSEVFQL-FHNLCLLSAGQTVYFGPATAANEFFAFNGF 276 (449)
Q Consensus 221 ~l~~~~g~g~tii~~tH~~~~~i~~~-~D~v~~l~~G~iv~~g~~~~~~~~f~~~g~ 276 (449)
...+..|.|.+||+|||+. ..+... +|+++.+.. -+.+++.+.|....+
T Consensus 316 ~~~~~~~~GsrIIiTTrd~-~vl~~~~~~~~~~v~~------l~~~ea~~LF~~~Af 365 (1153)
T PLN03210 316 GQTQWFGSGSRIIVITKDK-HFLRAHGIDHIYEVCL------PSNELALEMFCRSAF 365 (1153)
T ss_pred hhCccCCCCcEEEEEeCcH-HHHHhcCCCeEEEecC------CCHHHHHHHHHHHhc
Confidence 4432223355999999995 333332 566655431 134567777766544
|
syringae 6; Provisional |
| >PRK09825 idnK D-gluconate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.7e-07 Score=86.31 Aligned_cols=64 Identities=23% Similarity=0.300 Sum_probs=43.3
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc----cCcEEEEcCCCCCCCCCCHHHHHHH
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA----YGTSAYVTQDDTLITTLTVKEAVYY 138 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~----~~~i~yv~Q~~~l~~~lTv~e~l~~ 138 (449)
+||+++|+|+||||||||+++|+|++.+ +.++|.+.... ....++.+|+...++..++..++.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~-------~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 69 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA-------KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASY 69 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC-------EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHH
Confidence 6999999999999999999999998743 46777653211 1124556666544455555555443
|
|
| >PRK06315 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=8.9e-07 Score=92.15 Aligned_cols=170 Identities=16% Similarity=0.171 Sum_probs=99.2
Q ss_pred ccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE---ecc------c--ccCcEEEE---
Q 044030 55 SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH---KKA------L--AYGTSAYV--- 120 (449)
Q Consensus 55 ~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~---~~~------~--~~~~i~yv--- 120 (449)
+..+++++ +.+.+|+.++|+|+||+|||||+++|+|..+.. ..|.|.+.|+ +.. . .....+++
T Consensus 151 Gi~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~--~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvva 227 (442)
T PRK06315 151 GVRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEA--DVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVS 227 (442)
T ss_pred eEEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccC--CceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEe
Confidence 35689998 999999999999999999999999999987432 2477777553 221 1 11234555
Q ss_pred --cCCCC--CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-----hhhCccCCCCChHHHHHHHHHHHH
Q 044030 121 --TQDDT--LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-----DAMNTRIRRLSGGQKRRVSISIEI 191 (449)
Q Consensus 121 --~Q~~~--l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-----~~~~~~~~~LSgGerqRv~ia~aL 191 (449)
+|++. +.+.+ +...+.-..+.+....+...+...++.++++.++|. .....++..+|
T Consensus 228 ts~q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~~gepp~~~gypP~~fS------------- 293 (442)
T PRK06315 228 TSDQSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFS------------- 293 (442)
T ss_pred CCCCCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcCCCCCccccCCCCchhh-------------
Confidence 88753 33333 444443333322111112345567788888888883 33444444433
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-hcCCCeEEEEEecCCcHHH-HhhcCeEEEeeCCeEEEecCh
Q 044030 192 LTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQ-RDGIGRTIIASIHQPSSEV-FQLFHNLCLLSAGQTVYFGPA 264 (449)
Q Consensus 192 ~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~-~~g~g~tii~~tH~~~~~i-~~~~D~v~~l~~G~iv~~g~~ 264 (449)
.+-+++.+..+ ..| ..|.|.+..-+.+++ ..++|.+.-+-+|+++..-..
T Consensus 294 ----------------------~l~~llERag~~~~G-SITai~tVl~~gdD~~dpi~d~~~~i~dg~ivLsr~l 345 (442)
T PRK06315 294 ----------------------TLPKLLERSGASDKG-TITAFYTVLVAGDDMNEPVADEVKSILDGHIVLSNAL 345 (442)
T ss_pred ----------------------HhHHHHHHhcCCCCc-ceeeeEEEEecCCCCCcccHHHhhhhcceEEEEeccH
Confidence 22233333221 122 245544443322221 346788888899999986543
|
|
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=98.34 E-value=8.5e-07 Score=78.70 Aligned_cols=64 Identities=16% Similarity=0.120 Sum_probs=44.0
Q ss_pred HHHHHHHHHcCCc-hhhCccCCCCChHHHHHHHHHHHHH-----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 044030 155 ERAEVTIREMGLQ-DAMNTRIRRLSGGQKRRVSISIEIL-----TRPKLLFLDEPTSGLDSAASYYVMSRIAKL 222 (449)
Q Consensus 155 ~~v~~~l~~lgL~-~~~~~~~~~LSgGerqRv~ia~aL~-----~~P~llllDEPtsgLD~~~~~~i~~~l~~l 222 (449)
..+.+++...+.. -....++..++++++++........ ..|+++ |+|++|.....++++.|.++
T Consensus 100 ~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 100 LEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred HHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence 3455666666543 2234556778999988877665532 345555 99999999999999888764
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >PRK13898 type IV secretion system ATPase VirB4; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.3e-05 Score=88.33 Aligned_cols=48 Identities=15% Similarity=0.162 Sum_probs=41.5
Q ss_pred HHHhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhhcCCCeEEEEEecCCc
Q 044030 190 EILTRPKLLFLDEPTSGLD-SAASYYVMSRIAKLGQRDGIGRTIIASIHQPS 240 (449)
Q Consensus 190 aL~~~P~llllDEPtsgLD-~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~ 240 (449)
.+..+|.++++|||...|| +..+..+.+.++.+++ .|. .++++||++.
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK-~~~--~~i~~TQ~~~ 686 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRK-LNT--FVIFATQSVE 686 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHH-cCC--EEEEEeCCHH
Confidence 3456899999999999999 8999999999999974 454 8999999974
|
|
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=98.30 E-value=8.1e-07 Score=67.14 Aligned_cols=37 Identities=43% Similarity=0.590 Sum_probs=30.3
Q ss_pred eeeeeEEEec-CeEEEEECCCCCcHHHHHHHHHcCCCC
Q 044030 59 LEDLTGYAKP-GHLLAIMGPSGSGKTTLLDALAGRLGS 95 (449)
Q Consensus 59 L~~vs~~i~~-Ge~~~IlGpnGaGKSTLL~~l~G~~~~ 95 (449)
+++.++.+.+ |.++.|.|||||||||||++|.=.+-+
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~ 49 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYG 49 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4556777776 569999999999999999999876644
|
|
| >TIGR02903 spore_lon_C ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.2e-06 Score=93.47 Aligned_cols=113 Identities=17% Similarity=0.231 Sum_probs=74.7
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCCCCCC-----CceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHHHHHHHhc
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRLGSDT-----RQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQL 142 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~-----~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~ 142 (449)
..+.++|+||||+|||||+++|.+...+.. ...+-|.++|...... .....+-.++
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d----------------~~~i~~~llg--- 234 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWD----------------PREVTNPLLG--- 234 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCC----------------HHHHhHHhcC---
Confidence 456799999999999999999998764310 0123355555322100 0000111111
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 044030 143 QLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAK 221 (449)
Q Consensus 143 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~ 221 (449)
.. .+...+.+.+.++..|+.+..+..+..+||| +||||| +..||+..+..+.+.|++
T Consensus 235 ----~~-~~~~~~~a~~~l~~~gl~~~~~g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~Le~ 291 (615)
T TIGR02903 235 ----SV-HDPIYQGARRDLAETGVPEPKTGLVTDAHGG----------------VLFIDE-IGELDPLLQNKLLKVLED 291 (615)
T ss_pred ----Cc-cHHHHHHHHHHHHHcCCCchhcCchhhcCCC----------------eEEEec-cccCCHHHHHHHHHHHhh
Confidence 01 1111233455678889988888889999999 999999 799999999999999975
|
Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC. |
| >PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.5e-06 Score=71.08 Aligned_cols=51 Identities=31% Similarity=0.471 Sum_probs=39.4
Q ss_pred CccCCCCChHHH-HHHHHHHHHH------h------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 044030 171 NTRIRRLSGGQK-RRVSISIEIL------T------RPKLLFLDEPTSGLDSAASYYVMSRIAK 221 (449)
Q Consensus 171 ~~~~~~LSgGer-qRv~ia~aL~------~------~P~llllDEPtsgLD~~~~~~i~~~l~~ 221 (449)
.+..+.+||||| ..+.++.+++ . .|.+++|||||++||+.....++++|++
T Consensus 27 ~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 27 SRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp EEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred eccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 456689999999 4444444432 2 3799999999999999999999999874
|
|
| >TIGR00416 sms DNA repair protein RadA | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.2e-06 Score=90.23 Aligned_cols=63 Identities=11% Similarity=0.204 Sum_probs=45.6
Q ss_pred hCCCEEEEeCCCCC----C-----CHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcH-------HHHhhcCeEEEeeCC
Q 044030 193 TRPKLLFLDEPTSG----L-----DSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSS-------EVFQLFHNLCLLSAG 256 (449)
Q Consensus 193 ~~P~llllDEPtsg----L-----D~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~-------~i~~~~D~v~~l~~G 256 (449)
.+|+++++|.-++= + +......++..|.+++++.|. |+++++|...+ .+..++|.|+.|+.+
T Consensus 169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~gi--Tvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~ 246 (454)
T TIGR00416 169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGI--AIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGD 246 (454)
T ss_pred cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCC--EEEEEeccccCCccCCcccEeeeceEEEEEecc
Confidence 47999999987542 1 123355667778888878766 99999997431 257789999999865
Q ss_pred e
Q 044030 257 Q 257 (449)
Q Consensus 257 ~ 257 (449)
+
T Consensus 247 ~ 247 (454)
T TIGR00416 247 R 247 (454)
T ss_pred C
Confidence 4
|
The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)). |
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.4e-05 Score=73.82 Aligned_cols=65 Identities=15% Similarity=0.166 Sum_probs=46.9
Q ss_pred HHHHHHHHcCCc-hhhCccCCCCChHHHHHHH--HHHHHHh-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 044030 156 RAEVTIREMGLQ-DAMNTRIRRLSGGQKRRVS--ISIEILT-RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQ 224 (449)
Q Consensus 156 ~v~~~l~~lgL~-~~~~~~~~~LSgGerqRv~--ia~aL~~-~P~llllDEPtsgLD~~~~~~i~~~l~~l~~ 224 (449)
.+.++++..++. -..-.++..+|+|+++++. ++..+-. +++++ |+|++|......+.+.|.++.+
T Consensus 126 ~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 126 QMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred HHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhc
Confidence 445566666664 3445567789999999987 4444433 34433 9999999999999999988764
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.23 E-value=2e-06 Score=87.88 Aligned_cols=106 Identities=22% Similarity=0.256 Sum_probs=69.2
Q ss_pred eeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec--ccccCcEEEEcCCCCCCCCCCHHHHH
Q 044030 59 LEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKK--ALAYGTSAYVTQDDTLITTLTVKEAV 136 (449)
Q Consensus 59 L~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l 136 (449)
++.+.-.+++|++++|+|+||+|||||+|+|+|...+ .+|+|.+++... ....+.+++++|...++++ +...++
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~---~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~Dt-pG~~~~ 260 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQ---KTGAVREDDSKGRHTTTHRELHPLPSGGLLIDT-PGMREL 260 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhccc---ceeeEEECCCCCcchhhhccEEEecCCCeecCC-Cchhhh
Confidence 4555556789999999999999999999999998876 489999987432 1223568899998877764 444444
Q ss_pred HHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCcc
Q 044030 137 YYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTR 173 (449)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 173 (449)
.+.... .. .......+.++.+.+.+.+|.+..
T Consensus 261 ~l~~~~---~~--l~~~f~~~~~~~~~c~f~~c~h~~ 292 (356)
T PRK01889 261 QLWDAE---DG--VEETFSDIEELAAQCRFRDCAHEA 292 (356)
T ss_pred cccCch---hh--HHHhHHHHHHHHccCCCCCCCCCC
Confidence 332100 00 111122345555666666665543
|
|
| >PF00488 MutS_V: MutS domain V C-terminus | Back alignment and domain information |
|---|
Probab=98.22 E-value=4.6e-05 Score=73.44 Aligned_cols=53 Identities=21% Similarity=0.309 Sum_probs=36.4
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhhcCCCeEEEEEecCCcHHHHhhcC
Q 044030 192 LTRPKLLFLDEPTSGLDSAASYYVMS-RIAKLGQRDGIGRTIIASIHQPSSEVFQLFH 248 (449)
Q Consensus 192 ~~~P~llllDEPtsgLD~~~~~~i~~-~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D 248 (449)
+.+..++|+||+..|=++.....+.. .++.+.++.+. .+|++||.. ++.++.+
T Consensus 120 ~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~--~~i~~TH~~--~l~~~~~ 173 (235)
T PF00488_consen 120 ATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGC--FVIIATHFH--ELAELLE 173 (235)
T ss_dssp --TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT---EEEEEES-G--GGGGHHH
T ss_pred cccceeeecccccCCCChhHHHHHHHHHHHHHHHhccc--cEEEEeccc--hhHHHhh
Confidence 34678999999999999998887654 44556643455 899999995 3555443
|
; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B .... |
| >PRK13873 conjugal transfer ATPase TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.7e-05 Score=86.84 Aligned_cols=46 Identities=24% Similarity=0.283 Sum_probs=40.1
Q ss_pred HhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhhcCCCeEEEEEecCCc
Q 044030 192 LTRPKLLFLDEPTSGLD-SAASYYVMSRIAKLGQRDGIGRTIIASIHQPS 240 (449)
Q Consensus 192 ~~~P~llllDEPtsgLD-~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~ 240 (449)
-.+|+++++|||+.+|| +..+..+.+.++.+++ .|. +++++||++.
T Consensus 633 ~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK-~~~--~~i~~TQ~~~ 679 (811)
T PRK13873 633 DGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRK-KNV--SVIFATQSLA 679 (811)
T ss_pred cCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHH-cCC--EEEEEECCHH
Confidence 34899999999999999 7889999999999975 454 9999999974
|
|
| >TIGR00152 dephospho-CoA kinase | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.3e-06 Score=79.29 Aligned_cols=71 Identities=10% Similarity=0.136 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcH-HHHhhcCeEEEeeC
Q 044030 180 GQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSS-EVFQLFHNLCLLSA 255 (449)
Q Consensus 180 GerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~-~i~~~~D~v~~l~~ 255 (449)
|+-.|..||..+..+|+.+..+| +.+||.....+.+.+.+..+ .|. +||+.+|.+.. .+...||.++++..
T Consensus 61 g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~-~~~--~vvi~~pll~e~~~~~~~D~vv~V~~ 132 (188)
T TIGR00152 61 GELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQS-KLA--YVLLDVPLLFENKLRSLCDRVIVVDV 132 (188)
T ss_pred CCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhc-CCC--EEEEEchHhhhCCcHHhCCEEEEEEC
Confidence 88999999999999999988777 89999999999999988763 344 99999998632 26678999988764
|
This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases. |
| >PRK08149 ATP synthase SpaL; Validated | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.8e-06 Score=88.17 Aligned_cols=179 Identities=16% Similarity=0.129 Sum_probs=100.3
Q ss_pred cccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---------ccCcEEEEcCCC
Q 044030 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---------AYGTSAYVTQDD 124 (449)
Q Consensus 54 ~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---------~~~~i~yv~Q~~ 124 (449)
.+..+++++ +.+.+||.++|+|+||+|||||+++|++...++...-|.|-.+|.+... ..+++++|+...
T Consensus 137 tGi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~s 215 (428)
T PRK08149 137 TGVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATS 215 (428)
T ss_pred CCcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECC
Confidence 346799999 9999999999999999999999999999887653334889888876421 124577777654
Q ss_pred CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCCh-HHHHH-HHHHHHHHhCCCEEEEeC
Q 044030 125 TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSG-GQKRR-VSISIEILTRPKLLFLDE 202 (449)
Q Consensus 125 ~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSg-GerqR-v~ia~aL~~~P~llllDE 202 (449)
.-.+.+.+ ...+.+ ..+.+.+...|-+-.. .+.+|+- -+.+| ++ +.++|
T Consensus 216 d~p~~~r~--~a~~~a--------------~tiAE~fr~~G~~Vll--~~DslTr~A~A~rEi~-----------l~~ge 266 (428)
T PRK08149 216 DFSSVDRC--NAALVA--------------TTVAEYFRDQGKRVVL--FIDSMTRYARALRDVA-----------LAAGE 266 (428)
T ss_pred CCCHHHHH--hHHHHH--------------HHHHHHHHHcCCCEEE--EccchHHHHHHHHHhH-----------hhcCC
Confidence 43321100 000100 0111122222210000 0001110 00000 11 23456
Q ss_pred CCC--CCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHH-HhhcCeEEEeeCCeEEEec
Q 044030 203 PTS--GLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEV-FQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 203 Pts--gLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i-~~~~D~v~~l~~G~iv~~g 262 (449)
|-+ |-.+..-..+-+++.+..+..+-..|.+.+..-+.+++ ..++|.+.-+-+|+++..-
T Consensus 267 ~P~~~Gyp~~vfs~l~~l~ERag~~~~GSIT~~~tVl~~~dD~~dpi~d~~~~ilDg~ivLsr 329 (428)
T PRK08149 267 LPARRGYPASVFDSLPRLLERPGATLAGSITAFYTVLLESEEEPDPIGDEIRSILDGHIYLSR 329 (428)
T ss_pred CCcccccCccHHHHHHHHHHhccCCCCCCceEEEEEEecCCCCCCCchhhhheeccEEEEEcH
Confidence 544 66666666666666665432221357777665543332 3367888888899998753
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.8e-05 Score=68.19 Aligned_cols=57 Identities=19% Similarity=0.289 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhc--CCCeEEEEEecCC
Q 044030 182 KRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRD--GIGRTIIASIHQP 239 (449)
Q Consensus 182 rqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~--g~g~tii~~tH~~ 239 (449)
.+..........++.++++||.-.. ++.....+.+.+....... ..+.++|++++..
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 4555556677788999999998765 5666777888888765310 1144899999864
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB | Back alignment and domain information |
|---|
Probab=98.15 E-value=4e-06 Score=85.62 Aligned_cols=75 Identities=27% Similarity=0.292 Sum_probs=45.8
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccccc----CcEEEEcCCCCCCCCCCHHHHHHHHHh
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAY----GTSAYVTQDDTLITTLTVKEAVYYSAQ 141 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~----~~i~yv~Q~~~l~~~lTv~e~l~~~~~ 141 (449)
++|.+++|.||+||||||+|++|++.+.+..+..+.|.....+..... ...+++.|...--...+..+.+.-+.+
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR 210 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNALR 210 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHHHhc
Confidence 589999999999999999999999987432112335555444443211 224677776432112344555544433
|
Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems. |
| >cd01121 Sms Sms (bacterial radA) DNA repair protein | Back alignment and domain information |
|---|
Probab=98.13 E-value=8.5e-06 Score=83.61 Aligned_cols=62 Identities=11% Similarity=0.230 Sum_probs=43.9
Q ss_pred hCCCEEEEeCCCC----CCC-----HHHHHHHHHHHHHHHhhcCCCeEEEEEecCCc-------HHHHhhcCeEEEeeCC
Q 044030 193 TRPKLLFLDEPTS----GLD-----SAASYYVMSRIAKLGQRDGIGRTIIASIHQPS-------SEVFQLFHNLCLLSAG 256 (449)
Q Consensus 193 ~~P~llllDEPts----gLD-----~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~-------~~i~~~~D~v~~l~~G 256 (449)
.+|+++++|+-.+ .+| ......++..|.+++++.+. |+|++.|-.. ..+.+++|.|+.++..
T Consensus 157 ~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~i--tvilvghvtk~g~~aG~~~leh~vD~Vi~le~~ 234 (372)
T cd01121 157 LKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNI--PIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGD 234 (372)
T ss_pred cCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCC--eEEEEeeccCCCcccCcccchhhceEEEEEEcC
Confidence 4899999999632 333 23345567778888877766 9999988522 1367889999988754
|
This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules. |
| >PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.3e-06 Score=81.92 Aligned_cols=73 Identities=21% Similarity=0.301 Sum_probs=47.4
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeE----EEECCEeccc-ccCcEEEEcCCCCCCCCCCHHHHHHHHHh
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGK----ILINGHKKAL-AYGTSAYVTQDDTLITTLTVKEAVYYSAQ 141 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~----I~~~g~~~~~-~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~ 141 (449)
.+..++||.||||||||||.++|++.+++. .|. |.+++..... .....+++++.. .+..+++.+.+.+...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~---~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~-~~~~~d~~~~~~~l~~ 106 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQD---GELPAIQVPMDGFHLDNAVLDAHGLRPRKG-APETFDVAGLAALLRR 106 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhc---cCCceEEEecccccCCHHHHHhcccccccC-CCCCCCHHHHHHHHHH
Confidence 456799999999999999999999998763 676 5555532211 112345665433 3355677666655444
Q ss_pred cc
Q 044030 142 LQ 143 (449)
Q Consensus 142 ~~ 143 (449)
++
T Consensus 107 l~ 108 (229)
T PRK09270 107 LR 108 (229)
T ss_pred HH
Confidence 43
|
|
| >PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=98.11 E-value=4.6e-05 Score=78.41 Aligned_cols=81 Identities=21% Similarity=0.343 Sum_probs=64.5
Q ss_pred CCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCC-----CHHHHHHH----------HHHHHHHHhhcCCCeEEEEEecCC
Q 044030 175 RRLSGGQKRRVSISIEILTRPKLLFLDEPTSGL-----DSAASYYV----------MSRIAKLGQRDGIGRTIIASIHQP 239 (449)
Q Consensus 175 ~~LSgGerqRv~ia~aL~~~P~llllDEPtsgL-----D~~~~~~i----------~~~l~~l~~~~g~g~tii~~tH~~ 239 (449)
.+=||-.-|=.+|..||=...++||+||=||+- |...+..+ ++.++.+.++.|. +.|+++=-
T Consensus 321 ~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~Gv--StIlV~Gg- 397 (448)
T PF09818_consen 321 ENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGV--STILVVGG- 397 (448)
T ss_pred cCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCc--eEEEEecc-
Confidence 467999999999999999999999999999975 55555544 6778888777765 65555555
Q ss_pred cHHHHhhcCeEEEeeCCeE
Q 044030 240 SSEVFQLFHNLCLLSAGQT 258 (449)
Q Consensus 240 ~~~i~~~~D~v~~l~~G~i 258 (449)
+...+..+|+|++|++=+.
T Consensus 398 sgdy~~vAD~Vi~Md~Y~~ 416 (448)
T PF09818_consen 398 SGDYFDVADRVIMMDEYRP 416 (448)
T ss_pred chhhHhhCCEEEEecCccc
Confidence 4678999999999997654
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases. |
| >TIGR00767 rho transcription termination factor Rho | Back alignment and domain information |
|---|
Probab=98.08 E-value=7.2e-06 Score=84.00 Aligned_cols=54 Identities=28% Similarity=0.312 Sum_probs=46.7
Q ss_pred eeEEEEeeEEEEeecCcccccceee-----------eeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCC
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILE-----------DLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLG 94 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~-----------~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~ 94 (449)
-.+.|+||++.| + +.+.+|+ |+++.|.+|+.++|+||+|||||||++.|+..+.
T Consensus 129 ~ri~Fe~LTf~Y-P----~er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 129 NRVLFENLTPLY-P----NERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CCeEEEEeeecC-C----CccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 358999999983 3 3456886 9999999999999999999999999999998653
|
Members of this family differ in the specificity of RNA binding. |
| >cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein | Back alignment and domain information |
|---|
Probab=98.07 E-value=5.6e-06 Score=83.16 Aligned_cols=178 Identities=18% Similarity=0.175 Sum_probs=97.7
Q ss_pred ccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecc---c----------ccCcEEEEc
Q 044030 55 SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKA---L----------AYGTSAYVT 121 (449)
Q Consensus 55 ~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~---~----------~~~~i~yv~ 121 (449)
+..+++++ +.+.+|+.++|+|+||+|||||+++|+|...++ .|.+..-|++.. . ..+.+.++.
T Consensus 56 Gi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~---~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~ 131 (326)
T cd01136 56 GVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTAD---VNVIALIGERGREVREFIEKDLGEEGLKRSVVVVA 131 (326)
T ss_pred CcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCC---EEEEEEEecCCccHHHHHHHHHhcCccceEEEEEc
Confidence 46799999 999999999999999999999999999998764 577766554211 0 012233333
Q ss_pred CCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEe
Q 044030 122 QDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLD 201 (449)
Q Consensus 122 Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllD 201 (449)
+.+. ++.+.+.-+. ..-.+.+.+..-|-+-.. .+.+++ | .|+|+- -=-+.+.
T Consensus 132 t~d~-----~~~~r~~~~~------------~a~~~AEyfr~~g~~Vll--~~Dslt-----r--~a~A~r--ei~~~~g 183 (326)
T cd01136 132 TSDE-----SPLLRVKAAY------------TATAIAEYFRDQGKDVLL--LMDSLT-----R--FAMAQR--EIGLAAG 183 (326)
T ss_pred CCCC-----CHHHHHHHHH------------HHHHHHHHHHHcCCCeEE--Eeccch-----H--HHHHHH--HHHHhcC
Confidence 3222 1111111000 000011111111211000 001111 1 111110 0002234
Q ss_pred CC--CCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHH-HhhcCeEEEeeCCeEEEecCh
Q 044030 202 EP--TSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEV-FQLFHNLCLLSAGQTVYFGPA 264 (449)
Q Consensus 202 EP--tsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i-~~~~D~v~~l~~G~iv~~g~~ 264 (449)
|| ..|.++..-..+-+++.+..+..+-..|.|.+..-+.+++ ..++|.+.-+-+|+++..-..
T Consensus 184 e~p~~~gyp~~~~~~~~~l~ERag~~~~GSIT~i~tv~~~gdd~~dpi~~~~~~~~dg~ivL~r~l 249 (326)
T cd01136 184 EPPTTKGYPPSVFALLPRLLERAGNSDKGSITAFYTVLVEGDDLNEPIADAVRSILDGHIVLSRAL 249 (326)
T ss_pred CCCCcCCcChHHHHHhHHHHHHhcCCCCCCeeeeeeeeecCCCCCcchHHhhhhccceEEEEcCcH
Confidence 65 5688888888887777776533221368887766554333 246778888889999886544
|
This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway. |
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=98.02 E-value=3.8e-06 Score=79.13 Aligned_cols=28 Identities=43% Similarity=0.624 Sum_probs=26.0
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCCC
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRLG 94 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~~ 94 (449)
++|++++|.||||||||||+++|+++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999999999864
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >PRK13764 ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=4.4e-05 Score=82.45 Aligned_cols=63 Identities=21% Similarity=0.361 Sum_probs=47.3
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEec---------------CCcHHHHhhcCeEEEeeC
Q 044030 191 ILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIH---------------QPSSEVFQLFHNLCLLSA 255 (449)
Q Consensus 191 L~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH---------------~~~~~i~~~~D~v~~l~~ 255 (449)
|..+|+++++||.-..-| ++.+..++ ..|. .++.+.| ++ ..+...+|+++.+++
T Consensus 321 LR~rPD~IivGEiRd~Et-------~~~~~~l~-~ag~--GvigTlHA~sa~~Ai~Rl~~~v~l-g~i~~iID~IV~I~~ 389 (602)
T PRK13764 321 LLVRPDYTIYDEMRKTED-------FKIFADMR-LAGV--GMVGVVHATRPIDAIQRFIGRVEL-GMIPQIVDTVIFIED 389 (602)
T ss_pred HhhCCCEEEECCCCCHHH-------HHHHHHHH-HcCC--eEEEEECCCCHHHHHHHHHhhhhh-chHHHhhcEEEEEeC
Confidence 678999999999985332 44444444 3344 7999999 65 467789999999999
Q ss_pred CeE--EEecCh
Q 044030 256 GQT--VYFGPA 264 (449)
Q Consensus 256 G~i--v~~g~~ 264 (449)
|++ +|.+..
T Consensus 390 G~I~~v~~~~~ 400 (602)
T PRK13764 390 GEVSKVYDLEF 400 (602)
T ss_pred CEEEEEEeeee
Confidence 999 777653
|
|
| >PLN02796 D-glycerate 3-kinase | Back alignment and domain information |
|---|
Probab=98.01 E-value=2e-06 Score=86.61 Aligned_cols=55 Identities=27% Similarity=0.319 Sum_probs=44.8
Q ss_pred cceeeeeeEEE---ecCeE-----EEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec
Q 044030 56 SSILEDLTGYA---KPGHL-----LAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKK 110 (449)
Q Consensus 56 ~~iL~~vs~~i---~~Ge~-----~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~ 110 (449)
..+++.++..+ ++|+. +||.|+||||||||++.|.+.+.+.....|.|.+||...
T Consensus 79 ~~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYL 141 (347)
T PLN02796 79 LWCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYL 141 (347)
T ss_pred HHHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCccc
Confidence 45888999887 67776 999999999999999999999875322468888888643
|
|
| >TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family | Back alignment and domain information |
|---|
Probab=98.00 E-value=9e-05 Score=70.52 Aligned_cols=57 Identities=18% Similarity=0.207 Sum_probs=42.0
Q ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCc--------HHHHhhcCeEEEee
Q 044030 194 RPKLLFLDEPTS------GLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPS--------SEVFQLFHNLCLLS 254 (449)
Q Consensus 194 ~P~llllDEPts------gLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~--------~~i~~~~D~v~~l~ 254 (449)
+++++++| |.+ +.|...+..+.++++.++ +.|. |+++++|... ..+..+||.|++|+
T Consensus 107 ~~~~vVID-sls~l~~~~~~~~~~r~~l~~l~~~lk-~~~~--tvll~s~~~~~~~~~~~~~~~~~l~D~vI~L~ 177 (224)
T TIGR03880 107 GASRVVID-PISLLETLFDDDAERRTELFRFYSSLR-ETGV--TTILTSEADKTNVFASKYGLIEYLADGVIILK 177 (224)
T ss_pred CCCEEEEc-ChHHHhhhcCCHHHHHHHHHHHHHHHH-hCCC--EEEEEEcccCCCCCccCCCceEEEEeEEEEEe
Confidence 68899999 433 445666778888998887 4555 9999999621 22567899999995
|
This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself. |
| >PRK09099 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=8.2e-06 Score=85.10 Aligned_cols=52 Identities=27% Similarity=0.436 Sum_probs=46.1
Q ss_pred cccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 044030 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHK 109 (449)
Q Consensus 54 ~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~ 109 (449)
.+..+++++ +.+.+|+.++|+|+||+|||||+++|+|...++ .|.|.+.|+.
T Consensus 149 TGi~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d---~~vi~~iGer 200 (441)
T PRK09099 149 TGVRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCD---VNVIALIGER 200 (441)
T ss_pred CCceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCC---eEEEEEEccC
Confidence 346799999 999999999999999999999999999988764 7888888853
|
|
| >PRK07594 type III secretion system ATPase SsaN; Validated | Back alignment and domain information |
|---|
Probab=98.00 E-value=6.7e-06 Score=85.46 Aligned_cols=64 Identities=19% Similarity=0.362 Sum_probs=51.7
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHK 109 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~ 109 (449)
.++.++++.. +. .+..+++++ +.+.+||.++|+|+||+|||||+++|+|...++ .|.+.+.|+.
T Consensus 129 ~~~r~~v~~~-l~----tGi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d---~~vi~~iGeR 192 (433)
T PRK07594 129 AMVRQPITQP-LM----TGIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDAD---SNVLVLIGER 192 (433)
T ss_pred ceeccCHhhe-eC----CCceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCC---EEEEEEECCC
Confidence 3555666655 22 356799999 999999999999999999999999999988764 6877777753
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 449 | ||||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 2e-17 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 2e-15 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-14 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 6e-14 | ||
| 1g29_1 | 372 | Malk Length = 372 | 9e-14 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 1e-13 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 2e-13 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 2e-13 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 4e-13 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 9e-13 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 1e-12 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 1e-12 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 1e-12 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 2e-12 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 2e-12 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 2e-12 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 3e-12 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 3e-12 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 3e-12 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 3e-12 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 5e-12 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 5e-12 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 5e-12 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 6e-12 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 7e-12 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 9e-12 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 1e-11 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 1e-11 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 1e-11 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 1e-11 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 1e-11 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 1e-11 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 2e-11 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 2e-11 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 3e-11 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 3e-11 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 3e-11 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 3e-11 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 7e-11 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 8e-11 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 9e-11 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 1e-10 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 3e-10 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 2e-09 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 5e-09 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 5e-09 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 1e-08 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 2e-08 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 3e-08 | ||
| 2pjz_A | 263 | The Crystal Structure Of Putative Cobalt Transport | 4e-08 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 8e-08 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 1e-07 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 2e-07 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 2e-07 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 2e-07 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 3e-07 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 3e-07 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 6e-07 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 9e-07 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 1e-06 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 1e-06 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-06 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 2e-06 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 2e-06 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 3e-06 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 3e-06 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 3e-06 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 5e-06 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 5e-06 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 6e-06 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 6e-06 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 7e-06 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 1e-05 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 1e-05 | ||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 1e-05 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 2e-05 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 2e-05 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 4e-05 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 4e-05 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 4e-05 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 5e-05 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-04 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 1e-04 | ||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 5e-04 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 7e-04 |
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 121 bits (307), Expect = 4e-32
Identities = 46/193 (23%), Positives = 85/193 (44%), Gaps = 23/193 (11%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH----- 108
G IL+ ++ + G + ++GP+G+GKTT L ++ + + G + + G
Sbjct: 26 GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSS---GIVTVFGKNVVEE 82
Query: 109 ----KKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREM 164
+K ++Y + ++ + E + + A S+ +E E
Sbjct: 83 PHEVRKLISY-----LPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIA 134
Query: 165 GLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQ 224
GL + + R+ S G R++ I+ ++ P+L LDEPTSGLD + V + + Q
Sbjct: 135 GLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ 194
Query: 225 RDGIGRTIIASIH 237
G TI+ S H
Sbjct: 195 E---GLTILVSSH 204
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 120 bits (304), Expect = 2e-31
Identities = 51/232 (21%), Positives = 94/232 (40%), Gaps = 25/232 (10%)
Query: 45 VTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKIL 104
+ + GK IL+ ++ G + G +G+GKTTLL+ L +G +
Sbjct: 27 IGRMKQGKT----ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYE---PATSGTVN 79
Query: 105 INGHKKALAYGTS-------AYVTQD--DTLITTLTVKEAV----YYSAQLQLPDTMPKS 151
+ G ++ +V+ + V + V + S +
Sbjct: 80 LFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGV---YQDIDD 136
Query: 152 DKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAA 211
+ + A ++ +G+ I LS G+K+RV I+ ++ +P++L LDEP +GLD A
Sbjct: 137 EIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIA 196
Query: 212 SYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263
++S + L +I H E+ F + LL GQ++ G
Sbjct: 197 RESLLSILDSLS-DSYPTLAMIYVTHFI-EEITANFSKILLLKDGQSIQQGA 246
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 2e-31
Identities = 42/179 (23%), Positives = 82/179 (45%), Gaps = 11/179 (6%)
Query: 59 LEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSA 118
LE +T + G+++ GP+G GKTTLL ++ L G+I+ NG G
Sbjct: 25 LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLK---GEIIYNGVPITKVKGKIF 81
Query: 119 YVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLS 178
++ ++ + ++V++ + A L K + + + D + ++ LS
Sbjct: 82 FLPEEIIVPRKISVEDYLKAVASLY-----GVKVNKNEIMDALESVEVLD-LKKKLGELS 135
Query: 179 GGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIH 237
G RRV ++ +L ++ LD+P +D + + V+ I ++ + GI II+S
Sbjct: 136 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGI--VIISSRE 192
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 3e-31
Identities = 60/224 (26%), Positives = 96/224 (42%), Gaps = 18/224 (8%)
Query: 43 LTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGK 102
L+V + + + + + L G +LA++G +G GK+TLLD L G GK
Sbjct: 5 LSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIH---RPIQGK 61
Query: 103 ILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYY--SAQLQLPDTMPKSDKKERAEVT 160
I + Y + +V Q + +V + V S + D + A
Sbjct: 62 IEV--------YQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHD-YQVAMQA 112
Query: 161 IREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIA 220
+ + L LSGGQ++ + I+ I + KL+ LDEPTS LD A V+S +
Sbjct: 113 LDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLI 172
Query: 221 KLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264
L Q T++ + HQP+ V + + LL+ Q FG
Sbjct: 173 DLAQSQ--NMTVVFTTHQPNQ-VVAIANKTLLLN-KQNFKFGET 212
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 6e-29
Identities = 57/224 (25%), Positives = 90/224 (40%), Gaps = 30/224 (13%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH----- 108
S+ L L+G + G +L ++GP+G+GK+TLL +AG T G I G
Sbjct: 11 AESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG----MTSGKGSIQFAGQPLEAW 66
Query: 109 -KKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ 167
LA AY++Q T V + K+ E + L
Sbjct: 67 SATKLAL-HRAYLSQQQTPPFATPVWHYLTLHQ-------HDKTR-TELLNDVAGALALD 117
Query: 168 DAMNTRIRRLSGGQKRRVSI-------SIEILTRPKLLFLDEPTSGLDSAASYYVMSRIA 220
D + +LSGG+ +RV + + + +LL LDEP + LD A + ++
Sbjct: 118 DKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILS 177
Query: 221 KLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264
L Q+ G I+ S H + + H LL G+ + G
Sbjct: 178 ALSQQ---GLAIVMSSHDLNH-TLRHAHRAWLLKGGKMLASGRR 217
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 3e-26
Identities = 45/195 (23%), Positives = 78/195 (40%), Gaps = 24/195 (12%)
Query: 41 KDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQT 100
++ V K S LE G + G ++ I+GP+G GKTT + LAG
Sbjct: 354 RETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTE--- 410
Query: 101 GKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVT 160
GK+ + T AY Q TV E + K +
Sbjct: 411 GKVEWDL--------TVAYKPQYIKAEYEGTVYELLSKIDS-------SKLNSNFYKTEL 455
Query: 161 IREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIA 220
++ +G+ D + + LSGG+ +RV+I+ +L + LDEP++ LD ++
Sbjct: 456 LKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLD----VEQRLAVS 511
Query: 221 KLGQR--DGIGRTII 233
+ + + +T +
Sbjct: 512 RAIRHLMEKNEKTAL 526
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 95.5 bits (238), Expect = 3e-21
Identities = 43/184 (23%), Positives = 81/184 (44%), Gaps = 25/184 (13%)
Query: 67 KPGHLLAIMGPSGSGKTTLLDALAGRL---GSDTRQTGKILINGH--KKALAYGTSAYV- 120
K G ++ I+GP+G+GKTT + LAG+L + + +I + Y
Sbjct: 115 KDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNG 174
Query: 121 -------TQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTR 173
Q L+ ++ + + K D+ + E ++E+ L++ ++
Sbjct: 175 EIRPVVKPQYVDLLPKAVKG---------KVRELLKKVDEVGKFEEVVKELELENVLDRE 225
Query: 174 IRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTII 233
+ +LSGG+ +RV+I+ +L + F DEP+S LD V I +L G+ ++
Sbjct: 226 LHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANE---GKAVL 282
Query: 234 ASIH 237
H
Sbjct: 283 VVEH 286
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 4e-26
Identities = 65/185 (35%), Positives = 93/185 (50%), Gaps = 24/185 (12%)
Query: 67 KPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH------KKALAY---GTS 117
K G ++I+G SGSGK+TLL L G L D GK+ + G +K L+
Sbjct: 28 KKGEFVSIIGASGSGKSTLLYIL-GLL--DAPTEGKVFLEGKEVDYTNEKELSLLRNRKL 84
Query: 118 AYVTQDDTLITTLTVKEAVYYSAQLQLP---DTMPKSDKKERAEVTIREMGLQDAMNTRI 174
+V Q LI LT E V +P PK + KER E + E+GL D ++ +
Sbjct: 85 GFVFQFHYLIPELTALENV------IVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKP 138
Query: 175 RRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIA 234
LSGG+++RV+I+ + P LLF DEPT LDSA + VM K+ + G +I+
Sbjct: 139 YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG---GTSIVM 195
Query: 235 SIHQP 239
H+
Sbjct: 196 VTHER 200
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 1e-25
Identities = 55/183 (30%), Positives = 90/183 (49%), Gaps = 15/183 (8%)
Query: 67 KPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHK------KALAY---GTS 117
K G ++IMGPSGSGK+T+L+ + G L D G++ I+ K L
Sbjct: 29 KEGEFVSIMGPSGSGKSTMLNII-GCL--DKPTEGEVYIDNIKTNDLDDDELTKIRRDKI 85
Query: 118 AYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAM-NTRIRR 176
+V Q LI LT E V + M ++++RA ++ L++ N + +
Sbjct: 86 GFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQ 145
Query: 177 LSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASI 236
LSGGQ++RV+I+ + P ++ D+PT LDS +M + KL + D G+T++
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEED--GKTVVVVT 203
Query: 237 HQP 239
H
Sbjct: 204 HDI 206
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 1e-25
Identities = 39/184 (21%), Positives = 77/184 (41%), Gaps = 24/184 (13%)
Query: 52 KKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKA 111
K +L G +L +MG +G+GKTTL+ LAG L D G+ + +
Sbjct: 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDE---GQDIPKLNVS- 416
Query: 112 LAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMN 171
Q TV++ + + Q + + + +V ++ + + D ++
Sbjct: 417 -------MKPQKIAPKFPGTVRQLFFKKIRGQF------LNPQFQTDV-VKPLRIDDIID 462
Query: 172 TRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQR--DGIG 229
++ LSGG+ +RV+I + + + +DEP++ LD +K+ +R
Sbjct: 463 QEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLD----SEQRIICSKVIRRFILHNK 518
Query: 230 RTII 233
+T
Sbjct: 519 KTAF 522
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 90.1 bits (224), Expect = 2e-19
Identities = 38/181 (20%), Positives = 70/181 (38%), Gaps = 20/181 (11%)
Query: 67 KPGHLLAIMGPSGSGKTTLLDALAGRL-----GSDTRQTGKILINGHKKALAYGTSAYVT 121
+PG +L ++G +G GK+T L LAG+ D + +I + + +
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160
Query: 122 QDD---------TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNT 172
+DD +K V +L + E + I+ + L++ +
Sbjct: 161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELL---KLRMEKSPEDVKRYIKILQLENVLKR 217
Query: 173 RIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTI 232
I +LSGG+ +R +I + + + DEP+S LD I L + +
Sbjct: 218 DIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAP---TKYV 274
Query: 233 I 233
I
Sbjct: 275 I 275
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 3e-25
Identities = 41/171 (23%), Positives = 66/171 (38%), Gaps = 20/171 (11%)
Query: 52 KKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKA 111
KK L G AK G ++ I+GP+G GKTT L G + +D G + +
Sbjct: 277 KKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADE---GSVTPEKQILS 333
Query: 112 LAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMN 171
Y Q TV++ L+ S E + + L +
Sbjct: 334 -------YKPQRIFPNYDGTVQQY------LENASKDALSTSSWFFEEVTKRLNLHRLLE 380
Query: 172 TRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKL 222
+ + LSGG+ +++ I+ + L LD+P+S LD +AK
Sbjct: 381 SNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLD----VEERYIVAKA 427
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 92.4 bits (230), Expect = 2e-20
Identities = 51/278 (18%), Positives = 106/278 (38%), Gaps = 20/278 (7%)
Query: 67 KPGHLLAIMGPSGSGKTTLLDALAGRLGSDT-RQTGKILINGHKKALAYGTSAYVTQD-- 123
K +L ++G +G GKTT+L LAG + + K+ + K ++
Sbjct: 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELY 82
Query: 124 -DTLITTLTVKEAVYYSAQLQLP--DTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGG 180
+ L ++ Y S L+ + + K D++ + + + + + N LSGG
Sbjct: 83 SNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGG 142
Query: 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPS 240
+R+ ++ +L + D+P+S LD +AK + + +I H
Sbjct: 143 GLQRLLVAASLLREADVYIFDQPSSYLD----VRERMNMAKAIRELLKNKYVIVVDHD-L 197
Query: 241 SEVFQLFHNLCLLSAGQTVYFGPATAANEFFAFNGFPCPTHQNPSDHFLKTINKDFQKEA 300
+ L + ++ +VY G + + A G N +L N + +
Sbjct: 198 IVLDYLTDLIHIIYGESSVY-GRVS--KSYAARVGI-----NNFLKGYLPAENMKIRPDE 249
Query: 301 EEGLADGEIPTEEVINILKRSYKSCGIYEQVGSQVAEI 338
+ + E+ ++ LK K I +++G +
Sbjct: 250 IKFMLK-EVSDLDLSKDLKTKMKWTKIIKKLGDFQLVV 286
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 4e-25
Identities = 50/218 (22%), Positives = 83/218 (38%), Gaps = 31/218 (14%)
Query: 18 ESSNKTANSLINVNEDDGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGP 77
K + V + +T+ L K S LE G K G ++ I+GP
Sbjct: 268 PYEIKFTKTGERVEIERETLVTYPRLV-------KDYGSFRLEVEPGEIKKGEVIGIVGP 320
Query: 78 SGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVY 137
+G GKTT + LAG GKI + T AY Q TV E +
Sbjct: 321 NGIGKTTFVKMLAGVEEPTE---GKIEWDL--------TVAYKPQYIKADYEGTVYELLS 369
Query: 138 YSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKL 197
K + ++ +G+ D + + LSGG+ +RV+I+ +L +
Sbjct: 370 KIDA-------SKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADI 422
Query: 198 LFLDEPTSGLDSAASYYVMSRIAKLGQR--DGIGRTII 233
LDEP++ LD +++ + + +T +
Sbjct: 423 YLLDEPSAYLD----VEQRLAVSRAIRHLMEKNEKTAL 456
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 92.0 bits (229), Expect = 4e-20
Identities = 39/169 (23%), Positives = 71/169 (42%), Gaps = 26/169 (15%)
Query: 67 KPGHLLAIMGPSGSGKTTLLDALAGRL---GSDTRQTGKILINGH--KKALAYGTSAYV- 120
K G ++ I+GP+G+GK+T + LAG+L + +I + Y
Sbjct: 45 KEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNG 104
Query: 121 -------TQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTR 173
Q LI ++ + + K+D+ + E ++ + L++ +
Sbjct: 105 EIRPVVKPQYVDLIPKAVKG---------KVIELLKKADETGKLEEVVKALELENVLERE 155
Query: 174 IRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKL 222
I+ LSGG+ +RV+I+ +L F DEP+S LD A+
Sbjct: 156 IQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLD----IRQRLNAARA 200
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 3e-24
Identities = 59/217 (27%), Positives = 104/217 (47%), Gaps = 25/217 (11%)
Query: 59 LEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSA 118
L+ + K G + AI+G +G GK+TL G L +G+IL + K + Y
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGIL---KPSSGRILFDN--KPIDYSRKG 78
Query: 119 ---------YVTQ--DDTLITTLTVKEAVYYSAQ-LQLPDTMPKSDKKERAEVTIREMGL 166
V Q D+ L + +V + V + A ++LP + + ++R + ++ G+
Sbjct: 79 IMKLRESIGIVFQDPDNQLFSA-SVYQDVSFGAVNMKLP----EDEIRKRVDNALKRTGI 133
Query: 167 QDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRD 226
+ + LS GQK+RV+I+ ++ PK+L LDEPT+GLD +M + ++ +
Sbjct: 134 EHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKEL 193
Query: 227 GIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263
GI TII + H V N+ ++ G+ + G
Sbjct: 194 GI--TIIIATHDI-DIVPLYCDNVFVMKEGRVILQGN 227
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 98.8 bits (247), Expect = 1e-23
Identities = 66/283 (23%), Positives = 112/283 (39%), Gaps = 39/283 (13%)
Query: 49 SNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH 108
G LE+++ G L + G +GSGK+TLL +AG + +G +L +G
Sbjct: 13 HRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLI---EPTSGDVLYDGE 69
Query: 109 KKALAY-----GTSAYVTQ--DDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTI 161
+K G Q +D V + V ++ + PD D + +
Sbjct: 70 RKKGYEIRRNIG---IAFQYPEDQFFAE-RVFDEVAFAVKNFYPDR----DPVPLVKKAM 121
Query: 162 REMGLQDAMNTRIR---RLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSR 218
+GL D + + R LSGG+KRRV+I+ I+ P +L LDEP GLD ++
Sbjct: 122 EFVGL-DFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRI 180
Query: 219 IAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANEFFAFNGFPC 278
+ K G+T+I H V + +L G+ V+ G EF
Sbjct: 181 VEKWKTL---GKTVILISHDI-ETVINHVDRVVVLEKGKKVFDGT---RMEFL------- 226
Query: 279 PTHQNPSDHFLKTINKDFQKEAEEGLADGEIPTEEVINILKRS 321
+ F + ++ +G + +E++ + S
Sbjct: 227 ---EKYDPRFFTSKMLVMRRLVLKGEDPFSMSDDELLERVCNS 266
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 95.1 bits (237), Expect = 2e-22
Identities = 53/197 (26%), Positives = 89/197 (45%), Gaps = 24/197 (12%)
Query: 45 VTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKIL 104
V I +GK LE++ G + I+GP+GSGKTTLL A++G L G I
Sbjct: 7 VGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLPYS----GNIF 61
Query: 105 ING---HKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTI 161
ING K S + + + +TV + VY +L K ++ +
Sbjct: 62 INGMEVRKIRNYIRYSTNLPEAYEI--GVTVNDIVYLYEEL-------KGLDRDLFLEML 112
Query: 162 REMGLQDAMNTR-IRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIA 220
+ + L + + R + +LS GQ V S+ + ++P+++ LDEP +D+A + + I
Sbjct: 113 KALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIK 172
Query: 221 KLGQRDGIGRTIIASIH 237
+ G+ I H
Sbjct: 173 EY------GKEGILVTH 183
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 85.6 bits (213), Expect = 4e-19
Identities = 55/193 (28%), Positives = 92/193 (47%), Gaps = 30/193 (15%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTR----QTGKILINGHKKALA 113
IL D++ A+P ++A GPSG GK+T+ L R G+I I+G
Sbjct: 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLL-------ERFYQPTAGEITIDGQPIDNI 69
Query: 114 YGTS-----AYVTQDDTLITTLTVKEAVYYSAQLQLPDT-MPKSDKKERAEVTIREMGLQ 167
+ +V+QD ++ T++E + Y + D + + A + +
Sbjct: 70 SLENWRSQIGFVSQDSAIMAG-TIRENLTYGLEGDYTDEDLWQVLDLAFARSFV--ENMP 126
Query: 168 DAMNTRI--R--RLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLG 223
D +NT + R ++SGGQ++R++I+ L PK+L LDE T+ LDS + V + L
Sbjct: 127 DQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM 186
Query: 224 QRDGIGRT--IIA 234
+ GRT +IA
Sbjct: 187 K----GRTTLVIA 195
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 85.3 bits (212), Expect = 6e-19
Identities = 51/194 (26%), Positives = 83/194 (42%), Gaps = 34/194 (17%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTR---QTGKILINGH------ 108
L+ + + G A++G +GSGK+T+ L R G I I G
Sbjct: 35 TLKSINFFIPSGTTCALVGHTGSGKSTIAKLL-------YRFYDAEGDIKIGGKNVNKYN 87
Query: 109 KKAL--AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGL 166
+ ++ G V QD L T+K + Y + + K+ K + I L
Sbjct: 88 RNSIRSIIG---IVPQDTILFNE-TIKYNILYGKLDATDEEVIKATKSAQLYDFI--EAL 141
Query: 167 QDAMNTRI--R--RLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKL 222
+T + + +LSGG+++R++I+ +L PK++ DE TS LDS Y + L
Sbjct: 142 PKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDL 201
Query: 223 GQRDGIGRT--IIA 234
+ RT IIA
Sbjct: 202 RK----NRTLIIIA 211
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 85.7 bits (213), Expect = 9e-19
Identities = 54/203 (26%), Positives = 89/203 (43%), Gaps = 51/203 (25%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTR----QTGKILINGH----- 108
L+D++ PG LA++GPSG+GK+T+L L R +G I I+G
Sbjct: 69 TLQDVSFTVMPGQTLALVGPSGAGKSTILRLLF-------RFYDISSGCIRIDGQDISQV 121
Query: 109 -----KKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKE------RA 157
+ + V QD L T+ + + Y + E A
Sbjct: 122 TQASLRSHIGV-----VPQDTVLFND-TIADNIRYG--------RVTAGNDEVEAAAQAA 167
Query: 158 EVTIREMGLQDAMNTRI--R--RLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASY 213
+ M + T++ R +LSGG+K+RV+I+ IL P ++ LDE TS LD++
Sbjct: 168 GIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNER 227
Query: 214 YVMSRIAKLGQRDGIGRT--IIA 234
+ + +AK+ RT ++A
Sbjct: 228 AIQASLAKVCA----NRTTIVVA 246
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 86.1 bits (214), Expect = 1e-18
Identities = 44/161 (27%), Positives = 77/161 (47%), Gaps = 15/161 (9%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA 113
G + + ++ + G ++ ++GPSGSGKTT+L +AG G + I G +
Sbjct: 26 GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTK---GDVWIGGKR---V 79
Query: 114 YGTSAY------VTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ 167
V Q+ L +TV + V + + + +PK + R +R M L+
Sbjct: 80 TDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRFMRLE 136
Query: 168 DAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208
N LSGGQ++RV+++ + RP++L DEP + +D
Sbjct: 137 SYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAID 177
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 83.7 bits (208), Expect = 2e-18
Identities = 38/148 (25%), Positives = 76/148 (51%), Gaps = 21/148 (14%)
Query: 69 GHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING--------HKKALAYGTSAYV 120
++GP+G+GK+ L+ +AG + D G++ +NG ++ + G V
Sbjct: 24 RDYCVLLGPTGAGKSVFLELIAGIVKPDR---GEVRLNGADITPLPPERRGI--GF---V 75
Query: 121 TQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGG 180
QD L L+V + Y + + + ++ R ++G+ ++ + RLSGG
Sbjct: 76 PQDYALFPHLSVYRNIAYGLR-----NVERVERDRRVREMAEKLGIAHLLDRKPARLSGG 130
Query: 181 QKRRVSISIEILTRPKLLFLDEPTSGLD 208
+++RV+++ ++ +P+LL LDEP S +D
Sbjct: 131 ERQRVALARALVIQPRLLLLDEPLSAVD 158
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 81.4 bits (202), Expect = 9e-18
Identities = 53/206 (25%), Positives = 93/206 (45%), Gaps = 57/206 (27%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTR----QTGKILINGHKKALA 113
IL+++ K G ++ I+G SGSGK+TL + R + G++LI+GH ALA
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQ-------RFYIPENGQVLIDGHDLALA 76
Query: 114 YGTS-----AYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIRE----- 163
V QD+ L+ ++ + + + +++ +
Sbjct: 77 DPNWLRRQVGVVLQDNVLLNR-SIIDNISLA----------------NPGMSVEKVIYAA 119
Query: 164 ---------MGLQDAMNTRI----RRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSA 210
L++ NT + LSGGQ++R++I+ ++ PK+L DE TS LD
Sbjct: 120 KLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 179
Query: 211 ASYYVMSRIAKLGQRDGIGRT--IIA 234
+ + +M + K+ + GRT IIA
Sbjct: 180 SEHVIMRNMHKICK----GRTVIIIA 201
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 85.1 bits (210), Expect = 9e-18
Identities = 42/174 (24%), Positives = 67/174 (38%), Gaps = 28/174 (16%)
Query: 40 WKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQ 99
+ ++ K +L K I GP+G GK+TL+ A+A Q
Sbjct: 436 LCNCEFSLAYGAKI----LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANG------Q 485
Query: 100 TGKILINGHKKALAYGTSAYVTQD-DTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAE 158
+ + YV D D + +V + V+ S KE +
Sbjct: 486 VDGFPTQEECR------TVYVEHDIDGTHSDTSVLDFVFESGV----------GTKEAIK 529
Query: 159 VTIREMGLQDAM-NTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAA 211
+ E G D M I LSGG K +++++ +L +L LDEPT+ LD+
Sbjct: 530 DKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVN 583
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 58.5 bits (141), Expect = 3e-09
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 142 LQLPDTMPKSDKKERAEVTIREMGL--QDAMNTRIRRLSGGQKRRVSISIEILTRPKLLF 199
L + ++ E +GL + ++RIR LSGGQK ++ ++ RP L+
Sbjct: 865 EALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIV 924
Query: 200 LDEPTSGLDSAA 211
LDEPT+ LD +
Sbjct: 925 LDEPTNYLDRDS 936
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 45.0 bits (106), Expect = 5e-05
Identities = 24/129 (18%), Positives = 50/129 (38%), Gaps = 13/129 (10%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTS 117
+ D+ +A++GP+G+GK+TL++ L G L +G++ + + +
Sbjct: 688 QITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPT---SGEVYTHENCRI------ 738
Query: 118 AYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRL 177
AY+ Q + + Q + +E + R++ DA
Sbjct: 739 AYIKQHAFAHIESHLDKTPSEYIQ----WRFQTGEDRETMDRANRQINENDAEAMNKIFK 794
Query: 178 SGGQKRRVS 186
G RR++
Sbjct: 795 IEGTPRRIA 803
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 83.4 bits (207), Expect = 9e-18
Identities = 47/164 (28%), Positives = 79/164 (48%), Gaps = 17/164 (10%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA 113
++ +L D++ PG +L I+G SG GKTTLL LAG + +G+I ++G K +
Sbjct: 15 QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAG---FEQPDSGEISLSG--KTIF 69
Query: 114 YGTSA---------YVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREM 164
+ Y+ Q+ L LTV + Y + +++R E +
Sbjct: 70 SKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG---KGRTAQERQRIEAMLELT 126
Query: 165 GLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208
G+ + LSGGQ++R +++ + P+L+ LDEP S LD
Sbjct: 127 GISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALD 170
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 82.8 bits (205), Expect = 6e-17
Identities = 53/194 (27%), Positives = 90/194 (46%), Gaps = 33/194 (17%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTR----QTGKILINGH---KK 110
+L+ L+ K G LA++G SG GK+T++ L R G + ++G +
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLE-------RFYDPMAGSVFLDGKEIKQL 1100
Query: 111 ALAY--GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERA--EVTIRE--M 164
+ + V+Q+ L ++ E + Y + ++ RA E I +
Sbjct: 1101 NVQWLRAQLGIVSQEPILFDC-SIAENIAYG----DNSRVVSYEEIVRAAKEANIHQFID 1155
Query: 165 GLQDAMNTRI----RRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIA 220
L D NTR+ +LSGGQK+R++I+ ++ +P +L LDE TS LD+ + V +
Sbjct: 1156 SLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALD 1215
Query: 221 KLGQRDGIGRTIIA 234
K + GRT I
Sbjct: 1216 KARE----GRTCIV 1225
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 1e-15
Identities = 57/185 (30%), Positives = 90/185 (48%), Gaps = 19/185 (10%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHK-KALAY-- 114
IL+ L K G +A++G SG GK+T + L RL G + I+G + +
Sbjct: 405 ILKGLNLKVKSGQTVALVGNSGCGKSTTV-QLMQRLYDPLD--GMVSIDGQDIRTINVRY 461
Query: 115 --GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNT 172
V+Q+ L T T+ E + Y + D + K+ K+ A I M L +T
Sbjct: 462 LREIIGVVSQEPVLFAT-TIAENIRYGREDVTMDEIEKAVKEANAYDFI--MKLPHQFDT 518
Query: 173 RI----RRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGI 228
+ +LSGGQK+R++I+ ++ PK+L LDE TS LD+ + V + + K +
Sbjct: 519 LVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKARE---- 574
Query: 229 GRTII 233
GRT I
Sbjct: 575 GRTTI 579
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 1e-16
Identities = 51/174 (29%), Positives = 83/174 (47%), Gaps = 24/174 (13%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA 113
G +L+ ++ A+ G +++I+G SGSGK+T L + L + G I++NG L
Sbjct: 17 GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCI-NFL--EKPSEGAIIVNGQNINLV 73
Query: 114 YGTSAYVTQDDT------------------LITTLTVKEAVYYSAQLQLPDTMPKSDKKE 155
+ D L + +TV E V A +Q+ + K D +E
Sbjct: 74 RDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVME-APIQVLG-LSKHDARE 131
Query: 156 RAEVTIREMGLQDAMNTRI-RRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208
RA + ++G+ + + LSGGQ++RVSI+ + P +L DEPTS LD
Sbjct: 132 RALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALD 185
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 79.1 bits (196), Expect = 2e-16
Identities = 45/150 (30%), Positives = 79/150 (52%), Gaps = 22/150 (14%)
Query: 67 KPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING--------HKKALAYGTSA 118
+ G I+GP+G+GKT L+ +AG D+ G+IL++G K +A+
Sbjct: 24 ESGEYFVILGPTGAGKTLFLELIAGFHVPDS---GRILLDGKDVTDLSPEKHDIAF---- 76
Query: 119 YVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLS 178
V Q+ +L + VK+ + + M K +R T R++ ++ ++ LS
Sbjct: 77 -VYQNYSLFPHMNVKKNLEF------GMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLS 129
Query: 179 GGQKRRVSISIEILTRPKLLFLDEPTSGLD 208
GG+++RV+++ ++T PK+L LDEP S LD
Sbjct: 130 GGEQQRVALARALVTNPKILLLDEPLSALD 159
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 76.9 bits (190), Expect = 5e-16
Identities = 46/172 (26%), Positives = 81/172 (47%), Gaps = 32/172 (18%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA 113
GS +L+ + + + G ++ ++GPSGSGK+T L L L + G+I+I+G
Sbjct: 35 GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCL-NLL--EDFDEGEIIIDGIN---- 87
Query: 114 YGTSAYVTQDDTLITT-----------------LTVKEAVYYSAQLQLPDTMPKSDKKER 156
+ DT + +TV + A +++ P+ + +
Sbjct: 88 ------LKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITL-APMKVRK-WPREKAEAK 139
Query: 157 AEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208
A + ++GL+D + LSGGQ +RV+I+ + PK++ DEPTS LD
Sbjct: 140 AMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALD 191
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 79.2 bits (196), Expect = 6e-16
Identities = 50/192 (26%), Positives = 89/192 (46%), Gaps = 28/192 (14%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTR----QTGKILINGH----- 108
L ++ G +A++G SGSGK+T+ + TR +G I ++GH
Sbjct: 358 ALSHVSFSIPQGKTVALVGRSGSGKSTIANLF-------TRFYDVDSGSICLDGHDVRDY 410
Query: 109 -KKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDT-MPKSDKKERAEVTIREM-- 164
L A V+Q+ L T+ + Y+A+ + + ++ ++ A I M
Sbjct: 411 KLTNL-RRHFALVSQNVHLFND-TIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQ 468
Query: 165 GLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQ 224
GL + LSGGQ++RV+I+ +L +L LDE TS LD+ + + + + +L +
Sbjct: 469 GLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK 528
Query: 225 RDGIGRT--IIA 234
+T +IA
Sbjct: 529 ----NKTVLVIA 536
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 1e-15
Identities = 50/204 (24%), Positives = 90/204 (44%), Gaps = 52/204 (25%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTR----QTGKILINGH----- 108
L ++ G +A++G SGSGK+T+ + TR G IL++GH
Sbjct: 358 ALRNINLKIPAGKTVALVGRSGSGKSTIASLI-------TRFYDIDEGHILMDGHDLREY 410
Query: 109 -KKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVT------- 160
+L A V+Q+ L TV + Y+ ++++ R ++
Sbjct: 411 TLASL-RNQVALVSQNVHLFND-TVANNIAYA----------RTEEYSREQIEEAARMAY 458
Query: 161 ----IREMGLQDAMNTRI----RRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAAS 212
I + + ++T I LSGGQ++R++I+ +L +L LDE TS LD+ +
Sbjct: 459 AMDFI--NKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESE 516
Query: 213 YYVMSRIAKLGQRDGIGRT--IIA 234
+ + + +L + RT +IA
Sbjct: 517 RAIQAALDELQK----NRTSLVIA 536
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 76.0 bits (188), Expect = 1e-15
Identities = 51/193 (26%), Positives = 86/193 (44%), Gaps = 28/193 (14%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHK-KALAY-- 114
+L+ LT PG + A++GP+GSGK+T+ AL L GK+L++G +
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVA-ALLQNL-YQP-TGGKVLLDGEPLVQYDHHY 90
Query: 115 --GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVT-----IREMGLQ 167
A V Q+ L + +E + Y L T + A + I G
Sbjct: 91 LHTQVAAVGQEPLLFGR-SFRENIAYG----LTRTPTMEEITAVAMESGAHDFI--SGFP 143
Query: 168 DAMNTRI----RRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLG 223
+T + +LSGGQ++ V+++ ++ +P+LL LD TS LD+ V + +
Sbjct: 144 QGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYES- 202
Query: 224 QRDGIGRT--IIA 234
+ RT +I
Sbjct: 203 -PEWASRTVLLIT 214
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 76.4 bits (187), Expect = 6e-15
Identities = 85/547 (15%), Positives = 153/547 (27%), Gaps = 179/547 (32%)
Query: 4 LGDSI-TETNE-ALEMESSNKTANSLINVNEDDGVFLTWKDLTVTIVSNGKKGSSSILED 61
L I TE + ++ + + L N N+ VF V+ + K ++LE
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ---VF---AKYNVSRLQPYLKLRQALLEL 147
Query: 62 LTGYAKPGHLLAIMGPSGSGKTTL-LDALAGRLGSDTRQTGKILINGHKKALAYGTSAYV 120
+P + I G GSGKT + LD + K+ +
Sbjct: 148 -----RPAKNVLIDGVLGSGKTWVALDVC-----LSYKVQCKMDFKIF-----WLNLKNC 192
Query: 121 TQDDTLITTLTVKEAVYY---SAQLQLPDTM-----PKSDKKERAEVTIREMGLQ----- 167
+T++ L + + Y D + ++ +
Sbjct: 193 NSPETVLEML---QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249
Query: 168 ----------DAMN--------TR----IRRLSGGQKRRVSI--SIEILTRPKLL----- 198
+A N TR LS +S+ LT ++
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 199 FLDEPTSGLDSAA---SYYVMSRIAKLGQRDGIGR-------------TII-ASI-HQPS 240
+LD L + +S IA+ RDG+ TII +S+
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAES-IRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 241 SEVFQLFHNLCLLSAGQTVYFGPATAANEFFAFNGFPCPTHQN-PSDHFLKTINKDFQKE 299
+E ++F F P + P+ +
Sbjct: 369 AEYRKMFD--------------------RLSVF-----PPSAHIPT----ILL------- 392
Query: 300 AEEGLADGEIPTEEVINILKRSYKSCGIYEQVGSQVAEICKQNYGTLEKKRKHASFLTQC 359
L ++ +V+ ++ + +K + +Q I + +
Sbjct: 393 ---SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI----PSIYLELKVKLENEYAL 445
Query: 360 HVLTRRSFVNMYR--------DL------GY-YWFRLAIY----ISMALGLATLFSNLGT 400
H RS V+ Y DL Y Y + + I TLF +
Sbjct: 446 H----RSIVDHYNIPKTFDSDDLIPPYLDQYFYSH-IG-HHLKNIEHP-ERMTLFRMVFL 498
Query: 401 GYRSIQ-----------ARGSL------LMFVASFITFMTIGGFPSFVEDMKKCLFLWQI 443
+R ++ A GS+ L F +I + V + FL +I
Sbjct: 499 DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC-DNDPKYERLVNAILD--FLPKI 555
Query: 444 -RVLVRY 449
L+
Sbjct: 556 EENLICS 562
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.8 bits (97), Expect = 5e-04
Identities = 56/398 (14%), Positives = 109/398 (27%), Gaps = 91/398 (22%)
Query: 1 MSPLGDSITETNEALEMESSNKT-ANSLI---NVNE-------DDG--VFLTWKDLTVT- 46
S + I L +K N L+ NV + + LT + VT
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD 279
Query: 47 IVSNGKKGSSSILEDLTGYAKP---GHLLAIMG------PSGSGKTT-LLDALAGRLGSD 96
+S S+ LL + P T ++ D
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339
Query: 97 TRQTGKIL--INGHKKALAYGTS-----------AY----VTQDDTLIT--TLTV--KEA 135
T +N K +S + V I L++ +
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399
Query: 136 VYYSAQLQLPDTMPKSD-KKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTR 194
+ + + S +K+ E TI + + +++ + R SI ++
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY--LELKVKLENEYALHR-SI-VDHYNI 455
Query: 195 PKLLFLDEPTSGLDSAASY---YVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLC 251
PK D+ Y ++ + + E LF +
Sbjct: 456 PKTFDSDDLI--PPYLDQYFYSHIGHHLKNIEH----------------PERMTLFRMVF 497
Query: 252 L--------LSAGQTVYFGPATAAN---EFFAFNGFPCPTHQNPSDHFLKTINKDFQKEA 300
L + T + + N + + + C + + I DF +
Sbjct: 498 LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY-ERLVNAI-LDFLPKI 555
Query: 301 EEGLADGEIPTEEVINILKRS--YKSCGIYEQVGSQVA 336
EE L + ++L+ + + I+E+ QV
Sbjct: 556 EENLICSKY-----TDLLRIALMAEDEAIFEEAHKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.0 bits (95), Expect = 8e-04
Identities = 15/103 (14%), Positives = 38/103 (36%), Gaps = 20/103 (19%)
Query: 287 HFLKTINKDFQ-KEAEEGLADGEIPTEEVINILK------RSYKSCGIYEQVGSQ----- 334
F +F K+ ++ + EE+ +I+ + + +
Sbjct: 24 VFEDAFVDNFDCKDVQDMPK-SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF 82
Query: 335 VAEICKQNYG----TLEKKRKHASFLTQCHVLTRRSFVNMYRD 373
V E+ + NY ++ +++ S +T+ ++ R +Y D
Sbjct: 83 VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD---RLYND 122
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 73.3 bits (181), Expect = 6e-15
Identities = 40/186 (21%), Positives = 76/186 (40%), Gaps = 28/186 (15%)
Query: 67 KPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAY-VT---- 121
G + I+GP+GSGK+TL++ + G L +D G++ +
Sbjct: 31 NKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDIT---NKEPAELYHYGI 84
Query: 122 ----QDDTLITTLTVKEAV----YYSAQLQLPDTMPKSDKK------ERAEVTIREMGLQ 167
Q + +TV E + + L K E+A + + L
Sbjct: 85 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLS 144
Query: 168 DAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDG 227
+ + LSGGQ + V I ++T PK++ +DEP +G+ ++ + + + +L +
Sbjct: 145 HLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK-- 202
Query: 228 IGRTII 233
G T +
Sbjct: 203 -GITFL 207
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 7e-15
Identities = 56/232 (24%), Positives = 107/232 (46%), Gaps = 27/232 (11%)
Query: 45 VTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRL--GSDTRQTGK 102
+T V + + L +++ + G + ++G SG+GK+TL+ R + G
Sbjct: 30 ITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLI-----RCVNLLERPTEGS 84
Query: 103 ILINGH------KKALAY-----GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKS 151
+L++G + L G + Q L+++ TV V +L PK
Sbjct: 85 VLVDGQELTTLSESELTKARRQIGM---IFQHFNLLSSRTVFGNVALPLELD---NTPKD 138
Query: 152 DKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAA 211
+ K R + +GL D ++ LSGGQK+RV+I+ + + PK+L D+ TS LD A
Sbjct: 139 EVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPAT 198
Query: 212 SYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263
+ ++ + + +R G+ TI+ H+ V ++ + ++S G+ +
Sbjct: 199 TRSILELLKDINRRLGL--TILLITHEMDV-VKRICDCVAVISNGELIEQDT 247
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 74.1 bits (183), Expect = 2e-14
Identities = 60/206 (29%), Positives = 90/206 (43%), Gaps = 45/206 (21%)
Query: 52 KKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTR----QTGKILING 107
+ IL+D+ + G +A +G SG GK+TL++ + R +G+ILI+G
Sbjct: 350 NDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLI-------PRFYDVTSGQILIDG 402
Query: 108 H------KKAL--AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSD------- 152
H +L G V QD+ L + TVKE + P +D
Sbjct: 403 HNIKDFLTGSLRNQIG---LVQQDNILFSD-TVKENILLGR----PTA---TDEEVVEAA 451
Query: 153 KKERAEVTIREM--GLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSA 210
K A I + G + R +LSGGQK+R+SI+ L P +L LDE TS LD
Sbjct: 452 KMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLE 511
Query: 211 ASYYVMSRIAKLGQRDGIGRT--IIA 234
+ + + L + RT I+A
Sbjct: 512 SESIIQEALDVLSK----DRTTLIVA 533
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 6e-14
Identities = 53/192 (27%), Positives = 88/192 (45%), Gaps = 20/192 (10%)
Query: 52 KKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKA 111
KKG L+++ + G I+GPSG+GKTT + +AG L + TG++ + A
Sbjct: 14 KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAG-LDVPS--TGELYFDDRLVA 70
Query: 112 LAYGTS--------AYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIRE 163
V Q L LT E + + M K + ++R E +
Sbjct: 71 SNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKI 127
Query: 164 MGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSR--IAK 221
+ + +N R LSG Q++RV+++ ++ P LL LDEP S LD A +R + +
Sbjct: 128 LDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLD--ARMRDSARALVKE 185
Query: 222 LGQRDGIGRTII 233
+ R +G T++
Sbjct: 186 VQSR--LGVTLL 195
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 2e-12
Identities = 47/193 (24%), Positives = 78/193 (40%), Gaps = 42/193 (21%)
Query: 32 EDDGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAG 91
+++ T SN + +L+D+ + G LLA+ G +G+GKT+LL + G
Sbjct: 27 QNNNNRKTSNGDDSLSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG 86
Query: 92 RLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKE-------------AVYY 138
L GKI + G ++ +Q ++ I T+KE +V
Sbjct: 87 EL---EPSEGKIKHS--------GRISFCSQ-NSWIMPGTIKENIIGVSYDEYRYRSVIK 134
Query: 139 SAQLQLPD--TMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPK 196
+ QL+ D + D + E G+ LSGGQ+ R+S++ +
Sbjct: 135 ACQLE-EDISKFAEKDNIV-----LGEGGIT---------LSGGQRARISLARAVYKDAD 179
Query: 197 LLFLDEPTSGLDS 209
L LD P LD
Sbjct: 180 LYLLDSPFGYLDV 192
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 4e-12
Identities = 45/173 (26%), Positives = 73/173 (42%), Gaps = 43/173 (24%)
Query: 53 KGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL 112
+G + +L+D+ + G LLA+ G +G+GKT+LL + G L GKI +
Sbjct: 18 EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL---EPSEGKIKHS------ 68
Query: 113 AYGTSAYVTQDDTLITTLTVKE--------------AVYYSAQLQLPD--TMPKSDKKER 156
G ++ +Q + I T+KE +V + QL+ D + D
Sbjct: 69 --GRISFCSQ-FSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLE-EDISKFAEKDNIV- 123
Query: 157 AEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDS 209
+ E G+ LSGGQ+ R+S++ + L LD P LD
Sbjct: 124 ----LGEGGIT---------LSGGQRARISLARAVYKDADLYLLDSPFGYLDV 163
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 63.7 bits (156), Expect = 8e-12
Identities = 47/172 (27%), Positives = 75/172 (43%), Gaps = 41/172 (23%)
Query: 53 KGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL 112
+ L +T G L+A++G G GK++LL AL + + G + I
Sbjct: 15 RSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEM---DKVEGHVAIK------ 65
Query: 113 AYGTSAYVTQDDTLITTLTVKE---------AVYYSAQLQ----LPD--TMPKSDKKERA 157
G+ AYV Q I +++E YY + +Q LPD +P D+ E
Sbjct: 66 --GSVAYVPQ-QAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTE-- 120
Query: 158 EVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDS 209
I E G+ LSGGQK+RVS++ + + + D+P S +D+
Sbjct: 121 ---IGEKGVN---------LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDA 160
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 3e-11
Identities = 52/209 (24%), Positives = 107/209 (51%), Gaps = 22/209 (10%)
Query: 12 NEALEMESSNKTANSLINVNEDDGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHL 71
E L + + + A++ + + +G ++++++ + + +L + KPG L
Sbjct: 317 LEVLNEKPAIEEADNALALPNVEGS-VSFENVEFRY----FENTDPVLSGVNFSVKPGSL 371
Query: 72 LAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH------KKALAYGTSAYVTQDDT 125
+A++G +GSGK+TL++ L RL D + G++ ++ K L G + V Q+
Sbjct: 372 VAVLGETGSGKSTLMN-LIPRL-IDP-ERGRVEVDELDVRTVKLKDL-RGHISAVPQETV 427
Query: 126 LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRR----LSGGQ 181
L + T+KE + + + D + ++ K + I + + ++R+ R SGGQ
Sbjct: 428 LFSG-TIKENLKWGREDATDDEIVEAAKIAQIHDFIISL--PEGYDSRVERGGRNFSGGQ 484
Query: 182 KRRVSISIEILTRPKLLFLDEPTSGLDSA 210
K+R+SI+ ++ +PK+L LD+ TS +D
Sbjct: 485 KQRLSIARALVKKPKVLILDDCTSSVDPI 513
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 1e-10
Identities = 52/202 (25%), Positives = 93/202 (46%), Gaps = 49/202 (24%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA 113
G+ + L ++ K G +A++GPSGSGK+TLL +AG + T +GKI
Sbjct: 14 GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAG-IYKPT--SGKIYF-------- 62
Query: 114 YGTSAYVTQDDTLITTLTVKE----------AVY----------YSAQLQLPDTMPKSDK 153
D+ +T L K+ A+Y + +L+ P+ +
Sbjct: 63 ---------DEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELR---KAPREEI 110
Query: 154 KERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASY 213
++ + + + +N +LSGGQ++RV+I+ ++ P++L LDEP S LD A
Sbjct: 111 DKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLD--ALL 168
Query: 214 YVMSR--IAKLGQRDGIGRTII 233
+ R + +L + +G T +
Sbjct: 169 RLEVRAELKRLQKE--LGITTV 188
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 1e-10
Identities = 52/172 (30%), Positives = 87/172 (50%), Gaps = 39/172 (22%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTR----QTGKILINGH----- 108
+L+D+T + KPG +A++GP+GSGKTT+++ L R G+IL++G
Sbjct: 370 VLKDITFHIKPGQKVALVGPTGSGKTTIVNLL-------MRFYDVDRGQILVDGIDIRKI 422
Query: 109 -KKAL--AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSD-------KKERAE 158
+ +L + G V Q DT++ + TVKE + Y P +D K ++
Sbjct: 423 KRSSLRSSIG---IVLQ-DTILFSTTVKENLKYGN----PGA---TDEEIKEAAKLTHSD 471
Query: 159 VTIREM--GLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLD 208
I+ + G + + LS GQ++ ++I+ L PK+L LDE TS +D
Sbjct: 472 HFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVD 523
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 3e-10
Identities = 51/202 (25%), Positives = 92/202 (45%), Gaps = 49/202 (24%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA 113
G ++ ++ K G +A++GPSG GKTT L LAG + T G+I
Sbjct: 14 GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAG-IYKPTS--GEIYF-------- 62
Query: 114 YGTSAYVTQDDTLITTLTVKE----------AVY----------YSAQLQLPDTMPKSDK 153
DD L+ + K A+Y + + + + K +
Sbjct: 63 ---------DDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRAR---RISKDEV 110
Query: 154 KERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASY 213
++R R++ + + ++ + +LSGGQ++RV+++ ++ +PK+L DEP S LD A+
Sbjct: 111 EKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLD--ANL 168
Query: 214 YVMSR--IAKLGQRDGIGRTII 233
++ R I L Q +G T +
Sbjct: 169 RMIMRAEIKHLQQE--LGITSV 188
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 6e-10
Identities = 55/191 (28%), Positives = 93/191 (48%), Gaps = 21/191 (10%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHK---K 110
G + + +++ K G + ++GPSG GKTT L +AG L +R G+I I
Sbjct: 14 GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAG-LEEPSR--GQIYIGDKLVADP 70
Query: 111 ALAYGTS------AYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREM 164
A V Q L +TV + + + +L+ +P+ + +R +
Sbjct: 71 EKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELL 127
Query: 165 GLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSR--IAKL 222
GL + +N + R LSGGQ++RV++ I+ +P++ +DEP S LD A V R + KL
Sbjct: 128 GLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLD--AKLRVRMRAELKKL 185
Query: 223 GQRDGIGRTII 233
++ +G T I
Sbjct: 186 QRQ--LGVTTI 194
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 2e-09
Identities = 55/202 (27%), Positives = 87/202 (43%), Gaps = 49/202 (24%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA 113
G+ + + L K G L ++GPSG GKTT L +AG L T G+I
Sbjct: 22 GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG-LEEPT--EGRIYF-------- 70
Query: 114 YGTSAYVTQDDTLITTLTVKE----------AVY----------YSAQLQLPDTMPKSDK 153
D +T L K+ AV+ + +++ PK +
Sbjct: 71 ---------GDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEI 118
Query: 154 KERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASY 213
+R + +++ +N +LSGGQ++RV+++ I+ P +L +DEP S LD A
Sbjct: 119 DKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD--AKL 176
Query: 214 YVMSR--IAKLGQRDGIGRTII 233
V R I KL Q+ + T I
Sbjct: 177 RVAMRAEIKKLQQK--LKVTTI 196
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 9e-09
Identities = 58/217 (26%), Positives = 84/217 (38%), Gaps = 51/217 (23%)
Query: 20 SNKTANSLINVNEDDGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSG 79
S+ + + L+ KDL V++ K IL L+ PG + AIMGP+G
Sbjct: 3 SSHHHHHSSGLVPRGSHMLSIKDLHVSV--EDKA----ILRGLSLDVHPGEVHAIMGPNG 56
Query: 80 SGKTTLLDALAGRLGSDTRQTGKILING--------HKKALA-------Y-----GTSAY 119
SGK+TL LAGR + G + G +A Y G
Sbjct: 57 SGKSTLSATLAGREDYEVTG-GTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPG---- 111
Query: 120 VTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRL-- 177
V+ L T L + L D ++K I + + + + T R +
Sbjct: 112 VSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEK------IALLKMPEDLLT--RSVNV 163
Query: 178 --SGGQKRRVSISIEIL----TRPKLLFLDEPTSGLD 208
SGG+K+R +IL P+L LDE SGLD
Sbjct: 164 GFSGGEKKRN----DILQMAVLEPELCILDESDSGLD 196
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 53.3 bits (129), Expect = 3e-08
Identities = 48/204 (23%), Positives = 76/204 (37%), Gaps = 65/204 (31%)
Query: 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDT 97
L +DL +I +G+ IL+ + G + A+MGP+G+GK+TL LAG
Sbjct: 4 LEIRDLWASI--DGET----ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTV 57
Query: 98 RQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQL------QLPDTMP-- 149
+ G+IL++G ++ I L+ E A+ Q P +P
Sbjct: 58 ER-GEILLDG--------------EN---ILELSPDE----RARKGLFLAFQYPVEVPGV 95
Query: 150 ------KSDKKERAEVTIREMGLQDAMNTRIRRL---------------SGGQKRRVSIS 188
+ + + + + + L SGG+K+R
Sbjct: 96 TIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRN--- 152
Query: 189 IEIL----TRPKLLFLDEPTSGLD 208
EIL P LDE SGLD
Sbjct: 153 -EILQLLVLEPTYAVLDETDSGLD 175
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 5e-08
Identities = 40/176 (22%), Positives = 73/176 (41%), Gaps = 45/176 (25%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTS 117
ILE+++ PG + ++G +GSGK+TLL A RL +T G+I I
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFL-RL-LNT--EGEIQI------------ 79
Query: 118 AYVTQDDTLITTLTVK-----------EAVYYSAQLQL---PDTMPKSDKK-----ERAE 158
D ++T++ + +S + P+ SD++ +
Sbjct: 80 -----DGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAA-HSDQEIWKVADEVG 133
Query: 159 ----VTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSA 210
+ L + LS G K+ + ++ +L++ K+L LDEP++ LD
Sbjct: 134 LRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPV 189
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 51.7 bits (125), Expect = 1e-07
Identities = 44/166 (26%), Positives = 78/166 (46%), Gaps = 24/166 (14%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHK---- 109
G+ ++ + G ++ ++G +G+GKTT L A+AG + + Q GKI+ NG
Sbjct: 17 GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA---QKGKIIFNGQDITNK 73
Query: 110 ---KALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREM-- 164
G A V + + LTV E L + + DK+ + +
Sbjct: 74 PAHVINRMGI-ALVPEGRRIFPELTVYE------NLMM-GAYNRKDKEGIKR-DLEWIFS 124
Query: 165 ---GLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGL 207
L++ + LSGG+++ ++I +++RPKLL +DEP+ GL
Sbjct: 125 LFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGL 170
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 5e-07
Identities = 48/180 (26%), Positives = 75/180 (41%), Gaps = 49/180 (27%)
Query: 76 GPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKE- 134
GPSG GK+TLL +AG L + T G + I + + E
Sbjct: 36 GPSGCGKSTLLRMIAG-LETITS--GDLFI-----------------GEKRMNDTPPAER 75
Query: 135 ---------AVY----------YSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIR 175
A+Y + +L K +R + L ++ + +
Sbjct: 76 GVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRKPK 132
Query: 176 RLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSR--IAKLGQRDGIGRTII 233
LSGGQ++RV+I ++ P + LDEP S LD A+ V R I++L +R +GRT+I
Sbjct: 133 ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD--AALRVQMRIEISRLHKR--LGRTMI 188
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 48.5 bits (115), Expect = 2e-06
Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 10/98 (10%)
Query: 150 KSDKKERAEVTIREMGLQDAMNTR-IRRLSGGQKRRVSISIEI------LTRPKLLFLDE 202
S+ RAE + + R + LSGG++ + ++ + LL LDE
Sbjct: 221 YSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDE 280
Query: 203 PTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPS 240
PT LD +++ + + ++ +I H
Sbjct: 281 PTPYLDEERRRKLITIMERYLKK---IPQVILVSHDEE 315
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* Length = 175 | Back alignment and structure |
|---|
Score = 45.0 bits (106), Expect = 1e-05
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 67 KPGHLLAIMGPSGSGKTTLLDALAGRLG 94
H+ +MG SGSGK+ + +A +L
Sbjct: 6 HDHHIYVLMGVSGSGKSAVASEVAHQLH 33
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} Length = 202 | Back alignment and structure |
|---|
Score = 44.7 bits (105), Expect = 2e-05
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 67 KPGHLLAIMGPSGSGKTTLLDALAGRLG 94
+ + +MG SGSGK+++ +A+A G
Sbjct: 16 RFPGSIVVMGVSGSGKSSVGEAIAEACG 43
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB: 2axp_A* Length = 173 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 1e-04
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 71 LLAIMGPSGSGKTTLLDALAGRLG 94
L+ + GP K+T+ L+ L
Sbjct: 3 LIILEGPDCCFKSTVAAKLSKELK 26
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} Length = 193 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 2e-04
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 67 KPGHLLAIMGPSGSGKTTLLDALAGRLG 94
+ L+ + G +GKTTL ALA L
Sbjct: 3 QTPALIIVTGHPATGKTTLSQALATGLR 30
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 Length = 191 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 2e-04
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 69 GHLLAIMGPSGSGKTTLLDALAGRLG 94
G++L + G GSGK+T+ +ALA G
Sbjct: 9 GNILLLSGHPGSGKSTIAEALANLPG 34
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 3e-04
Identities = 16/112 (14%), Positives = 39/112 (34%), Gaps = 15/112 (13%)
Query: 130 LTVKEAV-YYSAQLQLPDTMPKSDK-KERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSI 187
+ A ++ + + + + + + G + + LSGG++ + +
Sbjct: 13 KIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTF----LSGGERIALGL 68
Query: 188 SIEI------LTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTII 233
+ + LL LDEPT LD +++ + + +I
Sbjct: 69 AFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERY--LK-KIPQVI 117
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 Length = 201 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 5e-04
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 56 SSILEDLTGYAKPGHLL-AIMGPSGSGKTTLLDALAGRLGSD 96
+ + + G L+ I G S SGKTTL + L+ L
Sbjct: 8 DFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQ 49
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} Length = 200 | Back alignment and structure |
|---|
Score = 39.7 bits (92), Expect = 7e-04
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 66 AKPGHLLAIMGPSGSGKTTLLDALAGRL 93
+P + +MG SGSGKTT+ +A
Sbjct: 26 GEPTRHVVVMGVSGSGKTTIAHGVADET 53
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Score = 40.6 bits (95), Expect = 8e-04
Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 15/95 (15%)
Query: 152 DKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISI-------EILTRPKLLFLDEPT 204
+ + EV + ++ LSGG++ V++S+ I R + + LDEPT
Sbjct: 260 ELTKDFEVRVHAPNGVLTIDN----LSGGEQIAVALSLRLAIANALIGNRVECIILDEPT 315
Query: 205 SGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQP 239
LD + K+ I + II + H
Sbjct: 316 VYLDENRRAKLAEIFRKVKS---IPQMIIIT-HHR 346
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 449 | |||
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.98 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.98 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.98 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.97 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.97 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.97 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.95 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.94 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.93 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.93 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.93 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.92 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.91 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.9 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.89 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.88 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.88 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.88 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.87 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.87 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.87 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.86 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.86 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.86 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.85 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.85 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.84 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.84 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.84 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.83 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.83 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.82 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.82 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.81 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.81 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.8 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.79 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.79 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.79 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.79 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.78 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.76 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.76 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.76 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.75 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.75 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.75 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.74 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.74 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.71 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.68 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.68 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.67 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.66 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.65 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.64 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.63 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.62 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.6 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.59 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.58 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.56 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.56 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.55 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.54 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.53 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.52 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.52 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.51 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.51 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.49 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.48 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.48 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.47 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.45 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.44 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.42 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.39 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.39 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.37 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.37 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.37 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.31 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 99.3 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 99.3 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.28 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 99.24 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 99.22 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 99.16 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 99.16 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 99.15 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.13 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 99.09 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 99.09 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 99.04 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 99.03 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 99.03 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 99.01 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 99.0 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 99.0 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.99 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.91 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.87 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.86 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.72 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.67 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.66 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.62 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.6 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.57 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 98.53 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.53 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 98.49 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 98.46 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.46 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.44 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.32 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 98.31 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.31 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 98.3 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.3 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 98.27 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.26 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 98.26 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.26 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 98.23 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 98.22 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.21 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 98.14 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 98.13 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 98.11 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 98.06 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 98.06 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 98.03 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 98.03 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.95 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.94 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.94 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.93 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 97.92 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.89 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.88 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 97.82 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.82 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.79 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.75 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.7 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 97.69 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.69 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 97.66 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 97.65 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.64 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 97.63 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.59 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.53 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.51 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 97.5 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.5 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 97.45 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 97.43 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 97.42 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 97.42 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.41 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 97.4 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.38 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 97.36 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 97.33 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 97.33 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 97.31 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 97.31 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 97.29 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 97.26 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 97.26 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.25 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.25 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.21 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 97.18 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 97.14 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 97.1 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.1 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 97.03 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 97.02 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 97.0 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 97.0 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.96 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.94 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.93 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 96.92 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.91 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 96.91 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 96.82 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 96.81 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 96.81 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 96.81 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.8 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 96.78 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 96.76 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 96.75 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 96.75 | |
| 3io5_A | 333 | Recombination and repair protein; storage dimer, i | 96.73 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 96.68 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 96.66 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 96.63 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 96.63 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 96.62 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.6 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 96.57 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 96.56 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 96.56 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 96.54 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 96.5 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 96.5 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 96.48 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 96.46 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 96.45 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 96.4 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 96.4 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 96.4 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 96.4 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 96.39 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 96.34 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 96.33 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 96.3 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 96.3 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 96.28 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 96.27 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 96.27 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 96.24 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 96.23 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 96.2 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 96.2 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 96.19 | |
| 2r8r_A | 228 | Sensor protein; KDPD, PFAM02702, MCSG, structural | 96.15 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 96.13 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 96.12 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 96.11 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 96.08 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 96.07 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 96.07 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 96.06 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 96.06 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 96.05 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 96.04 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 96.04 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 96.03 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 96.03 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 96.03 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 96.02 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 96.01 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 96.0 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 95.99 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 95.98 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 95.98 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 95.97 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 95.96 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 95.96 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 95.95 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 95.95 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 95.95 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 95.94 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 95.94 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 95.92 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 95.91 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 95.9 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 95.9 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 95.89 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 95.87 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 95.86 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 95.84 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 95.84 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 95.83 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 95.83 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 95.83 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 95.83 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 95.82 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 95.82 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 95.82 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 95.8 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 95.78 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 95.78 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 95.76 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 95.76 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 95.75 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 95.75 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 95.73 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 95.73 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 95.72 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 95.7 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 95.7 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 95.69 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 95.69 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 95.68 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 95.68 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 95.67 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 95.67 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 95.66 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 95.66 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 95.65 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 95.65 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 95.65 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 95.64 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 95.59 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 95.57 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 95.56 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 95.56 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 95.55 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 95.55 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 95.55 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 95.54 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 95.53 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 95.52 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 95.51 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 95.51 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 95.51 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 95.5 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 95.5 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 95.49 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 95.48 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 95.48 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 95.47 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 95.47 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 95.45 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 95.44 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 95.44 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 95.43 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 95.43 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 95.41 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 95.4 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 95.39 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 95.39 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 95.38 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 95.37 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 95.36 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 95.36 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 95.35 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 95.35 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 95.34 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 95.34 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 95.32 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 95.31 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 95.31 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 95.31 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 95.31 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 95.3 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 95.29 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 95.29 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 95.29 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 95.29 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 95.28 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 95.28 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 95.27 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 95.26 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 95.26 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 95.23 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 95.23 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 95.23 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 95.22 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 95.22 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 95.22 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 95.21 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 95.18 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 95.14 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 95.14 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 95.13 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 95.12 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 95.12 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 95.12 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 95.11 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 95.09 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 95.07 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 95.06 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 95.05 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 95.05 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 95.04 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 95.03 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 95.02 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 94.98 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 94.98 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 94.95 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 94.94 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 94.92 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 94.89 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 94.88 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 94.88 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 94.87 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 94.85 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 94.85 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 94.84 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 94.84 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 94.81 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 94.78 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 94.72 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 94.68 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 94.67 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 94.67 | |
| 4tmk_A | 213 | Protein (thymidylate kinase); ATP:DTMP phosphotran | 94.67 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 94.66 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 94.65 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 94.63 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 94.61 | |
| 3tmk_A | 216 | Thymidylate kinase; phosphotransferase; HET: T5A; | 94.6 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 94.6 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 94.6 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 94.55 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 94.54 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 94.5 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 94.46 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 94.45 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 94.44 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 94.43 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 94.4 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 94.38 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 94.31 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 94.24 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 94.22 | |
| 3eph_A | 409 | TRNA isopentenyltransferase; transferase, alternat | 93.88 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 93.84 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 93.82 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 93.79 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 93.77 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 93.71 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 93.7 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 93.69 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 93.68 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 92.75 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 93.66 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 93.59 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 93.59 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 93.54 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 93.52 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 93.41 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 93.28 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 93.27 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 93.26 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 93.24 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 93.21 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 93.16 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 93.16 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 93.09 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 93.05 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 93.05 |
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-53 Score=425.02 Aligned_cols=222 Identities=24% Similarity=0.378 Sum_probs=199.1
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
.+|+++||++.| . ++.+...+|+||||+|++||++||+||||||||||+|+|+|+++|+ +|+|.++|++...
T Consensus 23 ~mi~v~~ls~~y-~-~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~---~G~I~i~G~~i~~~~~ 97 (366)
T 3tui_C 23 HMIKLSNITKVF-H-QGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSE 97 (366)
T ss_dssp CCEEEEEEEEEE-E-CSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECSSCCH
T ss_pred ceEEEEeEEEEe-C-CCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCH
Confidence 469999999994 2 1123467999999999999999999999999999999999999874 9999999997632
Q ss_pred -----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHH
Q 044030 113 -----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSI 187 (449)
Q Consensus 113 -----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i 187 (449)
.++.+|||||++.+++.+||+||+.|+.... ..+.++.++++.++++.+||.+.+++++.+|||||||||+|
T Consensus 98 ~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~---~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaI 174 (366)
T 3tui_C 98 SELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAI 174 (366)
T ss_dssp HHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHH
T ss_pred HHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHH
Confidence 1357999999999999999999999987654 34566777889999999999999999999999999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 188 SIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 188 a~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
||||+.+|++|||||||||||+.++..++++|++++++.|. |||++|||+ ..+..+||+|++|++|++++.|+++++
T Consensus 175 ArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~--Tii~vTHdl-~~~~~~aDrv~vl~~G~iv~~g~~~ev 251 (366)
T 3tui_C 175 ARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGL--TILLITHEM-DVVKRICDCVAVISNGELIEQDTVSEV 251 (366)
T ss_dssp HHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCC--EEEEEESCH-HHHHHHCSEEEEEETTEEEECCBHHHH
T ss_pred HHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCC--EEEEEecCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999999999999999999999999876666 999999996 578999999999999999999999876
Q ss_pred H
Q 044030 268 N 268 (449)
Q Consensus 268 ~ 268 (449)
.
T Consensus 252 ~ 252 (366)
T 3tui_C 252 F 252 (366)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-53 Score=426.11 Aligned_cols=217 Identities=25% Similarity=0.401 Sum_probs=195.9
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec----c-
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKK----A- 111 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~----~- 111 (449)
.|+++||+++| +++.+|+||||+|++||+++|+||||||||||||+|+|+++|+ +|+|.++|++. .
T Consensus 4 ~l~i~~ls~~y------~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~i~~~~~~ 74 (359)
T 3fvq_A 4 ALHIGHLSKSF------QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTIFSKNTN 74 (359)
T ss_dssp CEEEEEEEEEE------TTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEESSSCB
T ss_pred EEEEEeEEEEE------CCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEECcccccc
Confidence 58999999983 5678999999999999999999999999999999999999874 99999999875 1
Q ss_pred --cccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHH
Q 044030 112 --LAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISI 189 (449)
Q Consensus 112 --~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~ 189 (449)
...+.+|||||+..+||.+||+||+.|+...+ ..+.++.+++++++++.+||.+.+++++.+|||||||||+|||
T Consensus 75 ~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValAr 151 (359)
T 3fvq_A 75 LPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG---KGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALAR 151 (359)
T ss_dssp CCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTS---SCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHH
T ss_pred cchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHH
Confidence 12357999999999999999999999986543 2345566778999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 190 EILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 190 aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
||+.+|++|||||||||||+..+..+++.|+++.++.|. |||++|||+ .++..+||+|++|++|+++..|+++++.
T Consensus 152 AL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~--tvi~vTHd~-~ea~~~aDri~vl~~G~i~~~g~~~el~ 227 (359)
T 3fvq_A 152 ALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGK--SAVFVSHDR-EEALQYADRIAVMKQGRILQTASPHELY 227 (359)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTC--EEEEECCCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCC--EEEEEeCCH-HHHHHHCCEEEEEECCEEEEEeCHHHHH
Confidence 999999999999999999999999999999888766666 999999996 6899999999999999999999998764
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-52 Score=425.44 Aligned_cols=217 Identities=27% Similarity=0.404 Sum_probs=199.1
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---c
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---A 113 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---~ 113 (449)
.|+++||++.| +++.+|+||||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++... .
T Consensus 3 ~l~~~~l~~~y------g~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~~~~~~~~ 73 (381)
T 3rlf_A 3 SVQLQNVTKAW------GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPA 73 (381)
T ss_dssp CEEEEEEEEEE------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGG
T ss_pred EEEEEeEEEEE------CCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCC---CeEEEECCEECCCCCHH
Confidence 48999999983 5678999999999999999999999999999999999999874 9999999998632 2
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh
Q 044030 114 YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT 193 (449)
Q Consensus 114 ~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~ 193 (449)
.+.+|||||++.++|.+||+||+.|+...+ ..++++.+++++++++.+||.+.+++++.+|||||||||+|||||+.
T Consensus 74 ~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~ 150 (381)
T 3rlf_A 74 ERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVA 150 (381)
T ss_dssp GSCEEEECTTCCCCTTSCHHHHHTHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHH
T ss_pred HCCEEEEecCCcCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHc
Confidence 367999999999999999999999988764 35567777889999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
+|++|||||||||||+..+..+++.|+++.++.|. |+|++|||+ .++..+||+|++|++|+++..|+++++.
T Consensus 151 ~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~--tii~vTHd~-~ea~~~aDri~vl~~G~i~~~g~~~~l~ 222 (381)
T 3rlf_A 151 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGR--TMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLELY 222 (381)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCC--EEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCC--EEEEEECCH-HHHHHhCCEEEEEECCEEEEEeCHHHHH
Confidence 99999999999999999999999999999876666 999999996 6899999999999999999999998874
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-52 Score=401.90 Aligned_cols=222 Identities=26% Similarity=0.371 Sum_probs=190.3
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc---
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA--- 113 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~--- 113 (449)
+|+++||+++| .. ....+.+|+||||++++||++||+||||||||||||+|+|+++|. +|+|.++|.+....
T Consensus 1 ~l~~~~l~~~y-~~-~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~ 75 (235)
T 3tif_A 1 MVKLKNVTKTY-KM-GEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDD 75 (235)
T ss_dssp CEEEEEEEEEE-EE-TTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHH
T ss_pred CEEEEEEEEEe-CC-CCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHH
Confidence 37899999984 21 112356999999999999999999999999999999999999874 99999999875321
Q ss_pred ------cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchh-hCccCCCCChHHHHHHH
Q 044030 114 ------YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDA-MNTRIRRLSGGQKRRVS 186 (449)
Q Consensus 114 ------~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~~~~LSgGerqRv~ 186 (449)
++.+|||+|++.+++.+||+||+.++.........+..+..+++.++++.++|.+. .++++.+|||||||||+
T Consensus 76 ~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~ 155 (235)
T 3tif_A 76 ELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVA 155 (235)
T ss_dssp HHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHH
T ss_pred HHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHH
Confidence 13599999999999999999999998765322234456667788999999999875 49999999999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhh
Q 044030 187 ISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATA 266 (449)
Q Consensus 187 ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~ 266 (449)
|||||+.+|++|||||||+|||+.++..+++.|++++++.|. |||++|||+. +..+||++++|++|+++..+++++
T Consensus 156 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~--tvi~vtHd~~--~~~~~d~i~~l~~G~i~~~~~~~~ 231 (235)
T 3tif_A 156 IARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGK--TVVVVTHDIN--VARFGERIIYLKDGEVEREEKLRG 231 (235)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCC--EEEEECSCHH--HHTTSSEEEEEETTEEEEEEECC-
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCC--EEEEEcCCHH--HHHhCCEEEEEECCEEEEEcChhh
Confidence 999999999999999999999999999999999999865566 9999999963 568999999999999999998765
Q ss_pred H
Q 044030 267 A 267 (449)
Q Consensus 267 ~ 267 (449)
+
T Consensus 232 ~ 232 (235)
T 3tif_A 232 F 232 (235)
T ss_dssp -
T ss_pred h
Confidence 4
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-52 Score=407.73 Aligned_cols=218 Identities=27% Similarity=0.419 Sum_probs=192.3
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.|+++||++. +. +...+|+||||+|++||+++|+||||||||||+|+|+|+++|. +|+|.++|++...
T Consensus 7 ~l~i~~ls~~-y~----~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~---~G~I~~~G~~i~~~~~~ 78 (275)
T 3gfo_A 7 ILKVEELNYN-YS----DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDYSRKG 78 (275)
T ss_dssp EEEEEEEEEE-CT----TSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCCSHHH
T ss_pred EEEEEEEEEE-EC----CCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeEEEECCEECCccccc
Confidence 6899999998 31 2346999999999999999999999999999999999999874 9999999997631
Q ss_pred ---ccCcEEEEcCCCC-CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHH
Q 044030 113 ---AYGTSAYVTQDDT-LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSIS 188 (449)
Q Consensus 113 ---~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia 188 (449)
.++.+|||||++. .+..+||+||+.|+.... ..+.++.+++++++++.+||.+..++++.+|||||||||+||
T Consensus 79 ~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iA 155 (275)
T 3gfo_A 79 IMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIA 155 (275)
T ss_dssp HHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHH
T ss_pred HHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHH
Confidence 1246999999963 344789999999987653 345666778899999999999999999999999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 189 IEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 189 ~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
+||+.+|++|||||||+|||+.++..+++.|++++++.|. |||++||++. ++..+||++++|++|++++.|+++++.
T Consensus 156 raL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~--tvi~vtHdl~-~~~~~~drv~~l~~G~i~~~g~~~~~~ 232 (275)
T 3gfo_A 156 GVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGI--TIIIATHDID-IVPLYCDNVFVMKEGRVILQGNPKEVF 232 (275)
T ss_dssp HHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCC--EEEEEESCCS-SGGGGCSEEEEEETTEEEEEECHHHHT
T ss_pred HHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCC--EEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999999999999999999999733455 9999999975 688899999999999999999998764
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-52 Score=402.23 Aligned_cols=216 Identities=28% Similarity=0.388 Sum_probs=191.9
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
+|+++||++.| +++.+|+||||+|++||++||+||||||||||+|+|+|+++|+ +|+|.++|.+...
T Consensus 6 ~l~i~~l~~~y------~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~ 76 (262)
T 1b0u_A 6 KLHVIDLHKRY------GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDK 76 (262)
T ss_dssp CEEEEEEEEEE------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECT
T ss_pred eEEEeeEEEEE------CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEccccccc
Confidence 58999999983 4567999999999999999999999999999999999999874 9999999987531
Q ss_pred --------------ccCcEEEEcCCCCCCCCCCHHHHHHHHH-hccCCCCCCHHHHHHHHHHHHHHcCCchh-hCccCCC
Q 044030 113 --------------AYGTSAYVTQDDTLITTLTVKEAVYYSA-QLQLPDTMPKSDKKERAEVTIREMGLQDA-MNTRIRR 176 (449)
Q Consensus 113 --------------~~~~i~yv~Q~~~l~~~lTv~e~l~~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~~~~ 176 (449)
.++.++||+|++.+++.+||+||+.++. ..+ ..+..+.+++++++++.+||.+. +++++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~ 153 (262)
T 1b0u_A 77 DGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQGKYPVH 153 (262)
T ss_dssp TSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHHTSCGGG
T ss_pred cccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhcCCccc
Confidence 1246999999999999999999999864 332 23444556778999999999999 9999999
Q ss_pred CChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCC
Q 044030 177 LSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAG 256 (449)
Q Consensus 177 LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G 256 (449)
|||||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++ |. |||++|||+ .++..+||++++|++|
T Consensus 154 LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~--tvi~vtHd~-~~~~~~~d~v~~l~~G 229 (262)
T 1b0u_A 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GK--TMVVVTHEM-GFARHVSSHVIFLHQG 229 (262)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TC--CEEEECSCH-HHHHHHCSEEEEEETT
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CC--EEEEEeCCH-HHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999999855 55 999999996 5788899999999999
Q ss_pred eEEEecChhhHH
Q 044030 257 QTVYFGPATAAN 268 (449)
Q Consensus 257 ~iv~~g~~~~~~ 268 (449)
++++.|+++++.
T Consensus 230 ~i~~~g~~~~~~ 241 (262)
T 1b0u_A 230 KIEEEGDPEQVF 241 (262)
T ss_dssp EEEEEECHHHHH
T ss_pred EEEEeCCHHHHH
Confidence 999999987663
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-51 Score=401.56 Aligned_cols=216 Identities=25% Similarity=0.407 Sum_probs=192.1
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecc---c-
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKA---L- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~---~- 112 (449)
+|+++||++.| +++.+|+||||+|++||+++|+||||||||||||+|+|+++|+ +|+|.++|++.. .
T Consensus 24 ~l~i~~l~~~y------~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~ 94 (263)
T 2olj_A 24 MIDVHQLKKSF------GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD---EGEIIIDGINLKAKDTN 94 (263)
T ss_dssp SEEEEEEEEEE------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEESSSTTCC
T ss_pred eEEEEeEEEEE------CCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCC---CcEEEECCEECCCcccc
Confidence 59999999983 4567999999999999999999999999999999999999874 999999998763 1
Q ss_pred ---ccCcEEEEcCCCCCCCCCCHHHHHHHHH-hccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHH
Q 044030 113 ---AYGTSAYVTQDDTLITTLTVKEAVYYSA-QLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSIS 188 (449)
Q Consensus 113 ---~~~~i~yv~Q~~~l~~~lTv~e~l~~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia 188 (449)
.++.++||+|++.+++.+||+||+.|+. ... ..+..+.+++++++++.+||.+..++++.+|||||||||+||
T Consensus 95 ~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lA 171 (263)
T 2olj_A 95 LNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIA 171 (263)
T ss_dssp HHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred HHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHH
Confidence 1245999999999999999999999964 332 234445567789999999999999999999999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 189 IEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 189 ~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
+||+.+|++|||||||+|||+.++..+++.|++++++ |. |||++|||+ +++..+||++++|++|++++.|+++++.
T Consensus 172 raL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~--tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
T 2olj_A 172 RALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE-GM--TMVVVTHEM-GFAREVGDRVLFMDGGYIIEEGKPEDLF 247 (263)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TC--EEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CC--EEEEEcCCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999855 55 999999996 5788899999999999999999987764
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-51 Score=391.73 Aligned_cols=210 Identities=32% Similarity=0.439 Sum_probs=187.0
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc---
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA--- 113 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~--- 113 (449)
+|+++||++.| +++.+|+||||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.+....
T Consensus 4 ~l~~~~l~~~y------~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~ 74 (224)
T 2pcj_A 4 ILRAENIKKVI------RGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT---EGKVFLEGKEVDYTNEK 74 (224)
T ss_dssp EEEEEEEEEEE------TTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCS---EEEEEETTEECCSSCHH
T ss_pred EEEEEeEEEEE------CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHH
Confidence 58999999983 3467999999999999999999999999999999999999874 99999999875321
Q ss_pred ------cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHH
Q 044030 114 ------YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSI 187 (449)
Q Consensus 114 ------~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i 187 (449)
.+.++||+|++.+++.+||+||+.++...+ ..+..+.+++++++++.+||.+..++++.+|||||||||+|
T Consensus 75 ~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~l 151 (224)
T 2pcj_A 75 ELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM---GKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAI 151 (224)
T ss_dssp HHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHH
T ss_pred HHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHH
Confidence 146999999999999999999999976543 23344556778999999999999999999999999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 188 SIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 188 a~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
|+||+.+|++|||||||+|||+.++..+++.|++++++ |. |||++|||+ ..+ .+||++++|++|++++.|+
T Consensus 152 aral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~-g~--tvi~vtHd~-~~~-~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 152 ARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG-GT--SIVMVTHER-ELA-ELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TC--EEEEECSCH-HHH-TTSSEEEEEETTEEEEEEE
T ss_pred HHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CC--EEEEEcCCH-HHH-HhCCEEEEEECCEEEEEee
Confidence 99999999999999999999999999999999999865 55 999999996 455 8999999999999999885
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-51 Score=413.83 Aligned_cols=222 Identities=23% Similarity=0.408 Sum_probs=198.6
Q ss_pred CCCeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc
Q 044030 33 DDGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL 112 (449)
Q Consensus 33 ~~~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~ 112 (449)
.....|+++||++. +. +++.+|+||||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++...
T Consensus 10 ~~~~~l~~~~l~~~-y~----g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~ 81 (355)
T 1z47_A 10 HGSMTIEFVGVEKI-YP----GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTD 81 (355)
T ss_dssp -CCEEEEEEEEEEC-CT----TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTT
T ss_pred CCCceEEEEEEEEE-Ec----CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECCc
Confidence 34567999999998 21 3467999999999999999999999999999999999999874 9999999987632
Q ss_pred ---ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHH
Q 044030 113 ---AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISI 189 (449)
Q Consensus 113 ---~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~ 189 (449)
..+.+|||+|+..++|.+||+||+.|+...+ ..+.++.+++++++++.+||.+.+++++.+|||||||||+|||
T Consensus 82 ~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalAr 158 (355)
T 1z47_A 82 LPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALAR 158 (355)
T ss_dssp CCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHH
T ss_pred CChhhCcEEEEecCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHH
Confidence 2467999999999999999999999987653 2445566778999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 190 EILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 190 aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
||+.+|++|||||||||||+.++..+++.|++++++.|. |||++|||+ .++..+||++++|++|+++..|+++++.
T Consensus 159 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~--tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~ 234 (355)
T 1z47_A 159 ALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGV--TSVFVTHDQ-EEALEVADRVLVLHEGNVEQFGTPEEVY 234 (355)
T ss_dssp HHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTC--EEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC--EEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999866666 999999996 5789999999999999999999998764
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-51 Score=415.47 Aligned_cols=217 Identities=26% Similarity=0.425 Sum_probs=196.2
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.|+++||+++| +++.+|+|+||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++...
T Consensus 3 ~l~~~~l~~~y------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~ 73 (372)
T 1g29_1 3 GVRLVDVWKVF------GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKG 73 (372)
T ss_dssp EEEEEEEEEEE------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGT
T ss_pred EEEEEeEEEEE------CCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCC---ccEEEECCEECcccccc
Confidence 48999999983 4567999999999999999999999999999999999999874 9999999986421
Q ss_pred -----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHH
Q 044030 113 -----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSI 187 (449)
Q Consensus 113 -----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i 187 (449)
..+.+|||||+..+||++||+||+.|+...+ ..+..+.+++++++++.+||.+.+++++.+|||||||||+|
T Consensus 74 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRval 150 (372)
T 1g29_1 74 IFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVAL 150 (372)
T ss_dssp EECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHH
T ss_pred ccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHH
Confidence 2357999999999999999999999987654 24455667789999999999999999999999999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 188 SIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 188 a~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
||||+.+|++|||||||||||+..+..+.+.|+++.++.|. |+|++|||+ .++..+||++++|++|+++..|+++++
T Consensus 151 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~--tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l 227 (372)
T 1g29_1 151 GRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGV--TTIYVTHDQ-VEAMTMGDRIAVMNRGVLQQVGSPDEV 227 (372)
T ss_dssp HHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTC--EEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCC--EEEEECCCH-HHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999866666 999999996 578999999999999999999999877
Q ss_pred H
Q 044030 268 N 268 (449)
Q Consensus 268 ~ 268 (449)
.
T Consensus 228 ~ 228 (372)
T 1g29_1 228 Y 228 (372)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-51 Score=415.53 Aligned_cols=217 Identities=26% Similarity=0.426 Sum_probs=194.9
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---c
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---A 113 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---~ 113 (449)
.|+++||++.| +++.+|+|+||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++... .
T Consensus 3 ~l~~~~l~~~y------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~ 73 (359)
T 2yyz_A 3 SIRVVNLKKYF------GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVLVNDIPPK 73 (359)
T ss_dssp CEEEEEEEEEE------TTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGG
T ss_pred EEEEEEEEEEE------CCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCC---ccEEEECCEECCCCChh
Confidence 48999999983 4567999999999999999999999999999999999999874 9999999987632 2
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh
Q 044030 114 YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT 193 (449)
Q Consensus 114 ~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~ 193 (449)
.+.+|||||+..++|++||+||+.|+...+ ..+..+.+++++++++.+||.+.+++++.+|||||||||+|||||+.
T Consensus 74 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~ 150 (359)
T 2yyz_A 74 YREVGMVFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVK 150 (359)
T ss_dssp GTTEEEECSSCCCCTTSCHHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred hCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 367999999999999999999999976543 23334445678999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
+|++|||||||||||+..+..+.+.|+++.++.|. |+|++|||+ .++..+||++++|++|+++..|+++++.
T Consensus 151 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~--tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~l~ 222 (359)
T 2yyz_A 151 QPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGI--TSVYVTHDQ-AEAMTMASRIAVFNQGKLVQYGTPDEVY 222 (359)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCC--EEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCC--EEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999866666 999999996 5788999999999999999999998774
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-51 Score=396.53 Aligned_cols=218 Identities=26% Similarity=0.389 Sum_probs=193.0
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
..|+++||++.| +++.+|+||||++++||+++|+||||||||||||+|+|+++|. +|+|.++|.+...
T Consensus 14 ~~l~i~~l~~~y------~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~ 84 (256)
T 1vpl_A 14 GAVVVKDLRKRI------GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPH 84 (256)
T ss_dssp CCEEEEEEEEEE------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHH
T ss_pred CeEEEEEEEEEE------CCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCccHH
Confidence 358999999983 4567999999999999999999999999999999999999874 9999999987532
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEI 191 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL 191 (449)
.++.++||+|++.+++.+||+||+.+....+ ..+..+.+++++++++.+||.+..++++.+|||||||||+||+||
T Consensus 85 ~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL 161 (256)
T 1vpl_A 85 EVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARAL 161 (256)
T ss_dssp HHHTTEEEECTTCCCCTTSBHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHH
T ss_pred HHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHH
Confidence 1357999999999999999999999876543 223444456788999999999999999999999999999999999
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHHH
Q 044030 192 LTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANE 269 (449)
Q Consensus 192 ~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~~ 269 (449)
+.+|++|||||||+|||+.++..+++.|++++++ |. |||++||++ .++..+||++++|++|++++.|+++++.+
T Consensus 162 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~--tiiivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 162 MVNPRLAILDEPTSGLDVLNAREVRKILKQASQE-GL--TILVSSHNM-LEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TC--EEEEEECCH-HHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhC-CC--EEEEEcCCH-HHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 9999999999999999999999999999999754 55 999999996 57888999999999999999999887643
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-51 Score=414.28 Aligned_cols=217 Identities=25% Similarity=0.436 Sum_probs=196.4
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---c
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---A 113 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---~ 113 (449)
.|+++||++. + +++.+|+|+||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++... .
T Consensus 3 ~l~~~~l~~~-y-----~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~ 73 (362)
T 2it1_A 3 EIKLENIVKK-F-----GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPPK 73 (362)
T ss_dssp CEEEEEEEEE-S-----SSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGG
T ss_pred EEEEEeEEEE-E-----CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHh
Confidence 4899999998 2 4567999999999999999999999999999999999999874 9999999987632 2
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh
Q 044030 114 YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT 193 (449)
Q Consensus 114 ~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~ 193 (449)
.+.+|||||+..++|++||+||+.|+...+ ..+..+.+++++++++.+||.+.+++++.+|||||||||+|||||+.
T Consensus 74 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~ 150 (362)
T 2it1_A 74 DRNVGLVFQNWALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVK 150 (362)
T ss_dssp GTTEEEECTTCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTT
T ss_pred HCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHc
Confidence 367999999999999999999999987653 23455667789999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
+|++|||||||||||+..+..+.+.|+++.++.|. |+|++|||+ .++..+||++++|++|+++..|+++++.
T Consensus 151 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~--tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~~~ 222 (362)
T 2it1_A 151 EPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGI--TTVYVTHDQ-AEALAMADRIAVIREGEILQVGTPDEVY 222 (362)
T ss_dssp CCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTC--EEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCC--EEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999866666 999999996 5789999999999999999999998774
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-51 Score=414.40 Aligned_cols=217 Identities=25% Similarity=0.397 Sum_probs=195.4
Q ss_pred eEEEEeeEEEEeecCcccccc--eeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc--
Q 044030 37 FLTWKDLTVTIVSNGKKGSSS--ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~--iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-- 112 (449)
+|+++||++.| +++. +|+|+||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++...
T Consensus 3 ~l~i~~l~~~y------~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~ 73 (353)
T 1oxx_K 3 RIIVKNVSKVF------KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNG 73 (353)
T ss_dssp CEEEEEEEEEE------GGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETT
T ss_pred EEEEEeEEEEE------CCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECcccc
Confidence 48999999983 4466 999999999999999999999999999999999999874 9999999986521
Q ss_pred ------ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHH
Q 044030 113 ------AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVS 186 (449)
Q Consensus 113 ------~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ 186 (449)
..+.+|||||+..+++++||+||+.|+...+ ..+.++.+++++++++.+||.+.+++++.+|||||||||+
T Consensus 74 ~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRva 150 (353)
T 1oxx_K 74 KLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVA 150 (353)
T ss_dssp EESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHH
T ss_pred cccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHH
Confidence 2357999999999999999999999986543 2445566778999999999999999999999999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhh
Q 044030 187 ISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATA 266 (449)
Q Consensus 187 ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~ 266 (449)
|||||+.+|++|||||||+|||+..+..+++.|++++++.|. |+|++|||+ .++..+||++++|++|+++..|++++
T Consensus 151 lAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~--tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~ 227 (353)
T 1oxx_K 151 LARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGV--TLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKPED 227 (353)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCC--EEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 999999999999999999999999999999999999866666 999999996 57899999999999999999999987
Q ss_pred HH
Q 044030 267 AN 268 (449)
Q Consensus 267 ~~ 268 (449)
+.
T Consensus 228 l~ 229 (353)
T 1oxx_K 228 LY 229 (353)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-51 Score=398.81 Aligned_cols=217 Identities=22% Similarity=0.352 Sum_probs=190.0
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc---
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA--- 113 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~--- 113 (449)
+|+++||++.| +++.+|+||||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.+....
T Consensus 7 ~l~i~~l~~~y------~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~ 77 (257)
T 1g6h_A 7 ILRTENIVKYF------GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPA 77 (257)
T ss_dssp EEEEEEEEEEE------TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHH
T ss_pred EEEEeeeEEEE------CCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHH
Confidence 58999999983 4567999999999999999999999999999999999999874 99999999876321
Q ss_pred ---cCcEEEEcCCCCCCCCCCHHHHHHHHHhc-cCCC---------CCCHHHHHHHHHHHHHHcCCchhhCccCCCCChH
Q 044030 114 ---YGTSAYVTQDDTLITTLTVKEAVYYSAQL-QLPD---------TMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGG 180 (449)
Q Consensus 114 ---~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~-~~~~---------~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgG 180 (449)
++.++||+|++.+++.+||+||+.++... .... .....+.+++++++++.+||.+..++++.+||||
T Consensus 78 ~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG 157 (257)
T 1g6h_A 78 ELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGG 157 (257)
T ss_dssp HHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHH
T ss_pred HHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHH
Confidence 23699999999999999999999987533 1110 0122344567899999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 181 erqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
|||||+||+||+.+|++|||||||+|||+.++..+++.|++++++ |. |||++||++. ++..+||++++|++|++++
T Consensus 158 qkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~--tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~ 233 (257)
T 1g6h_A 158 QMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK-GI--TFLIIEHRLD-IVLNYIDHLYVMFNGQIIA 233 (257)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TC--EEEEECSCCS-TTGGGCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CC--EEEEEecCHH-HHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999854 55 9999999974 6888999999999999999
Q ss_pred ecChhh
Q 044030 261 FGPATA 266 (449)
Q Consensus 261 ~g~~~~ 266 (449)
.|++++
T Consensus 234 ~g~~~~ 239 (257)
T 1g6h_A 234 EGRGEE 239 (257)
T ss_dssp EEESHH
T ss_pred EeCHHH
Confidence 998877
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-51 Score=398.62 Aligned_cols=215 Identities=24% Similarity=0.356 Sum_probs=192.0
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc--
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA-- 113 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~-- 113 (449)
..|+++||++.| +++.+|+||||+|++||++||+||||||||||+|+|+|+++|+ +|+|.++|++....
T Consensus 10 ~~l~~~~l~~~~------~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~ 80 (266)
T 4g1u_C 10 ALLEASHLHYHV------QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS---HGECHLLGQNLNSWQP 80 (266)
T ss_dssp CEEEEEEEEEEE------TTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCS---SCEEEETTEETTTSCH
T ss_pred ceEEEEeEEEEe------CCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCCH
Confidence 469999999983 4578999999999999999999999999999999999999874 89999999986421
Q ss_pred ---cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHH
Q 044030 114 ---YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIE 190 (449)
Q Consensus 114 ---~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~a 190 (449)
.+.++|++|++.+++.+||+||+.++...+ ...+.+++++++++.+++.+..++++.+|||||||||+||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAra 155 (266)
T 4g1u_C 81 KALARTRAVMRQYSELAFPFSVSEVIQMGRAPY-----GGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARV 155 (266)
T ss_dssp HHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS-----CSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHH
T ss_pred HHHhheEEEEecCCccCCCCCHHHHHHhhhhhc-----CcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHH
Confidence 246999999999988899999999876432 123345678999999999999999999999999999999999
Q ss_pred HHh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecCh
Q 044030 191 ILT------RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264 (449)
Q Consensus 191 L~~------~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~ 264 (449)
|+. +|++|||||||+|||+.++..+++.|++++++.| +|||++|||+ +++..+||++++|++|++++.|++
T Consensus 156 L~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~--~tvi~vtHdl-~~~~~~~d~v~vl~~G~i~~~g~~ 232 (266)
T 4g1u_C 156 LAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEP--LAVCCVLHDL-NLAALYADRIMLLAQGKLVACGTP 232 (266)
T ss_dssp HHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSS--EEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECH
T ss_pred HhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCC--CEEEEEEcCH-HHHHHhCCEEEEEECCEEEEEcCH
Confidence 999 9999999999999999999999999999986644 4999999996 578899999999999999999999
Q ss_pred hhH
Q 044030 265 TAA 267 (449)
Q Consensus 265 ~~~ 267 (449)
+++
T Consensus 233 ~~~ 235 (266)
T 4g1u_C 233 EEV 235 (266)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-51 Score=414.61 Aligned_cols=217 Identities=26% Similarity=0.423 Sum_probs=189.3
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---c
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---A 113 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---~ 113 (449)
.|+++||++.| +++.+|+|+||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++... .
T Consensus 11 ~l~~~~l~~~y------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~ 81 (372)
T 1v43_A 11 EVKLENLTKRF------GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPK 81 (372)
T ss_dssp CEEEEEEEEEE------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGG
T ss_pred eEEEEEEEEEE------CCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCCCChh
Confidence 38999999983 4567999999999999999999999999999999999999874 9999999987632 2
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh
Q 044030 114 YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT 193 (449)
Q Consensus 114 ~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~ 193 (449)
.+.+|||||+..+||++||+||+.|+...+ ..+.++.+++++++++.+||.+.+++++.+|||||||||+|||||+.
T Consensus 82 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~ 158 (372)
T 1v43_A 82 DRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVV 158 (372)
T ss_dssp GGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTT
T ss_pred hCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhc
Confidence 357999999999999999999999875432 24455667789999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
+|++|||||||||||+..+..+.+.|+++.++.|. |+|++|||+ .++..+||++++|++|+++..|+++++.
T Consensus 159 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~--tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~ 230 (372)
T 1v43_A 159 EPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKV--TTIYVTHDQ-VEAMTMGDRIAVMNRGQLLQIGSPTEVY 230 (372)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTC--EEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999866666 999999996 5788999999999999999999998774
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-51 Score=390.35 Aligned_cols=214 Identities=28% Similarity=0.401 Sum_probs=188.3
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
+|+++||++.| +++.+|+||||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|.+...
T Consensus 6 ~l~~~~l~~~y------~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~ 76 (240)
T 1ji0_A 6 VLEVQSLHVYY------GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAH 76 (240)
T ss_dssp EEEEEEEEEEE------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHH
T ss_pred eEEEEeEEEEE------CCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCHH
Confidence 58999999983 3467999999999999999999999999999999999999874 9999999987632
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcC-CchhhCccCCCCChHHHHHHHHHH
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMG-LQDAMNTRIRRLSGGQKRRVSISI 189 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~~~~LSgGerqRv~ia~ 189 (449)
.++.++||+|++.+++.+||+||+.++.... ....+.++.++++++.++ +.+..++++.+|||||||||+||+
T Consensus 77 ~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~----~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAr 152 (240)
T 1ji0_A 77 VINRMGIALVPEGRRIFPELTVYENLMMGAYNR----KDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGR 152 (240)
T ss_dssp HHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC----CCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHH
T ss_pred HHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC----CCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHH
Confidence 1245999999999999999999998864211 122344567888999995 999999999999999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 190 EILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 190 aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
||+.+|++|||||||+|||+.++..+++.|+++++ .|. |||++||++ .++..+||++++|++|++++.|+++++
T Consensus 153 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g~--tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 226 (240)
T 1ji0_A 153 ALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EGT--TILLVEQNA-LGALKVAHYGYVLETGQIVLEGKASEL 226 (240)
T ss_dssp HHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTC--CEEEEESCH-HHHHHHCSEEEEEETTEEEEEEEHHHH
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCC--EEEEEecCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999999999999999999999975 455 999999996 578899999999999999999988765
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-50 Score=407.14 Aligned_cols=212 Identities=24% Similarity=0.436 Sum_probs=190.6
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---cc
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---AY 114 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---~~ 114 (449)
|+++||++. + +++ +|+|+||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++... .+
T Consensus 2 l~~~~l~~~-y-----~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~ 71 (348)
T 3d31_A 2 IEIESLSRK-W-----KNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEK 71 (348)
T ss_dssp EEEEEEEEE-C-----SSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHH
T ss_pred EEEEEEEEE-E-----CCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCC---CcEEEECCEECCCCchhh
Confidence 789999998 2 445 999999999999999999999999999999999999874 9999999987632 13
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhC
Q 044030 115 GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTR 194 (449)
Q Consensus 115 ~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~ 194 (449)
+.+|||||+..+||++||+||+.|+...+. .+.. ++++++++.+||++.+++++.+|||||||||+|||||+.+
T Consensus 72 r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~---~~~~---~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~ 145 (348)
T 3d31_A 72 HDIAFVYQNYSLFPHMNVKKNLEFGMRMKK---IKDP---KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTN 145 (348)
T ss_dssp HTCEEECTTCCCCTTSCHHHHHHHHHHHHC---CCCH---HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSC
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHHcC---CCHH---HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 569999999999999999999999876431 1222 6788999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 195 PKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 195 P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
|++|||||||+|||+..+..+.+.|++++++.|. |+|++|||+ .++..+||++++|++|+++..|+++++.
T Consensus 146 P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~--tii~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~~~ 216 (348)
T 3d31_A 146 PKILLLDEPLSALDPRTQENAREMLSVLHKKNKL--TVLHITHDQ-TEARIMADRIAVVMDGKLIQVGKPEEIF 216 (348)
T ss_dssp CSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTC--EEEEEESCH-HHHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHHHHhcCC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999866666 999999996 5789999999999999999999998763
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-50 Score=385.99 Aligned_cols=211 Identities=22% Similarity=0.378 Sum_probs=186.4
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---cc
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---AY 114 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---~~ 114 (449)
|+++||++.| ++ +|+|+||++++ |+++|+||||||||||+|+|+|+++|+ +|+|.++|.+... .+
T Consensus 2 l~~~~l~~~y------~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 69 (240)
T 2onk_A 2 FLKVRAEKRL------GN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPER 69 (240)
T ss_dssp CEEEEEEEEE------TT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTT
T ss_pred EEEEEEEEEe------CC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCchhh
Confidence 6899999983 22 59999999999 999999999999999999999999874 9999999987532 23
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhC
Q 044030 115 GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTR 194 (449)
Q Consensus 115 ~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~ 194 (449)
+.++||+|++.+++.+||+||+.|+...+ . ....+++++++++.+||.+..++++.+|||||||||+||+||+.+
T Consensus 70 ~~i~~v~q~~~l~~~ltv~enl~~~~~~~---~--~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~ 144 (240)
T 2onk_A 70 RGIGFVPQDYALFPHLSVYRNIAYGLRNV---E--RVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQ 144 (240)
T ss_dssp SCCBCCCSSCCCCTTSCHHHHHHTTCTTS---C--HHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTC
T ss_pred CcEEEEcCCCccCCCCcHHHHHHHHHHHc---C--CchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 56999999999999999999998864321 1 122356788999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 195 PKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 195 P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
|++|||||||+|||+.++..+++.|++++++.|. |||++||++ .++..+||++++|++|++++.|+++++.
T Consensus 145 p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~--tvi~vtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 215 (240)
T 2onk_A 145 PRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDV--PILHVTHDL-IEAAMLADEVAVMLNGRIVEKGKLKELF 215 (240)
T ss_dssp CSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTC--CEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999765555 999999996 5788999999999999999999987764
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-49 Score=388.77 Aligned_cols=218 Identities=26% Similarity=0.360 Sum_probs=187.7
Q ss_pred eEEEEeeEEEEeecCcccc---cceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-
Q 044030 37 FLTWKDLTVTIVSNGKKGS---SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~---~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~- 112 (449)
+|+++||++.| .. ++ +.+|+||||+|++||+++|+||||||||||+|+|+|+++|. +|+|.++|.+...
T Consensus 2 ~l~~~~l~~~y-~~---~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g~~~~~~ 74 (266)
T 2yz2_A 2 RIEVVNVSHIF-HR---GTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGY 74 (266)
T ss_dssp CEEEEEEEEEE-ST---TSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCHH
T ss_pred EEEEEEEEEEe-cC---CCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEECchH
Confidence 58999999983 10 12 57999999999999999999999999999999999999874 9999999987531
Q ss_pred -ccCcEEEEcCCC-CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc--hhhCccCCCCChHHHHHHHHH
Q 044030 113 -AYGTSAYVTQDD-TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ--DAMNTRIRRLSGGQKRRVSIS 188 (449)
Q Consensus 113 -~~~~i~yv~Q~~-~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~~~~LSgGerqRv~ia 188 (449)
.++.++||+|++ .+++.+||+||+.++.... .+..+.+++++++++.+||. +..++++.+|||||||||+||
T Consensus 75 ~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lA 150 (266)
T 2yz2_A 75 EIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF----YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIA 150 (266)
T ss_dssp HHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTT----CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHH
T ss_pred HhhhhEEEEeccchhhcCCCcHHHHHHHHHHhc----CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHH
Confidence 235699999995 5667789999999865321 11222345688999999999 999999999999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 189 IEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 189 ~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
+||+.+|++|||||||+|||+.++..+++.|++++++ |. |||++||++. .+..+||++++|++|++++.|+++++.
T Consensus 151 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~--tii~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 226 (266)
T 2yz2_A 151 SVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL-GK--TVILISHDIE-TVINHVDRVVVLEKGKKVFDGTRMEFL 226 (266)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TC--EEEEECSCCT-TTGGGCSEEEEEETTEEEEEEEHHHHH
T ss_pred HHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc-CC--EEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999999755 55 9999999974 677899999999999999999987764
Q ss_pred H
Q 044030 269 E 269 (449)
Q Consensus 269 ~ 269 (449)
.
T Consensus 227 ~ 227 (266)
T 2yz2_A 227 E 227 (266)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-49 Score=382.90 Aligned_cols=216 Identities=22% Similarity=0.292 Sum_probs=180.0
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcC--CCCCCCceeEEEECCEecccc-
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGR--LGSDTRQTGKILINGHKKALA- 113 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~--~~~~~~~~G~I~~~g~~~~~~- 113 (449)
+|+++||++.| +++.+|+||||++++||+++|+||||||||||+|+|+|+ ++| .+|+|.++|.+....
T Consensus 3 ~l~~~~l~~~y------~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p---~~G~I~~~g~~~~~~~ 73 (250)
T 2d2e_A 3 QLEIRDLWASI------DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTV---ERGEILLDGENILELS 73 (250)
T ss_dssp EEEEEEEEEEE------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEE---EEEEEEETTEECTTSC
T ss_pred eEEEEeEEEEE------CCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CceEEEECCEECCCCC
Confidence 48999999983 346799999999999999999999999999999999998 544 599999999875321
Q ss_pred -----cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCC-chhhCccCCC-CChHHHHHHH
Q 044030 114 -----YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGL-QDAMNTRIRR-LSGGQKRRVS 186 (449)
Q Consensus 114 -----~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-~~~~~~~~~~-LSgGerqRv~ 186 (449)
...++|++|++.+++.+||+||+.++............+..+++.++++.+|| .+..++++.+ |||||||||+
T Consensus 74 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~ 153 (250)
T 2d2e_A 74 PDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNE 153 (250)
T ss_dssp HHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHH
T ss_pred HHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHH
Confidence 23589999999999999999999886532111112233445678899999999 5889999998 9999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhh-cCeEEEeeCCeEEEecChh
Q 044030 187 ISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQL-FHNLCLLSAGQTVYFGPAT 265 (449)
Q Consensus 187 ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~-~D~v~~l~~G~iv~~g~~~ 265 (449)
||+||+.+|++|||||||+|||+.++..+++.|+++++ .|. |||++||++. .+..+ ||++++|++|++++.|+++
T Consensus 154 iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~--tvi~vtHd~~-~~~~~~~d~v~~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 154 ILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG-PNF--GALVITHYQR-ILNYIQPDKVHVMMDGRVVATGGPE 229 (250)
T ss_dssp HHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS-TTC--EEEEECSSSG-GGGTSCCSEEEEEETTEEEEEESHH
T ss_pred HHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-cCC--EEEEEecCHH-HHHHhcCCEEEEEECCEEEEEeCHH
Confidence 99999999999999999999999999999999999974 444 9999999974 66677 5999999999999999986
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-50 Score=391.34 Aligned_cols=221 Identities=23% Similarity=0.296 Sum_probs=186.4
Q ss_pred CCeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecc--
Q 044030 34 DGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKA-- 111 (449)
Q Consensus 34 ~~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~-- 111 (449)
..+.|+++||++.| +++.+|+||||+|++||+++|+||||||||||||+|+|+++|+ +|+|.++|.+..
T Consensus 18 ~~~~l~~~~l~~~y------~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~ 88 (279)
T 2ihy_A 18 SHMLIQLDQIGRMK------QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT---SGTVNLFGKMPGKV 88 (279)
T ss_dssp -CEEEEEEEEEEEE------TTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTBCCC--
T ss_pred CCceEEEEeEEEEE------CCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CeEEEECCEEcccc
Confidence 34579999999983 4467999999999999999999999999999999999999874 999999998653
Q ss_pred c-----ccCcEEEEcCCCCC--CCCCCHHHHHHHHHhccCC-CCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHH
Q 044030 112 L-----AYGTSAYVTQDDTL--ITTLTVKEAVYYSAQLQLP-DTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKR 183 (449)
Q Consensus 112 ~-----~~~~i~yv~Q~~~l--~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerq 183 (449)
. .++.++||+|++.+ .+.+||+||+.++...... ......+..++++++++.+||.+.+++++.+|||||||
T Consensus 89 ~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkq 168 (279)
T 2ihy_A 89 GYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQ 168 (279)
T ss_dssp -CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHH
T ss_pred cCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHH
Confidence 1 13569999999754 3457999999875321100 01112334567889999999999999999999999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEE--EEEecCCcHHHHhhcCeEEEeeCCeEEEe
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTI--IASIHQPSSEVFQLFHNLCLLSAGQTVYF 261 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~ti--i~~tH~~~~~i~~~~D~v~~l~~G~iv~~ 261 (449)
||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |. || |++|||+ .++..+||++++|++|++++.
T Consensus 169 Rv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~--tv~~iivtHd~-~~~~~~~d~v~~l~~G~i~~~ 244 (279)
T 2ihy_A 169 RVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS-YP--TLAMIYVTHFI-EEITANFSKILLLKDGQSIQQ 244 (279)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-CT--TCEEEEEESCG-GGCCTTCCEEEEEETTEEEEE
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC-CC--EEEEEEEecCH-HHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999865 55 99 9999996 467889999999999999999
Q ss_pred cChhhH
Q 044030 262 GPATAA 267 (449)
Q Consensus 262 g~~~~~ 267 (449)
|+++++
T Consensus 245 g~~~~~ 250 (279)
T 2ihy_A 245 GAVEDI 250 (279)
T ss_dssp EEHHHH
T ss_pred CCHHHH
Confidence 988765
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-48 Score=377.00 Aligned_cols=210 Identities=29% Similarity=0.400 Sum_probs=183.5
Q ss_pred eEEEEeeEEEEeecCccc-ccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccC
Q 044030 37 FLTWKDLTVTIVSNGKKG-SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYG 115 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~ 115 (449)
+|+++||++.| + ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|. +|+|.+ .+
T Consensus 4 ~l~i~~l~~~y------~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~--------~~ 66 (253)
T 2nq2_C 4 ALSVENLGFYY------QAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEV--------YQ 66 (253)
T ss_dssp EEEEEEEEEEE------TTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCS---EEEEEE--------CS
T ss_pred eEEEeeEEEEe------CCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEE--------ec
Confidence 58999999983 3 567999999999999999999999999999999999999874 999982 24
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHHhccCCC-CCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhC
Q 044030 116 TSAYVTQDDTLITTLTVKEAVYYSAQLQLPD-TMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTR 194 (449)
Q Consensus 116 ~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~ 194 (449)
.++||+|++.+++.+||+||+.++....... .......+++++++++.+||.+..++++.+|||||||||+||+||+.+
T Consensus 67 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~ 146 (253)
T 2nq2_C 67 SIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASE 146 (253)
T ss_dssp CEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTT
T ss_pred cEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 6999999999999999999999875322110 011234456789999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 195 PKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 195 P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
|++|||||||+|||+.++..+++.|++++++.|. |||++|||+ .++..+||++++|++|+ ++.|+++++
T Consensus 147 p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~--tvi~vtHd~-~~~~~~~d~v~~l~~G~-~~~g~~~~~ 215 (253)
T 2nq2_C 147 CKLILLDEPTSALDLANQDIVLSLLIDLAQSQNM--TVVFTTHQP-NQVVAIANKTLLLNKQN-FKFGETRNI 215 (253)
T ss_dssp CSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCC--EEEEEESCH-HHHHHHCSEEEEEETTE-EEEEEHHHH
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC--EEEEEecCH-HHHHHhCCEEEEEeCCe-EecCCHHHH
Confidence 9999999999999999999999999999855466 999999996 57889999999999999 999988765
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-48 Score=378.19 Aligned_cols=221 Identities=27% Similarity=0.318 Sum_probs=185.8
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc---
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA--- 113 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~--- 113 (449)
+|+++||++.| +++.+|+||||+|++||+++|+||||||||||+|+|+|+... .+.+|+|.++|.+....
T Consensus 20 ~l~~~~l~~~y------~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~-~p~~G~I~~~g~~i~~~~~~ 92 (267)
T 2zu0_C 20 MLSIKDLHVSV------EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDY-EVTGGTVEFKGKDLLALSPE 92 (267)
T ss_dssp CEEEEEEEEEE------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTC-EEEEEEEEETTEEGGGSCHH
T ss_pred eEEEEeEEEEE------CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCCeEEEECCEECCcCCHH
Confidence 59999999983 456799999999999999999999999999999999998421 12589999999875321
Q ss_pred ---cCcEEEEcCCCCCCCCCCHHHHHHHHHh-c---cCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccCC-CCChHHHHH
Q 044030 114 ---YGTSAYVTQDDTLITTLTVKEAVYYSAQ-L---QLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRIR-RLSGGQKRR 184 (449)
Q Consensus 114 ---~~~i~yv~Q~~~l~~~lTv~e~l~~~~~-~---~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~-~LSgGerqR 184 (449)
.+.++||+|++.+++.+||.|++.+... . ......+..+..++++++++.+||. +..++++. +||||||||
T Consensus 93 ~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QR 172 (267)
T 2zu0_C 93 DRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKR 172 (267)
T ss_dssp HHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHH
T ss_pred HHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHH
Confidence 1249999999999999999999987542 1 1111123344456789999999996 57899997 599999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhh-cCeEEEeeCCeEEEecC
Q 044030 185 VSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQL-FHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 185 v~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~-~D~v~~l~~G~iv~~g~ 263 (449)
|+||+||+.+|++|||||||+|||+.++..+++.|+++++ .|. |||++|||+. .+..+ ||++++|++|++++.|+
T Consensus 173 v~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~-~g~--tviivtHd~~-~~~~~~~d~v~~l~~G~i~~~g~ 248 (267)
T 2zu0_C 173 NDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD-GKR--SFIIVTHYQR-ILDYIKPDYVHVLYQGRIVKSGD 248 (267)
T ss_dssp HHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC-SSC--EEEEECSSGG-GGGTSCCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCC--EEEEEeeCHH-HHHhhcCCEEEEEECCEEEEEcC
Confidence 9999999999999999999999999999999999999864 355 9999999964 56665 89999999999999999
Q ss_pred hhhHH
Q 044030 264 ATAAN 268 (449)
Q Consensus 264 ~~~~~ 268 (449)
++++.
T Consensus 249 ~~~~~ 253 (267)
T 2zu0_C 249 FTLVK 253 (267)
T ss_dssp TTHHH
T ss_pred HHHHh
Confidence 88764
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-48 Score=382.22 Aligned_cols=217 Identities=24% Similarity=0.353 Sum_probs=181.5
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.|+++||++. +. + .+.+.+|+||||+|++||+++|+||||||||||||+|+|+++|. +|+|.++|.+...
T Consensus 16 ~l~~~~l~~~-y~-~-~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~ 89 (271)
T 2ixe_A 16 LVKFQDVSFA-YP-N-HPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPLVQYDHH 89 (271)
T ss_dssp CEEEEEEEEC-CT-T-CTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHH
T ss_pred eEEEEEEEEE-eC-C-CCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEcccCCHH
Confidence 5999999998 21 1 01267999999999999999999999999999999999999874 9999999987632
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHH-----HHHHHHHHHHHc--CCchhhCccCCCCChHHHHH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSD-----KKERAEVTIREM--GLQDAMNTRIRRLSGGQKRR 184 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~-----~~~~v~~~l~~l--gL~~~~~~~~~~LSgGerqR 184 (449)
.++.++||+|++.+++ .||+||+.++.... . .... ....+.++++.+ |+....++++.+||||||||
T Consensus 90 ~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~---~-~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QR 164 (271)
T 2ixe_A 90 YLHTQVAAVGQEPLLFG-RSFRENIAYGLTRT---P-TMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQA 164 (271)
T ss_dssp HHHHHEEEECSSCCCCS-SBHHHHHHTTCSSC---C-CHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHH
T ss_pred HHhccEEEEecCCcccc-ccHHHHHhhhcccC---C-hHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHH
Confidence 1246999999998887 59999998864211 1 1011 122356778888 78888899999999999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecCh
Q 044030 185 VSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264 (449)
Q Consensus 185 v~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~ 264 (449)
|+|||||+.+|++|||||||+|||+.++..+++.|++++++.|. |||++||++ ..+ ..||++++|++|+++..|++
T Consensus 165 v~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~--tviivtHd~-~~~-~~~d~v~~l~~G~i~~~g~~ 240 (271)
T 2ixe_A 165 VALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASR--TVLLITQQL-SLA-ERAHHILFLKEGSVCEQGTH 240 (271)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTS--EEEEECSCH-HHH-TTCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCC--EEEEEeCCH-HHH-HhCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999999998754455 999999996 345 45999999999999999998
Q ss_pred hhHH
Q 044030 265 TAAN 268 (449)
Q Consensus 265 ~~~~ 268 (449)
+++.
T Consensus 241 ~~l~ 244 (271)
T 2ixe_A 241 LQLM 244 (271)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-47 Score=370.54 Aligned_cols=205 Identities=26% Similarity=0.396 Sum_probs=182.0
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
+|+++||++. .+|+|+||++++||+++|+||||||||||||+|+|+++| . |+|.++|.+...
T Consensus 4 ~l~~~~l~~~----------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~-G~i~~~g~~~~~~~~~ 69 (249)
T 2qi9_C 4 VMQLQDVAES----------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---K-GSIQFAGQPLEAWSAT 69 (249)
T ss_dssp EEEEEEEEET----------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---E-EEEEETTEEGGGSCHH
T ss_pred EEEEEceEEE----------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---C-eEEEECCEECCcCCHH
Confidence 5889999862 589999999999999999999999999999999999876 6 999999987532
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEI 191 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL 191 (449)
.++.++||+|++.+++.+||+||+.++... ... +++++++++.+||.+..++++.+|||||||||+||+||
T Consensus 70 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~----~~~----~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL 141 (249)
T 2qi9_C 70 KLALHRAYLSQQQTPPFATPVWHYLTLHQHD----KTR----TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVV 141 (249)
T ss_dssp HHHHHEEEECSCCCCCTTCBHHHHHHTTCSS----TTC----HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHH
T ss_pred HHhceEEEECCCCccCCCCcHHHHHHHhhcc----CCc----HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHH
Confidence 124699999999999999999999875211 111 45688999999999999999999999999999999999
Q ss_pred HhCCC-------EEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecCh
Q 044030 192 LTRPK-------LLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264 (449)
Q Consensus 192 ~~~P~-------llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~ 264 (449)
+.+|+ +|||||||+|||+.++..+++.|++++++ |. |||++|||+ ..+..+||++++|++|++++.|++
T Consensus 142 ~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~--tviivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~ 217 (249)
T 2qi9_C 142 LQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ-GL--AIVMSSHDL-NHTLRHAHRAWLLKGGKMLASGRR 217 (249)
T ss_dssp HHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHT-TC--EEEEECSCH-HHHHHHCSEEEEEETTEEEEEEEH
T ss_pred HcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhC-CC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999 99999999999999999999999999755 55 999999996 577899999999999999999988
Q ss_pred hhH
Q 044030 265 TAA 267 (449)
Q Consensus 265 ~~~ 267 (449)
+++
T Consensus 218 ~~~ 220 (249)
T 2qi9_C 218 EEV 220 (249)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-48 Score=382.50 Aligned_cols=210 Identities=27% Similarity=0.404 Sum_probs=175.1
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
..|+++||++. +. +.+.+|+||||+|++||++||+||||||||||+++|+|+++|. +|+|.++|.++..
T Consensus 52 ~~i~~~~vs~~-y~----~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~G~~i~~~~~ 123 (306)
T 3nh6_A 52 GRIEFENVHFS-YA----DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS---SGCIRIDGQDISQVTQ 123 (306)
T ss_dssp CCEEEEEEEEE-SS----TTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCS---EEEEEETTEETTSBCH
T ss_pred CeEEEEEEEEE-cC----CCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CcEEEECCEEcccCCH
Confidence 36999999998 32 3467999999999999999999999999999999999999874 9999999998642
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcC-----------CchhhCccCCCCCh
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMG-----------LQDAMNTRIRRLSG 179 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-----------L~~~~~~~~~~LSg 179 (449)
.++.++||+|++.+|+. ||+||+.|+... ... +.+.+.++..+ ++...++.+.+|||
T Consensus 124 ~~~r~~i~~v~Q~~~lf~~-Tv~eNi~~~~~~-----~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSG 193 (306)
T 3nh6_A 124 ASLRSHIGVVPQDTVLFND-TIADNIRYGRVT-----AGN----DEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSG 193 (306)
T ss_dssp HHHHHTEEEECSSCCCCSE-EHHHHHHTTSTT-----CCH----HHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCH
T ss_pred HHHhcceEEEecCCccCcc-cHHHHHHhhccc-----CCH----HHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCH
Confidence 13469999999999864 999999886421 112 22333444444 44445566689999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEE
Q 044030 180 GQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTV 259 (449)
Q Consensus 180 GerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv 259 (449)
||||||+|||||+.+|+||||||||||||+.++..|++.|+++.+ ++ |+|++||++ +.+.. ||+|++|++|+++
T Consensus 194 GqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~--~~--Tvi~itH~l-~~~~~-aD~i~vl~~G~iv 267 (306)
T 3nh6_A 194 GEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA--NR--TTIVVAHRL-STVVN-ADQILVIKDGCIV 267 (306)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT--TS--EEEEECCSH-HHHHT-CSEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC--CC--EEEEEEcCh-HHHHc-CCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999873 34 999999996 45654 9999999999999
Q ss_pred EecChhhHHH
Q 044030 260 YFGPATAANE 269 (449)
Q Consensus 260 ~~g~~~~~~~ 269 (449)
+.|+++++..
T Consensus 268 ~~G~~~el~~ 277 (306)
T 3nh6_A 268 ERGRHEALLS 277 (306)
T ss_dssp EEECHHHHHH
T ss_pred EECCHHHHHh
Confidence 9999988753
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-47 Score=369.30 Aligned_cols=209 Identities=27% Similarity=0.430 Sum_probs=175.7
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.++++||++. +. .+++.+|+||||+|++||+++|+||||||||||||+|+|+++|. +|+|.++|.+...
T Consensus 7 ~~~~~~l~~~-y~---~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~i~g~~~~~~~~~ 79 (247)
T 2ff7_A 7 DITFRNIRFR-YK---PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPN 79 (247)
T ss_dssp EEEEEEEEEE-SS---TTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHH
T ss_pred ceeEEEEEEE-eC---CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHH
Confidence 5899999998 21 12467999999999999999999999999999999999999874 9999999987632
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhC-----------ccCCCCChH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMN-----------TRIRRLSGG 180 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-----------~~~~~LSgG 180 (449)
.++.++||+|++.+++ .||+||+.++.. ... .+++.++++.+++.+..+ +++.+||||
T Consensus 80 ~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgG 149 (247)
T 2ff7_A 80 WLRRQVGVVLQDNVLLN-RSIIDNISLANP-----GMS----VEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGG 149 (247)
T ss_dssp HHHHHEEEECSSCCCTT-SBHHHHHTTTCT-----TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHH
T ss_pred HHHhcEEEEeCCCcccc-ccHHHHHhccCC-----CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHH
Confidence 1246999999998886 599999987521 111 234566777777765554 445899999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 181 erqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
|||||+|||||+.+|++|||||||+|||+.++..+++.|++++ + |. |||++||++. .+ ..||++++|++|++++
T Consensus 150 q~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~-g~--tviivtH~~~-~~-~~~d~v~~l~~G~i~~ 223 (247)
T 2ff7_A 150 QRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-K-GR--TVIIIAHRLS-TV-KNADRIIVMEKGKIVE 223 (247)
T ss_dssp HHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-T-TS--EEEEECSSGG-GG-TTSSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-C-CC--EEEEEeCCHH-HH-HhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999995 4 44 9999999974 45 4699999999999999
Q ss_pred ecChhhHH
Q 044030 261 FGPATAAN 268 (449)
Q Consensus 261 ~g~~~~~~ 268 (449)
.|+++++.
T Consensus 224 ~g~~~~l~ 231 (247)
T 2ff7_A 224 QGKHKELL 231 (247)
T ss_dssp EECHHHHH
T ss_pred ECCHHHHH
Confidence 99987763
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-48 Score=365.12 Aligned_cols=204 Identities=24% Similarity=0.343 Sum_probs=175.2
Q ss_pred CCeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc
Q 044030 34 DGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA 113 (449)
Q Consensus 34 ~~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~ 113 (449)
.+..|+++||++. + ++ .+|+|+||++++||+++|+||||||||||||+|+|+++|. +|+|.++|.+....
T Consensus 7 ~~~~l~~~~ls~~-y-----~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~ 76 (214)
T 1sgw_A 7 HGSKLEIRDLSVG-Y-----DK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKV 76 (214)
T ss_dssp --CEEEEEEEEEE-S-----SS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGG
T ss_pred CCceEEEEEEEEE-e-----CC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEhhhh
Confidence 4567999999998 2 34 7999999999999999999999999999999999999874 99999999876422
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh
Q 044030 114 YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT 193 (449)
Q Consensus 114 ~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~ 193 (449)
++.++||+|++.+++.+||+||+.++...+. . ..+ +++++++++.+||.+. ++++.+|||||||||+||+||+.
T Consensus 77 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~---~-~~~-~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~ 150 (214)
T 1sgw_A 77 KGKIFFLPEEIIVPRKISVEDYLKAVASLYG---V-KVN-KNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLV 150 (214)
T ss_dssp GGGEEEECSSCCCCTTSBHHHHHHHHHHHTT---C-CCC-HHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTS
T ss_pred cCcEEEEeCCCcCCCCCCHHHHHHHHHHhcC---C-chH-HHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHh
Confidence 3579999999999999999999998765431 1 112 4568889999999988 99999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeE
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQT 258 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~i 258 (449)
+|++|||||||+|||+.++..+++.|++++++ |. |||++||++. ++..+||+++++. |+|
T Consensus 151 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~-g~--tiiivtHd~~-~~~~~~d~v~~~~-~~~ 210 (214)
T 1sgw_A 151 NAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KG--IVIISSREEL-SYCDVNENLHKYS-TKI 210 (214)
T ss_dssp CCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH-HS--EEEEEESSCC-TTSSEEEEGGGGB-C--
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHhC-CC--EEEEEeCCHH-HHHHhCCEEEEeC-Ccc
Confidence 99999999999999999999999999999754 45 9999999975 6888889888654 443
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-47 Score=368.10 Aligned_cols=208 Identities=25% Similarity=0.346 Sum_probs=181.0
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc--ccC
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--AYG 115 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--~~~ 115 (449)
|+++||++.| .. ..+.+.+|+|+||+++ ||+++|+||||||||||||+|+|++ |+ +|+|.++|.+... .++
T Consensus 2 l~~~~l~~~y-~~-~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~---~G~I~~~g~~~~~~~~~~ 74 (263)
T 2pjz_A 2 IQLKNVGITL-SG-KGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY---SGNIFINGMEVRKIRNYI 74 (263)
T ss_dssp EEEEEEEEEE-EE-ETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC---EEEEEETTEEGGGCSCCT
T ss_pred EEEEEEEEEe-CC-CCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC---CcEEEECCEECcchHHhh
Confidence 7899999983 21 0011679999999999 9999999999999999999999999 84 9999999987531 135
Q ss_pred cEE-EEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccCCCCChHHHHHHHHHHHHHh
Q 044030 116 TSA-YVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSGGQKRRVSISIEILT 193 (449)
Q Consensus 116 ~i~-yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGerqRv~ia~aL~~ 193 (449)
.++ ||+|++.+ .+||+||+.++..++ .. .+++++++++.+||. +..++++.+|||||||||+||+||+.
T Consensus 75 ~i~~~v~Q~~~l--~~tv~enl~~~~~~~---~~----~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~ 145 (263)
T 2pjz_A 75 RYSTNLPEAYEI--GVTVNDIVYLYEELK---GL----DRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALAS 145 (263)
T ss_dssp TEEECCGGGSCT--TSBHHHHHHHHHHHT---CC----CHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHT
T ss_pred heEEEeCCCCcc--CCcHHHHHHHhhhhc---ch----HHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHh
Confidence 799 99999887 789999999876542 11 135688899999999 99999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcC-eEEEeeCCeEEEecChhhHH
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFH-NLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D-~v~~l~~G~iv~~g~~~~~~ 268 (449)
+|++|||||||+|||+.++..+++.|++++ . |||++|||+ .++..+|| ++++|++|++++.|+++++.
T Consensus 146 ~p~lllLDEPts~LD~~~~~~l~~~L~~~~-----~-tviivtHd~-~~~~~~~d~~i~~l~~G~i~~~g~~~~l~ 214 (263)
T 2pjz_A 146 QPEIVGLDEPFENVDAARRHVISRYIKEYG-----K-EGILVTHEL-DMLNLYKEYKAYFLVGNRLQGPISVSELL 214 (263)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHSC-----S-EEEEEESCG-GGGGGCTTSEEEEEETTEEEEEEEHHHHH
T ss_pred CCCEEEEECCccccCHHHHHHHHHHHHHhc-----C-cEEEEEcCH-HHHHHhcCceEEEEECCEEEEecCHHHHH
Confidence 999999999999999999999999999874 2 999999996 46788999 99999999999999998765
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-47 Score=367.17 Aligned_cols=208 Identities=26% Similarity=0.386 Sum_probs=176.3
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
|+++||++. +. +++.+|+||||+|++||+++|+||||||||||||+|+|+++|. +|+|.++|.+...
T Consensus 2 l~~~~l~~~-y~----~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 73 (243)
T 1mv5_A 2 LSARHVDFA-YD----DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLEN 73 (243)
T ss_dssp EEEEEEEEC-SS----SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSC
T ss_pred EEEEEEEEE-eC----CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHH
Confidence 789999997 21 3467999999999999999999999999999999999999874 8999999987531
Q ss_pred ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCc-----------cCCCCChHH
Q 044030 113 AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNT-----------RIRRLSGGQ 181 (449)
Q Consensus 113 ~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~-----------~~~~LSgGe 181 (449)
.++.++||+|++.+++. ||+||+.++... ... ++++.++++.+++.+..++ ++.+|||||
T Consensus 74 ~~~~i~~v~q~~~l~~~-tv~enl~~~~~~----~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq 144 (243)
T 1mv5_A 74 WRSQIGFVSQDSAIMAG-TIRENLTYGLEG----DYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQ 144 (243)
T ss_dssp CTTTCCEECCSSCCCCE-EHHHHTTSCTTS----CSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHH
T ss_pred HHhhEEEEcCCCccccc-cHHHHHhhhccC----CCC----HHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHH
Confidence 13569999999988874 999999775211 111 2346778888888776554 457999999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEe
Q 044030 182 KRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYF 261 (449)
Q Consensus 182 rqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~ 261 (449)
||||+|||||+.+|++|||||||+|||+.++..+++.|++++ + |. |||++||++ ..+ ..||++++|++|++++.
T Consensus 145 ~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~-~~--tvi~vtH~~-~~~-~~~d~v~~l~~G~i~~~ 218 (243)
T 1mv5_A 145 RQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-K-GR--TTLVIAHRL-STI-VDADKIYFIEKGQITGS 218 (243)
T ss_dssp HHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-T-TS--EEEEECCSH-HHH-HHCSEEEEEETTEECCC
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-C-CC--EEEEEeCCh-HHH-HhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999999997 4 44 999999996 345 46999999999999999
Q ss_pred cChhhHH
Q 044030 262 GPATAAN 268 (449)
Q Consensus 262 g~~~~~~ 268 (449)
|+++++.
T Consensus 219 g~~~~~~ 225 (243)
T 1mv5_A 219 GKHNELV 225 (243)
T ss_dssp SCHHHHH
T ss_pred CCHHHHH
Confidence 9987764
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-46 Score=361.54 Aligned_cols=210 Identities=25% Similarity=0.378 Sum_probs=174.3
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
..|+++||++. +. + ...+.+|+||||+|++||+++|+||||||||||+|+|+|++++ +|+|.++|.+...
T Consensus 16 ~~l~i~~l~~~-y~-~-~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~----~G~I~i~g~~i~~~~~ 88 (260)
T 2ghi_A 16 VNIEFSDVNFS-YP-K-QTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA----EGDIKIGGKNVNKYNR 88 (260)
T ss_dssp CCEEEEEEEEC-CT-T-CCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC----EEEEEETTEEGGGBCH
T ss_pred CeEEEEEEEEE-eC-C-CCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC----CeEEEECCEEhhhcCH
Confidence 35899999998 21 1 0124699999999999999999999999999999999999853 7999999987532
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhh-----------CccCCCCCh
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAM-----------NTRIRRLSG 179 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-----------~~~~~~LSg 179 (449)
.++.++||+|++.+++ .||+||+.++.. ... .+++.++++.+++.+.. ++++.+|||
T Consensus 89 ~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSg 158 (260)
T 2ghi_A 89 NSIRSIIGIVPQDTILFN-ETIKYNILYGKL-----DAT----DEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSG 158 (260)
T ss_dssp HHHHTTEEEECSSCCCCS-EEHHHHHHTTCT-----TCC----HHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCH
T ss_pred HHHhccEEEEcCCCcccc-cCHHHHHhccCC-----CCC----HHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCH
Confidence 1356999999999886 599999987521 111 23456677777765432 456789999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEE
Q 044030 180 GQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTV 259 (449)
Q Consensus 180 GerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv 259 (449)
||||||+|||||+.+|++|||||||+|||+.++..+++.|++++ + |. |||++||++. .+ ..||++++|++|+++
T Consensus 159 GqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~-~-~~--tviivtH~~~-~~-~~~d~i~~l~~G~i~ 232 (260)
T 2ghi_A 159 GERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR-K-NR--TLIIIAHRLS-TI-SSAESIILLNKGKIV 232 (260)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHT-T-TS--EEEEECSSGG-GS-TTCSEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhc-C-CC--EEEEEcCCHH-HH-HhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999996 3 44 9999999974 45 469999999999999
Q ss_pred EecChhhHH
Q 044030 260 YFGPATAAN 268 (449)
Q Consensus 260 ~~g~~~~~~ 268 (449)
..|+++++.
T Consensus 233 ~~g~~~~l~ 241 (260)
T 2ghi_A 233 EKGTHKDLL 241 (260)
T ss_dssp EEECHHHHH
T ss_pred EECCHHHHH
Confidence 999988764
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-45 Score=351.09 Aligned_cols=200 Identities=24% Similarity=0.395 Sum_probs=165.3
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCc
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGT 116 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~ 116 (449)
.|+++||++. +. .+++.+|+||||+|++||+++|+||||||||||+|+|+|+++|. +|+|.++| .
T Consensus 6 ~l~~~~l~~~-y~---~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g--------~ 70 (229)
T 2pze_A 6 EVVMENVTAF-WE---EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG--------R 70 (229)
T ss_dssp EEEEEEEEEC-SS---TTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEECS--------C
T ss_pred eEEEEEEEEE-eC---CCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---ccEEEECC--------E
Confidence 5899999998 21 13467999999999999999999999999999999999999874 99999998 3
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhh-----------CccCCCCChHHHHHH
Q 044030 117 SAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAM-----------NTRIRRLSGGQKRRV 185 (449)
Q Consensus 117 i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-----------~~~~~~LSgGerqRv 185 (449)
++|++|++.+++. ||+||+.++.. ... ....+.++.+++.+.. ++++.+|||||||||
T Consensus 71 i~~v~q~~~~~~~-tv~enl~~~~~------~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv 139 (229)
T 2pze_A 71 ISFCSQFSWIMPG-TIKENIIFGVS------YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARI 139 (229)
T ss_dssp EEEECSSCCCCSB-CHHHHHHTTSC------CCH----HHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHH
T ss_pred EEEEecCCcccCC-CHHHHhhccCC------cCh----HHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHH
Confidence 8999999998886 99999987531 111 1233445555554433 334589999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecCh
Q 044030 186 SISIEILTRPKLLFLDEPTSGLDSAASYYVMSR-IAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264 (449)
Q Consensus 186 ~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~-l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~ 264 (449)
+|||||+.+|+++||||||+|||+.++..+++. +++++ + |. |||++||++ ..+ ..||++++|++|++++.|++
T Consensus 140 ~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~-~~--tvi~vtH~~-~~~-~~~d~v~~l~~G~i~~~g~~ 213 (229)
T 2pze_A 140 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-A-NK--TRILVTSKM-EHL-KKADKILILHEGSSYFYGTF 213 (229)
T ss_dssp HHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-T-TS--EEEEECCCH-HHH-HHCSEEEEEETTEEEEEECH
T ss_pred HHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-C-CC--EEEEEcCCh-HHH-HhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999997 45554 3 44 999999996 455 46999999999999999998
Q ss_pred hhHH
Q 044030 265 TAAN 268 (449)
Q Consensus 265 ~~~~ 268 (449)
+++.
T Consensus 214 ~~~~ 217 (229)
T 2pze_A 214 SELQ 217 (229)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7764
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-46 Score=381.64 Aligned_cols=208 Identities=22% Similarity=0.308 Sum_probs=180.2
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
..|+++||+++ +. .+++.+|+||||+|++||+++|+||||||||||||+|+|+++ .+|+|.++|++...
T Consensus 18 ~~i~~~~l~~~-y~---~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~----~~G~I~i~G~~i~~~~~ 89 (390)
T 3gd7_A 18 GQMTVKDLTAK-YT---EGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN----TEGEIQIDGVSWDSITL 89 (390)
T ss_dssp CCEEEEEEEEE-SS---SSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE----EEEEEEESSCBTTSSCH
T ss_pred CeEEEEEEEEE-ec---CCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC----CCeEEEECCEECCcCCh
Confidence 46899999998 32 145679999999999999999999999999999999999975 38999999987532
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCC-----------CCh
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRR-----------LSG 179 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~-----------LSg 179 (449)
.++.++||||++.+|+ +||+||+.+.. .. .++++.++++.++|.+..++++.+ |||
T Consensus 90 ~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~~----~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSG 158 (390)
T 3gd7_A 90 EQWRKAFGVIPQKVFIFS-GTFRKNLDPNA------AH----SDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSH 158 (390)
T ss_dssp HHHHHTEEEESCCCCCCS-EEHHHHHCTTC------CS----CHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCH
T ss_pred HHHhCCEEEEcCCcccCc-cCHHHHhhhcc------cc----CHHHHHHHHHHhCCHHHHhhcccccccccccccccCCH
Confidence 1256999999999997 59999995321 11 134578899999999999999988 999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEE
Q 044030 180 GQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTV 259 (449)
Q Consensus 180 GerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv 259 (449)
||||||+|||||+.+|++|||||||||||+..+..+.+.|+++. . + +|+|++|||+. ....||+|++|++|+++
T Consensus 159 GqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~-~--~tvi~vtHd~e--~~~~aDri~vl~~G~i~ 232 (390)
T 3gd7_A 159 GHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-A-D--CTVILCEARIE--AMLECDQFLVIEENKVR 232 (390)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-T-T--SCEEEECSSSG--GGTTCSEEEEEETTEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-C-C--CEEEEEEcCHH--HHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999864 2 3 49999999963 45679999999999999
Q ss_pred EecChhhHH
Q 044030 260 YFGPATAAN 268 (449)
Q Consensus 260 ~~g~~~~~~ 268 (449)
..|+++++.
T Consensus 233 ~~g~~~el~ 241 (390)
T 3gd7_A 233 QYDSILELY 241 (390)
T ss_dssp EESSHHHHH
T ss_pred EECCHHHHH
Confidence 999998874
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-45 Score=353.44 Aligned_cols=203 Identities=23% Similarity=0.368 Sum_probs=164.4
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCc
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGT 116 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~ 116 (449)
.|+++||++. +. .+++.+|+|+||+|++||+++|+||||||||||+|+|+|+++| .+|+|.++| .
T Consensus 3 ~l~~~~l~~~-y~---~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~I~~~g--------~ 67 (237)
T 2cbz_A 3 SITVRNATFT-WA---RSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK---VEGHVAIKG--------S 67 (237)
T ss_dssp CEEEEEEEEE-SC---TTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEE---EEEEEEECS--------C
T ss_pred eEEEEEEEEE-eC---CCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECC--------E
Confidence 4899999998 21 1146799999999999999999999999999999999999977 499999998 3
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHH---HHHHcCCc-----hhhCccCCCCChHHHHHHHHH
Q 044030 117 SAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEV---TIREMGLQ-----DAMNTRIRRLSGGQKRRVSIS 188 (449)
Q Consensus 117 i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~---~l~~lgL~-----~~~~~~~~~LSgGerqRv~ia 188 (449)
++||+|++.+ +.+||+||+.++... .... .+++.+ +.+.+++. ...++++.+|||||||||+||
T Consensus 68 i~~v~Q~~~~-~~~tv~enl~~~~~~------~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lA 139 (237)
T 2cbz_A 68 VAYVPQQAWI-QNDSLRENILFGCQL------EEPY-YRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLA 139 (237)
T ss_dssp EEEECSSCCC-CSEEHHHHHHTTSCC------CTTH-HHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHH
T ss_pred EEEEcCCCcC-CCcCHHHHhhCcccc------CHHH-HHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHH
Confidence 8999999865 578999999875321 1111 111111 22233321 135788899999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHH---HHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChh
Q 044030 189 IEILTRPKLLFLDEPTSGLDSAASYYVMSRIA---KLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPAT 265 (449)
Q Consensus 189 ~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~---~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~ 265 (449)
|||+.+|++|||||||+|||+.++..+++.|. +++ + |. |||++||++. .+ ..||++++|++|+++..|+++
T Consensus 140 raL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~-~~--tviivtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~ 213 (237)
T 2cbz_A 140 RAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-K-NK--TRILVTHSMS-YL-PQVDVIIVMSGGKISEMGSYQ 213 (237)
T ss_dssp HHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-T-TS--EEEEECSCST-TG-GGSSEEEEEETTEEEEEECHH
T ss_pred HHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-C-CC--EEEEEecChH-HH-HhCCEEEEEeCCEEEEeCCHH
Confidence 99999999999999999999999999999995 343 2 44 9999999975 44 579999999999999999988
Q ss_pred hHH
Q 044030 266 AAN 268 (449)
Q Consensus 266 ~~~ 268 (449)
++.
T Consensus 214 ~~~ 216 (237)
T 2cbz_A 214 ELL 216 (237)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-44 Score=388.18 Aligned_cols=215 Identities=23% Similarity=0.392 Sum_probs=176.5
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
..++++|++++ +. .+.+.+|+|+||++++||++||+||||||||||+++|+|+++|. +|+|.+||.+...
T Consensus 340 ~~i~~~~v~~~-y~---~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~---~G~i~i~g~~i~~~~~ 412 (587)
T 3qf4_A 340 GSVSFENVEFR-YF---ENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPE---RGRVEVDELDVRTVKL 412 (587)
T ss_dssp CCEEEEEEEEC-SS---SSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCS---EEEEEESSSBGGGBCH
T ss_pred CcEEEEEEEEE-cC---CCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CcEEEECCEEcccCCH
Confidence 46999999998 32 13467999999999999999999999999999999999999874 9999999987642
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHH-----HHHHHHHc--CCchhhCccCCCCChHHHH
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKER-----AEVTIREM--GLQDAMNTRIRRLSGGQKR 183 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~-----v~~~l~~l--gL~~~~~~~~~~LSgGerq 183 (449)
.++.++||+|++.+++. ||+||+.++.. ..+.++..+. +.+.++.+ |++...++++.+|||||||
T Consensus 413 ~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~-----~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQ 486 (587)
T 3qf4_A 413 KDLRGHISAVPQETVLFSG-TIKENLKWGRE-----DATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQ 486 (587)
T ss_dssp HHHHHHEEEECSSCCCCSE-EHHHHHTTTCS-----SCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHH
T ss_pred HHHHhheEEECCCCcCcCc-cHHHHHhccCC-----CCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHH
Confidence 13569999999999976 99999977532 1122221111 12223333 5555667778999999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
|++|||||+.+|++++||||||+||+.++..+.+.|+++. + | +|+|++||+++ . ...||+|++|++|++++.|+
T Consensus 487 rv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~--~tvi~itH~l~-~-~~~~d~i~vl~~G~i~~~g~ 560 (587)
T 3qf4_A 487 RLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-K-G--CTTFIITQKIP-T-ALLADKILVLHEGKVAGFGT 560 (587)
T ss_dssp HHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-T-T--CEEEEEESCHH-H-HTTSSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-C-C--CEEEEEecChH-H-HHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999985 3 4 49999999974 4 46899999999999999999
Q ss_pred hhhHHH
Q 044030 264 ATAANE 269 (449)
Q Consensus 264 ~~~~~~ 269 (449)
++++.+
T Consensus 561 ~~el~~ 566 (587)
T 3qf4_A 561 HKELLE 566 (587)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988753
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-43 Score=378.73 Aligned_cols=211 Identities=25% Similarity=0.358 Sum_probs=177.0
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
..++++||+++| .. +++.+|+|+|+++++||++||+||||||||||+|+|+|+++|+ +|+|.+||.+...
T Consensus 340 ~~i~~~~v~~~y-~~---~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~ 412 (582)
T 3b5x_A 340 GEVDVKDVTFTY-QG---KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD---SGSICLDGHDVRDYKL 412 (582)
T ss_pred CeEEEEEEEEEc-CC---CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEhhhCCH
Confidence 369999999983 21 1267999999999999999999999999999999999999874 8999999987532
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhC-----------ccCCCCCh
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMN-----------TRIRRLSG 179 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-----------~~~~~LSg 179 (449)
.++.++||+|++.+++. ||+||+.++.. + ..+ +++++++++.+++.+..+ +++.+|||
T Consensus 413 ~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~-~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSg 483 (582)
T 3b5x_A 413 TNLRRHFALVSQNVHLFND-TIANNIAYAAE---G-EYT----REQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSG 483 (582)
T ss_pred HHHhcCeEEEcCCCccccc-cHHHHHhccCC---C-CCC----HHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCH
Confidence 13579999999999875 99999988531 1 112 234666777776665544 34579999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEE
Q 044030 180 GQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTV 259 (449)
Q Consensus 180 GerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv 259 (449)
|||||++|||||+.+|++++|||||||||+.++..+.+.|++++ + |+ |+|++||++. .+ +.||++++|++|+++
T Consensus 484 Gq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~--tvi~itH~~~-~~-~~~d~i~~l~~G~i~ 557 (582)
T 3b5x_A 484 GQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ-K-NK--TVLVIAHRLS-TI-EQADEILVVDEGEII 557 (582)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-C-CC--EEEEEecCHH-HH-HhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999986 3 44 9999999974 44 579999999999999
Q ss_pred EecChhhHH
Q 044030 260 YFGPATAAN 268 (449)
Q Consensus 260 ~~g~~~~~~ 268 (449)
+.|+++++.
T Consensus 558 ~~g~~~~l~ 566 (582)
T 3b5x_A 558 ERGRHADLL 566 (582)
T ss_pred EECCHHHHH
Confidence 999998764
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-43 Score=379.09 Aligned_cols=210 Identities=27% Similarity=0.387 Sum_probs=174.6
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
..++++|++++ +. .+.+.+|+|+||++++||++||+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 338 ~~i~~~~v~~~-y~---~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~ 410 (578)
T 4a82_A 338 GRIDIDHVSFQ-YN---DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLT 410 (578)
T ss_dssp CCEEEEEEEEC-SC---SSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCH
T ss_pred CeEEEEEEEEE-cC---CCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCH
Confidence 46999999998 32 13457999999999999999999999999999999999999874 9999999998642
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchh-----------hCccCCCCCh
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDA-----------MNTRIRRLSG 179 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-----------~~~~~~~LSg 179 (449)
.++.++||+|++.+++. ||+||+.++.. ..+. +++.+.++..++.+. .+++..+|||
T Consensus 411 ~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSg 480 (578)
T 4a82_A 411 GSLRNQIGLVQQDNILFSD-TVKENILLGRP-----TATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSG 480 (578)
T ss_dssp HHHHHTEEEECSSCCCCSS-BHHHHHGGGCS-----SCCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCH
T ss_pred HHHhhheEEEeCCCccCcc-cHHHHHhcCCC-----CCCH----HHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCH
Confidence 13469999999999987 99999987631 1122 234455555555433 3444578999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEE
Q 044030 180 GQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTV 259 (449)
Q Consensus 180 GerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv 259 (449)
|||||++|||||+.+|++++|||||||||+.++..+.+.|+++.+ ++|+|++||+++ .+ ..||++++|++|+++
T Consensus 481 Gq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~----~~t~i~itH~l~-~~-~~~d~i~~l~~G~i~ 554 (578)
T 4a82_A 481 GQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK----DRTTLIVAHRLS-TI-THADKIVVIENGHIV 554 (578)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT----TSEEEEECSSGG-GT-TTCSEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC----CCEEEEEecCHH-HH-HcCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999863 349999999975 44 569999999999999
Q ss_pred EecChhhHH
Q 044030 260 YFGPATAAN 268 (449)
Q Consensus 260 ~~g~~~~~~ 268 (449)
+.|+++++.
T Consensus 555 ~~g~~~el~ 563 (578)
T 4a82_A 555 ETGTHRELI 563 (578)
T ss_dssp EEECHHHHH
T ss_pred EECCHHHHH
Confidence 999998875
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-43 Score=378.49 Aligned_cols=212 Identities=25% Similarity=0.361 Sum_probs=177.1
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
..++++||++. +. + +++.+|+|+||++++||++||+||||||||||+|+|+|+++|+ +|+|.+||.+...
T Consensus 340 ~~i~~~~v~~~-y~-~--~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~~~~~~~ 412 (582)
T 3b60_A 340 GDLEFRNVTFT-YP-G--REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTL 412 (582)
T ss_dssp CCEEEEEEEEC-SS-S--SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCH
T ss_pred CcEEEEEEEEE-cC-C--CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCC---CCeEEECCEEccccCH
Confidence 35999999998 21 0 1267999999999999999999999999999999999999874 9999999998632
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhh-----------CccCCCCCh
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAM-----------NTRIRRLSG 179 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-----------~~~~~~LSg 179 (449)
.++.++||+|++.+++. ||+||+.++.. + ..+ ++++.++++.+++.+.. ++++.+|||
T Consensus 413 ~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSg 483 (582)
T 3b60_A 413 ASLRNQVALVSQNVHLFND-TVANNIAYART---E-EYS----REQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSG 483 (582)
T ss_dssp HHHHHTEEEECSSCCCCSS-BHHHHHHTTTT---S-CCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCH
T ss_pred HHHHhhCeEEccCCcCCCC-CHHHHHhccCC---C-CCC----HHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCH
Confidence 12469999999999885 99999988531 1 122 23456667766665543 345589999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEE
Q 044030 180 GQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTV 259 (449)
Q Consensus 180 GerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv 259 (449)
|||||++|||||+.+|++++||||||+||+.++..+.+.|++++ + |+ |+|++||++. .+ +.||++++|++|+++
T Consensus 484 Gq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~--tvi~itH~~~-~~-~~~d~i~~l~~G~i~ 557 (582)
T 3b60_A 484 GQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-K-NR--TSLVIAHRLS-TI-EQADEIVVVEDGIIV 557 (582)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH-T-TS--EEEEECSCGG-GT-TTCSEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-C-CC--EEEEEeccHH-HH-HhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999996 3 44 9999999974 44 579999999999999
Q ss_pred EecChhhHHH
Q 044030 260 YFGPATAANE 269 (449)
Q Consensus 260 ~~g~~~~~~~ 269 (449)
+.|+++++.+
T Consensus 558 ~~g~~~~l~~ 567 (582)
T 3b60_A 558 ERGTHSELLA 567 (582)
T ss_dssp EEECHHHHHH
T ss_pred EecCHHHHHH
Confidence 9999987753
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-43 Score=347.17 Aligned_cols=195 Identities=24% Similarity=0.408 Sum_probs=152.2
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCc
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGT 116 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~ 116 (449)
.|+++||++. .+.+|+|+||+|++||+++|+||||||||||||+|+|+++| .+|+|.++| .
T Consensus 40 ~l~~~~l~~~--------~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p---~~G~I~~~g--------~ 100 (290)
T 2bbs_A 40 SLSFSNFSLL--------GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP---SEGKIKHSG--------R 100 (290)
T ss_dssp ------------------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCE---EEEEEECCS--------C
T ss_pred eEEEEEEEEc--------CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC---CCcEEEECC--------E
Confidence 5899999975 14699999999999999999999999999999999999977 499999998 3
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhh-----------CccCCCCChHHHHHH
Q 044030 117 SAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAM-----------NTRIRRLSGGQKRRV 185 (449)
Q Consensus 117 i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-----------~~~~~~LSgGerqRv 185 (449)
++||+|++.+++. ||+||+. +. . ... ..+.+.++.+++.+.. ++++.+|||||||||
T Consensus 101 i~~v~Q~~~l~~~-tv~enl~-~~--~----~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv 168 (290)
T 2bbs_A 101 ISFCSQNSWIMPG-TIKENII-GV--S----YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARI 168 (290)
T ss_dssp EEEECSSCCCCSS-BHHHHHH-TT--C----CCH----HHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHH
T ss_pred EEEEeCCCccCcc-cHHHHhh-Cc--c----cch----HHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHH
Confidence 8999999988885 9999997 32 1 111 1233445555664433 234589999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecCh
Q 044030 186 SISIEILTRPKLLFLDEPTSGLDSAASYYVMSRI-AKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264 (449)
Q Consensus 186 ~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l-~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~ 264 (449)
+|||||+.+|+++||||||+|||+.++..+++.+ ++++ + |+ |||++||++ ..+ ..||++++|++|++++.|++
T Consensus 169 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~-~~--tviivtHd~-~~~-~~~d~i~~l~~G~i~~~g~~ 242 (290)
T 2bbs_A 169 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-A-NK--TRILVTSKM-EHL-KKADKILILHEGSSYFYGTF 242 (290)
T ss_dssp HHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-T-TS--EEEEECCCH-HHH-HHSSEEEEEETTEEEEEECH
T ss_pred HHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-C-CC--EEEEEecCH-HHH-HcCCEEEEEECCeEEEeCCH
Confidence 9999999999999999999999999999999974 5554 3 44 999999996 445 56999999999999999999
Q ss_pred hhHH
Q 044030 265 TAAN 268 (449)
Q Consensus 265 ~~~~ 268 (449)
+++.
T Consensus 243 ~~l~ 246 (290)
T 2bbs_A 243 SELQ 246 (290)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8764
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-43 Score=380.08 Aligned_cols=210 Identities=28% Similarity=0.387 Sum_probs=174.7
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc--
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA-- 113 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~-- 113 (449)
-.++++||++. +. +++.+|+|+||++++||++||+||||||||||+|+|+|+++|+ +|+|.+||.+....
T Consensus 353 ~~i~~~~v~~~-y~----~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~i~~~~~ 424 (598)
T 3qf4_B 353 GEIEFKNVWFS-YD----KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD---RGQILVDGIDIRKIKR 424 (598)
T ss_dssp CCEEEEEEECC-SS----SSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCS---EEEEEETTEEGGGSCH
T ss_pred CeEEEEEEEEE-CC----CCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCC---CeEEEECCEEhhhCCH
Confidence 35999999998 22 3457999999999999999999999999999999999999874 99999999986421
Q ss_pred ---cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCcc-----------CCCCCh
Q 044030 114 ---YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTR-----------IRRLSG 179 (449)
Q Consensus 114 ---~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~-----------~~~LSg 179 (449)
++.++||+|++.+++. ||+||+.++.. ..+. +++.+.++..++.+..+.. ..+|||
T Consensus 425 ~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSg 494 (598)
T 3qf4_B 425 SSLRSSIGIVLQDTILFST-TVKENLKYGNP-----GATD----EEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQ 494 (598)
T ss_dssp HHHHHHEEEECTTCCCCSS-BHHHHHHSSST-----TCCT----THHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCH
T ss_pred HHHHhceEEEeCCCccccc-cHHHHHhcCCC-----CCCH----HHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCH
Confidence 3469999999999875 99999987531 1122 2244455555555444433 378999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEE
Q 044030 180 GQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTV 259 (449)
Q Consensus 180 GerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv 259 (449)
|||||++|||||+.+|++|+||||||+||+.++..+.+.|+++. + | +|+|++||+++ .+ ..||+|++|++|+++
T Consensus 495 Gq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~--~t~i~itH~l~-~~-~~~d~i~~l~~G~i~ 568 (598)
T 3qf4_B 495 GQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-E-G--KTSIIIAHRLN-TI-KNADLIIVLRDGEIV 568 (598)
T ss_dssp HHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-T-T--SEEEEESCCTT-HH-HHCSEEEEECSSSEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-C-C--CEEEEEecCHH-HH-HcCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999986 3 4 49999999985 45 459999999999999
Q ss_pred EecChhhHHH
Q 044030 260 YFGPATAANE 269 (449)
Q Consensus 260 ~~g~~~~~~~ 269 (449)
+.|+++++.+
T Consensus 569 ~~g~~~~l~~ 578 (598)
T 3qf4_B 569 EMGKHDELIQ 578 (598)
T ss_dssp ECSCHHHHHH
T ss_pred EECCHHHHHh
Confidence 9999988753
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-41 Score=389.51 Aligned_cols=214 Identities=28% Similarity=0.442 Sum_probs=178.6
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
-.|+++||+++| +. ..+.++|+||||+|++||.+||+||||||||||+++|.|++.|. +|+|.+||.++..
T Consensus 1075 g~I~f~nVsf~Y-~~--~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~---~G~I~iDG~di~~i~~ 1148 (1321)
T 4f4c_A 1075 GKVIFKNVRFAY-PE--RPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTL---GGEIFIDGSEIKTLNP 1148 (1321)
T ss_dssp CCEEEEEEEECC-TT--SCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCS---SSEEEETTEETTTBCH
T ss_pred CeEEEEEEEEeC-CC--CCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCC---CCEEEECCEEhhhCCH
Confidence 369999999983 21 13457999999999999999999999999999999999999874 8999999998642
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch-------hhCccC----CCCCh
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD-------AMNTRI----RRLSG 179 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~~----~~LSg 179 (449)
.+++++||||++.+|+. |++|||.|+... ...+ ++++.+.++..++.+ -.|+.+ .+|||
T Consensus 1149 ~~lR~~i~~V~Qdp~LF~g-TIreNI~~gld~---~~~s----d~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSg 1220 (1321)
T 4f4c_A 1149 EHTRSQIAIVSQEPTLFDC-SIAENIIYGLDP---SSVT----MAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSG 1220 (1321)
T ss_dssp HHHHTTEEEECSSCCCCSE-EHHHHHSSSSCT---TTSC----HHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCH
T ss_pred HHHHhheEEECCCCEeeCc-cHHHHHhccCCC---CCCC----HHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCH
Confidence 24679999999999987 999999776321 1222 234556666666543 244444 57999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEE
Q 044030 180 GQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTV 259 (449)
Q Consensus 180 GerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv 259 (449)
|||||++|||||+++|+||+||||||+||+.+...|.+.|+++.+ |+|+|+++|.++ ....||+|+||++|+++
T Consensus 1221 GQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~----~~TvI~IAHRLs--Ti~~aD~I~Vld~G~Iv 1294 (1321)
T 4f4c_A 1221 GQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRARE----GRTCIVIAHRLN--TVMNADCIAVVSNGTII 1294 (1321)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSS----SSEEEEECSSSS--TTTTCSEEEEESSSSEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcC----CCEEEEeccCHH--HHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999998753 459999999985 35679999999999999
Q ss_pred EecChhhHHH
Q 044030 260 YFGPATAANE 269 (449)
Q Consensus 260 ~~g~~~~~~~ 269 (449)
++|+++++.+
T Consensus 1295 E~Gth~eLl~ 1304 (1321)
T 4f4c_A 1295 EKGTHTQLMS 1304 (1321)
T ss_dssp EEECHHHHHH
T ss_pred EECCHHHHHh
Confidence 9999998864
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-40 Score=384.88 Aligned_cols=211 Identities=27% Similarity=0.369 Sum_probs=176.5
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
-.|+++||++.| .. ..++++|+|+||+|++|+.+||+||||||||||+++|.|+++| .+|+|.+||.++..
T Consensus 414 g~I~~~nvsF~Y-~~--~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~---~~G~I~idG~~i~~~~~ 487 (1321)
T 4f4c_A 414 GDITVENVHFTY-PS--RPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDV---LKGKITIDGVDVRDINL 487 (1321)
T ss_dssp CCEEEEEEEECC-SS--STTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCC---SEEEEEETTEETTTSCH
T ss_pred CcEEEEEeeeeC-CC--CCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcccccc---ccCcccCCCccchhccH
Confidence 369999999983 21 1356899999999999999999999999999999999999987 49999999998642
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch-----------hhCccCCCCCh
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD-----------AMNTRIRRLSG 179 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----------~~~~~~~~LSg 179 (449)
.++.++||+|++.+|.. |++|||.|+.. ..+. +++.+.++..++.+ .......+|||
T Consensus 488 ~~lr~~i~~v~Q~~~Lf~~-TI~eNI~~g~~-----~~~~----~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSG 557 (1321)
T 4f4c_A 488 EFLRKNVAVVSQEPALFNC-TIEENISLGKE-----GITR----EEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSG 557 (1321)
T ss_dssp HHHHHHEEEECSSCCCCSE-EHHHHHHTTCT-----TCCH----HHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCH
T ss_pred HHHhhcccccCCcceeeCC-chhHHHhhhcc-----cchH----HHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCH
Confidence 13579999999999987 99999988732 1222 33445555544432 23334468999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEE
Q 044030 180 GQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTV 259 (449)
Q Consensus 180 GerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv 259 (449)
|||||++||||++++|+|+|||||||+||+.+...+.+.|.++.+ |+|+|+++|+++ ..+.||+|++|++|+++
T Consensus 558 GQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~----~~T~iiiaHrls--~i~~aD~Iivl~~G~iv 631 (1321)
T 4f4c_A 558 GQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK----GRTTIIIAHRLS--TIRNADLIISCKNGQVV 631 (1321)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHT----TSEEEEECSCTT--TTTTCSEEEEEETTEEE
T ss_pred HHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhC----CCEEEEEcccHH--HHHhCCEEEEeeCCeee
Confidence 999999999999999999999999999999999999999999874 459999999985 46789999999999999
Q ss_pred EecChhhHH
Q 044030 260 YFGPATAAN 268 (449)
Q Consensus 260 ~~g~~~~~~ 268 (449)
+.|+.+++.
T Consensus 632 e~Gth~eL~ 640 (1321)
T 4f4c_A 632 EVGDHRALM 640 (1321)
T ss_dssp EEECHHHHH
T ss_pred ccCCHHHHH
Confidence 999998875
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-40 Score=347.83 Aligned_cols=207 Identities=27% Similarity=0.325 Sum_probs=178.5
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccccc
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAY 114 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~ 114 (449)
...++++|+++.| ++ ..|+++||+|++||++||+||||||||||+|+|+|+++|. +|+|.+.
T Consensus 285 ~~~l~~~~l~~~~------~~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~~-------- 346 (538)
T 1yqt_A 285 ETLVTYPRLVKDY------GS-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEWD-------- 346 (538)
T ss_dssp CEEEEECCEEEEE------TT-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BCCCCCC--------
T ss_pred CeEEEEeeEEEEE------CC-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEEC--------
Confidence 4679999999872 22 3699999999999999999999999999999999999874 8999761
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhC
Q 044030 115 GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTR 194 (449)
Q Consensus 115 ~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~ 194 (449)
..++|++|+....+.+||.|++........ ...+++.++++.+++.+..++++.+|||||||||+||+||+.+
T Consensus 347 ~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~ 419 (538)
T 1yqt_A 347 LTVAYKPQYIKADYEGTVYELLSKIDASKL-------NSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRD 419 (538)
T ss_dssp CCEEEECSSCCCCCSSBHHHHHHHHHHHHH-------TCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSC
T ss_pred ceEEEEecCCcCCCCCcHHHHHHhhhccCC-------CHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhC
Confidence 359999999888788999998865411100 0134578899999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeC--CeEEEecChhhHHH
Q 044030 195 PKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSA--GQTVYFGPATAANE 269 (449)
Q Consensus 195 P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~--G~iv~~g~~~~~~~ 269 (449)
|++|||||||+|||+.++..+++.|++++++.|. |||++|||+ .++..+||++++|++ |+++..|+++++..
T Consensus 420 p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~--tvi~vsHd~-~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 420 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEK--TALVVEHDV-LMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTC--EEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCC--EEEEEeCCH-HHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 9999999999999999999999999999755555 999999996 678999999999986 78888999987654
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=350.16 Aligned_cols=207 Identities=25% Similarity=0.312 Sum_probs=179.3
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccccc
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAY 114 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~ 114 (449)
...++++|+++. + ++ ..|+++||++++||++||+||||||||||||+|+|+++|. +|+|.+.
T Consensus 355 ~~~l~~~~l~~~-~-----~~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~-------- 416 (607)
T 3bk7_A 355 ETLVEYPRLVKD-Y-----GS-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEWD-------- 416 (607)
T ss_dssp CEEEEECCEEEE-C-----SS-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BSCCCCC--------
T ss_pred ceEEEEeceEEE-e-----cc-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEEe--------
Confidence 467999999987 2 23 3799999999999999999999999999999999999874 8998761
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhC
Q 044030 115 GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTR 194 (449)
Q Consensus 115 ~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~ 194 (449)
..++|+||+....+.+||.|++....... ....+++.++++.+|+.+.+++++.+|||||||||+||+||+.+
T Consensus 417 ~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~ 489 (607)
T 3bk7_A 417 LTVAYKPQYIKAEYEGTVYELLSKIDSSK-------LNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRD 489 (607)
T ss_dssp CCEEEECSSCCCCCSSBHHHHHHHHHHHH-------HHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSC
T ss_pred eEEEEEecCccCCCCCcHHHHHHhhhccC-------CCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhC
Confidence 35999999988888899999887641110 01135678899999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeC--CeEEEecChhhHHH
Q 044030 195 PKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSA--GQTVYFGPATAANE 269 (449)
Q Consensus 195 P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~--G~iv~~g~~~~~~~ 269 (449)
|++|||||||+|||+.++..+++.|++++++.|. |||++|||+ .++..+||++++|++ |+++..|+++++..
T Consensus 490 p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~--tvi~vsHd~-~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 490 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEK--TALVVEHDV-LMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTC--EEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCC--EEEEEeCCH-HHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 9999999999999999999999999999865555 999999996 578899999999986 88888999987654
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-40 Score=380.86 Aligned_cols=216 Identities=26% Similarity=0.370 Sum_probs=175.0
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
-.|+++||+++| .. ..+.++|+||||++++||++||+||||||||||+++|+|+++|. +|+|.++|.++..
T Consensus 386 g~i~~~~v~~~y-~~--~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~---~G~i~i~g~~i~~~~~ 459 (1284)
T 3g5u_A 386 GNLEFKNIHFSY-PS--RKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL---DGMVSIDGQDIRTINV 459 (1284)
T ss_dssp CCEEEEEEEECC-SS--TTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCS---EEEEEETTEEGGGSCH
T ss_pred CeEEEEEEEEEc-CC--CCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEHHhCCH
Confidence 358999999983 21 12357999999999999999999999999999999999999874 9999999998642
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHH-----HHHHHHHc--CCchhhCccCCCCChHHHH
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKER-----AEVTIREM--GLQDAMNTRIRRLSGGQKR 183 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~-----v~~~l~~l--gL~~~~~~~~~~LSgGerq 183 (449)
.++.+|||+|++.+++. ||+||+.++.. ..+.++..+. +.+.++.+ |++...+..+.+|||||||
T Consensus 460 ~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~-----~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~Q 533 (1284)
T 3g5u_A 460 RYLREIIGVVSQEPVLFAT-TIAENIRYGRE-----DVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQ 533 (1284)
T ss_dssp HHHHHHEEEECSSCCCCSS-CHHHHHHHHCS-----SCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHH
T ss_pred HHHHhheEEEcCCCccCCc-cHHHHHhcCCC-----CCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHH
Confidence 13469999999999987 99999998742 1222222221 12333433 3333445566799999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 184 Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
|++|||||+.+|+|||||||||+||+.+...+.+.|+.+. + | +|+|+++|++ +.+ ..||+|++|++|++++.|+
T Consensus 534 riaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~--~t~i~itH~l-~~i-~~~d~i~vl~~G~i~~~g~ 607 (1284)
T 3g5u_A 534 RIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-E-G--RTTIVIAHRL-STV-RNADVIAGFDGGVIVEQGN 607 (1284)
T ss_dssp HHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-T-T--SEEEEECSCH-HHH-TTCSEEEECSSSCCCCEEC
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-C-C--CEEEEEecCH-HHH-HcCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999875 3 4 4999999996 455 5599999999999999999
Q ss_pred hhhHHH
Q 044030 264 ATAANE 269 (449)
Q Consensus 264 ~~~~~~ 269 (449)
++++.+
T Consensus 608 ~~~l~~ 613 (1284)
T 3g5u_A 608 HDELMR 613 (1284)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988753
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-39 Score=343.90 Aligned_cols=207 Identities=20% Similarity=0.288 Sum_probs=176.5
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccccc
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAY 114 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~ 114 (449)
...++++|+++.| ++ ..|+++|+++++||++||+||||||||||+|+|+|+++|. +|+|.+++.
T Consensus 267 ~~~l~~~~l~~~~------~~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~~~------ 330 (538)
T 3ozx_A 267 KTKMKWTKIIKKL------GD-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEKQ------ 330 (538)
T ss_dssp CEEEEECCEEEEE------TT-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---BCCEESSCC------
T ss_pred cceEEEcceEEEE------CC-EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCe------
Confidence 4578999999872 22 4688889999999999999999999999999999999874 899997653
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhC
Q 044030 115 GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTR 194 (449)
Q Consensus 115 ~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~ 194 (449)
.++|++|+......+||.|++.+..... ... ....++++++.+++.+..++++.+|||||||||+||+||+.+
T Consensus 331 -~i~~~~q~~~~~~~~tv~~~l~~~~~~~----~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~ 403 (538)
T 3ozx_A 331 -ILSYKPQRIFPNYDGTVQQYLENASKDA----LST--SSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKE 403 (538)
T ss_dssp -CEEEECSSCCCCCSSBHHHHHHHHCSST----TCT--TSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSC
T ss_pred -eeEeechhcccccCCCHHHHHHHhhhhc----cch--hHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 5899999987777889999998742211 111 123577889999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeC--CeEEEecChhhH
Q 044030 195 PKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSA--GQTVYFGPATAA 267 (449)
Q Consensus 195 P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~--G~iv~~g~~~~~ 267 (449)
|++|||||||+|||+.++..+++.|++++++.|. |||++|||+ .++..+||+|++|++ |.....+++..+
T Consensus 404 p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~--tvi~vsHdl-~~~~~~aDri~vl~~~~~~~~~~~~~~~~ 475 (538)
T 3ozx_A 404 ADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKA--VTFIIDHDL-SIHDYIADRIIVFKGEPEKAGLATSPVTL 475 (538)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTC--EEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEH
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCC--EEEEEeCCH-HHHHHhCCEEEEEeCCcceeccCCChHHH
Confidence 9999999999999999999999999999866655 999999996 588999999999986 566666766544
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-39 Score=374.98 Aligned_cols=214 Identities=24% Similarity=0.376 Sum_probs=172.7
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
-.++++||++.| . + ..+.++|+|+||+|++||++||+||||||||||+++|+|+++|. +|+|.+||.++..
T Consensus 1029 g~i~~~~v~~~y-~-~-~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~---~G~I~i~g~~i~~~~~ 1102 (1284)
T 3g5u_A 1029 GNVQFSGVVFNY-P-T-RPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPM---AGSVFLDGKEIKQLNV 1102 (1284)
T ss_dssp CCEEEEEEEBCC-S-C-GGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCS---EEEEESSSSCTTSSCH
T ss_pred CcEEEEEEEEEC-C-C-CCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEcccCCH
Confidence 358999999983 2 1 12346999999999999999999999999999999999999874 9999999987642
Q ss_pred --ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchh-------hCc----cCCCCCh
Q 044030 113 --AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDA-------MNT----RIRRLSG 179 (449)
Q Consensus 113 --~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~----~~~~LSg 179 (449)
.++.++||||++.+++ .||+||+.++.... ..+.+ .+.+.++..++.+. .|+ ...+|||
T Consensus 1103 ~~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~~---~~~~~----~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSg 1174 (1284)
T 3g5u_A 1103 QWLRAQLGIVSQEPILFD-CSIAENIAYGDNSR---VVSYE----EIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSG 1174 (1284)
T ss_dssp HHHTTSCEEEESSCCCCS-SBHHHHHTCCCSSC---CCCHH----HHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCH
T ss_pred HHHHhceEEECCCCcccc-ccHHHHHhccCCCC---CCCHH----HHHHHHHHhCcHHHHHhCccccccccCCCCCccCH
Confidence 1357999999998876 59999997753211 12222 23344444444333 233 3468999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEE
Q 044030 180 GQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTV 259 (449)
Q Consensus 180 GerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv 259 (449)
||||||+|||||+.+|+||+|||||+|||+.+...+.+.|+++. + | +|||++||++. .+ ..||+|++|++|+++
T Consensus 1175 Gq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~-~-~--~tvi~isH~l~-~i-~~~dri~vl~~G~i~ 1248 (1284)
T 3g5u_A 1175 GQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR-E-G--RTCIVIAHRLS-TI-QNADLIVVIQNGKVK 1248 (1284)
T ss_dssp HHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS-S-S--SCEEEECSCTT-GG-GSCSEEEEEETBEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC-C-C--CEEEEEecCHH-HH-HcCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999998864 3 4 49999999985 55 569999999999999
Q ss_pred EecChhhHHH
Q 044030 260 YFGPATAANE 269 (449)
Q Consensus 260 ~~g~~~~~~~ 269 (449)
+.|+++++.+
T Consensus 1249 ~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1249 EHGTHQQLLA 1258 (1284)
T ss_dssp EEECHHHHHH
T ss_pred EECCHHHHHh
Confidence 9999988753
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=335.16 Aligned_cols=203 Identities=19% Similarity=0.240 Sum_probs=169.4
Q ss_pred EeeEEEEeecCcccccceeeeeeEEEecC-----eEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccC
Q 044030 41 KDLTVTIVSNGKKGSSSILEDLTGYAKPG-----HLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYG 115 (449)
Q Consensus 41 ~nls~~~~~~~~~~~~~iL~~vs~~i~~G-----e~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~ 115 (449)
+++++.| . +...+++|+||++.+| |+++|+||||||||||+++|+|+++|+ +|+. . ...
T Consensus 350 ~~~~~~y-~----~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~---~G~~------~--~~~ 413 (608)
T 3j16_B 350 ASRAFSY-P----SLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---EGQD------I--PKL 413 (608)
T ss_dssp SSSCCEE-C----CEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS---BCCC------C--CSC
T ss_pred cceeEEe-c----CcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC---CCcC------c--cCC
Confidence 4555552 1 2345899999999999 789999999999999999999999874 7752 1 124
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCC
Q 044030 116 TSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRP 195 (449)
Q Consensus 116 ~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P 195 (449)
.++|++|+.......||+|++.... +. ... ....++++++.++|.+.+++++.+|||||||||+||+||+.+|
T Consensus 414 ~i~~~~q~~~~~~~~tv~e~~~~~~--~~--~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p 486 (608)
T 3j16_B 414 NVSMKPQKIAPKFPGTVRQLFFKKI--RG--QFL---NPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPA 486 (608)
T ss_dssp CEEEECSSCCCCCCSBHHHHHHHHC--SS--TTT---SHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCC
T ss_pred cEEEecccccccCCccHHHHHHHHh--hc--ccc---cHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence 6899999977766779999875432 11 111 1245678899999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeC--CeEEEecChhhHHH
Q 044030 196 KLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSA--GQTVYFGPATAANE 269 (449)
Q Consensus 196 ~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~--G~iv~~g~~~~~~~ 269 (449)
++|||||||+|||+.++..+++.|++++++.|. |||++|||+ .++..+||++++|++ |+++..|+|+++..
T Consensus 487 ~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~--tviivtHdl-~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 487 DIYLIDEPSAYLDSEQRIICSKVIRRFILHNKK--TAFIVEHDF-IMATYLADKVIVFEGIPSKNAHARAPESLLT 559 (608)
T ss_dssp SEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTC--EEEEECSCH-HHHHHHCSEEEECEEETTTEEECCCCEEHHH
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCC--EEEEEeCCH-HHHHHhCCEEEEEeCCCCeEEecCChHHHhh
Confidence 999999999999999999999999999755555 999999996 688999999999996 89999999987754
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-36 Score=335.60 Aligned_cols=201 Identities=24% Similarity=0.342 Sum_probs=167.9
Q ss_pred CCeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc
Q 044030 34 DGVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA 113 (449)
Q Consensus 34 ~~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~ 113 (449)
....|...|+++.| +++.+|+|+||++++|++++|+||||||||||||+|+| |+| +|.+...
T Consensus 432 ~~~~L~~~~ls~~y------g~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~- 493 (986)
T 2iw3_A 432 EGEDLCNCEFSLAY------GAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQE- 493 (986)
T ss_dssp SSCEEEEEEEEEEE------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTT-
T ss_pred ccceeEEeeEEEEE------CCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC---------CCc--CCCcccc-
Confidence 34567777899883 45689999999999999999999999999999999995 222 3433211
Q ss_pred cCcEEEEcCCC-CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccCCCCChHHHHHHHHHHHH
Q 044030 114 YGTSAYVTQDD-TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSGGQKRRVSISIEI 191 (449)
Q Consensus 114 ~~~i~yv~Q~~-~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSgGerqRv~ia~aL 191 (449)
...++|++|+. .+++.+||.|++.+ ... +. ++++.++++.+|+. +..++++.+|||||||||+||+||
T Consensus 494 ~~~~~~v~q~~~~~~~~ltv~e~l~~--~~~---~~-----~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL 563 (986)
T 2iw3_A 494 ECRTVYVEHDIDGTHSDTSVLDFVFE--SGV---GT-----KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAV 563 (986)
T ss_dssp TSCEEETTCCCCCCCTTSBHHHHHHT--TCS---SC-----HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHH
T ss_pred ceeEEEEcccccccccCCcHHHHHHH--hhc---CH-----HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHH
Confidence 12478999985 67889999999975 111 11 45688999999994 788999999999999999999999
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEE-EecChhhHHH
Q 044030 192 LTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTV-YFGPATAANE 269 (449)
Q Consensus 192 ~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv-~~g~~~~~~~ 269 (449)
+.+|++|||||||+|||+.++..+.+.|++ .|. |||++|||+ .++..+||++++|++|+++ +.|+++++..
T Consensus 564 ~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~g~--tvIivSHdl-~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 564 LRNADILLLDEPTNHLDTVNVAWLVNYLNT----CGI--TSITISHDS-VFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp HTTCSEEEEESTTTTCCHHHHHHHHHHHHH----SCS--EEEEECSCH-HHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred hcCCCEEEEECCccCCCHHHHHHHHHHHHh----CCC--EEEEEECCH-HHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 999999999999999999999999999987 244 999999995 6788999999999999997 6899887653
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-37 Score=335.59 Aligned_cols=221 Identities=22% Similarity=0.291 Sum_probs=143.5
Q ss_pred EEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHH---------------------HHHHcCCCCCC
Q 044030 39 TWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLL---------------------DALAGRLGSDT 97 (449)
Q Consensus 39 ~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL---------------------~~l~G~~~~~~ 97 (449)
.-+++++.++. ...+.+|+||||+|++||++||+||||||||||+ ++++|+..|+.
T Consensus 17 ~~~~~~~~~~~---~~~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~ 93 (670)
T 3ux8_A 17 RGSHMDKIIVK---GARAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDV 93 (670)
T ss_dssp -----CEEEEE---EECSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCC
T ss_pred CCCCcceEEEc---CCCccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCc
Confidence 44555544222 1245799999999999999999999999999998 88888876641
Q ss_pred C----ceeEEEECCEeccc-ccCcEEEEcCCCC-------------------CCCCCCHHHHHHHHHhccCCCCCCHHHH
Q 044030 98 R----QTGKILINGHKKAL-AYGTSAYVTQDDT-------------------LITTLTVKEAVYYSAQLQLPDTMPKSDK 153 (449)
Q Consensus 98 ~----~~G~I~~~g~~~~~-~~~~i~yv~Q~~~-------------------l~~~lTv~e~l~~~~~~~~~~~~~~~~~ 153 (449)
. ..|.|.++|.+... ..+.++||+|... .++.+||.||+.+......... .....
T Consensus 94 ~~i~~~~~~i~~~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~-~~~~~ 172 (670)
T 3ux8_A 94 DAIEGLSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEK-EAQIA 172 (670)
T ss_dssp SEEESCCCEEEESSCC-----CCBHHHHTTCC-------------------------CC---------------------
T ss_pred cceeccccceEecCchhhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchh-hhHHH
Confidence 1 14567777754321 1234555555433 2467899999987533221100 00000
Q ss_pred H------HHHHHHHHHcCCchh-hCccCCCCChHHHHHHHHHHHHHhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 044030 154 K------ERAEVTIREMGLQDA-MNTRIRRLSGGQKRRVSISIEILTRPK--LLFLDEPTSGLDSAASYYVMSRIAKLGQ 224 (449)
Q Consensus 154 ~------~~v~~~l~~lgL~~~-~~~~~~~LSgGerqRv~ia~aL~~~P~--llllDEPtsgLD~~~~~~i~~~l~~l~~ 224 (449)
+ .....+++.+||.+. +++++.+|||||||||+|||||+.+|+ +|||||||+|||+.++..+++.|+++++
T Consensus 173 ~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~ 252 (670)
T 3ux8_A 173 RLILREIRDRLGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRD 252 (670)
T ss_dssp ------CHHHHHHHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHH
Confidence 0 111245888999865 799999999999999999999999998 9999999999999999999999999985
Q ss_pred hcCCCeEEEEEecCCcHHHHhhcCeEEEe------eCCeEEEecChhhHH
Q 044030 225 RDGIGRTIIASIHQPSSEVFQLFHNLCLL------SAGQTVYFGPATAAN 268 (449)
Q Consensus 225 ~~g~g~tii~~tH~~~~~i~~~~D~v~~l------~~G~iv~~g~~~~~~ 268 (449)
.|. |||++|||+ .. ...||++++| ++|++++.|+++++.
T Consensus 253 -~g~--tvi~vtHd~-~~-~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 253 -LGN--TLIVVEHDE-DT-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp -TTC--EEEEECCCH-HH-HHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred -cCC--EEEEEeCCH-HH-HhhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 455 999999996 34 4569999999 899999999998764
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-37 Score=332.51 Aligned_cols=191 Identities=25% Similarity=0.353 Sum_probs=157.6
Q ss_pred EeeEEEEeecCccccc-ceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEE---------EECCEec
Q 044030 41 KDLTVTIVSNGKKGSS-SILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKI---------LINGHKK 110 (449)
Q Consensus 41 ~nls~~~~~~~~~~~~-~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I---------~~~g~~~ 110 (449)
+||++.| +++ .+|+|+| ++++||+++|+||||||||||||+|+|+++|+ +|++ .++|.+.
T Consensus 95 ~~ls~~y------g~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~---~G~~~~~~~~~~~~~~G~~~ 164 (607)
T 3bk7_A 95 EDCVHRY------GVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPN---LCEDNDSWDNVIRAFRGNEL 164 (607)
T ss_dssp GSEEEEC------STTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCC---TTTTCCCHHHHHHHTTTSTH
T ss_pred CCeEEEE------CCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCC---CCccccccchhhheeCCEeh
Confidence 7888872 333 4999999 99999999999999999999999999999874 7875 4566542
Q ss_pred cc-------ccCcEEEEcCCCCCCC---CCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChH
Q 044030 111 AL-------AYGTSAYVTQDDTLIT---TLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGG 180 (449)
Q Consensus 111 ~~-------~~~~i~yv~Q~~~l~~---~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgG 180 (449)
.. ....+++++|....++ ..||.|++... .. .++++++++.+||.+.+++++.+||||
T Consensus 165 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~-------~~-----~~~~~~~L~~lgL~~~~~~~~~~LSGG 232 (607)
T 3bk7_A 165 QNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV-------DE-----VGKFEEVVKELELENVLDRELHQLSGG 232 (607)
T ss_dssp HHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT-------CC-----SSCHHHHHHHTTCTTGGGSBGGGCCHH
T ss_pred hhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhh-------HH-----HHHHHHHHHHcCCCchhCCChhhCCHH
Confidence 11 1235789998754322 23999998531 00 134778999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCe
Q 044030 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQ 257 (449)
Q Consensus 181 erqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~ 257 (449)
|||||+||+||+.+|++|||||||+|||+.++..+++.|++++++ |. |||++|||+ ..+..+||+|++|+++.
T Consensus 233 ekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~-g~--tvIivsHdl-~~~~~~adri~vl~~~~ 305 (607)
T 3bk7_A 233 ELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANE-GK--AVLVVEHDL-AVLDYLSDVIHVVYGEP 305 (607)
T ss_dssp HHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHT-TC--EEEEECSCH-HHHHHHCSEEEEEESCT
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhc-CC--EEEEEecCh-HHHHhhCCEEEEECCCc
Confidence 999999999999999999999999999999999999999999854 55 999999996 57888999999998653
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-37 Score=328.72 Aligned_cols=194 Identities=24% Similarity=0.336 Sum_probs=157.9
Q ss_pred EEE-EeeEEEEeecCccccc-ceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEE---------EEC
Q 044030 38 LTW-KDLTVTIVSNGKKGSS-SILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKI---------LIN 106 (449)
Q Consensus 38 l~~-~nls~~~~~~~~~~~~-~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I---------~~~ 106 (449)
.++ +||++.| +++ .+|+||| +|++||++||+||||||||||||+|+|+++|+ +|++ .++
T Consensus 21 ~~~~~~ls~~y------g~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~---~G~~~~~~~~~~~~~~ 90 (538)
T 1yqt_A 21 EQLEEDCVHRY------GVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPN---LCGDNDSWDGVIRAFR 90 (538)
T ss_dssp ---CCCEEEEC------STTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC---TTTTCCSHHHHHHHTT
T ss_pred hhHhcCcEEEE------CCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCccCcchhhhHHhhC
Confidence 355 5898882 333 5899999 99999999999999999999999999999874 6775 356
Q ss_pred CEeccc-------ccCcEEEEcCCCCCCCC---CCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCC
Q 044030 107 GHKKAL-------AYGTSAYVTQDDTLITT---LTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRR 176 (449)
Q Consensus 107 g~~~~~-------~~~~i~yv~Q~~~l~~~---lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~ 176 (449)
|.+... ....+++++|....++. .|+.|++.... ..++++++++.+||.+..++++.+
T Consensus 91 g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~------------~~~~~~~~l~~lgl~~~~~~~~~~ 158 (538)
T 1yqt_A 91 GNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD------------ETGKLEEVVKALELENVLEREIQH 158 (538)
T ss_dssp TSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC------------SSSCHHHHHHHTTCTTTTTSBGGG
T ss_pred CccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh------------HHHHHHHHHHHcCCChhhhCChhh
Confidence 654210 12357899997544332 38998875311 013477899999999999999999
Q ss_pred CChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCC
Q 044030 177 LSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAG 256 (449)
Q Consensus 177 LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G 256 (449)
|||||||||+||+||+.+|++|||||||++||+.++..+++.|+++++ .|. |||++|||+ .++..+||+|++|++|
T Consensus 159 LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~--tvi~vsHd~-~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 159 LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE-EGK--SVLVVEHDL-AVLDYLSDIIHVVYGE 234 (538)
T ss_dssp CCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTC--EEEEECSCH-HHHHHHCSEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCC--EEEEEeCCH-HHHHHhCCEEEEEcCc
Confidence 999999999999999999999999999999999999999999999985 455 999999995 5888999999999865
Q ss_pred e
Q 044030 257 Q 257 (449)
Q Consensus 257 ~ 257 (449)
.
T Consensus 235 ~ 235 (538)
T 1yqt_A 235 P 235 (538)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-36 Score=335.93 Aligned_cols=209 Identities=23% Similarity=0.342 Sum_probs=165.0
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccccc
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAY 114 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~ 114 (449)
...|+++|+++. +. .+.+.+|+|+||++++||+++|+||||||||||+|+|+|+++|. +|+|+++|.
T Consensus 669 ~~mL~v~nLs~~-Y~---g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~---sG~I~~~~~------ 735 (986)
T 2iw3_A 669 KAIVKVTNMEFQ-YP---GTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPT---SGEVYTHEN------ 735 (986)
T ss_dssp SEEEEEEEEEEC-CT---TCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCS---EEEEEECTT------
T ss_pred CceEEEEeeEEE-eC---CCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEEcCc------
Confidence 356999999997 21 11367999999999999999999999999999999999999874 899999863
Q ss_pred CcEEEEcCCCCC----CCCCCHHHHHHHHHhcc------------CC---------------------------------
Q 044030 115 GTSAYVTQDDTL----ITTLTVKEAVYYSAQLQ------------LP--------------------------------- 145 (449)
Q Consensus 115 ~~i~yv~Q~~~l----~~~lTv~e~l~~~~~~~------------~~--------------------------------- 145 (449)
..++|++|+... ....|+.+++.+..... ..
T Consensus 736 ~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~ 815 (986)
T 2iw3_A 736 CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTY 815 (986)
T ss_dssp CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEE
T ss_pred cceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccc
Confidence 248999997521 23458888876532100 00
Q ss_pred -------------------CCC--------C--------------------------HHHHHHHHHHHHHHcCCch-h-h
Q 044030 146 -------------------DTM--------P--------------------------KSDKKERAEVTIREMGLQD-A-M 170 (449)
Q Consensus 146 -------------------~~~--------~--------------------------~~~~~~~v~~~l~~lgL~~-~-~ 170 (449)
... + ....+++++++++.+||.. . .
T Consensus 816 ~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~ 895 (986)
T 2iw3_A 816 EYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVS 895 (986)
T ss_dssp EEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHH
T ss_pred hhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhc
Confidence 000 0 0001346788999999975 4 6
Q ss_pred CccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeE
Q 044030 171 NTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNL 250 (449)
Q Consensus 171 ~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v 250 (449)
++++++|||||||||+||+||+.+|++|||||||+|||+.+...+++.|+++ +. |||++|||+ +.+..+||++
T Consensus 896 ~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~----g~--tVIiISHD~-e~v~~l~DrV 968 (986)
T 2iw3_A 896 HSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF----EG--GVIIITHSA-EFTKNLTEEV 968 (986)
T ss_dssp HSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC----SS--EEEEECSCH-HHHTTTCCEE
T ss_pred CCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh----CC--EEEEEECCH-HHHHHhCCEE
Confidence 8899999999999999999999999999999999999999999999888654 33 999999995 5788899999
Q ss_pred EEeeCCeEEEecC
Q 044030 251 CLLSAGQTVYFGP 263 (449)
Q Consensus 251 ~~l~~G~iv~~g~ 263 (449)
++|++|+++..|+
T Consensus 969 ivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 969 WAVKDGRMTPSGH 981 (986)
T ss_dssp ECCBTTBCCC---
T ss_pred EEEECCEEEEeCC
Confidence 9999999987774
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-35 Score=321.19 Aligned_cols=195 Identities=25% Similarity=0.346 Sum_probs=149.9
Q ss_pred cceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHH----------------------cCCCCCCCceeEEEECCEecccc
Q 044030 56 SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALA----------------------GRLGSDTRQTGKILINGHKKALA 113 (449)
Q Consensus 56 ~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~----------------------G~~~~~~~~~G~I~~~g~~~~~~ 113 (449)
..+|+||||+|++||++||+||||||||||+++|+ |+.. ..|.|.++|.+....
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~----~~~~i~~~~~~~~~~ 410 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEH----LDKVIDIDQSPIGRT 410 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGG----CSEEEECCSSCSCSS
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccc----cCceeEeccccCCCC
Confidence 46899999999999999999999999999998764 2222 246777777643210
Q ss_pred ----------------------------------------------cCcEEEEcCCCCCCC-------------------
Q 044030 114 ----------------------------------------------YGTSAYVTQDDTLIT------------------- 128 (449)
Q Consensus 114 ----------------------------------------------~~~i~yv~Q~~~l~~------------------- 128 (449)
....|+++|+..+++
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (670)
T 3ux8_A 411 PRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETL 490 (670)
T ss_dssp TTCCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHH
T ss_pred CCcchhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhh
Confidence 011234444433322
Q ss_pred -------------CCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch-hhCccCCCCChHHHHHHHHHHHHHhC
Q 044030 129 -------------TLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD-AMNTRIRRLSGGQKRRVSISIEILTR 194 (449)
Q Consensus 129 -------------~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LSgGerqRv~ia~aL~~~ 194 (449)
.+||.||+.|.... ...+++.+.++.+|+.. .+++++.+|||||||||+|||||+.+
T Consensus 491 ~~~~~~~~~~~~~~ltv~e~l~~~~~~---------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~ 561 (670)
T 3ux8_A 491 EVTYKGKNIAEVLDMTVEDALDFFASI---------PKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRR 561 (670)
T ss_dssp TCCBTTBCHHHHHTSBHHHHHHHTTTC---------HHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSC
T ss_pred heeecCCCHHHHhhCCHHHHHHHHHHh---------hhHHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhC
Confidence 47999999875321 12244567888999964 56899999999999999999999998
Q ss_pred C---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEe------eCCeEEEecChh
Q 044030 195 P---KLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLL------SAGQTVYFGPAT 265 (449)
Q Consensus 195 P---~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l------~~G~iv~~g~~~ 265 (449)
| ++|||||||+|||+.++..+++.|++++++ |. |||++|||+ .. ...||+|++| ++|++++.|+++
T Consensus 562 p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~-g~--tvi~vtHd~-~~-~~~~d~i~~l~~~~g~~~G~i~~~g~~~ 636 (670)
T 3ux8_A 562 SNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN-GD--TVLVIEHNL-DV-IKTADYIIDLGPEGGDRGGQIVAVGTPE 636 (670)
T ss_dssp CCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TC--EEEEECCCH-HH-HTTCSEEEEEESSSGGGCCEEEEEECHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CC--EEEEEeCCH-HH-HHhCCEEEEecCCcCCCCCEEEEecCHH
Confidence 7 499999999999999999999999999854 55 999999996 34 4679999999 899999999998
Q ss_pred hHH
Q 044030 266 AAN 268 (449)
Q Consensus 266 ~~~ 268 (449)
++.
T Consensus 637 ~~~ 639 (670)
T 3ux8_A 637 EVA 639 (670)
T ss_dssp HHH
T ss_pred HHH
Confidence 774
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-34 Score=305.79 Aligned_cols=187 Identities=25% Similarity=0.348 Sum_probs=145.6
Q ss_pred cceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEE-----------EECCEeccc-----ccC--cE
Q 044030 56 SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKI-----------LINGHKKAL-----AYG--TS 117 (449)
Q Consensus 56 ~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I-----------~~~g~~~~~-----~~~--~i 117 (449)
...|++++ .+++||++||+||||||||||||+|+|+++|+ +|+| .+.|..... ... ..
T Consensus 91 ~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~---~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 166 (608)
T 3j16_B 91 SFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPN---LGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKA 166 (608)
T ss_dssp SCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC---TTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCC
T ss_pred ceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCC---CceEecccchhhhhheecChhhhhhhhHHHHHhhhh
Confidence 34677777 68999999999999999999999999999875 7887 233332110 001 12
Q ss_pred EEEcCCCCCC------CCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHH
Q 044030 118 AYVTQDDTLI------TTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEI 191 (449)
Q Consensus 118 ~yv~Q~~~l~------~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL 191 (449)
.+.+|..... +..++.+++.... ....++++++++.+||.+..++++.+|||||||||+||+||
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~v~~~l~~~~----------~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL 236 (608)
T 3j16_B 167 IIKPQYVDNIPRAIKGPVQKVGELLKLRM----------EKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSC 236 (608)
T ss_dssp EEECCCTTTHHHHCSSSSSHHHHHHHHHC----------CSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHH
T ss_pred hhchhhhhhhhhhhcchhhHHHHHHhhhh----------hhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHH
Confidence 3344432211 2235555553321 01235688999999999999999999999999999999999
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 192 LTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 192 ~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
+.+|++|||||||+|||+.++..+.+.|++++++ |. |||++||++ .++..+||++++|++|..++
T Consensus 237 ~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~-g~--tvi~vtHdl-~~~~~~~drv~vl~~~~~~~ 301 (608)
T 3j16_B 237 VQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAP-TK--YVICVEHDL-SVLDYLSDFVCIIYGVPSVY 301 (608)
T ss_dssp HSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTT-TC--EEEEECSCH-HHHHHHCSEEEEEESCTTTE
T ss_pred HhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhC-CC--EEEEEeCCH-HHHHHhCCEEEEEeCCcccc
Confidence 9999999999999999999999999999999854 54 999999996 68999999999999876554
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-34 Score=301.51 Aligned_cols=181 Identities=20% Similarity=0.219 Sum_probs=143.3
Q ss_pred eeeeeEE-EecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEE-----------EECCEeccc-------ccCcEEE
Q 044030 59 LEDLTGY-AKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKI-----------LINGHKKAL-------AYGTSAY 119 (449)
Q Consensus 59 L~~vs~~-i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I-----------~~~g~~~~~-------~~~~i~y 119 (449)
++-..+. .++||++||+||||||||||+|+|+|+++|+ +|+| .++|.+... ....+..
T Consensus 14 f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~---~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~ 90 (538)
T 3ozx_A 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPN---FGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVH 90 (538)
T ss_dssp CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCC---TTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEE
T ss_pred eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhh
Confidence 4444453 4599999999999999999999999999875 7988 566754311 1123444
Q ss_pred EcCCCCCC---CCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCC
Q 044030 120 VTQDDTLI---TTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPK 196 (449)
Q Consensus 120 v~Q~~~l~---~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~ 196 (449)
..|..... ...|+.+++.... .+++++++++.+|+.+..++++.+|||||||||+||+||+.+|+
T Consensus 91 ~~~~~~~~~~~~~~~v~~~l~~~~------------~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~ 158 (538)
T 3ozx_A 91 KIQYVEYASKFLKGTVNEILTKID------------ERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREAD 158 (538)
T ss_dssp ECSCTTGGGTTCCSBHHHHHHHHC------------CSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCS
T ss_pred ccchhhhhhhhccCcHHHHhhcch------------hHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 55543222 2237887653210 11246788999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEE
Q 044030 197 LLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTV 259 (449)
Q Consensus 197 llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv 259 (449)
+|||||||++||+.++..+.+.|++++ + |. |||++||++ .++..+||+|++|++|...
T Consensus 159 illlDEPts~LD~~~~~~l~~~l~~l~-~-g~--tii~vsHdl-~~~~~~~d~i~vl~~~~~~ 216 (538)
T 3ozx_A 159 VYIFDQPSSYLDVRERMNMAKAIRELL-K-NK--YVIVVDHDL-IVLDYLTDLIHIIYGESSV 216 (538)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHC-T-TS--EEEEECSCH-HHHHHHCSEEEEEEEETTT
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHh-C-CC--EEEEEEeCh-HHHHhhCCEEEEecCCccc
Confidence 999999999999999999999999996 4 55 999999996 6899999999999876543
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.98 E-value=1e-32 Score=305.30 Aligned_cols=208 Identities=24% Similarity=0.328 Sum_probs=159.5
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHH-cCC---------CCCC--Ccee--
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALA-GRL---------GSDT--RQTG-- 101 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~-G~~---------~~~~--~~~G-- 101 (449)
..|+++|++. ..|+|||++|++||++||+|+||||||||+++|+ |.+ .++. ...|
T Consensus 628 ~~L~v~~l~~-----------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~ 696 (972)
T 2r6f_A 628 RWLEVVGARE-----------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLE 696 (972)
T ss_dssp CEEEEEEECS-----------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGG
T ss_pred eEEEEecCcc-----------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeecccc
Confidence 4577777642 2699999999999999999999999999999864 211 1211 0123
Q ss_pred ----EEEECCEecccc------------------------cCcEEEEcCCCCCC----------------------C---
Q 044030 102 ----KILINGHKKALA------------------------YGTSAYVTQDDTLI----------------------T--- 128 (449)
Q Consensus 102 ----~I~~~g~~~~~~------------------------~~~i~yv~Q~~~l~----------------------~--- 128 (449)
.|.++|.++... .+..||++|...+. +
T Consensus 697 ~~~~~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~ 776 (972)
T 2r6f_A 697 HLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVY 776 (972)
T ss_dssp GCSEEEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEE
T ss_pred ccceEEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccc
Confidence 478887664210 02246777653321 1
Q ss_pred -----------------------------CCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch-hhCccCCCCC
Q 044030 129 -----------------------------TLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD-AMNTRIRRLS 178 (449)
Q Consensus 129 -----------------------------~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LS 178 (449)
.+||.|++.|... . .. ..++.++++.+||.. ..++++.+||
T Consensus 777 ~~ce~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~------~-~~--~~~~~~~L~~~gL~~~~l~~~~~~LS 847 (972)
T 2r6f_A 777 VPCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFAS------I-PK--IKRKLETLYDVGLGYMKLGQPATTLS 847 (972)
T ss_dssp EECTTTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCS------C-HH--HHHHHHHHHHTTCSSSBTTCCGGGCC
T ss_pred ccccccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhc------c-hh--HHHHHHHHHHcCCCcccccCchhhCC
Confidence 4678888876421 1 11 234568899999987 7899999999
Q ss_pred hHHHHHHHHHHHHHhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEe--
Q 044030 179 GGQKRRVSISIEILTRP---KLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLL-- 253 (449)
Q Consensus 179 gGerqRv~ia~aL~~~P---~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l-- 253 (449)
|||||||+||++|+.+| ++|||||||+|||+.++..+++.|+++++ .|. |||++||++ +.+ ..||+|++|
T Consensus 848 GGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~--TVIvisHdl-~~i-~~aDrIivL~p 922 (972)
T 2r6f_A 848 GGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NGD--TVLVIEHNL-DVI-KTADYIIDLGP 922 (972)
T ss_dssp HHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTC--EEEEECCCH-HHH-TTCSEEEEECS
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCC--EEEEEcCCH-HHH-HhCCEEEEEcC
Confidence 99999999999999875 99999999999999999999999999985 454 999999996 444 689999999
Q ss_pred ----eCCeEEEecChhhHH
Q 044030 254 ----SAGQTVYFGPATAAN 268 (449)
Q Consensus 254 ----~~G~iv~~g~~~~~~ 268 (449)
++|++++.|+++++.
T Consensus 923 ~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 923 EGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp SSTTSCCSEEEEESHHHHH
T ss_pred CCCCCCCEEEEecCHHHHH
Confidence 789999999998764
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=3e-32 Score=300.80 Aligned_cols=208 Identities=27% Similarity=0.344 Sum_probs=157.9
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHH-HHcCCC-------C--C--------
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDA-LAGRLG-------S--D-------- 96 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~-l~G~~~-------~--~-------- 96 (449)
...|+++|+++. +|+|||++|++||++||+|+||||||||+++ |+|.+. + +
T Consensus 500 ~~~L~v~~l~~~-----------~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~ 568 (842)
T 2vf7_A 500 AGWLELNGVTRN-----------NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPAD 568 (842)
T ss_dssp SCEEEEEEEEET-----------TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC--------------
T ss_pred CceEEEEeeeec-----------ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccc
Confidence 346888888642 6999999999999999999999999999997 776531 1 0
Q ss_pred -----CCcee-------EEEECCEeccccc----------------------------------------------CcEE
Q 044030 97 -----TRQTG-------KILINGHKKALAY----------------------------------------------GTSA 118 (449)
Q Consensus 97 -----~~~~G-------~I~~~g~~~~~~~----------------------------------------------~~i~ 118 (449)
...+| .|.++|.++.... +..|
T Consensus 569 ~~~~~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G 648 (842)
T 2vf7_A 569 HTAGSARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEG 648 (842)
T ss_dssp ---CCCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCS
T ss_pred cccccccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCC
Confidence 11367 7888887542100 0111
Q ss_pred EEcCCCCCCC--------------------------------CCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCC
Q 044030 119 YVTQDDTLIT--------------------------------TLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGL 166 (449)
Q Consensus 119 yv~Q~~~l~~--------------------------------~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 166 (449)
++..+..+++ .+|+.|++.|... ....+++.++++.+||
T Consensus 649 ~~~~~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~---------~~~~~~~~~~L~~~gL 719 (842)
T 2vf7_A 649 WVMVELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFAD---------ESAIFRALDTLREVGL 719 (842)
T ss_dssp EEEETTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTT---------SHHHHHHHHHHHHTTC
T ss_pred ccchhhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhc---------chHHHHHHHHHHHcCC
Confidence 2211111222 2355555544211 1123467899999999
Q ss_pred ch-hhCccCCCCChHHHHHHHHHHHHHhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHH
Q 044030 167 QD-AMNTRIRRLSGGQKRRVSISIEILTR---PKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSE 242 (449)
Q Consensus 167 ~~-~~~~~~~~LSgGerqRv~ia~aL~~~---P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~ 242 (449)
.. ..++++..|||||||||+||++|+.+ |+||||||||+|||+.+...+++.|++++++ |. |||++||++ ++
T Consensus 720 ~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~-G~--tVIvisHdl-~~ 795 (842)
T 2vf7_A 720 GYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA-GN--TVIAVEHKM-QV 795 (842)
T ss_dssp TTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT-TC--EEEEECCCH-HH
T ss_pred CcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CC--EEEEEcCCH-HH
Confidence 87 46999999999999999999999996 7999999999999999999999999999854 54 999999996 45
Q ss_pred HHhhcCeEEEe------eCCeEEEecChhhH
Q 044030 243 VFQLFHNLCLL------SAGQTVYFGPATAA 267 (449)
Q Consensus 243 i~~~~D~v~~l------~~G~iv~~g~~~~~ 267 (449)
+ ..||+|++| ++|++++.|+++++
T Consensus 796 i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el 825 (842)
T 2vf7_A 796 V-AASDWVLDIGPGAGEDGGRLVAQGTPAEV 825 (842)
T ss_dssp H-TTCSEEEEECSSSGGGCCSEEEEECHHHH
T ss_pred H-HhCCEEEEECCCCCCCCCEEEEEcCHHHH
Confidence 6 889999999 79999999999876
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.98 E-value=2e-31 Score=296.44 Aligned_cols=199 Identities=24% Similarity=0.321 Sum_probs=153.4
Q ss_pred cceeeeeeEEEecCeEEEEECCCCCcHHHHH---------HHHHcCCCCCC---Cce------eEEEECCEeccc-----
Q 044030 56 SSILEDLTGYAKPGHLLAIMGPSGSGKTTLL---------DALAGRLGSDT---RQT------GKILINGHKKAL----- 112 (449)
Q Consensus 56 ~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL---------~~l~G~~~~~~---~~~------G~I~~~g~~~~~----- 112 (449)
...|+|||++|++|++++|+||||||||||+ +.+.|...+.. ..+ +.+.+++.+...
T Consensus 597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~ 676 (916)
T 3pih_A 597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSN 676 (916)
T ss_dssp STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCC
T ss_pred cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccc
Confidence 3479999999999999999999999999997 44444332210 012 234444432110
Q ss_pred -----------------------------------------ccCcEEEEcCCCCCCC-----------------------
Q 044030 113 -----------------------------------------AYGTSAYVTQDDTLIT----------------------- 128 (449)
Q Consensus 113 -----------------------------------------~~~~i~yv~Q~~~l~~----------------------- 128 (449)
..+..||+.++..++|
T Consensus 677 ~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~ 756 (916)
T 3pih_A 677 PATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITY 756 (916)
T ss_dssp HHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCB
T ss_pred ccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhh
Confidence 0123477777776655
Q ss_pred ---------CCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch-hhCccCCCCChHHHHHHHHHHHHHhCC---
Q 044030 129 ---------TLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD-AMNTRIRRLSGGQKRRVSISIEILTRP--- 195 (449)
Q Consensus 129 ---------~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LSgGerqRv~ia~aL~~~P--- 195 (449)
.+||.|++.|.... ....++.++|+.+||.. ..++++.+|||||||||+||+||+.+|
T Consensus 757 ~g~~i~~vl~~tv~eal~f~~~~---------~~~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p 827 (916)
T 3pih_A 757 KGKNISDILDMTVDEALEFFKNI---------PSIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGR 827 (916)
T ss_dssp TTBCHHHHHSSBHHHHHHHTTTC---------HHHHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSS
T ss_pred ccCCHHHHhhCCHHHHHHHHhcc---------hhHHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCC
Confidence 36788888775321 12345778999999975 468899999999999999999999875
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEe------eCCeEEEecChhhHH
Q 044030 196 KLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLL------SAGQTVYFGPATAAN 268 (449)
Q Consensus 196 ~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l------~~G~iv~~g~~~~~~ 268 (449)
+||||||||+|||+.+...+++.|++++++ |. |||+++|++ +. ...||+|++| ++|++++.|+++++.
T Consensus 828 ~LLILDEPTsGLD~~~~~~L~~lL~~L~~~-G~--TVIvI~HdL-~~-i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~ 901 (916)
T 3pih_A 828 TLYILDEPTVGLHFEDVRKLVEVLHRLVDR-GN--TVIVIEHNL-DV-IKNADHIIDLGPEGGKEGGYIVATGTPEEIA 901 (916)
T ss_dssp EEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TC--EEEEECCCH-HH-HTTCSEEEEEESSSGGGCCEEEEEESHHHHH
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CC--EEEEEeCCH-HH-HHhCCEEEEecCCCCCCCCEEEEEcCHHHHH
Confidence 799999999999999999999999999854 55 999999996 44 4669999999 899999999998875
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.7e-30 Score=262.83 Aligned_cols=199 Identities=20% Similarity=0.264 Sum_probs=144.7
Q ss_pred cceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCC-----------------------------------CCce
Q 044030 56 SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSD-----------------------------------TRQT 100 (449)
Q Consensus 56 ~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~-----------------------------------~~~~ 100 (449)
..+++++|+++.+| +++|+|||||||||||++|+++..+. ...+
T Consensus 48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~ 126 (415)
T 4aby_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGR 126 (415)
T ss_dssp ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSC
T ss_pred ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCc
Confidence 35899999999999 99999999999999999998876420 1236
Q ss_pred eEEEECCEeccc------ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccC-----------------------CCCCC--
Q 044030 101 GKILINGHKKAL------AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQL-----------------------PDTMP-- 149 (449)
Q Consensus 101 G~I~~~g~~~~~------~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~-----------------------~~~~~-- 149 (449)
|++++||.+... ....+++++|++.++.. +..+...|.-.... .....
T Consensus 127 ~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~ 205 (415)
T 4aby_A 127 GAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSK 205 (415)
T ss_dssp EEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred eEEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 889999987542 12348999999876543 55444443221100 00000
Q ss_pred --------------------------------HHHHHHHHHHHHHHcCCchh-----------------------hC---
Q 044030 150 --------------------------------KSDKKERAEVTIREMGLQDA-----------------------MN--- 171 (449)
Q Consensus 150 --------------------------------~~~~~~~v~~~l~~lgL~~~-----------------------~~--- 171 (449)
.......+.+.++.+++... ..
T Consensus 206 ~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 285 (415)
T 4aby_A 206 HPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANP 285 (415)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSS
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCC
Confidence 00011234455666665431 00
Q ss_pred ----ccCCC-CChHHHHHHHHHHHHHhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHH
Q 044030 172 ----TRIRR-LSGGQKRRVSISIEILTRP--KLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVF 244 (449)
Q Consensus 172 ----~~~~~-LSgGerqRv~ia~aL~~~P--~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~ 244 (449)
++++. |||||||||+||++|+.+| ++|||||||+|||+.++..+.+.|++++ + |. |||++||++ ++.
T Consensus 286 ~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~-~~--~vi~itH~~--~~~ 359 (415)
T 4aby_A 286 GEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-D-TR--QVLVVTHLA--QIA 359 (415)
T ss_dssp SCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-T-TS--EEEEECSCH--HHH
T ss_pred CCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-C-CC--EEEEEeCcH--HHH
Confidence 22223 6999999999999999999 9999999999999999999999999997 4 44 999999996 456
Q ss_pred hhcCeEEEe----eCCeEEEec
Q 044030 245 QLFHNLCLL----SAGQTVYFG 262 (449)
Q Consensus 245 ~~~D~v~~l----~~G~iv~~g 262 (449)
..||++++| ++|+++...
T Consensus 360 ~~~d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 360 ARAHHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp TTCSEEEEEEEEEETTEEEEEE
T ss_pred hhcCeEEEEEEeccCCceEEEE
Confidence 889999999 999987653
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-33 Score=293.32 Aligned_cols=185 Identities=14% Similarity=0.097 Sum_probs=148.6
Q ss_pred eeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCcee-E-EEECCEecccccCcEEEEcCCCC---CCCCCCHHH
Q 044030 60 EDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTG-K-ILINGHKKALAYGTSAYVTQDDT---LITTLTVKE 134 (449)
Q Consensus 60 ~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G-~-I~~~g~~~~~~~~~i~yv~Q~~~---l~~~lTv~e 134 (449)
.++|+++++|++++|+||||||||||+|+|+|+..| .+| + |+++|.. .+.++|+||+.. +.+.+||+|
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p---~~G~~pI~vdg~~----~~~i~~vpq~~~l~~~~~~~tv~e 201 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALK---FNAYQPLYINLDP----QQPIFTVPGCISATPISDILDAQL 201 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHH---HHCCCCEEEECCT----TSCSSSCSSCCEEEECCSCCCTTC
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccc---cCCceeEEEcCCc----cCCeeeeccchhhcccccccchhh
Confidence 378899999999999999999999999999999876 489 8 9999832 356899999984 455679999
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHH--HHhCCCE----EEEeC-CCCCC
Q 044030 135 AVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIE--ILTRPKL----LFLDE-PTSGL 207 (449)
Q Consensus 135 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~a--L~~~P~l----lllDE-PtsgL 207 (449)
|+ |+...... .. ..+++.++++.+|+.+..+ +.+|||||||||+||+| |+.+|++ ||||| ||++|
T Consensus 202 ni-~~~~~~~~--~~---~~~~~~~ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~L 273 (460)
T 2npi_A 202 PT-WGQSLTSG--AT---LLHNKQPMVKNFGLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQL 273 (460)
T ss_dssp TT-CSCBCBSS--CC---SSCCBCCEECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGS
T ss_pred hh-cccccccC--cc---hHHHHHHHHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCccccc
Confidence 98 65432111 00 1123556778889988776 88999999999999999 9999999 99999 99999
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCc--H---HHHhhcCe-----EEEee-CCeEEEecChhhH
Q 044030 208 DSAASYYVMSRIAKLGQRDGIGRTIIASIHQPS--S---EVFQLFHN-----LCLLS-AGQTVYFGPATAA 267 (449)
Q Consensus 208 D~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~--~---~i~~~~D~-----v~~l~-~G~iv~~g~~~~~ 267 (449)
|+. ...+.++++ +.+. |+|+++|+.. - ++..+||+ |++|+ +|+++ .|+++++
T Consensus 274 D~~-~~~l~~l~~----~~~~--tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 274 DEN-LAELHHIIE----KLNV--NIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYK 336 (460)
T ss_dssp CSS-CHHHHHHHH----HTTC--CEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHH
T ss_pred Chh-HHHHHHHHH----HhCC--CEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHH
Confidence 999 444444443 3444 9999999964 1 56689999 99999 99999 9988765
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.9e-27 Score=238.50 Aligned_cols=85 Identities=26% Similarity=0.348 Sum_probs=77.0
Q ss_pred CccCCCCChHHHHHHHHHHHHH------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHH
Q 044030 171 NTRIRRLSGGQKRRVSISIEIL------TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVF 244 (449)
Q Consensus 171 ~~~~~~LSgGerqRv~ia~aL~------~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~ 244 (449)
++++.+|||||||||+||+||+ .+|++|||||||+|||+.++..+++.|+++++ .|. |||++||++ . ..
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~-~g~--tvi~itH~~-~-~~ 348 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER-LNK--VIVFITHDR-E-FS 348 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG-SSS--EEEEEESCH-H-HH
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCC--EEEEEecch-H-HH
Confidence 5678899999999999999999 79999999999999999999999999999974 455 999999996 3 47
Q ss_pred hhcCeEEEeeCCeEEE
Q 044030 245 QLFHNLCLLSAGQTVY 260 (449)
Q Consensus 245 ~~~D~v~~l~~G~iv~ 260 (449)
..||++++|++|+++.
T Consensus 349 ~~~d~~~~l~~G~i~~ 364 (365)
T 3qf7_A 349 EAFDRKLRITGGVVVN 364 (365)
T ss_dssp TTCSCEEEEETTEEC-
T ss_pred HhCCEEEEEECCEEEe
Confidence 8899999999999874
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.9e-26 Score=228.85 Aligned_cols=93 Identities=18% Similarity=0.206 Sum_probs=76.7
Q ss_pred hhhCccCCCCChHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHH
Q 044030 168 DAMNTRIRRLSGGQKRRVSISIEIL----TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEV 243 (449)
Q Consensus 168 ~~~~~~~~~LSgGerqRv~ia~aL~----~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i 243 (449)
+..+.++..||||||||++||++|+ .+|+++||||||++||+..+..+.+.|++++ + |. |||++||++ ++
T Consensus 211 ~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~-~~--~vi~~tH~~--~~ 284 (322)
T 1e69_A 211 GRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-K-HT--QFIVITHNK--IV 284 (322)
T ss_dssp TSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-T-TS--EEEEECCCT--TG
T ss_pred ccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CC--eEEEEECCH--HH
Confidence 3467778999999999999999997 5789999999999999999999999999985 3 44 999999995 46
Q ss_pred HhhcCeE--EEeeCCeE-EEecChhh
Q 044030 244 FQLFHNL--CLLSAGQT-VYFGPATA 266 (449)
Q Consensus 244 ~~~~D~v--~~l~~G~i-v~~g~~~~ 266 (449)
...||++ ++|.+|.. +.....++
T Consensus 285 ~~~~d~~~~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 285 MEAADLLHGVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp GGGCSEEEEEEESSSCEEEEECCC--
T ss_pred HhhCceEEEEEEeCCEEEEEEEEcch
Confidence 7899986 77887754 44444444
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.5e-30 Score=241.90 Aligned_cols=142 Identities=16% Similarity=0.158 Sum_probs=100.6
Q ss_pred cccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE--ecccccCcEEEEcCCCCCCCCCC
Q 044030 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH--KKALAYGTSAYVTQDDTLITTLT 131 (449)
Q Consensus 54 ~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~--~~~~~~~~i~yv~Q~~~l~~~lT 131 (449)
+.+.+|+|+ ++||+++|+||||||||||+++|+|+ +| .+|+|..... +.....+.++|+||++
T Consensus 11 g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p---~~G~I~~~~~~~~~~~~~~~ig~v~q~~------- 75 (208)
T 3b85_A 11 GQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-AL---QSKQVSRIILTRPAVEAGEKLGFLPGTL------- 75 (208)
T ss_dssp HHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HH---HTTSCSEEEEEECSCCTTCCCCSSCC---------
T ss_pred hHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CC---cCCeeeeEEecCCchhhhcceEEecCCH-------
Confidence 567899996 89999999999999999999999999 76 3788842111 1111235699999976
Q ss_pred HHHHH-HHHH----hccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 044030 132 VKEAV-YYSA----QLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSG 206 (449)
Q Consensus 132 v~e~l-~~~~----~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsg 206 (449)
+||+ .+.. .+.. ... .++++++++. |+ ||||||+||+||+.+|++|||||||+|
T Consensus 76 -~enl~~~~~~~~~~~~~--~~~----~~~~~~~l~~-gl-------------Gq~qrv~lAraL~~~p~lllLDEPts~ 134 (208)
T 3b85_A 76 -NEKIDPYLRPLHDALRD--MVE----PEVIPKLMEA-GI-------------VEVAPLAYMRGRTLNDAFVILDEAQNT 134 (208)
T ss_dssp -----CTTTHHHHHHHTT--TSC----TTHHHHHHHT-TS-------------EEEEEGGGGTTCCBCSEEEEECSGGGC
T ss_pred -HHHHHHHHHHHHHHHHH--hcc----HHHHHHHHHh-CC-------------chHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 3444 2211 1110 001 1245556654 43 999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCc
Q 044030 207 LDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPS 240 (449)
Q Consensus 207 LD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~ 240 (449)
++..+++.|+++ ++ |. ||| +|||+.
T Consensus 135 ----~~~~l~~~l~~l-~~-g~--tii-vtHd~~ 159 (208)
T 3b85_A 135 ----TPAQMKMFLTRL-GF-GS--KMV-VTGDIT 159 (208)
T ss_dssp ----CHHHHHHHHTTB-CT-TC--EEE-EEEC--
T ss_pred ----cHHHHHHHHHHh-cC-CC--EEE-EECCHH
Confidence 888999999988 33 44 999 999963
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=6.9e-29 Score=254.98 Aligned_cols=179 Identities=15% Similarity=0.118 Sum_probs=142.6
Q ss_pred cceeeeeeEEEecCe--------------------EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccC
Q 044030 56 SSILEDLTGYAKPGH--------------------LLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYG 115 (449)
Q Consensus 56 ~~iL~~vs~~i~~Ge--------------------~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~ 115 (449)
+.+|++||+++++|+ ++||+||||||||||+|+|+|+.+|+ +|+|.++|.+.. +
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~---~GsI~~~g~~~t---~ 109 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEE---EGAAKTGVVEVT---M 109 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTS---TTSCCCCC-------C
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCcc---CceEEECCeecc---e
Confidence 468999999999999 99999999999999999999999774 899999987543 1
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChH--HHHHHHHHHHHHh
Q 044030 116 TSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGG--QKRRVSISIEILT 193 (449)
Q Consensus 116 ~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgG--erqRv~ia~aL~~ 193 (449)
.+|++|++ .++.+|+.|++.++.. +..++++++.+++.+.. ..+. |||| |+||+.||++|+.
T Consensus 110 -~~~v~q~~-~~~~ltv~D~~g~~~~------------~~~~~~~L~~~~L~~~~-~~~~-lS~G~~~kqrv~la~aL~~ 173 (413)
T 1tq4_A 110 -ERHPYKHP-NIPNVVFWDLPGIGST------------NFPPDTYLEKMKFYEYD-FFII-ISATRFKKNDIDIAKAISM 173 (413)
T ss_dssp -CCEEEECS-SCTTEEEEECCCGGGS------------SCCHHHHHHHTTGGGCS-EEEE-EESSCCCHHHHHHHHHHHH
T ss_pred -eEEecccc-ccCCeeehHhhcccch------------HHHHHHHHHHcCCCccC-CeEE-eCCCCccHHHHHHHHHHHh
Confidence 27899985 5778899888754321 12467889999987653 3334 9999 9999999999999
Q ss_pred ----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh----hcC--CCeEEEEEecCCcH-HHHhhcCeEE-EeeC
Q 044030 194 ----------RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQ----RDG--IGRTIIASIHQPSS-EVFQLFHNLC-LLSA 255 (449)
Q Consensus 194 ----------~P~llllDEPtsgLD~~~~~~i~~~l~~l~~----~~g--~g~tii~~tH~~~~-~i~~~~D~v~-~l~~ 255 (449)
+|++++|||||+|||+..+..+++.|+++.+ +.| ...+|++++|+... .+.+++|++. .|.+
T Consensus 174 ~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpe 253 (413)
T 1tq4_A 174 MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI 253 (413)
T ss_dssp TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCcc
Confidence 9999999999999999999999999999852 222 12378999998642 2888888885 4544
Q ss_pred C
Q 044030 256 G 256 (449)
Q Consensus 256 G 256 (449)
|
T Consensus 254 g 254 (413)
T 1tq4_A 254 Y 254 (413)
T ss_dssp G
T ss_pred c
Confidence 4
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5.6e-27 Score=212.88 Aligned_cols=146 Identities=14% Similarity=0.166 Sum_probs=101.0
Q ss_pred eeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCC-CCCCHHHHHHHH
Q 044030 61 DLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLI-TTLTVKEAVYYS 139 (449)
Q Consensus 61 ~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~-~~lTv~e~l~~~ 139 (449)
||||++++||+++|+||||||||||+|++.+- ...+++.. ..++++|++.-. ..-++.+.+.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~---------~~~~~~d~------~~g~~~~~~~~~~~~~~~~~~~~-- 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKP---------TEVISSDF------CRGLMSDDENDQTVTGAAFDVLH-- 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCG---------GGEEEHHH------HHHHHCSSTTCGGGHHHHHHHHH--
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccC---------CeEEccHH------HHHHhcCcccchhhHHHHHHHHH--
Confidence 68999999999999999999999999986531 11121110 125666654210 0001111111
Q ss_pred HhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH---------
Q 044030 140 AQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSA--------- 210 (449)
Q Consensus 140 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~--------- 210 (449)
... ......|.....+. ....|||||||++||+|++.+|++++|||||++||+.
T Consensus 64 ---------------~~~-~~~~~~g~~~~~~~-~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~ 126 (171)
T 4gp7_A 64 ---------------YIV-SKRLQLGKLTVVDA-TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQV 126 (171)
T ss_dssp ---------------HHH-HHHHHTTCCEEEES-CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCC
T ss_pred ---------------HHH-HHHHhCCCeEEEEC-CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCC
Confidence 111 11223455444433 3456999999999999999999999999999999999
Q ss_pred -------HHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHH
Q 044030 211 -------ASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVF 244 (449)
Q Consensus 211 -------~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~ 244 (449)
.+..+.+.|++++++ |. |+|++||++ +++.
T Consensus 127 ~~~vi~~~~~~l~~~l~~l~~~-g~--tvi~vtH~~-~~~~ 163 (171)
T 4gp7_A 127 EEYVIRKHTQQMKKSIKGLQRE-GF--RYVYILNSP-EEVE 163 (171)
T ss_dssp CHHHHHHHHHHHHHHSTTHHHH-TC--SEEEEECSH-HHHH
T ss_pred CHHHHHHHHHHhhhhhhhHHhc-CC--cEEEEeCCH-HHhh
Confidence 668999999999865 55 999999996 3443
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.92 E-value=4.7e-29 Score=233.19 Aligned_cols=182 Identities=13% Similarity=0.097 Sum_probs=126.7
Q ss_pred cccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecc-cccCcEEEEcCCCCCCCCCCH
Q 044030 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKA-LAYGTSAYVTQDDTLITTLTV 132 (449)
Q Consensus 54 ~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~-~~~~~i~yv~Q~~~l~~~lTv 132 (449)
+...+++| .++++||+++|+||||||||||+|+|+|+++. ..+.+.+.+.+.. ...+.++|++|++.+++.+|+
T Consensus 7 ~~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~---i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 81 (207)
T 1znw_A 7 DTKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN---LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLID 81 (207)
T ss_dssp --------------CCCEEEEECSTTSSHHHHHHHHHHHSTT---CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHH
T ss_pred CCCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc---eEEcccccccCCcccccCCCeeEecCHHHHHHHHh
Confidence 34568888 79999999999999999999999999998742 2333222222211 122468999999888888888
Q ss_pred HHHHHHHHhccC---CCCCCHHHHHHHHHHH------HHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCC
Q 044030 133 KEAVYYSAQLQL---PDTMPKSDKKERAEVT------IREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEP 203 (449)
Q Consensus 133 ~e~l~~~~~~~~---~~~~~~~~~~~~v~~~------l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEP 203 (449)
.+++.+...... ..+.+..+.++++++. ++.+|+.+..+++++.|| +|+.+|++++||||
T Consensus 82 ~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS-----------~l~~~p~~~~LDep 150 (207)
T 1znw_A 82 QGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVT-----------VFLAPPSWQDLQAR 150 (207)
T ss_dssp TTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEE-----------EEEECSCHHHHHHH
T ss_pred cCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEE-----------EEEECCCHHHHHHH
Confidence 777632211100 0022344445556665 667788888888899998 99999999999999
Q ss_pred CCCC----CHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEee
Q 044030 204 TSGL----DSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLS 254 (449)
Q Consensus 204 tsgL----D~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~ 254 (449)
|+|+ |+..+..+.+.+++++++.|. |+|++|||+ +++..+||++++|.
T Consensus 151 ~~~l~~~~d~~~~~~l~~~l~~l~~~~g~--tvi~vtHdl-~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 151 LIGRGTETADVIQRRLDTARIELAAQGDF--DKVVVNRRL-ESACAELVSLLVGT 202 (207)
T ss_dssp HHTTSCSCHHHHHHHHHHHHHHHHGGGGS--SEEEECSSH-HHHHHHHHHHHC--
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHhhhccC--cEEEECCCH-HHHHHHHHHHHHhc
Confidence 9998 788999999999999865555 999999996 68999999999985
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.91 E-value=7.5e-26 Score=207.26 Aligned_cols=143 Identities=15% Similarity=0.142 Sum_probs=103.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec---c--cccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKK---A--LAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLP 145 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~---~--~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~ 145 (449)
.++|+||||||||||+++|+|++. |.++|... . ...+.++|++|+. ++.+++ + ..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~--------i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~~-- 63 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG--------KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-F-SSKF-- 63 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG--------GGEEEEEEEEEC------CCEEEEEET------TCCEEE-E-EETT--
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--------CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-H-Hhhc--
Confidence 589999999999999999999873 23344321 1 1235689999975 222332 1 1110
Q ss_pred CCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHH-----HHhCCCEEEEeC--CCCCCCHHHHHHHHHH
Q 044030 146 DTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIE-----ILTRPKLLFLDE--PTSGLDSAASYYVMSR 218 (449)
Q Consensus 146 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~a-----L~~~P~llllDE--PtsgLD~~~~~~i~~~ 218 (449)
.. -.+..++++..||||||||++||+| ++.+|++++||| ||++||+.....+.+.
T Consensus 64 --~~----------------~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~ 125 (178)
T 1ye8_A 64 --FT----------------SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQI 125 (178)
T ss_dssp --CC----------------CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHH
T ss_pred --CC----------------ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHH
Confidence 00 0135677889999999999999996 999999999999 9999999999999888
Q ss_pred HHHHHhhcCCCeEEEEEec---CCcHHHHhhcCeEEEeeCCeEEE
Q 044030 219 IAKLGQRDGIGRTIIASIH---QPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 219 l~~l~~~~g~g~tii~~tH---~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
+++ .+ .|+|+++| + ...+..++|+ .+|+++.
T Consensus 126 l~~----~~--~~~i~~~H~~h~-~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 126 MHD----PN--VNVVATIPIRDV-HPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HTC----TT--SEEEEECCSSCC-SHHHHHHHTC----TTCEEEE
T ss_pred Hhc----CC--CeEEEEEccCCC-chHHHHHHhc----CCcEEEE
Confidence 865 23 37888886 5 4678888987 4566654
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.4e-26 Score=225.67 Aligned_cols=173 Identities=20% Similarity=0.204 Sum_probs=136.1
Q ss_pred eeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc--------c---cCcEEEEcCCCC-C
Q 044030 59 LEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--------A---YGTSAYVTQDDT-L 126 (449)
Q Consensus 59 L~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--------~---~~~i~yv~Q~~~-l 126 (449)
++++|+++++|++++|+||||||||||+++|+|++++. +|+|.++|.+... . ...++|++|++. +
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~ 166 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKA 166 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCcc
Confidence 46789999999999999999999999999999998763 7999999976421 0 135899999988 8
Q ss_pred CCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCC--EEEEeCCC
Q 044030 127 ITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPK--LLFLDEPT 204 (449)
Q Consensus 127 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~--llllDEPt 204 (449)
+|.+|++|++.++.... .. ..+++.+|+.+..++++.+|| |||++||+|++.+|+ +|+|| ||
T Consensus 167 ~~~~~v~e~l~~~~~~~----~d--------~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pt 230 (302)
T 3b9q_A 167 KAATVLSKAVKRGKEEG----YD--------VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GN 230 (302)
T ss_dssp CHHHHHHHHHHHHHHTT----CS--------EEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GG
T ss_pred CHHHHHHHHHHHHHHcC----Cc--------chHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CC
Confidence 89999999998864311 10 134667888887888889999 999999999999999 99999 99
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCc--------HHHHhhcCeEEEeeCCeE
Q 044030 205 SGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPS--------SEVFQLFHNLCLLSAGQT 258 (449)
Q Consensus 205 sgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~--------~~i~~~~D~v~~l~~G~i 258 (449)
+|||+..+ ++++.++.|. |+|++||... +.+....+.|.++..|+.
T Consensus 231 sglD~~~~------~~~~~~~~g~--t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 231 TGLNMLPQ------AREFNEVVGI--TGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp GGGGGHHH------HHHHHHHTCC--CEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CCcCHHHH------HHHHHHhcCC--CEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 99999855 3455544555 9999999421 234455678888888865
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-27 Score=234.94 Aligned_cols=169 Identities=16% Similarity=0.214 Sum_probs=131.0
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCc
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGT 116 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~ 116 (449)
.|+++||++. + + ..+|+|+|++|++|++++|+||||||||||+++|+|++ +|+|
T Consensus 101 ~i~~~~vs~~-y-----~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~------~G~I------------- 154 (305)
T 2v9p_A 101 FFNYQNIELI-T-----F-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL------GGSV------------- 154 (305)
T ss_dssp HHHHTTCCHH-H-----H-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH------TCEE-------------
T ss_pred eEEEEEEEEE-c-----C-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc------CceE-------------
Confidence 3788899987 2 2 56999999999999999999999999999999999986 5877
Q ss_pred EEEEcCCCCCCCCCCHHH-HHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCC
Q 044030 117 SAYVTQDDTLITTLTVKE-AVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRP 195 (449)
Q Consensus 117 i~yv~Q~~~l~~~lTv~e-~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P 195 (449)
++|++|++.+++. |+++ |+.+... .+. .+.+.++.+ |.+.++ +..|||||||| ||||+.+|
T Consensus 155 ~~~v~q~~~lf~~-ti~~~ni~~~~~------~~~-----~~~~~i~~~-L~~gld--g~~LSgGqkQR---ARAll~~p 216 (305)
T 2v9p_A 155 LSFANHKSHFWLA-SLADTRAALVDD------ATH-----ACWRYFDTY-LRNALD--GYPVSIDRKHK---AAVQIKAP 216 (305)
T ss_dssp ECGGGTTSGGGGG-GGTTCSCEEEEE------ECH-----HHHHHHHHT-TTGGGG--TCCEECCCSSC---CCCEECCC
T ss_pred EEEecCccccccc-cHHHHhhccCcc------ccH-----HHHHHHHHH-hHccCC--ccCcCHHHHHH---HHHHhCCC
Confidence 3467888887765 7776 7755311 111 344556654 444445 78999999999 99999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHHHHHHH
Q 044030 196 KLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANEFFAF 273 (449)
Q Consensus 196 ~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~~~f~~ 273 (449)
+||| ||+||+.+...+.. .+|++. ....||+| +|++|++++.|+++++..+|..
T Consensus 217 ~iLl----Ts~LD~~~~~~i~~-----------------ltH~~~--~~~~aD~i-vl~~G~iv~~g~~~el~~~y~~ 270 (305)
T 2v9p_A 217 PLLV----TSNIDVQAEDRYLY-----------------LHSRVQ--TFRFEQPC-TDESGEQPFNITDADWKSFFVR 270 (305)
T ss_dssp CEEE----EESSCSTTCGGGGG-----------------GTTTEE--EEECCCCC-CCC---CCCCCCHHHHHHHHHH
T ss_pred CEEE----ECCCCHHHHHHHHH-----------------HhCCHH--HHHhCCEE-EEeCCEEEEeCCHHHHHHHHHH
Confidence 9999 99999998887751 167753 45789999 9999999999999988666654
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.8e-25 Score=221.54 Aligned_cols=172 Identities=20% Similarity=0.206 Sum_probs=136.7
Q ss_pred eeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----------ccCcEEEEcCCCC-CC
Q 044030 60 EDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-----------AYGTSAYVTQDDT-LI 127 (449)
Q Consensus 60 ~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-----------~~~~i~yv~Q~~~-l~ 127 (449)
.++|+++++|++++|+||||||||||+++|+|++++. +|+|.++|.+... .+..++|++|++. ++
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcccc---CCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 4689999999999999999999999999999998763 7999999976421 0135899999988 88
Q ss_pred CCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCC--EEEEeCCCC
Q 044030 128 TTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPK--LLFLDEPTS 205 (449)
Q Consensus 128 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~--llllDEPts 205 (449)
|.+|++|++.++.... .. ..+++.+|+.+..++++.+|| |||++||++++.+|+ +|+|| ||+
T Consensus 225 p~~tv~e~l~~~~~~~----~d--------~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptt 288 (359)
T 2og2_A 225 AATVLSKAVKRGKEEG----YD--------VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNT 288 (359)
T ss_dssp HHHHHHHHHHHHHHTT----CS--------EEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGG
T ss_pred hhhhHHHHHHHHHhCC----CH--------HHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCC
Confidence 9999999998864311 10 134567788887788889999 999999999999999 99999 999
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCC--------cHHHHhhcCeEEEeeCCeE
Q 044030 206 GLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQP--------SSEVFQLFHNLCLLSAGQT 258 (449)
Q Consensus 206 gLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~--------~~~i~~~~D~v~~l~~G~i 258 (449)
|||+..+. +.+.+..|. |+|++||.. .+.+....+.|..+..|+.
T Consensus 289 glD~~~~~------~~~~~~~g~--t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 289 GLNMLPQA------REFNEVVGI--TGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp GGGGHHHH------HHHHHHTCC--CEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CCCHHHHH------HHHHHhcCC--eEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 99988653 455544555 999999941 1234455678888888864
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.6e-25 Score=216.74 Aligned_cols=145 Identities=19% Similarity=0.192 Sum_probs=98.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc--ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTM 148 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~ 148 (449)
.++|+||||||||||+|+|+|+..|. +|+|.++|.+... ..+.++|++|++.+++.+||.||+.|+.....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~---~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~---- 76 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSR---KASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN---- 76 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBC----
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhccc----
Confidence 48999999999999999999998774 8999999986532 23579999999999999999999988754321
Q ss_pred CHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCC
Q 044030 149 PKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGI 228 (449)
Q Consensus 149 ~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~ 228 (449)
....+.+.+.++ ....+..+.+||||||||+++|||++. ++++|||++|||+.. .+.++.+++. .
T Consensus 77 --~~~~~~i~~~~~----~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~~--~ 141 (270)
T 3sop_A 77 --ENCWEPIEKYIN----EQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSKV--V 141 (270)
T ss_dssp --TTCSHHHHHHHH----HHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHTT--S
T ss_pred --HHHHHHHHHHHH----HHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHhc--C
Confidence 111122333333 456677788999999999999999876 999999999999987 5566666643 4
Q ss_pred CeEEEEEecCC
Q 044030 229 GRTIIASIHQP 239 (449)
Q Consensus 229 g~tii~~tH~~ 239 (449)
+||+++|..
T Consensus 142 --~vI~Vi~K~ 150 (270)
T 3sop_A 142 --NIIPVIAKA 150 (270)
T ss_dssp --EEEEEETTG
T ss_pred --cEEEEEecc
Confidence 888888873
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.2e-26 Score=238.65 Aligned_cols=193 Identities=14% Similarity=0.120 Sum_probs=150.1
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE---eccc
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH---KKAL 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~---~~~~ 112 (449)
..++++|+++. +. .+..+|+++ |.+.+|++++|+||||||||||+++|+|+.+++ +|.|.++|+ +...
T Consensus 130 ~~l~~~~v~~~-~~----tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~---~G~i~~~G~r~~ev~~ 200 (438)
T 2dpy_A 130 NPLQRTPIEHV-LD----TGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD---VIVVGLIGERGREVKD 200 (438)
T ss_dssp CTTTSCCCCSB-CC----CSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHH
T ss_pred CceEEecccee-cC----CCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEeceecHHHHH
Confidence 34778888877 21 246799999 999999999999999999999999999998774 899999998 3211
Q ss_pred ----------ccCcEEEEcCC-CCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHH
Q 044030 113 ----------AYGTSAYVTQD-DTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQ 181 (449)
Q Consensus 113 ----------~~~~i~yv~Q~-~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGe 181 (449)
..+.++|++|+ ..+++.+||.+|+.+.+...... .+.+ ....+ .+..+|+||
T Consensus 201 ~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~-------~~~v---------~~~ld-~l~~lS~g~ 263 (438)
T 2dpy_A 201 FIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDR-------GQHV---------LLIMD-SLTRYAMAQ 263 (438)
T ss_dssp HHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTT-------TCEE---------EEEEE-CHHHHHHHH
T ss_pred HHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhC-------CCCH---------HHHHH-hHHHHHHHH
Confidence 13568999995 55677889999998865432100 0001 11112 256799999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhc-CCCe-----EEEEEecCCcHHHHhhcCeEEEeeC
Q 044030 182 KRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRD-GIGR-----TIIASIHQPSSEVFQLFHNLCLLSA 255 (449)
Q Consensus 182 rqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~-g~g~-----tii~~tH~~~~~i~~~~D~v~~l~~ 255 (449)
|||+|| +.+|++ |+|||+.....+.+++.++.+.. ..|+ ||++++||+. ..+||++++|.+
T Consensus 264 -qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l~d 330 (438)
T 2dpy_A 264 -REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARAILD 330 (438)
T ss_dssp -HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHHHSS
T ss_pred -HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEEEeC
Confidence 999999 889988 99999999999999999987520 1153 9999999975 578999999999
Q ss_pred CeEEEecChhhH
Q 044030 256 GQTVYFGPATAA 267 (449)
Q Consensus 256 G~iv~~g~~~~~ 267 (449)
|+++..|++.++
T Consensus 331 G~Ivl~~~~~~~ 342 (438)
T 2dpy_A 331 GHIVLSRRLAEA 342 (438)
T ss_dssp EEEEECHHHHHT
T ss_pred cEEEEeCCHHHc
Confidence 999999987654
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.4e-22 Score=202.04 Aligned_cols=86 Identities=17% Similarity=0.172 Sum_probs=76.5
Q ss_pred CccCC-CCChHHHHHHHHHHHHH---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCc
Q 044030 171 NTRIR-RLSGGQKRRVSISIEIL---------TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPS 240 (449)
Q Consensus 171 ~~~~~-~LSgGerqRv~ia~aL~---------~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~ 240 (449)
+++++ .||||||||++||++|+ .+|+||||||||++||+..+..+++.|+++. . |+|++||. .
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~----q--t~i~~th~-~ 331 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP----Q--AIVTGTEL-A 331 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS----E--EEEEESSC-C
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC----c--EEEEEEec-c
Confidence 33456 79999999999999999 8999999999999999999999999998763 3 99999995 3
Q ss_pred HHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 241 SEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 241 ~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
. .+|++++|++|+++..|+++++
T Consensus 332 -~---~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 332 -P---GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp -T---TCSEEEEEETTEEEECCCTTTS
T ss_pred -c---cCCEEEEEECCEEEecCCHHHH
Confidence 2 8999999999999999988754
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.87 E-value=8.3e-27 Score=220.13 Aligned_cols=175 Identities=15% Similarity=0.115 Sum_probs=111.1
Q ss_pred cceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc------ccCcEEEEcCCCCCCCC
Q 044030 56 SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL------AYGTSAYVTQDDTLITT 129 (449)
Q Consensus 56 ~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~------~~~~i~yv~Q~~~l~~~ 129 (449)
..-|+||||++++|++++|+||||||||||+++|+|++ | |+|.+ |.+... ....++|++|++.+|+.
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 82 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFED 82 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHH
Confidence 35799999999999999999999999999999999986 3 78888 754321 12458899998776654
Q ss_pred CCH-HHHHHH---HHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHH-----HHHHHhCCCEEEE
Q 044030 130 LTV-KEAVYY---SAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSI-----SIEILTRPKLLFL 200 (449)
Q Consensus 130 lTv-~e~l~~---~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i-----a~aL~~~P~llll 200 (449)
++. .+++.+ ....+ +.+ ...++++++...+. ..+ .+|||||+||++| +++++.+|++++|
T Consensus 83 ~~~~~~~l~~~~~~~~~~---g~~----~~~i~~~l~~~~~~-il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~L 151 (218)
T 1z6g_A 83 KLKNEDFLEYDNYANNFY---GTL----KSEYDKAKEQNKIC-LFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVL 151 (218)
T ss_dssp HHHTTCEEEEEEETTEEE---EEE----HHHHHHHHHTTCEE-EEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHH
T ss_pred hhhccchhhhhhcccccC---CCc----HHHHHHHHhCCCcE-EEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHH
Confidence 321 111111 01111 111 23456666654331 122 5789999999999 8999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhh------cCCCeEEEEEecCCcHHHHhhcCeEE
Q 044030 201 DEPTSGLDSAASYYVMSRIAKLGQR------DGIGRTIIASIHQPSSEVFQLFHNLC 251 (449)
Q Consensus 201 DEPtsgLD~~~~~~i~~~l~~l~~~------~g~g~tii~~tH~~~~~i~~~~D~v~ 251 (449)
||||+++|..+...+.+.|.++.++ .+. +.|+++|++ ++++..+++++
T Consensus 152 de~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~--d~iiv~~~~-~ea~~~~~~ii 205 (218)
T 1z6g_A 152 LSRLLTRNTENQEQIQKRMEQLNIELHEANLLNF--NLSIINDDL-TLTYQQLKNYL 205 (218)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCC--SEEEECSSH-HHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCC--CEEEECCCH-HHHHHHHHHHH
Confidence 9999999999999999999887543 222 455555553 34555544443
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.87 E-value=4.2e-21 Score=192.84 Aligned_cols=81 Identities=23% Similarity=0.322 Sum_probs=71.3
Q ss_pred hhCccCCCCChHHHH------HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHH
Q 044030 169 AMNTRIRRLSGGQKR------RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSE 242 (449)
Q Consensus 169 ~~~~~~~~LSgGerq------Rv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~ 242 (449)
..++++..||||||| |+++|++|+.+|++|||||||+|||+..+..+++.|+++.++ |. |||++||++ +
T Consensus 241 ~~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~-~~--~vi~~sH~~--~ 315 (339)
T 3qkt_A 241 GKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IP--QVILVSHDE--E 315 (339)
T ss_dssp TEEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGG-SS--EEEEEESCG--G
T ss_pred cCcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CC--EEEEEEChH--H
Confidence 346778999999999 667778888899999999999999999999999999998744 44 999999994 4
Q ss_pred HHhhcCeEEEee
Q 044030 243 VFQLFHNLCLLS 254 (449)
Q Consensus 243 i~~~~D~v~~l~ 254 (449)
+...||++++|.
T Consensus 316 ~~~~~d~~~~l~ 327 (339)
T 3qkt_A 316 LKDAADHVIRIS 327 (339)
T ss_dssp GGGGCSEEEEEE
T ss_pred HHHhCCEEEEEE
Confidence 788999999986
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.4e-23 Score=204.67 Aligned_cols=185 Identities=13% Similarity=0.166 Sum_probs=122.1
Q ss_pred ccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCcee-EEEECCEeccc--ccCcEEEEcCCCCCCCCCC
Q 044030 55 SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTG-KILINGHKKAL--AYGTSAYVTQDDTLITTLT 131 (449)
Q Consensus 55 ~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G-~I~~~g~~~~~--~~~~i~yv~Q~~~l~~~lT 131 (449)
+..+|+++++.+++|++++|+||||||||||+++|+|...+. +| .|.+.+.+... ..+++.++.+... ++
T Consensus 21 g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~---~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~ 93 (296)
T 1cr0_A 21 GCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA---MGKKVGLAMLEESVEETAEDLIGLHNRVR----LR 93 (296)
T ss_dssp SCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT---SCCCEEEEESSSCHHHHHHHHHHHHTTCC----GG
T ss_pred CHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH---cCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hh
Confidence 356899999999999999999999999999999999988653 46 56443322111 0112222333221 12
Q ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHH-HHHHHHHHHHHhCCCEEEEeCCCC---C-
Q 044030 132 VKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQ-KRRVSISIEILTRPKLLFLDEPTS---G- 206 (449)
Q Consensus 132 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGe-rqRv~ia~aL~~~P~llllDEPts---g- 206 (449)
+.+++.... + +..+..+.++++++..++. .+..+..+|.+| +||+. |+++..+|+++++||||+ +
T Consensus 94 ~~~~l~~~~-~------~~~~~~~~~~~~l~~~~l~--i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~ 163 (296)
T 1cr0_A 94 QSDSLKREI-I------ENGKFDQWFDELFGNDTFH--LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSAS 163 (296)
T ss_dssp GCHHHHHHH-H------HHTHHHHHHHHHHSSSCEE--EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC------
T ss_pred hccccccCC-C------CHHHHHHHHHHHhccCCEE--EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCC
Confidence 223333221 1 1222333444444433331 233346789999 66666 999999999999999999 5
Q ss_pred --CCH-HHHHHHHHHHHHHHhhcCCCeEEEEEecCCc-H--------------------HHHhhcCeEEEeeCCeE
Q 044030 207 --LDS-AASYYVMSRIAKLGQRDGIGRTIIASIHQPS-S--------------------EVFQLFHNLCLLSAGQT 258 (449)
Q Consensus 207 --LD~-~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~-~--------------------~i~~~~D~v~~l~~G~i 258 (449)
+|. .....+++.|++++++.|. |||+++|+.. . .+.++||+|++|++|+.
T Consensus 164 ~~~d~~~~~~~i~~~L~~la~~~~~--~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 164 GESDERKMIDNLMTKLKGFAKSTGV--VLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp -----CHHHHHHHHHHHHHHHHHCC--EEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCC--eEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 555 6778899999999877766 9999999951 2 57889999999998874
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.3e-23 Score=208.59 Aligned_cols=130 Identities=17% Similarity=0.206 Sum_probs=106.4
Q ss_pred eeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecc-c--ccCcEEEEcCCCCCCCCCCHHH
Q 044030 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKA-L--AYGTSAYVTQDDTLITTLTVKE 134 (449)
Q Consensus 58 iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~-~--~~~~i~yv~Q~~~l~~~lTv~e 134 (449)
+++++|+.+++|++++|+||||||||||+++|+|+++|. +|.|.++|.+.- . ..+.+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~---~g~i~i~~~~e~~~~~~~~~i~~~~------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE---ERIISIEDTEEIVFKHHKNYTQLFF------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT---SCEEEEESSCCCCCSSCSSEEEEEC-------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CcEEEECCeeccccccchhEEEEEe-------------
Confidence 789999999999999999999999999999999999774 899999986421 0 112233332
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHH
Q 044030 135 AVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYY 214 (449)
Q Consensus 135 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~ 214 (449)
+ |||+||++||+||..+|+++++||||+ .+
T Consensus 224 -----------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~-------~e 253 (330)
T 2pt7_A 224 -----------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRS-------SE 253 (330)
T ss_dssp -----------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCS-------TH
T ss_pred -----------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCCh-------HH
Confidence 0 899999999999999999999999998 23
Q ss_pred HHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeE
Q 044030 215 VMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQT 258 (449)
Q Consensus 215 i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~i 258 (449)
+.+.|+.+. ..+ .|+|+++|+++ +...+|++++|.+|..
T Consensus 254 ~~~~l~~~~-~g~--~tvi~t~H~~~--~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 254 AYDFYNVLC-SGH--KGTLTTLHAGS--SEEAFIRLANMSSSNS 292 (330)
T ss_dssp HHHHHHHHH-TTC--CCEEEEEECSS--HHHHHHHHHHHHHTSG
T ss_pred HHHHHHHHh-cCC--CEEEEEEcccH--HHHHhhhheehhcCCc
Confidence 567787776 322 38999999974 7889999999998854
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.2e-23 Score=199.78 Aligned_cols=177 Identities=11% Similarity=0.125 Sum_probs=112.4
Q ss_pred cccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHH
Q 044030 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVK 133 (449)
Q Consensus 54 ~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~ 133 (449)
+++.+|+|+||++++|+++||+||||||||||+++|+|++ |.+.++ ...+.++|++|++ +++.+|+.
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l-------G~~~~~-----~~~~~i~~v~~d~-~~~~l~~~ 76 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL-------GQNEVE-----QRQRKVVILSQDR-FYKVLTAE 76 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH-------TGGGSC-----GGGCSEEEEEGGG-GBCCCCHH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh-------chhccc-----ccCCceEEEeCCc-CccccCHh
Confidence 5678999999999999999999999999999999999965 333333 1235699999985 77889999
Q ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Q 044030 134 EAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASY 213 (449)
Q Consensus 134 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~ 213 (449)
+++.+....... ..+.....+.+.+.++.+ .+..+.++..||+||+||+.+ ++++.+|+++|+|||....|..
T Consensus 77 ~~~~~~~~~~~~-~~~~~~~~~~~~~~L~~l--~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--- 149 (245)
T 2jeo_A 77 QKAKALKGQYNF-DHPDAFDNDLMHRTLKNI--VEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--- 149 (245)
T ss_dssp HHHHHHTTCCCT-TSGGGBCHHHHHHHHHHH--HTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH---
T ss_pred HhhhhhccCCCC-CCcccccHHHHHHHHHHH--HCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH---
Confidence 998775433210 111111123344555543 456677889999999999988 5888899999999999888864
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEecCCcHHHHh-hcCeEEEeeCCeEEEecChhhHHH
Q 044030 214 YVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQ-LFHNLCLLSAGQTVYFGPATAANE 269 (449)
Q Consensus 214 ~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~-~~D~v~~l~~G~iv~~g~~~~~~~ 269 (449)
+.++ . +.+|++++|+. ..+.+ +++++ ++|+ +.+++..
T Consensus 150 -----l~~~---~--~~~i~v~th~~-~~~~r~~~r~~---~~G~-----~~e~~~~ 187 (245)
T 2jeo_A 150 -----IRDM---F--HLRLFVDTDSD-VRLSRRVLRDV---RRGR-----DLEQILT 187 (245)
T ss_dssp -----HHTT---C--SEEEEEECCHH-HHHHHHHHHHT---C--------CHHHHHH
T ss_pred -----HHHh---c--CeEEEEECCHH-HHHHHHHHHHH---HcCC-----CHHHHHH
Confidence 2222 2 44999999973 34433 44444 5664 4555544
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.85 E-value=8.8e-22 Score=219.15 Aligned_cols=163 Identities=22% Similarity=0.320 Sum_probs=126.1
Q ss_pred HHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCH--H---HHHHHHH
Q 044030 84 TLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPK--S---DKKERAE 158 (449)
Q Consensus 84 TLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~--~---~~~~~v~ 158 (449)
|...|..+++.+. .|+|.++|+++.. +..+|+.+++.|...+.+...... . .......
T Consensus 383 ~C~~C~g~rl~~~---~~~V~i~G~~i~~--------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~ 445 (916)
T 3pih_A 383 TCSVCGGRRLNRE---ALSVKINGLNIHE--------------FTELSISEELEFLKNLNLTEREREIVGELLKEIEKRL 445 (916)
T ss_dssp ECTTTCSCCBCTT---GGGEEETTEEHHH--------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHH
T ss_pred cchhcccccCChH---hcCcEECCccHHH--------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHH
Confidence 3445666667663 8999999987531 344688888887654432211000 0 1112345
Q ss_pred HHHHHcCCchh-hCccCCCCChHHHHHHHHHHHHHhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEE
Q 044030 159 VTIREMGLQDA-MNTRIRRLSGGQKRRVSISIEILTRPK--LLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIAS 235 (449)
Q Consensus 159 ~~l~~lgL~~~-~~~~~~~LSgGerqRv~ia~aL~~~P~--llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~ 235 (449)
+.+..+||... +++++.+|||||||||+||+||+.+|+ +|||||||+|||+.....+++.|+++++ .|. |||++
T Consensus 446 ~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~-~G~--TvivV 522 (916)
T 3pih_A 446 EFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRD-LGN--TVIVV 522 (916)
T ss_dssp HHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTT-TTC--EEEEE
T ss_pred HHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHh-cCC--EEEEE
Confidence 67888999865 799999999999999999999999887 9999999999999999999999999974 455 99999
Q ss_pred ecCCcHHHHhhcCeEEEe------eCCeEEEecChhhHH
Q 044030 236 IHQPSSEVFQLFHNLCLL------SAGQTVYFGPATAAN 268 (449)
Q Consensus 236 tH~~~~~i~~~~D~v~~l------~~G~iv~~g~~~~~~ 268 (449)
+||+ +. ...||+|++| ++|++++.|+++++.
T Consensus 523 tHd~-~~-~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~ 559 (916)
T 3pih_A 523 EHDE-EV-IRNADHIIDIGPGGGTNGGRVVFQGTVDELL 559 (916)
T ss_dssp CCCH-HH-HHTCSEEEEEESSSGGGCSEEEEEECHHHHH
T ss_pred eCCH-HH-HHhCCEEEEEcCCcccCCCEEEEeechhhhh
Confidence 9995 44 4569999999 899999999998764
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.8e-21 Score=206.16 Aligned_cols=78 Identities=18% Similarity=0.326 Sum_probs=70.4
Q ss_pred cCCCC-ChHHHHHHHHHHHHHhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCe
Q 044030 173 RIRRL-SGGQKRRVSISIEILTRP--KLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHN 249 (449)
Q Consensus 173 ~~~~L-SgGerqRv~ia~aL~~~P--~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~ 249 (449)
++..| ||||||||+||++|+.+| ++|||||||+|||+.++..|.+.|+++++ |. |||++||++ ++...||+
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~--~vi~itH~~--~~~~~~d~ 466 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TR--QVLVVTHLA--QIAARAHH 466 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HS--EEEEECCCH--HHHHHSSE
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CC--EEEEEecCH--HHHHhCCE
Confidence 45677 999999999999999999 99999999999999999999999999984 45 999999996 35567999
Q ss_pred EEEeeCC
Q 044030 250 LCLLSAG 256 (449)
Q Consensus 250 v~~l~~G 256 (449)
+++|++|
T Consensus 467 ~~~~~~~ 473 (517)
T 4ad8_A 467 HYKVEKQ 473 (517)
T ss_dssp EEEEECC
T ss_pred EEEEecc
Confidence 9999665
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.4e-22 Score=226.90 Aligned_cols=174 Identities=20% Similarity=0.210 Sum_probs=121.2
Q ss_pred eeEEEEe-----eEEEEeecCcccccceeeeeeEEEec-------CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEE
Q 044030 36 VFLTWKD-----LTVTIVSNGKKGSSSILEDLTGYAKP-------GHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKI 103 (449)
Q Consensus 36 ~~l~~~n-----ls~~~~~~~~~~~~~iL~~vs~~i~~-------Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I 103 (449)
..|+++| |++.| . ++..+++|++|.+++ |++++|+||||||||||||+| |++.+
T Consensus 749 ~~l~i~~~rHP~l~~~~-~----~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~-------- 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTF-F----GDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV-------- 814 (1022)
T ss_dssp CCEEEEEECCCC-----------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH--------
T ss_pred ceEEEEeccccEEEEEe-c----CCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH--------
Confidence 3589999 88762 1 346799999999987 999999999999999999999 97632
Q ss_pred EECCEecccccCcEE-EEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHH
Q 044030 104 LINGHKKALAYGTSA-YVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQK 182 (449)
Q Consensus 104 ~~~g~~~~~~~~~i~-yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGer 182 (449)
..++| ||||+.. .+||.+++.. .+|+.+........+|++++
T Consensus 815 ----------~aqiG~~Vpq~~~---~l~v~d~I~~------------------------rig~~d~~~~~~stf~~em~ 857 (1022)
T 2o8b_B 815 ----------MAQMGCYVPAEVC---RLTPIDRVFT------------------------RLGASDRIMSGESTFFVELS 857 (1022)
T ss_dssp ----------HHTTTCCEESSEE---EECCCSBEEE------------------------ECC---------CHHHHHHH
T ss_pred ----------HhheeEEeccCcC---CCCHHHHHHH------------------------HcCCHHHHhhchhhhHHHHH
Confidence 01234 8999753 3455554410 12222222233456777766
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHH-HHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEE--
Q 044030 183 RRVSISIEILTRPKLLFLDEPTSGLDSAAS-YYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTV-- 259 (449)
Q Consensus 183 qRv~ia~aL~~~P~llllDEPtsgLD~~~~-~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv-- 259 (449)
+ +++|++++.+|+++|||||++|+|+... ..++.+|+.++++.|. ++|++||++ +.+..++|++.++ +|++.
T Consensus 858 ~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~--~vl~~TH~~-el~~~~~d~~~v~-~g~~~~~ 932 (1022)
T 2o8b_B 858 E-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKC--RTLFSTHYH-SLVEDYSQNVAVR-LGHMACM 932 (1022)
T ss_dssp H-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCC--EEEEECCCH-HHHHHTSSCSSEE-EEEEEEC
T ss_pred H-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCC--EEEEEeCCH-HHHHHhCCcceee-cCeEEEE
Confidence 5 9999999999999999999999999985 5578999999855466 999999995 5677789999887 48887
Q ss_pred EecChh
Q 044030 260 YFGPAT 265 (449)
Q Consensus 260 ~~g~~~ 265 (449)
+.|+++
T Consensus 933 ~~~~~~ 938 (1022)
T 2o8b_B 933 VENECE 938 (1022)
T ss_dssp ------
T ss_pred EecCcc
Confidence 455543
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=5.9e-23 Score=206.88 Aligned_cols=191 Identities=15% Similarity=0.166 Sum_probs=137.1
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL--- 112 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~--- 112 (449)
..++.+++++.| . .+..+|+++ |.|.+|++++|+||||||||||+++|+|...++ .|.|.+.|++...
T Consensus 44 ~~i~~~~l~~~~-~----tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~---~g~i~~~G~~~~ev~~ 114 (347)
T 2obl_A 44 DPLLRQVIDQPF-I----LGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD---IIVLALIGERGREVNE 114 (347)
T ss_dssp CSTTCCCCCSEE-C----CSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHH
T ss_pred CCeeecccceec-C----CCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC---EEEEEEecccHHHHHH
Confidence 347888998873 1 246799999 999999999999999999999999999998774 8999998864210
Q ss_pred ---------ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhh--CccCCCCChHH
Q 044030 113 ---------AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAM--NTRIRRLSGGQ 181 (449)
Q Consensus 113 ---------~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~--~~~~~~LSgGe 181 (449)
..+.+.+++|.+. +..+.+.-... ...+.+.....+- +.. -..+..||+||
T Consensus 115 ~i~~~~~~~~~~~v~~~~~~~~-----~~~~r~~~~~~------------~~~~ae~~~~~~~-~vl~~ld~~~~lS~g~ 176 (347)
T 2obl_A 115 FLALLPQSTLSKCVLVVTTSDR-----PALERMKAAFT------------ATTIAEYFRDQGK-NVLLMMDSVTRYARAA 176 (347)
T ss_dssp HHTTSCHHHHTTEEEEEECTTS-----CHHHHHHHHHH------------HHHHHHHHHTTTC-EEEEEEETHHHHHHHH
T ss_pred HHHhhhhhhhhceEEEEECCCC-----CHHHHHHHHHH------------HHHHHHHHHhccc-cHHHHHhhHHHHHHHH
Confidence 1134677776432 22222211100 0001111111110 100 04567899999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCe-----EEEEEecCCcHHHHhhcCeEEEeeCC
Q 044030 182 KRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGR-----TIIASIHQPSSEVFQLFHNLCLLSAG 256 (449)
Q Consensus 182 rqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~-----tii~~tH~~~~~i~~~~D~v~~l~~G 256 (449)
|||++| +.+|++ |+|||+.....+.+++.++.+..+ |. ||++++||+. ..+||++++|.+|
T Consensus 177 -r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~-GsiT~~~tVl~~thdl~---~~i~d~v~~i~dG 242 (347)
T 2obl_A 177 -RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPK-GSITAIYTVLLESDNVN---DPIGDEVRSILDG 242 (347)
T ss_dssp -HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSS-SEEEEEEEEECCSSCCC---CHHHHHHHHHCSE
T ss_pred -HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCC-CCeeeEEEEEEeCCCCC---ChhhhheEEeeCc
Confidence 899999 688877 999999999999999999874112 66 8999999975 5789999999999
Q ss_pred eEEEecChhhH
Q 044030 257 QTVYFGPATAA 267 (449)
Q Consensus 257 ~iv~~g~~~~~ 267 (449)
+++..+++++.
T Consensus 243 ~Ivl~~~l~~~ 253 (347)
T 2obl_A 243 HIVLTRELAEE 253 (347)
T ss_dssp EEEBCHHHHTT
T ss_pred EEEEeCCHHHc
Confidence 99999887654
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.9e-21 Score=206.32 Aligned_cols=156 Identities=14% Similarity=0.117 Sum_probs=122.2
Q ss_pred eEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHHHHHHHhc
Q 044030 63 TGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQL 142 (449)
Q Consensus 63 s~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~ 142 (449)
++.+++|++++|+||||||||||+++++|...+ .|+ +.+.|++|+.. ..+.++. ..+
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~----~G~------------~vi~~~~ee~~----~~l~~~~---~~~ 331 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA----NKE------------RAILFAYEESR----AQLLRNA---YSW 331 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT----TTC------------CEEEEESSSCH----HHHHHHH---HTT
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh----CCC------------CEEEEEEeCCH----HHHHHHH---HHc
Confidence 558999999999999999999999999998754 232 12456676541 1222222 111
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH-----HHHHHHH
Q 044030 143 QLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSA-----ASYYVMS 217 (449)
Q Consensus 143 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~-----~~~~i~~ 217 (449)
+.+. ++ +...|+....+..+..|||||+||+.+|+++..+|+++++| ||+|||.. .+..+.+
T Consensus 332 ----g~~~-------~~-~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ 398 (525)
T 1tf7_A 332 ----GMDF-------EE-MERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIG 398 (525)
T ss_dssp ----SCCH-------HH-HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHH
T ss_pred ----CCCH-------HH-HHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHH
Confidence 1221 12 33567777888899999999999999999999999999999 99999999 9999999
Q ss_pred HHHHHHhhcCCCeEEEEEecCCc---------HHHHhhcCeEEEeeCCe
Q 044030 218 RIAKLGQRDGIGRTIIASIHQPS---------SEVFQLFHNLCLLSAGQ 257 (449)
Q Consensus 218 ~l~~l~~~~g~g~tii~~tH~~~---------~~i~~~~D~v~~l~~G~ 257 (449)
+++.+++ .|. |||+++|+.. ..+..+||+|++|++|+
T Consensus 399 ll~~l~~-~g~--tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 399 VTGYAKQ-EEI--TGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHH-TTC--EEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHh-CCC--EEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 9999874 455 9999999961 35678999999999886
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-23 Score=208.28 Aligned_cols=144 Identities=11% Similarity=0.064 Sum_probs=114.4
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEE-----------------------EecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGY-----------------------AKPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~-----------------------i~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.|+++||++.| .++++++++. +++|+++||+||||||||||+++|+|++
T Consensus 43 ~i~~~~v~~~y--------~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 43 QIDLLEVEEVY--------LPLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCHHHHHHTH--------HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEeeehhhhh--------hhHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 47888998762 1355555553 8999999999999999999999999998
Q ss_pred CCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCcc
Q 044030 94 GSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTR 173 (449)
Q Consensus 94 ~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 173 (449)
++. .|. +.++||+|++.+++. |+.||+.+... .+.+.....+.+.++++.++ ....+.+
T Consensus 115 ~~~---~G~------------~~v~~v~qd~~~~~~-t~~e~~~~~~~----~g~~~~~d~~~~~~~L~~l~-~~~~~~~ 173 (312)
T 3aez_A 115 ARW---DHH------------PRVDLVTTDGFLYPN-AELQRRNLMHR----KGFPESYNRRALMRFVTSVK-SGSDYAC 173 (312)
T ss_dssp HTS---TTC------------CCEEEEEGGGGBCCH-HHHHHTTCTTC----TTSGGGBCHHHHHHHHHHHH-TTCSCEE
T ss_pred ccc---CCC------------CeEEEEecCccCCcc-cHHHHHHHHHh----cCCChHHHHHHHHHHHHHhC-CCcccCC
Confidence 763 231 358999999999888 99999854211 12233333456778888888 5556778
Q ss_pred CCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 044030 174 IRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDS 209 (449)
Q Consensus 174 ~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~ 209 (449)
+..|||||+||+++|++++.+|+|||+|||+..+|+
T Consensus 174 ~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 174 APVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp EEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred cccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 899999999999999999999999999999999986
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=5.8e-24 Score=225.68 Aligned_cols=167 Identities=14% Similarity=0.115 Sum_probs=123.7
Q ss_pred cccceeeeeeE-EEecCeEEEEECCCCCcHHHHHHH--HHcCCCCCCCceeEEEECCEeccc----ccCcEEEEcCCCCC
Q 044030 54 GSSSILEDLTG-YAKPGHLLAIMGPSGSGKTTLLDA--LAGRLGSDTRQTGKILINGHKKAL----AYGTSAYVTQDDTL 126 (449)
Q Consensus 54 ~~~~iL~~vs~-~i~~Ge~~~IlGpnGaGKSTLL~~--l~G~~~~~~~~~G~I~~~g~~~~~----~~~~i~yv~Q~~~l 126 (449)
++..+|++||+ .+++|++++|+||||||||||+++ ++|+.+|+ +|.|+++|.+... ..+.+||++|+...
T Consensus 23 ~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~---~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~ 99 (525)
T 1tf7_A 23 TMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFD---EPGVFVTFEETPQDIIKNARSFGWDLAKLVD 99 (525)
T ss_dssp CCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHC---CCEEEEESSSCHHHHHHHHGGGTCCHHHHHH
T ss_pred CCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC---CCEEEEEEeCCHHHHHHHHHHcCCChHHhhc
Confidence 45789999999 999999999999999999999999 78998764 7999999976321 12457899987542
Q ss_pred CCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCC-
Q 044030 127 ITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTS- 205 (449)
Q Consensus 127 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPts- 205 (449)
.+. +.+ .... . .. ...++++.+++.+.+++.+..||||| |+++++||||+
T Consensus 100 ~~~------l~~---~~~~-~-~~-----~~~~~l~~~~l~~~~~~~~~~LS~g~-------------~~~lilDe~t~~ 150 (525)
T 1tf7_A 100 EGK------LFI---LDAS-P-DP-----EGQEVVGGFDLSALIERINYAIQKYR-------------ARRVSIDSVTSV 150 (525)
T ss_dssp TTS------EEE---EECC-C-CS-----SCCSCCSSHHHHHHHHHHHHHHHHHT-------------CSEEEEECSTTT
T ss_pred cCc------EEE---EecC-c-cc-----chhhhhcccCHHHHHHHHHHHHHHcC-------------CCEEEECCHHHH
Confidence 211 100 0000 0 00 01123445556666677777788775 78999999998
Q ss_pred ----CCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHH--------HHhhcCeEEEeeC
Q 044030 206 ----GLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSE--------VFQLFHNLCLLSA 255 (449)
Q Consensus 206 ----gLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~--------i~~~~D~v~~l~~ 255 (449)
+||+..+..++++++.+++ .|. |||+++|++... +..+||+|++|++
T Consensus 151 ~~~~~lD~~~~~~l~~ll~~l~~-~g~--tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 151 FQQYDASSVVRRELFRLVARLKQ-IGA--TTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp STTTCCHHHHHHHHHHHHHHHHH-HTC--EEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred HHhcCCHHHHHHHHHHHHHHHHH-CCC--EEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 5699999999999999985 455 999999997532 3456999999998
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-20 Score=209.89 Aligned_cols=154 Identities=14% Similarity=0.160 Sum_probs=112.3
Q ss_pred cccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHH--------HcCCCCCCCceeEEEECCEecccccCcEEEEcCCCC
Q 044030 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDAL--------AGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDT 125 (449)
Q Consensus 54 ~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l--------~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~ 125 (449)
+.+.+++|+|+.+++|++++|+||||||||||||++ .|..-|. .+.. ++.+ +.
T Consensus 647 ~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa---~~~~-------------~~~~---d~ 707 (934)
T 3thx_A 647 EIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPC---ESAE-------------VSIV---DC 707 (934)
T ss_dssp -CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSE---EEEE-------------EECC---SE
T ss_pred CceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccc---cccc-------------chHH---HH
Confidence 345799999999999999999999999999999999 4433221 1110 1100 00
Q ss_pred CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHH--HhCCCEEEEeCC
Q 044030 126 LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEI--LTRPKLLFLDEP 203 (449)
Q Consensus 126 l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL--~~~P~llllDEP 203 (449)
+ +..+|+. +....++|+|+++++.+|+++ +.+|+++|||||
T Consensus 708 i----------------------------------~~~ig~~---d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp 750 (934)
T 3thx_A 708 I----------------------------------LARVGAG---DSQLKGVSTFMAEMLETASILRSATKDSLIIIDEL 750 (934)
T ss_dssp E----------------------------------EEECC------------CHHHHHHHHHHHHHHHCCTTCEEEEESC
T ss_pred H----------------------------------HHhcCch---hhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCC
Confidence 0 1111211 223356888888888888888 999999999999
Q ss_pred CCCCCHHHHHHH-HHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 204 TSGLDSAASYYV-MSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 204 tsgLD~~~~~~i-~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
|+|||+.....+ +.+++.++++.|. ++|++||+. ++..++|++..+.+|++.+.++.+++
T Consensus 751 ~~GlD~~~~~~i~~~il~~l~~~~g~--~vl~aTH~~--el~~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 751 GRGTSTYDGFGLAWAISEYIATKIGA--FCMFATHFH--ELTALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp SCSSCHHHHHHHHHHHHHHHHHTTCC--EEEEEESCG--GGGGGGGTCTTEEEEEEEEEEETTEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCC--EEEEEcCcH--HHHHHhcccceeEeeEEEEEecCCcE
Confidence 999999998888 7777888754555 999999994 57789999999999999988876654
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.82 E-value=4.6e-20 Score=204.48 Aligned_cols=135 Identities=23% Similarity=0.382 Sum_probs=110.6
Q ss_pred CCCCHHHHHHHHHhccCCCC---CCH---HHHHHHHHHHHHHcCCchh-hCccCCCCChHHHHHHHHHHHHHhCC--CEE
Q 044030 128 TTLTVKEAVYYSAQLQLPDT---MPK---SDKKERAEVTIREMGLQDA-MNTRIRRLSGGQKRRVSISIEILTRP--KLL 198 (449)
Q Consensus 128 ~~lTv~e~l~~~~~~~~~~~---~~~---~~~~~~v~~~l~~lgL~~~-~~~~~~~LSgGerqRv~ia~aL~~~P--~ll 198 (449)
..+||.|++.|...+.++.. ... ++..+++ +.|..+||... +++.+.+|||||||||.||++|..+| ++|
T Consensus 450 ~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~ll 528 (972)
T 2r6f_A 450 TAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLY 528 (972)
T ss_dssp HTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEE
T ss_pred hhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEE
Confidence 35899999999766643210 000 2334455 45889999875 79999999999999999999999985 999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEe------eCCeEEEecChhhHH
Q 044030 199 FLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLL------SAGQTVYFGPATAAN 268 (449)
Q Consensus 199 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l------~~G~iv~~g~~~~~~ 268 (449)
+|||||+|||+.....+++.|+++++ .|. |||+++|++ ++ ...||+|++| ++|++++.|+++++.
T Consensus 529 ILDEPTagLdp~~~~~L~~~L~~Lr~-~G~--TVIvVeHdl-~~-i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~ 599 (972)
T 2r6f_A 529 VLDEPSIGLHQRDNDRLIATLKSMRD-LGN--TLIVVEHDE-DT-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 599 (972)
T ss_dssp EEECTTTTCCGGGHHHHHHHHHHHHT-TTC--EEEEECCCH-HH-HHSCSEEEEECSSSGGGCCSEEEEECTTTTT
T ss_pred EEeCcccCCCHHHHHHHHHHHHHHHh-CCC--EEEEEecCH-HH-HHhCCEEEEeCCCccCCCCEEEEecCHHHHH
Confidence 99999999999999999999999974 555 999999996 44 4679999999 799999999987653
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.2e-21 Score=182.20 Aligned_cols=161 Identities=20% Similarity=0.207 Sum_probs=101.9
Q ss_pred eeeeee-EEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCC----CceeEEEECCEecccccCcEEEEcCCCCCCCCCCH
Q 044030 58 ILEDLT-GYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDT----RQTGKILINGHKKALAYGTSAYVTQDDTLITTLTV 132 (449)
Q Consensus 58 iL~~vs-~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~----~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv 132 (449)
.|+.+- +-+++|++++|+||||||||||+++|+|...+.. ...|.+++++... ...+.+++++|...+++. |+
T Consensus 13 ~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~-~~~~~i~~~~~~~~~~~~-~~ 90 (231)
T 4a74_A 13 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT-FRPERIREIAQNRGLDPD-EV 90 (231)
T ss_dssp HHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC-CCHHHHHHHHHHTTSCHH-HH
T ss_pred hHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC-CCHHHHHHHHHHcCCCHH-HH
Confidence 444333 5799999999999999999999999999554310 1234666666431 011234445554444333 44
Q ss_pred HHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHH-HHHHHHHHHHHh-------CCCEEEEeCCC
Q 044030 133 KEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQ-KRRVSISIEILT-------RPKLLFLDEPT 204 (449)
Q Consensus 133 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGe-rqRv~ia~aL~~-------~P~llllDEPt 204 (449)
.||+.+. ...++++ ++.+..+.+++. +|+++++||||
T Consensus 91 ~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 135 (231)
T 4a74_A 91 LKHIYVA-----------------------------------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 135 (231)
T ss_dssp HHTEEEE-----------------------------------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSS
T ss_pred hhcEEEE-----------------------------------ecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChH
Confidence 4443221 1122222 223444555554 99999999999
Q ss_pred CCCCHH-------H-----HHHHHHHHHHHHhhcCCCeEEEEEecCCc---HHHHhhcCeEEEeeCCe
Q 044030 205 SGLDSA-------A-----SYYVMSRIAKLGQRDGIGRTIIASIHQPS---SEVFQLFHNLCLLSAGQ 257 (449)
Q Consensus 205 sgLD~~-------~-----~~~i~~~l~~l~~~~g~g~tii~~tH~~~---~~i~~~~D~v~~l~~G~ 257 (449)
+++|+. . ...+++.|++++++.|. |||+++|... ..+...+|++++|++|+
T Consensus 136 ~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~--tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 136 SHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDI--AVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTC--EEEEEEECC---------CCSEEEEEEECT
T ss_pred HHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCC--eEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 999984 2 23788888888877666 9999999532 23788999999998753
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-20 Score=209.34 Aligned_cols=156 Identities=17% Similarity=0.162 Sum_probs=105.4
Q ss_pred ccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHH
Q 044030 55 SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKE 134 (449)
Q Consensus 55 ~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e 134 (449)
++.|++||||++++|++++|+||||||||||||+|++..... ..|. .... ..+.++.-+.++..
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a--q~g~------~vpa---~~~~i~~~d~i~~~----- 722 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA--QIGS------YVPA---EEATIGIVDGIFTR----- 722 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH--HHTC------CBSS---SEEEEECCSEEEEE-----
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh--hcCc------cccc---hhhhhhHHHHHHHh-----
Confidence 567999999999999999999999999999999998753110 0110 0000 00111111111111
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHH
Q 044030 135 AVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYY 214 (449)
Q Consensus 135 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~ 214 (449)
+|+.+........+|+||+|++.|+++ +.+|+++||||||+|||+.....
T Consensus 723 -----------------------------ig~~d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~ 772 (918)
T 3thx_B 723 -----------------------------MGAADNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIA 772 (918)
T ss_dssp -----------------------------C----------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHH
T ss_pred -----------------------------CChHHHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHH
Confidence 222233334457789999999999998 89999999999999999999999
Q ss_pred HH-HHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEE-eeCCeEEE
Q 044030 215 VM-SRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCL-LSAGQTVY 260 (449)
Q Consensus 215 i~-~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~-l~~G~iv~ 260 (449)
+. .+++.++++.|. |||++||++ ++..++|+.-- +.++++.+
T Consensus 773 i~~~il~~L~~~~g~--tvl~vTH~~--el~~l~~~~~~~v~n~~~~~ 816 (918)
T 3thx_B 773 IAYATLEYFIRDVKS--LTLFVTHYP--PVCELEKNYSHQVGNYHMGF 816 (918)
T ss_dssp HHHHHHHHHHHTTCC--EEEEECSCG--GGGGHHHHTTTTEEEEEEEE
T ss_pred HHHHHHHHHHHhcCC--eEEEEeCcH--HHHHHHhhcccceEEEEEEE
Confidence 87 778888754555 999999995 46677776532 34455544
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-22 Score=189.67 Aligned_cols=147 Identities=18% Similarity=0.161 Sum_probs=117.7
Q ss_pred EecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCC--CCCCHHHHHHHHHhcc
Q 044030 66 AKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLI--TTLTVKEAVYYSAQLQ 143 (449)
Q Consensus 66 i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~--~~lTv~e~l~~~~~~~ 143 (449)
.++|+++||+||||||||||+++|+|++.+ .++|++|++.++ +.+|+.++..+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~--------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~-- 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE--------------------RVALLPMDHYYKDLGHLPLEERLRVNYD-- 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG--------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT--
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC--------------------CeEEEecCccccCcccccHHHhcCCCCC--
Confidence 578999999999999999999999997632 378999998776 56899988654321
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHH----HHHHHHHHHHhCCCEEEEeCCCCC-------CCHHHH
Q 044030 144 LPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQK----RRVSISIEILTRPKLLFLDEPTSG-------LDSAAS 212 (449)
Q Consensus 144 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGer----qRv~ia~aL~~~P~llllDEPtsg-------LD~~~~ 212 (449)
.+.....+++.+.++.+++.+..+.++..+|+||+ ||+++|++++.+|+++++||||++ ||+...
T Consensus 61 ----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~ 136 (211)
T 3asz_A 61 ----HPDAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADAD 136 (211)
T ss_dssp ----SGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHH
T ss_pred ----ChhhhhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHH
Confidence 11122234567788888888777888899999974 788999999999999999999999 999999
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEEecCCc
Q 044030 213 YYVMSRIAKLGQRDGIGRTIIASIHQPS 240 (449)
Q Consensus 213 ~~i~~~l~~l~~~~g~g~tii~~tH~~~ 240 (449)
..+.+.+++..++.|. |++.++|+..
T Consensus 137 ~~~~r~l~r~~~~~g~--t~~~~~~~~~ 162 (211)
T 3asz_A 137 ERFIRRLKRDVLERGR--SLEGVVAQYL 162 (211)
T ss_dssp HHHHHHHHHHHHHSCC--CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC--CHHHHHHHHH
Confidence 9999999886544555 9999999843
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.79 E-value=2e-19 Score=159.63 Aligned_cols=84 Identities=20% Similarity=0.305 Sum_probs=74.4
Q ss_pred hCccCCCCChHHHHHHHHH------HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHH
Q 044030 170 MNTRIRRLSGGQKRRVSIS------IEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEV 243 (449)
Q Consensus 170 ~~~~~~~LSgGerqRv~ia------~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i 243 (449)
.++++..||||||||++|| ++|+.+|+++||||||+|||+.++..+.+.|++++++ |. |||++||++ ++
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~--tiiivsH~~--~~ 125 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IP--QVILVSHDE--EL 125 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGG-SS--EEEEEESCG--GG
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHcc-CC--EEEEEEChH--HH
Confidence 5778899999999999886 8999999999999999999999999999999998744 44 999999996 46
Q ss_pred HhhcCeEEEe--eCCeE
Q 044030 244 FQLFHNLCLL--SAGQT 258 (449)
Q Consensus 244 ~~~~D~v~~l--~~G~i 258 (449)
...||++++| .+|..
T Consensus 126 ~~~~d~ii~l~~~~g~s 142 (148)
T 1f2t_B 126 KDAADHVIRISLENGSS 142 (148)
T ss_dssp GGGCSEEEEEEEETTEE
T ss_pred HHhCCEEEEEEcCCCeE
Confidence 7899999999 45643
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-20 Score=181.96 Aligned_cols=133 Identities=17% Similarity=0.341 Sum_probs=98.0
Q ss_pred ceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHHH
Q 044030 57 SILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAV 136 (449)
Q Consensus 57 ~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l 136 (449)
.+|+++| +++|++++|+||||||||||+++|+|+++|. .+|+|.++|.+.. |++|+..-+
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~-------~~~~~~~~~--------- 74 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIE-------YVFKHKKSI--------- 74 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCC-------SCCCCSSSE---------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcce-------eecCCccee---------
Confidence 4899999 9999999999999999999999999998652 2799999887643 333321100
Q ss_pred HHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHH
Q 044030 137 YYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVM 216 (449)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~ 216 (449)
. .. ..+|++. ..+ |++||++|..+|+++++|||| |+.+...++
T Consensus 75 -----v------~q-----------~~~gl~~------~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~~l 117 (261)
T 2eyu_A 75 -----V------NQ-----------REVGEDT------KSF------ADALRAALREDPDVIFVGEMR---DLETVETAL 117 (261)
T ss_dssp -----E------EE-----------EEBTTTB------SCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHHHH
T ss_pred -----e------eH-----------HHhCCCH------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHH
Confidence 0 00 0123321 122 899999999999999999999 988866543
Q ss_pred HHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeC
Q 044030 217 SRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSA 255 (449)
Q Consensus 217 ~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~ 255 (449)
+. + ..|. +|++++|+.. +...+|+++.|..
T Consensus 118 ---~~-~-~~g~--~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 118 ---RA-A-ETGH--LVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp ---HH-H-HTTC--EEEEEECCSS--HHHHHHHHHHTSC
T ss_pred ---HH-H-ccCC--EEEEEeCcch--HHHHHHHHhhhcC
Confidence 33 3 2344 9999999964 6788999988864
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1e-21 Score=194.26 Aligned_cols=163 Identities=15% Similarity=0.152 Sum_probs=89.8
Q ss_pred EeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcC-CCCCCCceeEEEECCEeccc--ccCcE
Q 044030 41 KDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGR-LGSDTRQTGKILINGHKKAL--AYGTS 117 (449)
Q Consensus 41 ~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~-~~~~~~~~G~I~~~g~~~~~--~~~~i 117 (449)
.||++.| +++.++++++|.| +|+||||||||||+++|+|. ..+ .+| |.++|.+... ..+.+
T Consensus 2 ~~l~~~~------~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~---~~g-i~~~g~~~~~t~~~~~~ 65 (301)
T 2qnr_A 2 SNLPNQV------HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYP---ERV-ISGAAEKIERTVQIEAS 65 (301)
T ss_dssp ----------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------C
T ss_pred CCCcceE------CCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccC---CCC-cccCCcccCCcceEeeE
Confidence 3566662 5678999999998 99999999999999999997 554 378 8888765421 22457
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCE
Q 044030 118 AYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKL 197 (449)
Q Consensus 118 ~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~l 197 (449)
+|++|++.....+|++|+..++..... .+..+..++. +.+..+.+++++|||||||+.+|++++ +
T Consensus 66 ~~~~q~~~~~~~ltv~Dt~g~~~~~~~-----~e~~~~l~~~------l~~~~~~~~~~~sgg~rqrv~~ara~~----l 130 (301)
T 2qnr_A 66 TVEIEERGVKLRLTVVDTPGYGDAINC-----RDCFKTIISY------IDEQFERYLHDESGLNRRHIIDNRVHC----C 130 (301)
T ss_dssp EEEEC---CCEEEEEEEEC----------------CTTHHHH------HHHHHHHHHHHHTSSCCTTCCCCCCCE----E
T ss_pred EEEecCCCcccCcchhhhhhhhhhcCc-----HHHHHHHHHH------HHHHHHHHHHHhCHHhhhhhhhhhhhh----e
Confidence 899999888888999999877543210 0000111111 223456778999999999999988875 9
Q ss_pred EEEeCCCC-CCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCc
Q 044030 198 LFLDEPTS-GLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPS 240 (449)
Q Consensus 198 lllDEPts-gLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~ 240 (449)
+++||||+ |||+... +.++++.++. +.++|++.||..
T Consensus 131 l~ldePt~~~Ld~~~~----~~l~~l~~~~--~iilV~~K~Dl~ 168 (301)
T 2qnr_A 131 FYFISPFGHGLKPLDV----AFMKAIHNKV--NIVPVIAKADTL 168 (301)
T ss_dssp EEEECSSSSSCCHHHH----HHHHHHTTTS--CEEEEECCGGGS
T ss_pred eeeecCcccCCCHHHH----HHHHHHHhcC--CEEEEEEeCCCC
Confidence 99999998 5999873 5666665433 459999999964
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.6e-19 Score=198.39 Aligned_cols=146 Identities=21% Similarity=0.154 Sum_probs=105.0
Q ss_pred ccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCC-CCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHH
Q 044030 55 SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLG-SDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVK 133 (449)
Q Consensus 55 ~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~-~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~ 133 (449)
++.+++|+||+ |++++|+||||||||||||+|+|+.. + ..|.+. + .....+++++| +++.+++.
T Consensus 565 ~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~---~~G~~v----p--a~~~~i~~v~~---i~~~~~~~ 629 (765)
T 1ewq_A 565 TEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLA---QVGSFV----P--AEEAHLPLFDG---IYTRIGAS 629 (765)
T ss_dssp SCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHH---TTTCCB----S--SSEEEECCCSE---EEEECCC-
T ss_pred CceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhc---ccCcee----e--hhccceeeHHH---hhccCCHH
Confidence 46799999999 99999999999999999999999763 2 245432 1 11234677766 55666666
Q ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHH--HhCCCEEEEeCC---CCCCC
Q 044030 134 EAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEI--LTRPKLLFLDEP---TSGLD 208 (449)
Q Consensus 134 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL--~~~P~llllDEP---tsgLD 208 (449)
|++. .++|+|+++++.+++++ +.+|+++||||| |++||
T Consensus 630 d~l~-------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD 672 (765)
T 1ewq_A 630 DDLA-------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLD 672 (765)
T ss_dssp ------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHH
T ss_pred HHHH-------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcC
Confidence 6542 14689999999999999 999999999999 99999
Q ss_pred HHHH-HHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 209 SAAS-YYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 209 ~~~~-~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
+.+. ..+++.|.+ .|. |+|++||+. +...++ .-.+.++++....
T Consensus 673 ~~~~~~~i~~~L~~----~g~--~vl~~TH~~--~l~~~~--~~~v~n~~~~~~~ 717 (765)
T 1ewq_A 673 GVAIATAVAEALHE----RRA--YTLFATHYF--ELTALG--LPRLKNLHVAARE 717 (765)
T ss_dssp HHHHHHHHHHHHHH----HTC--EEEEECCCH--HHHTCC--CTTEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHh----CCC--EEEEEeCCH--HHHHhh--hhcceEEEEEEEE
Confidence 9875 567777765 244 999999994 455555 2223445554443
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.76 E-value=3.3e-18 Score=177.00 Aligned_cols=76 Identities=18% Similarity=0.237 Sum_probs=67.7
Q ss_pred CCCCChHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCe
Q 044030 174 IRRLSGGQKRRVSISIEIL----TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHN 249 (449)
Q Consensus 174 ~~~LSgGerqRv~ia~aL~----~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~ 249 (449)
+..||||||||++||++|+ .+|+++||||||++||+..+..+.+.|+++.++ + .++|++||++ .....||+
T Consensus 331 ~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~-~--~~~ii~th~~--~~~~~~d~ 405 (430)
T 1w1w_A 331 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNP-D--LQFIVISLKN--TMFEKSDA 405 (430)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBT-T--BEEEEECSCH--HHHTTCSE
T ss_pred cccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcC-C--CEEEEEECCH--HHHHhCCE
Confidence 3469999999999999999 579999999999999999999999999998643 3 4999999994 56788999
Q ss_pred EEEee
Q 044030 250 LCLLS 254 (449)
Q Consensus 250 v~~l~ 254 (449)
++.+.
T Consensus 406 ~~~~~ 410 (430)
T 1w1w_A 406 LVGVY 410 (430)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99986
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-19 Score=199.70 Aligned_cols=160 Identities=14% Similarity=0.064 Sum_probs=110.0
Q ss_pred cccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHH
Q 044030 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVK 133 (449)
Q Consensus 54 ~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~ 133 (449)
+++.+++|+|++ ++|++++|+||||||||||||+|+|+.... ..| .........+++++| +++.+++.
T Consensus 593 ~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~--q~G------~~vpa~~~~i~~~~~---i~~~~~~~ 660 (800)
T 1wb9_A 593 NEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA--YIG------SYVPAQKVEIGPIDR---IFTRVGAA 660 (800)
T ss_dssp SSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH--TTT------CCBSSSEEEECCCCE---EEEEEC--
T ss_pred CCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH--hcC------cccchhcccceeHHH---HHhhCCHH
Confidence 346799999999 999999999999999999999999974221 112 111111123455544 45556666
Q ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Q 044030 134 EAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASY 213 (449)
Q Consensus 134 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~ 213 (449)
|++..+ ...+|+|++ +++.+...+.+|+++|||||++|+|+....
T Consensus 661 d~l~~~----------------------------------~stf~~e~~-~~~~il~~a~~psLlLLDEp~~Gtd~~d~~ 705 (800)
T 1wb9_A 661 DDLASG----------------------------------RSTFMVEMT-ETANILHNATEYSLVLMDEIGRGTSTYDGL 705 (800)
T ss_dssp -------------------------------------------CHHHHH-HHHHHHHHCCTTEEEEEESCCCCSSSSHHH
T ss_pred HHHHhh----------------------------------hhhhhHHHH-HHHHHHHhccCCCEEEEECCCCCCChhHHH
Confidence 655321 123466665 455555678999999999999999998877
Q ss_pred HH-HHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecCh
Q 044030 214 YV-MSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264 (449)
Q Consensus 214 ~i-~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~ 264 (449)
.+ +.+++.++++.|. ++|++||++ ++..+||++..+.+|++.+....
T Consensus 706 ~i~~~ll~~l~~~~g~--~vl~~TH~~--el~~l~d~~~~v~n~~~~~~~~~ 753 (800)
T 1wb9_A 706 SLAWACAENLANKIKA--LTLFATHYF--ELTQLPEKMEGVANVHLDALEHG 753 (800)
T ss_dssp HHHHHHHHHHHHTTCC--EEEEECSCG--GGGGHHHHSTTEEEEEEEEEEET
T ss_pred HHHHHHHHHHHhccCC--eEEEEeCCH--HHHHHhhhhhceEEEEEEEEEcC
Confidence 75 7888888754455 999999996 35678999888888888766543
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.6e-20 Score=187.86 Aligned_cols=168 Identities=20% Similarity=0.200 Sum_probs=107.2
Q ss_pred ceeeee-eEEEecCeEEEEECCCCCcHHHHHHHHHcCC--CCCC-CceeE-EEECCEecccccCcEEEEcCCCCCCCCCC
Q 044030 57 SILEDL-TGYAKPGHLLAIMGPSGSGKTTLLDALAGRL--GSDT-RQTGK-ILINGHKKALAYGTSAYVTQDDTLITTLT 131 (449)
Q Consensus 57 ~iL~~v-s~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~--~~~~-~~~G~-I~~~g~~~~~~~~~i~yv~Q~~~l~~~lT 131 (449)
..|+++ ++.+++|++++|+||||||||||++.|++.. +|.. ...|. |++++.+.. ..+++++++|...+++. +
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~-~~~~i~~i~q~~~~~~~-~ 195 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF-RPERIREIAQNRGLDPD-E 195 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC-CHHHHHHHHHTTTCCHH-H
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC-CHHHHHHHHHHcCCCHH-H
Confidence 456665 6899999999999999999999999999987 3320 00267 888886431 12345666666555443 4
Q ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHH-------hCCCEEEEeCCC
Q 044030 132 VKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEIL-------TRPKLLFLDEPT 204 (449)
Q Consensus 132 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~-------~~P~llllDEPt 204 (449)
+.+|+.+... . -|.+++|++.++++++ .+|+++++||||
T Consensus 196 v~~ni~~~~~------~----------------------------~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~t 241 (349)
T 1pzn_A 196 VLKHIYVARA------F----------------------------NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 241 (349)
T ss_dssp HGGGEEEEEC------C----------------------------SHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSS
T ss_pred HhhCEEEEec------C----------------------------ChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCch
Confidence 4444432110 0 1355666666666666 689999999999
Q ss_pred CCCCHHH------------HHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 205 SGLDSAA------------SYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 205 sgLD~~~------------~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
+++|+.. ...++..|++++++.|. |||+++|... .....++.......|+++.++.
T Consensus 242 a~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~--tvii~~h~~~-~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 242 SHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDI--AVFVTNQVQA-RPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp TTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTC--EEEEEEECC----------------CCCCCTTC
T ss_pred HhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCc--EEEEEccccc-ccccccCCccccCCcceEeecC
Confidence 9999852 46777888888877766 9999999853 4544555566666777665544
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.5e-20 Score=185.96 Aligned_cols=147 Identities=15% Similarity=0.130 Sum_probs=107.5
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----------ccCcEEEEcCCCCCCCCCCHHHHH
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-----------AYGTSAYVTQDDTLITTLTVKEAV 136 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-----------~~~~i~yv~Q~~~l~~~lTv~e~l 136 (449)
+|++++|+||||||||||+++|+|+++|. +|+|.++|.+... ....++|++|+..++|.+|+++++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~---~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL---GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT---TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 79999999999999999999999999774 8999999986421 013589999999999999999999
Q ss_pred HHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHH
Q 044030 137 YYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVM 216 (449)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~ 216 (449)
.++.... .. ..+++..|+.+..+.. ++..++||++||||++.+|+.++| .||+.+...++
T Consensus 178 ~~~~~~~----~d--------~~llDt~G~~~~~~~~---~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~ 237 (304)
T 1rj9_A 178 QAMKARG----YD--------LLFVDTAGRLHTKHNL---MEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGL 237 (304)
T ss_dssp HHHHHHT----CS--------EEEECCCCCCTTCHHH---HHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHH
T ss_pred HHHHhCC----CC--------EEEecCCCCCCchHHH---HHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHH
Confidence 8753211 00 0122334443333333 344558999999999999994444 45555555677
Q ss_pred HHHHHHHhhcCCCeEEEEEecCC
Q 044030 217 SRIAKLGQRDGIGRTIIASIHQP 239 (449)
Q Consensus 217 ~~l~~l~~~~g~g~tii~~tH~~ 239 (449)
+.++.+.+..|. |+|++||+.
T Consensus 238 ~~~~~~~~~~~~--t~iivTh~d 258 (304)
T 1rj9_A 238 EQAKKFHEAVGL--TGVIVTKLD 258 (304)
T ss_dssp HHHHHHHHHHCC--SEEEEECTT
T ss_pred HHHHHHHHHcCC--cEEEEECCc
Confidence 777777755565 999999984
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.2e-18 Score=190.38 Aligned_cols=109 Identities=22% Similarity=0.402 Sum_probs=96.6
Q ss_pred HHHHHHHHHHcCCchh-hCccCCCCChHHHHHHHHHHHHHhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCe
Q 044030 154 KERAEVTIREMGLQDA-MNTRIRRLSGGQKRRVSISIEILTRP--KLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGR 230 (449)
Q Consensus 154 ~~~v~~~l~~lgL~~~-~~~~~~~LSgGerqRv~ia~aL~~~P--~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~ 230 (449)
.++++ .+..+||.+. +++.+.+|||||||||.||++|+.+| .+|+|||||+|||+.....++++|+++++ .|.
T Consensus 357 ~~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~-~G~-- 432 (842)
T 2vf7_A 357 VKRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKR-GGN-- 432 (842)
T ss_dssp HHHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHT-TTC--
T ss_pred HHHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHH-cCC--
Confidence 34554 5788999876 89999999999999999999999999 59999999999999999999999999974 455
Q ss_pred EEEEEecCCcHHHHhhcCeEEEe------eCCeEEEecChhhHH
Q 044030 231 TIIASIHQPSSEVFQLFHNLCLL------SAGQTVYFGPATAAN 268 (449)
Q Consensus 231 tii~~tH~~~~~i~~~~D~v~~l------~~G~iv~~g~~~~~~ 268 (449)
|||+++|++ + +...||+|++| ++|++++.|+++++.
T Consensus 433 TVIvVeHdl-~-~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~ 474 (842)
T 2vf7_A 433 SLFVVEHDL-D-VIRRADWLVDVGPEAGEKGGEILYSGPPEGLK 474 (842)
T ss_dssp EEEEECCCH-H-HHTTCSEEEEECSSSGGGCCSEEEEECGGGGG
T ss_pred EEEEEcCCH-H-HHHhCCEEEEeCCCcccCCCEEEEecCHHHHH
Confidence 999999996 3 56789999999 799999999987653
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.74 E-value=2e-19 Score=168.61 Aligned_cols=171 Identities=12% Similarity=0.069 Sum_probs=110.4
Q ss_pred ccceeeeeeE-EEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHH
Q 044030 55 SSSILEDLTG-YAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVK 133 (449)
Q Consensus 55 ~~~iL~~vs~-~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~ 133 (449)
+...|+++.+ .+++|++++|+||||||||||++.|++...+ ..|.|.+.+.+. +..
T Consensus 8 g~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~---~~~~v~~~~~~~--------------------~~~ 64 (235)
T 2w0m_A 8 GILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLR---DGDPCIYVTTEE--------------------SRD 64 (235)
T ss_dssp SCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHH---HTCCEEEEESSS--------------------CHH
T ss_pred CchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHH---CCCeEEEEEccc--------------------CHH
Confidence 3567889886 8999999999999999999999999987643 245555433211 111
Q ss_pred HHHHHHHhccCCCCCCHHHHH--HHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCC--EEEEeCCCCCC--
Q 044030 134 EAVYYSAQLQLPDTMPKSDKK--ERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPK--LLFLDEPTSGL-- 207 (449)
Q Consensus 134 e~l~~~~~~~~~~~~~~~~~~--~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~--llllDEPtsgL-- 207 (449)
+.......... ........ ..++.....++ .. ......|.++.++...+.+...+|+ ++++||||+++
T Consensus 65 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~ 138 (235)
T 2w0m_A 65 SIIRQAKQFNW--DFEEYIEKKLIIIDALMKEKE-DQ---WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLD 138 (235)
T ss_dssp HHHHHHHHTTC--CCGGGBTTTEEEEECCC-----CT---TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSS
T ss_pred HHHHHHHHhcc--hHHHHhhCCEEEEeccccccC-ce---eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcC
Confidence 11110000000 00000000 00000000001 00 1123459999998888888888999 99999999888
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCc-------HHHHhhcCeEEEeeCC
Q 044030 208 DSAASYYVMSRIAKLGQRDGIGRTIIASIHQPS-------SEVFQLFHNLCLLSAG 256 (449)
Q Consensus 208 D~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~-------~~i~~~~D~v~~l~~G 256 (449)
|+.....+++.|++++++.|. |||+++|+.. ..+.++||++++|+..
T Consensus 139 d~~~~~~~~~~l~~~~~~~~~--~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 139 KPAMARKISYYLKRVLNKWNF--TIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp CGGGHHHHHHHHHHHHHHTTE--EEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHhCCC--eEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 999999999999999876655 9999999962 3488899999999864
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.74 E-value=2.5e-18 Score=167.52 Aligned_cols=151 Identities=17% Similarity=0.220 Sum_probs=109.0
Q ss_pred EEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHHHHHHHhccC
Q 044030 65 YAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQL 144 (449)
Q Consensus 65 ~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~ 144 (449)
-+++|++++|+||||||||||++.|++... .|.++ .|.+.. ....+.|+..++... .+.+.+. .+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-----~g~~~-~g~~~~-~~~~v~~~~~e~~~~---~~~~r~~---~~g- 91 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-----GGPDL-LEVGEL-PTGPVIYLPAEDPPT---AIHHRLH---ALG- 91 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH-----TCCCT-TCCCCC-CCCCEEEEESSSCHH---HHHHHHH---HHH-
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-----cCCCc-CCCccC-CCccEEEEECCCCHH---HHHHHHH---HHH-
Confidence 488999999999999999999999998653 35553 344321 123577877654320 1111111 111
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCC--CCCHHH---HHHHHHHH
Q 044030 145 PDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTS--GLDSAA---SYYVMSRI 219 (449)
Q Consensus 145 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPts--gLD~~~---~~~i~~~l 219 (449)
..... ....++++.+++.+..+..+..||+||++++ ++++.+|+++++||||+ ++|... ...+++.|
T Consensus 92 -~~~~~----~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L 163 (279)
T 1nlf_A 92 -AHLSA----EERQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRM 163 (279)
T ss_dssp -TTSCH----HHHHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHH
T ss_pred -hhcCh----hhhhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHH
Confidence 01111 2356678888888888889999999998865 68889999999999999 999754 48899999
Q ss_pred HHHHhhcCCCeEEEEEecCC
Q 044030 220 AKLGQRDGIGRTIIASIHQP 239 (449)
Q Consensus 220 ~~l~~~~g~g~tii~~tH~~ 239 (449)
++++++.|. |||+++|+.
T Consensus 164 ~~l~~~~g~--tvi~i~H~~ 181 (279)
T 1nlf_A 164 EAIAADTGC--SIVFLHHAS 181 (279)
T ss_dssp HHHHHHHCC--EEEEEEEC-
T ss_pred HHHHHHcCC--EEEEEecCC
Confidence 999866666 999999995
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.71 E-value=2.6e-19 Score=192.90 Aligned_cols=191 Identities=16% Similarity=0.196 Sum_probs=115.3
Q ss_pred eEEEEeeEEEEeecCcccccceeeee----------eEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEEC
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDL----------TGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILIN 106 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~v----------s~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~ 106 (449)
.+.++||+..| .. ..+.+|+.+ +++++. +||+|||||||||||++|+|+..|. .+|.|+++
T Consensus 10 ~i~~~~l~~~~-~~---~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~--~sG~vt~~ 80 (608)
T 3szr_A 10 SVAENNLCSQY-EE---KVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPR--GSGIVTRC 80 (608)
T ss_dssp ----------C-HH---HHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC---------CCCS
T ss_pred hhhhhhhhHHH-HH---HHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCC--CCCeEEEc
Confidence 46788998873 11 112344433 355554 9999999999999999999997662 48999999
Q ss_pred CEecc--------cccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCC
Q 044030 107 GHKKA--------LAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLS 178 (449)
Q Consensus 107 g~~~~--------~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LS 178 (449)
|.++. ...+.++|++|+..+++.+||+|++.++........ .++ |
T Consensus 81 g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~----------------~~~-----------s 133 (608)
T 3szr_A 81 PLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEG----------------MGI-----------S 133 (608)
T ss_dssp CEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCSS----------------SCC-----------C
T ss_pred CEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCCc----------------ccc-----------c
Confidence 98731 113468999999999999999999987643210000 001 1
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCC------CCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCc------HHHHhh
Q 044030 179 GGQKRRVSISIEILTRPKLLFLDEP------TSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPS------SEVFQL 246 (449)
Q Consensus 179 gGerqRv~ia~aL~~~P~llllDEP------tsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~------~~i~~~ 246 (449)
++++.++.+....|+++++||| |+|||+..+..+.++++++.++.. +.++++++|+.. ..+...
T Consensus 134 ---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~-~iil~vvt~~~d~a~~~~l~la~~ 209 (608)
T 3szr_A 134 ---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQE-TISLVVVPSNVDIATTEALSMAQE 209 (608)
T ss_dssp ---SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSS-CCEEEEEESSSCTTTCHHHHHHHH
T ss_pred ---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCC-CCceEEEeccchhccHHHHHHHHH
Confidence 1112222333458999999999 999999999999999999753322 348999999964 112222
Q ss_pred c-----CeEEEeeCCeEEEecChhhH
Q 044030 247 F-----HNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 247 ~-----D~v~~l~~G~iv~~g~~~~~ 267 (449)
. ..|+++.++.++..|+.+++
T Consensus 210 v~~~g~rtI~VlTK~Dlv~~g~~~~~ 235 (608)
T 3szr_A 210 VDPEGDRTIGILTKPDLVDKGTEDKV 235 (608)
T ss_dssp HCSSCCSEEEEEECGGGSSSSSTTCC
T ss_pred HhhcCCceEEEecchhhcCcccHHHH
Confidence 2 45788899888877765443
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=6.7e-18 Score=170.50 Aligned_cols=127 Identities=20% Similarity=0.291 Sum_probs=88.6
Q ss_pred EEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc-cCcEEEEcCCCCCCCCCCHHHHHHHHHhcc
Q 044030 65 YAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA-YGTSAYVTQDDTLITTLTVKEAVYYSAQLQ 143 (449)
Q Consensus 65 ~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~-~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~ 143 (449)
...+|++++|+|||||||||||++|+|.+++. ..|.|...+.+.... ....++++|.......++..+
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~--~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~--------- 187 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT--KYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSE--------- 187 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH--CCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHH---------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC--CCcEEEEccCcHHhhhhccccceeeeeeccccCCHHH---------
Confidence 67899999999999999999999999998652 246665544433321 122345555432221111111
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 044030 144 LPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLG 223 (449)
Q Consensus 144 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~ 223 (449)
+||+||..+|++|++|||| |..+. +.+.+++
T Consensus 188 ------------------------------------------~La~aL~~~PdvillDEp~---d~e~~----~~~~~~~ 218 (356)
T 3jvv_A 188 ------------------------------------------ALRSALREDPDIILVGEMR---DLETI----RLALTAA 218 (356)
T ss_dssp ------------------------------------------HHHHHTTSCCSEEEESCCC---SHHHH----HHHHHHH
T ss_pred ------------------------------------------HHHHHhhhCcCEEecCCCC---CHHHH----HHHHHHH
Confidence 9999999999999999999 65554 4444445
Q ss_pred hhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCC
Q 044030 224 QRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAG 256 (449)
Q Consensus 224 ~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G 256 (449)
. .|. |||+++|+.+ .+ ..+||++.|..|
T Consensus 219 ~-~G~--~vl~t~H~~~-~~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 219 E-TGH--LVFGTLHTTS-AA-KTIDRVVDVFPA 246 (356)
T ss_dssp H-TTC--EEEEEESCSS-HH-HHHHHHHHTSCH
T ss_pred h-cCC--EEEEEEccCh-HH-HHHHHHhhhcCc
Confidence 3 455 9999999975 34 889999998654
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.68 E-value=5.2e-20 Score=169.97 Aligned_cols=156 Identities=14% Similarity=0.118 Sum_probs=103.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecc---cccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCC
Q 044030 69 GHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKA---LAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLP 145 (449)
Q Consensus 69 Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~---~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~ 145 (449)
|++++|+||||||||||+++|+|+++ . +| |.++|.... ...+.++|++|+. .... +++ +++..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~---~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~~---~~l---~~~~~- 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S---SG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGTR---GPL---SRVGL- 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H---TT-CCCEEEECCEEETTSSEEEEEEEET--TSCE---EEE---EECCC-
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c---CC-EEEcCEecchhHhhhceEEEEEEec--ccce---ehh---hcccc-
Confidence 78999999999999999999999885 3 68 988886542 1245789999975 1111 111 11110
Q ss_pred CCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHH-HHHH---HHHhCCCEEEEeC--CCCCCCHHHHHHHHHHH
Q 044030 146 DTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRV-SISI---EILTRPKLLFLDE--PTSGLDSAASYYVMSRI 219 (449)
Q Consensus 146 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv-~ia~---aL~~~P~llllDE--PtsgLD~~~~~~i~~~l 219 (449)
..+. ..-.....++...+|+|||+++ ++++ |++.+|+++|+|| |+..+|......+.+++
T Consensus 67 -~~~~-------------~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l 132 (189)
T 2i3b_A 67 -EPPP-------------GKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTL 132 (189)
T ss_dssp -CCCS-------------SSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHH
T ss_pred -cCCc-------------cccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHH
Confidence 0000 0001133455567999999988 4444 5789999999999 89999987655555554
Q ss_pred HHHHhhcCCCeEEEE----EecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 220 AKLGQRDGIGRTIIA----SIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 220 ~~l~~~~g~g~tii~----~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
+ .. . ++|+ ++|+.+ ..+.|+|..+.+|+++.-.
T Consensus 133 ~----~~-~--~~ilgti~vsh~~~---~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 133 S----TP-G--TIILGTIPVPKGKP---LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp H----CS-S--CCEEEECCCCCSSC---CTTHHHHHTTCCSEEEECC
T ss_pred h----CC-C--cEEEEEeecCCCCc---hHHHHHHeecCCcEEEEeC
Confidence 4 32 2 4443 338852 3567888888888887643
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-18 Score=161.56 Aligned_cols=177 Identities=13% Similarity=0.090 Sum_probs=101.6
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeccccc
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLG--SDTRQTGKILINGHKKALAY 114 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~--~~~~~~G~I~~~g~~~~~~~ 114 (449)
.|+++|+++.| + ..++++ +.+++|..++|+|+||||||||+|.|+|... ...++.|.+.+.+.-. ..
T Consensus 3 ~l~~~~~~~~~------~-~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~-~~- 71 (210)
T 1pui_A 3 NLNYQQTHFVM------S-APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFE-VA- 71 (210)
T ss_dssp --------CEE------E-ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEE-EE-
T ss_pred chhhhhhhhee------e-cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEE-ec-
Confidence 37899999983 2 257888 8899999999999999999999999999861 1012356654322100 00
Q ss_pred CcEEEEcCCCCCC----CCCC---HHHHHHHHHhc-cCC--------CCCCHHHHHHHHHHHHHHcCCchh-hCccCCCC
Q 044030 115 GTSAYVTQDDTLI----TTLT---VKEAVYYSAQL-QLP--------DTMPKSDKKERAEVTIREMGLQDA-MNTRIRRL 177 (449)
Q Consensus 115 ~~i~yv~Q~~~l~----~~lT---v~e~l~~~~~~-~~~--------~~~~~~~~~~~v~~~l~~lgL~~~-~~~~~~~L 177 (449)
...-++ +.+.+. +.-. .+..+...... ... ...........+.++++..++... ...++..+
T Consensus 72 ~~~~l~-Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~ 150 (210)
T 1pui_A 72 DGKRLV-DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKL 150 (210)
T ss_dssp TTEEEE-ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGS
T ss_pred CCEEEE-ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCC
Confidence 001111 111110 0000 11122111110 000 000011223345566777787654 36778899
Q ss_pred ChHHHHH-HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhh
Q 044030 178 SGGQKRR-VSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQR 225 (449)
Q Consensus 178 SgGerqR-v~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 225 (449)
|+||+|| +..+++++.+|+++++|||||++|......+++.|.++.++
T Consensus 151 s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 151 ASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp CHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred CchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 9999999 89999999999999999999999999999999999998744
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-18 Score=178.82 Aligned_cols=163 Identities=15% Similarity=0.174 Sum_probs=95.8
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCc
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGT 116 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~ 116 (449)
.|.++||++. + +.+.+++|+||+| +|+||||||||||+|+|+|...+.. ..|.+.+++.+ ......
T Consensus 11 ~l~~~~l~~~-y-----~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~-~~~~~~~~~~~-t~~~~~ 76 (418)
T 2qag_C 11 YVGFANLPNQ-V-----YRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSP-EYPGPSHRIKK-TVQVEQ 76 (418)
T ss_dssp ----CCCCCC-T-----TTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCC-CCCSCC------CCEEEE
T ss_pred cEEEEeccee-E-----CCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCC-CCCCcccCCcc-ceeeee
Confidence 5789999887 2 4578999999998 9999999999999999999876421 12222222211 111235
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCC
Q 044030 117 SAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPK 196 (449)
Q Consensus 117 i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~ 196 (449)
++|++|++.+++.+||+||+.++.... .......+.+.++ ..++.+++||++||++++.+|+
T Consensus 77 i~~v~q~~~~~~~Ltv~Dt~g~~~~~~------~~~~~~~i~~~i~------------~~~~~~l~qr~~IaRal~~d~~ 138 (418)
T 2qag_C 77 SKVLIKEGGVQLLLTIVDTPGFGDAVD------NSNCWQPVIDYID------------SKFEDYLNAESRVNRRQMPDNR 138 (418)
T ss_dssp EECC------CEEEEEEECC-----------------CHHHHHHHH------------HHHHHHTTTSCC-CCCCCCCC-
T ss_pred EEEEEecCCcccceeeeechhhhhhcc------chhhHHHHHHHHH------------HHHHHHHHHHHHHHHHhccCCC
Confidence 789999988888899999987764321 0111111222222 1345677889999999999999
Q ss_pred ---EEEEeCCC-CCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCC
Q 044030 197 ---LLFLDEPT-SGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQP 239 (449)
Q Consensus 197 ---llllDEPt-sgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~ 239 (449)
++++|||| .|||+... ++++.+. . +. +||+++|..
T Consensus 139 ~~vlL~ldePt~~~L~~~d~----~~lk~L~-~-~v--~iIlVinK~ 177 (418)
T 2qag_C 139 VQCCLYFIAPSGHGLKPLDI----EFMKRLH-E-KV--NIIPLIAKA 177 (418)
T ss_dssp CCEEEEECCC-CCSCCHHHH----HHHHHHT-T-TS--EEEEEEEST
T ss_pred eeEEEEEecCcccCCCHHHH----HHHHHHh-c-cC--cEEEEEEcc
Confidence 99999999 69998873 4455554 2 33 777777763
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1e-16 Score=149.30 Aligned_cols=156 Identities=17% Similarity=0.153 Sum_probs=103.3
Q ss_pred cceeeeee-EEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHH
Q 044030 56 SSILEDLT-GYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKE 134 (449)
Q Consensus 56 ~~iL~~vs-~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e 134 (449)
...|+++. +-+++|++++|+||||||||||++.|++ ..+ .+.+ |+..+..+ +...
T Consensus 6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~---~~v~---------------~i~~~~~~----~~~~ 61 (220)
T 2cvh_A 6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSG---KKVA---------------YVDTEGGF----SPER 61 (220)
T ss_dssp CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHC---SEEE---------------EEESSCCC----CHHH
T ss_pred cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcC---CcEE---------------EEECCCCC----CHHH
Confidence 45677776 4899999999999999999999999998 221 2222 33322211 1111
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHH--HHHHHHHHHHHhC-CCEEEEeCCCCCCCHH-
Q 044030 135 AVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQ--KRRVSISIEILTR-PKLLFLDEPTSGLDSA- 210 (449)
Q Consensus 135 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGe--rqRv~ia~aL~~~-P~llllDEPtsgLD~~- 210 (449)
-....... .... +++++.+ .+...|+++ ++++..+++++.+ |+++++||||+++|+.
T Consensus 62 ~~~~~~~~----~~~~-------~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~ 122 (220)
T 2cvh_A 62 LVQMAETR----GLNP-------EEALSRF--------ILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEE 122 (220)
T ss_dssp HHHHHHTT----TCCH-------HHHHHHE--------EEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGG
T ss_pred HHHHHHhc----CCCh-------HHHhhcE--------EEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcC
Confidence 11111111 1111 1122222 233445554 5688888899986 9999999999999973
Q ss_pred -------HHHHHHHHHHHHHhhcCCCeEEEEEecCCc------------HHHHhhcCeEEEeeCC
Q 044030 211 -------ASYYVMSRIAKLGQRDGIGRTIIASIHQPS------------SEVFQLFHNLCLLSAG 256 (449)
Q Consensus 211 -------~~~~i~~~l~~l~~~~g~g~tii~~tH~~~------------~~i~~~~D~v~~l~~G 256 (449)
....+++.|++++++.|. |||+++|... ..+...||.+++|+..
T Consensus 123 ~~~~~~~~~~~~~~~L~~l~~~~~~--~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 123 NRSGLIAELSRQLQVLLWIARKHNI--PVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp GSSTTHHHHHHHHHHHHHHHHHHTC--CEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred chHHHHHHHHHHHHHHHHHHHHcCC--EEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 335577778888877766 9999999854 1477899999999864
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=6.9e-18 Score=159.27 Aligned_cols=147 Identities=16% Similarity=0.158 Sum_probs=99.1
Q ss_pred EEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-ccCcEEEEcCCCCCCCCCCH----HHHHHH
Q 044030 64 GYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-AYGTSAYVTQDDTLITTLTV----KEAVYY 138 (449)
Q Consensus 64 ~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-~~~~i~yv~Q~~~l~~~lTv----~e~l~~ 138 (449)
-..++|++++|+||||||||||+++|+|+.+|+ ...|.|.+.+.+... ....++|+||++..|+.+++ .|++.+
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~-~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~ 89 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLY-DTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEV 89 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTT-TEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCC-ceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHH
Confidence 357899999999999999999999999998752 368999998875432 12458899998766665555 333322
Q ss_pred HHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 044030 139 SAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSR 218 (449)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~ 218 (449)
....+ +.+ ++. +.+++..++++||| ||+.++..+.+.
T Consensus 90 ~~~~y---g~~----~~~-------------------------------v~~~l~~G~illLD-----LD~~~~~~i~~~ 126 (219)
T 1s96_A 90 FGNYY---GTS----REA-------------------------------IEQVLATGVDVFLD-----IDWQGAQQIRQK 126 (219)
T ss_dssp TTEEE---EEE----HHH-------------------------------HHHHHTTTCEEEEE-----CCHHHHHHHHHH
T ss_pred HhccC---CCC----HHH-------------------------------HHHHHhcCCeEEEE-----ECHHHHHHHHHH
Confidence 11111 000 011 22334457999999 999999999998
Q ss_pred HHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHHHHH
Q 044030 219 IAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANEFF 271 (449)
Q Consensus 219 l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~~~f 271 (449)
+. + +.||++++|++. ++.+ |+ +..| .++++++...+
T Consensus 127 l~----~---~~tI~i~th~~~-~l~~---Rl--~~rG----~~~~e~i~~rl 162 (219)
T 1s96_A 127 MP----H---ARSIFILPPSKI-ELDR---RL--RGRG----QDSEEVIAKRM 162 (219)
T ss_dssp CT----T---CEEEEEECSSHH-HHHH---HH--HTTS----CSCHHHHHHHH
T ss_pred cc----C---CEEEEEECCCHH-HHHH---HH--HHcC----CCCHHHHHHHH
Confidence 76 2 459999999963 4443 43 6777 57777766544
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-20 Score=172.25 Aligned_cols=172 Identities=16% Similarity=0.155 Sum_probs=112.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCC
Q 044030 69 GHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTM 148 (449)
Q Consensus 69 Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~ 148 (449)
|++++|+||||||||||+++|++. .+|.+.++|.+.... ...++++|.....+.+++++++.+.+........
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~------~~g~~~i~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 74 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ------LDNSAYIEGDIINHM-VVGGYRPPWESDELLALTWKNITDLTVNFLLAQN 74 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH------SSSEEEEEHHHHHTT-CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc------cCCeEEEcccchhhh-hccccccCccchhHHHHHHHHHHHHHHHHHhcCC
Confidence 689999999999999999999982 268999998654221 2345677765444556888888765432110000
Q ss_pred CHHHHHHHHHHHHHHcCCchhhCccCCCC--ChHHHHHHHHHH------HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 044030 149 PKSDKKERAEVTIREMGLQDAMNTRIRRL--SGGQKRRVSISI------EILTRPKLLFLDEPTSGLDSAASYYVMSRIA 220 (449)
Q Consensus 149 ~~~~~~~~v~~~l~~lgL~~~~~~~~~~L--SgGerqRv~ia~------aL~~~P~llllDEPtsgLD~~~~~~i~~~l~ 220 (449)
..+++.+. .....+..+.+ |+|++|++.++. +++.+|+...+|+ +||+..... ++.+.
T Consensus 75 ---------~~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~ 140 (189)
T 2bdt_A 75 ---------DVVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFE 140 (189)
T ss_dssp ---------EEEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHH
T ss_pred ---------cEEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHh
Confidence 00011110 00001112234 888888888888 9999999888884 899988888 88888
Q ss_pred HHHhhcCCCeEEEEEecC-CcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 221 KLGQRDGIGRTIIASIHQ-PSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 221 ~l~~~~g~g~tii~~tH~-~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
.+. +.+. +||.++|. +. ++.++||+|+ ++|+++..|+++-+
T Consensus 141 ~~~-~~~~--~ii~tsh~~~~-~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 141 SKG-IDER--YFYNTSHLQPT-NLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp HTT-CCTT--SEEECSSSCGG-GHHHHHHHHH--HCGGGSCC------
T ss_pred hcC-CCcc--EEEeCCCCChh-hHHHHHHHHh--hCCcEEEeecCCch
Confidence 875 3444 99999998 74 6899999999 99999999988644
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.62 E-value=9.6e-16 Score=139.31 Aligned_cols=82 Identities=20% Similarity=0.217 Sum_probs=70.1
Q ss_pred hCccCCCCChHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHh
Q 044030 170 MNTRIRRLSGGQKRRVSISIEILT----RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQ 245 (449)
Q Consensus 170 ~~~~~~~LSgGerqRv~ia~aL~~----~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~ 245 (449)
.++.+..||||||||++||++|+. .|+++||||||+|||+.+...+.+.|+++++ +.++|++||+. .+..
T Consensus 58 ~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~----~~~~ivith~~--~~~~ 131 (173)
T 3kta_B 58 DVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK----ESQFIVITLRD--VMMA 131 (173)
T ss_dssp SCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT----TSEEEEECSCH--HHHT
T ss_pred cccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc----CCEEEEEEecH--HHHH
Confidence 345678999999999999999975 4699999999999999999999999999874 23899999994 5778
Q ss_pred hcCeEEEee--CCe
Q 044030 246 LFHNLCLLS--AGQ 257 (449)
Q Consensus 246 ~~D~v~~l~--~G~ 257 (449)
.||+++.+. +|.
T Consensus 132 ~ad~i~~v~~~~g~ 145 (173)
T 3kta_B 132 NADKIIGVSMRDGV 145 (173)
T ss_dssp TCSEEEEEEEETTE
T ss_pred hCCEEEEEEecCCE
Confidence 999998664 564
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.60 E-value=2.2e-18 Score=157.61 Aligned_cols=139 Identities=17% Similarity=0.090 Sum_probs=94.7
Q ss_pred EEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---ccCcEEEEcCCCCCCCCCCHHHHHHHHHh
Q 044030 65 YAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---AYGTSAYVTQDDTLITTLTVKEAVYYSAQ 141 (449)
Q Consensus 65 ~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~ 141 (449)
.+++|++++|+||||||||||+++|+|. + ..|.|.++|.+... ....++|++|+.. +.+||.+++.+.+.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~---~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~ 77 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--P---GVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAG 77 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--S---SSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--c---CCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHH
Confidence 4779999999999999999999999997 3 26999999875321 1223567777543 45688999876543
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHcCCchhh--CccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 044030 142 LQLPDTMPKSDKKERAEVTIREMGLQDAM--NTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRI 219 (449)
Q Consensus 142 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~--~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l 219 (449)
.....+.. ..++.++..+++.... +..+..+|+|++||+.++|++..+|+++ +|+.....+.+.+
T Consensus 78 ~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~ 144 (191)
T 1zp6_A 78 RYAKEGYF-----VILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQF 144 (191)
T ss_dssp HHHHTSCE-----EEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHT
T ss_pred HHhccCCe-----EEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHH
Confidence 21000000 0011111122333332 4456789999999999999999999876 6888888888877
Q ss_pred HHHH
Q 044030 220 AKLG 223 (449)
Q Consensus 220 ~~l~ 223 (449)
+.+.
T Consensus 145 ~~l~ 148 (191)
T 1zp6_A 145 ADLG 148 (191)
T ss_dssp TCCG
T ss_pred hccC
Confidence 7665
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.59 E-value=2.8e-18 Score=164.01 Aligned_cols=146 Identities=21% Similarity=0.253 Sum_probs=103.8
Q ss_pred cCeEEEEECCCCCcHHHHHHHHH---cCCCCCCCceeEEEECCEecccc-cCcEEEEcCCCCCCCCCCHHHHHHHHHhcc
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALA---GRLGSDTRQTGKILINGHKKALA-YGTSAYVTQDDTLITTLTVKEAVYYSAQLQ 143 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~---G~~~~~~~~~G~I~~~g~~~~~~-~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~ 143 (449)
++++++|+||||||||||+++|+ |+..+ .+|+|.++|.+.... ...+.+++|+..+++..++.+++.......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~---~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHL---SSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCE---EHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEe---cHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999 98765 478888876532111 123456678888888889999998754210
Q ss_pred CC-----CCCCHHHHHHHHHHHHH--HcC------------CchhhCccCCCCChHHHHHHHHHHHH-HhCCCEEEEe--
Q 044030 144 LP-----DTMPKSDKKERAEVTIR--EMG------------LQDAMNTRIRRLSGGQKRRVSISIEI-LTRPKLLFLD-- 201 (449)
Q Consensus 144 ~~-----~~~~~~~~~~~v~~~l~--~lg------------L~~~~~~~~~~LSgGerqRv~ia~aL-~~~P~llllD-- 201 (449)
.. .+.+... ..++.+.. .++ +....++++..||| |+ +++ +.+|++++||
T Consensus 103 ~~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~ 173 (246)
T 2bbw_A 103 RGQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDV 173 (246)
T ss_dssp TTSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTT
T ss_pred CCCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCcccccccc
Confidence 00 0111111 12222221 223 34556788899999 66 677 9999999999
Q ss_pred --CCCCCCCHHHHHHHHHHHHHHHhh
Q 044030 202 --EPTSGLDSAASYYVMSRIAKLGQR 225 (449)
Q Consensus 202 --EPtsgLD~~~~~~i~~~l~~l~~~ 225 (449)
|||+|||..+...+.+.|+.+.++
T Consensus 174 ~~EP~~~ld~~~~~~i~~~l~~~~~~ 199 (246)
T 2bbw_A 174 TGEPLVQQEDDKPEAVAARLRQYKDV 199 (246)
T ss_dssp TCCBCBCCGGGSHHHHHHHHHHHHHH
T ss_pred cccccccCCCCcHHHHHHHHHHHHHh
Confidence 999999999999999999998753
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=4.2e-19 Score=179.90 Aligned_cols=169 Identities=15% Similarity=0.069 Sum_probs=104.8
Q ss_pred eeeeeeEEEec--CeEEEEECCCCCcHHHHHHHHHcCCCCCCCce----eEEEECCEecccccCcEEEEcCCCCCCCCCC
Q 044030 58 ILEDLTGYAKP--GHLLAIMGPSGSGKTTLLDALAGRLGSDTRQT----GKILINGHKKALAYGTSAYVTQDDTLITTLT 131 (449)
Q Consensus 58 iL~~vs~~i~~--Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~----G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lT 131 (449)
+.+.|++.|.+ |+.++|+||||||||||+++|+|++++ .+ |+|.+++... ..+..++...
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~---~~~~e~G~i~i~~~~~-----------~~~~~~~~~~ 222 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNT---TSAWEYGREFVFEKLG-----------GDEQAMQYSD 222 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTC---EEECCTTHHHHHHSSS-----------SCTTSSCTTT
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCC---CcchhhHHHHHHhhcC-----------CCcccCChhH
Confidence 46779999999 999999999999999999999999876 36 6665532100 0000011112
Q ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHc--CCchhhCccCCCCChHHHHHHHHHHHHH-hCCCEEEEeC---CC-
Q 044030 132 VKEAVYYSAQLQLPDTMPKSDKKERAEVTIREM--GLQDAMNTRIRRLSGGQKRRVSISIEIL-TRPKLLFLDE---PT- 204 (449)
Q Consensus 132 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l--gL~~~~~~~~~~LSgGerqRv~ia~aL~-~~P~llllDE---Pt- 204 (449)
. +++.+...- .......+.+.+ +..+..++.+..+|+|+++|..+++++. .+|++++||| |+
T Consensus 223 ~-~~I~~~~q~----------~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~ 291 (365)
T 1lw7_A 223 Y-PQMALGHQR----------YIDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWV 291 (365)
T ss_dssp H-HHHHHHHHH----------HHHHHHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC--
T ss_pred H-HHHHHHHHH----------HHHHHHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcc
Confidence 2 333332110 000000000101 0112223334456777788888888775 5999999999 65
Q ss_pred -----CCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeC
Q 044030 205 -----SGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSA 255 (449)
Q Consensus 205 -----sgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~ 255 (449)
.++|+..+..+.+.|+++.++.|. +||+++|. . +..+++|.+.++++
T Consensus 292 ~~g~~~sld~~~r~~l~~~l~~l~~~~~~--~ililde~-~-~~~r~~~~i~~i~~ 343 (365)
T 1lw7_A 292 DDGLRSLGSQKQRQQFQQLLKKLLDKYKV--PYIEIESP-S-YLDRYNQVKAVIEK 343 (365)
T ss_dssp ---------CCSHHHHHHHHHHHHHGGGC--CCEEEECS-S-HHHHHHHHHHHHHH
T ss_pred cCCCcCCccHHHHHHHHHHHHHHHHHcCC--CEEEeCCC-C-HHHHHHHHHHHHHH
Confidence 589999999999999998755555 99999975 3 56778887776653
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=5.6e-16 Score=157.42 Aligned_cols=130 Identities=15% Similarity=0.298 Sum_probs=94.6
Q ss_pred eeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc-cCcEEEEcCCCCCCCCCCHHHHH
Q 044030 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA-YGTSAYVTQDDTLITTLTVKEAV 136 (449)
Q Consensus 58 iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~-~~~i~yv~Q~~~l~~~lTv~e~l 136 (449)
+|++++ +++|++++|+||||||||||+++|+|++++. .+|+|.+.|.+.... ...++||+|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~--~~g~I~~~e~~~e~~~~~~~~~v~Q~~------------ 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYVFKHKKSIVNQRE------------ 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH--SCCEEEEEESSCCSCCCCSSSEEEEEE------------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC--CCcEEEEecccHhhhhccCceEEEeee------------
Confidence 566665 7899999999999999999999999988652 169997776554322 23567777741
Q ss_pred HHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHH
Q 044030 137 YYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVM 216 (449)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~ 216 (449)
+|++ +..+ +.+|+.+|..+|+++++|||+ |+.+...
T Consensus 191 ---------------------------~g~~------~~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~~-- 226 (372)
T 2ewv_A 191 ---------------------------VGED------TKSF------ADALRAALREDPDVIFVGEMR---DLETVET-- 226 (372)
T ss_dssp ---------------------------BTTT------BSCS------HHHHHHHTTSCCSEEEESCCC---SHHHHHH--
T ss_pred ---------------------------cCCC------HHHH------HHHHHHHhhhCcCEEEECCCC---CHHHHHH--
Confidence 1111 1233 469999999999999999999 7665433
Q ss_pred HHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEee
Q 044030 217 SRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLS 254 (449)
Q Consensus 217 ~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~ 254 (449)
.++. + ..|. +|++++|+.+ +...+|+++.|.
T Consensus 227 -~l~~-~-~~g~--~vi~t~H~~~--~~~~~~rl~~l~ 257 (372)
T 2ewv_A 227 -ALRA-A-ETGH--LVFGTLHTNT--AIDTIHRIVDIF 257 (372)
T ss_dssp -HHHH-H-TTTC--EEEECCCCCS--HHHHHHHHHHTS
T ss_pred -HHHH-H-hcCC--EEEEEECcch--HHHHHHHHHHhc
Confidence 3443 3 3344 9999999953 788899987764
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.56 E-value=1.8e-15 Score=152.41 Aligned_cols=121 Identities=18% Similarity=0.130 Sum_probs=90.7
Q ss_pred eeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCC-CCCCceeEEEEC-CEecc-cccCcEEEEcCCCCCCCCCCHHH
Q 044030 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLG-SDTRQTGKILIN-GHKKA-LAYGTSAYVTQDDTLITTLTVKE 134 (449)
Q Consensus 58 iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~-~~~~~~G~I~~~-g~~~~-~~~~~i~yv~Q~~~l~~~lTv~e 134 (449)
-++++++. .+|++++|+||||||||||+|+|+|... + .+|+|.++ |.... .....++|++|+..+++.+||+|
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~---~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e 280 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEI---LTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVRE 280 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCC---CCC-------------CCCEEEECTTSCEEEECHHHHT
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhcccccc---ccCCccccCCCCccceEEEEEEEECCCCEecCcccHHH
Confidence 45666664 4899999999999999999999999987 6 48999987 65432 22356899999999999889988
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHH
Q 044030 135 AVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEI 191 (449)
Q Consensus 135 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL 191 (449)
+ . + ...+.++....+.++++.+|+.+..+..+.++| ||+||++||+++
T Consensus 281 ~---~--l---~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 281 F---G--L---WHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp C---C--C---CCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred h---h--h---cCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 4 1 1 134555566778889999999999999999999 999999999764
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.55 E-value=5.2e-15 Score=139.72 Aligned_cols=159 Identities=16% Similarity=0.236 Sum_probs=90.3
Q ss_pred eeeeee-EEEecCeEEEEECCCCCcHHHHHHHHHc--CCCCC--CCceeEEEECCEecccccCcEEEEcCCCCCCCCCCH
Q 044030 58 ILEDLT-GYAKPGHLLAIMGPSGSGKTTLLDALAG--RLGSD--TRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTV 132 (449)
Q Consensus 58 iL~~vs-~~i~~Ge~~~IlGpnGaGKSTLL~~l~G--~~~~~--~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv 132 (449)
.|+.+- +-+++|++++|+||||||||||++.|++ ..++. ....|.+++++... + ..
T Consensus 12 ~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~---------------~----~~ 72 (243)
T 1n0w_A 12 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGT---------------F----RP 72 (243)
T ss_dssp HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC---------------C----CH
T ss_pred HHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCC---------------c----CH
Confidence 344433 5799999999999999999999999999 44330 01245666655421 0 11
Q ss_pred HHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHH-HHHHHHHH--hCCCEEEEeCCCCCCCH
Q 044030 133 KEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRR-VSISIEIL--TRPKLLFLDEPTSGLDS 209 (449)
Q Consensus 133 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR-v~ia~aL~--~~P~llllDEPtsgLD~ 209 (449)
.+.......+ +.... ++++.+.+ ....+..+... +.-+.+++ .+|+++++|||++.+|+
T Consensus 73 ~~~~~~~~~~----g~~~~-------~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 73 ERLLAVAERY----GLSGS-------DVLDNVAY-------ARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp HHHHHHHHHT----TCCHH-------HHHHTEEE-------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred HHHHHHHHHc----CCCHH-------HHhhCeEE-------EecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHH
Confidence 1111111111 11111 11121111 12244444332 22233333 58999999999999998
Q ss_pred H-------H-----HHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHH-------------------hhcCeEEEeeCC
Q 044030 210 A-------A-----SYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVF-------------------QLFHNLCLLSAG 256 (449)
Q Consensus 210 ~-------~-----~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~-------------------~~~D~v~~l~~G 256 (449)
. . ...++..|++++++.|. |||+++|... +.. .+||.+++|+.|
T Consensus 135 ~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~--tvi~~~h~~~-~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 135 DYSGRGELSARQMHLARFLRMLLRLADEFGV--AVVITNQVVA-QVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHCC--EEEEEC--------------------------CCTTCEEEEEEEC
T ss_pred HhcCCccHHHHHHHHHHHHHHHHHHHHHcCC--EEEEEeeeee-cCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 5 3 45677778888777666 9999999743 222 279999999865
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.2e-15 Score=154.52 Aligned_cols=136 Identities=19% Similarity=0.156 Sum_probs=99.7
Q ss_pred eeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec-cc--ccCcEEEEc-CCCCCCCCCCHHH
Q 044030 59 LEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKK-AL--AYGTSAYVT-QDDTLITTLTVKE 134 (449)
Q Consensus 59 L~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~-~~--~~~~i~yv~-Q~~~l~~~lTv~e 134 (449)
++++|+.+++|++++|+||||||||||+++|+|+++|. +|.|.++|... .. ..+.++|++ |++.+-
T Consensus 165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~---~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~------- 234 (361)
T 2gza_A 165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD---QRLITIEDVPELFLPDHPNHVHLFYPSEAKEE------- 234 (361)
T ss_dssp HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT---SCEEEEESSSCCCCTTCSSEEEEECC-------------
T ss_pred HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC---ceEEEECCccccCccccCCEEEEeecCccccc-------
Confidence 49999999999999999999999999999999999774 89999998531 11 234688888 554320
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHH
Q 044030 135 AVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYY 214 (449)
Q Consensus 135 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~ 214 (449)
++++...|..|+.++..+|+.+++|||.. ..
T Consensus 235 ------------------------------------------~~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~ 265 (361)
T 2gza_A 235 ------------------------------------------ENAPVTAATLLRSCLRMKPTRILLAELRG-------GE 265 (361)
T ss_dssp ----------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS-------TH
T ss_pred ------------------------------------------cccccCHHHHHHHHHhcCCCEEEEcCchH-------HH
Confidence 02222355666677777899999999986 34
Q ss_pred HHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeE
Q 044030 215 VMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQT 258 (449)
Q Consensus 215 i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~i 258 (449)
+.+.|+.+. ... .|++.++|..+ ....+||+..+..|..
T Consensus 266 ~~~~l~~l~-~g~--~~~l~t~H~~~--~~~~~~Rl~~l~~~~~ 304 (361)
T 2gza_A 266 AYDFINVAA-SGH--GGSITSCHAGS--CELTFERLALMVLQNR 304 (361)
T ss_dssp HHHHHHHHH-TTC--CSCEEEEECSS--HHHHHHHHHHHHTTST
T ss_pred HHHHHHHHh-cCC--CeEEEEECCCC--HHHHHHHHHHHHhccc
Confidence 566777775 322 37899999953 6888999999987743
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=7.8e-16 Score=158.11 Aligned_cols=180 Identities=16% Similarity=0.179 Sum_probs=113.6
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeE--EEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccccc
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHL--LAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAY 114 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~--~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~ 114 (449)
.+++++ ++. + ++.+ |+++|+++++|++ ++|+||||||||||+|+|+|..- .|.-.. ........
T Consensus 16 ~l~~~~-~~~-y-----~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l-----~g~~~~-~~~~~~~~ 81 (427)
T 2qag_B 16 TVPLAG-HVG-F-----DSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF-----EGEPAT-HTQPGVQL 81 (427)
T ss_dssp -CCCCC-CC--C-----C--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------------CCSSCEE
T ss_pred eEEEee-EEE-E-----CCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc-----cCCcCC-CCCccceE
Confidence 345555 544 1 3455 9999999999999 99999999999999999999741 222111 00111112
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCC-CH---HHHHHHHHHHHHHc-CCc----hhhCccC-----------
Q 044030 115 GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTM-PK---SDKKERAEVTIREM-GLQ----DAMNTRI----------- 174 (449)
Q Consensus 115 ~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~-~~---~~~~~~v~~~l~~l-gL~----~~~~~~~----------- 174 (449)
+.++|++|++.+++.+||.||+.|+.... ... .. ........+.+... ++. ...|.++
T Consensus 82 ~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~--~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~ 159 (427)
T 2qag_B 82 QSNTYDLQESNVRLKLTIVSTVGFGDQIN--KEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTG 159 (427)
T ss_dssp EEEEEEEEC--CEEEEEEEEEECCCC-CC--HHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC
T ss_pred eeEEEEeecCccccccchhhhhhhhhccc--cchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCC
Confidence 46899999999888999999986653210 000 00 01233455556654 443 1223331
Q ss_pred CCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHhhcCCCeEEEEEecC
Q 044030 175 RRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAK-LGQRDGIGRTIIASIHQ 238 (449)
Q Consensus 175 ~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~-l~~~~g~g~tii~~tH~ 238 (449)
.+|+-.+ +.|+++|..+++++++|||+..|.+.....+.+.+++ +. ..|. +|+.++.+
T Consensus 160 ~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~-~~gi--~I~~is~~ 218 (427)
T 2qag_B 160 HSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELV-SNGV--QIYQFPTD 218 (427)
T ss_dssp ---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHB-TTBC--CCCCCC--
T ss_pred CCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHH-HcCC--cEEecCCC
Confidence 3566666 7899999999999999999999999999999999987 65 4555 88888765
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=9.6e-19 Score=174.16 Aligned_cols=162 Identities=14% Similarity=0.096 Sum_probs=101.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCC-----CCceeEEEECCEecccc--------------------cCcEEEE---c
Q 044030 70 HLLAIMGPSGSGKTTLLDALAGRLGSD-----TRQTGKILINGHKKALA--------------------YGTSAYV---T 121 (449)
Q Consensus 70 e~~~IlGpnGaGKSTLL~~l~G~~~~~-----~~~~G~I~~~g~~~~~~--------------------~~~i~yv---~ 121 (449)
++++|+|+||||||||||+|+|..... .+..|+|.++|.+.... .+.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 689999999999999999999986210 12489999999764321 0124555 5
Q ss_pred CCCCCCCCCCHHHHHHHHHhccCCCCC---CHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEE
Q 044030 122 QDDTLITTLTVKEAVYYSAQLQLPDTM---PKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLL 198 (449)
Q Consensus 122 Q~~~l~~~lTv~e~l~~~~~~~~~~~~---~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~ll 198 (449)
|+..++++.++.|+..++......... +......+++.++..+++.+..++.. ++|+||+||+..+++++.+|+++
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~-~ls~g~~Q~~~ad~ill~k~dl~ 163 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN-QFTIAQSQVGYADRILLTKTDVA 163 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH-HCHHHHHHHHTCSEEEEECTTTC
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh-hchHHHHHHHhCCEEEEECcccC
Confidence 665555566666665432100000000 00000001112233345545444443 79999999999888888999987
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcC
Q 044030 199 FLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFH 248 (449)
Q Consensus 199 llDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D 248 (449)
||| ..+.+.|++++ . +.+|++++|++. ++..++|
T Consensus 164 --de~---------~~l~~~l~~l~-~---~~~ii~~sh~~~-~~~~l~~ 197 (318)
T 1nij_A 164 --GEA---------EKLHERLARIN-A---RAPVYTVTHGDI-DLGLLFN 197 (318)
T ss_dssp --SCT---------HHHHHHHHHHC-S---SSCEEECCSSCC-CGGGGSC
T ss_pred --CHH---------HHHHHHHHHhC-C---CCeEEEecccCC-CHHHHhC
Confidence 998 67888888875 2 449999999864 3444444
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.52 E-value=2.6e-16 Score=163.84 Aligned_cols=153 Identities=14% Similarity=0.186 Sum_probs=103.6
Q ss_pred eeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----------ccCcEEEEcCCCCCC
Q 044030 59 LEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-----------AYGTSAYVTQDDTLI 127 (449)
Q Consensus 59 L~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-----------~~~~i~yv~Q~~~l~ 127 (449)
-+++||++++|++++|+||||||||||+++|+|++.+. +|+|.++|.+... .++.++|++|+..++
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 46899999999999999999999999999999998763 7999998755311 124589999998888
Q ss_pred CCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHH-hCC-CEEEEeCCCC
Q 044030 128 TTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEIL-TRP-KLLFLDEPTS 205 (449)
Q Consensus 128 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~-~~P-~llllDEPts 205 (449)
+.+||++++.++..-. .. . .+++..|..+.......+ .+|++.+++++. ..| .++|..+|++
T Consensus 360 p~~tV~e~l~~a~~~~----~D------v--VLIDTaGrl~~~~~lm~E----L~kiv~iar~l~~~~P~evLLvLDatt 423 (503)
T 2yhs_A 360 SASVIFDAIQAAKARN----ID------V--LIADTAGRLQNKSHLMEE----LKKIVRVMKKLDVEAPHEVMLTIDAST 423 (503)
T ss_dssp HHHHHHHHHHHHHHTT----CS------E--EEECCCCSCCCHHHHHHH----HHHHHHHHHTTCTTCSSEEEEEEEGGG
T ss_pred HHHHHHHHHHHHHhcC----CC------E--EEEeCCCccchhhhHHHH----HHHHHHHHHHhccCCCCeeEEEecCcc
Confidence 8899999998875321 00 0 011222221111111112 247788888663 457 4555555888
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecC
Q 044030 206 GLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQ 238 (449)
Q Consensus 206 gLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~ 238 (449)
|.|.. +.++.+.+..+. |.|++||-
T Consensus 424 Gq~al------~~ak~f~~~~~i--tgvIlTKL 448 (503)
T 2yhs_A 424 GQNAV------SQAKLFHEAVGL--TGITLTKL 448 (503)
T ss_dssp THHHH------HHHHHHHHHTCC--SEEEEECG
T ss_pred cHHHH------HHHHHHHhhcCC--CEEEEEcC
Confidence 86554 345555544555 99999994
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.51 E-value=2e-16 Score=141.80 Aligned_cols=80 Identities=18% Similarity=0.161 Sum_probs=66.3
Q ss_pred cccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHH
Q 044030 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVK 133 (449)
Q Consensus 54 ~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~ 133 (449)
+.+.+++++||++++|++++|+||||||||||+|+|+|.+ |. +|+|.++|.++...+....|++|+..++ .+||.
T Consensus 18 g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~---~G~V~~~g~~i~~~~~~~~~~~q~~~l~-~ltv~ 92 (158)
T 1htw_A 18 GKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GH---QGNVKSPTYTLVEEYNIAGKMIYHFDLY-RLADP 92 (158)
T ss_dssp HHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TC---CSCCCCCTTTCEEEEEETTEEEEEEECT-TCSCT
T ss_pred HHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CC---CCeEEECCEeeeeeccCCCcceeccccc-cCCcH
Confidence 4567999999999999999999999999999999999998 63 8999999976521111012799998888 89999
Q ss_pred HHHHH
Q 044030 134 EAVYY 138 (449)
Q Consensus 134 e~l~~ 138 (449)
|++.+
T Consensus 93 e~l~~ 97 (158)
T 1htw_A 93 EELEF 97 (158)
T ss_dssp THHHH
T ss_pred HHHHH
Confidence 99854
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.2e-15 Score=152.39 Aligned_cols=142 Identities=15% Similarity=0.115 Sum_probs=100.8
Q ss_pred EecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----------ccCcEEEEcCCCCCCCCCCHHH
Q 044030 66 AKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-----------AYGTSAYVTQDDTLITTLTVKE 134 (449)
Q Consensus 66 i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-----------~~~~i~yv~Q~~~l~~~lTv~e 134 (449)
.++|++++|+||||||||||+++|+|++++. +|+|.+.|.+... ....+.|++|...+.|.+||+|
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~---~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e 202 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNH---GFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYD 202 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhc---CCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHH
Confidence 3689999999999999999999999998764 8999999987421 0124669999999999999999
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHH
Q 044030 135 AVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYY 214 (449)
Q Consensus 135 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~ 214 (449)
++.++..... .. .+++..|+.+..+..+.+|| .+++++..++.+++||.++ | .+
T Consensus 203 ~l~~~~~~~~----d~--------vliDtaG~~~~~~~l~~eL~-------~i~ral~~de~llvLDa~t-~------~~ 256 (328)
T 3e70_C 203 AIQHAKARGI----DV--------VLIDTAGRSETNRNLMDEMK-------KIARVTKPNLVIFVGDALA-G------NA 256 (328)
T ss_dssp HHHHHHHHTC----SE--------EEEEECCSCCTTTCHHHHHH-------HHHHHHCCSEEEEEEEGGG-T------TH
T ss_pred HHHHHHhccc----hh--------hHHhhccchhHHHHHHHHHH-------HHHHHhcCCCCEEEEecHH-H------HH
Confidence 9987643210 00 01222344333333333444 3888888888888888544 3 45
Q ss_pred HHHHHHHHHhhcCCCeEEEEEecC
Q 044030 215 VMSRIAKLGQRDGIGRTIIASIHQ 238 (449)
Q Consensus 215 i~~~l~~l~~~~g~g~tii~~tH~ 238 (449)
+++.++.+.+..+. |+|++||.
T Consensus 257 ~~~~~~~~~~~~~i--t~iilTKl 278 (328)
T 3e70_C 257 IVEQARQFNEAVKI--DGIILTKL 278 (328)
T ss_dssp HHHHHHHHHHHSCC--CEEEEECG
T ss_pred HHHHHHHHHHhcCC--CEEEEeCc
Confidence 66677777766655 99999996
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=7e-16 Score=158.62 Aligned_cols=162 Identities=16% Similarity=0.127 Sum_probs=99.8
Q ss_pred eeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCC----------CCCCC
Q 044030 59 LEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQD----------DTLIT 128 (449)
Q Consensus 59 L~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~----------~~l~~ 128 (449)
-++++++++.|+.++|+|+|||||||||++|+|..+ .+.+.+.......++++.++ +.+..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~---------~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~ 217 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP---------KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIE 217 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC---------EECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc---------cccCcccceecceeeEEEecCcceEEEEecccccc
Confidence 479999999999999999999999999999999742 12222211111223444433 22222
Q ss_pred CCCHHHHHHHHHhccCCCCCCHHHH--HHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 044030 129 TLTVKEAVYYSAQLQLPDTMPKSDK--KERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSG 206 (449)
Q Consensus 129 ~lTv~e~l~~~~~~~~~~~~~~~~~--~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsg 206 (449)
. ..++ ..+..... .++++.++..+++. +.++.+||+|++|++.+|++|+..|.++++ ++
T Consensus 218 ~--a~~~----------~~L~~~fl~~~era~~lL~vvDls---~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NK 278 (416)
T 1udx_A 218 G--ASEG----------KGLGLEFLRHIARTRVLLYVLDAA---DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NK 278 (416)
T ss_dssp C--GGGS----------CCSCHHHHHHHTSSSEEEEEEETT---SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----EC
T ss_pred c--hhhh----------hhhhHHHHHHHHHHHhhhEEeCCc---cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----EC
Confidence 1 0000 01111100 01122233334444 566788999999999999999999999999 99
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEE
Q 044030 207 LDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLC 251 (449)
Q Consensus 207 LD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~ 251 (449)
+|...+ ..++.+++..++.+. +++++|..-...+.++++.+.
T Consensus 279 lDl~~~-~~~~~l~~~l~~~g~--~vi~iSA~~g~gi~eL~~~i~ 320 (416)
T 1udx_A 279 VDLLEE-EAVKALADALAREGL--AVLPVSALTGAGLPALKEALH 320 (416)
T ss_dssp CTTSCH-HHHHHHHHHHHTTTS--CEEECCTTTCTTHHHHHHHHH
T ss_pred CChhhH-HHHHHHHHHHHhcCC--eEEEEECCCccCHHHHHHHHH
Confidence 999877 555555554444444 666555332445666666543
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=5.2e-17 Score=162.94 Aligned_cols=171 Identities=17% Similarity=0.190 Sum_probs=115.5
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
++.+|+++. + +.+.+|+++|+++.+|++++|+||||||||||+|+|+|++.+. +|+|.+.|.+...
T Consensus 30 ie~~~~~~~-~-----~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~---~g~v~i~~~d~~~~~~~~ 100 (337)
T 2qm8_A 30 AESRRADHR-A-----AVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAA---GHKVAVLAVDPSSTRTGG 100 (337)
T ss_dssp HTCSSHHHH-H-----HHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEEECGGGGSSCC
T ss_pred HeeCCcccc-c-----ChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhC---CCEEEEEEEcCccccccc
Confidence 456667665 1 3467999999999999999999999999999999999998663 7999999876421
Q ss_pred ----ccCcEEEEcCCCCCCCCCC------------HHHHHHHH-----------------------------HhccCCCC
Q 044030 113 ----AYGTSAYVTQDDTLITTLT------------VKEAVYYS-----------------------------AQLQLPDT 147 (449)
Q Consensus 113 ----~~~~i~yv~Q~~~l~~~lT------------v~e~l~~~-----------------------------~~~~~~~~ 147 (449)
....++|++|++.+++..+ +.|.+... ..+..+.
T Consensus 101 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~- 179 (337)
T 2qm8_A 101 SILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPG- 179 (337)
T ss_dssp CSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSC-
T ss_pred chHHHhhhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCC-
Confidence 1245899999987765321 23332110 0000000
Q ss_pred CCHHHH---HHHHHHHHHHcCCchhhCc-cCCCCChHHHHHHHHHHHHHh------CCCEEEEeCCCCCCCHHHHHHHHH
Q 044030 148 MPKSDK---KERAEVTIREMGLQDAMNT-RIRRLSGGQKRRVSISIEILT------RPKLLFLDEPTSGLDSAASYYVMS 217 (449)
Q Consensus 148 ~~~~~~---~~~v~~~l~~lgL~~~~~~-~~~~LSgGerqRv~ia~aL~~------~P~llllDEPtsgLD~~~~~~i~~ 217 (449)
...+. +..+.+....+.+ +..|. ....+|+|++|++..+++++. +|++++ +|++|......+++
T Consensus 180 -~~~~~~~i~~~i~~~~~ivvl-NK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~ 253 (337)
T 2qm8_A 180 -AGDELQGIKKGIFELADMIAV-NKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWS 253 (337)
T ss_dssp -C------CCTTHHHHCSEEEE-ECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHH
T ss_pred -CcccHHHHHHHHhccccEEEE-EchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHH
Confidence 00000 0011122222223 33442 235689999999999999987 688887 99999999999999
Q ss_pred HHHHHHh
Q 044030 218 RIAKLGQ 224 (449)
Q Consensus 218 ~l~~l~~ 224 (449)
.|.++.+
T Consensus 254 ~I~~~~~ 260 (337)
T 2qm8_A 254 RIEDHRS 260 (337)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988763
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=9.3e-16 Score=139.19 Aligned_cols=114 Identities=17% Similarity=0.140 Sum_probs=76.0
Q ss_pred eEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHHHHHHHhc
Q 044030 63 TGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQL 142 (449)
Q Consensus 63 s~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~ 142 (449)
++.+++|+.++|.||||+|||||+++|++.+.+. +|. .+.| +++.+.+....
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~---~g~-------------~~~~----------~~~~~~~~~~~-- 83 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEK---KGI-------------RGYF----------FDTKDLIFRLK-- 83 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHH---SCC-------------CCCE----------EEHHHHHHHHH--
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHH---cCC-------------eEEE----------EEHHHHHHHHH--
Confidence 4566789999999999999999999999987431 231 0112 23333332111
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCC-CCCHHHHHHHHHHHHH
Q 044030 143 QLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTS-GLDSAASYYVMSRIAK 221 (449)
Q Consensus 143 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPts-gLD~~~~~~i~~~l~~ 221 (449)
.....-.. . -....+.+|++|+||||++ ++|+..+..+.+++..
T Consensus 84 ----------------~~~~~~~~-----------~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~ 128 (180)
T 3ec2_A 84 ----------------HLMDEGKD-----------T--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITY 128 (180)
T ss_dssp ----------------HHHHHTCC-----------S--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHH
T ss_pred ----------------HHhcCchH-----------H--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHH
Confidence 00010000 0 1123345999999999985 9999999999999988
Q ss_pred HHhhcCCCeEEEEEecCCcHH
Q 044030 222 LGQRDGIGRTIIASIHQPSSE 242 (449)
Q Consensus 222 l~~~~g~g~tii~~tH~~~~~ 242 (449)
..+ .|. ++|++||.+..+
T Consensus 129 ~~~-~~~--~ii~tsn~~~~~ 146 (180)
T 3ec2_A 129 RYN-NLK--STIITTNYSLQR 146 (180)
T ss_dssp HHH-TTC--EEEEECCCCSCC
T ss_pred HHH-cCC--CEEEEcCCChhH
Confidence 864 344 999999997543
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.47 E-value=8.9e-14 Score=141.05 Aligned_cols=77 Identities=23% Similarity=0.272 Sum_probs=67.8
Q ss_pred ccCCCCChHHHHHH------HHHHHHHhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHH
Q 044030 172 TRIRRLSGGQKRRV------SISIEILTR-PKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVF 244 (449)
Q Consensus 172 ~~~~~LSgGerqRv------~ia~aL~~~-P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~ 244 (449)
.++..|||||+||+ ++|++|+.+ |+++||||||+|||+..+..+.+.|+++. . +. +||++||++ ++.
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~-~~--~vi~~th~~--~~~ 349 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-S-IP--QMIIITHHR--ELE 349 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-S-CS--EEEEEESCG--GGG
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-c-CC--eEEEEEChH--HHH
Confidence 45678999999988 567888999 99999999999999999999999999875 2 23 899999996 367
Q ss_pred hhcCeEEEee
Q 044030 245 QLFHNLCLLS 254 (449)
Q Consensus 245 ~~~D~v~~l~ 254 (449)
..||++++|+
T Consensus 350 ~~~d~~~~l~ 359 (371)
T 3auy_A 350 DVADVIINVK 359 (371)
T ss_dssp GGCSEEEEEE
T ss_pred hhCCEEEEEE
Confidence 8999999997
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.2e-14 Score=126.00 Aligned_cols=98 Identities=18% Similarity=0.329 Sum_probs=71.1
Q ss_pred ceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHHH
Q 044030 57 SILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAV 136 (449)
Q Consensus 57 ~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l 136 (449)
.+|+++ +|+.++|+||||||||||+++|+|...+ +| ..+.|+...+....
T Consensus 29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~----~g-------------~~~~~~~~~~~~~~-------- 78 (149)
T 2kjq_A 29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE----AG-------------KNAAYIDAASMPLT-------- 78 (149)
T ss_dssp HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT----TT-------------CCEEEEETTTSCCC--------
T ss_pred HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh----cC-------------CcEEEEcHHHhhHH--------
Confidence 467777 8999999999999999999999998754 24 01233332211100
Q ss_pred HHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHH
Q 044030 137 YYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVM 216 (449)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~ 216 (449)
+++.+|++|++|||++ +|...+..+.
T Consensus 79 -----------------------------------------------------~~~~~~~lLilDE~~~-~~~~~~~~l~ 104 (149)
T 2kjq_A 79 -----------------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQALLF 104 (149)
T ss_dssp -----------------------------------------------------GGGGGCSEEEEESTTC-CCSHHHHHHH
T ss_pred -----------------------------------------------------HHHhCCCEEEEeCccc-cChHHHHHHH
Confidence 2356899999999998 6665588899
Q ss_pred HHHHHHHhhcCCCeE-EEEEecCCcH
Q 044030 217 SRIAKLGQRDGIGRT-IIASIHQPSS 241 (449)
Q Consensus 217 ~~l~~l~~~~g~g~t-ii~~tH~~~~ 241 (449)
+++..+.++ |+ + +|+++|.+..
T Consensus 105 ~li~~~~~~-g~--~~iiits~~~p~ 127 (149)
T 2kjq_A 105 SIFNRFRNS-GK--GFLLLGSEYTPQ 127 (149)
T ss_dssp HHHHHHHHH-TC--CEEEEEESSCTT
T ss_pred HHHHHHHHc-CC--cEEEEECCCCHH
Confidence 999998754 43 7 8999997543
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.44 E-value=5.5e-15 Score=145.95 Aligned_cols=117 Identities=14% Similarity=0.252 Sum_probs=84.4
Q ss_pred EecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE---CCEecccc-----cCcEEEEcCCCCCC-----CCCCH
Q 044030 66 AKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILI---NGHKKALA-----YGTSAYVTQDDTLI-----TTLTV 132 (449)
Q Consensus 66 i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~---~g~~~~~~-----~~~i~yv~Q~~~l~-----~~lTv 132 (449)
+.+|++++|+||||||||||+|+|+ ...+ .+|+|.+ +|++.+.. .+.+||++|++.+. +.+|+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~---~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEEL---RTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCC---CCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhC---cccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH
Confidence 4569999999999999999999999 8766 4899999 88764321 13579999998653 78899
Q ss_pred HHHH--HHH------HhccCCCCCCHHHHHHHHHHHHHHcCCch-hhCccCCCCChHHHHHHHHHH
Q 044030 133 KEAV--YYS------AQLQLPDTMPKSDKKERAEVTIREMGLQD-AMNTRIRRLSGGQKRRVSISI 189 (449)
Q Consensus 133 ~e~l--~~~------~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LSgGerqRv~ia~ 189 (449)
|++ .|. ++++ ......+...++.++++.++|.+ ..+.+++.|||.++|++.|||
T Consensus 238 -e~l~~~f~~~~~~~c~~~--~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYP--DCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp -GGGGGGCGGGHHHHHHST--TCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred -HHHHHHHHHHHHccCCCC--CCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888 453 1122 11122233456889999999986 889999999999999999986
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.42 E-value=5.3e-15 Score=145.28 Aligned_cols=128 Identities=16% Similarity=0.160 Sum_probs=88.2
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHHHHHHHh---cc
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQ---LQ 143 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~---~~ 143 (449)
.++.+++|.||+|||||||.+.|++.+.+ .| . ..+.+.+|+|++.+++. ++++++.+... +.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~----~g------~----~~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME----KY------G----GEKSIGYASIDDFYLTH-EDQLKLNEQFKNNKLL 93 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH----HH------G----GGSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh----cC------C----CCceEEEeccccccCCh-HHHHHHhccccccchh
Confidence 46789999999999999999999998754 22 0 12345566999988875 88899887631 11
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCc------h--hhCccCCCCChHHHHHHHHH--HHHHhCCCEEEEeCCCCCCCHHH
Q 044030 144 LPDTMPKSDKKERAEVTIREMGLQ------D--AMNTRIRRLSGGQKRRVSIS--IEILTRPKLLFLDEPTSGLDSAA 211 (449)
Q Consensus 144 ~~~~~~~~~~~~~v~~~l~~lgL~------~--~~~~~~~~LSgGerqRv~ia--~aL~~~P~llllDEPtsgLD~~~ 211 (449)
...+.+.........+.++.+.-. . ....+...+||||+||+.+| +++ +|+|+|+|||++++|+..
T Consensus 94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp SSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 001112222233455666666332 1 12344478999999999987 555 999999999999999853
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=4.1e-16 Score=160.51 Aligned_cols=134 Identities=23% Similarity=0.234 Sum_probs=93.1
Q ss_pred ceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc---------cCcEEEEc------
Q 044030 57 SILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA---------YGTSAYVT------ 121 (449)
Q Consensus 57 ~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~---------~~~i~yv~------ 121 (449)
.+|+++ + .++|++++|+|||||||||||++|+|.+++. +|+|.+.|.++... ...+++.+
T Consensus 157 ~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~---~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~ 231 (418)
T 1p9r_A 157 DNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSS---ERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRA 231 (418)
T ss_dssp HHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCT---TSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHH
T ss_pred HHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEEecccchhccCCcceEEEccccCcCHHHHHHH
Confidence 366666 4 3799999999999999999999999998763 79999988765321 12344544
Q ss_pred ---CCCCC--CCC----CCHHHHHHHHHhccCC-CCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHH
Q 044030 122 ---QDDTL--ITT----LTVKEAVYYSAQLQLP-DTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEI 191 (449)
Q Consensus 122 ---Q~~~l--~~~----lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL 191 (449)
|++.. +.. .|+.+++.++..-+.. .......... +...+..+|+.+.. .+..|||||+|| ||++|
T Consensus 232 ~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~-~i~rL~~lgl~~~~--~~~~LSgg~~QR--LaraL 306 (418)
T 1p9r_A 232 ILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVG-AVTRLRDMGIEPFL--ISSSLLGVLAQR--LVRTL 306 (418)
T ss_dssp HGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHH-HHHHHHHHTCCHHH--HHHHEEEEEEEE--EEEEE
T ss_pred HhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHH-HHHHHHHcCCcHHH--HHHHHHHHHHHH--hhhhh
Confidence 88765 344 6889998876421100 0000011112 23356778987754 678999999999 99999
Q ss_pred HhCCCEEEE
Q 044030 192 LTRPKLLFL 200 (449)
Q Consensus 192 ~~~P~llll 200 (449)
+.+|++..-
T Consensus 307 ~~~p~~~~~ 315 (418)
T 1p9r_A 307 CPDCKEPYE 315 (418)
T ss_dssp CTTTCEEEE
T ss_pred cCCCCccCC
Confidence 999998763
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.39 E-value=3e-13 Score=135.16 Aligned_cols=143 Identities=17% Similarity=0.138 Sum_probs=76.9
Q ss_pred EEEECCCCCcHHHHHHHHHc-CCCCCCCceeEEEECCEeccc---ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCC
Q 044030 72 LAIMGPSGSGKTTLLDALAG-RLGSDTRQTGKILINGHKKAL---AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDT 147 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G-~~~~~~~~~G~I~~~g~~~~~---~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~ 147 (449)
+.|.||||+|||||+++|+| +..+ ..|.+.++|.+... ....+++++|.+.+.-... + .. .
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~---~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~~---~ 103 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGP---GVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D-------MG---N 103 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCT---TCCC------------------CCEECSSEEEECCC----------------
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCC---CCCeEEecceeecccccccceeeeecccceEEecHh--h-------cC---C
Confidence 89999999999999999999 6655 37999999865321 1245778888664321100 0 00 0
Q ss_pred CCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcC
Q 044030 148 MPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDG 227 (449)
Q Consensus 148 ~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g 227 (449)
......++.++++....++.+. . .||| +..+|+++++|||++ ||+.++..+.+.|.+..+
T Consensus 104 ~~~~~~~~~i~~~~~~~~~~~~----~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~--- 163 (354)
T 1sxj_E 104 NDRIVIQELLKEVAQMEQVDFQ----D-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSK--- 163 (354)
T ss_dssp CCHHHHHHHHHHHTTTTC----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTT---
T ss_pred cchHHHHHHHHHHHHhcccccc----c-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcC---
Confidence 0111112222222222222221 1 5566 788999999999999 999999999999988642
Q ss_pred CCeEEEEEecCCcHHHHhhcCeE
Q 044030 228 IGRTIIASIHQPSSEVFQLFHNL 250 (449)
Q Consensus 228 ~g~tii~~tH~~~~~i~~~~D~v 250 (449)
+.++|+++|++......+.+|.
T Consensus 164 -~~~~Il~t~~~~~l~~~l~sR~ 185 (354)
T 1sxj_E 164 -NIRLIMVCDSMSPIIAPIKSQC 185 (354)
T ss_dssp -TEEEEEEESCSCSSCHHHHTTS
T ss_pred -CCEEEEEeCCHHHHHHHHHhhc
Confidence 4599999999754323333443
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=2.3e-12 Score=131.87 Aligned_cols=161 Identities=14% Similarity=0.209 Sum_probs=92.1
Q ss_pred eeeee-eEEEecCeEEEEECCCCCcHHHHHHHH--HcCCCCCC--CceeEEEECCEecccccCcEEEEcCCCCCCCCCCH
Q 044030 58 ILEDL-TGYAKPGHLLAIMGPSGSGKTTLLDAL--AGRLGSDT--RQTGKILINGHKKALAYGTSAYVTQDDTLITTLTV 132 (449)
Q Consensus 58 iL~~v-s~~i~~Ge~~~IlGpnGaGKSTLL~~l--~G~~~~~~--~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv 132 (449)
-|+.+ .+-|++|++++|+||||||||||++.| ++..++.. ...+.++++++.. + ..
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~---------------~----~~ 226 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGT---------------F----RP 226 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC---------------C----CH
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCc---------------c----CH
Confidence 44443 367999999999999999999999944 56554310 0133566655421 0 01
Q ss_pred HHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCCh-HHHHHHHHHHHHH--hCCCEEEEeCCCCCCCH
Q 044030 133 KEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSG-GQKRRVSISIEIL--TRPKLLFLDEPTSGLDS 209 (449)
Q Consensus 133 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSg-GerqRv~ia~aL~--~~P~llllDEPtsgLD~ 209 (449)
........++ ++... .+++.+-+ ....++ .+.+.+.-+.+++ .+|+++++|||++.+|+
T Consensus 227 ~rl~~~a~~~----gl~~~-------~vleni~~-------~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~ 288 (400)
T 3lda_A 227 VRLVSIAQRF----GLDPD-------DALNNVAY-------ARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRT 288 (400)
T ss_dssp HHHHHHHHHT----TCCHH-------HHHHTEEE-------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-
T ss_pred HHHHHHHHHc----CCChH-------hHhhcEEE-------eccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCch
Confidence 1000011111 01100 11111111 011122 1223333333333 47999999999999997
Q ss_pred HHH------------HHHHHHHHHHHhhcCCCeEEEEEecCCc------------------HHHHhhcCeEEEeeCCe
Q 044030 210 AAS------------YYVMSRIAKLGQRDGIGRTIIASIHQPS------------------SEVFQLFHNLCLLSAGQ 257 (449)
Q Consensus 210 ~~~------------~~i~~~l~~l~~~~g~g~tii~~tH~~~------------------~~i~~~~D~v~~l~~G~ 257 (449)
... ..+++.|++++++.|. |||+++|... ..+.+.+|.++.|+.++
T Consensus 289 ~~sg~g~l~~Rq~~l~~il~~L~~lake~gi--tVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 289 DFSGRGELSARQMHLAKFMRALQRLADQFGV--AVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHCC--EEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred hhcCccchHHHHHHHHHHHHHHHHHHHHcCC--EEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 543 6788999999988776 9999999821 23467789999998764
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.1e-15 Score=138.65 Aligned_cols=136 Identities=16% Similarity=0.187 Sum_probs=84.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec-cc------c-c-CcEE----EEcCCCCCCCCCCHHHHH
Q 044030 70 HLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKK-AL------A-Y-GTSA----YVTQDDTLITTLTVKEAV 136 (449)
Q Consensus 70 e~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~-~~------~-~-~~i~----yv~Q~~~l~~~lTv~e~l 136 (449)
++++|+|+||||||||+++|+|++.+.....|.|.++|.+. +. . + +.++ +++|+..++ +.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 58999999999999999999999876322379999999762 11 1 1 2355 788876654 000
Q ss_pred HHHHhccCCCCCCHHHHHHHHHHHHHH-cCCchhhCccC-CCCChHHHHHHHHHHHHHhCCCEE-------EEeCCCCC-
Q 044030 137 YYSAQLQLPDTMPKSDKKERAEVTIRE-MGLQDAMNTRI-RRLSGGQKRRVSISIEILTRPKLL-------FLDEPTSG- 206 (449)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~v~~~l~~-lgL~~~~~~~~-~~LSgGerqRv~ia~aL~~~P~ll-------llDEPtsg- 206 (449)
. . .+....+.++++. +. -.|+.+ .+|||||+||++||||++.+|++. .-|.|..+
T Consensus 77 --------~---~-~~~~a~l~~~i~~~l~---g~dt~i~EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~ 141 (171)
T 2f1r_A 77 --------V---S-EEEGNDLDWIYERYLS---DYDLVITEGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGH 141 (171)
T ss_dssp --------C---C-HHHHTCHHHHHHHHTT---TCSEEEEESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSS
T ss_pred --------C---C-hhhhhCHHHHHHhhCC---CCCEEEECCcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccC
Confidence 0 0 1111134455555 42 123333 359999999999999999999873 23555322
Q ss_pred --CCHHHHHHHHHHHHHHHhhc
Q 044030 207 --LDSAASYYVMSRIAKLGQRD 226 (449)
Q Consensus 207 --LD~~~~~~i~~~l~~l~~~~ 226 (449)
+|......+.+.+.+...+.
T Consensus 142 ~~f~~~~~~~~a~~i~~~~~~~ 163 (171)
T 2f1r_A 142 KWFRRDEVERIAEFILSLLREG 163 (171)
T ss_dssp CEECTTCHHHHHHHHHHHHTC-
T ss_pred cccCcccHHHHHHHHHHHHhcc
Confidence 34455677888887766553
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.37 E-value=8.8e-17 Score=169.58 Aligned_cols=173 Identities=15% Similarity=0.134 Sum_probs=108.5
Q ss_pred cceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe-cccc-cCcEEEEcCCCCC-------
Q 044030 56 SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHK-KALA-YGTSAYVTQDDTL------- 126 (449)
Q Consensus 56 ~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~-~~~~-~~~i~yv~Q~~~l------- 126 (449)
..+++++++.+++|+.++|+|||||||||||++|+|+++|+ +|.|+++|.. .... ...++++.|....
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~---~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~ 323 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD---AKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT---CCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC---CCEEEEcCcccccCCCCCeEEEEeecccccCCcCHH
Confidence 45789999999999999999999999999999999999774 8999999864 2211 2345566554332
Q ss_pred ---------------CCCCCHHHHHHHHHhccCCCC-CCHHHHHHHHHHHHHHcC-----Cch----hhC---ccCCCCC
Q 044030 127 ---------------ITTLTVKEAVYYSAQLQLPDT-MPKSDKKERAEVTIREMG-----LQD----AMN---TRIRRLS 178 (449)
Q Consensus 127 ---------------~~~lTv~e~l~~~~~~~~~~~-~~~~~~~~~v~~~l~~lg-----L~~----~~~---~~~~~LS 178 (449)
+..++..|++.+...+..+.. ++. .....+.++++.+. +.. ..+ .....+|
T Consensus 324 ~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT-~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s 402 (511)
T 2oap_1 324 DLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYST-LHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVR 402 (511)
T ss_dssp HHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEE-EECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEES
T ss_pred HHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccc-cccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEe
Confidence 234455554433322211100 000 00001223333332 221 122 2335689
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEE--EecCCcHHHHhhcC
Q 044030 179 GGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIA--SIHQPSSEVFQLFH 248 (449)
Q Consensus 179 gGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~--~tH~~~~~i~~~~D 248 (449)
+||+||++++. + | |+|||+.....+++.|.++.+ .+. |+++ +||++ .++...|+
T Consensus 403 ~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~-~~~--tii~~~~sH~l-~ei~~~~g 458 (511)
T 2oap_1 403 GNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDP-KED--KHIEVSMPKKL-EKMADFLG 458 (511)
T ss_dssp SSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEET-TTT--EEEECSCCTHH-HHHHHHHT
T ss_pred CCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcc-cCC--EEEEcccHHHH-HHHHHHcC
Confidence 99999877652 2 7 999999888777777777753 344 8875 89995 56776664
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.31 E-value=7.8e-14 Score=137.58 Aligned_cols=105 Identities=13% Similarity=0.245 Sum_probs=72.7
Q ss_pred EEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE---CCEecccc-----cCcEEEEcCCCC-----------
Q 044030 65 YAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILI---NGHKKALA-----YGTSAYVTQDDT----------- 125 (449)
Q Consensus 65 ~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~---~g~~~~~~-----~~~i~yv~Q~~~----------- 125 (449)
++.+|++++|+||||||||||||+|+|+..|. +|+|.+ +|++.... .+.++||+|.+.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~---~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~ 241 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEP 241 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC----------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhccccccc---ccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCH
Confidence 45579999999999999999999999998774 899999 88764321 135799999974
Q ss_pred -----CCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-hhhCccCCCCCh
Q 044030 126 -----LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-DAMNTRIRRLSG 179 (449)
Q Consensus 126 -----l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~~~~LSg 179 (449)
++|++|+ ||+.|.. +. ...+...++.++++.+||. +..+.+++.||+
T Consensus 242 ~~~~~l~~~~~~-~n~~~~~-~~-----~~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse 294 (301)
T 1u0l_A 242 EELKHYFKEFGD-KQCFFSD-CN-----HVDEPECGVKEAVENGEIAESRYENYVKMFYE 294 (301)
T ss_dssp HHHGGGSTTSSS-CCCSSTT-CC-----SSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccc-ccCcCCC-Cc-----CCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 5888999 9987753 21 1122345688999999995 788888888885
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=7.7e-15 Score=146.70 Aligned_cols=169 Identities=20% Similarity=0.235 Sum_probs=111.4
Q ss_pred cccceeeeeeEEEecC-------eEEEEECCCCCcHHHHHHHHHcCCCCC-CCceeEEEECCEecc-----cccCcEEEE
Q 044030 54 GSSSILEDLTGYAKPG-------HLLAIMGPSGSGKTTLLDALAGRLGSD-TRQTGKILINGHKKA-----LAYGTSAYV 120 (449)
Q Consensus 54 ~~~~iL~~vs~~i~~G-------e~~~IlGpnGaGKSTLL~~l~G~~~~~-~~~~G~I~~~g~~~~-----~~~~~i~yv 120 (449)
+...+++++++.+++| +.++|.||||+|||||+++|+|.+... .+.+|.+..++.+.. .....+.|+
T Consensus 29 g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~i 108 (334)
T 1in4_A 29 GQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFI 108 (334)
T ss_dssp SCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEE
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEE
Confidence 4567899999999887 899999999999999999999986221 113666665554321 123468999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhccCCCC-CCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEE
Q 044030 121 TQDDTLITTLTVKEAVYYSAQLQLPDT-MPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLF 199 (449)
Q Consensus 121 ~Q~~~l~~~lTv~e~l~~~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~lll 199 (449)
+|.+.+.+ ++.|++..........- .......+.+...+..+++.. +.+.+..||+|+|||+.++
T Consensus 109 DE~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~~~~Ls~~l~sR~~l~----------- 174 (334)
T 1in4_A 109 DEIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTRSGLLSSPLRSRFGII----------- 174 (334)
T ss_dssp ETGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESCGGGSCHHHHTTCSEE-----------
T ss_pred cchhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCCcccCCHHHHHhcCce-----------
Confidence 99887765 78888865443221000 001122234555566677755 7788899999999998655
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCe
Q 044030 200 LDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHN 249 (449)
Q Consensus 200 lDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~ 249 (449)
.+||+.+...+.++|++.++..+ ++|++ +.+..++++
T Consensus 175 -----~~Ld~~~~~~l~~iL~~~~~~~~-------~~~~~-~~~~~ia~~ 211 (334)
T 1in4_A 175 -----LELDFYTVKELKEIIKRAASLMD-------VEIED-AAAEMIAKR 211 (334)
T ss_dssp -----EECCCCCHHHHHHHHHHHHHHTT-------CCBCH-HHHHHHHHT
T ss_pred -----eeCCCCCHHHHHHHHHHHHHHcC-------CCcCH-HHHHHHHHh
Confidence 78899999999999999886543 24663 445555554
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.30 E-value=3e-15 Score=152.67 Aligned_cols=169 Identities=12% Similarity=0.124 Sum_probs=118.8
Q ss_pred EEecCeEEEEECCCCCcHHHHHHHHHcCCC---------CCCCceeEEEECCEeccc------ccC---cEEEEcCCCCC
Q 044030 65 YAKPGHLLAIMGPSGSGKTTLLDALAGRLG---------SDTRQTGKILINGHKKAL------AYG---TSAYVTQDDTL 126 (449)
Q Consensus 65 ~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~---------~~~~~~G~I~~~g~~~~~------~~~---~i~yv~Q~~~l 126 (449)
.+++|..++|+|+||||||||+|+|+|... .-.+.+|.|.++|..... ..+ ...++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 557899999999999999999999999321 012358999999843210 111 13477788888
Q ss_pred CCCCCHHHHH--HHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCC--CEEEEeC
Q 044030 127 ITTLTVKEAV--YYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRP--KLLFLDE 202 (449)
Q Consensus 127 ~~~lTv~e~l--~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P--~llllDE 202 (449)
++..+..|++ .|...++. ++.++..++.. .+..+..+||+. +| ++.++||
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~------------~d~il~Vvd~~--~d~~i~~v~~~~------------dP~~di~ilde 149 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRA------------VDAIYQVVRAF--DDAEIIHVEGDV------------DPIRDLSIIVD 149 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTT------------CSEEEEEEECC--CTTCSSCCSSSS------------CHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHH------------HHHHHHHHhcc--ccceeeeecccc------------Ccchhhhhchh
Confidence 8877776655 34333321 11111112221 144555577653 89 9999999
Q ss_pred CCCCCCHHHHHHHHHHHHHH-HhhcCCCeEEEEEecCCcHHHHhhcCeEE-EeeCC-eEEEecChh
Q 044030 203 PTSGLDSAASYYVMSRIAKL-GQRDGIGRTIIASIHQPSSEVFQLFHNLC-LLSAG-QTVYFGPAT 265 (449)
Q Consensus 203 PtsgLD~~~~~~i~~~l~~l-~~~~g~g~tii~~tH~~~~~i~~~~D~v~-~l~~G-~iv~~g~~~ 265 (449)
|+.++|+......++.+... + ..|. ||+ +|+. .++.++||++. +|.+| ++++.|+.+
T Consensus 150 el~~~D~~~~~k~~~~l~~~~~-~~g~--ti~--sh~~-~~~~~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 150 ELLIKDAEFVEKHLEGLRKITS-RGAN--TLE--MKAK-KEEQAIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC-CSSC--SSS--HHHH-HHHHHHHHHHHHHHHTTCSCGGGSCCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHH-hcCC--ccc--cccH-HHHHHHHHHHHHHhccCCceeecCCCC
Confidence 99999999999999999988 5 3443 764 9995 68899999999 99999 998887654
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.1e-14 Score=135.64 Aligned_cols=160 Identities=19% Similarity=0.152 Sum_probs=87.8
Q ss_pred EecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCC
Q 044030 66 AKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLP 145 (449)
Q Consensus 66 i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~ 145 (449)
.++|++++|+||||||||||+++|+|++++. | ..+++|++++..++. +..+++......
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~----g-------------~~~g~v~~d~~~~~~-~~~~~~~~~~~~--- 77 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ----G-------------LPAEVVPMDGFHLDN-RLLEPRGLLPRK--- 77 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT----T-------------CCEEEEESGGGBCCH-HHHGGGTCGGGT---
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc----C-------------CceEEEecCCCcCCH-HHHHHhcccccC---
Confidence 5789999999999999999999999998642 2 123445544433321 111211100000
Q ss_pred CCCCHHHHHHHHHHHHHHcC----CchhhCccCCCCChHHHHHHHHH-HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 044030 146 DTMPKSDKKERAEVTIREMG----LQDAMNTRIRRLSGGQKRRVSIS-IEILTRPKLLFLDEPTSGLDSAASYYVMSRIA 220 (449)
Q Consensus 146 ~~~~~~~~~~~v~~~l~~lg----L~~~~~~~~~~LSgGerqRv~ia-~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~ 220 (449)
............+.+..+. +.-..-.....+|+||+||++++ ++++.++.++++|||.. ..+.
T Consensus 78 -~~~~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-----------~~l~ 145 (208)
T 3c8u_A 78 -GAPETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-----------RDLT 145 (208)
T ss_dssp -TSGGGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------GGGG
T ss_pred -CCCchhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchh-----------HHHH
Confidence 0111001111222333321 11111122246799999999997 77888888888888731 1112
Q ss_pred HHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHHHHH
Q 044030 221 KLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANEFF 271 (449)
Q Consensus 221 ~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~~~f 271 (449)
.+. . .+|++.+.....+.+.+.|. +..|. +.+++...+
T Consensus 146 ~~~----d--~~i~vd~~~~~~~~R~~~R~--~~~g~-----t~~~~~~~~ 183 (208)
T 3c8u_A 146 AIW----D--VSIRLEVPMADLEARLVQRW--LDHGL-----NHDAAVARA 183 (208)
T ss_dssp GTC----S--EEEEECCCHHHHHHHHHHHH--HHTTC-----CHHHHHHHH
T ss_pred Hhc----C--EEEEEeCCHHHHHHHHHHHH--HhcCC-----CHHHHHHHH
Confidence 222 2 67778887544466777763 34554 555555433
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.24 E-value=4.7e-13 Score=132.22 Aligned_cols=117 Identities=16% Similarity=0.197 Sum_probs=69.9
Q ss_pred EEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE---CCEeccccc---C-cEEEEcCCCCCCC----CCCH
Q 044030 64 GYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILI---NGHKKALAY---G-TSAYVTQDDTLIT----TLTV 132 (449)
Q Consensus 64 ~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~---~g~~~~~~~---~-~i~yv~Q~~~l~~----~lTv 132 (449)
+++.+|++++|+||||||||||+|+|+|...+ .+|+|.+ +|+..+... + .++|++|.+.+.+ .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~---~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~ 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGL---RTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC----------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccc---cccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH
Confidence 45678999999999999999999999999876 4899998 776543211 1 1699999987755 6899
Q ss_pred HHHHH--HHH------hccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHH
Q 044030 133 KEAVY--YSA------QLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRR 184 (449)
Q Consensus 133 ~e~l~--~~~------~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqR 184 (449)
|++. |.. .++........+....+.++++.++|.+........++.|++||
T Consensus 245 -e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~~lls~~~~~ 303 (307)
T 1t9h_A 245 -EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKDR 303 (307)
T ss_dssp -HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHhhc
Confidence 8883 321 11111111112233468899999999876656666777787763
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.4e-15 Score=148.21 Aligned_cols=141 Identities=19% Similarity=0.220 Sum_probs=96.8
Q ss_pred ccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc-----cCcEEEEcCCC-CCCC
Q 044030 55 SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA-----YGTSAYVTQDD-TLIT 128 (449)
Q Consensus 55 ~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~-----~~~i~yv~Q~~-~l~~ 128 (449)
...+++++++.+++| ++|+||||||||||+++|+|...+ |.|.++|.+.... .+.+++++|.. ...|
T Consensus 32 ~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p 104 (274)
T 2x8a_A 32 NPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAP 104 (274)
T ss_dssp SHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCS
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCC
Confidence 456899999999999 999999999999999999998643 7899998654211 12466777764 4455
Q ss_pred CCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCC---
Q 044030 129 TLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTS--- 205 (449)
Q Consensus 129 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPts--- 205 (449)
.+++.|++.+....+ .. .... .+....++.+..|||||+||+.|++|+.++|++| |||+.
T Consensus 105 ~i~~~Deid~~~~~r-------~~--~~~~------~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~g 167 (274)
T 2x8a_A 105 CVIFFDEVDALCPRR-------SD--RETG------ASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPG 167 (274)
T ss_dssp EEEEEETCTTTCC------------------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTT
T ss_pred CeEeeehhhhhhccc-------CC--Ccch------HHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcc
Confidence 556666654321110 00 0000 1334556677889999999999999999999986 88864
Q ss_pred ---------CCCHHHHHHHHHHH
Q 044030 206 ---------GLDSAASYYVMSRI 219 (449)
Q Consensus 206 ---------gLD~~~~~~i~~~l 219 (449)
-.|...+..|++.+
T Consensus 168 Rfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 168 RLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp SSCEEEECCSCCHHHHHHHHHHH
T ss_pred cCCeEEEeCCcCHHHHHHHHHHH
Confidence 23566666665543
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.6e-10 Score=108.88 Aligned_cols=61 Identities=16% Similarity=0.122 Sum_probs=47.2
Q ss_pred hCCCEEEEeCCCCCC--CHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHH-------HHhhcCeEEEeeC
Q 044030 193 TRPKLLFLDEPTSGL--DSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSE-------VFQLFHNLCLLSA 255 (449)
Q Consensus 193 ~~P~llllDEPtsgL--D~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~-------i~~~~D~v~~l~~ 255 (449)
.+|+++++|+|++.+ |+.....++..|.+++++.|. |||+++|..... +.+.+|.++.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~--~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGC--TSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTC--EEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCC--eEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 589999999999988 665566777777777766666 999999986431 4678999999974
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=2.8e-13 Score=133.93 Aligned_cols=138 Identities=12% Similarity=0.145 Sum_probs=95.2
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEE-------------------ecCeEEEEECCCCCcHHHHHHHHHcCCC--C
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYA-------------------KPGHLLAIMGPSGSGKTTLLDALAGRLG--S 95 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i-------------------~~Ge~~~IlGpnGaGKSTLL~~l~G~~~--~ 95 (449)
.|+++||++.| .++++++|+.+ .+|+++||+||||||||||+++|+|++. |
T Consensus 37 ~i~~~~v~~~y--------~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~ 108 (308)
T 1sq5_A 37 DLSLEEVAEIY--------LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWP 108 (308)
T ss_dssp TCCHHHHHHTH--------HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTST
T ss_pred ccchHhHHHHH--------HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCC
Confidence 36788888762 25899999988 9999999999999999999999999876 5
Q ss_pred CCCceeEEEE---CCEeccc-ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhC
Q 044030 96 DTRQTGKILI---NGHKKAL-AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMN 171 (449)
Q Consensus 96 ~~~~~G~I~~---~g~~~~~-~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 171 (449)
.+|+|.+ +|..... ..+.++++ |...+++.+|+.+++.+...++.... .+ .
T Consensus 109 ---~~G~i~vi~~d~~~~~~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~~~~~-----------------~i----~ 163 (308)
T 1sq5_A 109 ---EHRRVELITTDGFLHPNQVLKERGLM-KKKGFPESYDMHRLVKFVSDLKSGVP-----------------NV----T 163 (308)
T ss_dssp ---TCCCEEEEEGGGGBCCHHHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHTTTCS-----------------CE----E
T ss_pred ---CCCeEEEEecCCccCcHHHHHhCCEe-ecCCCCCCccHHHHHHHHHHHhCCCC-----------------ce----e
Confidence 4899999 8865321 12346788 87778888999999988766542110 00 0
Q ss_pred ccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 044030 172 TRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDS 209 (449)
Q Consensus 172 ~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~ 209 (449)
.+....+.+ +|+..+.+.+.+|+++|+|.|....+.
T Consensus 164 ~P~~~~~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 164 APVYSHLIY--DVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp ECCEETTTT--EECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred ccccccccc--CcccccceecCCCCEEEECchhhCCCc
Confidence 111111111 222222234567899999999988774
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=99.15 E-value=4.6e-11 Score=124.21 Aligned_cols=175 Identities=11% Similarity=0.135 Sum_probs=115.0
Q ss_pred ccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCcee-EEEECCEecccccCcEEEEcCCCCCCCCCCHH
Q 044030 55 SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTG-KILINGHKKALAYGTSAYVTQDDTLITTLTVK 133 (449)
Q Consensus 55 ~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G-~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~ 133 (449)
+...|+++.+-+++|+++.|.|+||+|||||+..|++...+. .| .| .|+.-+ ++..
T Consensus 189 G~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~---~g~~V--------------l~~s~E------~s~~ 245 (454)
T 2r6a_A 189 GFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK---TNENV--------------AIFSLE------MSAQ 245 (454)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH---SSCCE--------------EEEESS------SCHH
T ss_pred CcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh---CCCcE--------------EEEECC------CCHH
Confidence 345789998889999999999999999999999998865321 23 23 333221 2222
Q ss_pred HHHHH--HHh-------ccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHH--hCCCEEEEeC
Q 044030 134 EAVYY--SAQ-------LQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEIL--TRPKLLFLDE 202 (449)
Q Consensus 134 e~l~~--~~~-------~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~--~~P~llllDE 202 (449)
+...- +.. ++.+ .+.. +...++.+.++.++..+..-....++|.+|.+ +.++.++ .+|+++++|+
T Consensus 246 ~l~~r~~~~~~~~~~~~l~~g-~l~~-~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~ 321 (454)
T 2r6a_A 246 QLVMRMLCAEGNINAQNLRTG-KLTP-EDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDY 321 (454)
T ss_dssp HHHHHHHHHHHTCCHHHHHTS-CCCH-HHHHHHHHHHHHHHSSCEEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEEC
T ss_pred HHHHHHHHHHcCCCHHHHhcC-CCCH-HHHHHHHHHHHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEcc
Confidence 21110 000 1100 1222 22344555566554433333334689999987 5667776 6899999999
Q ss_pred CCCCCC--------HHHHHHHHHHHHHHHhhcCCCeEEEEEec---------C--Cc-------HHHHhhcCeEEEeeCC
Q 044030 203 PTSGLD--------SAASYYVMSRIAKLGQRDGIGRTIIASIH---------Q--PS-------SEVFQLFHNLCLLSAG 256 (449)
Q Consensus 203 PtsgLD--------~~~~~~i~~~l~~l~~~~g~g~tii~~tH---------~--~~-------~~i~~~~D~v~~l~~G 256 (449)
++...+ ......+.+.|+.++++.|. +||+++| + |. ..+.+.+|.|++|+.+
T Consensus 322 l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i--~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~ 399 (454)
T 2r6a_A 322 LQLIQGSGRSKENRQQEVSEISRSLKALARELEV--PVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRD 399 (454)
T ss_dssp GGGSCCSCC----CHHHHHHHHHHHHHHHHHHTC--CEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEET
T ss_pred HHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCC--eEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecc
Confidence 998774 23446788889999988776 9999999 2 32 1467889999999877
Q ss_pred eE
Q 044030 257 QT 258 (449)
Q Consensus 257 ~i 258 (449)
+.
T Consensus 400 ~~ 401 (454)
T 2r6a_A 400 DY 401 (454)
T ss_dssp TC
T ss_pred cc
Confidence 54
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.13 E-value=9.2e-15 Score=135.35 Aligned_cols=57 Identities=18% Similarity=0.228 Sum_probs=42.8
Q ss_pred HHH-HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeC
Q 044030 187 ISI-EILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSA 255 (449)
Q Consensus 187 ia~-aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~ 255 (449)
.++ +++.+|++++|||||+++|..+...|.+.|....++ +...|.+ ..||.++++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~-------~~~a~~~-----~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD-------MESSKEP-----GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH-------TTGGGST-----TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-------HHHhhcc-----CCceEEEECCC
Confidence 445 677788888889999999999999999999887643 1234631 56899888763
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=99.09 E-value=1e-14 Score=137.80 Aligned_cols=39 Identities=26% Similarity=0.323 Sum_probs=22.9
Q ss_pred cceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHH-cCCC
Q 044030 56 SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALA-GRLG 94 (449)
Q Consensus 56 ~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~-G~~~ 94 (449)
.+..+++||++++|++++|+||||||||||+++|+ |+++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 45789999999999999999999999999999999 9864
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=99.09 E-value=3.6e-11 Score=118.74 Aligned_cols=114 Identities=16% Similarity=0.255 Sum_probs=81.1
Q ss_pred eeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHHHHHHH
Q 044030 61 DLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSA 140 (449)
Q Consensus 61 ~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~ 140 (449)
.+++..++|++++|+|||||||||++..|++.+.+. .|+|.+.+.+.. + . ...
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~---g~kV~lv~~D~~---r-~-------------~a~------- 148 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE---GKSVVLAAADTF---R-A-------------AAI------- 148 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECTT---C-H-------------HHH-------
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc---CCEEEEEccccc---c-H-------------HHH-------
Confidence 355667899999999999999999999999988652 567776654321 0 0 001
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHH---HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH
Q 044030 141 QLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRV---SISIEILTRPKLLFLDEPTSGLDSAASYYVMS 217 (449)
Q Consensus 141 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv---~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~ 217 (449)
+....+.+.+|+.. +...|||+.+++ ++++++..+|+++|+|||.. ......+++
T Consensus 149 --------------eqL~~~~~~~gl~~-----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~ 206 (306)
T 1vma_A 149 --------------EQLKIWGERVGATV-----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLME 206 (306)
T ss_dssp --------------HHHHHHHHHHTCEE-----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHH
T ss_pred --------------HHHHHHHHHcCCcE-----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHH
Confidence 11234455566643 345689999999 89999999999999999974 344556666
Q ss_pred HHHHHH
Q 044030 218 RIAKLG 223 (449)
Q Consensus 218 ~l~~l~ 223 (449)
.|+.+.
T Consensus 207 eL~~l~ 212 (306)
T 1vma_A 207 ELRKVH 212 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666654
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=7.4e-10 Score=108.78 Aligned_cols=119 Identities=19% Similarity=0.105 Sum_probs=82.8
Q ss_pred eeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHHHHHH
Q 044030 60 EDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYS 139 (449)
Q Consensus 60 ~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~ 139 (449)
++++++ +|++++|+|+||+||||++..|+|.+.+ ..|+|.+.+.+.... + ++ +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~---~~~~v~l~~~d~~~~----~------------~~-~ql--- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG---KGRRPLLVAADTQRP----A------------AR-EQL--- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHH---TTCCEEEEECCSSCH----H------------HH-HHH---
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHH---cCCeEEEecCCcccH----h------------HH-HHH---
Confidence 788888 9999999999999999999999998865 257787766542110 0 00 000
Q ss_pred HhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCC-CCCCCHHHHHHHHHH
Q 044030 140 AQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEP-TSGLDSAASYYVMSR 218 (449)
Q Consensus 140 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEP-tsgLD~~~~~~i~~~ 218 (449)
..+.+..|+.-.... ..-+-.+.+|.+|+.+...+++++|+||| ++++|......+.+.
T Consensus 146 ------------------~~~~~~~~l~~~~~~--~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~ 205 (295)
T 1ls1_A 146 ------------------RLLGEKVGVPVLEVM--DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARL 205 (295)
T ss_dssp ------------------HHHHHHHTCCEEECC--TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHH
T ss_pred ------------------HHhcccCCeEEEEcC--CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHH
Confidence 012233444322110 11233455788999988899999999999 999999888888887
Q ss_pred HHHHH
Q 044030 219 IAKLG 223 (449)
Q Consensus 219 l~~l~ 223 (449)
.+.+.
T Consensus 206 ~~~~~ 210 (295)
T 1ls1_A 206 KEVLG 210 (295)
T ss_dssp HHHHC
T ss_pred hhhcC
Confidence 77664
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=99.03 E-value=3.7e-12 Score=137.11 Aligned_cols=161 Identities=14% Similarity=0.129 Sum_probs=103.8
Q ss_pred cccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCC---------
Q 044030 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDD--------- 124 (449)
Q Consensus 54 ~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~--------- 124 (449)
|...+++++++.+.+|+.++|+||||+|||||+++|+|.+++. .-|.+.+++.+.......++|+|+..
T Consensus 45 G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~--~~~~~~~~~~~~~~~~p~i~~~p~g~~~~~~e~~~ 122 (604)
T 3k1j_A 45 GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE--TLEDILVFPNPEDENMPRIKTVPACQGRRIVEKYR 122 (604)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS--SCEEEEEECCTTCTTSCEEEEEETTHHHHHHHHHH
T ss_pred CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc--cCCeEEEeCCcccccCCcEEEEecchHHHHHHHHH
Confidence 5677999999999999999999999999999999999998763 34888888876544345688887653
Q ss_pred -------------CCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHH
Q 044030 125 -------------TLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEI 191 (449)
Q Consensus 125 -------------~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL 191 (449)
..+..+++.+|+.....-..+...- .+ .....-+.+|.-+......+++|+|++|++..+...
T Consensus 123 ~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v-~~---~~~~~~~L~G~~~~~~~~~g~~~~g~~~~i~~g~~~ 198 (604)
T 3k1j_A 123 EKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFI-DA---TGAHAGALLGDVRHDPFQSGGLGTPAHERVEPGMIH 198 (604)
T ss_dssp HHHHHHTCC-----------CCCEEEECCTTCSSCCEE-EC---TTCCHHHHHCEECCCCC----CCCCGGGGEECCHHH
T ss_pred HhhccchhhhhhcccccccccccceeeccccCCCCCEE-Ec---CCCCHHhcCceEEechhhcCCccccccccccCceee
Confidence 1112222222221100000000000 00 000111223332222233478999999999999999
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 044030 192 LTRPKLLFLDEPTSGLDSAASYYVMSRIAK 221 (449)
Q Consensus 192 ~~~P~llllDEPtsgLD~~~~~~i~~~l~~ 221 (449)
..++.+||+||... |++..+..+.+.|.+
T Consensus 199 ~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 199 RAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred ecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999988 899999888888874
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=6.4e-11 Score=123.50 Aligned_cols=51 Identities=16% Similarity=0.091 Sum_probs=47.0
Q ss_pred cceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec
Q 044030 56 SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKK 110 (449)
Q Consensus 56 ~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~ 110 (449)
..+|+|+||++++ ++++|+|||||||||||++|+|+++|. +|+|.++|.+.
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~ 67 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPD---LTLLNFRNTTE 67 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCC---TTTCCCCCTTS
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEEc
Confidence 3589999999999 999999999999999999999999874 89999999754
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=4.8e-10 Score=110.18 Aligned_cols=144 Identities=15% Similarity=0.216 Sum_probs=89.7
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCC
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPD 146 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~ 146 (449)
++|++++|+|||||||||+++.|++.+.+. +| +.+.++.++.. ..++.|.+...+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~---~G-------------~~V~lv~~D~~---r~~a~eqL~~~~~----- 158 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLE---KH-------------KKIAFITTDTY---RIAAVEQLKTYAE----- 158 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHT---TC-------------CCEEEEECCCS---STTHHHHHHHHHT-----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHh---cC-------------CEEEEEecCcc---cchHHHHHHHHHH-----
Confidence 479999999999999999999999987542 34 23566766652 2356666654322
Q ss_pred CCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhc
Q 044030 147 TMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRD 226 (449)
Q Consensus 147 ~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~ 226 (449)
.+|+.... ..+. ..-+.+++ .+.+|+++|+| |+|+|+.....+.++.+-+....
T Consensus 159 ----------------~~gl~~~~-----~~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~ 212 (296)
T 2px0_A 159 ----------------LLQAPLEV-----CYTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKETIPFES 212 (296)
T ss_dssp ----------------TTTCCCCB-----CSSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCT
T ss_pred ----------------hcCCCeEe-----cCCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcC
Confidence 12221110 0122 22344555 45999999999 99999876655554443332100
Q ss_pred CCCeEEEE-EecCCcHHHHhhcCeEEEeeCCeEEEe
Q 044030 227 GIGRTIIA-SIHQPSSEVFQLFHNLCLLSAGQTVYF 261 (449)
Q Consensus 227 g~g~tii~-~tH~~~~~i~~~~D~v~~l~~G~iv~~ 261 (449)
..+.++++ ++|.. .++.+.++++..+..+.++..
T Consensus 213 ~~~~~lVl~at~~~-~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 213 SIQSFLVLSATAKY-EDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp TEEEEEEEETTBCH-HHHHHHTTTTSSSCCCEEEEE
T ss_pred CCeEEEEEECCCCH-HHHHHHHHHHhcCCCCEEEEe
Confidence 10224444 48874 578888888776777777764
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.00 E-value=7.3e-12 Score=115.14 Aligned_cols=67 Identities=27% Similarity=0.348 Sum_probs=45.7
Q ss_pred eEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----ccCcEEEEcCCCCCCCCCCHHHHH
Q 044030 63 TGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-----AYGTSAYVTQDDTLITTLTVKEAV 136 (449)
Q Consensus 63 s~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-----~~~~i~yv~Q~~~l~~~lTv~e~l 136 (449)
|+++++|++++|+||||||||||+++|+|+.+ .+.+++..... ....++|++|++..++.+++.+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA-------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAF 72 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS-------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC-------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcE
Confidence 56788999999999999999999999999852 35555543211 123578999987666655555443
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=99.00 E-value=4.2e-10 Score=113.13 Aligned_cols=156 Identities=17% Similarity=0.198 Sum_probs=90.3
Q ss_pred ceeeeee--EEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHH
Q 044030 57 SILEDLT--GYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKE 134 (449)
Q Consensus 57 ~iL~~vs--~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e 134 (449)
.-|+.+- +-+++|+++.|.||||||||||+..++...... .| .+.|+.-+..+-+
T Consensus 47 ~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~---g~--------------~vlyi~~E~~~~~------ 103 (349)
T 2zr9_A 47 ISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAA---GG--------------IAAFIDAEHALDP------ 103 (349)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT---TC--------------CEEEEESSCCCCH------
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhC---CC--------------eEEEEECCCCcCH------
Confidence 3455543 478999999999999999999988887643210 11 2345444322110
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhC--CCEEEEeCCCCCC-----
Q 044030 135 AVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTR--PKLLFLDEPTSGL----- 207 (449)
Q Consensus 135 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~--P~llllDEPtsgL----- 207 (449)
. ++.+ +|+....-......+. .+-+.++++++.+ |+++++|||++.+
T Consensus 104 ~--~a~~----------------------lG~~~~~l~i~~~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~ 157 (349)
T 2zr9_A 104 E--YAKK----------------------LGVDTDSLLVSQPDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEI 157 (349)
T ss_dssp H--HHHH----------------------TTCCGGGCEEECCSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHH
T ss_pred H--HHHH----------------------cCCCHHHeEEecCCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhh
Confidence 0 1111 1111000000011222 2345677888755 9999999999988
Q ss_pred -----CH---HHHHHHHHHHHHH---HhhcCCCeEEEEEecCCcH---------------HHHhhcCeEEEeeCCeEEEe
Q 044030 208 -----DS---AASYYVMSRIAKL---GQRDGIGRTIIASIHQPSS---------------EVFQLFHNLCLLSAGQTVYF 261 (449)
Q Consensus 208 -----D~---~~~~~i~~~l~~l---~~~~g~g~tii~~tH~~~~---------------~i~~~~D~v~~l~~G~iv~~ 261 (449)
|+ ..+..+.+.++++ +++.|. |||+++|.... .+..+||.++.++.++++..
T Consensus 158 ~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~--tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~ 235 (349)
T 2zr9_A 158 EGEMGDSHVGLQARLMSQALRKMTGALNNSGT--TAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKD 235 (349)
T ss_dssp TTC----CCCHHHHHHHHHHHHHHHHHHHHTC--EEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECS
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHhCC--EEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeec
Confidence 33 2222344444444 456666 99999996431 25678999999988776555
Q ss_pred cC
Q 044030 262 GP 263 (449)
Q Consensus 262 g~ 263 (449)
|+
T Consensus 236 g~ 237 (349)
T 2zr9_A 236 GT 237 (349)
T ss_dssp SS
T ss_pred Cc
Confidence 54
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.2e-11 Score=129.87 Aligned_cols=164 Identities=15% Similarity=0.091 Sum_probs=97.2
Q ss_pred eeeEEEecCeEEEEECCCCCcHHHHHHHHHc-C-CCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCC--CHHHHH
Q 044030 61 DLTGYAKPGHLLAIMGPSGSGKTTLLDALAG-R-LGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTL--TVKEAV 136 (449)
Q Consensus 61 ~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G-~-~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~l--Tv~e~l 136 (449)
.+++++.++..++|.|++||||||++++|.. + ... ..|++.+.+.+.+.. -++....+|++ +|.++.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~---~p~~v~l~liDpK~~------el~~~~~lPhl~~~Vvtd~ 229 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKA---QPEDVRFIMIDPKML------ELSVYEGIPHLLTEVVTDM 229 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTC---CTTTEEEEEECCSSS------GGGGGTTCTTBSSSCBCSH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhC---CCceEEEEEECCchh------hhhhhccCCcccceeecCH
Confidence 5778889999999999999999999999875 2 222 236666555443210 00110111111 121222
Q ss_pred HHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCc---cCCCCChHHHHHH----------HHHHHHHhCCC-EEEEeC
Q 044030 137 YYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNT---RIRRLSGGQKRRV----------SISIEILTRPK-LLFLDE 202 (449)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~---~~~~LSgGerqRv----------~ia~aL~~~P~-llllDE 202 (449)
..+.... .....+.+++. +++...|+.+..+. ....+|+||+|+. .+++++...|. ++++||
T Consensus 230 ~~a~~~L---~~~~~EmerR~-~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE 305 (512)
T 2ius_A 230 KDAANAL---RWCVNEMERRY-KLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDE 305 (512)
T ss_dssp HHHHHHH---HHHHHHHHHHH-HHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEET
T ss_pred HHHHHHH---HHHHHHHHHHH-HHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeC
Confidence 1111110 01123444553 67888888765432 2246788887752 34556677887 789999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh---hcCCCeEEEEEecCCc
Q 044030 203 PTSGLDSAASYYVMSRIAKLGQ---RDGIGRTIIASIHQPS 240 (449)
Q Consensus 203 PtsgLD~~~~~~i~~~l~~l~~---~~g~g~tii~~tH~~~ 240 (449)
+++-+|.. ...+.+.|.++++ .. |.++|++||+|.
T Consensus 306 ~~~ll~~~-~~~~~~~l~~Lar~gRa~--GI~LIlaTQrp~ 343 (512)
T 2ius_A 306 FADLMMTV-GKKVEELIARLAQKARAA--GIHLVLATQRPS 343 (512)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHCGGG--TEEEEEEESCCC
T ss_pred HHHHHhhh-hHHHHHHHHHHHHHhhhC--CcEEEEEecCCc
Confidence 99988843 3455566665543 33 459999999986
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.91 E-value=4.5e-10 Score=102.43 Aligned_cols=38 Identities=21% Similarity=0.184 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 044030 183 RRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKL 222 (449)
Q Consensus 183 qRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l 222 (449)
+.+.+|++++.+|+++++| ||++|......+++.|.+.
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 3477899999999999999 9999999999999988653
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.87 E-value=1.1e-12 Score=127.35 Aligned_cols=123 Identities=15% Similarity=0.207 Sum_probs=82.7
Q ss_pred ccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----ccCcEEEEcCCCC-CCC
Q 044030 55 SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-----AYGTSAYVTQDDT-LIT 128 (449)
Q Consensus 55 ~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-----~~~~i~yv~Q~~~-l~~ 128 (449)
...+++++++.+++| ++|+||||||||||+++|++... .|.|.+++.+... ..+.+++++|... ..+
T Consensus 61 ~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 133 (278)
T 1iy2_A 61 NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAP 133 (278)
T ss_dssp CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCS
T ss_pred CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCC
Confidence 346899999999999 99999999999999999999763 6889998864311 1123567777643 456
Q ss_pred CCCHHHHHHHHHhccCC-CCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCE
Q 044030 129 TLTVKEAVYYSAQLQLP-DTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKL 197 (449)
Q Consensus 129 ~lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~l 197 (449)
.+++.|++......+.. ......+..+.+.+++ ..|||||+||+.+++++..+|++
T Consensus 134 ~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll-------------~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 134 CIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL-------------VEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EEEEEETHHHHHCC--------CHHHHHHHHHHH-------------HHHTTCCTTCCEEEEEEESCTTS
T ss_pred cEEehhhhHhhhcccccccCCcchHHHHHHHHHH-------------HHHhCCCCCCCEEEEEecCCchh
Confidence 67777777433221100 0001112222333332 35899999999999999999975
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=5.9e-13 Score=127.26 Aligned_cols=127 Identities=16% Similarity=0.223 Sum_probs=83.6
Q ss_pred ccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----ccCcEEEEcCCCC-CCC
Q 044030 55 SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-----AYGTSAYVTQDDT-LIT 128 (449)
Q Consensus 55 ~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-----~~~~i~yv~Q~~~-l~~ 128 (449)
...+++++++.+++| ++|+||||||||||+++|++... .|.|.++|.+... ..+.+++++|... ..+
T Consensus 37 ~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 109 (254)
T 1ixz_A 37 NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAP 109 (254)
T ss_dssp CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSS
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCC
Confidence 346899999999999 99999999999999999999763 5889998864311 1123566777643 456
Q ss_pred CCCHHHHHHHHHhccCC-CCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCC
Q 044030 129 TLTVKEAVYYSAQLQLP-DTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEP 203 (449)
Q Consensus 129 ~lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEP 203 (449)
.+++.|++......+.. ......+..+.+.+++ ..|||||+||+.+++++..+|++ +|++
T Consensus 110 ~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll-------------~~l~g~~~~~~~i~~a~t~~p~~--ld~~ 170 (254)
T 1ixz_A 110 CIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL-------------VEMDGFEKDTAIVVMAATNRPDI--LDPA 170 (254)
T ss_dssp EEEEEETHHHHHC---------CHHHHHHHHHHH-------------HHHHTCCTTCCEEEEEEESCGGG--SCGG
T ss_pred eEEEehhhhhhhcccCccccccchHHHHHHHHHH-------------HHHhCCCCCCCEEEEEccCCchh--CCHH
Confidence 66777777433211100 0001122223333333 35789999999999999999976 4543
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.72 E-value=3.4e-10 Score=107.00 Aligned_cols=58 Identities=19% Similarity=0.145 Sum_probs=40.2
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKK 110 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~ 110 (449)
..|+++|++.. . +. ++++.+ ++++|+|||||||||||++|+|++.|. +|+|.++|.+.
T Consensus 8 ~~l~l~~~~~~-~-----~~-------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~---~G~i~~~g~~~ 65 (227)
T 1qhl_A 8 RSLTLINWNGF-F-----AR-------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPD---LTLLHFRNTTE 65 (227)
T ss_dssp EEEEEEEETTE-E-----EE-------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCC---TTTC-------
T ss_pred eEEEEEeeecc-c-----CC-------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccC---CCeEEECCEEc
Confidence 35677777543 1 11 456666 899999999999999999999999774 89999998754
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=9.6e-09 Score=93.84 Aligned_cols=37 Identities=22% Similarity=0.190 Sum_probs=32.4
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 044030 185 VSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLG 223 (449)
Q Consensus 185 v~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~ 223 (449)
...|++++.+|++.++| ||++|......+++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999998887654
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.66 E-value=1.7e-11 Score=124.48 Aligned_cols=139 Identities=15% Similarity=0.077 Sum_probs=83.4
Q ss_pred cceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCC-CCCCCCHHH
Q 044030 56 SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDT-LITTLTVKE 134 (449)
Q Consensus 56 ~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~-l~~~lTv~e 134 (449)
..+|+++|+.+++|++++|+||||||||||+++|+|.. .|.+..-+.+.......+++++|... ++.+++...
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~------~g~~~~~~~~~~~~~~~lg~~~q~~~~l~dd~~~~~ 229 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC------GGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTG 229 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH------CCEEECCSSCTTTHHHHHGGGTTCSCEEETTCCCST
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc------CCcEEEEeccchhHHHHHHHhcchhHHHHHHHHHHH
Confidence 46899999999999999999999999999999999953 57776522111110112556666543 233332211
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHHH---cCCc-------------hhhCccCCCCChHHHHHHHHHHHHHhCCCEE
Q 044030 135 AVYYSAQLQLPDTMPKSDKKERAEVTIRE---MGLQ-------------DAMNTRIRRLSGGQKRRVSISIEILTRPKLL 198 (449)
Q Consensus 135 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~---lgL~-------------~~~~~~~~~LSgGerqRv~ia~aL~~~P~ll 198 (449)
.+ ...+. .. ........+...++- +.++ ...+.....+++|+++|+..+.+++..|+++
T Consensus 230 ~~--~r~l~--~~-~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLl 304 (377)
T 1svm_A 230 GE--SRDLP--SG-QGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLK 304 (377)
T ss_dssp TT--TTTCC--CC-SHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHH
T ss_pred HH--Hhhcc--cc-CcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeE
Confidence 10 00000 00 000001112222320 0011 1234556789999999999888888999988
Q ss_pred E-EeCCCC
Q 044030 199 F-LDEPTS 205 (449)
Q Consensus 199 l-lDEPts 205 (449)
+ ||+|+.
T Consensus 305 iyLd~~~~ 312 (377)
T 1svm_A 305 HCLERSEF 312 (377)
T ss_dssp HHHHTCTH
T ss_pred EEEeCCHH
Confidence 7 999987
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.62 E-value=3.5e-09 Score=106.97 Aligned_cols=149 Identities=19% Similarity=0.265 Sum_probs=86.8
Q ss_pred cCeE-EEEECCCCCcHHHHHHHHHcCCCCC--------CCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHH---H
Q 044030 68 PGHL-LAIMGPSGSGKTTLLDALAGRLGSD--------TRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKE---A 135 (449)
Q Consensus 68 ~Ge~-~~IlGpnGaGKSTLL~~l~G~~~~~--------~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e---~ 135 (449)
.|-. ++|+|++|||||||+|.|+|..... .+..|.|.++|.+.... ...|++.+.+. ..|.. .
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~-DT~G~i~~lp~----~lve~f~~t 251 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLV-DTVGFIRGIPP----QIVDAFFVT 251 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEE-ECCCBCSSCCG----GGHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEE-eCCCchhcCCH----HHHHHHHHH
Confidence 3444 9999999999999999999976421 03578999998653211 12344433221 11211 1
Q ss_pred HHHHHh----ccC-CCCCCH---HHHHHHHHHHHHHcCCchhh----CccCCCCChHHHHHHHHH----HHH-HhCCCEE
Q 044030 136 VYYSAQ----LQL-PDTMPK---SDKKERAEVTIREMGLQDAM----NTRIRRLSGGQKRRVSIS----IEI-LTRPKLL 198 (449)
Q Consensus 136 l~~~~~----~~~-~~~~~~---~~~~~~v~~~l~~lgL~~~~----~~~~~~LSgGerqRv~ia----~aL-~~~P~ll 198 (449)
+..... +.. ...... .+..+.+.++++.+++.+.. ..++..+|+|+++|+.++ +++ ..+|++
T Consensus 252 l~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~- 330 (364)
T 2qtf_A 252 LSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV- 330 (364)
T ss_dssp HHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE-
T ss_pred HHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE-
Confidence 111000 000 000111 12223456778887765432 344567898898988887 444 334444
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhh
Q 044030 199 FLDEPTSGLDSAASYYVMSRIAKLGQR 225 (449)
Q Consensus 199 llDEPtsgLD~~~~~~i~~~l~~l~~~ 225 (449)
+|+|++|......+.+.|.++...
T Consensus 331 ---~~~SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 331 ---IPISALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp ---EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred ---EEEECCCCcCHHHHHHHHHHHhcc
Confidence 899999999999999999887644
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.8e-08 Score=101.28 Aligned_cols=38 Identities=29% Similarity=0.309 Sum_probs=31.6
Q ss_pred ceeeeee--EEEecCeEEEEECCCCCcHHHHHHHHHcCCC
Q 044030 57 SILEDLT--GYAKPGHLLAIMGPSGSGKTTLLDALAGRLG 94 (449)
Q Consensus 57 ~iL~~vs--~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~ 94 (449)
.-|+.+- +=+++|+++.|.||||||||||+..+++...
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~ 86 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQ 86 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4455543 3799999999999999999999999998653
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.5e-09 Score=99.81 Aligned_cols=41 Identities=29% Similarity=0.390 Sum_probs=32.3
Q ss_pred eEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec
Q 044030 63 TGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKK 110 (449)
Q Consensus 63 s~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~ 110 (449)
.+..++|++++|+||||||||||+++|+|.+ |.+.++|.+.
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-------g~~~i~~d~~ 63 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET-------GLEFAEADAF 63 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH-------CCEEEEGGGG
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh-------CCeEEccccc
Confidence 3566799999999999999999999999964 7888888654
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.53 E-value=7.4e-08 Score=96.80 Aligned_cols=125 Identities=12% Similarity=0.100 Sum_probs=79.3
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDT 147 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~ 147 (449)
..-.++|+|+||+|||||++.|+|.... .| +.+.......++.+.++.. .+
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~----~~-----~~~~~t~~~~~~~~~~~~~---------------~~----- 216 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKPE----IA-----SYPFTTRGINVGQFEDGYF---------------RY----- 216 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCCE----EE-----CCTTCSSCEEEEEEEETTE---------------EE-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc----cC-----CCCCeeeceeEEEEEecCc---------------eE-----
Confidence 4457999999999999999999986411 11 1111111112333333211 00
Q ss_pred CCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhhc
Q 044030 148 MPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLD-EPTSGLDSAASYYVMSRIAKLGQRD 226 (449)
Q Consensus 148 ~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllD-EPtsgLD~~~~~~i~~~l~~l~~~~ 226 (449)
..++.....+..+..+|+|++|++. +.+...++-++++| +|.+|+|......+++.+.....
T Consensus 217 --------------~l~Dt~G~~~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-- 279 (357)
T 2e87_A 217 --------------QIIDTPGLLDRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-- 279 (357)
T ss_dssp --------------EEEECTTTSSSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--
T ss_pred --------------EEEeCCCccccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--
Confidence 0011112223456678999998876 55556777889999 99999999998888888777642
Q ss_pred CCCeEEEEEe--cCCc
Q 044030 227 GIGRTIIASI--HQPS 240 (449)
Q Consensus 227 g~g~tii~~t--H~~~ 240 (449)
+. ++|++. ||..
T Consensus 280 ~~--piilV~NK~Dl~ 293 (357)
T 2e87_A 280 DL--PFLVVINKIDVA 293 (357)
T ss_dssp TS--CEEEEECCTTTC
T ss_pred CC--CEEEEEECcccC
Confidence 34 788888 7753
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.53 E-value=7.7e-08 Score=100.35 Aligned_cols=113 Identities=22% Similarity=0.400 Sum_probs=73.8
Q ss_pred ceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHHH
Q 044030 57 SILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAV 136 (449)
Q Consensus 57 ~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l 136 (449)
..++++++.+++| +.|.||+|+|||||+++|++..... -+.+++.+ +. .
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~~-----f~~is~~~----------------~~-~------- 87 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANVP-----FFHISGSD----------------FV-E------- 87 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTCC-----EEEEEGGG----------------TT-T-------
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCCC-----eeeCCHHH----------------HH-H-------
Confidence 3566777778887 8899999999999999999854210 01111100 00 0
Q ss_pred HHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCC----------CCC
Q 044030 137 YYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEP----------TSG 206 (449)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEP----------tsg 206 (449)
.. ++ .|+++.|..++.|....|.+||+||+ ++|
T Consensus 88 -----~~------------------------------~g--~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g 130 (476)
T 2ce7_A 88 -----LF------------------------------VG--VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGG 130 (476)
T ss_dssp -----CC------------------------------TT--HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC-------
T ss_pred -----HH------------------------------hc--ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCc
Confidence 00 00 26778888899999999999999999 346
Q ss_pred CCHHHHHHHHHHHHHHH---hhcCCCeEEEEEecCC
Q 044030 207 LDSAASYYVMSRIAKLG---QRDGIGRTIIASIHQP 239 (449)
Q Consensus 207 LD~~~~~~i~~~l~~l~---~~~g~g~tii~~tH~~ 239 (449)
.|......+.+++..+- ... +..||.+||+|
T Consensus 131 ~~~~~~~~l~~LL~~ld~~~~~~--~viVIaaTn~~ 164 (476)
T 2ce7_A 131 GHDEREQTLNQLLVEMDGFDSKE--GIIVMAATNRP 164 (476)
T ss_dssp --CHHHHHHHHHHHHHHHSCGGG--TEEEEEEESCG
T ss_pred CcHHHHHHHHHHHHHHhccCCCC--CEEEEEecCCh
Confidence 77766666666666663 223 45899999996
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=98.49 E-value=1e-07 Score=95.18 Aligned_cols=132 Identities=18% Similarity=0.178 Sum_probs=87.6
Q ss_pred cceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHH
Q 044030 56 SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEA 135 (449)
Q Consensus 56 ~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~ 135 (449)
..-|+.+..-+.+|+++.|.|++|+|||||+..++..... .| ..+.|+.= .++..+.
T Consensus 33 ~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~----------~g-------~~Vl~fSl------Ems~~ql 89 (338)
T 4a1f_A 33 FVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN----------DD-------RGVAVFSL------EMSAEQL 89 (338)
T ss_dssp CHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH----------TT-------CEEEEEES------SSCHHHH
T ss_pred ChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----------cC-------CeEEEEeC------CCCHHHH
Confidence 4567777778999999999999999999999888764311 11 12344331 2333332
Q ss_pred HHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHH
Q 044030 136 VYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYV 215 (449)
Q Consensus 136 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i 215 (449)
. .+.......+++.+..+ +.||.++.+|+..|...+.++++++.|+|... ...|
T Consensus 90 ~------------------~Rlls~~~~v~~~~l~~---g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i~~i 143 (338)
T 4a1f_A 90 A------------------LRALSDLTSINMHDLES---GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----IEQI 143 (338)
T ss_dssp H------------------HHHHHHHHCCCHHHHHH---TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----HHHH
T ss_pred H------------------HHHHHHhhCCCHHHHhc---CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----HHHH
Confidence 2 22222222223333322 47999999999999999999999999998654 3367
Q ss_pred HHHHHHHHhhcCCCeEEEEEec
Q 044030 216 MSRIAKLGQRDGIGRTIIASIH 237 (449)
Q Consensus 216 ~~~l~~l~~~~g~g~tii~~tH 237 (449)
...++++.++.| |..+|++-|
T Consensus 144 ~~~ir~l~~~~g-g~~lIVIDy 164 (338)
T 4a1f_A 144 RLQLRKLKSQHK-ELGIAFIDY 164 (338)
T ss_dssp HHHHHHHHHHCT-TEEEEEEEE
T ss_pred HHHHHHHHHhcC-CCCEEEEec
Confidence 777777776652 237777754
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=98.46 E-value=2e-07 Score=103.00 Aligned_cols=76 Identities=20% Similarity=0.255 Sum_probs=59.7
Q ss_pred CccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhhcCCCeEEEEE-ecCCcHHHHhhcC
Q 044030 171 NTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTS-GLDSAASYYVMSRIAKLGQRDGIGRTIIAS-IHQPSSEVFQLFH 248 (449)
Q Consensus 171 ~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPts-gLD~~~~~~i~~~l~~l~~~~g~g~tii~~-tH~~~~~i~~~~D 248 (449)
+..+.-+|.|+.+|..++..++.+++++++|||.. +||......+++.+..... . ..+|++| ||++ ..+.++++
T Consensus 185 ~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~-~--~~iIl~SAT~~~-~~l~~~~~ 260 (773)
T 2xau_A 185 KTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRP-D--LKIIIMSATLDA-EKFQRYFN 260 (773)
T ss_dssp TCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCT-T--CEEEEEESCSCC-HHHHHHTT
T ss_pred CCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCC-C--ceEEEEeccccH-HHHHHHhc
Confidence 45567789999999999999999999999999996 9998877777776665542 2 3477775 9986 56777777
Q ss_pred eE
Q 044030 249 NL 250 (449)
Q Consensus 249 ~v 250 (449)
..
T Consensus 261 ~~ 262 (773)
T 2xau_A 261 DA 262 (773)
T ss_dssp SC
T ss_pred CC
Confidence 53
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.46 E-value=1.1e-07 Score=85.56 Aligned_cols=38 Identities=32% Similarity=0.405 Sum_probs=34.1
Q ss_pred cee--eeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 044030 57 SIL--EDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGS 95 (449)
Q Consensus 57 ~iL--~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~ 95 (449)
..+ +++++.+.+| +++|+||||||||||+++|++.+.+
T Consensus 13 ~~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 13 KSYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp GGGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred EeecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 356 7899999999 9999999999999999999998754
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.4e-08 Score=97.39 Aligned_cols=52 Identities=31% Similarity=0.406 Sum_probs=36.2
Q ss_pred eEEEEee-EEEEeecCcccccceeeeeeEEEec---CeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 37 FLTWKDL-TVTIVSNGKKGSSSILEDLTGYAKP---GHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 37 ~l~~~nl-s~~~~~~~~~~~~~iL~~vs~~i~~---Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.++++|+ ++.| . +...+|+|+||++++ |++++|+|++||||||+.++|++.+
T Consensus 17 ~l~~~~~~~~~~-~----~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPF-D----EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp --------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEe-c----CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 9873 1 346799999999999 9999999999999999999999865
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.9e-09 Score=113.11 Aligned_cols=128 Identities=16% Similarity=0.207 Sum_probs=83.9
Q ss_pred cceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc-----cCcEEEEcCCCC-CCCC
Q 044030 56 SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA-----YGTSAYVTQDDT-LITT 129 (449)
Q Consensus 56 ~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~-----~~~i~yv~Q~~~-l~~~ 129 (449)
..+++++++.+++| +.|+||||+|||||+++|+|... .|.+.++|.+.... .+.+.+++|... ..|.
T Consensus 53 ~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~ 125 (499)
T 2dhr_A 53 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 125 (499)
T ss_dssp GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSC
T ss_pred hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCC
Confidence 45788999999999 99999999999999999999763 57888888653211 123455666643 3445
Q ss_pred CCHHHHHHHHHhccCC-CCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 044030 130 LTVKEAVYYSAQLQLP-DTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTS 205 (449)
Q Consensus 130 lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPts 205 (449)
+.+.+++......+.. ......+..+.+.+++. .||||++|+..|+++..++|++ |||+.-
T Consensus 126 il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~-------------~Ldg~~~~~~viviAatn~p~~--LD~aLl 187 (499)
T 2dhr_A 126 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV-------------EMDGFEKDTAIVVMAATNRPDI--LDPALL 187 (499)
T ss_dssp EEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH-------------HGGGCCSSCCCEEEECCSCGGG--SCTTTS
T ss_pred EEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHH-------------HhcccccCccEEEEEecCChhh--cCcccc
Confidence 5555555322111100 00112233334444443 3689999999999999999987 898864
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.31 E-value=9.6e-08 Score=94.73 Aligned_cols=76 Identities=18% Similarity=0.142 Sum_probs=55.3
Q ss_pred eeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----------c---cCcEEEE-cCC
Q 044030 59 LEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL-----------A---YGTSAYV-TQD 123 (449)
Q Consensus 59 L~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~-----------~---~~~i~yv-~Q~ 123 (449)
+++++|.+++|++++|+||||+||||++..|++.+.+ ..|+|.+.+.+... . ...+.++ +|.
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~---~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~ 171 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAE---LGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANK 171 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHH---TTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSS
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCC
Confidence 4789999999999999999999999999999998865 36889887755310 0 3357888 665
Q ss_pred CCCCCCCCHHHHHH
Q 044030 124 DTLITTLTVKEAVY 137 (449)
Q Consensus 124 ~~l~~~lTv~e~l~ 137 (449)
....|..++.+++.
T Consensus 172 ~~~~p~~~~~~~l~ 185 (320)
T 1zu4_A 172 LNADPASVVFDAIK 185 (320)
T ss_dssp TTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 44444434444443
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=2e-06 Score=86.24 Aligned_cols=171 Identities=15% Similarity=0.113 Sum_probs=80.8
Q ss_pred cceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcC--CCCCCCceeEEEECCEecc-----cccCcEEEEcCCCC-CC
Q 044030 56 SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGR--LGSDTRQTGKILINGHKKA-----LAYGTSAYVTQDDT-LI 127 (449)
Q Consensus 56 ~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~--~~~~~~~~G~I~~~g~~~~-----~~~~~i~yv~Q~~~-l~ 127 (449)
..+|++++++++ .++|+|++|||||||++.|+|. ++.+ +|.++-...... ......+...+.+. .+
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~---~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~ 97 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRG---SGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKF 97 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCC---SSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCB
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCC---CCcccCcceEEEEecCCCcccceeeeecCCCccc
Confidence 468999999998 8999999999999999999994 3332 444432222110 01122333333221 11
Q ss_pred CCC-CHHHHHHHHHhccCC--CCCCHHHHHHHHHHHHHHcCCchhhCccC-------CCCChHHHHHHHHHHHHHhCCCE
Q 044030 128 TTL-TVKEAVYYSAQLQLP--DTMPKSDKKERAEVTIREMGLQDAMNTRI-------RRLSGGQKRRVSISIEILTRPKL 197 (449)
Q Consensus 128 ~~l-Tv~e~l~~~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~~~~~~~-------~~LSgGerqRv~ia~aL~~~P~l 197 (449)
.+. .+.+.+.-......+ .+.+.......+.. -....+ ...|++. ...++.++++..+++..+.+|++
T Consensus 98 ~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~-~~~~~l-~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~ 175 (360)
T 3t34_A 98 TDFAAVRKEIQDETDRETGRSKAISSVPIHLSIYS-PNVVNL-TLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNC 175 (360)
T ss_dssp SCHHHHHHHHHHHHHHTSCTTCCCCCSCEEEEEEE-TTSCSE-EEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSE
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCcccceEEEEEeC-CCCCCe-EEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCe
Confidence 110 111111100000000 00000000000000 000000 1123332 23567889999999999999998
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEec
Q 044030 198 LFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIH 237 (449)
Q Consensus 198 lllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH 237 (449)
+++.-..+..|... ...+++++.+... |. .+|++.+.
T Consensus 176 iilvv~~~~~~~~~-~~~~~l~~~~~~~-~~-~~i~V~nK 212 (360)
T 3t34_A 176 IILAISPANQDLAT-SDAIKISREVDPS-GD-RTFGVLTK 212 (360)
T ss_dssp EEEEEEETTSCGGG-CHHHHHHHHSCTT-CT-TEEEEEEC
T ss_pred EEEEeecccCCcCC-HHHHHHHHHhccc-CC-CEEEEEeC
Confidence 87774333445433 4456666766533 32 37777765
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=2.6e-08 Score=91.54 Aligned_cols=53 Identities=32% Similarity=0.417 Sum_probs=43.5
Q ss_pred cccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEE--EECCEec
Q 044030 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKI--LINGHKK 110 (449)
Q Consensus 54 ~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I--~~~g~~~ 110 (449)
+.....+.+++..++|++++|+||||||||||+++|++.+. ..|.+ +++|.+.
T Consensus 10 ~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~----~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 10 CSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY----QKGKLCYILDGDNV 64 (200)
T ss_dssp CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH----HTTCCEEEEEHHHH
T ss_pred cccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH----hcCceEEEecCchh
Confidence 44567778888889999999999999999999999999874 25766 7777543
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=98.27 E-value=1e-06 Score=86.44 Aligned_cols=67 Identities=9% Similarity=0.063 Sum_probs=48.2
Q ss_pred CChHHHHHHHHHHHHH--hCCCEEEEeCCCCCCCHHH-HHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEE
Q 044030 177 LSGGQKRRVSISIEIL--TRPKLLFLDEPTSGLDSAA-SYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLC 251 (449)
Q Consensus 177 LSgGerqRv~ia~aL~--~~P~llllDEPtsgLD~~~-~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~ 251 (449)
+|+|++ .++..+. ..|.++++ +.+|... ...+.+.+.++++..|....+.+++|+- ..+..++|.+.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g-~~v~~l~~~i~ 170 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETG-LNVDTIAAIVR 170 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTT-TTHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCC-CCHHHHHHHHH
Confidence 898886 4566666 68999998 7899876 6778888888876544223667777774 45777777654
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.26 E-value=4.2e-07 Score=83.04 Aligned_cols=32 Identities=28% Similarity=0.404 Sum_probs=27.4
Q ss_pred EEEecCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 044030 64 GYAKPGHLLAIMGPSGSGKTTLLDALAGRLGS 95 (449)
Q Consensus 64 ~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~ 95 (449)
+++.+|++++|+||||||||||+++|++.+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 36789999999999999999999999998854
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.26 E-value=2.4e-07 Score=85.04 Aligned_cols=127 Identities=14% Similarity=0.187 Sum_probs=70.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCH
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPK 150 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~ 150 (449)
+++|+|||||||||+.++|+++ |...+++.... + ....+ +
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l--------g~~~id~d~~~---------------------~-------~~~~~-~--- 43 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL--------GVPLVDADVVA---------------------R-------EVVAK-D--- 43 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT--------TCCEEEHHHHH---------------------H-------HTTCS-S---
T ss_pred EEEEECCCCCCHHHHHHHHHHC--------CCcccchHHHH---------------------H-------HHccC-C---
Confidence 6899999999999999999983 32233321110 0 00000 0
Q ss_pred HHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCe
Q 044030 151 SDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGR 230 (449)
Q Consensus 151 ~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~ 230 (449)
...+.++.+.+|.... .+.|+.+|..++.....+|+.+.++ .+.++|.....+.+.+... .+.
T Consensus 44 ---~~~~~~i~~~~g~~~~-------~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~---~~~-- 106 (206)
T 1jjv_A 44 ---SPLLSKIVEHFGAQIL-------TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ---TAP-- 106 (206)
T ss_dssp ---CHHHHHHHHHHCTTCC-------------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC---CSS--
T ss_pred ---hHHHHHHHHHhCHHHh-------ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc---CCC--
Confidence 0123444555554321 3678889999988888887644332 3455666655555544332 233
Q ss_pred EEEEEecCCcHH-HHhhcCeEEEee
Q 044030 231 TIIASIHQPSSE-VFQLFHNLCLLS 254 (449)
Q Consensus 231 tii~~tH~~~~~-i~~~~D~v~~l~ 254 (449)
++|+.+|...+. +...||.+++++
T Consensus 107 ~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 107 YTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp EEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred EEEEEechhhhcCcHhhCCEEEEEE
Confidence 888888875321 256788888875
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.26 E-value=3.9e-07 Score=83.54 Aligned_cols=40 Identities=33% Similarity=0.282 Sum_probs=24.8
Q ss_pred cccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 54 ~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+...+++||||++++|++++|+||+||||||+.+.|++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 10 GVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3457899999999999999999999999999999999865
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=98.23 E-value=1e-06 Score=87.03 Aligned_cols=135 Identities=16% Similarity=0.195 Sum_probs=86.7
Q ss_pred ccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHH
Q 044030 55 SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKE 134 (449)
Q Consensus 55 ~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e 134 (449)
+..-|+++.+-+++|+++.|.|++|+|||||+..++..... .| ..+.|+.-+ ++..+
T Consensus 54 G~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~----~g-------------~~vl~~slE------~s~~~ 110 (315)
T 3bh0_A 54 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD----ND-------------DVVNLHSLE------MGKKE 110 (315)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT----TT-------------CEEEEEESS------SCHHH
T ss_pred ChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----cC-------------CeEEEEECC------CCHHH
Confidence 34568888777999999999999999999998888753211 11 124444321 34433
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHH
Q 044030 135 AVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYY 214 (449)
Q Consensus 135 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~ 214 (449)
.. .++......+.+.+..+.. ..||.++++|+..|...+.++++++.|+|... ...
T Consensus 111 l~------------------~R~~~~~~~i~~~~l~~~~-~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~-----~~~ 166 (315)
T 3bh0_A 111 NI------------------KRLIVTAGSINAQKIKAAR-RDFASEDWGKLSMAIGEISNSNINIFDKAGQS-----VNY 166 (315)
T ss_dssp HH------------------HHHHHHHTTCCHHHHHSCH-HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----HHH
T ss_pred HH------------------HHHHHHHcCCCHHHHhcCC-CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----HHH
Confidence 32 1111111122222222211 23899999999999999999999999998643 445
Q ss_pred HHHHHHHHHhhcCCCeE--EEEEecC
Q 044030 215 VMSRIAKLGQRDGIGRT--IIASIHQ 238 (449)
Q Consensus 215 i~~~l~~l~~~~g~g~t--ii~~tH~ 238 (449)
+...++++.++.|. . +|++-|-
T Consensus 167 i~~~i~~l~~~~~~--~~~lVVID~l 190 (315)
T 3bh0_A 167 IWSKTRQTKRKNPG--KRVIVMIDYL 190 (315)
T ss_dssp HHHHHHHHHHTSSS--CCEEEEEECG
T ss_pred HHHHHHHHHHhcCC--CCeEEEEeCc
Confidence 66777777666555 6 7777653
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.22 E-value=3.8e-06 Score=83.96 Aligned_cols=46 Identities=9% Similarity=-0.013 Sum_probs=34.4
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCC
Q 044030 193 TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQP 239 (449)
Q Consensus 193 ~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~ 239 (449)
.+|.++++||+... |......+.+.+.++......+.++|+++|++
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 45889999999876 88888888888876653110144899999996
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.21 E-value=4.4e-07 Score=81.92 Aligned_cols=37 Identities=16% Similarity=0.228 Sum_probs=29.9
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEEC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILIN 106 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~ 106 (449)
+|++++|+||||||||||+++|++..++. ..|.|...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~--~~~~i~~t 40 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDR--FAYPIPHT 40 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTT--EECCCCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCcc--EEEeeecc
Confidence 68999999999999999999999987531 35655443
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=1.3e-05 Score=79.24 Aligned_cols=139 Identities=21% Similarity=0.281 Sum_probs=80.1
Q ss_pred EEEecCeEEEEECCCCCcHHHHHHHHHcCC-CCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHHHHHHHhc
Q 044030 64 GYAKPGHLLAIMGPSGSGKTTLLDALAGRL-GSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQL 142 (449)
Q Consensus 64 ~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~-~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~ 142 (449)
+-+++|+++.|.||+|+|||||+..++... .+. ..| |. ...+.|+.-+..+ ...+-......+
T Consensus 102 GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~--~~g-----g~-----~~~vlyi~~e~~~----~~~~l~~~~~~~ 165 (324)
T 2z43_A 102 GGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPP--EKG-----GL-----SGKAVYIDTEGTF----RWERIENMAKAL 165 (324)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCG--GGT-----CC-----SCEEEEEESSSCC----CHHHHHHHHHHT
T ss_pred CCCCCCcEEEEECCCCCCHhHHHHHHHHHHhccc--ccC-----CC-----CCeEEEEECCCCC----CHHHHHHHHHHh
Confidence 568999999999999999999998888642 120 011 10 1234555443322 122222222222
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChH-HHHHHHHHHHHH---hCCCEEEEeCCCCCCCH--------H
Q 044030 143 QLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGG-QKRRVSISIEIL---TRPKLLFLDEPTSGLDS--------A 210 (449)
Q Consensus 143 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgG-erqRv~ia~aL~---~~P~llllDEPtsgLD~--------~ 210 (449)
+... +++++.+-+ ....++. +.+.+..+++++ .+|+++++|+.++-.+. .
T Consensus 166 ----g~~~-------~~~~~~l~~-------~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~ 227 (324)
T 2z43_A 166 ----GLDI-------DNVMNNIYY-------IRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLA 227 (324)
T ss_dssp ----TCCH-------HHHHHTEEE-------EECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHH
T ss_pred ----CCCH-------HHHhccEEE-------EeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHH
Confidence 1111 112222111 1122333 235677777777 67999999999875532 1
Q ss_pred ----HHHHHHHHHHHHHhhcCCCeEEEEEecC
Q 044030 211 ----ASYYVMSRIAKLGQRDGIGRTIIASIHQ 238 (449)
Q Consensus 211 ----~~~~i~~~l~~l~~~~g~g~tii~~tH~ 238 (449)
...+++..|+.++++.+. +||++.|-
T Consensus 228 ~r~~~~~~~l~~L~~la~~~~~--~Vi~~nq~ 257 (324)
T 2z43_A 228 VRQQKLNKHLHQLTRLAEVYDI--AVIITNQV 257 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC--EEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHhCC--EEEEEcce
Confidence 235667778888877766 99998775
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=98.13 E-value=1.5e-05 Score=79.57 Aligned_cols=140 Identities=12% Similarity=0.140 Sum_probs=80.4
Q ss_pred EEEecCeEEEEECCCCCcHHHHHHHHHcCC-CCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHHHHHHHhc
Q 044030 64 GYAKPGHLLAIMGPSGSGKTTLLDALAGRL-GSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQL 142 (449)
Q Consensus 64 ~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~-~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~ 142 (449)
+-+++|+++.|.||+|||||||+..++... .+. ...| . ...+.|+.-+..+ ....-......+
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~-~~gg------~-----~~~vlyi~~E~~~----~~~~l~~~~~~~ 180 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPG-AGGY------P-----GGKIIFIDTENTF----RPDRLRDIADRF 180 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCB-TTTB------C-----CCEEEEEESSSCC----CHHHHHHHHHHT
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHhccc-ccCC------C-----CCeEEEEECCCCC----CHHHHHHHHHHc
Confidence 468999999999999999999999888742 110 0001 0 1234555544322 222222222222
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHH-HHHHHHHHHHH----hCCCEEEEeCCCCCCCHH-------
Q 044030 143 QLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQ-KRRVSISIEIL----TRPKLLFLDEPTSGLDSA------- 210 (449)
Q Consensus 143 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGe-rqRv~ia~aL~----~~P~llllDEPtsgLD~~------- 210 (449)
+... +++++.+-+. ...++.+ .+.+..++.++ .+++++++|+.++-....
T Consensus 181 ----g~~~-------~~~l~~l~~~-------~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~ 242 (343)
T 1v5w_A 181 ----NVDH-------DAVLDNVLYA-------RAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGEL 242 (343)
T ss_dssp ----TCCH-------HHHHHTEEEE-------ECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCH
T ss_pred ----CCCH-------HHHHhceeEe-------ecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccH
Confidence 1111 1223322111 1223333 24455566666 568999999999866432
Q ss_pred -----HHHHHHHHHHHHHhhcCCCeEEEEEecCC
Q 044030 211 -----ASYYVMSRIAKLGQRDGIGRTIIASIHQP 239 (449)
Q Consensus 211 -----~~~~i~~~l~~l~~~~g~g~tii~~tH~~ 239 (449)
....++..|+.++++.|. +||++.|-.
T Consensus 243 ~~r~~~l~~~l~~L~~la~~~~~--~Vi~~nq~~ 274 (343)
T 1v5w_A 243 AERQQKLAQMLSRLQKISEEYNV--AVFVTNQMT 274 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC--EEEEEECC-
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC--EEEEEeece
Confidence 135677778888877766 999888863
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=7.1e-07 Score=83.83 Aligned_cols=42 Identities=24% Similarity=0.209 Sum_probs=35.1
Q ss_pred eeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEec
Q 044030 62 LTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKK 110 (449)
Q Consensus 62 vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~ 110 (449)
-++..++|++++|.|+||||||||+++|+|. .|+|.+.+.+.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~-------~g~v~~~~~~~ 54 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY-------KNDICLLTEPV 54 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG-------TTTEEEECCTH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc-------cCCeEEEecCH
Confidence 3445579999999999999999999999996 47788887653
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=1.1e-06 Score=90.76 Aligned_cols=70 Identities=11% Similarity=0.231 Sum_probs=48.3
Q ss_pred hCCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEE-eeCCeEEEecChh
Q 044030 193 TRPKLLFLDEPTSGLDS-AASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCL-LSAGQTVYFGPAT 265 (449)
Q Consensus 193 ~~P~llllDEPtsgLD~-~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~-l~~G~iv~~g~~~ 265 (449)
.+|++|++||+..-.+. ..+..++..+..+.+ .|. .||+++|.+..++..+.+++.- +..|.++..++++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~-~~~--~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHD-SGK--QIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHT-TTC--EEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHH-CCC--eEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence 48999999999887664 677888899988874 444 9999999865433223333332 4557666666654
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.06 E-value=2e-06 Score=79.47 Aligned_cols=29 Identities=34% Similarity=0.549 Sum_probs=27.0
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRLGS 95 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~ 95 (449)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999998754
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.03 E-value=3e-05 Score=75.02 Aligned_cols=75 Identities=19% Similarity=0.309 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH----------HHHHHHHHHHHHHhh-cCCCeEEEEEecCCc---HHHH
Q 044030 179 GGQKRRVSISIEILTRPKLLFLDEPTSGLDSA----------ASYYVMSRIAKLGQR-DGIGRTIIASIHQPS---SEVF 244 (449)
Q Consensus 179 gGerqRv~ia~aL~~~P~llllDEPtsgLD~~----------~~~~i~~~l~~l~~~-~g~g~tii~~tH~~~---~~i~ 244 (449)
++++.|..++.+...+|.+|++||+.+-++.. ....++..+...... .+.+..||.+|++|. ..+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~ 177 (297)
T 3b9p_A 98 GEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAAL 177 (297)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHH
Confidence 56667777777888899999999998766532 223344444433211 011246788888742 3344
Q ss_pred hhcCeEEEe
Q 044030 245 QLFHNLCLL 253 (449)
Q Consensus 245 ~~~D~v~~l 253 (449)
+-|++.+.+
T Consensus 178 ~R~~~~i~~ 186 (297)
T 3b9p_A 178 RRFTKRVYV 186 (297)
T ss_dssp HHCCEEEEC
T ss_pred hhCCeEEEe
Confidence 456655444
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=98.03 E-value=5.1e-07 Score=86.22 Aligned_cols=62 Identities=23% Similarity=0.179 Sum_probs=43.5
Q ss_pred ceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHH---cCCCCCCCceeEEE--------ECCEeccc------ccCcEEE
Q 044030 57 SILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALA---GRLGSDTRQTGKIL--------INGHKKAL------AYGTSAY 119 (449)
Q Consensus 57 ~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~---G~~~~~~~~~G~I~--------~~g~~~~~------~~~~i~y 119 (449)
.++++.+ ++|++++|+|||||||||++++|+ |+..+ .+|.|. .+|.+... ..+.+++
T Consensus 18 ~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~---d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 91 (252)
T 4e22_A 18 LERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLL---DSGAIYRVLALAALHHQVDISTEEALVPLAAHLDV 91 (252)
T ss_dssp -----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEE---EHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCE
T ss_pred hhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcC---CCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCE
Confidence 3455544 789999999999999999999999 87755 489988 77765421 1234677
Q ss_pred EcCCC
Q 044030 120 VTQDD 124 (449)
Q Consensus 120 v~Q~~ 124 (449)
++|.+
T Consensus 92 ~~~~~ 96 (252)
T 4e22_A 92 RFVSQ 96 (252)
T ss_dssp EEEEE
T ss_pred EEecC
Confidence 77643
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=2.3e-06 Score=76.20 Aligned_cols=35 Identities=31% Similarity=0.600 Sum_probs=29.7
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH 108 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~ 108 (449)
.+|++++|+|||||||||++++|++.+ |.+.+++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-------g~~~i~~d 40 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL-------HAAFLDGD 40 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH-------TCEEEEGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh-------CcEEEeCc
Confidence 468999999999999999999999853 66677664
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=2.1e-06 Score=93.30 Aligned_cols=44 Identities=34% Similarity=0.484 Sum_probs=32.7
Q ss_pred eEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 044030 63 TGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH 108 (449)
Q Consensus 63 s~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~ 108 (449)
|+.+++|..++|+|++|||||||++.|++...+. ...|+| .+|.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~-~~~G~V-~~g~ 46 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAK-ERRGRV-EEGT 46 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSS-SSCCCG-GGTC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCC-Ccccee-cCCc
Confidence 4567889999999999999999999999765431 246777 4554
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.94 E-value=1.4e-06 Score=79.92 Aligned_cols=40 Identities=30% Similarity=0.266 Sum_probs=33.2
Q ss_pred EecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 044030 66 AKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH 108 (449)
Q Consensus 66 i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~ 108 (449)
.++|++++|+|+||||||||+++|++.+.+. .|.|.+.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~---~~~v~~~~~ 58 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQ---GISVCVFHM 58 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEEG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhc---CCeEEEecc
Confidence 5789999999999999999999999987542 577766544
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.93 E-value=7.5e-07 Score=88.27 Aligned_cols=41 Identities=22% Similarity=0.204 Sum_probs=36.4
Q ss_pred cccceeeeeeEEEecCe------EEEEECCCCCcHHHHHHHHHcCCC
Q 044030 54 GSSSILEDLTGYAKPGH------LLAIMGPSGSGKTTLLDALAGRLG 94 (449)
Q Consensus 54 ~~~~iL~~vs~~i~~Ge------~~~IlGpnGaGKSTLL~~l~G~~~ 94 (449)
+....|++++..+.+++ ++||+||||||||||+++|++++.
T Consensus 71 ~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 71 TARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45678888888888877 999999999999999999999875
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=97.92 E-value=5.1e-05 Score=78.32 Aligned_cols=173 Identities=14% Similarity=0.108 Sum_probs=98.9
Q ss_pred cceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHH
Q 044030 56 SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEA 135 (449)
Q Consensus 56 ~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~ 135 (449)
..-|+.+.+=+++|+++.|.|++|+|||||...++...... .| ..+.|+.= .++..+.
T Consensus 187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~---~g-------------~~vl~~sl------E~~~~~l 244 (444)
T 2q6t_A 187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALK---EG-------------VGVGIYSL------EMPAAQL 244 (444)
T ss_dssp CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT---TC-------------CCEEEEES------SSCHHHH
T ss_pred CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh---CC-------------CeEEEEEC------CCCHHHH
Confidence 44677777779999999999999999999998887643210 11 11333322 1233322
Q ss_pred HHH--HHhccCC------CCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHH--hCCCEEEEeCCCC
Q 044030 136 VYY--SAQLQLP------DTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEIL--TRPKLLFLDEPTS 205 (449)
Q Consensus 136 l~~--~~~~~~~------~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~--~~P~llllDEPts 205 (449)
..- +.....+ ..++.. ...++...++.+.-.+..-....++|..+-+ +.++.+. .+|+++++|..+.
T Consensus 245 ~~R~~~~~~~i~~~~l~~g~l~~~-~~~~~~~a~~~l~~~~l~i~d~~~~s~~~l~--~~~~~l~~~~~~~lIvID~l~~ 321 (444)
T 2q6t_A 245 TLRMMCSEARIDMNRVRLGQLTDR-DFSRLVDVASRLSEAPIYIDDTPDLTLMEVR--ARARRLVSQNQVGLIIIDYLQL 321 (444)
T ss_dssp HHHHHHHHTTCCTTTCCGGGCCHH-HHHHHHHHHHHHHTSCEEEECCTTCBHHHHH--HHHHHHHHHSCCCEEEEECGGG
T ss_pred HHHHHHHHcCCCHHHHhCCCCCHH-HHHHHHHHHHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEcChhh
Confidence 210 1111100 012222 2233333344332111111112466776653 4555555 4899999999876
Q ss_pred CCCH----------HHHHHHHHHHHHHHhhcCCCeEEEEEecCCc------------------HHHHhhcCeEEEeeC
Q 044030 206 GLDS----------AASYYVMSRIAKLGQRDGIGRTIIASIHQPS------------------SEVFQLFHNLCLLSA 255 (449)
Q Consensus 206 gLD~----------~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~------------------~~i~~~~D~v~~l~~ 255 (449)
-.+. .....+.+.|+.++++.+. +||+++|-.. ..+.+.+|.|+.|..
T Consensus 322 ~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v--~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~r 397 (444)
T 2q6t_A 322 MSGPGSGKSGENRQQEIAAISRGLKALARELGI--PIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIYR 397 (444)
T ss_dssp CBCC-------CHHHHHHHHHHHHHHHHHHHTS--CEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEEE
T ss_pred cCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCC--eEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEec
Confidence 4432 1235688889999988876 9999988321 024667898888863
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=6e-06 Score=75.76 Aligned_cols=30 Identities=33% Similarity=0.424 Sum_probs=27.1
Q ss_pred EEEecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 64 GYAKPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 64 ~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++++|++++|+|++|||||||.+.|++.+
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 356789999999999999999999999975
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=1.3e-05 Score=70.36 Aligned_cols=31 Identities=42% Similarity=0.560 Sum_probs=25.3
Q ss_pred eeeeEEEecCeEEEEECCCCCcHHHHHHHHHc
Q 044030 60 EDLTGYAKPGHLLAIMGPSGSGKTTLLDALAG 91 (449)
Q Consensus 60 ~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G 91 (449)
++.++++.+| +++|+|||||||||++++|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 4455666655 999999999999999999874
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.82 E-value=3.4e-06 Score=89.53 Aligned_cols=42 Identities=36% Similarity=0.496 Sum_probs=35.5
Q ss_pred EEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCcee-EEE-ECCEe
Q 044030 65 YAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTG-KIL-INGHK 109 (449)
Q Consensus 65 ~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G-~I~-~~g~~ 109 (449)
.+++|++++|+|+||||||||+++|+|++.+. +| +|. ++|.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~---~G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEM---GGRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT---CSSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhccc---CCceEEEECCcH
Confidence 57799999999999999999999999998663 54 674 77754
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.82 E-value=6.7e-06 Score=72.88 Aligned_cols=26 Identities=35% Similarity=0.565 Sum_probs=23.9
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.|++++|+||||||||||+++|++.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999975
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.79 E-value=8.1e-06 Score=75.20 Aligned_cols=29 Identities=24% Similarity=0.414 Sum_probs=26.2
Q ss_pred EecCeEEEEECCCCCcHHHHHHHHHcCCC
Q 044030 66 AKPGHLLAIMGPSGSGKTTLLDALAGRLG 94 (449)
Q Consensus 66 i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~ 94 (449)
..+|++++|+||||||||||++.|++..+
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34899999999999999999999999764
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.75 E-value=5.8e-05 Score=77.59 Aligned_cols=125 Identities=14% Similarity=0.100 Sum_probs=68.2
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDT 147 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~ 147 (449)
++.+++++||+||||||++..|++.+... .++|.+-+.+ .. .....+.+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~---G~kVllv~~D--------------~~---r~~a~eqL~~--------- 146 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR---GYKVGLVAAD--------------VY---RPAAYDQLLQ--------- 146 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT---TCCEEEEEEC--------------CS---CHHHHHHHHH---------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEecC--------------cc---chhHHHHHHH---------
Confidence 58899999999999999999999877542 3444443222 10 0012222222
Q ss_pred CCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCC-CC--CCHHHHHHHHHHHHHHHh
Q 044030 148 MPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPT-SG--LDSAASYYVMSRIAKLGQ 224 (449)
Q Consensus 148 ~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPt-sg--LD~~~~~~i~~~l~~l~~ 224 (449)
+-+..|+.-.... ....--.--+-+++.+...+++++|+|+|- .+ .|+....++.++++.+.
T Consensus 147 ------------~~~~~gv~~~~~~--~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~- 211 (433)
T 3kl4_A 147 ------------LGNQIGVQVYGEP--NNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLK- 211 (433)
T ss_dssp ------------HHHTTTCCEECCT--TCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHC-
T ss_pred ------------HHHhcCCceeecc--ccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhC-
Confidence 2222233211100 011111111224445555689999999997 45 78887777777666553
Q ss_pred hcCCCeEEEEEecC
Q 044030 225 RDGIGRTIIASIHQ 238 (449)
Q Consensus 225 ~~g~g~tii~~tH~ 238 (449)
.. ...+++.+|.
T Consensus 212 pd--~vlLVlDa~~ 223 (433)
T 3kl4_A 212 PD--DVILVIDASI 223 (433)
T ss_dssp CS--EEEEEEEGGG
T ss_pred Cc--ceEEEEeCcc
Confidence 22 2244555543
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.70 E-value=4.6e-05 Score=74.33 Aligned_cols=29 Identities=34% Similarity=0.501 Sum_probs=26.2
Q ss_pred EEecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 65 YAKPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 65 ~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.+.++..+.|.||+|+|||||.++|++..
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 46788999999999999999999999864
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00071 Score=67.76 Aligned_cols=37 Identities=35% Similarity=0.397 Sum_probs=29.5
Q ss_pred cceeeeee--EEEecCeEEEEECCCCCcHHHHHHHHHcC
Q 044030 56 SSILEDLT--GYAKPGHLLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 56 ~~iL~~vs--~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
..-|+.+- +=+++|+++.|.||+|+|||||...++..
T Consensus 48 ~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 48 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34556543 35899999999999999999999887753
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.66 E-value=2.4e-05 Score=69.68 Aligned_cols=22 Identities=36% Similarity=0.727 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.65 E-value=7.7e-06 Score=81.30 Aligned_cols=28 Identities=25% Similarity=0.434 Sum_probs=24.9
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCCC
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRLG 94 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~~ 94 (449)
.++..+.|.||+|+|||||++.+++...
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999998653
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.64 E-value=3.6e-06 Score=84.00 Aligned_cols=52 Identities=25% Similarity=0.349 Sum_probs=42.6
Q ss_pred cccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 044030 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH 108 (449)
Q Consensus 54 ~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~ 108 (449)
+.+.+++++++.+.+|.+++|+|++|||||||++.|+|.+.+. .|+|.+-+.
T Consensus 41 ~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~---~~~v~v~~~ 92 (341)
T 2p67_A 41 LSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE---GLKVAVIAV 92 (341)
T ss_dssp HHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHT---TCCEEEEEE
T ss_pred HHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEEee
Confidence 3457899999999999999999999999999999999987542 455655443
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0005 Score=64.23 Aligned_cols=45 Identities=16% Similarity=0.183 Sum_probs=29.6
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecC
Q 044030 193 TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQ 238 (449)
Q Consensus 193 ~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~ 238 (449)
.+|+++|+..+.+.++......+..+++.+....+ ..++|+.+|-
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~-~~~iiv~nK~ 155 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERAR-SFMILIFTRK 155 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHG-GGEEEEEECG
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhcc-ceEEEEEeCC
Confidence 37899999999888888666555555544432111 1278888883
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=5.3e-05 Score=69.74 Aligned_cols=31 Identities=39% Similarity=0.461 Sum_probs=25.3
Q ss_pred eeeEEEecCeEEEEECCCCCcHHHHHHHHHcC
Q 044030 61 DLTGYAKPGHLLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 61 ~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
+.++.+.+ .+++|+|||||||||++++|.-.
T Consensus 16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~~~ 46 (203)
T 3qks_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAILVG 46 (203)
T ss_dssp SEEEECCS-EEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEeCC-CeEEEEcCCCCCHHHHHHHHHHH
Confidence 45566665 49999999999999999998643
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=1.9e-05 Score=70.55 Aligned_cols=38 Identities=34% Similarity=0.404 Sum_probs=29.7
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCcee--EEEECCE
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTG--KILINGH 108 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G--~I~~~g~ 108 (449)
.+|++++|+|++||||||+.++|++.+.+ .| .|.+++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~----~g~~~i~~d~~ 42 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC----HGIPCYTLDGD 42 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH----TTCCEEEEEHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh----CCCcEEEECCh
Confidence 47899999999999999999999997633 24 5555543
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.51 E-value=3.2e-05 Score=72.63 Aligned_cols=37 Identities=32% Similarity=0.449 Sum_probs=26.9
Q ss_pred eeeeeeEEEe---cCeEEEEECCCCCcHHHHHHHHHcCCC
Q 044030 58 ILEDLTGYAK---PGHLLAIMGPSGSGKTTLLDALAGRLG 94 (449)
Q Consensus 58 iL~~vs~~i~---~Ge~~~IlGpnGaGKSTLL~~l~G~~~ 94 (449)
=|.++|+++. +|.+++|.||+||||||+++.|+..+.
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 4677777776 899999999999999999999999764
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00045 Score=67.79 Aligned_cols=172 Identities=15% Similarity=0.143 Sum_probs=88.9
Q ss_pred ceeeeee-EEEecCeEEEEECCCCCcHHHHHHHHHcCC-CCCCCceeEEE-ECCEecc-cccCcEEEEcCCCCCCCCCCH
Q 044030 57 SILEDLT-GYAKPGHLLAIMGPSGSGKTTLLDALAGRL-GSDTRQTGKIL-INGHKKA-LAYGTSAYVTQDDTLITTLTV 132 (449)
Q Consensus 57 ~iL~~vs-~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~-~~~~~~~G~I~-~~g~~~~-~~~~~i~yv~Q~~~l~~~lTv 132 (449)
..|+.+- +-+++|+++.|.||+|+|||||...++... .+ .|..+ ++|.... .....+.|+.-+..+ ..
T Consensus 85 ~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~----~~~~~~~~~~~~gg~~~~~v~yi~~e~~~----~~ 156 (322)
T 2i1q_A 85 SELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNP----EFLFYDEEAVSKGEVAQPKAVYIDTEGTF----RP 156 (322)
T ss_dssp HHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCG----GGEECCTTTSCTTTTSSEEEEEEESSSCC----CH
T ss_pred hhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhcc----ccccccccccccCCCCCceEEEEECCCCC----CH
Confidence 3455443 578999999999999999999998877521 11 11100 0011000 000235566544332 12
Q ss_pred HHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHH-HHHHHHHHHHH---hCCCEEEEeCCCCCCC
Q 044030 133 KEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQ-KRRVSISIEIL---TRPKLLFLDEPTSGLD 208 (449)
Q Consensus 133 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGe-rqRv~ia~aL~---~~P~llllDEPtsgLD 208 (449)
.+-.....++. .+. +++++.+-+. ...+..+ .+-+..+..++ .+++++++|.-++-..
T Consensus 157 ~~l~~~~~~~g----~~~-------~~~~~~l~~~-------~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 218 (322)
T 2i1q_A 157 ERIMQMAEHAG----IDG-------QTVLDNTFVA-------RAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFR 218 (322)
T ss_dssp HHHHHHHHHHT----CCH-------HHHHHTEEEE-------ECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHH
T ss_pred HHHHHHHHHcC----CCH-------HHHhcCEEEE-------eCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHH
Confidence 22222222221 111 1122211111 1122222 23344455565 4589999999875321
Q ss_pred --------HH----HHHHHHHHHHHHHhhcCCCeEEEEEecCCc---------------HHHHhhcCeEEEeeCC
Q 044030 209 --------SA----ASYYVMSRIAKLGQRDGIGRTIIASIHQPS---------------SEVFQLFHNLCLLSAG 256 (449)
Q Consensus 209 --------~~----~~~~i~~~l~~l~~~~g~g~tii~~tH~~~---------------~~i~~~~D~v~~l~~G 256 (449)
.. ...+++..|+.++++.+. +||++.|-.. ..+.+.+|.++.|+..
T Consensus 219 ~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~--~vi~~nq~~~~~~~~~g~~~~~~g~~~~~~~~d~~i~l~~~ 291 (322)
T 2i1q_A 219 NEYTGRGKLAERQQKLGRHMATLNKLADLFNC--VVLVTNQVSAKPDAFFGMAEQAIGGHIVGHAATFRFFVRKG 291 (322)
T ss_dssp HHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTC--EEEEEECEECC-------CCEESSHHHHHHHCSEEEEEEEC
T ss_pred HHhcCCccHHHHHHHHHHHHHHHHHHHHHhCC--EEEEECceeecCCCCCCCCcCCCCcHHHHhcCcEEEEEEec
Confidence 11 235667778888877766 8888876321 1255677888888643
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.50 E-value=2.1e-05 Score=78.70 Aligned_cols=40 Identities=20% Similarity=0.363 Sum_probs=32.3
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHK 109 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~ 109 (449)
+++.+++|+|++|||||||+|.|+|.+.+. .|+|.+.+.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~---~~~v~V~~~d 111 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTER---GHKLSVLAVD 111 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEECC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhc---CCeEEEEeec
Confidence 457899999999999999999999976542 5677665544
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00046 Score=71.24 Aligned_cols=36 Identities=22% Similarity=0.131 Sum_probs=30.0
Q ss_pred cceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHc
Q 044030 56 SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAG 91 (449)
Q Consensus 56 ~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G 91 (449)
..-|+.+..=+.+|+++.|.|++|+|||||.--++.
T Consensus 184 ~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 184 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp CHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred cHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 345666666689999999999999999999877765
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00017 Score=65.53 Aligned_cols=24 Identities=46% Similarity=0.553 Sum_probs=21.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 044030 70 HLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 70 e~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
..+.|.||+|+|||||+++|+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 678999999999999999999865
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=97.42 E-value=1.7e-05 Score=79.96 Aligned_cols=52 Identities=29% Similarity=0.367 Sum_probs=44.2
Q ss_pred eEEEEeeEEEEeecCcccccceee--------------eeeEEEecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILE--------------DLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~--------------~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.+.|+|+++. ++ ..+..|+ |+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus 133 ri~Fe~ltp~-yP----~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPL-HA----NSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEE-SC----CSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred Cceecccccc-CC----CCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 3567888876 22 4567888 899999999999999999999999999999864
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00031 Score=68.78 Aligned_cols=45 Identities=16% Similarity=0.056 Sum_probs=32.5
Q ss_pred HhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCC
Q 044030 192 LTRPKLLFLDEPTS-GLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQP 239 (449)
Q Consensus 192 ~~~P~llllDEPts-gLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~ 239 (449)
..+|.+|++||+-. .-+...+..+...+..+.+ .+. .+|++++.+
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~-~~~--~iii~~~~~ 141 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYL-LEK--QIILASDRH 141 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHH-TTC--EEEEEESSC
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHH-CCC--eEEEEecCC
Confidence 45799999999865 2344778888888888764 343 677777654
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.41 E-value=2.1e-05 Score=83.32 Aligned_cols=49 Identities=33% Similarity=0.524 Sum_probs=40.4
Q ss_pred cceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 044030 56 SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH 108 (449)
Q Consensus 56 ~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~ 108 (449)
..+++++++.+ +|+.++|+||||+|||||+++|++.+.+ ..|.|.++|.
T Consensus 96 ~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~---~~~~i~~~~~ 144 (543)
T 3m6a_A 96 YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGR---KFVRISLGGV 144 (543)
T ss_dssp HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTC---EEEEECCCC-
T ss_pred HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCC---CeEEEEeccc
Confidence 45678888888 8999999999999999999999998754 3677766653
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00019 Score=63.57 Aligned_cols=27 Identities=44% Similarity=0.683 Sum_probs=23.4
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467889999999999999999999964
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=8e-05 Score=68.82 Aligned_cols=37 Identities=38% Similarity=0.513 Sum_probs=27.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE
Q 044030 69 GHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILI 105 (449)
Q Consensus 69 Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~ 105 (449)
+.+++|+|||||||||+.++|++.+......+|++..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 5689999999999999999999865221123566654
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.36 E-value=2.9e-05 Score=72.85 Aligned_cols=67 Identities=15% Similarity=0.148 Sum_probs=39.7
Q ss_pred ChHHHHHHHHHHHHHhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCe
Q 044030 178 SGGQKRRVSISIEILTRPKLLFLDEPTS-GLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHN 249 (449)
Q Consensus 178 SgGerqRv~ia~aL~~~P~llllDEPts-gLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~ 249 (449)
+.|.-.+.. ...+.+-+++++||.-. ++|.......++.+..... +. .++++|.--+...+.++++.
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~--~~-~~il~SAT~~~~~~~~~~~~ 229 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYP--EV-RIVLMSATIDTSMFCEYFFN 229 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCT--TS-EEEEEECSSCCHHHHHHTTS
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCC--CC-eEEEEecCCCHHHHHHHcCC
Confidence 445555542 33578899999999976 6887776555555554432 11 25665544334445555543
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00058 Score=65.30 Aligned_cols=28 Identities=36% Similarity=0.577 Sum_probs=24.2
Q ss_pred EecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 66 AKPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 66 i~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+.++.-+.|.||+|+|||||.++++...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3566779999999999999999999864
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00021 Score=71.87 Aligned_cols=44 Identities=23% Similarity=0.407 Sum_probs=34.0
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHH
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALA 90 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~ 90 (449)
..++.|+..-+ ..++++.+++.+| +++|.|||||||||+|.+|.
T Consensus 3 M~l~~L~l~nF--------r~~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 3 MILKEIRMNNF--------KSHVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEEEEEE--------TTEEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred cEEeEEEEEcc--------ccccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 45666766521 2347778888774 99999999999999999986
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00022 Score=64.14 Aligned_cols=35 Identities=37% Similarity=0.535 Sum_probs=20.9
Q ss_pred ceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcC
Q 044030 57 SILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 57 ~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
.+++++|+..++. .++|+|++|+|||||++.+++.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999998887 5689999999999999999984
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0002 Score=73.62 Aligned_cols=40 Identities=28% Similarity=0.486 Sum_probs=31.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCC------C---CCceeEEEECCEec
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRLGS------D---TRQTGKILINGHKK 110 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~~~------~---~~~~G~I~~~g~~~ 110 (449)
.++|+|+||+|||||+|.|+|.... + .+..|.+.++|.+.
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~ 230 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 230 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence 7999999999999999999997530 0 12468899999753
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0047 Score=64.45 Aligned_cols=169 Identities=14% Similarity=0.169 Sum_probs=88.4
Q ss_pred ceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHHH
Q 044030 57 SILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAV 136 (449)
Q Consensus 57 ~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l 136 (449)
.-|+.+..=+.+|+++.|.|++|+|||||+-.++-..... .| ..+.|+.= +++..+.+
T Consensus 230 ~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~---~g-------------~~vl~~s~------E~s~~~l~ 287 (503)
T 1q57_A 230 TGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTA---MG-------------KKVGLAML------EESVEETA 287 (503)
T ss_dssp TTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTT---SC-------------CCEEEEES------SSCHHHHH
T ss_pred hhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHh---cC-------------CcEEEEec------cCCHHHHH
Confidence 4455555569999999999999999999987666432110 11 12334432 23444333
Q ss_pred HH--HHhccCCCCCCH--HH-----HHHHHHHHHHHc-CCch-hhCccCCCCChHHHHHHHHHHHHH--hCCCEEEEeCC
Q 044030 137 YY--SAQLQLPDTMPK--SD-----KKERAEVTIREM-GLQD-AMNTRIRRLSGGQKRRVSISIEIL--TRPKLLFLDEP 203 (449)
Q Consensus 137 ~~--~~~~~~~~~~~~--~~-----~~~~v~~~l~~l-gL~~-~~~~~~~~LSgGerqRv~ia~aL~--~~P~llllDEP 203 (449)
.= +..... .... .. ..+....+.+.+ .-.+ ..+..+.+++-.+ -+..++.++ .+|+++++|=-
T Consensus 288 ~r~~~~~~~~--~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~--i~~~i~~~~~~~~~~lvVID~l 363 (503)
T 1q57_A 288 EDLIGLHNRV--RLRQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDR--LLAKLAYMRSGLGCDVIILDHI 363 (503)
T ss_dssp HHHHHHHTTS--CCTTCHHHHHHHHHTSHHHHHHHHHHTTTCEEEECCC---CHHH--HHHHHHHHHHTTCCSEEEEECT
T ss_pred HHHHHHHcCC--ChhhccccccCCCCHHHHHHHHHHHhccCCEEEECCCCCCCHHH--HHHHHHHHHHhcCCCEEEEccc
Confidence 21 111111 1110 00 000111122222 1000 1111122244333 334445554 46999999944
Q ss_pred CCCC-------CH-HHHHHHHHHHHHHHhhcCCCeEEEEEecCCc---------------------HHHHhhcCeEEEee
Q 044030 204 TSGL-------DS-AASYYVMSRIAKLGQRDGIGRTIIASIHQPS---------------------SEVFQLFHNLCLLS 254 (449)
Q Consensus 204 tsgL-------D~-~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~---------------------~~i~~~~D~v~~l~ 254 (449)
+ .+ +. .....++..|+.++++.+. +||+++|-.. ..+.+.+|-|+.|.
T Consensus 364 ~-~l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i--~vi~~~q~~r~~~~~~~~~~~~p~l~dlr~s~~ie~~aD~vi~l~ 440 (503)
T 1q57_A 364 S-IVVSASGESDERKMIDNLMTKLKGFAKSTGV--VLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALE 440 (503)
T ss_dssp T-CCCSCCSCCCHHHHHHHHHHHHHHHHHHHTC--EEEEEEECCCCSSSSCSTTCCCCCSSSCSSSSHHHHHCSEEEEEE
T ss_pred h-hcCCCCCCCCHHHHHHHHHHHHHHHHHHHCC--eEEEEEcCCchhccCccccCCCCChhhhccchHhhecCcEEEEEE
Confidence 3 22 11 2335688889999988877 9999988542 13567799999986
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00032 Score=64.61 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=23.6
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
++..+.|.||+|+|||||++.++...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999998754
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=5.9e-05 Score=69.41 Aligned_cols=41 Identities=27% Similarity=0.320 Sum_probs=33.3
Q ss_pred EEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCcee--EEEECCE
Q 044030 65 YAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTG--KILINGH 108 (449)
Q Consensus 65 ~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G--~I~~~g~ 108 (449)
.+++|.+++|+|++||||||+.+.|++.+.+ ..| .+.++|.
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~---~~g~~~~~~~~d 63 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVR---DRRVHAYRLDGD 63 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHH---HHCCCEEEECHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhcc---ccCCcEEEECCh
Confidence 3568999999999999999999999998753 256 6777654
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00012 Score=65.97 Aligned_cols=32 Identities=25% Similarity=0.354 Sum_probs=26.4
Q ss_pred eeeEEEecCeEEEEECCCCCcHHHHHHHHHcC
Q 044030 61 DLTGYAKPGHLLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 61 ~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888889999999999999999999999875
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00012 Score=66.88 Aligned_cols=28 Identities=32% Similarity=0.476 Sum_probs=25.3
Q ss_pred EecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 66 AKPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 66 i~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
..+|.+++|+||||||||||.+.|+..+
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4578899999999999999999999865
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00015 Score=65.36 Aligned_cols=39 Identities=41% Similarity=0.424 Sum_probs=29.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 044030 70 HLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH 108 (449)
Q Consensus 70 e~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~ 108 (449)
.+++|+|+||||||||++.|.+.+......-|.|..++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 589999999999999999999875432123466666543
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00015 Score=65.93 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 044030 71 LLAIMGPSGSGKTTLLDALAG 91 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G 91 (449)
+++|+|+|||||||+.++|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999998
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=8e-05 Score=67.63 Aligned_cols=37 Identities=43% Similarity=0.563 Sum_probs=31.7
Q ss_pred ccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcC
Q 044030 55 SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 55 ~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
-..+++++|+..+++. ++|+|++|+|||||++.+.+-
T Consensus 12 ~~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 12 FSSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp -CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 3468999999888885 689999999999999999873
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0071 Score=60.69 Aligned_cols=35 Identities=34% Similarity=0.417 Sum_probs=27.8
Q ss_pred ceeeeee--EEEecCeEEEEECCCCCcHHHHHHHHHc
Q 044030 57 SILEDLT--GYAKPGHLLAIMGPSGSGKTTLLDALAG 91 (449)
Q Consensus 57 ~iL~~vs--~~i~~Ge~~~IlGpnGaGKSTLL~~l~G 91 (449)
.-|+.+- +=+++|+++.|.||+|+|||||...++.
T Consensus 60 ~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 60 LSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 3454433 3689999999999999999999877664
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00011 Score=75.34 Aligned_cols=45 Identities=24% Similarity=0.152 Sum_probs=38.1
Q ss_pred eeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 044030 60 EDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHK 109 (449)
Q Consensus 60 ~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~ 109 (449)
+++++. +|++++++|+|||||||++..|++.+.+. .|+|.+.+.+
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~---g~~Vllvd~D 135 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAAD 135 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEECC
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEeecc
Confidence 678887 89999999999999999999999988652 5777776644
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00032 Score=61.38 Aligned_cols=23 Identities=35% Similarity=0.653 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.++|+|++|+|||||++.++|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999964
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.02 E-value=6.4e-05 Score=74.42 Aligned_cols=42 Identities=31% Similarity=0.609 Sum_probs=37.1
Q ss_pred cccceeeeeeEEEecCeE--EEEECCCCCcHHHHHHHHHcCCCC
Q 044030 54 GSSSILEDLTGYAKPGHL--LAIMGPSGSGKTTLLDALAGRLGS 95 (449)
Q Consensus 54 ~~~~iL~~vs~~i~~Ge~--~~IlGpnGaGKSTLL~~l~G~~~~ 95 (449)
|...+++.++..++.|++ +.+.||+|+||||+++++++.+.+
T Consensus 29 g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 29 GQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp SCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 455688899999999999 999999999999999999997643
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=7e-05 Score=74.87 Aligned_cols=37 Identities=24% Similarity=0.426 Sum_probs=33.9
Q ss_pred ceeeeeeEEEecCeE--EEEECCCCCcHHHHHHHHHcCC
Q 044030 57 SILEDLTGYAKPGHL--LAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 57 ~iL~~vs~~i~~Ge~--~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.+++.+++.+++|++ ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 478888889999998 9999999999999999999865
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0054 Score=56.79 Aligned_cols=61 Identities=16% Similarity=0.137 Sum_probs=42.8
Q ss_pred HhCCCEEEEeCCCC----CCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcH---------HHHhhcCeEEEee
Q 044030 192 LTRPKLLFLDEPTS----GLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSS---------EVFQLFHNLCLLS 254 (449)
Q Consensus 192 ~~~P~llllDEPts----gLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~---------~i~~~~D~v~~l~ 254 (449)
-.+|+++++|--+. .-|......++..|+.++++.|. ++++++|.... .+...+|-|+.|.
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i--~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGV--TTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCC--EEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCC--CeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 45889999996432 12455567788889999988877 99999986422 1245788888875
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0004 Score=62.26 Aligned_cols=29 Identities=38% Similarity=0.495 Sum_probs=26.0
Q ss_pred EecCeEEEEECCCCCcHHHHHHHHHcCCC
Q 044030 66 AKPGHLLAIMGPSGSGKTTLLDALAGRLG 94 (449)
Q Consensus 66 i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~ 94 (449)
..+|.+++|+|++||||||+.+.|++.+.
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 35789999999999999999999998764
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00034 Score=63.58 Aligned_cols=25 Identities=36% Similarity=0.515 Sum_probs=22.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 69 GHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 69 Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
..+++|+|++||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999854
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00043 Score=61.75 Aligned_cols=26 Identities=35% Similarity=0.597 Sum_probs=22.8
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcC
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
.+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 36789999999999999999999853
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=96.92 E-value=8.7e-05 Score=72.59 Aligned_cols=45 Identities=24% Similarity=0.206 Sum_probs=35.8
Q ss_pred ee-eeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 044030 60 ED-LTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH 108 (449)
Q Consensus 60 ~~-vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~ 108 (449)
++ +++..+ |++++++|+||+||||++..|++.+.+. .|+|.+.+.
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~---g~~v~l~~~ 134 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKK---GFKVGLVGA 134 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHT---TCCEEEEEC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEec
Confidence 45 777766 9999999999999999999999987542 456665543
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00019 Score=68.16 Aligned_cols=46 Identities=22% Similarity=0.316 Sum_probs=34.4
Q ss_pred eeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 044030 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHK 109 (449)
Q Consensus 58 iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~ 109 (449)
++++.+ ...++.++.|+|+|||||||+.+.|+..+. .|.+.+++..
T Consensus 22 ~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~-----~~~~~~~~D~ 67 (253)
T 2p5t_B 22 LTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ-----GNIVIIDGDS 67 (253)
T ss_dssp HHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTT-----TCCEEECGGG
T ss_pred HHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcC-----CCcEEEecHH
Confidence 344444 566788999999999999999999998653 2456666643
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00038 Score=70.68 Aligned_cols=46 Identities=15% Similarity=0.270 Sum_probs=33.3
Q ss_pred eEEEecCeEEEEECCCCCcHHHHHHHHHcCCC-----C---CCCceeEEEECCE
Q 044030 63 TGYAKPGHLLAIMGPSGSGKTTLLDALAGRLG-----S---DTRQTGKILINGH 108 (449)
Q Consensus 63 s~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~-----~---~~~~~G~I~~~g~ 108 (449)
-..+..|..++|+|+||+|||||+|+|+|... | -.+..|.+.+.|.
T Consensus 16 ~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 16 IGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CCCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred HhhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 34567788899999999999999999999721 0 0134688887764
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00038 Score=65.77 Aligned_cols=34 Identities=38% Similarity=0.676 Sum_probs=24.4
Q ss_pred eeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 58 iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.++++++..++| +.|.||+|+|||||+++|++..
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHc
Confidence 345555555555 8899999999999999999865
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00091 Score=66.23 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=23.7
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
..+..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999754
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00055 Score=61.01 Aligned_cols=23 Identities=52% Similarity=0.670 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999963
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00061 Score=59.63 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998754
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00061 Score=63.73 Aligned_cols=28 Identities=32% Similarity=0.438 Sum_probs=24.4
Q ss_pred EecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 66 AKPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 66 i~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-.+|.+++|+|++||||||+.+.|++.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578899999999999999999999743
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00074 Score=59.71 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=22.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 69 GHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 69 Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
|.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999999865
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0069 Score=60.30 Aligned_cols=27 Identities=30% Similarity=0.559 Sum_probs=23.4
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.+..-+.|.||+|+|||||.++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456679999999999999999999754
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0057 Score=57.10 Aligned_cols=53 Identities=21% Similarity=0.309 Sum_probs=41.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEec---------CCcHHHHhhcCeEEEee
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIH---------QPSSEVFQLFHNLCLLS 254 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH---------~~~~~i~~~~D~v~~l~ 254 (449)
+|+++++||--. |+. .+++.++.+++. |. +||++-| .++..+..++|+|.-|+
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~-gi--~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAEN-GF--VVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHHT-TC--EEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHhC-CC--eEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999954 654 355666777754 55 9999999 56678889999999875
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0047 Score=57.86 Aligned_cols=26 Identities=35% Similarity=0.466 Sum_probs=22.1
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+..-+.|.||+|+|||||.++++...
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34558899999999999999999854
|
| >3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0059 Score=60.04 Aligned_cols=27 Identities=33% Similarity=0.463 Sum_probs=22.0
Q ss_pred EEEecCeEEEEECCCCCcHHHHH-HHHHc
Q 044030 64 GYAKPGHLLAIMGPSGSGKTTLL-DALAG 91 (449)
Q Consensus 64 ~~i~~Ge~~~IlGpnGaGKSTLL-~~l~G 91 (449)
+=+++| ++.|.||+|+|||||+ .+++.
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~~~~ 51 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTMVSS 51 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHHHHH
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 457889 9999999999999995 54444
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.022 Score=55.85 Aligned_cols=27 Identities=33% Similarity=0.568 Sum_probs=23.4
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.+..-+.|.||+|+|||||.++++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 455678899999999999999999854
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=96.66 E-value=0.00097 Score=59.36 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=22.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 69 GHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 69 Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
|.+++|.|++||||||+.+.|+-.+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999998744
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.026 Score=66.66 Aligned_cols=29 Identities=34% Similarity=0.431 Sum_probs=26.4
Q ss_pred EEecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 65 YAKPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 65 ~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
=+++|+++.|.||+|+|||||+..++...
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~a 756 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHH
Confidence 49999999999999999999999888753
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0033 Score=56.51 Aligned_cols=42 Identities=21% Similarity=0.245 Sum_probs=28.9
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCC
Q 044030 193 TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQP 239 (449)
Q Consensus 193 ~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~ 239 (449)
.++.++++||. ..+++.....+.+.+.... . +..+|++++.+
T Consensus 101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~~--~--~~~~i~~~~~~ 142 (226)
T 2chg_A 101 APFKIIFLDEA-DALTADAQAALRRTMEMYS--K--SCRFILSCNYV 142 (226)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHTT--T--TEEEEEEESCG
T ss_pred cCceEEEEeCh-hhcCHHHHHHHHHHHHhcC--C--CCeEEEEeCCh
Confidence 36889999995 5577777777777766532 1 33677777764
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.00047 Score=69.13 Aligned_cols=46 Identities=24% Similarity=0.309 Sum_probs=34.5
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCC
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLG 94 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~ 94 (449)
.+.+.|++.. + +.+.+++++++.| +|+|++|+|||||++.|.|...
T Consensus 17 ~v~~~~l~~~-~-----~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~ 62 (361)
T 2qag_A 17 YVGFANLPNQ-V-----HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDL 62 (361)
T ss_dssp ----CCHHHH-H-----HTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC
T ss_pred eEEeccchHH-h-----CCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCC
Confidence 4677777665 1 4567889999887 9999999999999999988643
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.001 Score=62.63 Aligned_cols=25 Identities=36% Similarity=0.660 Sum_probs=22.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 69 GHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 69 Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.-+++|.||+||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999999643
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0011 Score=63.01 Aligned_cols=24 Identities=38% Similarity=0.444 Sum_probs=21.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 044030 70 HLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 70 e~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.+++|+||||||||||.+.|++.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 368999999999999999999854
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0011 Score=57.62 Aligned_cols=19 Identities=37% Similarity=0.623 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 044030 71 LLAIMGPSGSGKTTLLDAL 89 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l 89 (449)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0011 Score=59.12 Aligned_cols=26 Identities=38% Similarity=0.512 Sum_probs=23.0
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcC
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
.++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35778999999999999999999864
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0066 Score=59.81 Aligned_cols=33 Identities=27% Similarity=0.470 Sum_probs=27.7
Q ss_pred eeeeeEEEecCeEEEEECCCCCcHHHHHHHHHc
Q 044030 59 LEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAG 91 (449)
Q Consensus 59 L~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G 91 (449)
|+.+-+-+++|.++.|.||+|+|||||...++.
T Consensus 113 LD~lLGGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 113 VAEFGGHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp EEEETTEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred HHHHhCCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 333336789999999999999999999999875
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0012 Score=59.90 Aligned_cols=23 Identities=48% Similarity=0.756 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.+.|+||||||||||++.|....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 37899999999999999997654
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0014 Score=60.15 Aligned_cols=24 Identities=38% Similarity=0.545 Sum_probs=21.8
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHc
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAG 91 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G 91 (449)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.028 Score=66.40 Aligned_cols=35 Identities=34% Similarity=0.404 Sum_probs=28.6
Q ss_pred ceeeeee--EEEecCeEEEEECCCCCcHHHHHHHHHc
Q 044030 57 SILEDLT--GYAKPGHLLAIMGPSGSGKTTLLDALAG 91 (449)
Q Consensus 57 ~iL~~vs--~~i~~Ge~~~IlGpnGaGKSTLL~~l~G 91 (449)
.-|+.+- +=+++|+++.|.||+|+|||||.-.++.
T Consensus 369 ~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~ 405 (1706)
T 3cmw_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 405 (1706)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 4566654 3599999999999999999999877664
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0015 Score=58.81 Aligned_cols=23 Identities=35% Similarity=0.664 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 58999999999999999999854
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0016 Score=57.98 Aligned_cols=26 Identities=27% Similarity=0.273 Sum_probs=22.2
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.+..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998643
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0019 Score=58.50 Aligned_cols=27 Identities=33% Similarity=0.475 Sum_probs=23.8
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCCC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRLG 94 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~~ 94 (449)
+|.+++|.|++||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999998653
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0015 Score=58.03 Aligned_cols=25 Identities=36% Similarity=0.403 Sum_probs=22.3
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
++..+.|.|++||||||+.+.|+-.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999853
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0019 Score=58.31 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=23.8
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+|-+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57889999999999999999999865
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0013 Score=62.72 Aligned_cols=47 Identities=11% Similarity=0.014 Sum_probs=33.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEE
Q 044030 203 PTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCL 252 (449)
Q Consensus 203 PtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~ 252 (449)
|||+++......+++.+.+..+.... ++.+..|.. .++.+.++++.-
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~--~~~~~~~~~-~~~e~~~~~l~~ 190 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAEGKVT--TNPIIPRYD-EDIEREIKHISE 190 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHTCCC--CCCCCCCCC-HHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcccc--CCCCCcCCC-HHHHHHHHHHHH
Confidence 89999998888888888887754433 555666664 567776666543
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0018 Score=57.07 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 044030 70 HLLAIMGPSGSGKTTLLDALAG 91 (449)
Q Consensus 70 e~~~IlGpnGaGKSTLL~~l~G 91 (449)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0018 Score=57.31 Aligned_cols=23 Identities=48% Similarity=0.599 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48899999999999999999754
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0015 Score=58.48 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=22.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCC
Q 044030 70 HLLAIMGPSGSGKTTLLDALAGRLG 94 (449)
Q Consensus 70 e~~~IlGpnGaGKSTLL~~l~G~~~ 94 (449)
.+++|+|++|||||||++.|+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 3789999999999999999998653
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.00096 Score=60.76 Aligned_cols=24 Identities=46% Similarity=0.785 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRLG 94 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~~ 94 (449)
+++|.|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998663
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0019 Score=62.58 Aligned_cols=36 Identities=28% Similarity=0.376 Sum_probs=28.0
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING 107 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g 107 (449)
..|.++.|.|||||||||+.+.|+..++ .|.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~-----~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ-----GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT-----TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC-----CCeEEEec
Confidence 3567899999999999999999987542 24566665
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0021 Score=58.34 Aligned_cols=27 Identities=33% Similarity=0.428 Sum_probs=23.7
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.+|.+++|.|++||||||+.+.|+-.+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998643
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0022 Score=57.74 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=21.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 044030 69 GHLLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 69 Ge~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
..+++|.|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 357999999999999999999974
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=96.27 E-value=0.002 Score=57.61 Aligned_cols=27 Identities=26% Similarity=0.493 Sum_probs=23.4
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.++.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 357799999999999999999998643
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.018 Score=57.26 Aligned_cols=27 Identities=37% Similarity=0.610 Sum_probs=22.8
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.+..-+.|.||+|+|||||.++|+...
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 444568899999999999999999854
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0026 Score=56.61 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=21.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 044030 69 GHLLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 69 Ge~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
+.+++|.|++||||||+.+.|+-.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999853
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0023 Score=56.90 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+++|.|++||||||+.+.|+-.+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998754
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0022 Score=57.02 Aligned_cols=24 Identities=42% Similarity=0.567 Sum_probs=21.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 044030 70 HLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 70 e~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-.++|+|++|+|||||++.+++..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999864
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0024 Score=57.98 Aligned_cols=27 Identities=30% Similarity=0.455 Sum_probs=24.0
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
++|-+++|.|++||||||+.+.|+-.+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999998653
|
| >2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0027 Score=59.47 Aligned_cols=80 Identities=18% Similarity=0.169 Sum_probs=45.5
Q ss_pred HHHhCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHhhcCCCeEEEEEec-----CC----------------cHHHHhhc
Q 044030 190 EILTRPKLLFLDEPTSG-LDSAASYYVMSRIAKLGQRDGIGRTIIASIH-----QP----------------SSEVFQLF 247 (449)
Q Consensus 190 aL~~~P~llllDEPtsg-LD~~~~~~i~~~l~~l~~~~g~g~tii~~tH-----~~----------------~~~i~~~~ 247 (449)
++..+|+++++||+-.- .+.......++.+..+. ..| ..++.++| .. .+.+++.|
T Consensus 80 ~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l-~sg--idVitT~Nlqh~esl~d~v~~itg~~v~e~vpd~~~~~a 156 (228)
T 2r8r_A 80 LLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELL-AAG--IDVYTTVNVQHLESLNDQVRGITGVQVRETLPDWVLQEA 156 (228)
T ss_dssp HHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHH-HTT--CEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCHHHHHTC
T ss_pred HHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHH-cCC--CCEEEEccccccccHHHHHHHHcCCCcCCcCccHHHhhC
Confidence 34468999999998642 33222222333333333 334 48999988 21 12345566
Q ss_pred CeEEEeeCCeEEEecChhhHHHHHHHCCCCCC
Q 044030 248 HNLCLLSAGQTVYFGPATAANEFFAFNGFPCP 279 (449)
Q Consensus 248 D~v~~l~~G~iv~~g~~~~~~~~f~~~g~~~~ 279 (449)
|.|.+++ -+|+++.+.+..-....|
T Consensus 157 ~~v~lvD-------~~p~~l~~rl~~g~vy~~ 181 (228)
T 2r8r_A 157 FDLVLID-------LPPRELLERLRDGKVYVP 181 (228)
T ss_dssp SEEEEBC-------CCHHHHHHHHHTTCCCCT
T ss_pred CeEEEec-------CCHHHHHHHHHCCCccCh
Confidence 6666654 478887776655444444
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0028 Score=55.05 Aligned_cols=23 Identities=35% Similarity=0.655 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.|..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 37899999999999999999854
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0026 Score=54.79 Aligned_cols=23 Identities=13% Similarity=0.450 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998854
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0029 Score=54.57 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
-++|+|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999984
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0023 Score=55.12 Aligned_cols=22 Identities=27% Similarity=0.561 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 044030 72 LAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
++|+|++|+|||||++.++|..
T Consensus 5 i~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEECCCCCCHHHHHHHHcCcc
Confidence 7899999999999999998854
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0068 Score=63.18 Aligned_cols=28 Identities=36% Similarity=0.605 Sum_probs=23.7
Q ss_pred EecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 66 AKPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 66 i~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+.+..-+.|.||+|+|||+|.++|+...
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 4555669999999999999999998753
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0029 Score=54.20 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998643
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0043 Score=59.62 Aligned_cols=23 Identities=35% Similarity=0.650 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.++|+|++|+|||||+|.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0026 Score=57.08 Aligned_cols=27 Identities=30% Similarity=0.508 Sum_probs=23.6
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+++.+++|.|++||||||+.+.|+..+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 457789999999999999999998643
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.003 Score=54.06 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++++|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999864
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.06 Score=64.54 Aligned_cols=36 Identities=33% Similarity=0.387 Sum_probs=28.9
Q ss_pred ceeeeee--EEEecCeEEEEECCCCCcHHHHHHHHHcC
Q 044030 57 SILEDLT--GYAKPGHLLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 57 ~iL~~vs--~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
.-|+.+- +=+++|+++.|.||+|+|||||.-.++..
T Consensus 369 ~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~ 406 (2050)
T 3cmu_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 406 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 3455554 35999999999999999999998777653
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.003 Score=54.17 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++++|+.|+|||||++.+.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999999753
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0031 Score=56.92 Aligned_cols=23 Identities=39% Similarity=0.665 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999999854
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0027 Score=54.20 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++++|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999998754
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0033 Score=54.36 Aligned_cols=22 Identities=36% Similarity=0.637 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 044030 72 LAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
++|+|++|+|||||++.+++..
T Consensus 5 i~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 7899999999999999998754
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0032 Score=54.30 Aligned_cols=23 Identities=17% Similarity=0.440 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37899999999999999999865
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.003 Score=55.08 Aligned_cols=23 Identities=43% Similarity=0.589 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998854
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0033 Score=54.29 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999999753
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0033 Score=54.12 Aligned_cols=23 Identities=17% Similarity=0.377 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998754
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0039 Score=57.26 Aligned_cols=26 Identities=31% Similarity=0.553 Sum_probs=22.8
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+|-.++|+|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999998643
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0052 Score=61.62 Aligned_cols=39 Identities=28% Similarity=0.324 Sum_probs=28.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCC-----C---CCCceeEEEECC
Q 044030 69 GHLLAIMGPSGSGKTTLLDALAGRLG-----S---DTRQTGKILING 107 (449)
Q Consensus 69 Ge~~~IlGpnGaGKSTLL~~l~G~~~-----~---~~~~~G~I~~~g 107 (449)
|-.++|+|.+|+|||||+|+|+|... | -.+..|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 34689999999999999999999431 0 012357777765
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0034 Score=54.69 Aligned_cols=23 Identities=22% Similarity=0.505 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999998753
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0028 Score=56.17 Aligned_cols=22 Identities=41% Similarity=0.631 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
-++|+|++|+|||||++.+.+.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0034 Score=53.92 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999998753
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0031 Score=54.38 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 044030 72 LAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
++|+|++|+|||||++.+.+..
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 7899999999999999999854
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0035 Score=54.72 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998854
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0027 Score=56.15 Aligned_cols=26 Identities=38% Similarity=0.524 Sum_probs=18.4
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998644
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0059 Score=59.93 Aligned_cols=37 Identities=27% Similarity=0.232 Sum_probs=32.2
Q ss_pred ccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcC
Q 044030 55 SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 55 ~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
....+++....+ .|.-++|+|+||+|||||...|.++
T Consensus 131 ~~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 131 RTTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred cceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 346788888777 8899999999999999999999874
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0032 Score=55.98 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.++|+|++|+|||||++.|.|..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0039 Score=57.67 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=22.2
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.++.+++|.|++||||||+.+.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345789999999999999999998643
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0048 Score=53.79 Aligned_cols=25 Identities=44% Similarity=0.569 Sum_probs=21.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 69 GHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 69 Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.-.++|+|++|+|||||++.+.+..
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4468999999999999999998843
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0025 Score=64.26 Aligned_cols=45 Identities=13% Similarity=0.142 Sum_probs=34.6
Q ss_pred CCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcH
Q 044030 194 RPKLLFLDEPTSGLD---SAASYYVMSRIAKLGQRDGIGRTIIASIHQPSS 241 (449)
Q Consensus 194 ~P~llllDEPtsgLD---~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~ 241 (449)
.|.++++||-=.=++ +..+..+.+.+++.+ +.|. .++++||.|.+
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~R-k~g~--~~~~~tQ~~~d 309 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIR-KYNG--SLIVISQNVID 309 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGG-GGTC--EEEEEESCGGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhh-hhCe--EEEEEcCCHHH
Confidence 578999999877774 667777778888776 4555 89999999753
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0035 Score=55.49 Aligned_cols=23 Identities=43% Similarity=0.601 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.++|+|++|+|||||++.+.|..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 58999999999999999999864
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0036 Score=54.56 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999999863
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0044 Score=56.53 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
.++|.||+||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999764
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0041 Score=55.14 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|+.|+|||||++.+.|..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999999864
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0041 Score=54.68 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.|.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999999754
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0041 Score=53.47 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
-++|+|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999974
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0046 Score=54.98 Aligned_cols=23 Identities=48% Similarity=0.534 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998754
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0037 Score=55.12 Aligned_cols=22 Identities=36% Similarity=0.585 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 044030 72 LAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
++|+|++|+|||||++.+.+..
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 6899999999999999999854
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0052 Score=55.54 Aligned_cols=25 Identities=36% Similarity=0.547 Sum_probs=21.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 69 GHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 69 Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+-+++|.|++||||||+.+.|+..+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998643
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0047 Score=53.85 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 37899999999999999999753
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.068 Score=53.54 Aligned_cols=26 Identities=42% Similarity=0.692 Sum_probs=23.0
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
++.-+.|.||+|+|||+|.++|+...
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhh
Confidence 45689999999999999999998753
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0043 Score=53.58 Aligned_cols=23 Identities=39% Similarity=0.488 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+-.
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998743
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0044 Score=55.14 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37999999999999999999854
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0044 Score=54.60 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999743
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0054 Score=53.66 Aligned_cols=24 Identities=38% Similarity=0.541 Sum_probs=21.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 044030 70 HLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 70 e~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
++++|.|+.||||||+.+.|+..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998643
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0044 Score=54.26 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998643
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0047 Score=53.05 Aligned_cols=21 Identities=33% Similarity=0.457 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 044030 72 LAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~ 92 (449)
++|+|++|+|||||++.+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999999863
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0054 Score=55.36 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=21.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 044030 69 GHLLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 69 Ge~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
..+++|.|++||||||+.+.|+-.
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999864
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0042 Score=57.12 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=22.3
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.+.++.|+||+||||||+.+.|+-.+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999998643
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0029 Score=55.60 Aligned_cols=23 Identities=39% Similarity=0.486 Sum_probs=20.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHc
Q 044030 69 GHLLAIMGPSGSGKTTLLDALAG 91 (449)
Q Consensus 69 Ge~~~IlGpnGaGKSTLL~~l~G 91 (449)
.--++|+|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999875
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0053 Score=56.08 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.++|+||+||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999997643
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0059 Score=53.22 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998743
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0053 Score=59.84 Aligned_cols=23 Identities=43% Similarity=0.676 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.++|+|++|+|||||+|.|.|..
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 59999999999999999999853
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0046 Score=53.78 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|+.|+|||||++.+.+..
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998743
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0051 Score=53.71 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998854
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0057 Score=54.27 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=21.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 044030 69 GHLLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 69 Ge~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
..+++|.|++||||||+.+.|+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999864
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0051 Score=53.88 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 48999999999999999999754
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0052 Score=53.41 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|+.|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48899999999999999999854
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0063 Score=57.73 Aligned_cols=25 Identities=32% Similarity=0.385 Sum_probs=22.5
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4668999999999999999999875
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0055 Score=59.77 Aligned_cols=24 Identities=42% Similarity=0.625 Sum_probs=21.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 044030 70 HLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 70 e~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-.++|+|++|+|||||+|.|.|..
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 379999999999999999999953
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0048 Score=58.61 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.++|+|++|||||||+|.|+|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999963
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0048 Score=54.80 Aligned_cols=24 Identities=38% Similarity=0.468 Sum_probs=21.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 044030 70 HLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 70 e~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998643
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0057 Score=54.10 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRLGS 95 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~~~ 95 (449)
-++|+|++|+|||||++.+.|....
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 3789999999999999999997643
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0053 Score=54.37 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++++|++|+|||||++.|++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48899999999999999999854
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0055 Score=53.53 Aligned_cols=23 Identities=26% Similarity=0.484 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999999854
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0055 Score=55.67 Aligned_cols=23 Identities=43% Similarity=0.608 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.++|+|++|+|||||++.|++..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999864
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0049 Score=58.90 Aligned_cols=23 Identities=39% Similarity=0.530 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||+|.|.|..
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38899999999999999998754
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0054 Score=53.93 Aligned_cols=23 Identities=26% Similarity=0.569 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0059 Score=54.64 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999998753
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0061 Score=54.24 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
-++|+|++|+|||||++.+++.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999876664
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0061 Score=54.68 Aligned_cols=23 Identities=35% Similarity=0.625 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999999854
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0061 Score=54.08 Aligned_cols=23 Identities=35% Similarity=0.408 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+++..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999999854
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0061 Score=53.74 Aligned_cols=26 Identities=31% Similarity=0.450 Sum_probs=22.1
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+.=-++|+|++|+|||||++.+.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 33468999999999999999999754
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0062 Score=54.03 Aligned_cols=23 Identities=39% Similarity=0.534 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 38999999999999999999854
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0049 Score=55.47 Aligned_cols=22 Identities=36% Similarity=0.629 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
.++|+|++|+|||||++.++|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999864
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0076 Score=56.60 Aligned_cols=25 Identities=32% Similarity=0.384 Sum_probs=22.0
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
++-.++|.||+||||||+.+.|+-.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999853
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0057 Score=61.42 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 044030 72 LAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
++|+|++|+|||||+|.|+|..
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999999853
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=95.51 E-value=0.006 Score=57.45 Aligned_cols=23 Identities=17% Similarity=0.452 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.++|+|++|||||||++.|.|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0071 Score=58.23 Aligned_cols=26 Identities=38% Similarity=0.571 Sum_probs=23.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCC
Q 044030 70 HLLAIMGPSGSGKTTLLDALAGRLGS 95 (449)
Q Consensus 70 e~~~IlGpnGaGKSTLL~~l~G~~~~ 95 (449)
..+.|.||+|+|||||.++|++....
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 68999999999999999999997643
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0059 Score=54.31 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
-++|+|++|+|||||++.+.+-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 4899999999999999999874
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0067 Score=57.63 Aligned_cols=23 Identities=39% Similarity=0.592 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.++|+|++|+|||||++.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999853
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0066 Score=53.28 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999999753
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0072 Score=56.92 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=21.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 044030 70 HLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 70 e~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-+++|.|++||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998744
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0061 Score=54.36 Aligned_cols=23 Identities=17% Similarity=0.455 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|+.|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37999999999999999998854
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0061 Score=53.90 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999999854
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0069 Score=53.05 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+-.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998643
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0074 Score=54.08 Aligned_cols=23 Identities=35% Similarity=0.408 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999999854
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0088 Score=52.31 Aligned_cols=27 Identities=30% Similarity=0.602 Sum_probs=23.1
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
..+..+.|.||+|+|||||++.++..+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999998754
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.43 E-value=0.0079 Score=54.68 Aligned_cols=24 Identities=25% Similarity=0.555 Sum_probs=21.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 044030 69 GHLLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 69 Ge~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
.-+++|.|+.||||||+.+.|+-.
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999999864
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=95.43 E-value=0.0066 Score=58.16 Aligned_cols=23 Identities=39% Similarity=0.690 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.++|+|.+|||||||+|.|+|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999853
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=95.41 E-value=0.0071 Score=54.25 Aligned_cols=22 Identities=36% Similarity=0.665 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
-++|+|++|+|||||++.++|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999973
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=95.40 E-value=0.0074 Score=53.50 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+-.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999998743
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.0072 Score=55.10 Aligned_cols=24 Identities=42% Similarity=0.625 Sum_probs=21.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 044030 70 HLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 70 e~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-.++|+|++|+|||||++.|++..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 378999999999999999998753
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.004 Score=56.74 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.++|+|++|+|||||++.|.|..
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=95.38 E-value=0.0084 Score=55.40 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
+++|.|++||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999864
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0071 Score=54.01 Aligned_cols=23 Identities=30% Similarity=0.611 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998753
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.36 E-value=0.0068 Score=54.45 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 48899999999999999999854
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.007 Score=58.61 Aligned_cols=23 Identities=30% Similarity=0.681 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.++|+|+.|||||||+|.|+|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.0078 Score=53.53 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37899999999999999999754
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.0071 Score=52.98 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
-++|+|++|+|||||++.+.+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999853
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=95.34 E-value=0.014 Score=53.51 Aligned_cols=36 Identities=25% Similarity=0.194 Sum_probs=28.7
Q ss_pred cceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcC
Q 044030 56 SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 56 ~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
...++..-.. ..|..++|+||+|||||||...|+..
T Consensus 22 ~~~lHa~~v~-~~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 22 RRSMHGVLVD-IYGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CCCEESEEEE-ETTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred ceeeeEEEEE-ECCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3456665544 46789999999999999999999865
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=95.34 E-value=0.0079 Score=52.56 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999998743
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.32 E-value=0.0072 Score=53.76 Aligned_cols=23 Identities=39% Similarity=0.437 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 47899999999999999999854
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=95.31 E-value=0.0081 Score=53.34 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|+.|+|||||++.+.+..
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998743
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.31 E-value=0.0081 Score=53.10 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|+.|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48899999999999999998854
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.31 E-value=0.008 Score=53.19 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
-++|+|++|+|||||++.+.+-
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999964
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.31 E-value=0.0079 Score=54.13 Aligned_cols=23 Identities=26% Similarity=0.553 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998753
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.30 E-value=0.008 Score=55.36 Aligned_cols=22 Identities=14% Similarity=0.442 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
.++|+|++|+|||||++.++|.
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999884
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=95.29 E-value=0.014 Score=57.73 Aligned_cols=26 Identities=38% Similarity=0.632 Sum_probs=23.5
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
++.+++|+||+|||||||...|+..+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 56799999999999999999999865
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.29 E-value=0.0082 Score=54.07 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999999753
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.29 E-value=0.0084 Score=53.55 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999998753
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.29 E-value=0.0061 Score=54.11 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999998864
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=95.28 E-value=0.0075 Score=54.26 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999854
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=95.28 E-value=0.0084 Score=53.39 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48899999999999999999854
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=95.27 E-value=0.0082 Score=53.34 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999854
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.0085 Score=53.71 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|+.|+|||||++.+.+..
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998754
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.0091 Score=54.83 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=21.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 69 GHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 69 Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
|-.++|+|++||||||+.+.|+-.+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998643
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=95.23 E-value=0.0096 Score=54.00 Aligned_cols=23 Identities=39% Similarity=0.475 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37999999999999999999854
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.23 E-value=0.0088 Score=57.55 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHc
Q 044030 69 GHLLAIMGPSGSGKTTLLDALAG 91 (449)
Q Consensus 69 Ge~~~IlGpnGaGKSTLL~~l~G 91 (449)
.-+++|.|++||||||+.+.|+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999983
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=95.23 E-value=0.005 Score=59.71 Aligned_cols=26 Identities=19% Similarity=0.446 Sum_probs=19.4
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
++-+++|.||+||||||+.+.|+..+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998743
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=95.22 E-value=0.0075 Score=53.14 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
-++|+|++|+|||||++.+.+.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999975
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.22 E-value=0.008 Score=54.51 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999988754
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=95.22 E-value=0.0023 Score=58.20 Aligned_cols=43 Identities=14% Similarity=0.220 Sum_probs=30.2
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCc
Q 044030 193 TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPS 240 (449)
Q Consensus 193 ~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~ 240 (449)
.+|.++++||.-. +|......+.+.+.+.. . +..+|++++++.
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~--~--~~~~i~~t~~~~ 167 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPP--E--HVKFLLATTDPQ 167 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCC--T--TEEEEEEESCGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCC--C--ceEEEEEeCChH
Confidence 3578999999755 78877777766665421 1 347888888753
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=95.21 E-value=0.0072 Score=52.78 Aligned_cols=22 Identities=27% Similarity=0.523 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
-++|+|++|+|||||++.+++.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999874
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=95.18 E-value=0.011 Score=54.87 Aligned_cols=28 Identities=25% Similarity=0.471 Sum_probs=23.5
Q ss_pred EecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 66 AKPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 66 i~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+++..++.|+||+||||+|.-+.|+-.+
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456789999999999999999998643
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=95.14 E-value=0.012 Score=54.30 Aligned_cols=28 Identities=43% Similarity=0.656 Sum_probs=24.3
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCCC
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRLG 94 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~~ 94 (449)
-+|-+++|.|++||||||+.+.|+..+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999999987653
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.14 E-value=0.011 Score=52.95 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998753
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=95.13 E-value=0.01 Score=54.29 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
.++|.|++||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999864
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.12 E-value=0.009 Score=53.97 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999854
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=95.12 E-value=0.0086 Score=57.35 Aligned_cols=23 Identities=30% Similarity=0.658 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.++|+|.+|+|||||++.|+|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=95.12 E-value=0.068 Score=50.02 Aligned_cols=53 Identities=15% Similarity=0.179 Sum_probs=42.2
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecC---------CcHHHHhhcCeEEEee
Q 044030 193 TRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQ---------PSSEVFQLFHNLCLLS 254 (449)
Q Consensus 193 ~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~---------~~~~i~~~~D~v~~l~ 254 (449)
.+.+++++||----.| +.+.++.+++ .| +.||++-++ +..++..++|.|.-|+
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~~-~g--i~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMAN-AG--KTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHHH-TT--CEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHHh-CC--CEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999876644 5566666654 44 499999999 8888999999998875
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.11 E-value=0.01 Score=52.75 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 48999999999999999988753
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=95.09 E-value=0.012 Score=56.67 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 044030 70 HLLAIMGPSGSGKTTLLDALAG 91 (449)
Q Consensus 70 e~~~IlGpnGaGKSTLL~~l~G 91 (449)
.++.|+|++||||||+.+.|+-
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.07 E-value=0.01 Score=54.01 Aligned_cols=22 Identities=36% Similarity=0.601 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
-++|+|++|+|||||++.+.+.
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999974
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.06 E-value=0.0095 Score=54.11 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+++..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999864
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=95.05 E-value=0.011 Score=52.81 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRLG 94 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~~ 94 (449)
-++|+|++|+|||||++.+.|...
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 488999999999999999998653
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=95.05 E-value=0.013 Score=54.34 Aligned_cols=26 Identities=35% Similarity=0.558 Sum_probs=22.3
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.+..+.|+|+.||||||+.+.|+-.+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999998643
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=95.04 E-value=0.011 Score=53.55 Aligned_cols=23 Identities=30% Similarity=0.310 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.++|+|++|+|||||++.+++..
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998754
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=95.03 E-value=0.0071 Score=53.10 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=9.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999864
|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
Probab=95.02 E-value=0.042 Score=50.82 Aligned_cols=53 Identities=15% Similarity=0.280 Sum_probs=41.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEec---------CCcHHHHhhcCeEEEee
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIH---------QPSSEVFQLFHNLCLLS 254 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH---------~~~~~i~~~~D~v~~l~ 254 (449)
+.+++++||--- +|+. +++.++.++.. |. .||++-+ .+...+..++|.|.-|+
T Consensus 101 ~~dvViIDEaQF-~~~~----~V~~l~~l~~~-~~--~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD----IVEVVQVLANR-GY--RVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTT----HHHHHHHHHHT-TC--EEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHhhC-CC--EEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 579999999865 6543 33677777754 54 9999999 67888999999998876
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=94.98 E-value=0.0098 Score=53.18 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
-++|+|++|+|||||++.+.+-
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCSS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999763
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.98 E-value=0.011 Score=51.59 Aligned_cols=27 Identities=26% Similarity=0.524 Sum_probs=22.9
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
..+..+.|.||+|+|||||++.++..+
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345677899999999999999998765
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=94.95 E-value=0.011 Score=53.21 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999999854
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.011 Score=55.24 Aligned_cols=28 Identities=36% Similarity=0.564 Sum_probs=21.7
Q ss_pred EecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 66 AKPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 66 i~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
..+|-+++|.|++||||||+.+.|+..+
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999999998765
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=94.92 E-value=0.012 Score=55.84 Aligned_cols=23 Identities=26% Similarity=0.615 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.++|+|++|+|||||++.|.|..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999864
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=94.89 E-value=0.015 Score=60.11 Aligned_cols=36 Identities=25% Similarity=0.442 Sum_probs=29.9
Q ss_pred ceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 57 SILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 57 ~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.+++.+ ..+-+|+..+|+||+|+|||||++.|++..
T Consensus 140 r~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 140 KVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp HHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred hHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhh
Confidence 355555 566789999999999999999999998754
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=94.88 E-value=0.013 Score=58.03 Aligned_cols=24 Identities=42% Similarity=0.679 Sum_probs=21.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 044030 70 HLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 70 e~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.+++|.||+|||||||.+.|+..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 379999999999999999999864
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=94.88 E-value=0.013 Score=59.67 Aligned_cols=27 Identities=19% Similarity=0.331 Sum_probs=23.5
Q ss_pred EecCeEEEEECCCCCcHHHHHHHHHcC
Q 044030 66 AKPGHLLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 66 i~~Ge~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
-.+..++.|+|++||||||+.+.|+..
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 345789999999999999999999764
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=94.87 E-value=0.014 Score=54.87 Aligned_cols=27 Identities=26% Similarity=0.490 Sum_probs=24.2
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCCC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRLG 94 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~~ 94 (449)
+|.+++|.|++||||||+.+.|+..+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999987653
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=94.85 E-value=0.0066 Score=55.16 Aligned_cols=23 Identities=26% Similarity=0.510 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.++|..
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998643
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.85 E-value=0.012 Score=52.22 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999999753
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.84 E-value=0.014 Score=53.60 Aligned_cols=22 Identities=36% Similarity=0.665 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
-++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999974
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=94.84 E-value=0.012 Score=55.88 Aligned_cols=23 Identities=26% Similarity=0.625 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.++++|++|+|||||+|.|.|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999854
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=94.81 E-value=0.017 Score=56.73 Aligned_cols=25 Identities=48% Similarity=0.643 Sum_probs=22.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 69 GHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 69 Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+.+++|+||+|||||||...|+-.+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4578999999999999999999764
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=94.78 E-value=0.004 Score=61.03 Aligned_cols=42 Identities=12% Similarity=0.119 Sum_probs=32.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCc
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPS 240 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~ 240 (449)
+++++++|| ...|++.....+.+.+.+... ...+|++++++.
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~----~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSG----VTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT----TEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCC----CceEEEEeCchh
Confidence 567999999 788999988888888877542 235677777754
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=94.72 E-value=0.017 Score=53.12 Aligned_cols=23 Identities=39% Similarity=0.651 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
++.|+||+||||+|.-+.|+-.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999998643
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=94.68 E-value=0.015 Score=53.02 Aligned_cols=25 Identities=32% Similarity=0.554 Sum_probs=22.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 69 GHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 69 Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+-+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3578999999999999999998754
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=94.67 E-value=0.015 Score=53.14 Aligned_cols=24 Identities=42% Similarity=0.631 Sum_probs=20.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 044030 70 HLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 70 e~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-.++|+|++|+|||||++.+++..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998753
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.67 E-value=0.018 Score=53.70 Aligned_cols=26 Identities=27% Similarity=0.333 Sum_probs=23.1
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+|.+++|-|+.||||||+.+.|+..+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 36689999999999999999999765
|
| >4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* | Back alignment and structure |
|---|
Probab=94.67 E-value=0.018 Score=53.30 Aligned_cols=27 Identities=30% Similarity=0.433 Sum_probs=24.1
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCCC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRLG 94 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~~ 94 (449)
+|.++++-|++||||||+.+.|+..+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999987653
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.66 E-value=0.016 Score=53.07 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999854
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.65 E-value=0.014 Score=52.46 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 48999999999999999998753
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=94.63 E-value=0.007 Score=54.14 Aligned_cols=22 Identities=23% Similarity=0.548 Sum_probs=4.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
-++|+|++|+|||||++.+.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999875
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=94.61 E-value=0.01 Score=52.55 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
-++|+|++|+|||||++.+.+-
T Consensus 24 ~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999653
|
| >3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* | Back alignment and structure |
|---|
Probab=94.60 E-value=0.018 Score=53.36 Aligned_cols=28 Identities=36% Similarity=0.449 Sum_probs=25.1
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCCC
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRLG 94 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~~ 94 (449)
.+|.++.+-|++||||||+.+.|+..+.
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3688999999999999999999998764
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=94.60 E-value=0.018 Score=56.75 Aligned_cols=24 Identities=46% Similarity=0.653 Sum_probs=21.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 044030 70 HLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 70 e~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.+++|+||+|||||||.+.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999864
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=94.60 E-value=0.015 Score=55.39 Aligned_cols=25 Identities=28% Similarity=0.570 Sum_probs=22.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCC
Q 044030 70 HLLAIMGPSGSGKTTLLDALAGRLG 94 (449)
Q Consensus 70 e~~~IlGpnGaGKSTLL~~l~G~~~ 94 (449)
-.++++|.+|+|||||+|.|.|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 4789999999999999999999653
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=94.55 E-value=0.015 Score=59.91 Aligned_cols=22 Identities=36% Similarity=0.750 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
.++|+|++|+|||||+|.|+|.
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6899999999999999999984
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=94.54 E-value=0.022 Score=53.11 Aligned_cols=27 Identities=37% Similarity=0.405 Sum_probs=24.0
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.+|-+++|.|++||||||+.+.|+..+
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999998755
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.50 E-value=0.26 Score=59.22 Aligned_cols=36 Identities=33% Similarity=0.396 Sum_probs=30.6
Q ss_pred eeeeeeE--EEecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 58 ILEDLTG--YAKPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 58 iL~~vs~--~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-|+.+.. =+++|+++.|.|++|+|||||+..++...
T Consensus 719 eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~ 756 (2050)
T 3cmu_A 719 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4666664 69999999999999999999998888754
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=94.46 E-value=0.017 Score=52.19 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
-++|+|++|+|||||++.+.+.
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5889999999999999999864
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=94.45 E-value=0.018 Score=52.43 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48899999999999999998753
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=94.44 E-value=0.014 Score=55.13 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=23.6
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+++-+++|.|+.||||||+.+.|+..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 467899999999999999999998765
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=94.43 E-value=0.0048 Score=58.29 Aligned_cols=29 Identities=38% Similarity=0.647 Sum_probs=23.1
Q ss_pred eEEEecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 63 TGYAKPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 63 s~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+...+.| +.|.||+|+|||||.++|+...
T Consensus 40 ~~~~~~~--vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 40 GAKIPKG--VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp SCCCCSC--CCCBCSSCSSHHHHHHHHHHHH
T ss_pred CCCCCce--EEEECCCCCcHHHHHHHHHHHh
Confidence 3344445 7799999999999999999854
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.40 E-value=0.034 Score=49.84 Aligned_cols=33 Identities=21% Similarity=0.046 Sum_probs=25.5
Q ss_pred eeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHc
Q 044030 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAG 91 (449)
Q Consensus 58 iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G 91 (449)
.++..-. .-.|.-+.|.|+||+|||||.-.|..
T Consensus 6 ~lHas~v-~v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 6 TWHANFL-VIDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEESEEE-EETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEE-EECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 4444433 34688899999999999999988875
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.38 E-value=0.018 Score=51.98 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+-.
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998743
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=94.24 E-value=0.027 Score=55.14 Aligned_cols=25 Identities=40% Similarity=0.529 Sum_probs=22.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 69 GHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 69 Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
..+++|+||+|||||||...|+..+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 3578999999999999999999754
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=94.22 E-value=0.025 Score=50.78 Aligned_cols=53 Identities=15% Similarity=0.238 Sum_probs=36.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCc---------HHHHhhcCeEEEee
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPS---------SEVFQLFHNLCLLS 254 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~---------~~i~~~~D~v~~l~ 254 (449)
+++++++||-=. +++ .+++.|+.++++ |. .|+++.++.. ..+...+|.+.-|+
T Consensus 76 ~~dvviIDE~Q~-~~~----~~~~~l~~l~~~-~~--~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNP----SLFEVVKDLLDR-GI--DVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TEEEEEECCGGG-SCT----THHHHHHHHHHT-TC--EEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCH----HHHHHHHHHHHC-CC--CEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 578999999743 443 366677777755 54 8999888432 44666788887665
|
| >3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* | Back alignment and structure |
|---|
Probab=93.88 E-value=0.03 Score=56.74 Aligned_cols=24 Identities=33% Similarity=0.580 Sum_probs=21.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 044030 70 HLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 70 e~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.+++|+||+|||||||.+.|+-.+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 478999999999999999998754
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=93.84 E-value=0.027 Score=57.08 Aligned_cols=41 Identities=10% Similarity=0.151 Sum_probs=29.6
Q ss_pred HHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEE
Q 044030 156 RAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFL 200 (449)
Q Consensus 156 ~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llll 200 (449)
.+.++++.++.... ...+|.++..++.-...+...|-++++
T Consensus 181 ~~~~~l~~l~~~~~----~~~~~~~e~~~l~~~~~~~~kP~i~v~ 221 (397)
T 1wxq_A 181 DVWEAMHKLNLPED----PTKWSQDDLLAFASEIRRVNKPMVIAA 221 (397)
T ss_dssp HHHHHHHHTTCCSC----GGGCCHHHHHHHHHHHHHHHSCEEEEE
T ss_pred HHHHHHHHhccCCc----cccCCHHHHHHHHHhhhccCCCEEEEE
Confidence 45666777766433 347899998888777777778988887
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=93.82 E-value=0.034 Score=55.27 Aligned_cols=26 Identities=38% Similarity=0.590 Sum_probs=22.8
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
..-+++|+|++|+|||||++.|++.+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 44589999999999999999998764
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.79 E-value=0.03 Score=47.90 Aligned_cols=42 Identities=14% Similarity=0.118 Sum_probs=29.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCc
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPS 240 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~ 240 (449)
+..+|++||. ..|++..+..+.+.|.... . +..+|++|+.+.
T Consensus 76 ~~g~l~ldei-~~l~~~~q~~Ll~~l~~~~--~--~~~~I~~t~~~~ 117 (145)
T 3n70_A 76 QGGTLVLSHP-EHLTREQQYHLVQLQSQEH--R--PFRLIGIGDTSL 117 (145)
T ss_dssp TTSCEEEECG-GGSCHHHHHHHHHHHHSSS--C--SSCEEEEESSCH
T ss_pred CCcEEEEcCh-HHCCHHHHHHHHHHHhhcC--C--CEEEEEECCcCH
Confidence 4578999998 4688888888888883321 1 236788887753
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=93.77 E-value=0.033 Score=53.45 Aligned_cols=27 Identities=37% Similarity=0.567 Sum_probs=23.0
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+++.-+.|.||+|+|||||.++++..+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 345578999999999999999998765
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.71 E-value=0.036 Score=53.39 Aligned_cols=25 Identities=32% Similarity=0.417 Sum_probs=22.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 69 GHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 69 Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+-.++++|.+|+|||||+|.|.|..
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CceEEEEecCCCchHHHHHHHhcCc
Confidence 3468999999999999999999964
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=93.70 E-value=0.021 Score=56.59 Aligned_cols=23 Identities=30% Similarity=0.658 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.++|+|..|+|||||++.|+|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999964
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=93.69 E-value=0.08 Score=54.92 Aligned_cols=71 Identities=17% Similarity=0.224 Sum_probs=52.1
Q ss_pred CCCCChHHHHHHHH--HHHHHh---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEe
Q 044030 174 IRRLSGGQKRRVSI--SIEILT---------------RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASI 236 (449)
Q Consensus 174 ~~~LSgGerqRv~i--a~aL~~---------------~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~t 236 (449)
.+++||||+|-.-+ +.+++. .-.++++||. +-+|.......+++++++ |.-+|+++
T Consensus 377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l------glQliiat 449 (483)
T 3euj_A 377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL------DMQLLIAA 449 (483)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT------TCEEEEEE
T ss_pred cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc------CCEEEEEC
Confidence 37899999997444 334333 1147999999 999999999999999865 33666776
Q ss_pred cCCcHHHHhhcCeEEEee
Q 044030 237 HQPSSEVFQLFHNLCLLS 254 (449)
Q Consensus 237 H~~~~~i~~~~D~v~~l~ 254 (449)
=. .+....|.++.+-
T Consensus 450 P~---~i~p~v~~~~~~~ 464 (483)
T 3euj_A 450 PE---NISPERGTTYKLV 464 (483)
T ss_dssp SS---SCCCSSSEEEECC
T ss_pred cc---hhhhccCceEEEE
Confidence 44 3566788887764
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=93.68 E-value=0.034 Score=52.02 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-+||+||+||||||+.+.|+-.+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998643
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.75 E-value=0.012 Score=52.86 Aligned_cols=21 Identities=29% Similarity=0.376 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 044030 71 LLAIMGPSGSGKTTLLDALAG 91 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G 91 (449)
-++|+|++|+|||||++.+.+
T Consensus 32 ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 489999999999999998875
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=93.66 E-value=0.029 Score=57.35 Aligned_cols=23 Identities=35% Similarity=0.686 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.++|+|++|+|||||+|.|+|..
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~ 27 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGER 27 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=93.59 E-value=0.038 Score=53.70 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=20.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 044030 70 HLLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 70 e~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
--++|+|++|+|||||++.+.+.
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999998875
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=93.59 E-value=0.024 Score=51.63 Aligned_cols=21 Identities=43% Similarity=0.841 Sum_probs=18.6
Q ss_pred EEEECCCCCcHHHHHHH-HHcC
Q 044030 72 LAIMGPSGSGKTTLLDA-LAGR 92 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~-l~G~ 92 (449)
++|+|++|+|||||++. +.|.
T Consensus 18 i~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 18 LVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 78999999999999998 6554
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=93.54 E-value=0.17 Score=55.39 Aligned_cols=23 Identities=43% Similarity=0.717 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.+.|.||+|+|||+|.++|+...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999865
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.52 E-value=0.008 Score=53.90 Aligned_cols=23 Identities=39% Similarity=0.534 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||++.+.+..
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=93.41 E-value=0.042 Score=51.99 Aligned_cols=26 Identities=35% Similarity=0.460 Sum_probs=22.4
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcC
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
.+..-+.|.||+|+|||||.++|+..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 44557889999999999999999875
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=93.28 E-value=0.049 Score=55.93 Aligned_cols=27 Identities=37% Similarity=0.487 Sum_probs=24.0
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCCC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRLG 94 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~~ 94 (449)
++.+++++|++|+||||++..|+..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999997653
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=93.27 E-value=0.034 Score=57.47 Aligned_cols=25 Identities=36% Similarity=0.569 Sum_probs=21.9
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
+|=-++|+|++|+|||||+|.|+|.
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3445999999999999999999985
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=93.26 E-value=0.049 Score=53.06 Aligned_cols=25 Identities=40% Similarity=0.489 Sum_probs=22.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 69 GHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 69 Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+.-+.|.||+|+|||+|+++|+...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998754
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=93.24 E-value=0.035 Score=59.11 Aligned_cols=34 Identities=38% Similarity=0.618 Sum_probs=26.6
Q ss_pred ceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 57 SILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 57 ~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.+|.+++ .+--.++|+|++|+|||||+|.|+|..
T Consensus 29 ~~L~~i~---~~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 29 KILSAIT---QPMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp HHHHTCC---SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHHhcc---CCCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 3565542 234578999999999999999999964
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=93.21 E-value=0.041 Score=53.05 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=21.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 69 GHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 69 Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
...+.|.||+|+|||+|.++|+..+
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467788999999999999999754
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=93.16 E-value=0.039 Score=58.32 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=21.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 044030 70 HLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 70 e~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-.++|+|..|+|||||+|.|.|..
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 479999999999999999999964
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=93.16 E-value=0.046 Score=53.85 Aligned_cols=28 Identities=36% Similarity=0.586 Sum_probs=24.6
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCCC
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRLG 94 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~~ 94 (449)
.+|..+.|.||+|+|||||.+.++..+.
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4567899999999999999999998653
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=93.09 E-value=0.031 Score=57.22 Aligned_cols=25 Identities=36% Similarity=0.521 Sum_probs=22.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCC
Q 044030 70 HLLAIMGPSGSGKTTLLDALAGRLG 94 (449)
Q Consensus 70 e~~~IlGpnGaGKSTLL~~l~G~~~ 94 (449)
.+++|+|++|+||||+...|++.+.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5999999999999999999998763
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=93.05 E-value=0.046 Score=52.15 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=21.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 69 GHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 69 Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+.-+.|.||+|+|||||.++++..+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 3467899999999999999999865
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=93.05 E-value=0.053 Score=52.85 Aligned_cols=27 Identities=37% Similarity=0.610 Sum_probs=22.9
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.+..-+.|.||+|+|||+|.++++...
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 345568999999999999999999753
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 449 | ||||
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 1e-37 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 2e-36 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 7e-33 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 1e-32 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 1e-31 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 1e-31 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 5e-30 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 7e-30 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 1e-29 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 1e-29 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 2e-29 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 3e-29 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 1e-28 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 2e-28 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 3e-27 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 3e-27 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 8e-27 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 2e-26 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 4e-26 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 2e-21 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 3e-11 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-05 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.004 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 3e-05 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-04 | |
| d1knqa_ | 171 | c.37.1.17 (A:) Gluconate kinase {Escherichia coli | 3e-05 | |
| d1zp6a1 | 176 | c.37.1.25 (A:6-181) Hypothetical protein Atu3015 { | 4e-05 | |
| d1qhxa_ | 178 | c.37.1.3 (A:) Chloramphenicol phosphotransferase { | 1e-04 | |
| d1xjca_ | 165 | c.37.1.10 (A:) Molybdopterin-guanine dinucleotide | 2e-04 | |
| d1znwa1 | 182 | c.37.1.1 (A:20-201) Guanylate kinase {Mycobacteriu | 2e-04 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 3e-04 | |
| d2p67a1 | 327 | c.37.1.10 (A:1-327) LAO/AO transport system kinase | 4e-04 | |
| d2bdta1 | 176 | c.37.1.25 (A:1-176) Hypothetical protein BH3686 {B | 5e-04 | |
| d1s96a_ | 205 | c.37.1.1 (A:) Guanylate kinase {Escherichia coli [ | 6e-04 | |
| d1np6a_ | 170 | c.37.1.10 (A:) Molybdopterin-guanine dinucleotide | 9e-04 | |
| d1q3ta_ | 223 | c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae | 0.001 | |
| d2qm8a1 | 323 | c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylo | 0.001 | |
| d1w44a_ | 321 | c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [Ta | 0.001 | |
| d1ckea_ | 225 | c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: | 0.001 | |
| d1y63a_ | 174 | c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishma | 0.002 | |
| d1m8pa3 | 183 | c.37.1.15 (A:391-573) ATP sulfurylase C-terminal d | 0.002 | |
| d1lvga_ | 190 | c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculu | 0.002 | |
| d1lw7a2 | 192 | c.37.1.1 (A:220-411) Transcriptional regulator Nad | 0.002 | |
| d1gkya_ | 186 | c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Sac | 0.002 | |
| d1egaa1 | 179 | c.37.1.8 (A:4-182) GTPase Era, N-terminal domain { | 0.002 | |
| d1kgda_ | 178 | c.37.1.1 (A:) Guanylate kinase-like domain of Cask | 0.002 | |
| d1cr2a_ | 277 | c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), | 0.003 | |
| d1f5na2 | 277 | c.37.1.8 (A:7-283) Interferon-induced guanylate-bi | 0.004 | |
| d1n0ua2 | 341 | c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N- | 0.004 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 135 bits (341), Expect = 1e-37
Identities = 54/214 (25%), Positives = 97/214 (45%), Gaps = 12/214 (5%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA 113
G+ + + L K G L ++GPSG GKTT L +AG + G+I
Sbjct: 17 GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG---LEEPTEGRIYFGDRDVTYL 73
Query: 114 YGTS---AYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAM 170
+ V Q + +TV E + + +++ PK + +R + +++ +
Sbjct: 74 PPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELL 130
Query: 171 NTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGR 230
N +LSGGQ++RV+++ I+ P +L +DEP S LD+ + + I KL Q+ +
Sbjct: 131 NRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKV-- 188
Query: 231 TIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264
T I H E + + +++ GQ + G
Sbjct: 189 TTIYVTHDQ-VEAMTMGDRIAVMNRGQLLQIGSP 221
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 131 bits (331), Expect = 2e-36
Identities = 59/233 (25%), Positives = 103/233 (44%), Gaps = 19/233 (8%)
Query: 41 KDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQT 100
K++T T + L+++ K G ++IMGPSGSGK+T+L+ + D
Sbjct: 5 KNVTKTY--KMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGC---LDKPTE 59
Query: 101 GKILINGHK---------KALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKS 151
G++ I+ K + +V Q LI LT E V + M
Sbjct: 60 GEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGE 119
Query: 152 DKKERAEVTIREMGLQDAM-NTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSA 210
++++RA ++ L++ N + +LSGGQ++RV+I+ + P ++ D+PT LDS
Sbjct: 120 ERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSK 179
Query: 211 ASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263
+M + KL + DG T++ H V + + L G+
Sbjct: 180 TGEKIMQLLKKLNEEDGK--TVVVVTHDI--NVARFGERIIYLKDGEVEREEK 228
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 122 bits (307), Expect = 7e-33
Identities = 55/228 (24%), Positives = 105/228 (46%), Gaps = 17/228 (7%)
Query: 45 VTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKIL 104
+T V + + L +++ + G + ++G SG+GK+TL+ + G +L
Sbjct: 7 ITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE---RPTEGSVL 63
Query: 105 INGH--------KKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKER 156
++G + A + Q L+++ TV V +L PK + K R
Sbjct: 64 VDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRR 120
Query: 157 AEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVM 216
+ +GL D ++ LSGGQK+RV+I+ + + PK+L DE TS LD A + ++
Sbjct: 121 VTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSIL 180
Query: 217 SRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264
+ + +R G+ TI+ H+ V ++ + ++S G+ +
Sbjct: 181 ELLKDINRRLGL--TILLITHEM-DVVKRICDCVAVISNGELIEQDTV 225
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 122 bits (306), Expect = 1e-32
Identities = 55/228 (24%), Positives = 95/228 (41%), Gaps = 20/228 (8%)
Query: 41 KDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQT 100
KDL I G IL+ ++ + G + ++GP+G+GKTT L ++ + +
Sbjct: 6 KDLRKRI------GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLI---KPSS 56
Query: 101 GKILING----HKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKER 156
G + + G + +Y+ ++ + E + + A S+ +E
Sbjct: 57 GIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEM 113
Query: 157 AEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVM 216
E GL + + R+ S G R++ I+ ++ P+L LDEPTSGLD + V
Sbjct: 114 VERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVR 173
Query: 217 SRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264
+ + Q TI+ S H EV L + L+ G V G
Sbjct: 174 KILKQASQEG---LTILVSSHNM-LEVEFLCDRIALIHNGTIVETGTV 217
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 119 bits (299), Expect = 1e-31
Identities = 47/227 (20%), Positives = 93/227 (40%), Gaps = 23/227 (10%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING------ 107
G L+ ++ G + I+GP+GSGK+TL++ + G L +D G++
Sbjct: 15 GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADE---GRVYFENKDITNK 71
Query: 108 HKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTM----------PKSDKKERA 157
L + Q + +TV E + + + + E+A
Sbjct: 72 EPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKA 131
Query: 158 EVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMS 217
+ + L + + LSGGQ + V I ++T PK++ +DEP +G+ ++ + +
Sbjct: 132 FKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFN 191
Query: 218 RIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264
+ +L + G T + H+ V +L ++ GQ + G
Sbjct: 192 HVLELKAK---GITFLIIEHRL-DIVLNYIDHLYVMFNGQIIAEGRG 234
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 120 bits (301), Expect = 1e-31
Identities = 47/229 (20%), Positives = 87/229 (37%), Gaps = 29/229 (12%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTS 117
+L+++ + G +LAI G +GSGKT+LL + G L G I +G
Sbjct: 51 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGEL---EASEGIIKHSGRV-------- 99
Query: 118 AYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRR- 176
++ +Q ++ T+KE + + D + ++ + NT +
Sbjct: 100 SFCSQFSWIMPG-TIKENIIFGVSY---DEYRYKSVVKACQLQQDITKFAEQDNTVLGEG 155
Query: 177 ---LSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTII 233
LSGGQ+ R+S++ + L LD P LD V +T I
Sbjct: 156 GVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMA---NKTRI 212
Query: 234 ASIHQPSSEVFQLFHNLCLLSAGQTVYFGPAT----AANEFFA-FNGFP 277
+ E + + +L G + ++G + +F + G+
Sbjct: 213 LVTSKM--EHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLMGYD 259
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 113 bits (284), Expect = 5e-30
Identities = 41/180 (22%), Positives = 82/180 (45%), Gaps = 11/180 (6%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTS 117
+LE +T + G+++ GP+G GKTTLL ++ L + I+ NG G
Sbjct: 16 VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGE---IIYNGVPITKVKGKI 72
Query: 118 AYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRL 177
++ ++ + ++V++ + A L K + + + D + ++ L
Sbjct: 73 FFLPEEIIVPRKISVEDYLKAVASL-----YGVKVNKNEIMDALESVEVLD-LKKKLGEL 126
Query: 178 SGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIH 237
S G RRV ++ +L ++ LD+P +D + + V+ I ++ + GI II+S
Sbjct: 127 SQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGI--VIISSRE 184
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 114 bits (286), Expect = 7e-30
Identities = 54/232 (23%), Positives = 98/232 (42%), Gaps = 16/232 (6%)
Query: 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGS 95
+ L + L V G+ ++ + G ++ ++G +G+GKTT L A+AG + +
Sbjct: 5 IVLEVQSLHVYY------GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA 58
Query: 96 DTRQTGKILINGHKK---ALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSD 152
+ + K + A V + + LTV E + A + +
Sbjct: 59 QKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKD---KEGI 115
Query: 153 KKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAAS 212
K++ + L++ + LSGG+++ ++I +++RPKLL +DEP+ GL
Sbjct: 116 KRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILV 175
Query: 213 YYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264
V I K+ Q G TI+ ++ H +L GQ V G A
Sbjct: 176 SEVFEVIQKINQE---GTTILLVEQNA-LGALKVAHYGYVLETGQIVLEGKA 223
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 114 bits (286), Expect = 1e-29
Identities = 59/230 (25%), Positives = 98/230 (42%), Gaps = 18/230 (7%)
Query: 53 KGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH---- 108
+ IL+D+ + G +A +G SG GK+TL++ + +G+ILI+GH
Sbjct: 28 DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLI---PRFYDVTSGQILIDGHNIKD 84
Query: 109 KKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREM--GL 166
+ + Q D ++ + TVKE + + + ++ K A I + G
Sbjct: 85 FLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGY 144
Query: 167 QDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRD 226
+ R +LSGGQK+R+SI+ L P +L LDE TS LD + + + L +
Sbjct: 145 DTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK-- 202
Query: 227 GIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANEFFAFNGF 276
RT + H+ S + ++ G V G E A G
Sbjct: 203 --DRTTLIVAHRLS--TITHADKIVVIENGHIVETGT---HRELIAKQGA 245
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 113 bits (285), Expect = 1e-29
Identities = 61/243 (25%), Positives = 102/243 (41%), Gaps = 34/243 (13%)
Query: 41 KDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQT 100
DL G +L+ ++ A+ G +++I+G SGSGK+T L + +
Sbjct: 6 IDLHKRY------GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFL---EKPSE 56
Query: 101 GKILINGHKKALAYGTS------------------AYVTQDDTLITTLTVKEAVYYSAQL 142
G I++NG L V Q L + +TV E V +
Sbjct: 57 GAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQ 116
Query: 143 QLPDTMPKSDKKERAEVTIREMGLQD-AMNTRIRRLSGGQKRRVSISIEILTRPKLLFLD 201
L + K D +ERA + ++G+ + A LSGGQ++RVSI+ + P +L D
Sbjct: 117 VLG--LSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFD 174
Query: 202 EPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYF 261
EPTS LD V+ + +L + G+T++ H+ + ++ L G+
Sbjct: 175 EPTSALDPELVGEVLRIMQQLAEE---GKTMVVVTHEM-GFARHVSSHVIFLHQGKIEEE 230
Query: 262 GPA 264
G
Sbjct: 231 GDP 233
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 113 bits (284), Expect = 2e-29
Identities = 53/226 (23%), Positives = 95/226 (42%), Gaps = 19/226 (8%)
Query: 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTS 117
L ++ G +A++G SGSGK+T+ + D IL++GH S
Sbjct: 30 ALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGH---ILMDGHDLREYTLAS 86
Query: 118 -----AYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREM--GLQDAM 170
A V+Q+ L Y + + + ++ + A I +M GL +
Sbjct: 87 LRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTII 146
Query: 171 NTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGR 230
LSGGQ++R++I+ +L +L LDE TS LD+ + + + + +L + R
Sbjct: 147 GENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK----NR 202
Query: 231 TIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANEFFAFNGF 276
T + H+ S + + ++ G V G +E A +G
Sbjct: 203 TSLVIAHRLS--TIEQADEIVVVEDGIIVERGT---HSELLAQHGV 243
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 112 bits (281), Expect = 3e-29
Identities = 55/220 (25%), Positives = 99/220 (45%), Gaps = 18/220 (8%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA 113
G + + +++ K G + ++GPSG GKTT L +AG Q I I A
Sbjct: 14 GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQ---IYIGDKLVADP 70
Query: 114 ---------YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREM 164
A V Q L +TV + + + +L+ +P+ + +R +
Sbjct: 71 EKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELL 127
Query: 165 GLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQ 224
GL + +N + R LSGGQ++RV++ I+ +P++ +DEP S LD+ + + + KL +
Sbjct: 128 GLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQR 187
Query: 225 RDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264
+ G+ T I H E + + +++ G G
Sbjct: 188 QLGV--TTIYVTHDQ-VEAMTMGDRIAVMNRGVLQQVGSP 224
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 110 bits (276), Expect = 1e-28
Identities = 58/214 (27%), Positives = 93/214 (43%), Gaps = 12/214 (5%)
Query: 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH---KK 110
G + +D+ G + +GPSG GK+TLL +AG +T +G + I
Sbjct: 11 GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL---ETITSGDLFIGEKRMNDT 67
Query: 111 ALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAM 170
A V Q L L+V E + + +L K +R + L +
Sbjct: 68 PPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLL 124
Query: 171 NTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGR 230
+ + + LSGGQ++RV+I ++ P + LDEP S LD+A + I++L +GR
Sbjct: 125 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRL--HKRLGR 182
Query: 231 TIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264
T+I H E L + +L AG+ G
Sbjct: 183 TMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKP 215
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 109 bits (274), Expect = 2e-28
Identities = 57/222 (25%), Positives = 90/222 (40%), Gaps = 30/222 (13%)
Query: 56 SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH------K 109
S+ L L+G + G +L ++GP+G+GK+TLL +AG T G I G
Sbjct: 12 STRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM----TSGKGSIQFAGQPLEAWSA 67
Query: 110 KALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDA 169
LA AY++Q T V + + E + L D
Sbjct: 68 TKLALHR-AYLSQQQTPPFATPVWHYLTLH--------QHDKTRTELLNDVAGALALDDK 118
Query: 170 MNTRIRRLSGGQKRRVSISIEIL-------TRPKLLFLDEPTSGLDSAASYYVMSRIAKL 222
+ +LSGG+ +RV ++ +L +LL LDEP + LD A + ++ L
Sbjct: 119 LGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL 178
Query: 223 GQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264
Q+ G I+ S H + + H LL G+ + G
Sbjct: 179 CQQ---GLAIVMSSHDL-NHTLRHAHRAWLLKGGKMLASGRR 216
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 106 bits (267), Expect = 3e-27
Identities = 56/219 (25%), Positives = 102/219 (46%), Gaps = 17/219 (7%)
Query: 52 KKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH--- 108
K S IL+++ K G ++ I+G SGSGK+TL + + G++LI+GH
Sbjct: 12 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFY---IPENGQVLIDGHDLA 68
Query: 109 --KKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREM-- 164
V QD+ L+ ++ + + + + + + K A I E+
Sbjct: 69 LADPNWLRRQVGVVLQDNVLLN-RSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELRE 127
Query: 165 GLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQ 224
G + + LSGGQ++R++I+ ++ PK+L DE TS LD + + +M + K+ +
Sbjct: 128 GYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK 187
Query: 225 RDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263
GRT+I H+ S + + ++ G+ V G
Sbjct: 188 ----GRTVIIIAHRLS--TVKNADRIIVMEKGKIVEQGK 220
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 107 bits (268), Expect = 3e-27
Identities = 48/235 (20%), Positives = 99/235 (42%), Gaps = 21/235 (8%)
Query: 51 GKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH-- 108
+ +L+ LT +PG + A++GP+GSGK+T+ L G++L++G
Sbjct: 22 PNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLY---QPTGGQLLLDGKPL 78
Query: 109 ---KKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMG 165
+ + A V Q+ + +++E + Y + P + ++ G
Sbjct: 79 PQYEHRYLHRQVAAVGQEPQVFG-RSLQENIAYGLTQK-PTMEEITAAAVKSGAHSFISG 136
Query: 166 LQDAMNTRIRR----LSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAK 221
L +T + LSGGQ++ V+++ ++ +P +L LD+ TS LD+ + V + +
Sbjct: 137 LPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYE 196
Query: 222 LGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANEFFAFNGF 276
+R R+++ S + + ++ L G G + G
Sbjct: 197 SPER--YSRSVLLITQHLS--LVEQADHILFLEGGAIREGGT---HQQLMEKKGC 244
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 105 bits (264), Expect = 8e-27
Identities = 56/221 (25%), Positives = 99/221 (44%), Gaps = 17/221 (7%)
Query: 52 KKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHK-- 109
KKG L+++ + G I+GPSG+GKTT + +AG D TG++ +
Sbjct: 14 KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGL---DVPSTGELYFDDRLVA 70
Query: 110 ------KALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIRE 163
V Q L LT E + + M K + ++R E +
Sbjct: 71 SNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKI 127
Query: 164 MGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLG 223
+ + +N R LSG Q++RV+++ ++ P LL LDEP S LD+ + + ++
Sbjct: 128 LDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEV- 186
Query: 224 QRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264
+ +G T++ H P +++F + + +L G+ V G
Sbjct: 187 -QSRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKP 225
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 104 bits (261), Expect = 2e-26
Identities = 58/236 (24%), Positives = 94/236 (39%), Gaps = 19/236 (8%)
Query: 48 VSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILING 107
V S IL D++ A+P ++A GPSG GK+T+ L G+I I+G
Sbjct: 7 VDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFY---QPTAGEITIDG 63
Query: 108 H-----KKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIR 162
+V+QD ++ + Y + + + A +
Sbjct: 64 QPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVE 123
Query: 163 EM--GLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIA 220
M L + R ++SGGQ++R++I+ L PK+L LDE T+ LDS + V +
Sbjct: 124 NMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALD 183
Query: 221 KLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANEFFAFNGF 276
L + GRT + H+ S + + GQ G NE A +
Sbjct: 184 SLMK----GRTTLVIAHRLS--TIVDADKIYFIEKGQITGSGK---HNELVATHPL 230
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 103 bits (258), Expect = 4e-26
Identities = 51/209 (24%), Positives = 103/209 (49%), Gaps = 15/209 (7%)
Query: 59 LEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYG--- 115
L++L+ + G I+GP+G+GKT L+ +AG D+ + IL++G
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGR---ILLDGKDVTDLSPEKH 72
Query: 116 TSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIR 175
A+V Q+ +L + VK+ + + + M K +R T R++ ++ ++
Sbjct: 73 DIAFVYQNYSLFPHMNVKKNLEFGMR------MKKIKDPKRVLDTARDLKIEHLLDRNPL 126
Query: 176 RLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIAS 235
LSGG+++RV+++ ++T PK+L LDEP S LD ++ L +++ + T++
Sbjct: 127 TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKL--TVLHI 184
Query: 236 IHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264
H +E + + ++ G+ + G
Sbjct: 185 THDQ-TEARIMADRIAVVMDGKLIQVGKP 212
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 90.5 bits (224), Expect = 2e-21
Identities = 47/213 (22%), Positives = 91/213 (42%), Gaps = 18/213 (8%)
Query: 67 KPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTS---AYVTQD 123
++GP+G+GK+ L+ +A G G++ +NG +V QD
Sbjct: 22 MGRDYCVLLGPTGAGKSVFLELIA---GIVKPDRGEVRLNGADITPLPPERRGIGFVPQD 78
Query: 124 DTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKR 183
L L+V + Y + + ++ R ++G+ ++ + RLSGG+++
Sbjct: 79 YALFPHLSVYRNIAYG-----LRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQ 133
Query: 184 RVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEV 243
RV+++ ++ +P+LL LDEP S +D +M + + + I+ H E
Sbjct: 134 RVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFV--QREFDVPILHVTHDL-IEA 190
Query: 244 FQLFHNLCLLSAGQTVYFGPA----TAANEFFA 272
L + ++ G+ V G +A N A
Sbjct: 191 AMLADEVAVMLNGRIVEKGKLKELFSAKNGEVA 223
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 60.0 bits (144), Expect = 3e-11
Identities = 24/194 (12%), Positives = 47/194 (24%), Gaps = 32/194 (16%)
Query: 72 LAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLT 131
+ I G G GKTTL+ + RLG + + + +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKR---AIGFWTEEVRDPETKKRTGFRIITTEGKKKIF 59
Query: 132 VKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEI 191
T +++ +N + +
Sbjct: 60 -----------------------SSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAK 96
Query: 192 LTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLC 251
R K++ +DE + R ++A+I +V L +
Sbjct: 97 KDRRKVIIIDEIGKMEL----FSKKFRDLVRQIMHDPNVNVVATIPIR--DVHPLVKEIR 150
Query: 252 LLSAGQTVYFGPAT 265
L + P
Sbjct: 151 RLPGAVLIELTPEN 164
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Score = 41.9 bits (97), Expect = 3e-05
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 67 KPGHLLAIMGPSGSGKTTLLDALAGRLG 94
H+ +MG SGSGK+ + +A +L
Sbjct: 4 HDHHIYVLMGVSGSGKSAVASEVAHQLH 31
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Score = 41.9 bits (97), Expect = 4e-05
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 69 GHLLAIMGPSGSGKTTLLDALAGRLG 94
G++L + G GSGK+T+ +ALA G
Sbjct: 4 GNILLLSGHPGSGKSTIAEALANLPG 29
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Score = 40.8 bits (94), Expect = 1e-04
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 69 GHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTG 101
++ + G S +GK+ ++ L L G
Sbjct: 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFG 35
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Score = 39.8 bits (92), Expect = 2e-04
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 72 LAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH 108
++G SGKTTL++ + + G + +GH
Sbjct: 4 WQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 40
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 39.6 bits (91), Expect = 2e-04
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 69 GHLLAIMGPSGSGKTTLLDALAGRL 93
G ++ + GPS GK+T++ L R+
Sbjct: 2 GRVVVLSGPSAVGKSTVVRCLRERI 26
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.6 bits (91), Expect = 3e-04
Identities = 17/167 (10%), Positives = 45/167 (26%), Gaps = 3/167 (1%)
Query: 74 IMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYG--TSAYVTQDDTLITTLT 131
+ GP G GKTTL+ + L S ++ ++ ++ +
Sbjct: 6 LTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVG 65
Query: 132 VKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEI 191
++ + + ++ A +R R+ + K + + I
Sbjct: 66 LEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFI 125
Query: 192 LTRPKLLFLDEPTSGLDSAASYYVMSR-IAKLGQRDGIGRTIIASIH 237
+ L + ++ R + + +
Sbjct: 126 QAVRQTLSTPGTIILGTIPVPKGKPLALVEEIRNRKDVKVFNVTKEN 172
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} Length = 327 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Score = 39.8 bits (92), Expect = 4e-04
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 45 VTIVSNGKKG----SSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRL 93
+T+V + S+ +L+ + Y L + G G+GK+T L+A L
Sbjct: 26 MTLVESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLL 78
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Score = 38.9 bits (89), Expect = 5e-04
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 71 LLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL 112
L I GP+G GK+T LA +L + G I+ +
Sbjct: 4 LYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGY 45
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Score = 38.7 bits (89), Expect = 6e-04
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 69 GHLLAIMGPSGSGKTTLLDALAGR 92
G L + PSG+GK++L+ AL
Sbjct: 2 GTLYIVSAPSGAGKSSLIQALLKT 25
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Score = 37.7 bits (86), Expect = 9e-04
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 72 LAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGH 108
LA SG+GKTTLL L L + + G I H
Sbjct: 5 LAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 41
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} Length = 223 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Score = 38.1 bits (87), Expect = 0.001
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 73 AIMGPSGSGKTTLLDALAGRLGSDTRQTGKIL 104
AI GP+ SGK+T+ +A G TG +
Sbjct: 7 AIDGPASSGKSTVAKIIAKDFGFTYLDTGAMY 38
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} Length = 323 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Score = 38.3 bits (88), Expect = 0.001
Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Query: 45 VTIVSNG----KKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRL 93
+T+ + + +++ + + I G G GK+T +DAL L
Sbjct: 23 ITLAESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL 75
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} Length = 321 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Score = 38.1 bits (88), Expect = 0.001
Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 3/83 (3%)
Query: 16 EMESSNKTANSLINVNEDDGVFLTW--KDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLA 73
E S K + ++V + + F+ + V + S + E G ++
Sbjct: 69 YKEKSVKAEDGSVSVVQVENGFMKQGHRGWLVDLTGELVGCSPVVAEFGGHRYASGMVIV 128
Query: 74 IMGPSGSGKTTLLDALAGRLGSD 96
G SGKT L+ AL LG
Sbjct: 129 T-GKGNSGKTPLVHALGEALGGK 150
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Score = 37.7 bits (86), Expect = 0.001
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 73 AIMGPSGSGKTTLLDALAGRLGSDTRQTGKIL 104
I GPSG+GK TL A+A L +G I
Sbjct: 7 TIDGPSGAGKGTLCKAMAEALQWHLLDSGAIY 38
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Score = 37.3 bits (85), Expect = 0.002
Identities = 18/119 (15%), Positives = 33/119 (27%), Gaps = 1/119 (0%)
Query: 67 KP-GHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDT 125
+P G + I G G+GKT++ + +A L L+ + Y T +
Sbjct: 2 QPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTELDTHIIEE 61
Query: 126 LITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRR 184
+ S + + L + RL+ Q
Sbjct: 62 KDEDRLLDFMEPIMVSRGNHVVDYHSSELFPERWFHMVVVLHTSTEVLFERLTKRQYSE 120
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Score = 37.4 bits (85), Expect = 0.002
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 66 AKPGHLLAIMGPSGSGKTTLLDALAGRLG 94
A G + + G SGK + AL L
Sbjct: 3 ATQGFTIFLTGYMNSGKDAIARALQVTLN 31
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 190 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 37.2 bits (85), Expect = 0.002
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 71 LLAIMGPSGSGKTTLLDALAGRLGSD 96
+ + GPSG+GK+TLL L S
Sbjct: 2 PVVLSGPSGAGKSTLLKKLFQEHSSI 27
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Score = 37.4 bits (85), Expect = 0.002
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 73 AIMGPSGSGKTTLLDALAGRLG 94
AI+G SGK+ L++ LA
Sbjct: 11 AILGGESSGKSVLVNKLAAVFN 32
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.2 bits (85), Expect = 0.002
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 71 LLAIMGPSGSGKTTLLDALAGRL 93
+ I GPSG+GK+TLL L
Sbjct: 3 PIVISGPSGTGKSTLLKKLFAEY 25
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 37.0 bits (84), Expect = 0.002
Identities = 14/53 (26%), Positives = 22/53 (41%)
Query: 73 AIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDT 125
AI+G GK+TLL+ L G+ S T + + + G + D
Sbjct: 9 AIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTP 61
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.8 bits (84), Expect = 0.002
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 71 LLAIMGPSGSGKTTLLDALAGRL 93
L ++G G G+ + + L +
Sbjct: 5 TLVLLGAHGVGRRHIKNTLITKH 27
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Score = 36.9 bits (84), Expect = 0.003
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 41 KDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALA 90
+ +V ++ +G G + D T A+ G ++ + SG GK+T + A
Sbjct: 11 SEESVGLLFSGCTG----INDKTLGARGGEVIMVTSGSGMGKSTFVRQQA 56
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.6 bits (84), Expect = 0.004
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Query: 59 LEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLG----SDTRQTGKILINGHKKALAY 114
L+ L+ +P ++AI+G +GK+ L++ LAG+ T Q+ I
Sbjct: 22 LKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPK 81
Query: 115 GTSAYVTQDDT 125
+ DT
Sbjct: 82 KPGHILVLLDT 92
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 341 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 36.6 bits (84), Expect = 0.004
Identities = 17/107 (15%), Positives = 34/107 (31%), Gaps = 8/107 (7%)
Query: 73 AIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTV 132
+++ GK+TL D+L ++ G I +A + + Q+ + T
Sbjct: 21 SVIAHVDHGKSTLTDSL-------VQRAGIISAAKAGEA-RFTDTRKDEQERGITIKSTA 72
Query: 133 KEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSG 179
+ + + K+D I G D + L
Sbjct: 73 ISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRV 119
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 449 | |||
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.86 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.67 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.29 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.28 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.98 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.89 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 98.3 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 98.27 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 98.02 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 97.85 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 97.79 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 97.54 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 97.42 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.4 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.38 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.38 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.34 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.24 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 97.22 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.2 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.14 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.09 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 97.08 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.03 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 97.0 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.99 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.98 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.97 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.93 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.91 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.85 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.84 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.81 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.77 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.75 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.71 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.7 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 96.7 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 96.67 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.66 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.61 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.6 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.59 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 96.58 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 96.57 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 96.55 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.53 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.52 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 96.51 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 96.47 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 96.47 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 96.46 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 96.46 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.46 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 96.44 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 96.43 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.43 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 96.38 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.36 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 96.36 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 96.31 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 96.27 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 96.24 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.23 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 96.22 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 96.2 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 96.19 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 96.16 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 96.15 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 96.15 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 96.09 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.08 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 96.04 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 96.03 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 96.02 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 95.99 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 95.97 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 95.96 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.95 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.94 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.9 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 95.86 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 95.85 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 95.85 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 95.84 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 95.84 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.78 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 95.77 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 95.74 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 95.72 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 95.7 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 95.7 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.69 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 95.51 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 95.51 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 95.48 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 95.47 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.47 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 95.42 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.41 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 95.39 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 95.38 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 95.38 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 95.37 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 95.36 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 95.35 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 95.32 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 95.3 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 95.29 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 95.28 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 95.25 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 95.24 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 95.2 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 95.17 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 95.16 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 95.14 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 95.13 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 95.05 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.05 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 95.04 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 95.03 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 95.02 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 94.99 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 94.91 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 94.87 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 94.85 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 94.84 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 94.82 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 94.82 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 94.8 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 94.76 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 94.75 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 94.73 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 94.73 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 94.72 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 94.72 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 94.71 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 94.65 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 94.63 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 94.63 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 94.61 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 94.59 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 94.58 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 94.57 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 94.55 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 94.46 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 94.41 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.4 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 94.38 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 94.37 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 94.35 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 94.33 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 94.33 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 94.27 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.24 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 94.24 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 94.23 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 94.2 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 94.18 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 94.14 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 94.13 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 94.13 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 94.09 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.06 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 94.04 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 94.03 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 94.03 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 94.0 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 93.97 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 93.96 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 93.91 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 93.84 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 93.84 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 93.82 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 93.75 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 93.64 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 93.6 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 93.58 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 93.58 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 93.49 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 93.43 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 93.38 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 93.17 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 93.17 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 93.12 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 93.11 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 93.06 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 92.97 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 92.9 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 92.81 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 92.69 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 92.64 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 92.35 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 92.34 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 92.27 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 92.24 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 92.08 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 91.96 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 91.88 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 91.7 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 91.42 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 91.34 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 91.34 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 90.96 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 90.84 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 90.67 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 89.9 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 89.79 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 89.54 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 89.35 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 89.11 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 88.29 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 88.27 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 87.95 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 87.87 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 87.52 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 86.4 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 85.85 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 85.49 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 85.27 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 84.96 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 84.06 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 83.98 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 83.76 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 83.28 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 83.19 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 82.94 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 82.71 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 82.66 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 82.34 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 82.32 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 81.79 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 81.44 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=4.5e-59 Score=442.24 Aligned_cols=217 Identities=26% Similarity=0.423 Sum_probs=194.0
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---c
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---A 113 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---~ 113 (449)
.|+++||+++| +++.+|+||||+|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|+++.. .
T Consensus 6 ~I~v~nlsk~y------g~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~ 76 (239)
T d1v43a3 6 EVKLENLTKRF------GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPK 76 (239)
T ss_dssp CEEEEEEEEEE------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGG
T ss_pred eEEEEEEEEEE------CCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CCEEEEcceecccCCcc
Confidence 38999999983 6788999999999999999999999999999999999999885 9999999998642 2
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh
Q 044030 114 YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT 193 (449)
Q Consensus 114 ~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~ 193 (449)
.+.+|||||++.+||.+||+||+.|++..+ +.++++.+++++++++.+||++.+++++.+|||||||||+|||||+.
T Consensus 77 ~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~ 153 (239)
T d1v43a3 77 DRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVV 153 (239)
T ss_dssp GGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTT
T ss_pred cceEEEEeechhhcccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhcc
Confidence 357999999999999999999999887654 46788888999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
+|++|||||||+|||+.++..+++.|++++++.|. |||++|||+ .++.++|||+++|++|++++.|+++++.
T Consensus 154 ~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~--tii~vTHd~-~~a~~~~dri~vm~~G~iv~~G~~~el~ 225 (239)
T d1v43a3 154 EPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKV--TTIYVTHDQ-VEAMTMGDRIAVMNRGQLLQIGSPTEVY 225 (239)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTC--EEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred CCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCC--eEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999877766 999999996 6899999999999999999999998874
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3e-59 Score=441.91 Aligned_cols=216 Identities=27% Similarity=0.411 Sum_probs=160.9
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---cc
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---AY 114 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---~~ 114 (449)
|+++||+++| +++.+|+||||+|++||++||+||||||||||+|+|+|+++|+ +|+|+++|+++.. ..
T Consensus 1 Iev~nv~k~y------g~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~ 71 (232)
T d2awna2 1 VQLQNVTKAW------GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAE 71 (232)
T ss_dssp EEEEEEEEEE------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEESSSCCTTSCGGG
T ss_pred CEEEEEEEEE------CCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CCEEEECCEECCCCchhh
Confidence 6899999983 5678999999999999999999999999999999999999874 9999999987632 24
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhC
Q 044030 115 GTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTR 194 (449)
Q Consensus 115 ~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~ 194 (449)
+.+|||||++.+++.+||+||+.|+...+ +.++++.++++.++++.++|.+..++++.+|||||||||+|||||+++
T Consensus 72 r~ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~ 148 (232)
T d2awna2 72 RGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAE 148 (232)
T ss_dssp TCEEEECSSCCC------------------------CHHHHHHHHHHHHC---------------------CHHHHHHTC
T ss_pred ceeeeeccccccccchhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 67999999999999999999999987654 355667788999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 195 PKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 195 P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
|++|||||||+|||+.++..+++.|+++.++.|. |||++|||+ .++..+|||+++|++|++++.|+++++.
T Consensus 149 P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~--tii~vTHd~-~~a~~~~dri~vm~~G~iv~~G~~~el~ 219 (232)
T d2awna2 149 PSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGR--TMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLELY 219 (232)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCC--EEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEEEeCHHHHH
Confidence 9999999999999999999999999999877766 999999996 6899999999999999999999998874
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=2.3e-58 Score=437.89 Aligned_cols=217 Identities=26% Similarity=0.425 Sum_probs=200.6
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.|+++||+++| +++.+|+||||+|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|+++..
T Consensus 3 ~i~v~nl~k~y------g~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~---sG~I~~~g~~i~~~~~~ 73 (240)
T d1g2912 3 GVRLVDVWKVF------GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKG 73 (240)
T ss_dssp EEEEEEEEEEE------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGT
T ss_pred cEEEEeEEEEE------CCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CCEEEECCEEecccchh
Confidence 48999999983 5678999999999999999999999999999999999999874 9999999987421
Q ss_pred -----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHH
Q 044030 113 -----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSI 187 (449)
Q Consensus 113 -----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~i 187 (449)
.++.+|||||++.++|.+||+||+.|+...+ +.+.++.++++.++++.++|.+..++++++|||||||||+|
T Consensus 74 ~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~---~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~I 150 (240)
T d1g2912 74 IFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVAL 150 (240)
T ss_dssp EECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHH
T ss_pred hhcccccccceecccchhhcchhhhhHhhhhhHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHH
Confidence 1357999999999999999999999998875 46778888999999999999999999999999999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 188 SIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 188 a~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
||||+++|++|||||||+|||+.++..+++.|+++.++.|. |||++|||+ +++..+||||++|++|++++.|+++++
T Consensus 151 AraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~--tvi~vTHd~-~~~~~~~drv~vm~~G~iv~~G~~~el 227 (240)
T d1g2912 151 GRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGV--TTIYVTHDQ-VEAMTMGDRIAVMNRGVLQQVGSPDEV 227 (240)
T ss_dssp HHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTC--EEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCC--EEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999999999999999999999999877766 999999996 689999999999999999999999887
Q ss_pred H
Q 044030 268 N 268 (449)
Q Consensus 268 ~ 268 (449)
.
T Consensus 228 ~ 228 (240)
T d1g2912 228 Y 228 (240)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1.4e-58 Score=439.12 Aligned_cols=219 Identities=26% Similarity=0.406 Sum_probs=200.0
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.|+++||+++| . .+...+|+||||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|++...
T Consensus 3 ~i~v~nlsk~y-~---~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~---~G~I~~~g~~i~~~~~~ 75 (242)
T d1oxxk2 3 RIIVKNVSKVF-K---KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKL 75 (242)
T ss_dssp CEEEEEEEEEE-G---GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEE
T ss_pred EEEEEeEEEEE-C---CCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCC---CceEEECCEEeecCchh
Confidence 48999999994 2 24578999999999999999999999999999999999999874 9999999987421
Q ss_pred ----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHH
Q 044030 113 ----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSIS 188 (449)
Q Consensus 113 ----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia 188 (449)
.++.+|||||++.+||.+||+||+.|++..+ +.++++.++++.++++.+||++.+++++.+|||||||||+||
T Consensus 76 ~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiA 152 (242)
T d1oxxk2 76 IVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALA 152 (242)
T ss_dssp SSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred hcchhhccceEEeccccccccccHHHHhhhhhHhh---cCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHH
Confidence 1357999999999999999999999987654 467788889999999999999999999999999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 189 IEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 189 ~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
|||+++|++|||||||+|||+.++..+++.|+++.++.|. |||++|||+ .++.++|||+++|++|++++.|+++++.
T Consensus 153 RaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~--tvi~vTHd~-~~~~~~~dri~vm~~G~iv~~g~~~el~ 229 (242)
T d1oxxk2 153 RALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGV--TLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKPEDLY 229 (242)
T ss_dssp HHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCC--EEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred hHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCC--EEEEEECCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999999999877766 999999996 6899999999999999999999998874
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.2e-58 Score=436.15 Aligned_cols=220 Identities=25% Similarity=0.395 Sum_probs=198.7
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
+|+++||+++| .. +.+...+|+||||+|++||+++|+||||||||||+++|+|+.+|+ +|+|.++|+++..
T Consensus 1 mi~v~nlsk~y-~~-~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~---sG~I~~~g~~i~~~~~~ 75 (240)
T d3dhwc1 1 MIKLSNITKVF-HQ-GTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSES 75 (240)
T ss_dssp CEEEEEEEEEE-EC-SSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCS---EEEEEETTEEECTTCHH
T ss_pred CEEEEeEEEEe-CC-CCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCcccc---CCceEEcCeEeeeCChh
Confidence 47999999994 32 122346899999999999999999999999999999999999874 9999999998531
Q ss_pred ----ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHH
Q 044030 113 ----AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSIS 188 (449)
Q Consensus 113 ----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia 188 (449)
.++.+|||||++.+++.+||+||+.+++..+ +.++++.++++.++++.+||.+.+++++++|||||||||+||
T Consensus 76 ~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~---~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiA 152 (240)
T d3dhwc1 76 ELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIA 152 (240)
T ss_dssp HHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTT---TCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHH
T ss_pred hhhhhhccccccccccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHh
Confidence 1246999999999999999999999998765 456677888999999999999999999999999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 189 IEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 189 ~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
|||+.+|++|||||||+|||+.++..+++.|+++.++.|. |||++|||+ .++..+|||+++|++|++++.|+++++
T Consensus 153 raL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~--tvi~vTHdl-~~~~~~~dri~vl~~G~iv~~G~~~ei 228 (240)
T d3dhwc1 153 RALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGL--TILLITHEM-DVVKRICDCVAVISNGELIEQDTVSEV 228 (240)
T ss_dssp HHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCC--EEEEEBSCH-HHHHHHCSEEEEEETTEEEEEEETTTT
T ss_pred hhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCC--EEEEEcCCH-HHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999877766 999999996 689999999999999999999999876
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=9.7e-58 Score=430.42 Aligned_cols=213 Identities=24% Similarity=0.436 Sum_probs=193.4
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---c
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---A 113 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---~ 113 (449)
+|+++|||++| ++ .+|+||||+|++||+++|+||||||||||+|+|+|+.+|+ +|+|.++|+++.. .
T Consensus 1 mi~v~nlsk~y------~~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~---sG~I~~~G~~i~~~~~~ 70 (229)
T d3d31a2 1 MIEIESLSRKW------KN-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPE 70 (229)
T ss_dssp CEEEEEEEEEC------SS-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHH
T ss_pred CEEEEEEEEEe------CC-EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCC---CCEEEEccEeccccchh
Confidence 47899999983 33 4899999999999999999999999999999999999874 9999999998743 2
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh
Q 044030 114 YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT 193 (449)
Q Consensus 114 ~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~ 193 (449)
++.+|||||++.+||.+||+||+.|+...+. .+. ++++.++++.+++.+.+|+++.+|||||||||+|||||++
T Consensus 71 ~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~---~~~---~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~ 144 (229)
T d3d31a2 71 KHDIAFVYQNYSLFPHMNVKKNLEFGMRMKK---IKD---PKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVT 144 (229)
T ss_dssp HHTCEEECTTCCCCTTSCHHHHHHHHHHHHC---CCC---HHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTS
T ss_pred HhcceeeccccccCccccHHHHHHHHHhhcc---ccH---HHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhc
Confidence 3579999999999999999999999987652 222 3568899999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
+|++|||||||+|||+.++..+++.|++++++.|. |||++|||+ .++.++||||++|++|++++.|+++++.
T Consensus 145 ~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~--tii~vtHd~-~~~~~~~drv~vm~~G~iv~~g~~~el~ 216 (229)
T d3d31a2 145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKL--TVLHITHDQ-TEARIMADRIAVVMDGKLIQVGKPEEIF 216 (229)
T ss_dssp CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTC--EEEEEESCH-HHHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred cCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCc--EEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999877766 999999996 6899999999999999999999998874
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=3.6e-57 Score=427.40 Aligned_cols=219 Identities=26% Similarity=0.388 Sum_probs=193.4
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc---
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA--- 113 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~--- 113 (449)
+|+++||+++| ..+ .....+|+||||+|++||++||+|||||||||||++|+|+.+|+ +|+|+++|+++...
T Consensus 1 mI~i~nlsk~y-~~~-~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~---sG~I~~~g~~i~~~~~~ 75 (230)
T d1l2ta_ 1 MIKLKNVTKTY-KMG-EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDD 75 (230)
T ss_dssp CEEEEEEEEEE-EET-TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHH
T ss_pred CEEEEeEEEEe-CCC-CeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCC---cceeEECCEEcCcCChh
Confidence 47999999994 321 12346899999999999999999999999999999999999874 99999999986321
Q ss_pred ------cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch-hhCccCCCCChHHHHHHH
Q 044030 114 ------YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD-AMNTRIRRLSGGQKRRVS 186 (449)
Q Consensus 114 ------~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~LSgGerqRv~ 186 (449)
++.+|||||++.++|.+||+||+.++...+.....+.++..+++.++++.++|.+ .++++|.+|||||||||+
T Consensus 76 ~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRva 155 (230)
T d1l2ta_ 76 ELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVA 155 (230)
T ss_dssp HHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHH
T ss_pred hcchhhcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHH
Confidence 2359999999999999999999999987754445667778888999999999976 689999999999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecCh
Q 044030 187 ISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264 (449)
Q Consensus 187 ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~ 264 (449)
|||||+++|++|||||||+|||+.++..+++.|+++.++.|. |||++|||+ +. .++|||+++|++|++++.|++
T Consensus 156 IAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~--tii~vTHd~-~~-a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 156 IARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGK--TVVVVTHDI-NV-ARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCC--EEEEECSCH-HH-HTTSSEEEEEETTEEEEEEEC
T ss_pred HHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCC--EEEEECCCH-HH-HHhCCEEEEEECCEEEEeccC
Confidence 999999999999999999999999999999999999877766 999999996 44 489999999999999999864
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=4.4e-55 Score=416.40 Aligned_cols=217 Identities=26% Similarity=0.394 Sum_probs=199.4
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA---- 113 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~---- 113 (449)
|.++||+++| ++++||+||||+|++||++||+||||||||||+|+|+|+++|+ +|+|.++|++....
T Consensus 3 I~v~nl~k~y------g~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~---~G~i~i~G~~i~~~~~~~ 73 (238)
T d1vpla_ 3 VVVKDLRKRI------GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEV 73 (238)
T ss_dssp EEEEEEEEEE------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHH
T ss_pred EEEEeEEEEE------CCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECcEecccChHHH
Confidence 7899999983 6788999999999999999999999999999999999999884 99999999986321
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh
Q 044030 114 YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT 193 (449)
Q Consensus 114 ~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~ 193 (449)
++.++||||++.+++.+||.||+.|...++ ..+..+.++.++.+++.++|.+..++++++|||||||||+||+||++
T Consensus 74 ~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~ 150 (238)
T d1vpla_ 74 RKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMV 150 (238)
T ss_dssp HTTEEEECTTCCCCTTSBHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTT
T ss_pred HhhEeEeeeccccCCCccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhc
Confidence 367999999999999999999999988775 34567777889999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHHHH
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANEF 270 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~~~ 270 (449)
+|++|||||||+|||+.++..++++|++++++ |. |||++||++ +++..+||||++|++|++++.|+++++.+.
T Consensus 151 ~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~-g~--tii~~tH~l-~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 223 (238)
T d1vpla_ 151 NPRLAILDEPTSGLDVLNAREVRKILKQASQE-GL--TILVSSHNM-LEVEFLCDRIALIHNGTIVETGTVEELKER 223 (238)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TC--EEEEEECCH-HHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred CCCEEEecCCCCCCCHHHHHHHHHHHHHHHhc-CC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHhc
Confidence 99999999999999999999999999999855 55 999999996 689999999999999999999999988754
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=4.9e-55 Score=420.60 Aligned_cols=217 Identities=29% Similarity=0.385 Sum_probs=194.6
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.|+++||+++| +++++|+||||+|++||++||+||||||||||+++|+|+++|+ +|+|.++|+++..
T Consensus 2 ~Lev~nl~k~y------g~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~---~G~I~~~G~~i~~~~~~ 72 (258)
T d1b0ua_ 2 KLHVIDLHKRY------GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDK 72 (258)
T ss_dssp CEEEEEEEEEE------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECT
T ss_pred eEEEEEEEEEE------CCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCC---CCCEEECCEEeccCCcc
Confidence 38999999983 5678999999999999999999999999999999999999874 9999999987521
Q ss_pred --------------ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch-hhCccCCCC
Q 044030 113 --------------AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD-AMNTRIRRL 177 (449)
Q Consensus 113 --------------~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~~~~L 177 (449)
.++++|||||++.+++.+||.||+.++..... ..+..+.++++.++++.++|.+ ..++++.+|
T Consensus 73 ~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~L 150 (258)
T d1b0ua_ 73 DGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKHDARERALKYLAKVGIDERAQGKYPVHL 150 (258)
T ss_dssp TSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGS
T ss_pred chhcccccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhc--CCCHHHHHHHHHHHHHHcCCchhhhccCcccc
Confidence 12469999999999999999999998753321 3567778889999999999976 468889999
Q ss_pred ChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCe
Q 044030 178 SGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQ 257 (449)
Q Consensus 178 SgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~ 257 (449)
||||||||+|||||+.+|++|||||||+|||+.++..|++.|++++++ |. |||++|||+ .++..+||||++|++|+
T Consensus 151 SGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~-g~--til~vtHdl-~~~~~~adri~vm~~G~ 226 (258)
T d1b0ua_ 151 SGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GK--TMVVVTHEM-GFARHVSSHVIFLHQGK 226 (258)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TC--CEEEECSCH-HHHHHHCSEEEEEETTE
T ss_pred cHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhccc-CC--ceEEEeCCH-HHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999864 55 999999996 68999999999999999
Q ss_pred EEEecChhhHH
Q 044030 258 TVYFGPATAAN 268 (449)
Q Consensus 258 iv~~g~~~~~~ 268 (449)
+++.|+++++.
T Consensus 227 iv~~g~~~ev~ 237 (258)
T d1b0ua_ 227 IEEEGDPEQVF 237 (258)
T ss_dssp EEEEECHHHHH
T ss_pred EEEEcCHHHHH
Confidence 99999999874
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=4.7e-55 Score=416.93 Aligned_cols=217 Identities=28% Similarity=0.392 Sum_probs=192.9
Q ss_pred CeeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc-
Q 044030 35 GVFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA- 113 (449)
Q Consensus 35 ~~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~- 113 (449)
.+.|+++||+++| +++.+|+||||+|++||++||+||||||||||+|+|+|+++|+ +|+|.++|++....
T Consensus 4 d~~Lev~~l~k~y------g~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~---~G~I~~~G~~i~~~~ 74 (240)
T d1ji0a_ 4 DIVLEVQSLHVYY------GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKP 74 (240)
T ss_dssp SEEEEEEEEEEEE------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCC
T ss_pred ceEEEEeeEEEEE------CCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEeccccccccc
Confidence 4579999999983 6788999999999999999999999999999999999999874 99999999986421
Q ss_pred -----cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHc-CCchhhCccCCCCChHHHHHHHH
Q 044030 114 -----YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREM-GLQDAMNTRIRRLSGGQKRRVSI 187 (449)
Q Consensus 114 -----~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~~~~LSgGerqRv~i 187 (449)
+..++|+||+..+|+.+||+||+.++..... .....++.++++++.+ ++.+.+++++++|||||||||+|
T Consensus 75 ~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~i 150 (240)
T d1ji0a_ 75 AHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRK----DKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAI 150 (240)
T ss_dssp HHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCC----CSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHH
T ss_pred HHHHHHhcccccCcccccCCcccHHHHHHHHHHhcC----CHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHH
Confidence 2359999999999999999999988764432 2334455677777877 78899999999999999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhH
Q 044030 188 SIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAA 267 (449)
Q Consensus 188 a~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~ 267 (449)
||||+++|++|||||||+|||+.++..+++.|++++++ |. |||++||++ .++.++|||+++|++|++++.|+++++
T Consensus 151 AraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~-g~--til~~tH~l-~~~~~~~drv~vl~~G~iv~~g~~~el 226 (240)
T d1ji0a_ 151 GRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQE-GT--TILLVEQNA-LGALKVAHYGYVLETGQIVLEGKASEL 226 (240)
T ss_dssp HHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHT-TC--CEEEEESCH-HHHHHHCSEEEEEETTEEEEEEEHHHH
T ss_pred HHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhC-CC--EEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999999999999999999999999865 55 999999996 689999999999999999999999887
Q ss_pred H
Q 044030 268 N 268 (449)
Q Consensus 268 ~ 268 (449)
.
T Consensus 227 ~ 227 (240)
T d1ji0a_ 227 L 227 (240)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.1e-54 Score=416.01 Aligned_cols=219 Identities=22% Similarity=0.332 Sum_probs=193.3
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc---
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA--- 113 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~--- 113 (449)
.|+++||+++| ++.++|+||||++++||++||+||||||||||+|+|+|+++|+ +|+|.++|+++...
T Consensus 4 iL~v~nlsk~y------g~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~---~G~I~~~g~~i~~~~~~ 74 (254)
T d1g6ha_ 4 ILRTENIVKYF------GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPA 74 (254)
T ss_dssp EEEEEEEEEEE------TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHH
T ss_pred eEEEEEEEEEE------CCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCC---CcEEEECCEeccchhHH
Confidence 58999999983 6778999999999999999999999999999999999999875 99999999986421
Q ss_pred ---cCcEEEEcCCCCCCCCCCHHHHHHHHHhccC----------CCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChH
Q 044030 114 ---YGTSAYVTQDDTLITTLTVKEAVYYSAQLQL----------PDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGG 180 (449)
Q Consensus 114 ---~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~----------~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgG 180 (449)
...++|+||++.+++.+||.||+.++...+. ......++..+++.++++.+++.+..++++++||||
T Consensus 75 ~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG 154 (254)
T d1g6ha_ 75 ELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGG 154 (254)
T ss_dssp HHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHH
T ss_pred HHHHhcCCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhCCcH
Confidence 2359999999999999999999988643221 111233455677889999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 181 erqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
|||||+|||||+.+|++|||||||+|||+.++..+++.|+++++ .|. |||++|||+. ++.++||||++|++|++++
T Consensus 155 ~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~-~g~--til~vsHdl~-~~~~~~Drv~vm~~G~iv~ 230 (254)
T d1g6ha_ 155 QMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA-KGI--TFLIIEHRLD-IVLNYIDHLYVMFNGQIIA 230 (254)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTC--EEEEECSCCS-TTGGGCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHH-CCC--EEEEEeCcHH-HHHHhCCEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999975 455 9999999974 7999999999999999999
Q ss_pred ecChhhHH
Q 044030 261 FGPATAAN 268 (449)
Q Consensus 261 ~g~~~~~~ 268 (449)
.|++++..
T Consensus 231 ~g~~~e~~ 238 (254)
T d1g6ha_ 231 EGRGEEEI 238 (254)
T ss_dssp EEESHHHH
T ss_pred EecHHHHh
Confidence 99988754
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=2.9e-54 Score=408.59 Aligned_cols=211 Identities=23% Similarity=0.412 Sum_probs=187.7
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc---c
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---A 113 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---~ 113 (449)
.|++ ++.+. + +...+ ||||++. +|+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .
T Consensus 2 ~l~v-~~~k~-~-----g~~~~--~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~---~G~I~~~G~~i~~~~~~ 68 (240)
T d2onka1 2 FLKV-RAEKR-L-----GNFRL--NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPE 68 (240)
T ss_dssp CEEE-EEEEE-E-----TTEEE--EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTT
T ss_pred EEEE-EEEEE-E-----CCEEE--EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCcCCHH
Confidence 3555 45555 2 44444 8999995 6899999999999999999999999874 9999999998642 2
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHh
Q 044030 114 YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILT 193 (449)
Q Consensus 114 ~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~ 193 (449)
++.+|||||++.++|.+||+||+.|+++ ..++.+.++++.++++.+||.+.+++++.+|||||||||+|||||++
T Consensus 69 ~r~ig~v~Q~~~l~~~ltV~enl~~~l~-----~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~ 143 (240)
T d2onka1 69 RRGIGFVPQDYALFPHLSVYRNIAYGLR-----NVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVI 143 (240)
T ss_dssp TSCCBCCCSSCCCCTTSCHHHHHHTTCT-----TSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTT
T ss_pred HcCceeeccchhhcccchhhHhhhhhhc-----ccCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 4679999999999999999999998743 34567778899999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHH
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAAN 268 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~ 268 (449)
+|++|||||||+|||+.++..+++.|++++++.|. |||++|||+ .++..+||++++|++|++++.|+++++.
T Consensus 144 ~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~--tvi~vtHd~-~~~~~~adri~vm~~G~ii~~G~~~el~ 215 (240)
T d2onka1 144 QPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDV--PILHVTHDL-IEAAMLADEVAVMLNGRIVEKGKLKELF 215 (240)
T ss_dssp CCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTC--CEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred cCCceEecCccccCCHHHHHHHHHHHHHHHHhcCC--eEEEEeCCH-HHHHHhCCEEEEEECCEEEEEecHHHHh
Confidence 99999999999999999999999999999877766 999999996 6899999999999999999999998874
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.6e-51 Score=394.92 Aligned_cols=218 Identities=22% Similarity=0.358 Sum_probs=180.2
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.|+++||+|+| . + ..++.+|+||||+|++||++||+||||||||||+++|+|+++|. +|+|++||+++..
T Consensus 11 ~I~~~nvsf~Y-~-~-~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~---~G~I~i~g~~i~~~~~~ 84 (251)
T d1jj7a_ 11 LVQFQDVSFAY-P-N-RPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPLPQYEHR 84 (251)
T ss_dssp CEEEEEEEECC-T-T-STTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHH
T ss_pred eEEEEEEEEEC-C-C-CCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCC---cCEEEECCEecchhhhH
Confidence 59999999983 2 1 13457999999999999999999999999999999999999874 9999999998642
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHH-----HHHHHHHHHHc--CCchhhCccCCCCChHHHHH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDK-----KERAEVTIREM--GLQDAMNTRIRRLSGGQKRR 184 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~-----~~~v~~~l~~l--gL~~~~~~~~~~LSgGerqR 184 (449)
.++.++||+|++.+|+. ||+||+.++.... ...... .....+.++.+ |++...++.+.+||||||||
T Consensus 85 ~~r~~i~~v~Q~~~lf~~-tv~eni~~g~~~~----~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQR 159 (251)
T d1jj7a_ 85 YLHRQVAAVGQEPQVFGR-SLQENIAYGLTQK----PTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQA 159 (251)
T ss_dssp HHHHHEEEECSSCCCCSS-BHHHHHHCSCSSC----CCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHH
T ss_pred HHHHHhhhccccccccCc-chhhhhhhhhccc----chHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceE
Confidence 13579999999999865 9999998864321 111111 11223445544 45556677778999999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecCh
Q 044030 185 VSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264 (449)
Q Consensus 185 v~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~ 264 (449)
|+|||||+++|+|||||||||+||+.++..+++.|+++.++.|+ |||++||++ . ..+.||+|++|++|+++++|++
T Consensus 160 vaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~--Tvi~itH~l-~-~~~~aDrI~vl~~G~iv~~Gt~ 235 (251)
T d1jj7a_ 160 VALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSR--SVLLITQHL-S-LVEQADHILFLEGGAIREGGTH 235 (251)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGC--EEEEECSCH-H-HHHTCSEEEEEETTEEEEEECH
T ss_pred EEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCC--EEEEEeCCH-H-HHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999999999866666 999999996 3 4577999999999999999999
Q ss_pred hhHHH
Q 044030 265 TAANE 269 (449)
Q Consensus 265 ~~~~~ 269 (449)
+++.+
T Consensus 236 ~eLl~ 240 (251)
T d1jj7a_ 236 QQLME 240 (251)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98754
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.2e-51 Score=393.03 Aligned_cols=212 Identities=27% Similarity=0.431 Sum_probs=172.2
Q ss_pred EEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc-----
Q 044030 38 LTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL----- 112 (449)
Q Consensus 38 l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~----- 112 (449)
|+++||+|+| . .+.+.+|+||||+|++||++||+||||||||||+++|+|+++| .+|+|.+||.++..
T Consensus 2 I~~~nvsf~Y-~---~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p---~~G~I~i~g~~i~~~~~~~ 74 (241)
T d2pmka1 2 ITFRNIRFRY-K---PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP---ENGQVLIDGHDLALADPNW 74 (241)
T ss_dssp EEEEEEEEES-S---TTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEETTTSCHHH
T ss_pred eEEEEEEEEe-C---CCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCC---CCCEEEECCEEecccchhh
Confidence 7899999993 2 2456799999999999999999999999999999999999987 49999999998642
Q ss_pred ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHH-----HHHHHHc--CCchhhCccCCCCChHHHHHH
Q 044030 113 AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERA-----EVTIREM--GLQDAMNTRIRRLSGGQKRRV 185 (449)
Q Consensus 113 ~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v-----~~~l~~l--gL~~~~~~~~~~LSgGerqRv 185 (449)
.++.++||+|++.+|+. ||+||+.++.. ..+.++..... .+.++.+ +++...+..+..|||||||||
T Consensus 75 lr~~i~~v~Q~~~lf~~-Ti~eNi~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRv 148 (241)
T d2pmka1 75 LRRQVGVVLQDNVLLNR-SIIDNISLANP-----GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRI 148 (241)
T ss_dssp HHHHEEEECSSCCCTTS-BHHHHHCTTST-----TCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHH
T ss_pred hhceEEEEecccccCCc-cccccccccCc-----cccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHH
Confidence 13579999999998865 99999977532 12222221111 1112221 222334455689999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChh
Q 044030 186 SISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPAT 265 (449)
Q Consensus 186 ~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~ 265 (449)
+|||||+.+|+|||||||||+||+.++..|++.|+++.+ ++|+|++||++. . .+.||+|++|++|+++++|+++
T Consensus 149 alARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~----~~Tvi~itH~l~-~-~~~~D~i~vl~~G~Iv~~G~~~ 222 (241)
T d2pmka1 149 AIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK----GRTVIIIAHRLS-T-VKNADRIIVMEKGKIVEQGKHK 222 (241)
T ss_dssp HHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT----TSEEEEECSSGG-G-GTTSSEEEEEETTEEEEEECHH
T ss_pred hhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhC----CCEEEEEECCHH-H-HHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999974 449999999974 3 4789999999999999999998
Q ss_pred hHH
Q 044030 266 AAN 268 (449)
Q Consensus 266 ~~~ 268 (449)
++.
T Consensus 223 ell 225 (241)
T d2pmka1 223 ELL 225 (241)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=2.7e-51 Score=391.29 Aligned_cols=210 Identities=28% Similarity=0.416 Sum_probs=172.3
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
+|+++||+|+ |. +.+.+|+||||+|++||++||+||||||||||+++|+|+++|. +|+|.+||.++..
T Consensus 1 mle~knvsf~-Y~----~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~ 72 (242)
T d1mv5a_ 1 MLSARHVDFA-YD----DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLE 72 (242)
T ss_dssp CEEEEEEEEC-SS----SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCS
T ss_pred CEEEEEEEEE-CC----CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCC---CCEEEECCEEeccccHH
Confidence 4799999998 32 3467999999999999999999999999999999999999874 9999999998632
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCc-------hhhCc----cCCCCChH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQ-------DAMNT----RIRRLSGG 180 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~----~~~~LSgG 180 (449)
.++.++||+|++.+|+. ||+||+.++... ..+... +.+.++..++. +..++ .+.+||||
T Consensus 73 ~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~----~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGG 143 (242)
T d1mv5a_ 73 NWRSQIGFVSQDSAIMAG-TIRENLTYGLEG----DYTDED----LWQVLDLAFARSFVENMPDQLNTEVGERGVKISGG 143 (242)
T ss_dssp CCTTTCCEECCSSCCCCE-EHHHHTTSCTTS----CSCHHH----HHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHH
T ss_pred HHHhheEEEccccccCCc-chhhheeccccc----ccchhh----HHHHHHHHHhhhhhccCcccccccccCCCCCCCHH
Confidence 23579999999999987 999999765322 122222 23333333322 22333 33579999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 181 erqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
|||||+|||||+.+|+|||||||||+||+.++..+++.|+++++ |+|||++||++ +.+ ..||+|++|++|++++
T Consensus 144 qkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~----~~Tvi~itH~l-~~~-~~~D~i~vl~~G~iv~ 217 (242)
T d1mv5a_ 144 QRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK----GRTTLVIAHRL-STI-VDADKIYFIEKGQITG 217 (242)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHT----TSEEEEECCSH-HHH-HHCSEEEEEETTEECC
T ss_pred HHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHcC----CCEEEEEECCH-HHH-HhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999973 44999999996 344 5699999999999999
Q ss_pred ecChhhHHH
Q 044030 261 FGPATAANE 269 (449)
Q Consensus 261 ~g~~~~~~~ 269 (449)
.|+++++.+
T Consensus 218 ~G~~~eLl~ 226 (242)
T d1mv5a_ 218 SGKHNELVA 226 (242)
T ss_dssp CSCHHHHHH
T ss_pred ECCHHHHHh
Confidence 999998764
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1e-49 Score=382.73 Aligned_cols=215 Identities=26% Similarity=0.383 Sum_probs=177.2
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.|+++||+|+ |. .....+|+||||+|++||++||+||||||||||+++|+|+++|. +|+|.+||.+...
T Consensus 13 ~I~~~nvsf~-Y~---~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~ 85 (253)
T d3b60a1 13 DLEFRNVTFT-YP---GREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLA 85 (253)
T ss_dssp CEEEEEEEEC-SS---SSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHH
T ss_pred EEEEEEEEEE-eC---CCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCC---ccEEEECCcccchhhhh
Confidence 5999999998 32 13457999999999999999999999999999999999999874 9999999998642
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHH-----HHHHHHHc--CCchhhCccCCCCChHHHHH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKER-----AEVTIREM--GLQDAMNTRIRRLSGGQKRR 184 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~-----v~~~l~~l--gL~~~~~~~~~~LSgGerqR 184 (449)
.++.++||+|++.+++. |+++|+.++.. ...+.++..+. +.+.++.+ |++...+..+.+||||||||
T Consensus 86 ~~r~~i~~v~Q~~~l~~~-ti~~n~~~~~~----~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQR 160 (253)
T d3b60a1 86 SLRNQVALVSQNVHLFND-TVANNIAYART----EEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQR 160 (253)
T ss_dssp HHHHTEEEECSSCCCCSS-BHHHHHHTTTT----SCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHH
T ss_pred hhhheEEEEeeccccCCc-chhhhhhhcCc----ccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHH
Confidence 12469999999998876 99999987632 12233322211 12334444 45555666778999999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecCh
Q 044030 185 VSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPA 264 (449)
Q Consensus 185 v~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~ 264 (449)
|+|||||+.+|+|||||||||+||+.++..|++.|+++.+ ++|||++||++. . ...||+|++|++|+|+++|++
T Consensus 161 vaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~----~~Tvi~itH~l~-~-~~~~D~v~vl~~G~Iv~~G~~ 234 (253)
T d3b60a1 161 IAIARALLRDSPILILDEATSALDTESERAIQAALDELQK----NRTSLVIAHRLS-T-IEQADEIVVVEDGIIVERGTH 234 (253)
T ss_dssp HHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT----TSEEEEECSCGG-G-TTTCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhcc----CCEEEEEECCHH-H-HHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999973 449999999974 4 478999999999999999999
Q ss_pred hhHHH
Q 044030 265 TAANE 269 (449)
Q Consensus 265 ~~~~~ 269 (449)
+++.+
T Consensus 235 ~eLl~ 239 (253)
T d3b60a1 235 SELLA 239 (253)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98764
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=3e-50 Score=386.22 Aligned_cols=210 Identities=28% Similarity=0.400 Sum_probs=174.5
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeccc----
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKAL---- 112 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~---- 112 (449)
.|+++||+|+ |.. +.+.+|+||||+|++||++||+||||||||||+++|+|+++|. +|+|.++|.++..
T Consensus 16 ~I~~~nvsf~-Y~~---~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~ 88 (255)
T d2hyda1 16 RIDIDHVSFQ-YND---NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTG 88 (255)
T ss_dssp CEEEEEEEEC-SCS---SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHH
T ss_pred EEEEEEEEEE-eCC---CCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCcc---ccccccCCEEcccCCHH
Confidence 5999999998 321 3457999999999999999999999999999999999999874 9999999998642
Q ss_pred -ccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCch-------hhCc----cCCCCChH
Q 044030 113 -AYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQD-------AMNT----RIRRLSGG 180 (449)
Q Consensus 113 -~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~----~~~~LSgG 180 (449)
.++.++||+|++.+|+. ||+||+.|+.. .... +++.+.++..++.+ ..++ ...+||||
T Consensus 89 ~lr~~i~~v~Q~~~lf~~-Ti~eNi~~g~~-----~~~~----~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgG 158 (255)
T d2hyda1 89 SLRNQIGLVQQDNILFSD-TVKENILLGRP-----TATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGG 158 (255)
T ss_dssp HHHHTEEEECSSCCCCSS-BHHHHHGGGCS-----SCCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHH
T ss_pred HhhheeeeeeccccCCCC-CHHHHHhccCc-----CCCH----HHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHH
Confidence 13579999999998865 99999987632 1222 23444555555433 2233 34679999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEE
Q 044030 181 QKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVY 260 (449)
Q Consensus 181 erqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~ 260 (449)
||||++|||||+.+|+++|||||||+||+.++..|++.|+++.+ ++|+|++||++. ....||+|++|++|++++
T Consensus 159 q~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~----~~TvI~itH~~~--~~~~~D~ii~l~~G~iv~ 232 (255)
T d2hyda1 159 QKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK----DRTTLIVAHRLS--TITHADKIVVIENGHIVE 232 (255)
T ss_dssp HHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT----TSEEEEECSSGG--GTTTCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhc----CCEEEEEeCCHH--HHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999873 449999999974 457899999999999999
Q ss_pred ecChhhHHH
Q 044030 261 FGPATAANE 269 (449)
Q Consensus 261 ~g~~~~~~~ 269 (449)
.|+++++.+
T Consensus 233 ~G~~~eLl~ 241 (255)
T d2hyda1 233 TGTHRELIA 241 (255)
T ss_dssp EECHHHHHH
T ss_pred ECCHHHHHh
Confidence 999998764
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8.9e-48 Score=364.83 Aligned_cols=206 Identities=27% Similarity=0.400 Sum_probs=180.0
Q ss_pred eeEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccc--
Q 044030 36 VFLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALA-- 113 (449)
Q Consensus 36 ~~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~-- 113 (449)
+.|+++||+++ .+|+||||+|++||++||+||||||||||+++|+|+. + .+|+|.++|++....
T Consensus 2 ~il~~~dv~~~----------~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~---~~G~I~~~g~~i~~~~~ 67 (231)
T d1l7vc_ 2 IVMQLQDVAES----------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-S---GKGSIQFAGQPLEAWSA 67 (231)
T ss_dssp EEEEEEEECCT----------TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-C---CSSEEEESSSBGGGSCH
T ss_pred eEEEEECcccC----------ceecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-C---CceEEEECCEECCcCCH
Confidence 56899998653 3799999999999999999999999999999999975 3 379999999875321
Q ss_pred ---cCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHH
Q 044030 114 ---YGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIE 190 (449)
Q Consensus 114 ---~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~a 190 (449)
....+|++|+.......++++++.+...- ....+.++++++.+++.+..++++.+|||||||||+||+|
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~a 139 (231)
T d1l7vc_ 68 TKLALHRAYLSQQQTPPFATPVWHYLTLHQHD--------KTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAV 139 (231)
T ss_dssp HHHHHHEEEECSCCCCCSSCBHHHHHHHHCSC--------TTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHH
T ss_pred HHHHhhceeeeccccCCccccHHHHhhhccch--------hhHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHH
Confidence 13579999998877778999999875321 1234567889999999999999999999999999999999
Q ss_pred HHh-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecC
Q 044030 191 ILT-------RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGP 263 (449)
Q Consensus 191 L~~-------~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~ 263 (449)
|++ +|+||||||||+|||+.++..+.++|++++++ |. |||++|||+ .++.++|||+++|++|++++.|+
T Consensus 140 l~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~-g~--tii~vtHdl-~~~~~~~dri~vl~~G~iv~~G~ 215 (231)
T d1l7vc_ 140 VLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQ-GL--AIVMSSHDL-NHTLRHAHRAWLLKGGKMLASGR 215 (231)
T ss_dssp HHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHT-TC--EEEECCCCH-HHHHHHCSBCCBEETTEECCCSB
T ss_pred HHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhC-CC--EEEEEeCCH-HHHHHHCCEEEEEECCEEEEECC
Confidence 997 77999999999999999999999999999854 55 999999996 58999999999999999999999
Q ss_pred hhhH
Q 044030 264 ATAA 267 (449)
Q Consensus 264 ~~~~ 267 (449)
++++
T Consensus 216 ~~ev 219 (231)
T d1l7vc_ 216 REEV 219 (231)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9876
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.4e-45 Score=342.38 Aligned_cols=196 Identities=24% Similarity=0.354 Sum_probs=166.9
Q ss_pred eEEEEeeEEEEeecCcccccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCc
Q 044030 37 FLTWKDLTVTIVSNGKKGSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGT 116 (449)
Q Consensus 37 ~l~~~nls~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~ 116 (449)
.|+++||++. + +++||+||||+|++||++||+||||||||||+|+|+|+++|. +|+|.+||++....+..
T Consensus 2 ~lev~~ls~~-y------~~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~---~G~I~~~g~~i~~~~~~ 71 (200)
T d1sgwa_ 2 KLEIRDLSVG-Y------DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKVKGK 71 (200)
T ss_dssp EEEEEEEEEE-S------SSEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGGGGG
T ss_pred eEEEEEEEEE-e------CCeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccC---CCEEEECCEehhHhcCc
Confidence 4899999998 2 246999999999999999999999999999999999999884 99999999987655567
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCC
Q 044030 117 SAYVTQDDTLITTLTVKEAVYYSAQLQLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPK 196 (449)
Q Consensus 117 i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~ 196 (449)
++|+||+..++..+|+.|++.+...++.. ... ++.+.+.++.+++.+ .++++.+|||||||||+||+||+.+|+
T Consensus 72 i~~~~~~~~~~~~~t~~~~l~~~~~~~~~-~~~----~~~~~~~l~~~~~~~-~~~~~~~LSgG~~qrv~ia~al~~~~~ 145 (200)
T d1sgwa_ 72 IFFLPEEIIVPRKISVEDYLKAVASLYGV-KVN----KNEIMDALESVEVLD-LKKKLGELSQGTIRRVQLASTLLVNAE 145 (200)
T ss_dssp EEEECSSCCCCTTSBHHHHHHHHHHHTTC-CCC----HHHHHHHHHHTTCCC-TTSBGGGSCHHHHHHHHHHHHTTSCCS
T ss_pred EEEEeecccCCCCcCHHHHHHHHHHhcCC-ccC----HHHHHHHHHHcCCcc-cccccCcCCCcHHHHHHHHHHHhcCCC
Confidence 99999999999999999999988776522 122 234667788888765 456789999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeC
Q 044030 197 LLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSA 255 (449)
Q Consensus 197 llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~ 255 (449)
++||||||+|||+.++..+++.|.++.++.+. +||+++|+. .+||.+.+|++
T Consensus 146 llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~--~ii~~~~~l-----~~~D~~~~l~~ 197 (200)
T d1sgwa_ 146 IYVLDDPVVAIDEDSKHKVLKSILEILKEKGI--VIISSREEL-----SYCDVNENLHK 197 (200)
T ss_dssp EEEEESTTTTSCTTTHHHHHHHHHHHHHHHSE--EEEEESSCC-----TTSSEEEEGGG
T ss_pred EEEEcCcccccCHHHHHHHHHHHHHHHhCCCE--EEEEEechh-----hhcchhhheee
Confidence 99999999999999999999999999866433 555555553 47999999864
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.1e-45 Score=359.80 Aligned_cols=189 Identities=22% Similarity=0.352 Sum_probs=154.2
Q ss_pred cccceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHH
Q 044030 54 GSSSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVK 133 (449)
Q Consensus 54 ~~~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~ 133 (449)
.+++||+||||+|++||++||+||||||||||+++|+|+++|. +|+|.++|+ ++|++|++.+++. ||+
T Consensus 47 ~g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g~--------i~~v~Q~~~l~~~-tv~ 114 (281)
T d1r0wa_ 47 VGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSGR--------VSFCSQFSWIMPG-TIK 114 (281)
T ss_dssp TTCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEECCSC--------EEEECSSCCCCSE-EHH
T ss_pred CCCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCC---CcEEEECCE--------EEEEeccccccCc-eee
Confidence 3468999999999999999999999999999999999999874 999999983 8999999999886 999
Q ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHHHHHc-------CCchh----hCccCCCCChHHHHHHHHHHHHHhCCCEEEEeC
Q 044030 134 EAVYYSAQLQLPDTMPKSDKKERAEVTIREM-------GLQDA----MNTRIRRLSGGQKRRVSISIEILTRPKLLFLDE 202 (449)
Q Consensus 134 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~----~~~~~~~LSgGerqRv~ia~aL~~~P~llllDE 202 (449)
||+.|+.. ..... ...+++.. .+.+. .+..+.+|||||||||+|||||+++|+||||||
T Consensus 115 eni~~~~~------~~~~~----~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDE 184 (281)
T d1r0wa_ 115 ENIIFGVS------YDEYR----YKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDS 184 (281)
T ss_dssp HHHTTTSC------CCHHH----HHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEES
T ss_pred cccccccc------ccchH----HHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcC
Confidence 99977532 12222 22222222 23222 334456799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEecChhhHHH
Q 044030 203 PTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFGPATAANE 269 (449)
Q Consensus 203 PtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g~~~~~~~ 269 (449)
||++||+.+...+++.+.... .. ++|+|++||++ +..+.||+|++|++|+++++|+++++..
T Consensus 185 Pts~LD~~~~~~i~~~~~~~~-~~--~~tvi~itH~~--~~l~~aDrI~vl~~G~i~~~Gt~~eL~~ 246 (281)
T d1r0wa_ 185 PFGYLDVFTEEQVFESCVCKL-MA--NKTRILVTSKM--EHLRKADKILILHQGSSYFYGTFSELQS 246 (281)
T ss_dssp CCCSSCHHHHHHHHHHCCCCC-TT--TSEEEEECSCH--HHHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHh-hC--CCEEEEEechH--HHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999987643332 23 44999999996 3567899999999999999999998753
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.67 E-value=6.1e-19 Score=156.94 Aligned_cols=155 Identities=14% Similarity=0.149 Sum_probs=99.4
Q ss_pred EEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCC----CCCCCCCCHHHHHHHHHhccCCCC
Q 044030 72 LAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQD----DTLITTLTVKEAVYYSAQLQLPDT 147 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~----~~l~~~lTv~e~l~~~~~~~~~~~ 147 (449)
++|+||||||||||+++|+|.+++ ..|.+...+.+.....++.++.... .......+..+. ..
T Consensus 3 i~I~G~~G~GKSTLl~~i~~~l~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~---- 69 (178)
T d1ye8a1 3 IIITGEPGVGKTTLVKKIVERLGK---RAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSK------KL---- 69 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGG---GEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCS------SE----
T ss_pred EEEECCCCcHHHHHHHHHHhcCCC---CcceEEECCcchHHHHHhhhhhhhhhhHHHHHHhhhhhhhh------hh----
Confidence 789999999999999999999876 3899988876532211122221110 000000000000 00
Q ss_pred CCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcC
Q 044030 148 MPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDG 227 (449)
Q Consensus 148 ~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g 227 (449)
..+ . ..+.....+|+|+++|.++++++..+|+++++|||.... .....+.+.+.++.++.+
T Consensus 70 ~~~-------------~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~--~~~~~~~~~l~~~l~~~~ 130 (178)
T d1ye8a1 70 VGS-------------Y----GVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKME--LFSKKFRDLVRQIMHDPN 130 (178)
T ss_dssp ETT-------------E----EECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTG--GGCHHHHHHHHHHHTCTT
T ss_pred hhh-------------h----hcCcchhhhhhhhhHHHHHHHHHhcCCCceeecCCCccc--hhhHHHHHHHHHHhccCC
Confidence 000 0 001112247899999999999999999999999985433 334556666666654555
Q ss_pred CCeEEEEEecCCcHHHHhhcCeEEEeeCCeEEEec
Q 044030 228 IGRTIIASIHQPSSEVFQLFHNLCLLSAGQTVYFG 262 (449)
Q Consensus 228 ~g~tii~~tH~~~~~i~~~~D~v~~l~~G~iv~~g 262 (449)
. ++|+++|+. ....++|++..+.+|+++.-+
T Consensus 131 ~--~il~~~h~~--~~~~~~~~i~~~~~~~i~~v~ 161 (178)
T d1ye8a1 131 V--NVVATIPIR--DVHPLVKEIRRLPGAVLIELT 161 (178)
T ss_dssp S--EEEEECCSS--CCSHHHHHHHTCTTCEEEECC
T ss_pred C--EEEEEEccH--HHHHhhceEEEEeCCEEEEEC
Confidence 5 999999995 356789999999999997654
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.28 E-value=1.1e-10 Score=111.60 Aligned_cols=77 Identities=22% Similarity=0.258 Sum_probs=64.2
Q ss_pred CCCCChHHHHHHHHHHHH----HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCe
Q 044030 174 IRRLSGGQKRRVSISIEI----LTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHN 249 (449)
Q Consensus 174 ~~~LSgGerqRv~ia~aL----~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~ 249 (449)
+..+|+|||+...++..+ ...|.++++|||-++|+|.....+.+.|++.++ +.-||++||.| .+.+.+|+
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~----~~QviitTHsp--~~~~~~d~ 290 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK----HTQFIVITHNK--IVMEAADL 290 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT----TSEEEEECCCT--TGGGGCSE
T ss_pred hhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc----CCEEEEEECCH--HHHHhccc
Confidence 468999999998877654 346789999999999999999999999999874 23899999997 46789999
Q ss_pred EEE--eeCC
Q 044030 250 LCL--LSAG 256 (449)
Q Consensus 250 v~~--l~~G 256 (449)
++. +.+|
T Consensus 291 ~~~v~~~~g 299 (308)
T d1e69a_ 291 LHGVTMVNG 299 (308)
T ss_dssp EEEEEESSS
T ss_pred EEEEEEeCC
Confidence 866 4455
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.89 E-value=1.4e-09 Score=107.67 Aligned_cols=74 Identities=19% Similarity=0.246 Sum_probs=62.3
Q ss_pred CCCChHHHHHHHHHHHH----HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeE
Q 044030 175 RRLSGGQKRRVSISIEI----LTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNL 250 (449)
Q Consensus 175 ~~LSgGerqRv~ia~aL----~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v 250 (449)
..+|||||.++++|..+ ..++++++||||+++||+..+..+.+.|++++.. +.-+|++||+| .+...+|++
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~---~~Q~I~iTH~~--~~~~~ad~~ 405 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNP---DLQFIVISLKN--TMFEKSDAL 405 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBT---TBEEEEECSCH--HHHTTCSEE
T ss_pred hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCC---CCEEEEEeCCH--HHHHhcccE
Confidence 67899999998877544 3467899999999999999999999999988632 33699999996 589999998
Q ss_pred EEe
Q 044030 251 CLL 253 (449)
Q Consensus 251 ~~l 253 (449)
+.+
T Consensus 406 ~~V 408 (427)
T d1w1wa_ 406 VGV 408 (427)
T ss_dssp EEE
T ss_pred EEE
Confidence 755
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.30 E-value=3.6e-07 Score=84.28 Aligned_cols=47 Identities=15% Similarity=0.084 Sum_probs=36.3
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhhcCCCeEEEEEecCC
Q 044030 191 ILTRPKLLFLDEPTSGLDSAASYYVMS-RIAKLGQRDGIGRTIIASIHQP 239 (449)
Q Consensus 191 L~~~P~llllDEPtsgLD~~~~~~i~~-~l~~l~~~~g~g~tii~~tH~~ 239 (449)
-+.+..++|+||+.+|=++.....+.. .+..+..+.+. .+|++||..
T Consensus 117 ~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~--~~i~tTH~~ 164 (234)
T d1wb9a2 117 NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKA--LTLFATHYF 164 (234)
T ss_dssp HCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCC--EEEEECSCG
T ss_pred hcccccEEeecccccCCChhhhhHHHHHhhhhhhccccc--eEEEecchH
Confidence 344567999999999999999988754 56677655444 789999974
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.27 E-value=2.1e-06 Score=78.52 Aligned_cols=52 Identities=21% Similarity=0.144 Sum_probs=37.7
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhhcCCCeEEEEEecCCcHHHHhhc
Q 044030 191 ILTRPKLLFLDEPTSGLDSAASYYVM-SRIAKLGQRDGIGRTIIASIHQPSSEVFQLF 247 (449)
Q Consensus 191 L~~~P~llllDEPtsgLD~~~~~~i~-~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~ 247 (449)
.+.+..++|+||+.+|=|+.....+. ..+..+.+ .+. .++++||.. ++..+.
T Consensus 111 ~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~-~~~--~~i~tTH~~--eL~~l~ 163 (224)
T d1ewqa2 111 EATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE-RRA--YTLFATHYF--ELTALG 163 (224)
T ss_dssp HCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH-HTC--EEEEECCCH--HHHTCC
T ss_pred cCCCCcEEeecccccCcchhhhcchHHHHHHHHhh-cCc--ceEEeeech--hhhhhh
Confidence 34566799999999999998877754 44455664 444 899999984 565543
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=98.02 E-value=3.3e-05 Score=71.65 Aligned_cols=159 Identities=16% Similarity=0.161 Sum_probs=78.3
Q ss_pred cceeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHH
Q 044030 56 SSILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEA 135 (449)
Q Consensus 56 ~~iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~ 135 (449)
.+-|+++..=+.+|+++.|.|++|+|||||+.-|+-.... ..| ..+.|+. .+++..+.
T Consensus 22 ~~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~---~~g-------------~~v~~~s------~E~~~~~~ 79 (277)
T d1cr2a_ 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGT---AMG-------------KKVGLAM------LEESVEET 79 (277)
T ss_dssp CTTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHH---TSC-------------CCEEEEE------SSSCHHHH
T ss_pred chhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHhhhh---hcc-------------cceeEee------eccchhhH
Confidence 3455555444799999999999999999998777632100 011 1244443 23455554
Q ss_pred HHHHHhc--cCCCCCCHHHH-----HHHHHHHHHHcCCchhhCcc--CCCCChHHHHHHHHHHHHHhCCCEEEEeCC---
Q 044030 136 VYYSAQL--QLPDTMPKSDK-----KERAEVTIREMGLQDAMNTR--IRRLSGGQKRRVSISIEILTRPKLLFLDEP--- 203 (449)
Q Consensus 136 l~~~~~~--~~~~~~~~~~~-----~~~v~~~l~~lgL~~~~~~~--~~~LSgGerqRv~ia~aL~~~P~llllDEP--- 203 (449)
..-.... ..+........ ..+.+++++.+.-....... ....+..+.....-...--.+|+++++|=-
T Consensus 80 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvID~l~~l 159 (277)
T d1cr2a_ 80 AEDLIGLHNRVRLRQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIV 159 (277)
T ss_dssp HHHHHHHHTTCCGGGCHHHHHHHHHTSHHHHHHHHHHSSSCEEEECCC-CCCHHHHHHHHHHHHHTTCCSEEEEEEEEC-
T ss_pred HhHHHHHhhcCCchhhcccccchhhhHHHHHHHHHhhccceeeeeccccchhHHHHHHHhhhhhhccCcceEEEcccccc
Confidence 3211111 11100001100 11233444433111111111 123333332222212223457999999832
Q ss_pred --CCCC--CHHHHHHHHHHHHHHHhhcCCCeEEEEEecC
Q 044030 204 --TSGL--DSAASYYVMSRIAKLGQRDGIGRTIIASIHQ 238 (449)
Q Consensus 204 --tsgL--D~~~~~~i~~~l~~l~~~~g~g~tii~~tH~ 238 (449)
..+- +......++..|+++|++.+. +||+++|=
T Consensus 160 ~~~~~~~~~~~~~~~~~~~l~~lA~~~~i--~vi~~~q~ 196 (277)
T d1cr2a_ 160 VSASGESDERKMIDNLMTKLKGFAKSTGV--VLVVICHL 196 (277)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHCC--EEEEEEEC
T ss_pred cccccccchhHHHHHHHHHHHHHhhhccc--cceeeccc
Confidence 1111 123456678889999988877 88888774
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=97.79 E-value=8.9e-07 Score=77.19 Aligned_cols=35 Identities=23% Similarity=0.172 Sum_probs=30.3
Q ss_pred eeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 58 iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-+++.++.+.+| +++|+|||||||||+|.+|.-.+
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence 467888888876 99999999999999999997544
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=97.54 E-value=0.00064 Score=60.99 Aligned_cols=152 Identities=13% Similarity=0.130 Sum_probs=84.1
Q ss_pred EEEecCeEEEEECCCCCcHHHHHHHHHcCC-CCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHHHHHHHhc
Q 044030 64 GYAKPGHLLAIMGPSGSGKTTLLDALAGRL-GSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQL 142 (449)
Q Consensus 64 ~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~-~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~ 142 (449)
+=+++|.++.|.||+|||||||..-++--. .. ...+.|+.- +.+..+.......+
T Consensus 21 GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~------------------~~~~~~is~------e~~~~~~~~~~~~~ 76 (242)
T d1tf7a2 21 GGFFKDSIILATGATGTGKTLLVSRFVENACAN------------------KERAILFAY------EESRAQLLRNAYSW 76 (242)
T ss_dssp SSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT------------------TCCEEEEES------SSCHHHHHHHHHTT
T ss_pred CCCcCCeEEEEEeCCCCCHHHHHHHHHHHHHHh------------------ccccceeec------cCCHHHHHHHHHHc
Confidence 348999999999999999999987665422 11 012334432 23444444433322
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHH-HHhCCCEEEEeCCCC---CCCHHHHHHHHHH
Q 044030 143 QLPDTMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIE-ILTRPKLLFLDEPTS---GLDSAASYYVMSR 218 (449)
Q Consensus 143 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~a-L~~~P~llllDEPts---gLD~~~~~~i~~~ 218 (449)
. ....+ +...+.....+.........+.- -.|..+ --.+|++++.|--+. +.+.......+..
T Consensus 77 ~----~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~i~~~~~~~vviDs~~~~~~~~~~~~~~~~~~~ 143 (242)
T d1tf7a2 77 G----MDFEE--------MERQNLLKIVCAYPESAGLEDHL-QIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIG 143 (242)
T ss_dssp S----CCHHH--------HHHTTSEEECCCCGGGSCHHHHH-HHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHH
T ss_pred C----CChHH--------HhhcCceEEEEeecchhhHHHHH-HHHHHHHHhcCCceeeeecchhhhcCCCHHHHHHHHHH
Confidence 1 11111 11122222222222222222211 112222 234789999986543 4567777777777
Q ss_pred HHHHHhhcCCCeEEEEEecCC---------cHHHHhhcCeEEEee
Q 044030 219 IAKLGQRDGIGRTIIASIHQP---------SSEVFQLFHNLCLLS 254 (449)
Q Consensus 219 l~~l~~~~g~g~tii~~tH~~---------~~~i~~~~D~v~~l~ 254 (449)
|..++++.+. +++++.|-. ...+..++|-++.|.
T Consensus 144 l~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~ 186 (242)
T d1tf7a2 144 VTGYAKQEEI--TGLFTNTSDQFMGAHSITDSHISTITDTIILLQ 186 (242)
T ss_dssp HHHHHHHTTC--EEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred HHHHHHHcCC--eEEEEEeeEeeccccccCCcceeeecceEEEEE
Confidence 7777777766 998888742 113556889998885
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=97.42 E-value=0.00057 Score=62.66 Aligned_cols=148 Identities=18% Similarity=0.232 Sum_probs=75.6
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCCCCCHHHHHHHHHhccCCC
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLITTLTVKEAVYYSAQLQLPD 146 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~ 146 (449)
.||+++.|.|++|+|||||+-.|+--+.. |.=. .|... .....+.|+.-+...- .+.+-+ .....
T Consensus 27 ~pg~~~~i~G~~G~GKS~l~l~la~~ia~-----g~~~-~~~~~-~~~~~vl~~~~E~~~~---~~~~Rl--~~~~~--- 91 (274)
T d1nlfa_ 27 VAGTVGALVSPGGAGKSMLALQLAAQIAG-----GPDL-LEVGE-LPTGPVIYLPAEDPPT---AIHHRL--HALGA--- 91 (274)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHT-----CCCT-TCCCC-CCCCCEEEEESSSCHH---HHHHHH--HHHHT---
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHHHHHHc-----CCCc-ccccc-cCCCceEEEeccchHH---HHHHHH--HHHhh---
Confidence 46999999999999999998766643211 1100 11111 1112355554432100 111111 11110
Q ss_pred CCCHHHHHHHHHHHHHHcCCchhhCccCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCC-----CCCHHHHHHHHHHHHH
Q 044030 147 TMPKSDKKERAEVTIREMGLQDAMNTRIRRLSGGQKRRVSISIEILTRPKLLFLDEPTS-----GLDSAASYYVMSRIAK 221 (449)
Q Consensus 147 ~~~~~~~~~~v~~~l~~lgL~~~~~~~~~~LSgGerqRv~ia~aL~~~P~llllDEPts-----gLD~~~~~~i~~~l~~ 221 (449)
...... .......+.+....+.......- ..+.-...-..+|+++++|--++ --|......++..|+.
T Consensus 92 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~ 164 (274)
T d1nlfa_ 92 HLSAEE----RQAVADGLLIQPLIGSLPNIMAP---EWFDGLKRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEA 164 (274)
T ss_dssp TSCHHH----HHHHHHHEEECCCTTSCCCTTSH---HHHHHHHHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHH
T ss_pred ccChhh----hhcccccceeccccCccchhHHH---HHHHHHHHhccCccEEecCchhhhccccccchhhHHHHHHHHHH
Confidence 111111 12222333222222222222221 22222234467999999995532 2266777889999999
Q ss_pred HHhhcCCCeEEEEEecC
Q 044030 222 LGQRDGIGRTIIASIHQ 238 (449)
Q Consensus 222 l~~~~g~g~tii~~tH~ 238 (449)
++++.+. +||++.|-
T Consensus 165 la~~~~~--~vi~v~H~ 179 (274)
T d1nlfa_ 165 IAADTGC--SIVFLHHA 179 (274)
T ss_dssp HHHHHCC--EEEEEEEC
T ss_pred HhhcCCC--ceehhhhc
Confidence 9988776 99998875
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.40 E-value=3.5e-05 Score=65.34 Aligned_cols=23 Identities=57% Similarity=0.644 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+++|+|++|||||||++.|+..+
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l 26 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPAL 26 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 78999999999999999998754
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.38 E-value=4.4e-05 Score=69.29 Aligned_cols=35 Identities=29% Similarity=0.471 Sum_probs=25.1
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILI 105 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~ 105 (449)
+|+.++++|+||+|||||+|.|.|...- ..|+|.-
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~---~T~~vs~ 128 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKL---RVSEVSE 128 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCC---C------
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhh---hccCccc
Confidence 5899999999999999999999986533 3677653
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.38 E-value=4e-05 Score=66.78 Aligned_cols=26 Identities=35% Similarity=0.696 Sum_probs=23.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCC
Q 044030 69 GHLLAIMGPSGSGKTTLLDALAGRLG 94 (449)
Q Consensus 69 Ge~~~IlGpnGaGKSTLL~~l~G~~~ 94 (449)
|.+++|+||||||||||.+.|....+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 88999999999999999999987653
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.34 E-value=5.1e-05 Score=64.62 Aligned_cols=26 Identities=42% Similarity=0.650 Sum_probs=24.0
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.|++++|.||+||||||+.+.|+..+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999999865
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.24 E-value=7.2e-05 Score=63.52 Aligned_cols=27 Identities=37% Similarity=0.637 Sum_probs=24.3
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+++.++.|+||+||||||+.+.|+..+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999999865
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.22 E-value=0.00012 Score=71.10 Aligned_cols=28 Identities=32% Similarity=0.609 Sum_probs=23.6
Q ss_pred eEEEecCeEEEEECCCCCcHHHHHHHHH
Q 044030 63 TGYAKPGHLLAIMGPSGSGKTTLLDALA 90 (449)
Q Consensus 63 s~~i~~Ge~~~IlGpnGaGKSTLL~~l~ 90 (449)
.+.+.++.+++|+|||||||||+|.+|+
T Consensus 19 ~i~f~~~~l~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 19 KVGFGESNFTSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp EEECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred EEeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 3444656699999999999999999985
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.20 E-value=6e-05 Score=64.44 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=22.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCC
Q 044030 70 HLLAIMGPSGSGKTTLLDALAGRLGS 95 (449)
Q Consensus 70 e~~~IlGpnGaGKSTLL~~l~G~~~~ 95 (449)
.+++|+|++|||||||++.|...+..
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~ 27 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVR 27 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 37899999999999999988876643
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.14 E-value=0.0001 Score=62.56 Aligned_cols=27 Identities=30% Similarity=0.383 Sum_probs=24.4
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
++|-++.|+|++||||||+-+.|+-.+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999999765
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.09 E-value=4.8e-05 Score=69.32 Aligned_cols=35 Identities=34% Similarity=0.514 Sum_probs=22.7
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILI 105 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~ 105 (449)
+|..++++|+||+|||||+|.|.|-..- ..|+|.-
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~---~t~~vs~ 130 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGL---RTNEISE 130 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC--------------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHh---hhccccc
Confidence 5788999999999999999999986532 3677753
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=97.08 E-value=0.0029 Score=55.67 Aligned_cols=60 Identities=17% Similarity=0.115 Sum_probs=39.0
Q ss_pred hCCCEEEEeCCCCCC----CHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcH--------HHHhhcCeEEEee
Q 044030 193 TRPKLLFLDEPTSGL----DSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSS--------EVFQLFHNLCLLS 254 (449)
Q Consensus 193 ~~P~llllDEPtsgL----D~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~--------~i~~~~D~v~~l~ 254 (449)
.+|+++++|--+.-. +.......+..+...+++.+. |+++++|.... .....+|.++.+.
T Consensus 124 ~~~~~viiD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 195 (242)
T d1tf7a1 124 YRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGA--TTVMTTERIEEYGPIARYGVEEFVSDNVVILR 195 (242)
T ss_dssp HTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTC--EEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred hccchhhhhHHHHHHHhccChhHHHHHHHHHHHHHHhcCC--ceEEeecccccccccccCcceeeeccEEEEEE
Confidence 479999999765432 334444455555555556666 99999886431 3455788888775
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.03 E-value=0.00014 Score=61.82 Aligned_cols=23 Identities=39% Similarity=0.628 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.++|.||+|||||||.+.|+..+
T Consensus 9 ~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 9 TVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999864
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.00 E-value=0.00017 Score=64.32 Aligned_cols=26 Identities=38% Similarity=0.664 Sum_probs=23.3
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.|.++.|+||||||||||.+.|.-..
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~ 26 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQ 26 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhC
Confidence 48899999999999999999997654
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.99 E-value=0.00013 Score=62.00 Aligned_cols=25 Identities=40% Similarity=0.585 Sum_probs=22.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRLGS 95 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~~~ 95 (449)
.+.|.||+|+|||||++.++..+..
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~ 27 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKS 27 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH
Confidence 5789999999999999999988743
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.98 E-value=0.00019 Score=60.84 Aligned_cols=27 Identities=33% Similarity=0.592 Sum_probs=23.6
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
++|-.++|.||+||||||+.+.|+-.+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 456679999999999999999999754
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.97 E-value=0.00019 Score=59.62 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=19.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 044030 70 HLLAIMGPSGSGKTTLLDALAG 91 (449)
Q Consensus 70 e~~~IlGpnGaGKSTLL~~l~G 91 (449)
+++.|.||+|||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999998754
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.93 E-value=0.00023 Score=60.23 Aligned_cols=26 Identities=23% Similarity=0.427 Sum_probs=23.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCC
Q 044030 69 GHLLAIMGPSGSGKTTLLDALAGRLG 94 (449)
Q Consensus 69 Ge~~~IlGpnGaGKSTLL~~l~G~~~ 94 (449)
..++.|.||+||||||+.+.|+..+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998763
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.91 E-value=0.00016 Score=63.19 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.++|+|++|||||||+|.|+|.-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 49999999999999999999953
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.85 E-value=0.00027 Score=59.38 Aligned_cols=24 Identities=46% Similarity=0.714 Sum_probs=21.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 044030 70 HLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 70 e~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.++.|.||+||||||+.+.|+..+
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999764
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.84 E-value=0.00028 Score=60.10 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=22.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 69 GHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 69 Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+.+++|.|++||||||+.+.|+-.+
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l 25 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNL 25 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999998765
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.81 E-value=0.00026 Score=59.68 Aligned_cols=22 Identities=41% Similarity=0.588 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 044030 72 LAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
++|+||+||||||+.+.|+-.+
T Consensus 7 I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999998654
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.77 E-value=0.00029 Score=60.81 Aligned_cols=23 Identities=52% Similarity=0.616 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
++||-||+|||||||.+.|+-.+
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l 46 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTL 46 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.75 E-value=0.00032 Score=58.14 Aligned_cols=23 Identities=39% Similarity=0.652 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.+.|+||+||||||+-+.|+-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 46788999999999999999755
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.71 E-value=0.00026 Score=61.19 Aligned_cols=26 Identities=42% Similarity=0.475 Sum_probs=23.3
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+|-++.|+|++||||||+-+.|+-.+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57799999999999999999998754
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.70 E-value=0.00036 Score=62.45 Aligned_cols=22 Identities=36% Similarity=0.625 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
+++|+||.|||||||++.|...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~ 23 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRY 23 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHH
Confidence 6899999999999999999753
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.70 E-value=0.00023 Score=61.47 Aligned_cols=21 Identities=29% Similarity=0.547 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 044030 72 LAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~ 92 (449)
+||+|++++|||||+|.|+|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999874
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.67 E-value=0.00044 Score=58.93 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.++|+|++|+|||||+|.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.66 E-value=0.00034 Score=60.03 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||+|.|.|..
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999853
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.61 E-value=0.0006 Score=58.90 Aligned_cols=29 Identities=28% Similarity=0.420 Sum_probs=25.7
Q ss_pred EEEecCeEEEEECCCCCcHHHHHHHHHcC
Q 044030 64 GYAKPGHLLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 64 ~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
+=+++|+++.|.||+|+|||||.-.++..
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcCCEEEEEEeCCCCCHHHHHHHHHHH
Confidence 46899999999999999999998877753
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.60 E-value=0.00046 Score=60.13 Aligned_cols=22 Identities=50% Similarity=0.825 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 044030 72 LAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
++|+||||||||||++.|+...
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6899999999999999997654
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.59 E-value=0.00052 Score=59.73 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=21.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 044030 69 GHLLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 69 Ge~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
..+++|+||+||||||+.+.|+-.
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~ 29 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999864
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.58 E-value=0.00048 Score=60.24 Aligned_cols=23 Identities=43% Similarity=0.608 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.++|+|++|||||||+|.|.|-.
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999853
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=96.57 E-value=0.0067 Score=53.90 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=16.0
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
...+++++||+|+||||.+==|+-.
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~ 35 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYF 35 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999987666643
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.55 E-value=0.00057 Score=58.28 Aligned_cols=22 Identities=45% Similarity=0.800 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
+++|+|.+|+|||||+|.|+|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999984
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.53 E-value=0.00063 Score=59.03 Aligned_cols=24 Identities=21% Similarity=0.508 Sum_probs=21.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 044030 70 HLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 70 e~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
..+.|+||||+|||||++.|....
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CcEEEECCCCCCHHHHHHHHHHhC
Confidence 478999999999999999988643
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.52 E-value=0.00056 Score=58.86 Aligned_cols=22 Identities=36% Similarity=0.641 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
-+||+|++|+|||||+|.|+|.
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 3799999999999999999985
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.51 E-value=0.00055 Score=56.70 Aligned_cols=22 Identities=41% Similarity=0.560 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 044030 72 LAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
++|+|++|+|||||++.|.+-.
T Consensus 3 I~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 3 LLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6799999999999999999853
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=96.47 E-value=0.0006 Score=56.54 Aligned_cols=21 Identities=33% Similarity=0.457 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 044030 72 LAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~ 92 (449)
++|+|++|+|||||++.+++-
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 679999999999999999864
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=96.47 E-value=0.00044 Score=59.46 Aligned_cols=21 Identities=29% Similarity=0.585 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 044030 72 LAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~ 92 (449)
+||+|.+|+|||||+|.|+|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999985
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.46 E-value=0.00044 Score=58.80 Aligned_cols=23 Identities=39% Similarity=0.520 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|||||||++.|.|-.
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998853
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=96.46 E-value=0.0007 Score=58.04 Aligned_cols=23 Identities=43% Similarity=0.676 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+++|+|++|+|||||+|.|+|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999863
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.46 E-value=0.00071 Score=58.96 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=22.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 69 GHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 69 Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-.+++|+||+||||||+.+.|+-.+
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998754
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.44 E-value=0.00067 Score=59.32 Aligned_cols=22 Identities=45% Similarity=0.735 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 044030 72 LAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
++|+||||||||||.+.|+-..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999997643
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=96.43 E-value=0.082 Score=48.21 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=21.0
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHc
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAG 91 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G 91 (449)
+..+++|.|..|.|||||.+.+..
T Consensus 43 ~~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 43 DSFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998864
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=96.43 E-value=0.00065 Score=56.68 Aligned_cols=22 Identities=41% Similarity=0.543 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 044030 72 LAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
++|+|++|||||||++.+.+-.
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999998864
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.38 E-value=0.0008 Score=59.45 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
++||-||+|||||||.+.|+-.+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l 26 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLL 26 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998755
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.36 E-value=0.00076 Score=58.78 Aligned_cols=27 Identities=26% Similarity=0.505 Sum_probs=23.7
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+.+.++.|+||+||||||+.+.|+-.+
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 467789999999999999999998743
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=96.36 E-value=0.00082 Score=57.02 Aligned_cols=22 Identities=50% Similarity=0.671 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 044030 72 LAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+.|+|++||||||+.+.|+-.+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5788999999999999999764
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=96.31 E-value=0.00098 Score=55.74 Aligned_cols=23 Identities=48% Similarity=0.739 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++|+|||||+|.|+|.-
T Consensus 3 kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999864
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.27 E-value=0.001 Score=57.63 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+++|+||+||||||..+.|+-.+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 67999999999999999998643
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=96.24 E-value=0.00052 Score=58.52 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|++++|||||+|.|.|..
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998853
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=96.23 E-value=0.0012 Score=57.12 Aligned_cols=26 Identities=35% Similarity=0.525 Sum_probs=22.3
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcC
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
++|=-++|+||+||||||+-+.|+-.
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~ 26 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKN 26 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHH
Confidence 35667889999999999999999953
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=96.22 E-value=0.00094 Score=57.87 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.+.|+||+||||||+.+.|+-.+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999998643
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=96.20 E-value=0.0011 Score=56.40 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRLG 94 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~~ 94 (449)
++.|.|++||||||+.+.|+..+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 678899999999999999998763
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.19 E-value=0.0011 Score=56.63 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 044030 72 LAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+.|+||+||||||+.+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999998643
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=96.16 E-value=0.0012 Score=56.24 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 044030 72 LAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+.|+|++||||||+-+.|+-.+
T Consensus 5 Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 5 IFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999998654
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.15 E-value=0.0011 Score=60.02 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=21.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 044030 70 HLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 70 e~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
..+.+.||+|||||||.++|++.+
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~ 56 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEET 56 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 458899999999999999999965
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=96.15 E-value=0.0011 Score=55.71 Aligned_cols=22 Identities=36% Similarity=0.619 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 044030 72 LAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
++|+|++|||||||++.|.|..
T Consensus 5 i~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 5 LLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCCHHHHHHHHcCCC
Confidence 6899999999999999998854
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.09 E-value=0.0013 Score=55.62 Aligned_cols=22 Identities=41% Similarity=0.558 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 044030 72 LAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+.|+|++||||||+-+.|+-.+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4577999999999999999765
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.08 E-value=0.0015 Score=56.24 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=21.3
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHc
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAG 91 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G 91 (449)
++-+++.++|++||||||+.+.++-
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4457999999999999999998853
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=96.04 E-value=0.0013 Score=56.53 Aligned_cols=21 Identities=43% Similarity=0.515 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 044030 72 LAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~ 92 (449)
+||+|+..||||||+|.|+|.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 899999999999999999984
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.03 E-value=0.0016 Score=56.67 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+++++|.+|||||||.+.|+..+
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l 26 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYL 26 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999654
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.02 E-value=0.00046 Score=57.79 Aligned_cols=21 Identities=38% Similarity=0.656 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 044030 72 LAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~ 92 (449)
++|+|++|+|||||+|.|+|.
T Consensus 3 I~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999985
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.99 E-value=0.0014 Score=57.37 Aligned_cols=22 Identities=32% Similarity=0.348 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
-++|+|++|+|||||++.|.+-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=95.97 E-value=0.0017 Score=55.70 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.+.|+||+||||||+.+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999999754
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=95.96 E-value=0.0018 Score=56.89 Aligned_cols=23 Identities=52% Similarity=0.793 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+++|.||+||||||+-+.|+-.+
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 88999999999999999999865
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.95 E-value=0.00097 Score=63.51 Aligned_cols=31 Identities=26% Similarity=0.433 Sum_probs=26.0
Q ss_pred EecCeEEEEECCCCCcHHHHHHHHHcCCCCC
Q 044030 66 AKPGHLLAIMGPSGSGKTTLLDALAGRLGSD 96 (449)
Q Consensus 66 i~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~ 96 (449)
++.|.-+.|.||.||||||||++|++..+++
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~ 193 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE 193 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred HHhCCCEEEEeeccccchHHHHHHhhhcccc
Confidence 3445558999999999999999999988763
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.94 E-value=0.0018 Score=57.17 Aligned_cols=23 Identities=39% Similarity=0.615 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+++|-||+||||||+-+.|+-.+
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57889999999999999999754
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=95.90 E-value=0.0017 Score=54.94 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
-++|+|.+|||||||++.|.|.
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999985
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.86 E-value=0.0021 Score=56.89 Aligned_cols=28 Identities=29% Similarity=0.453 Sum_probs=24.7
Q ss_pred EEEecCeEEEEECCCCCcHHHHHHHHHc
Q 044030 64 GYAKPGHLLAIMGPSGSGKTTLLDALAG 91 (449)
Q Consensus 64 ~~i~~Ge~~~IlGpnGaGKSTLL~~l~G 91 (449)
+=+++|+++.|.||+|||||||.-.++-
T Consensus 29 GGi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 29 GGVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SSEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 3589999999999999999999877764
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.85 E-value=0.0017 Score=59.53 Aligned_cols=23 Identities=26% Similarity=0.625 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-++|+|.+|+|||||+|.|.|..
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 38899999999999999999964
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.85 E-value=0.002 Score=55.18 Aligned_cols=22 Identities=41% Similarity=0.696 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 044030 72 LAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+.|+||+||||||+-+.|+-.+
T Consensus 3 I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999998644
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=95.84 E-value=0.0016 Score=62.09 Aligned_cols=26 Identities=35% Similarity=0.531 Sum_probs=22.6
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
..-.+||.||+|||||||++.|+..+
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~~~ 78 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGMLL 78 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998644
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.84 E-value=0.0023 Score=56.79 Aligned_cols=42 Identities=31% Similarity=0.413 Sum_probs=29.3
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHK 109 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~ 109 (449)
++|-++.|.|.||||||||.+.|.-.+... ...-.+.++|..
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~-~~~~~~~ldgD~ 63 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRD-RRVHAYRLDGDN 63 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHH-HCCCEEEECHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHh-cCceEEEEcchH
Confidence 578899999999999999999997543110 001245666653
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=95.78 E-value=0.0021 Score=54.15 Aligned_cols=21 Identities=38% Similarity=0.591 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 044030 72 LAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~ 92 (449)
++++|++|+|||||++.+.+-
T Consensus 5 i~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 678999999999999988764
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.77 E-value=0.002 Score=55.08 Aligned_cols=22 Identities=18% Similarity=0.360 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 044030 72 LAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+.|+||+||||||..+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 3 IILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999998643
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=95.74 E-value=0.0022 Score=55.44 Aligned_cols=21 Identities=38% Similarity=0.618 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 044030 71 LLAIMGPSGSGKTTLLDALAG 91 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G 91 (449)
++||.|++||||||+.+.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999864
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=95.72 E-value=0.0019 Score=55.87 Aligned_cols=24 Identities=38% Similarity=0.433 Sum_probs=21.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 044030 70 HLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 70 e~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-+++|-|+.||||||+++.|+..+
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999998754
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.70 E-value=0.0025 Score=54.71 Aligned_cols=22 Identities=36% Similarity=0.721 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 044030 72 LAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+.|+||+||||||+.+.|+-.+
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999998643
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=95.70 E-value=0.045 Score=50.08 Aligned_cols=29 Identities=38% Similarity=0.563 Sum_probs=26.0
Q ss_pred EEEecCeEEEEECCCCCcHHHHHHHHHcC
Q 044030 64 GYAKPGHLLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 64 ~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
+=++.|.++-|-||+|||||||.-.++..
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~~ 80 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVAQ 80 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCccCceEEEEecCCccchHHHHHHHHHH
Confidence 67899999999999999999998777664
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=95.69 E-value=0.0025 Score=55.49 Aligned_cols=23 Identities=39% Similarity=0.567 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.++|+||+||||||+-+.|+-.+
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999743
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.51 E-value=0.0039 Score=55.64 Aligned_cols=26 Identities=35% Similarity=0.456 Sum_probs=22.8
Q ss_pred EEecCeEEEEECCCCCcHHHHHHHHH
Q 044030 65 YAKPGHLLAIMGPSGSGKTTLLDALA 90 (449)
Q Consensus 65 ~i~~Ge~~~IlGpnGaGKSTLL~~l~ 90 (449)
=+++|+++.|.||+|||||||.--++
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 48999999999999999999975443
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=95.51 E-value=0.0028 Score=60.21 Aligned_cols=26 Identities=38% Similarity=0.524 Sum_probs=22.2
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
..-.+||.||+|||||||+..|...+
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CceEEeeeCCCCCCHHHHHHHHHHHH
Confidence 34579999999999999999998643
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.48 E-value=0.0032 Score=53.34 Aligned_cols=21 Identities=38% Similarity=0.669 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 044030 72 LAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~ 92 (449)
++|+|++|+|||||++.+.+-
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 789999999999999998764
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.47 E-value=0.0037 Score=56.14 Aligned_cols=23 Identities=39% Similarity=0.553 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.+.|.||+|+||||+.++|+...
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999854
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=95.47 E-value=0.0027 Score=53.78 Aligned_cols=21 Identities=43% Similarity=0.695 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 044030 72 LAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~ 92 (449)
++++|++|+|||||++.+.+-
T Consensus 19 I~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 19 ILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEESTTSSHHHHHHHHCCS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999999774
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.42 E-value=0.0035 Score=55.74 Aligned_cols=23 Identities=52% Similarity=0.609 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.+.|.||+|+|||||.++|+..+
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 37899999999999999998754
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.41 E-value=0.003 Score=59.51 Aligned_cols=43 Identities=23% Similarity=0.259 Sum_probs=31.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEecccccCcEEEEcCCCCCCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRLGSDTRQTGKILINGHKKALAYGTSAYVTQDDTLIT 128 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G~I~~~g~~~~~~~~~i~yv~Q~~~l~~ 128 (449)
++||-|++||||||+.+.|..++... . ....+..+++|+.+.+
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~--~-------------~~~~v~~Is~D~F~~~ 124 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRW--P-------------EHRRVELITTDGFLHP 124 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTS--T-------------TCCCEEEEEGGGGBCC
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHhhh--c-------------CCCceEEEeeeeeECC
Confidence 89999999999999999998766321 0 0123567777777655
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.39 E-value=0.0035 Score=53.01 Aligned_cols=21 Identities=38% Similarity=0.513 Sum_probs=18.9
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 044030 72 LAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~ 92 (449)
++++|++|+|||||++.+.+-
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 789999999999999988753
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.38 E-value=0.0033 Score=61.45 Aligned_cols=22 Identities=36% Similarity=0.708 Sum_probs=20.7
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 044030 72 LAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+||+|.+|+|||||+|+|.|.-
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999999964
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=95.38 E-value=0.0038 Score=56.07 Aligned_cols=26 Identities=15% Similarity=0.348 Sum_probs=22.2
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.+.++.|.||+|+|||||++.++-..
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence 56789999999999999999887543
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.37 E-value=0.0032 Score=53.00 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 044030 72 LAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~ 92 (449)
++++|++|+|||||++.+.+-
T Consensus 6 i~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999988764
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=95.36 E-value=0.0037 Score=55.91 Aligned_cols=22 Identities=41% Similarity=0.777 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
++||+|...||||||+++|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 5999999999999999999874
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.35 E-value=0.0029 Score=56.23 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=23.9
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCCC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRLG 94 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~~ 94 (449)
++.+++|-|+-||||||+++.|+..+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 367899999999999999999998763
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.32 E-value=0.0049 Score=54.36 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=24.4
Q ss_pred EEEecCeEEEEECCCCCcHHHHHHHHHc
Q 044030 64 GYAKPGHLLAIMGPSGSGKTTLLDALAG 91 (449)
Q Consensus 64 ~~i~~Ge~~~IlGpnGaGKSTLL~~l~G 91 (449)
+=+++|+++.|.|++|+|||||.--++-
T Consensus 29 GGl~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 29 GGLESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 4599999999999999999999866654
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.30 E-value=0.0042 Score=54.95 Aligned_cols=27 Identities=30% Similarity=0.455 Sum_probs=23.9
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
++|-+++|-|+.||||||+.+.|...+
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L 27 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEAL 27 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999988754
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.29 E-value=0.0039 Score=52.99 Aligned_cols=21 Identities=33% Similarity=0.675 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 044030 72 LAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~ 92 (449)
++|+|++|+|||||++.+.+-
T Consensus 7 i~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999987663
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=95.28 E-value=0.004 Score=55.52 Aligned_cols=22 Identities=45% Similarity=0.742 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 044030 72 LAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+.+.||+|+||||+.++|+..+
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~ 59 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASEL 59 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHhcc
Confidence 6789999999999999999765
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.25 E-value=0.0046 Score=54.25 Aligned_cols=26 Identities=31% Similarity=0.460 Sum_probs=23.5
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+|.+++|-|+.||||||+.+.|+-.+
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999999999998755
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.24 E-value=0.0048 Score=54.89 Aligned_cols=28 Identities=25% Similarity=0.259 Sum_probs=24.7
Q ss_pred EEEecCeEEEEECCCCCcHHHHHHHHHc
Q 044030 64 GYAKPGHLLAIMGPSGSGKTTLLDALAG 91 (449)
Q Consensus 64 ~~i~~Ge~~~IlGpnGaGKSTLL~~l~G 91 (449)
+=+++|+++.|.||+|||||||.-.++.
T Consensus 32 GGip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 32 GGIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999999877763
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.20 E-value=0.0044 Score=52.01 Aligned_cols=20 Identities=15% Similarity=0.522 Sum_probs=18.0
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 044030 72 LAIMGPSGSGKTTLLDALAG 91 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G 91 (449)
++++|++|+|||||++.+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999987774
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=95.17 E-value=0.0055 Score=54.35 Aligned_cols=26 Identities=31% Similarity=0.543 Sum_probs=21.0
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
++.+++++||+|+||||.+==|+-.+
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~ 30 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYY 30 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999875566543
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=95.16 E-value=0.0044 Score=55.35 Aligned_cols=22 Identities=50% Similarity=0.797 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 044030 72 LAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+.+.||+|+|||||.+++++.+
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~ 59 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHEL 59 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999854
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=95.14 E-value=0.0049 Score=54.08 Aligned_cols=21 Identities=33% Similarity=0.626 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 044030 71 LLAIMGPSGSGKTTLLDALAG 91 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G 91 (449)
++||.|+.||||||+.+++.-
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999863
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.13 E-value=0.0047 Score=54.72 Aligned_cols=22 Identities=41% Similarity=0.708 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 044030 72 LAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+.|.||+|+|||||.++++..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 6799999999999999999753
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.05 E-value=0.0046 Score=51.90 Aligned_cols=21 Identities=33% Similarity=0.586 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 044030 72 LAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~ 92 (449)
++++|++|+|||||++.+++-
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999987764
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.05 E-value=0.0047 Score=58.07 Aligned_cols=24 Identities=33% Similarity=0.560 Sum_probs=20.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 044030 70 HLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 70 e~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.-+.+.||+|+|||+|.|+|+..+
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhhcc
Confidence 445689999999999999999864
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.04 E-value=0.0057 Score=52.35 Aligned_cols=21 Identities=43% Similarity=0.586 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 044030 72 LAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~ 92 (449)
++|+|++|+|||||++.+.+-
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999998864
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.03 E-value=0.0058 Score=51.48 Aligned_cols=21 Identities=29% Similarity=0.569 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 044030 72 LAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~ 92 (449)
++|+|.+|+|||||++.+.+-
T Consensus 5 i~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999987763
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.02 E-value=0.0048 Score=51.87 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 044030 71 LLAIMGPSGSGKTTLLDALAG 91 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G 91 (449)
-++|+|++|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999765
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.99 E-value=0.0055 Score=51.94 Aligned_cols=21 Identities=33% Similarity=0.615 Sum_probs=18.5
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 044030 72 LAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~ 92 (449)
++|+|++|+|||||++.+.+-
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 779999999999999987653
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.91 E-value=0.0054 Score=51.78 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 044030 71 LLAIMGPSGSGKTTLLDALAG 91 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G 91 (449)
-++|+|.+|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 388999999999999997765
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.87 E-value=0.0068 Score=51.12 Aligned_cols=22 Identities=27% Similarity=0.561 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 044030 72 LAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
++|+|++|+|||||++.+.+..
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEECCCCcCHHHHHHHHhCCc
Confidence 6899999999999999998864
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.85 E-value=0.0056 Score=51.68 Aligned_cols=21 Identities=29% Similarity=0.602 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 044030 72 LAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~ 92 (449)
++|+|++|+|||||++.+++-
T Consensus 8 i~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988864
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.84 E-value=0.0065 Score=51.01 Aligned_cols=21 Identities=24% Similarity=0.514 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 044030 72 LAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~ 92 (449)
++|+|++|+|||||++.+.+-
T Consensus 6 i~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 6 VVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988774
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.82 E-value=0.006 Score=55.39 Aligned_cols=23 Identities=35% Similarity=0.471 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-+.+.||+|+|||+|.++|+...
T Consensus 42 ~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhhcc
Confidence 46799999999999999999753
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.82 E-value=0.0078 Score=50.92 Aligned_cols=20 Identities=25% Similarity=0.645 Sum_probs=17.9
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 044030 72 LAIMGPSGSGKTTLLDALAG 91 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G 91 (449)
++++|++|+|||||++.+.+
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999987765
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.80 E-value=0.0036 Score=58.38 Aligned_cols=23 Identities=22% Similarity=0.548 Sum_probs=18.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
++||.|+|||||||+.+.|...+
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~ 28 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIF 28 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 79999999999999999988755
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=94.76 E-value=0.0041 Score=53.10 Aligned_cols=20 Identities=45% Similarity=0.640 Sum_probs=18.2
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 044030 72 LAIMGPSGSGKTTLLDALAG 91 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G 91 (449)
++++|++|+|||||++.+.+
T Consensus 20 I~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 20 ILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEETTSSHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 67999999999999998865
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.75 E-value=0.0069 Score=51.76 Aligned_cols=20 Identities=40% Similarity=0.743 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 044030 72 LAIMGPSGSGKTTLLDALAG 91 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G 91 (449)
++++|.+|+|||||++.+.+
T Consensus 5 v~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998775
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.73 E-value=0.0072 Score=50.48 Aligned_cols=20 Identities=30% Similarity=0.488 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 044030 72 LAIMGPSGSGKTTLLDALAG 91 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G 91 (449)
++++|..|+|||||++.+.+
T Consensus 5 v~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998875
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=94.73 E-value=0.0079 Score=52.85 Aligned_cols=21 Identities=43% Similarity=0.710 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 044030 71 LLAIMGPSGSGKTTLLDALAG 91 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G 91 (449)
++||.|+.||||||..+++..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 789999999999999999864
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.72 E-value=0.0065 Score=50.79 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=18.9
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 044030 72 LAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~ 92 (449)
++|+|..|+|||||++.+.+-
T Consensus 3 v~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988763
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.72 E-value=0.0077 Score=53.30 Aligned_cols=27 Identities=37% Similarity=0.479 Sum_probs=24.5
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCCC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRLG 94 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~~ 94 (449)
+|.+++|=|+-||||||+.+.|+-.+.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 688999999999999999999987664
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.71 E-value=0.0072 Score=50.73 Aligned_cols=21 Identities=33% Similarity=0.624 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 044030 72 LAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~ 92 (449)
++|+|.+|+|||||++.+.+-
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999888763
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=94.65 E-value=0.0087 Score=53.47 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=22.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCC
Q 044030 70 HLLAIMGPSGSGKTTLLDALAGRLG 94 (449)
Q Consensus 70 e~~~IlGpnGaGKSTLL~~l~G~~~ 94 (449)
..+.|.||+|+||||+++.|+..+.
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l~ 68 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELYK 68 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CceEEECCCCCCHHHHHHHHHHHHh
Confidence 4788999999999999999998764
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.63 E-value=0.0076 Score=51.19 Aligned_cols=21 Identities=38% Similarity=0.645 Sum_probs=18.9
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 044030 72 LAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~ 92 (449)
++++|..|+|||||++.+.+-
T Consensus 10 i~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988763
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=94.63 E-value=0.0098 Score=52.64 Aligned_cols=26 Identities=38% Similarity=0.386 Sum_probs=21.1
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
...+++++||+|+||||.+-=|+-.+
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA~~~ 34 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLALYY 34 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34688999999999999887777544
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=94.61 E-value=0.0093 Score=54.51 Aligned_cols=25 Identities=40% Similarity=0.663 Sum_probs=21.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 69 GHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 69 Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
..-+.+.||+|+|||+|.++|+..+
T Consensus 45 ~~~iLL~GppGtGKT~la~~iA~~~ 69 (256)
T d1lv7a_ 45 PKGVLMVGPPGTGKTLLAKAIAGEA 69 (256)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEeeCCCCCCccHHHHHHHHHc
Confidence 3457799999999999999999754
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.59 E-value=0.007 Score=52.34 Aligned_cols=21 Identities=38% Similarity=0.615 Sum_probs=18.9
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 044030 72 LAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~ 92 (449)
++|+|+.|+|||||++.+.+-
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHhhC
Confidence 889999999999999987753
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.58 E-value=0.0082 Score=50.41 Aligned_cols=20 Identities=20% Similarity=0.581 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 044030 72 LAIMGPSGSGKTTLLDALAG 91 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G 91 (449)
++|+|.+|+|||||++.+.+
T Consensus 7 i~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998875
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.57 E-value=0.0088 Score=50.62 Aligned_cols=22 Identities=36% Similarity=0.670 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 044030 72 LAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
++++|.+|+|||||++.+.+..
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEECCCCcCHHHHHHHHHhCc
Confidence 6899999999999999998854
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=94.55 E-value=0.018 Score=49.50 Aligned_cols=33 Identities=21% Similarity=0.150 Sum_probs=25.8
Q ss_pred eeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHc
Q 044030 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAG 91 (449)
Q Consensus 58 iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G 91 (449)
.++.....+ .|.-+.|.||||+|||||.-.+.-
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 455555555 788899999999999999877754
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.46 E-value=0.0079 Score=51.00 Aligned_cols=21 Identities=38% Similarity=0.468 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 044030 72 LAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~ 92 (449)
++|+|++|+|||||++.+.+-
T Consensus 5 ivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 5 LVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 679999999999999888764
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.41 E-value=0.0094 Score=50.00 Aligned_cols=20 Identities=25% Similarity=0.429 Sum_probs=18.1
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 044030 72 LAIMGPSGSGKTTLLDALAG 91 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G 91 (449)
++|+|.+|+|||||++.+.+
T Consensus 6 ivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998765
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=94.40 E-value=0.006 Score=51.61 Aligned_cols=21 Identities=33% Similarity=0.476 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 044030 72 LAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~ 92 (449)
+.++|++|+|||||++.+.+-
T Consensus 15 IvlvG~~~vGKTSli~rl~~~ 35 (173)
T d1e0sa_ 15 ILMLGLDAAGKTTILYKLKLG 35 (173)
T ss_dssp EEEEEETTSSHHHHHHHTTCC
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 679999999999999998753
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=94.38 E-value=0.0091 Score=54.24 Aligned_cols=22 Identities=45% Similarity=0.789 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 044030 72 LAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+.+.||+|+|||+|.++|+...
T Consensus 45 iLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEecCCCCChhHHHHHHHHHc
Confidence 6899999999999999999854
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.37 E-value=0.0086 Score=50.57 Aligned_cols=20 Identities=30% Similarity=0.679 Sum_probs=18.4
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 044030 72 LAIMGPSGSGKTTLLDALAG 91 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G 91 (449)
++++|..|+|||||++.+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998765
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.35 E-value=0.0098 Score=52.50 Aligned_cols=22 Identities=45% Similarity=0.588 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 044030 72 LAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+.+-||+|+||||+.++++..+
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l 60 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHEL 60 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHHH
Confidence 6789999999999999998643
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=94.33 E-value=0.0081 Score=53.43 Aligned_cols=25 Identities=36% Similarity=0.571 Sum_probs=19.9
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
+-.+++++||+|+||||.+==|+-.
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~ 34 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKM 34 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4458899999999999987556644
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=94.33 E-value=0.013 Score=49.59 Aligned_cols=28 Identities=25% Similarity=0.407 Sum_probs=25.2
Q ss_pred EecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 66 AKPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 66 i~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.++|.++++-|+=|||||||.|.++.-+
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~l 57 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCeEEEEecCCCccHHHHHHHHHhhc
Confidence 4689999999999999999999998654
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.27 E-value=0.011 Score=51.09 Aligned_cols=23 Identities=48% Similarity=0.833 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+++|-|+-||||||+++.|...+
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998765
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.24 E-value=0.0094 Score=54.62 Aligned_cols=26 Identities=38% Similarity=0.617 Sum_probs=22.3
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+..-+.|.||+|+|||+|.++|++.+
T Consensus 40 ~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 40 PSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcchhHHHHHHHHh
Confidence 34457899999999999999999865
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.24 E-value=0.011 Score=49.80 Aligned_cols=21 Identities=38% Similarity=0.651 Sum_probs=18.9
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 044030 72 LAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~ 92 (449)
++++|++|+|||||++-+.+-
T Consensus 5 i~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999988864
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.23 E-value=0.011 Score=49.74 Aligned_cols=21 Identities=19% Similarity=0.509 Sum_probs=18.2
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 044030 72 LAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~ 92 (449)
++|+|.+|+|||||++.+.+-
T Consensus 6 i~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 6 LVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999976653
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.20 E-value=0.011 Score=50.49 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
-++|+|.+|+|||||++.+.+-
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999887764
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.18 E-value=0.01 Score=50.22 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=18.2
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 044030 72 LAIMGPSGSGKTTLLDALAG 91 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G 91 (449)
++|+|.+|+|||||++-+.+
T Consensus 9 v~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 9 LVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999988765
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.14 E-value=0.0072 Score=51.10 Aligned_cols=20 Identities=35% Similarity=0.620 Sum_probs=17.6
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 044030 72 LAIMGPSGSGKTTLLDALAG 91 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G 91 (449)
++++|++|+|||||++.+++
T Consensus 6 i~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC-
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998765
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.13 E-value=0.011 Score=49.60 Aligned_cols=21 Identities=29% Similarity=0.501 Sum_probs=18.6
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 044030 72 LAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~ 92 (449)
++++|.+|+|||||++.+.+-
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 9 LVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999988853
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.13 E-value=0.0072 Score=51.13 Aligned_cols=21 Identities=38% Similarity=0.577 Sum_probs=8.5
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 044030 72 LAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~ 92 (449)
++|+|..|+|||||++.+++-
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEECCCCC------------
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999877763
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.09 E-value=0.011 Score=52.83 Aligned_cols=42 Identities=21% Similarity=0.233 Sum_probs=30.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCc
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPS 240 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~ 240 (449)
+.+++++||.-. |.......+.+.+.+... ...+|++++++.
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~~----~~~~Il~tn~~~ 172 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYSK----NIRLIMVCDSMS 172 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHSTT----TEEEEEEESCSC
T ss_pred CceEEEeccccc-cccccchhhhcccccccc----cccceeeecccc
Confidence 567999999854 777777777777765431 336789999875
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.06 E-value=0.011 Score=53.73 Aligned_cols=22 Identities=36% Similarity=0.687 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 044030 72 LAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+.+.||+|+|||+|.++++...
T Consensus 41 iLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEecCCCCCchHHHHHHHHHh
Confidence 6789999999999999999854
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=94.04 E-value=0.01 Score=52.59 Aligned_cols=24 Identities=33% Similarity=0.606 Sum_probs=19.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 044030 70 HLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 70 e~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.+++++||+|+||||.+-=|+-.+
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~ 33 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQF 33 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999886666544
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.03 E-value=0.012 Score=49.39 Aligned_cols=20 Identities=40% Similarity=0.620 Sum_probs=18.0
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 044030 72 LAIMGPSGSGKTTLLDALAG 91 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G 91 (449)
++|+|+.|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999997654
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=94.03 E-value=0.0087 Score=53.82 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
++.|.||+|+||||+++.++..+
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 45667999999999999999764
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.00 E-value=0.013 Score=51.72 Aligned_cols=41 Identities=20% Similarity=0.226 Sum_probs=28.7
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCc
Q 044030 195 PKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPS 240 (449)
Q Consensus 195 P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~ 240 (449)
.+++++||. ..+.......+...|....+ ...++++++++.
T Consensus 100 ~kiiiiDe~-d~~~~~~~~~Ll~~le~~~~----~~~~~~~~~~~~ 140 (227)
T d1sxjc2 100 FKLIILDEA-DAMTNAAQNALRRVIERYTK----NTRFCVLANYAH 140 (227)
T ss_dssp CEEEEETTG-GGSCHHHHHHHHHHHHHTTT----TEEEEEEESCGG
T ss_pred eEEEEEecc-ccchhhHHHHHHHHhhhccc----ceeeccccCcHH
Confidence 469999996 56778888888888876542 235566666643
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.97 E-value=0.013 Score=49.35 Aligned_cols=20 Identities=30% Similarity=0.501 Sum_probs=18.0
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 044030 72 LAIMGPSGSGKTTLLDALAG 91 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G 91 (449)
++++|.+|+|||||++.+.+
T Consensus 7 i~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67899999999999998776
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.96 E-value=0.014 Score=54.17 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
++||-|+.|||||||-+.|.-.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHH
Confidence 7899999999999999887643
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=93.91 E-value=0.0071 Score=57.04 Aligned_cols=26 Identities=35% Similarity=0.477 Sum_probs=23.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCC
Q 044030 70 HLLAIMGPSGSGKTTLLDALAGRLGS 95 (449)
Q Consensus 70 e~~~IlGpnGaGKSTLL~~l~G~~~~ 95 (449)
.-+.|.||.|+|||||.+.+++++++
T Consensus 29 h~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CeEEEECCCCccHHHHHHHHHHhCCC
Confidence 45789999999999999999998865
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=93.84 E-value=0.015 Score=50.32 Aligned_cols=22 Identities=41% Similarity=0.617 Sum_probs=20.4
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 044030 72 LAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+||+|.-.||||||++.|+|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEeccCCcHHHHHHHHHhhh
Confidence 7999999999999999999864
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=93.84 E-value=0.014 Score=49.09 Aligned_cols=21 Identities=24% Similarity=0.377 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 044030 71 LLAIMGPSGSGKTTLLDALAG 91 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G 91 (449)
-++|+|..|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998765
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=93.82 E-value=0.028 Score=48.30 Aligned_cols=26 Identities=31% Similarity=0.262 Sum_probs=21.7
Q ss_pred EecCeEEEEECCCCCcHHHHHHHHHc
Q 044030 66 AKPGHLLAIMGPSGSGKTTLLDALAG 91 (449)
Q Consensus 66 i~~Ge~~~IlGpnGaGKSTLL~~l~G 91 (449)
.-.|.-+.|.|+||+|||||.-.+..
T Consensus 11 ~~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 11 DIYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred EECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 44677899999999999999877664
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.75 E-value=0.015 Score=49.56 Aligned_cols=22 Identities=27% Similarity=0.523 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
-++++|++|+|||||++.+.+-
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999977664
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.64 E-value=0.014 Score=53.98 Aligned_cols=33 Identities=36% Similarity=0.503 Sum_probs=25.9
Q ss_pred eeeeeeEEEecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 58 ILEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 58 iL~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+|+.++-- =-+++|+||-++|||||||.|.|..
T Consensus 24 ~l~~~~~~---v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 24 ILSAITQP---MVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp HHHTCCSB---EEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHcCCCC---EEEEEEECCCCCCHHHHHHHHcCCC
Confidence 45554332 2489999999999999999999964
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.60 E-value=0.015 Score=54.34 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 044030 72 LAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+||+|-+-+|||||+|+|+|-.
T Consensus 3 v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC--
T ss_pred EeEECCCCCCHHHHHHHHHCCC
Confidence 7999999999999999999853
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.58 E-value=0.016 Score=49.48 Aligned_cols=29 Identities=24% Similarity=0.426 Sum_probs=21.4
Q ss_pred EEEECCCCCcHHHHHHHHHcCCCCCCCcee
Q 044030 72 LAIMGPSGSGKTTLLDALAGRLGSDTRQTG 101 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~~~~~~~~~G 101 (449)
+.|+|.+|+|||||++-+.-. ....++.|
T Consensus 5 ivllG~~~vGKTsll~r~~f~-~~~~pTiG 33 (200)
T d1zcba2 5 ILLLGAGESGKSTFLKQMRII-HGQDPTKG 33 (200)
T ss_dssp EEEECSTTSSHHHHHHHHHHH-HSCCCCSS
T ss_pred EEEECCCCCCHHHHHHHHhcC-CCCCCeee
Confidence 679999999999999998432 22234556
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=93.58 E-value=0.018 Score=55.89 Aligned_cols=52 Identities=12% Similarity=0.260 Sum_probs=35.4
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeE
Q 044030 187 ISIEILTRPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNL 250 (449)
Q Consensus 187 ia~aL~~~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v 250 (449)
+..+|=++|++++..|.. |+.++...+ +.+ ..|+ .|+.+.|-.+ +....+|+
T Consensus 220 l~~~lR~dPDvi~igEiR---d~~ta~~a~----~aa-~tGh--lV~tTlHa~~--a~~~~~Rl 271 (401)
T d1p9ra_ 220 LRAILRQDPDVVMVGEIR---DLETAQIAV----QAS-LTGH--LVMSTLHTNT--AVGAVTRL 271 (401)
T ss_dssp HHHHGGGCCSEEEESCCC---SHHHHHHHH----HHH-HTTC--EEEEEECCSS--SHHHHHHH
T ss_pred HHHHHhhcCCEEEecCcC---ChHHHHHHH----HHH-hcCC--eEEEEeccCc--hHhhhhhh
Confidence 445666799999999987 555555444 344 3455 9999999853 45555654
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.49 E-value=0.016 Score=49.55 Aligned_cols=20 Identities=35% Similarity=0.498 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 044030 72 LAIMGPSGSGKTTLLDALAG 91 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G 91 (449)
++|+|.+|+|||||++.+..
T Consensus 12 i~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhh
Confidence 88999999999999988765
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.43 E-value=0.018 Score=48.10 Aligned_cols=21 Identities=29% Similarity=0.550 Sum_probs=18.5
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 044030 72 LAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~ 92 (449)
++|+|.+|+|||||++-+.+-
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999987653
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=93.38 E-value=0.016 Score=53.84 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
-+||+|.+.||||||+|+|++-
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 3899999999999999999975
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.17 E-value=0.021 Score=50.41 Aligned_cols=20 Identities=30% Similarity=0.597 Sum_probs=17.7
Q ss_pred EEEEECCCCCcHHHHHHHHH
Q 044030 71 LLAIMGPSGSGKTTLLDALA 90 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~ 90 (449)
-+.|+|.+|+|||||++-+.
T Consensus 8 KilllG~~~vGKTsll~~~~ 27 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMR 27 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999998874
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.17 E-value=0.019 Score=49.28 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 044030 72 LAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~ 92 (449)
++++|++|+|||||++.+.+-
T Consensus 6 vvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 6 CVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999877653
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=93.12 E-value=0.038 Score=47.09 Aligned_cols=32 Identities=28% Similarity=0.187 Sum_probs=24.4
Q ss_pred eeeeeEEEecCeEEEEECCCCCcHHHHHHHHHc
Q 044030 59 LEDLTGYAKPGHLLAIMGPSGSGKTTLLDALAG 91 (449)
Q Consensus 59 L~~vs~~i~~Ge~~~IlGpnGaGKSTLL~~l~G 91 (449)
|+. ++-.-.|.-+.|.|+||+|||||.-.+.-
T Consensus 6 ~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 6 LHG-VLVDVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EES-EEEEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred EEE-EEEEECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 444 44455788899999999999999866654
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=93.11 E-value=0.021 Score=52.94 Aligned_cols=29 Identities=31% Similarity=0.379 Sum_probs=26.0
Q ss_pred EEEecCeEEEEECCCCCcHHHHHHHHHcC
Q 044030 64 GYAKPGHLLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 64 ~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
+.|-+|+-.+|+|++|+|||||+..|+.-
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~~ 66 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQS 66 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHHH
T ss_pred ccccCCCeeeEeCCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999988863
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=93.06 E-value=0.029 Score=51.25 Aligned_cols=34 Identities=38% Similarity=0.489 Sum_probs=27.1
Q ss_pred eeee-ee-EEEecCeEEEEECCCCCcHHHHHHHHHc
Q 044030 58 ILED-LT-GYAKPGHLLAIMGPSGSGKTTLLDALAG 91 (449)
Q Consensus 58 iL~~-vs-~~i~~Ge~~~IlGpnGaGKSTLL~~l~G 91 (449)
.|+- +. +=+++|.++-|.||+|||||||.-.++.
T Consensus 41 ~lD~~Lg~GGi~~g~itei~G~~gsGKTtl~l~~~~ 76 (263)
T d1u94a1 41 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 76 (263)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHhcCCCccCceEEEEecCCCcHHHHHHHHHHH
Confidence 4443 32 6899999999999999999999755554
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=92.97 E-value=0.021 Score=52.85 Aligned_cols=23 Identities=30% Similarity=0.681 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.++++|.-.||||||+|+|+|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999964
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.90 E-value=0.023 Score=48.28 Aligned_cols=20 Identities=40% Similarity=0.659 Sum_probs=17.3
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 044030 72 LAIMGPSGSGKTTLLDALAG 91 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G 91 (449)
++++|.+|+|||||++.+..
T Consensus 5 ivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 5 IVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999976654
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.81 E-value=0.022 Score=52.40 Aligned_cols=23 Identities=30% Similarity=0.658 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.++++|.-.||||||+|+|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999964
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=92.69 E-value=0.021 Score=56.26 Aligned_cols=23 Identities=35% Similarity=0.625 Sum_probs=21.0
Q ss_pred EEEECCCCCcHHHHHHHHHcCCC
Q 044030 72 LAIMGPSGSGKTTLLDALAGRLG 94 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~~~ 94 (449)
+.++||+|+|||-|.+.||+.+.
T Consensus 52 ILliGPTGvGKTlLAr~LAk~l~ 74 (443)
T d1g41a_ 52 ILMIGPTGVGKTEIARRLAKLAN 74 (443)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 67899999999999999999763
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=92.64 E-value=0.032 Score=52.28 Aligned_cols=26 Identities=35% Similarity=0.516 Sum_probs=22.3
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
|...+.++||+|+|||.|.+.|+-.+
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~l 76 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKAL 76 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCcchhHHHHHHHHhhc
Confidence 34468899999999999999999865
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=92.35 E-value=0.031 Score=48.91 Aligned_cols=20 Identities=40% Similarity=0.481 Sum_probs=18.6
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 044030 72 LAIMGPSGSGKTTLLDALAG 91 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G 91 (449)
+||+|..+||||||++.|.+
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHH
Confidence 79999999999999999964
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.34 E-value=0.031 Score=47.44 Aligned_cols=21 Identities=29% Similarity=0.494 Sum_probs=18.6
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 044030 72 LAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~ 92 (449)
+.|+|..|+|||||++.+..-
T Consensus 5 iv~lG~~~vGKTsll~r~~~~ 25 (200)
T d2bcjq2 5 LLLLGTGESGKSTFIKQMRII 25 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999988654
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=92.27 E-value=0.038 Score=48.91 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=20.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 044030 70 HLLAIMGPSGSGKTTLLDALAG 91 (449)
Q Consensus 70 e~~~IlGpnGaGKSTLL~~l~G 91 (449)
.++||.|+-||||||..+.|..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999965
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=92.24 E-value=0.03 Score=53.65 Aligned_cols=28 Identities=36% Similarity=0.334 Sum_probs=25.7
Q ss_pred EecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 66 AKPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 66 i~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
++++..+.+.||+|+||||+.++|++.+
T Consensus 151 ~~~~~~~~~~g~~~~gk~~~~~~~~~~~ 178 (362)
T d1svma_ 151 IPKKRYWLFKGPIDSGKTTLAAALLELC 178 (362)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCcCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4788899999999999999999999976
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=92.08 E-value=0.034 Score=50.93 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
-+||+|-+-+|||||+++|++--
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~~ 26 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKAG 26 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999754
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=91.96 E-value=0.046 Score=47.50 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRLG 94 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~~ 94 (449)
-+||+|.-.||||||++.|+|...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhhc
Confidence 389999999999999999998653
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=91.88 E-value=0.032 Score=49.47 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~ 92 (449)
++.|.|.=||||||||+-+...
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 6889999999999999988764
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=91.70 E-value=0.038 Score=50.60 Aligned_cols=19 Identities=58% Similarity=0.866 Sum_probs=17.8
Q ss_pred EEEECCCCCcHHHHHHHHH
Q 044030 72 LAIMGPSGSGKTTLLDALA 90 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~ 90 (449)
+||+|+.|||||||..+|.
T Consensus 5 v~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 5 VALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEcCCCCcHHHHHHHHH
Confidence 7999999999999999994
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.42 E-value=0.047 Score=46.00 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 044030 72 LAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+.++|..|+|||||++-+..-.
T Consensus 5 ivllG~~~vGKTsl~~r~~~~~ 26 (195)
T d1svsa1 5 LLLLGAGESGKSTIVKQMKIIH 26 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhhCC
Confidence 6899999999999999876543
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.34 E-value=0.051 Score=47.93 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 044030 70 HLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 70 e~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.+++|=|+-||||||+++.|+-.+
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l 26 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH
Confidence 378899999999999999998755
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=91.34 E-value=0.053 Score=50.94 Aligned_cols=29 Identities=34% Similarity=0.513 Sum_probs=23.3
Q ss_pred EEEecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 64 GYAKPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 64 ~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
...++| ++.+.||+|+|||.|.+.|++..
T Consensus 119 ~~~~~g-~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 119 HRYASG-MVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp EEEESE-EEEEECSSSSCHHHHHHHHHHHH
T ss_pred cccCCc-eEEEECCCCccHHHHHHHHHHHh
Confidence 444444 66778999999999999999864
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=90.96 E-value=0.051 Score=49.96 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=17.6
Q ss_pred EEEECCCCCcHHHHHHHHH
Q 044030 72 LAIMGPSGSGKTTLLDALA 90 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~ 90 (449)
+||+|+.|||||||...|.
T Consensus 9 i~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 9 IGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEECTTSCHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHH
Confidence 7999999999999999983
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.84 E-value=0.061 Score=49.24 Aligned_cols=27 Identities=37% Similarity=0.519 Sum_probs=23.4
Q ss_pred EEEecCeEEEEECCCCCcHHHHHHHHH
Q 044030 64 GYAKPGHLLAIMGPSGSGKTTLLDALA 90 (449)
Q Consensus 64 ~~i~~Ge~~~IlGpnGaGKSTLL~~l~ 90 (449)
+=++.|.++-|.||+|+|||||.-.++
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~ 81 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAV 81 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHH
T ss_pred CCcccceeEEEecCCCcHHHHHHHHHH
Confidence 578999999999999999999964444
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=90.67 E-value=0.061 Score=47.25 Aligned_cols=48 Identities=15% Similarity=0.041 Sum_probs=35.9
Q ss_pred HHhCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcH
Q 044030 191 ILTRPKLLFLDEPTSG-LDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSS 241 (449)
Q Consensus 191 L~~~P~llllDEPtsg-LD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~ 241 (449)
.+.+.+++++|+-=.= =+...+..+..++..+.+ .|+ .+|+++..+..
T Consensus 94 ~~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~-~~~--~iiits~~~p~ 142 (213)
T d1l8qa2 94 MYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYL-LEK--QIILASDRHPQ 142 (213)
T ss_dssp HHHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHH-TTC--EEEEEESSCGG
T ss_pred HHhhccchhhhhhhhhcCchHHHHHHHHHHHHHhh-ccc--eEEEecCCcch
Confidence 3568899999987432 357778889999998874 444 88888888654
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=89.90 E-value=0.067 Score=51.47 Aligned_cols=21 Identities=43% Similarity=0.703 Sum_probs=17.6
Q ss_pred eEEEEECCCCCcHHHHHHHHH
Q 044030 70 HLLAIMGPSGSGKTTLLDALA 90 (449)
Q Consensus 70 e~~~IlGpnGaGKSTLL~~l~ 90 (449)
..+.|+|++|||||++++.|.
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li 71 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELA 71 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEEeCCCCcHHHHHHHHH
Confidence 458999999999999987544
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.79 E-value=0.099 Score=47.88 Aligned_cols=28 Identities=29% Similarity=0.434 Sum_probs=24.8
Q ss_pred EEEecCeEEEEECCCCCcHHHHHHHHHc
Q 044030 64 GYAKPGHLLAIMGPSGSGKTTLLDALAG 91 (449)
Q Consensus 64 ~~i~~Ge~~~IlGpnGaGKSTLL~~l~G 91 (449)
+.+-+|+-.+|+|++|+|||||+..++-
T Consensus 63 ~pigkGQr~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 63 APYAKGGKIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred ccccCCCEEEeeCCCCCCHHHHHHHHHH
Confidence 5788999999999999999999777753
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=89.54 E-value=0.085 Score=45.74 Aligned_cols=21 Identities=33% Similarity=0.447 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 044030 72 LAIMGPSGSGKTTLLDALAGR 92 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~ 92 (449)
+||+|.-++|||||++.|.+.
T Consensus 6 i~iiGHvd~GKSTL~~~l~~~ 26 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITKI 26 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHH
Confidence 799999999999999999874
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=89.35 E-value=0.095 Score=45.63 Aligned_cols=42 Identities=12% Similarity=0.234 Sum_probs=29.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCc
Q 044030 194 RPKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPS 240 (449)
Q Consensus 194 ~P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~ 240 (449)
+.+++++||. -.|...++..+++.|.+..+ +..+|++++++.
T Consensus 108 ~~kviIide~-d~l~~~a~n~Llk~lEep~~----~~~fIl~t~~~~ 149 (207)
T d1a5ta2 108 GAKVVWVTDA-ALLTDAAANALLKTLEEPPA----ETWFFLATREPE 149 (207)
T ss_dssp SCEEEEESCG-GGBCHHHHHHHHHHHTSCCT----TEEEEEEESCGG
T ss_pred ccceEEechh-hhhhhhhhHHHHHHHHhhcc----cceeeeeecChh
Confidence 3779999975 45666777777777765432 336788898864
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=89.11 E-value=0.097 Score=46.40 Aligned_cols=51 Identities=10% Similarity=0.135 Sum_probs=34.0
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCcHHHHhhcCeE
Q 044030 195 PKLLFLDEPTSGLDSAASYYVMSRIAKLGQRDGIGRTIIASIHQPSSEVFQLFHNL 250 (449)
Q Consensus 195 P~llllDEPtsgLD~~~~~~i~~~l~~l~~~~g~g~tii~~tH~~~~~i~~~~D~v 250 (449)
.+++++||.= .|...++..+.+.+.+... +..+|++++++..-...+-.|.
T Consensus 116 ~kviiIde~d-~l~~~~q~~Llk~lE~~~~----~~~~il~tn~~~~i~~~i~SRc 166 (239)
T d1njfa_ 116 FKVYLIDEVH-MLSRHSFNALLKTLEEPPE----HVKFLLATTDPQKLPVTILSRC 166 (239)
T ss_dssp SEEEEEETGG-GSCHHHHHHHHHHHHSCCT----TEEEEEEESCGGGSCHHHHTTS
T ss_pred CEEEEEECcc-cCCHHHHHHHHHHHhcCCC----CeEEEEEcCCccccChhHhhhh
Confidence 4699999984 4888887777777764321 3488999988654333443443
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=88.29 E-value=0.12 Score=47.13 Aligned_cols=23 Identities=39% Similarity=0.572 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
=..|+||+|.|||+++.-++-++
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri 63 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRI 63 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEECCCCCcHHHHHHHHHHHH
Confidence 35799999999999999999865
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=88.27 E-value=0.098 Score=47.38 Aligned_cols=20 Identities=30% Similarity=0.557 Sum_probs=15.0
Q ss_pred EEEEECCCCCcHHHHH-HHHH
Q 044030 71 LLAIMGPSGSGKTTLL-DALA 90 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL-~~l~ 90 (449)
-+.|+|+.||||||.| ..++
T Consensus 16 ~~lI~g~aGTGKTt~l~~rv~ 36 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVITNKIA 36 (306)
T ss_dssp EEEECCCTTSCHHHHHHHHHH
T ss_pred CEEEEeeCCccHHHHHHHHHH
Confidence 3679999999999754 4443
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=87.95 E-value=0.091 Score=48.16 Aligned_cols=16 Identities=56% Similarity=0.740 Sum_probs=13.5
Q ss_pred EEEEECCCCCcHHHHH
Q 044030 71 LLAIMGPSGSGKTTLL 86 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL 86 (449)
.+.|.|+.||||||.|
T Consensus 26 ~~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 26 PLLIMAGAGSGKTRVL 41 (318)
T ss_dssp CEEEEECTTSCHHHHH
T ss_pred CEEEEecCCccHHHHH
Confidence 3678899999999765
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=87.87 E-value=0.13 Score=47.81 Aligned_cols=26 Identities=42% Similarity=0.671 Sum_probs=22.0
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
|.-.+.++||+|+|||.|.+.|+-.+
T Consensus 52 p~~~~lf~Gp~G~GKt~lak~la~~l 77 (315)
T d1qvra3 52 PIGSFLFLGPTGVGKTELAKTLAATL 77 (315)
T ss_dssp CSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCcchHHHHHHHHHHHh
Confidence 34467899999999999999999865
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=87.52 E-value=0.15 Score=44.18 Aligned_cols=22 Identities=36% Similarity=0.739 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 044030 72 LAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
..|+||+|.|||++..-|+-++
T Consensus 46 ~lLvG~pGVGKTalv~~LA~ri 67 (195)
T d1jbka_ 46 PVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEecCCcccHHHHHHHHHHH
Confidence 5799999999999999999765
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=86.40 E-value=0.17 Score=48.09 Aligned_cols=26 Identities=38% Similarity=0.724 Sum_probs=21.1
Q ss_pred ecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 67 KPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+++. +.++||+|+|||-|.|.|+-..
T Consensus 67 p~~n-iLfiGPTGvGKTElAk~LA~~~ 92 (364)
T d1um8a_ 67 SKSN-ILLIGPTGSGKTLMAQTLAKHL 92 (364)
T ss_dssp CCCC-EEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcc-eeeeCCCCccHHHHHHHHHhhc
Confidence 4444 5567999999999999999764
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=85.85 E-value=0.16 Score=47.06 Aligned_cols=20 Identities=45% Similarity=0.704 Sum_probs=17.5
Q ss_pred ecCeEEEEECCCCCcHHHHH
Q 044030 67 KPGHLLAIMGPSGSGKTTLL 86 (449)
Q Consensus 67 ~~Ge~~~IlGpnGaGKSTLL 86 (449)
+.|++..+.|-||+|||||-
T Consensus 12 ~~~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 12 EKGDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp TTSCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEEccCCCCcccce
Confidence 36889999999999999964
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=85.49 E-value=0.19 Score=44.06 Aligned_cols=19 Identities=37% Similarity=0.616 Sum_probs=17.6
Q ss_pred EEEECCCCCcHHHHHHHHH
Q 044030 72 LAIMGPSGSGKTTLLDALA 90 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~ 90 (449)
+||+|.-++|||||+..|.
T Consensus 6 i~viGHVd~GKTTL~~~Ll 24 (224)
T d1jnya3 6 LIVIGHVDHGKSTLVGRLL 24 (224)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEecCCCCHHHHHHHHH
Confidence 7899999999999999884
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=85.27 E-value=0.17 Score=47.16 Aligned_cols=18 Identities=50% Similarity=0.800 Sum_probs=16.5
Q ss_pred cCeEEEEECCCCCcHHHH
Q 044030 68 PGHLLAIMGPSGSGKTTL 85 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTL 85 (449)
.|++..+.|.||+|||||
T Consensus 13 ~~~valffGLSGTGKTTL 30 (318)
T d1j3ba1 13 EGDVAVFFGLSGTGKTTL 30 (318)
T ss_dssp TCCEEEEEECTTSCHHHH
T ss_pred CCCEEEEEccCCCCcccc
Confidence 478899999999999996
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=84.96 E-value=0.25 Score=46.81 Aligned_cols=21 Identities=33% Similarity=0.496 Sum_probs=17.9
Q ss_pred cCeEEEEECCCCCcHHHHHHH
Q 044030 68 PGHLLAIMGPSGSGKTTLLDA 88 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~ 88 (449)
.+.++.|.||.|+||||++..
T Consensus 162 ~~~~~vI~G~pGTGKTt~i~~ 182 (359)
T d1w36d1 162 TRRISVISGGPGTGKTTTVAK 182 (359)
T ss_dssp TBSEEEEECCTTSTHHHHHHH
T ss_pred cCCeEEEEcCCCCCceehHHH
Confidence 367999999999999998743
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=84.06 E-value=0.33 Score=39.46 Aligned_cols=23 Identities=39% Similarity=0.531 Sum_probs=19.7
Q ss_pred CeEEEEECCCCCcHHH-HHHHHHc
Q 044030 69 GHLLAIMGPSGSGKTT-LLDALAG 91 (449)
Q Consensus 69 Ge~~~IlGpnGaGKST-LL~~l~G 91 (449)
|.+..|+||=.||||| |++.+-.
T Consensus 2 G~L~~i~GpMfsGKTteLi~~~~~ 25 (139)
T d2b8ta1 2 GWIEFITGPMFAGKTAELIRRLHR 25 (139)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHH
T ss_pred cEEEEEEccccCHHHHHHHHHHHH
Confidence 7889999999999999 7777644
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=83.98 E-value=0.26 Score=43.32 Aligned_cols=20 Identities=30% Similarity=0.436 Sum_probs=18.4
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 044030 72 LAIMGPSGSGKTTLLDALAG 91 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G 91 (449)
++++|.-.+|||||++.|..
T Consensus 12 i~viGHVd~GKSTL~~~Ll~ 31 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLH 31 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 78999999999999999964
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=83.76 E-value=0.31 Score=44.08 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=22.7
Q ss_pred cCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 68 PGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
.+-.++|+|-+-+|||||+|.|.|..
T Consensus 111 ~~~~v~vvG~PNvGKSsliN~L~~~~ 136 (273)
T d1puja_ 111 RAIRALIIGIPNVGKSTLINRLAKKN 136 (273)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CceEEEEEecCccchhhhhhhhhccc
Confidence 34458999999999999999999965
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=83.28 E-value=0.26 Score=44.66 Aligned_cols=30 Identities=23% Similarity=0.400 Sum_probs=25.8
Q ss_pred EEEecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 64 GYAKPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 64 ~~i~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
...++--++.|.||.++|||||+++|+..+
T Consensus 99 ~~~~k~n~~~l~G~~~tGKS~f~~~i~~~l 128 (267)
T d1u0ja_ 99 KKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp TCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCccEEEEEEcCCCCCHHHHHHHHHHHh
Confidence 344666789999999999999999999876
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=83.19 E-value=0.16 Score=39.88 Aligned_cols=21 Identities=29% Similarity=0.282 Sum_probs=17.5
Q ss_pred EecCeEEEEECCCCCcHHHHH
Q 044030 66 AKPGHLLAIMGPSGSGKTTLL 86 (449)
Q Consensus 66 i~~Ge~~~IlGpnGaGKSTLL 86 (449)
+++|+.+.|.+|.|||||+..
T Consensus 4 l~~~~~~il~~~tGsGKT~~~ 24 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRF 24 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTH
T ss_pred HHcCCcEEEEcCCCCChhHHH
Confidence 367899999999999999543
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=82.94 E-value=0.26 Score=45.80 Aligned_cols=19 Identities=47% Similarity=0.725 Sum_probs=17.2
Q ss_pred cCeEEEEECCCCCcHHHHH
Q 044030 68 PGHLLAIMGPSGSGKTTLL 86 (449)
Q Consensus 68 ~Ge~~~IlGpnGaGKSTLL 86 (449)
.|++..+.|-||+|||||-
T Consensus 13 ~gd~alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 13 QGDVTVFFGLSGTGKTTLS 31 (323)
T ss_dssp TCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEEccCCCCcccce
Confidence 6788899999999999985
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=82.71 E-value=0.18 Score=46.37 Aligned_cols=28 Identities=21% Similarity=0.157 Sum_probs=24.0
Q ss_pred eEEEecCeEEEEECCCCCcHHHHHHHHH
Q 044030 63 TGYAKPGHLLAIMGPSGSGKTTLLDALA 90 (449)
Q Consensus 63 s~~i~~Ge~~~IlGpnGaGKSTLL~~l~ 90 (449)
=+.+-+|+..+|+|++|+|||||+.-++
T Consensus 62 l~pig~GQr~~If~~~g~GKt~ll~~~~ 89 (285)
T d2jdia3 62 LVPIGRGQRELIIGDRQTGKTSIAIDTI 89 (285)
T ss_dssp HSCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred ccCccCCCEEEeecCCCCChHHHHHHHH
Confidence 3578899999999999999999976444
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=82.66 E-value=0.15 Score=46.67 Aligned_cols=27 Identities=22% Similarity=0.198 Sum_probs=23.7
Q ss_pred EEEecCeEEEEECCCCCcHHHHHHHHH
Q 044030 64 GYAKPGHLLAIMGPSGSGKTTLLDALA 90 (449)
Q Consensus 64 ~~i~~Ge~~~IlGpnGaGKSTLL~~l~ 90 (449)
+.+-+|+..+|+|++|+|||+|+..+.
T Consensus 62 ~pig~GQr~~Ifg~~g~GKt~l~~~~~ 88 (276)
T d1fx0a3 62 IPVGRGQRELIIGDRQTGKTAVATDTI 88 (276)
T ss_dssp SCCBTTCBCBEEESSSSSHHHHHHHHH
T ss_pred ccccCCceEeeccCCCCChHHHHHHHH
Confidence 478899999999999999999987544
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=82.34 E-value=0.3 Score=45.71 Aligned_cols=22 Identities=41% Similarity=0.451 Sum_probs=18.6
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 044030 72 LAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
++|=|+=||||||+++.|+..+
T Consensus 7 I~IEG~iGsGKTTl~~~La~~l 28 (329)
T d1e2ka_ 7 VYIDGPHGMGKTTTTQLLVALG 28 (329)
T ss_dssp EEECSCTTSSHHHHHHHHTC--
T ss_pred EEEECCcCCCHHHHHHHHHHHh
Confidence 7788999999999999998654
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.32 E-value=0.26 Score=46.34 Aligned_cols=23 Identities=35% Similarity=0.637 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHH---HcCCC
Q 044030 72 LAIMGPSGSGKTTLLDAL---AGRLG 94 (449)
Q Consensus 72 ~~IlGpnGaGKSTLL~~l---~G~~~ 94 (449)
+||+|.-|+|||||+..| +|...
T Consensus 20 I~iiGhvd~GKTTL~d~Ll~~~g~i~ 45 (341)
T d1n0ua2 20 MSVIAHVDHGKSTLTDSLVQRAGIIS 45 (341)
T ss_dssp EEEECCGGGTHHHHHHHHHHHHBCCB
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCcc
Confidence 899999999999999999 46543
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=81.79 E-value=0.51 Score=44.11 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 044030 71 LLAIMGPSGSGKTTLLDALAGRLG 94 (449)
Q Consensus 71 ~~~IlGpnGaGKSTLL~~l~G~~~ 94 (449)
.+.|=|+=|+||||+++.|+..+.
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~ 31 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAAS 31 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGG
T ss_pred EEEEECCccCCHHHHHHHHHHHhc
Confidence 356779999999999999998764
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=81.44 E-value=0.24 Score=43.07 Aligned_cols=28 Identities=18% Similarity=0.286 Sum_probs=25.0
Q ss_pred EecCeEEEEECCCCCcHHHHHHHHHcCC
Q 044030 66 AKPGHLLAIMGPSGSGKTTLLDALAGRL 93 (449)
Q Consensus 66 i~~Ge~~~IlGpnGaGKSTLL~~l~G~~ 93 (449)
+++-.++.|.||.++|||++..+|+..+
T Consensus 50 ~PKkn~i~~~GP~~TGKS~f~~sl~~~l 77 (205)
T d1tuea_ 50 TPKKNCLVFCGPANTGKSYFGMSFIHFI 77 (205)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCceEEEEECCCCccHHHHHHHHHHHh
Confidence 3677799999999999999999999876
|