Citrus Sinensis ID: 044082

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240---
Protein Sequence
MKCIEKERQALLMFKQGLVDDCGYLSSWGSDEGRKDCCKWSGVQCSNRTGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHcccccccccccccccccccccccccccEEEccccccEEEEEcccccccccccccccEEccccccccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHHcccccccEEEccccccccccccccccccccccccEEEccccccccccccHHHHccccccEEEcccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHccccccccccccccccccccccEEEEEEcccccEEEEEEccccEEEEcccccccEEccHHHHHcccccEEEEEEEccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEcccccccccccccHHHcccccccEEEcccccccccccccHHHHccccccEEEEcccccccccccHHHHHHHHHccEEEcccc
Coil and Loop (DISEMBL)
MKCIEKERQALLMFKQGlvddcgylsswgsdegrkdcckwsgvqcsnrtgHVIMLNLKykvdpvcpnrplrgninsSLLELQhlnyldlsvndflgnpipeFIGFFTKLRFLDLSLanfsgripyqlgnltnlqslnlgynslyvskFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYlasstlpsinrpslssmnsstsLALLDLsscglsnsaYHWLFKISSNLLALDLNSN
Flexible Loop (DISEMBL)
MKCIEKERQALLMFKQGLVDDCGYLSSWGSDEGRKDCCKWSGVQCSNRTGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASStlpsinrpslsSMNSSTSLALLDLSSCGLSNSAYHWLFKISSnllaldlnsn
Low Complexity Region (SEG)
MKCIEKERQALLMFKQGLVDDCGYLSSWGSDEGRKDCCKWSGVQCSNRTGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPslssmnsstslalldlssCGLSNSAYHWLFKIssnllaldlnsn
Disordered region (IsUnstruct)
********QALLMFKQGLVDDCGYLSSWGSDEGRKDCCKWSGVQCSNRTGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLAS*******************LALLDLSSCGLSNSAYHWLFKISSNLLAL*****
Disordered Region (DISOPRED)
*KCIEKERQALLMFKQGLVDDCGYLSSWGSDEGRKDCCKWSGVQCSNRTGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN
Disordered Region (DISEMBL)
MKCIEKERQALLMFKQGLVDDCGYLSSWGSDEGRKDCCKWSGVQCSNRTGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPS********SLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN
Disordered Region (DISPRO)
MKCIEKERQALLMFKQGLVDDCGYLSSWGSDEGRKDCCKWSGVQCSNRTGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLN**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKCIEKERQALLMFKQGLVDDCGYLSSWGSDEGRKDCCKWSGVQCSNRTGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	243	2.2.26 [Sep-21-2011]
Q8RY65	635	Protein NSP-INTERACTING K	no	no	0.633	0.242	0.371	3e-14
Q9C9H7	847	Receptor-like protein 12	no	no	0.740	0.212	0.331	2e-13
C0LGX3	993	LRR receptor-like serine/	no	no	0.728	0.178	0.311	5e-12
Q9LRT1	1016	Probably inactive leucine	no	no	0.502	0.120	0.388	9e-12
Q9LFS4	638	Protein NSP-INTERACTING K	no	no	0.790	0.300	0.333	9e-12
Q8VYT3	648	Probable LRR receptor-lik	no	no	0.617	0.231	0.358	2e-11
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.600	0.139	0.337	3e-11
Q9SCT4	836	Probably inactive leucine	no	no	0.613	0.178	0.318	5e-11
Q00874	372	DNA-damage-repair/tolerat	no	no	0.946	0.618	0.284	7e-11
C0LGF4	591	LRR receptor-like serine/	no	no	0.625	0.257	0.312	7e-11

>sp|Q8RY65|NIK2_ARATH Protein NSP-INTERACTING KINASE 2 OS=Arabidopsis thaliana GN=NIK2 PE=1 SV=1

 Score = 79.0 bits (193), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/167 (37%), Positives = 88/167 (52%), Gaps = 13/167 (7%)

Query: 2   KCIEKERQALLMFKQGLVDDCGYLSSWGSDEGRKDCCKWSGVQCSNRTGHVIMLNLKYKV 61
           K +  E  AL+  K  L D  G L +W  D+   D C W+ + CS+  G VI L      
Sbjct: 37  KGVNFEVVALIGIKSSLTDPHGVLMNW--DDTAVDPCSWNMITCSD--GFVIRLE----- 87

Query: 62  DPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSG 121
               P++ L G ++SS+  L +L  + L  N   GN IP  IG   KL+ LDLS  NF+G
Sbjct: 88  ---APSQNLSGTLSSSIGNLTNLQTVLLQNNYITGN-IPHEIGKLMKLKTLDLSTNNFTG 143

Query: 122 RIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLS 168
           +IP+ L    NLQ L +  NSL  +    L+++ +LT LDL + +LS
Sbjct: 144 QIPFTLSYSKNLQYLRVNNNSLTGTIPSSLANMTQLTFLDLSYNNLS 190

Involved in defense response to geminivirus infection (By similarity). Phosphorylates RPL10A in vitro.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score = 75.9 bits (185), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/196 (33%), Positives = 96/196 (48%), Gaps = 16/196 (8%)

Query: 3   CIEKERQALLMFKQGLVDDCGY--LSSW-GSDEGRKDCCKWSGVQCSNRTGHVIMLNLKY 59
           C + +R ALL F+     +  +  ++ W G      DCC W+GV C++++G VI L++  
Sbjct: 34  CRDDQRDALLEFRGEFPINASWHIMNQWRGPWNKSTDCCLWNGVTCNDKSGQVISLDI-- 91

Query: 60  KVDPVCPNRPLRG--NINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLA 117
                 PN  L      NSSL +LQ+L +LDL+  +  G  IP  +G  + L  ++L   
Sbjct: 92  ------PNTFLNNYLKTNSSLFKLQYLRHLDLTNCNLYGE-IPSSLGNLSHLTLVNLYFN 144

Query: 118 NFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVI 177
            F G IP  +GNL  L+ L L  N L       L +L++L  L+L    L         I
Sbjct: 145 KFVGEIPASIGNLNQLRHLILANNVLTGEIPSSLGNLSRLVNLELFSNRL--VGKIPDSI 202

Query: 178 TSLASLRDLYLASSTL 193
             L  LR+L LAS+ L
Sbjct: 203 GDLKQLRNLSLASNNL 218

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|C0LGX3|HSL2_ARATH LRR receptor-like serine/threonine-protein kinase HSL2 OS=Arabidopsis thaliana GN=HSL2 PE=2 SV=1

 Score = 71.6 bits (174), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 62/199 (31%), Positives = 89/199 (44%), Gaps = 22/199 (11%)

Query: 15  KQGLVDDCGYLSSWGSDEGRKDCCKWSGVQCSNRTGHVIMLN------------------ 56
           K  L D  G L  W      +  C W+G+ C  R G  + +                   
Sbjct: 36  KTRLFDPDGNLQDWVITGDNRSPCNWTGITCHIRKGSSLAVTTIDLSGYNISGGFPYGFC 95

Query: 57  -LKYKVDPVCPNRPLRGNINSSLLEL-QHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDL 114
            ++  ++       L G I+S+ L L   L  L L+ N+F G  +PEF   F KLR L+L
Sbjct: 96  RIRTLINITLSQNNLNGTIDSAPLSLCSKLQNLILNQNNFSGK-LPEFSPEFRKLRVLEL 154

Query: 115 SLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWL 174
               F+G IP   G LT LQ LNL  N L      +L +L +LT+LDL ++   + S   
Sbjct: 155 ESNLFTGEIPQSYGRLTALQVLNLNGNPLSGIVPAFLGYLTELTRLDLAYISF-DPSPIP 213

Query: 175 QVITSLASLRDLYLASSTL 193
             + +L++L DL L  S L
Sbjct: 214 STLGNLSNLTDLRLTHSNL 232

Receptor-like serine/threonine-kinase acting on substrates that controls floral organ abscission. Regulated by the 'INFLORESCENCE DEFICIENT IN ABSCISSION' (IDA) family of ligands.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LRT1|Y3804_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 OS=Arabidopsis thaliana GN=At3g28040 PE=2 SV=1

 Score = 70.5 bits (171), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 52/134 (38%), Positives = 70/134 (52%), Gaps = 12/134 (8%)

Query: 10  ALLMFKQGLVDDCGYLSSWGSDEGRKDCCKWSGVQCSNRTGHVIMLNLKYKVDPVCPNRP 69
            L++FK  L D   +L SW  D+     C WS V+C+ +T  VI L+L            
Sbjct: 39  GLIVFKSDLNDPFSHLESWTEDDNTP--CSWSYVKCNPKTSRVIELSLD--------GLA 88

Query: 70  LRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN 129
           L G IN  + +LQ L  L LS N+F GN     +     L+ LDLS  N SG+IP  LG+
Sbjct: 89  LTGKINRGIQKLQRLKVLSLSNNNFTGN--INALSNNNHLQKLDLSHNNLSGQIPSSLGS 146

Query: 130 LTNLQSLNLGYNSL 143
           +T+LQ L+L  NS 
Sbjct: 147 ITSLQHLDLTGNSF 160

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFS4|NIK1_ARATH Protein NSP-INTERACTING KINASE 1 OS=Arabidopsis thaliana GN=NIK1 PE=1 SV=1

 Score = 70.5 bits (171), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 68/204 (33%), Positives = 93/204 (45%), Gaps = 12/204 (5%)

Query: 2   KCIEKERQALLMFKQGLVDDCGYLSSWGSDEGRKDCCKWSGVQCSNRTGHVIMLNLKYKV 61
           K +  E QAL+  K  L D  G L +W  D    D C W+ V CS+    VI L      
Sbjct: 36  KGVNFEVQALMDIKASLHDPHGVLDNW--DRDAVDPCSWTMVTCSSEN-FVIGLG----- 87

Query: 62  DPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSG 121
               P++ L G ++ S+  L +L  + L  N+  G  IP  IG  T+L  LDLS   F G
Sbjct: 88  ---TPSQNLSGTLSPSITNLTNLRIVLLQNNNIKGK-IPAEIGRLTRLETLDLSDNFFHG 143

Query: 122 RIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLA 181
            IP+ +G L +LQ L L  NSL       LS++ +L  LDL + +LS         T   
Sbjct: 144 EIPFSVGYLQSLQYLRLNNNSLSGVFPLSLSNMTQLAFLDLSYNNLSGPVPRFAAKTFSI 203

Query: 182 SLRDLYLASSTLPSINRPSLSSMN 205
               L   + T P  N  +L  M+
Sbjct: 204 VGNPLICPTGTEPDCNGTTLIPMS 227

Involved in defense response to geminivirus infection via regulation of the nuclear trafficking of RPL10A. Phosphorylates RPL10A in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8VYT3|Y4052_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g30520 OS=Arabidopsis thaliana GN=At4g30520 PE=2 SV=1

 Score = 69.3 bits (168), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/162 (35%), Positives = 82/162 (50%), Gaps = 12/162 (7%)

Query: 7   ERQALLMFKQGLVDDCGYLSSWGSDEGRKDCCKWSGVQCSNRTGHVIMLNLKYKVDPVCP 66
           E +AL+  +  L D  G L++W  DE   D C W+ + CS     VI L          P
Sbjct: 37  EVEALISIRNNLHDPHGALNNW--DEFSVDPCSWAMITCSPDN-LVIGLG--------AP 85

Query: 67  NRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQ 126
           ++ L G ++ S+  L +L  + L  N+  G  IP  +GF  KL+ LDLS   FSG IP  
Sbjct: 86  SQSLSGGLSESIGNLTNLRQVSLQNNNISGK-IPPELGFLPKLQTLDLSNNRFSGDIPVS 144

Query: 127 LGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLS 168
           +  L++LQ L L  NSL       LS +  L+ LDL + +LS
Sbjct: 145 IDQLSSLQYLRLNNNSLSGPFPASLSQIPHLSFLDLSYNNLS 186

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score = 68.9 bits (167), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 77/160 (48%), Gaps = 14/160 (8%)

Query: 6   KERQALLMFKQGLVDDCG--YLSSWGSDEGRKDCCKWSGVQCSNRTGHVIMLNLKYKVDP 63
           +E  ALL +K    +      LSSW +      C  W GV CS   G +I LNL      
Sbjct: 49  EEANALLKWKSTFTNQTSSSKLSSWVNPNTSSFCTSWYGVACS--LGSIIRLNLT----- 101

Query: 64  VCPNRPLRGNINS-SLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGR 122
              N  + G         L +L ++DLS+N F G  I    G F+KL + DLS+    G 
Sbjct: 102 ---NTGIEGTFEDFPFSSLPNLTFVDLSMNRFSGT-ISPLWGRFSKLEYFDLSINQLVGE 157

Query: 123 IPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDL 162
           IP +LG+L+NL +L+L  N L  S    +  L K+T++ +
Sbjct: 158 IPPELGDLSNLDTLHLVENKLNGSIPSEIGRLTKVTEIAI 197

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SCT4|IMK2_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase IMK2 OS=Arabidopsis thaliana GN=IMK2 PE=1 SV=1

 Score = 68.2 bits (165), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 76/160 (47%), Gaps = 11/160 (6%)

Query: 9   QALLMFKQGLVDDCGYLSSWGSDEGRKDCCKWSGVQCSNRTGHVIMLNLKYKVDPVCPNR 68
           QAL   K  L+D  G L SW +    + C  W+G++C    G V+ + L +K        
Sbjct: 55  QALQAIKHELIDFTGVLKSWNNSASSQVCSGWAGIKC--LRGQVVAIQLPWKG------- 105

Query: 69  PLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLG 128
            L G I+  + +L  L  L L  N+ +   +P  +G+   LR + L     SG IP  LG
Sbjct: 106 -LGGTISEKIGQLGSLRKLSLH-NNVIAGSVPRSLGYLKSLRGVYLFNNRLSGSIPVSLG 163

Query: 129 NLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLS 168
           N   LQ+L+L  N L  +    L+   +L +L+L F  LS
Sbjct: 164 NCPLLQNLDLSSNQLTGAIPPSLTESTRLYRLNLSFNSLS 203

Arabidopsis thaliana (taxid: 3702)

>sp|Q00874|DR100_ARATH DNA-damage-repair/toleration protein DRT100 OS=Arabidopsis thaliana GN=DRT100 PE=2 SV=2

 Score = 67.8 bits (164), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 113/250 (45%), Gaps = 20/250 (8%)

Query: 3   CIEKERQALLMFKQGLVD-DCGYLSSWGSDEGRKDCCK-WSGVQCSNRTGHVIMLNLKYK 60
           C  K++ AL  FK  L + + G  ++W  +    DCCK W G+ C   +G V  ++L+ +
Sbjct: 27  CSPKDQTALNAFKSSLSEPNLGIFNTWSEN---TDCCKEWYGISCDPDSGRVTDISLRGE 83

Query: 61  VDPVCPNRPLR-----GNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLS 115
            +     +  R     G+I+ ++ +L  L  L L+    +   IP  I     LR LDL+
Sbjct: 84  SEDAIFQKAGRSGYMSGSIDPAVCDLTALTSLVLADWKGITGEIPPCITSLASLRILDLA 143

Query: 116 LANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEA--SDW 173
               +G IP ++G L+ L  LNL  N +       L+ L +L  L+L    ++    +D+
Sbjct: 144 GNKITGEIPAEIGKLSKLAVLNLAENQMSGEIPASLTSLIELKHLELTENGITGVIPADF 203

Query: 174 LQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISS 233
                SL  L  + L  + L      S+S M     LA LDLS   +      W+  +  
Sbjct: 204 ----GSLKMLSRVLLGRNELTGSIPESISGME---RLADLDLSKNHIEGPIPEWMGNMKV 256

Query: 234 -NLLALDLNS 242
            +LL LD NS
Sbjct: 257 LSLLNLDCNS 266

This protein is able to complement bacterial recA mutations, but its native function in the plant is not known.

Arabidopsis thaliana (taxid: 3702)

>sp|C0LGF4|FEI1_ARATH LRR receptor-like serine/threonine-protein kinase FEI 1 OS=Arabidopsis thaliana GN=FEI1 PE=1 SV=1

 Score = 67.8 bits (164), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 77/173 (44%), Gaps = 21/173 (12%)

Query: 2   KCIEKERQALLMFKQGLVDDCGYLSSWGSDEGRKDCCKWSGVQCSNRTGHVIMLNLKYK- 60
           + I  + +ALL F+  +     ++  W  ++   D C W+GV C  +T  VI LNL Y  
Sbjct: 28  QAISPDGEALLSFRNAVTRSDSFIHQWRPED--PDPCNWNGVTCDAKTKRVITLNLTYHK 85

Query: 61  -VDPVCP--------------NRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGF 105
            + P+ P              N  L G I ++L     L  + L  N F G PIP  +G 
Sbjct: 86  IMGPLPPDIGKLDHLRLLMLHNNALYGAIPTALGNCTALEEIHLQSNYFTG-PIPAEMGD 144

Query: 106 FTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLY--VSKFGWLSHLNK 156
              L+ LD+S    SG IP  LG L  L + N+  N L   +   G LS  +K
Sbjct: 145 LPGLQKLDMSSNTLSGPIPASLGQLKKLSNFNVSNNFLVGQIPSDGVLSGFSK 197

Involved in the signaling pathway that regulates cell wall function, including cellulose biosynthesis, likely via an 1-aminocyclopropane-1-carboxylic acid (ACC)-mediated signal (a precursor of ethylene).

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	243
225464712	1021	PREDICTED: receptor-like protein 12-like	0.991	0.236	0.586	3e-64
359490572	975	PREDICTED: probable LRR receptor-like se	0.983	0.245	0.534	7e-57
224105895	963	predicted protein [Populus trichocarpa]	0.995	0.251	0.512	3e-54
359490576	972	PREDICTED: LRR receptor-like serine/thre	0.888	0.222	0.504	1e-51
224125666	938	predicted protein [Populus trichocarpa]	0.967	0.250	0.530	4e-51
302143736	510	unnamed protein product [Vitis vinifera]	0.872	0.415	0.493	3e-49
302143738	329	unnamed protein product [Vitis vinifera]	0.864	0.638	0.491	5e-49
224105891	1036	predicted protein [Populus trichocarpa]	0.987	0.231	0.495	8e-49
224116866	994	predicted protein [Populus trichocarpa]	0.987	0.241	0.495	1e-48
356577875	1523	PREDICTED: uncharacterized protein LOC10	0.967	0.154	0.479	3e-48

>gi|225464712|ref|XP_002276171.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 143/244 (58%), Positives = 171/244 (70%), Gaps = 3/244 (1%)

Query: 3   CIEKERQALLMFKQGLVDDCGYLSSWGSDEGRKDCCKWSGVQCSNRTGHVIMLNLK-YKV 61
           C+EKERQALL FKQGLVDD G LSSWG++E R+DCCKW GVQCSNRT HVIML+L     
Sbjct: 52  CVEKERQALLDFKQGLVDDFGILSSWGNEEDRRDCCKWRGVQCSNRTSHVIMLDLHALPT 111

Query: 62  DPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSG 121
           D V   + LRG I+SSLLELQHLN+LDLS+NDF G+ +PEFIG F+KLR+L+LS A  +G
Sbjct: 112 DTVHKYQSLRGRISSSLLELQHLNHLDLSLNDFQGSYVPEFIGLFSKLRYLNLSEARLAG 171

Query: 122 RIPYQLGNLTNLQSLNLGYN-SLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSL 180
            IP  LGNL+NL  L+L  N  +      WLS L+ L  LDL  ++L +A  W  VI  L
Sbjct: 172 MIPSHLGNLSNLHFLDLSRNYGMSSETLEWLSRLSSLRHLDLSGLNLDKAIYWEHVINRL 231

Query: 181 ASLRDLYLASSTLPSINRPS-LSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALD 239
            SL DL L  S LP I  PS LS  NSS SL +LDLS   LS+S Y WLF +SS+L+ LD
Sbjct: 232 PSLTDLLLHDSALPQIITPSALSYTNSSKSLVVLDLSWNFLSSSVYPWLFNLSSSLVHLD 291

Query: 240 LNSN 243
           L+ N
Sbjct: 292 LSIN 295

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490572|ref|XP_003634116.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Vitis vinifera]

 Score =  226 bits (576), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 132/247 (53%), Positives = 168/247 (68%), Gaps = 8/247 (3%)

Query: 1   MKCIEKERQALLMFKQGLVDDCGYLSSWGSDEGRKDCCKWSGVQCSNRTGHVIMLNL--- 57
           + CIE+ERQALL FK+ + DD G LSSW S++ ++DCCKW GVQCS++TGH+  L+L   
Sbjct: 34  VGCIERERQALLKFKEDIADDFGILSSWRSEKNKRDCCKWRGVQCSSQTGHITSLDLSAY 93

Query: 58  KYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLA 117
           +YK +     R LRG I+ SLLELQ LN+LDLS NDF G  +PEFIG  TK+R+LDLS  
Sbjct: 94  EYKDE----FRHLRGKISPSLLELQQLNHLDLSGNDFEGRSMPEFIGSLTKMRYLDLSST 149

Query: 118 NFSGRIPYQLGNLTNLQSLNLGYNSLYVSK-FGWLSHLNKLTQLDLDFVDLSEASDWLQV 176
             +G +P+QLGNL+NL  L+L  NS   S+   WLS L+ LT L L+ ++LS+A  W   
Sbjct: 150 YLAGPLPHQLGNLSNLNFLDLSGNSNMSSENLDWLSRLSSLTHLGLNHLNLSKAIRWADA 209

Query: 177 ITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLL 236
           I  L SL DL L S  LPS   PSLS + SS SLA+LDLS   LS S Y WLF  +S+L+
Sbjct: 210 INKLPSLIDLLLKSCDLPSPITPSLSLVTSSMSLAVLDLSCNQLSTSIYPWLFNFNSSLV 269

Query: 237 ALDLNSN 243
            LDL+ N
Sbjct: 270 HLDLSYN 276

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105895|ref|XP_002333753.1| predicted protein [Populus trichocarpa] gi|222838401|gb|EEE76766.1| predicted protein [Populus trichocarpa]

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 125/244 (51%), Positives = 163/244 (66%), Gaps = 2/244 (0%)

Query: 1   MKCIEKERQALLMFKQGLVDDCGYLSSWGSDEGRKDCCKWSGVQCSNRTGHVIMLNLKYK 60
           + CIE+ERQALL FK+ ++D+ G LSSWG +E ++DCCKW GV C N TGHV  LNL   
Sbjct: 30  IGCIERERQALLKFKEDIIDEDGVLSSWGGEEEKRDCCKWRGVGCDNITGHVTSLNLHSS 89

Query: 61  VDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFS 120
                   PL G +++SLLELQHLNYLDLS+N+ L   I +FIG  + LR+L+LS   F+
Sbjct: 90  PLYEHHFTPLTGKVSNSLLELQHLNYLDLSLNN-LDESIMDFIGSLSSLRYLNLSYNLFT 148

Query: 121 GRIPYQLGNLTNLQSLNLGYN-SLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITS 179
             IPY L NL+ LQSL+L Y+    V   GWLSHL+ L  LDL   DLS+ +DWLQV+T+
Sbjct: 149 VTIPYHLRNLSRLQSLDLSYSFDASVENLGWLSHLSSLEHLDLSGSDLSKVNDWLQVVTN 208

Query: 180 LASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALD 239
           L  L+DL L   +L  I    LS MNSS  LA+L LS+  LS++ Y WL+ +S++L  LD
Sbjct: 209 LPRLKDLRLNQCSLTDIIPSPLSFMNSSKFLAVLHLSNNNLSSAIYPWLYNLSNSLADLD 268

Query: 240 LNSN 243
           L+ N
Sbjct: 269 LSGN 272

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490576|ref|XP_003634117.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 124/246 (50%), Positives = 156/246 (63%), Gaps = 30/246 (12%)

Query: 1   MKCIEKERQALLMFKQGLVDDCGYLSSWGSDEGRKDCCKWSGVQCSNRTGHVIMLNLKYK 60
           + C E+ERQALL FKQG+VDD G LSSWG+ E ++DCCKW GV+C+N+TGHVI L+L  +
Sbjct: 33  VGCRERERQALLHFKQGVVDDDGVLSSWGNGEDKRDCCKWRGVKCNNQTGHVIRLDLHAQ 92

Query: 61  VDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFS 120
                    L G I  SL ELQHL +L+LS NDF   P                   NF+
Sbjct: 93  --------SLGGKIGPSLAELQHLKHLNLSSNDFEAFP-------------------NFT 125

Query: 121 GRIPYQLGNLTNLQSLNLGYN--SLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVIT 178
           G +P QLGNL+NLQSL+LGYN   +      WL HL  LT LDL +V+LS+A  W Q I 
Sbjct: 126 GILPTQLGNLSNLQSLDLGYNYGDMTCGNLDWLCHLPFLTHLDLSWVNLSKAIHWPQAIN 185

Query: 179 SLASLRDLYLASSTLPS-INRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLA 237
            + SL +LYL  + LPS I   S+S +NSSTSLA+L L S GL++S Y WLF  SS+L+ 
Sbjct: 186 KMPSLTELYLIDTQLPSIIPTISISHINSSTSLAVLHLPSNGLTSSIYPWLFNFSSSLVH 245

Query: 238 LDLNSN 243
           LDL+ N
Sbjct: 246 LDLSWN 251

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125666|ref|XP_002329688.1| predicted protein [Populus trichocarpa] gi|222870596|gb|EEF07727.1| predicted protein [Populus trichocarpa]

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 130/245 (53%), Positives = 160/245 (65%), Gaps = 10/245 (4%)

Query: 1   MKCIEKERQALLMFKQGLVDDCGYLSSWGSDEGRK-DCCKWSGVQCSNRTGHVIMLNLKY 59
            +CIE+ERQALL FKQ L    G LSSWGS+EG K DCCKW GV C+NRTG + ML+L  
Sbjct: 32  FRCIERERQALLSFKQELEYPSGLLSSWGSEEGEKSDCCKWVGVGCNNRTGRITMLDLH- 90

Query: 60  KVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANF 119
                     + GNI  SLLELQHLNYLDLS N F GNP P F+G   KLR+L LS    
Sbjct: 91  -------GLAVGGNITDSLLELQHLNYLDLSDNSFYGNPFPSFVGSLRKLRYLSLSNNGL 143

Query: 120 SGRIPYQLGNLTNLQSLNLGYN-SLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVIT 178
            GR+ YQLGNL++LQSL+L YN  +      WLS L+ L  L L    L++ASDW+QV+ 
Sbjct: 144 IGRLSYQLGNLSSLQSLDLSYNFDVSFESLDWLSRLSFLEHLHLTGNHLTQASDWIQVVN 203

Query: 179 SLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLAL 238
            L  L+DL L+  +L SI  P+LS +NSS SLA+LDLS   LS+S   WL   S +L+ L
Sbjct: 204 KLPRLKDLQLSDCSLLSIVPPALSFVNSSRSLAILDLSFNHLSSSIVPWLSNSSDSLVDL 263

Query: 239 DLNSN 243
           DL++N
Sbjct: 264 DLSAN 268

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143736|emb|CBI22597.3| unnamed protein product [Vitis vinifera]

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 122/247 (49%), Positives = 155/247 (62%), Gaps = 35/247 (14%)

Query: 1   MKCIEKERQALLMFKQGLVDDCGYLSSWGSDEGRKDCCKWSGVQCSNRTGHVIMLNLKYK 60
           + C E+ERQALL FKQG+VDD G LSSWG+ E ++DCCKW GV+C N+TGHVI+L     
Sbjct: 30  VGCRERERQALLHFKQGVVDDFGMLSSWGNGEDKRDCCKWRGVECDNQTGHVIVL----- 84

Query: 61  VDPVCP-NRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANF 119
            DP  P +  L G I  SL ELQHL +L+LS ND                         F
Sbjct: 85  -DPHAPFDGYLGGKIGPSLAELQHLKHLNLSWND-------------------------F 118

Query: 120 SGRIPYQLGNLTNLQSLNLGYNSLYVS--KFGWLSHLNKLTQLDLDFVDLSEASDWLQVI 177
            G +P QLGNL+NLQSL+LG++  +++     WLSHL  LT LDL  V LS+A  W Q I
Sbjct: 119 EGILPTQLGNLSNLQSLDLGHSFGFMTCGNLEWLSHLPLLTHLDLSGVHLSKAIHWPQAI 178

Query: 178 TSLASLRDLYLASSTLPS-INRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLL 236
             + SL +LYL+ + LP  I   S+S +NSSTSLA+LDLS  GL++S Y WLF  SS+L+
Sbjct: 179 NKMPSLTELYLSYTQLPPIIPTISISHINSSTSLAVLDLSVNGLTSSIYPWLFNFSSSLV 238

Query: 237 ALDLNSN 243
            LDL+ N
Sbjct: 239 HLDLSMN 245

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143738|emb|CBI22599.3| unnamed protein product [Vitis vinifera]

 Score =  200 bits (508), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 121/246 (49%), Positives = 152/246 (61%), Gaps = 36/246 (14%)

Query: 1   MKCIEKERQALLMFKQGLVDDCGYLSSWGSDEGRKDCCKWSGVQCSNRTGHVIMLNLKYK 60
           + C E+ERQALL FKQG+VDD G LSSWG+ E ++DCCKW GV+C+N+TGHVI L+L  +
Sbjct: 30  VGCRERERQALLHFKQGVVDDDGVLSSWGNGEDKRDCCKWRGVKCNNQTGHVIRLDLHAQ 89

Query: 61  VDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFS 120
                    L G I  SL ELQHL +L+LS ND                         F 
Sbjct: 90  --------SLGGKIGPSLAELQHLKHLNLSSND-------------------------FE 116

Query: 121 GRIPYQLGNLTNLQSLNLGYN--SLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVIT 178
           G +P QLGNL+NLQSL+LGYN   +      WL HL  LT LDL +V+LS+A  W Q I 
Sbjct: 117 GILPTQLGNLSNLQSLDLGYNYGDMTCGNLDWLCHLPFLTHLDLSWVNLSKAIHWPQAIN 176

Query: 179 SLASLRDLYLASSTLPS-INRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLA 237
            + SL +LYL  + LPS I   S+S +NSSTSLA+L L S GL++S Y WLF  SS+L+ 
Sbjct: 177 KMPSLTELYLIDTQLPSIIPTISISHINSSTSLAVLHLPSNGLTSSIYPWLFNFSSSLVH 236

Query: 238 LDLNSN 243
           LDL+ N
Sbjct: 237 LDLSWN 242

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105891|ref|XP_002333752.1| predicted protein [Populus trichocarpa] gi|222838400|gb|EEE76765.1| predicted protein [Populus trichocarpa]

 Score =  199 bits (506), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 120/242 (49%), Positives = 160/242 (66%), Gaps = 2/242 (0%)

Query: 3   CIEKERQALLMFKQGLVDDCGYLSSWGSDEGRKDCCKWSGVQCSNRTGHVIMLNLKYKVD 62
           CIE+ERQALL FK+ L+DD G LS+WGS+E ++DCCKW GV CSNRTGHV  L+L ++ +
Sbjct: 40  CIERERQALLKFKEDLIDDFGLLSTWGSEEEKRDCCKWRGVGCSNRTGHVTHLDL-HREN 98

Query: 63  PVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGR 122
                  L GNI++SLLELQHL+YL+L+ + F G+  P FIG   KLR+LDLS  +  G 
Sbjct: 99  YNGYYYQLSGNISNSLLELQHLSYLNLNGSRFGGSSFPYFIGSLKKLRYLDLSSIHVDGT 158

Query: 123 IPYQLGNLTNLQSLNLGY-NSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLA 181
           +  Q  NL+ LQ L+L Y   +  +   +LS+   L  LDL   DLSE  DWLQV+  L 
Sbjct: 159 LSNQFWNLSRLQYLDLSYIQGVNFTSLDFLSNFFSLQHLDLRGNDLSETIDWLQVLNRLP 218

Query: 182 SLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLN 241
            L +L L+S +L  I  PSLS +NSS SLA++D S   LS+S +HWL    ++L+ LDL+
Sbjct: 219 RLHELLLSSCSLSIIGSPSLSLVNSSESLAIVDFSFNDLSSSIFHWLANFGNSLIDLDLS 278

Query: 242 SN 243
            N
Sbjct: 279 HN 280

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116866|ref|XP_002331833.1| predicted protein [Populus trichocarpa] gi|222875071|gb|EEF12202.1| predicted protein [Populus trichocarpa]

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 120/242 (49%), Positives = 160/242 (66%), Gaps = 2/242 (0%)

Query: 3   CIEKERQALLMFKQGLVDDCGYLSSWGSDEGRKDCCKWSGVQCSNRTGHVIMLNLKYKVD 62
           CIE+ERQALL FK+ L+DD G LS+WGS+E ++DCCKW GV CSNRTGHV  L+L ++ +
Sbjct: 40  CIERERQALLKFKEDLIDDFGLLSTWGSEEEKRDCCKWRGVGCSNRTGHVTHLDL-HREN 98

Query: 63  PVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGR 122
                  L GNI++SLLELQHL+YL+L+ + F G+  P FIG   KLR+LDLS  +  G 
Sbjct: 99  YNGYYYQLSGNISNSLLELQHLSYLNLNGSRFGGSSFPYFIGSLKKLRYLDLSSIHVDGT 158

Query: 123 IPYQLGNLTNLQSLNLGY-NSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLA 181
           +  Q  NL+ LQ L+L Y   +  +   +LS+   L  LDL   DLSE  DWLQV+  L 
Sbjct: 159 LSNQFWNLSRLQYLDLSYIQGVNFTSLDFLSNFFSLQHLDLRGNDLSETIDWLQVLNRLP 218

Query: 182 SLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLN 241
            L +L L+S +L  I  PSLS +NSS SLA++D S   LS+S +HWL    ++L+ LDL+
Sbjct: 219 RLHELLLSSCSLSIIGSPSLSLVNSSESLAIVDFSFNDLSSSIFHWLANFGNSLIDLDLS 278

Query: 242 SN 243
            N
Sbjct: 279 HN 280

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356577875|ref|XP_003557047.1| PREDICTED: uncharacterized protein LOC100784241 [Glycine max]

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 117/244 (47%), Positives = 153/244 (62%), Gaps = 9/244 (3%)

Query: 1   MKCIEKERQALLMFKQGLVDDCGYLSSWGSDEGRKDCCKWSGVQCSNRTGHVIMLNLKYK 60
           M C EKER ALL FK GL D    LSSW     + DCC W GV C+N TG V+ +NL   
Sbjct: 1   MTCSEKERNALLSFKHGLADPSNRLSSWSD---KSDCCTWPGVHCNN-TGKVMEINLDTP 56

Query: 61  VDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFS 120
                P R L G I+ SLLEL++LN LDLS N F+  PIP F+G    LR+LDLSL+ F 
Sbjct: 57  AG--SPYRELSGEISPSLLELKYLNRLDLSSNYFVLTPIPSFLGSLESLRYLDLSLSGFM 114

Query: 121 GRIPYQLGNLTNLQSLNLGYN-SLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITS 179
           G IP+QLGNL+NLQ LNLGYN +L +    W+S L+ L  LDL   DL +  +WLQV+++
Sbjct: 115 GLIPHQLGNLSNLQHLNLGYNYALQIDNLNWISRLSSLEYLDLSGSDLHKQGNWLQVLSA 174

Query: 180 LASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALD 239
           L SL +L+L S  + ++  P   +  + T L +LDLS   L++    WLF +S+ L+ LD
Sbjct: 175 LPSLSELHLESCQIDNLGPPKRKA--NFTHLQVLDLSINNLNHQIPSWLFNLSTTLVQLD 232

Query: 240 LNSN 243
           L+SN
Sbjct: 233 LHSN 236

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	243
TAIR|locus:2044767	905	AT2G34930 "AT2G34930" [Arabido	0.917	0.246	0.392	2.6e-33
TAIR|locus:2119445	719	AT4G13820 [Arabidopsis thalian	0.740	0.250	0.358	1.5e-19
TAIR|locus:2119535	725	RLP48 "receptor like protein 4	0.683	0.228	0.357	6.3e-18
TAIR|locus:2825389	784	RLP11 "AT1G71390" [Arabidopsis	0.736	0.228	0.350	8.6e-17
TAIR|locus:2205005	1019	RLP7 "AT1G47890" [Arabidopsis	0.724	0.172	0.341	9.9e-17
TAIR|locus:2078112	868	RLP32 "receptor like protein 3	0.753	0.210	0.362	1.6e-16
TAIR|locus:2090754	711	RLP43 "receptor like protein 4	0.530	0.181	0.391	3.2e-16
TAIR|locus:2055772	983	RLP19 "receptor like protein 1	0.522	0.129	0.393	6.7e-16
TAIR|locus:2119430	741	RLP47 "receptor like protein 4	0.534	0.175	0.390	9.2e-16
TAIR|locus:2144392	957	RLP53 "receptor like protein 5	0.625	0.158	0.375	1.7e-15

TAIR|locus:2044767 AT2G34930 "AT2G34930" [Arabidopsis thaliana (taxid:3702)]

 Score = 373 (136.4 bits), Expect = 2.6e-33, P = 2.6e-33
 Identities = 95/242 (39%), Positives = 131/242 (54%)

Query:     2 KCIEKERQALLMFKQGLVDDCGYLSSWGSDEGRKDCCKWSGVQCSNRTGHVIMLNLKYKV 61
             KCI  ERQALL F+  L D    L SW       DCC W GV C  RT HV+ ++L+   
Sbjct:    32 KCISTERQALLTFRAALTDLSSRLFSWSGP----DCCNWPGVLCDARTSHVVKIDLRNPS 87

Query:    62 DPVCPNR----PLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLA 117
               V  +      LRG I+ SL +L+ L+YLDLS NDF    IPEFIG    LR+L+LS +
Sbjct:    88 QDVRSDEYKRGSLRGKIHPSLTQLKFLSYLDLSSNDFNELEIPEFIGQIVSLRYLNLSSS 147

Query:   118 NFSGRIPYQLGNLTNLQSLNL--------GYNSLYVSKFGWLSHLNK-LTQLDLDFVDLS 168
             +FSG IP  LGNL+ L+SL+L        G  SL  S   WLS L+  L  L++ +V+LS
Sbjct:   148 SFSGEIPTSLGNLSKLESLDLYAESFGDSGTLSLRASNLRWLSSLSSSLKYLNMGYVNLS 207

Query:   169 EASD-WLQVITSLASLRDLYLASSTLPSINRPXXXXXXXXXXXXXXXXXXCGLSNSAYHW 227
              A + WLQ  + +++L++L+L +S L ++  P                    L++   +W
Sbjct:   208 GAGETWLQDFSRISALKELHLFNSELKNLP-PTLSSSADLKLLEVLDLSENSLNSPIPNW 266

Query:   228 LF 229
             LF
Sbjct:   267 LF 268

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0005618 "cell wall" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP;IMP

TAIR|locus:2119445 AT4G13820 [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 70/195 (35%), Positives = 100/195 (51%)

Query:     3 CIEKERQALLMFKQGLV----DDCGYLSSWGSDEGRK--DCCKWSGVQCSNRTGHVIMLN 56
             C + ++ ALL FK        +  G +    +++ R   DCC W G+ C  +TG V+ L+
Sbjct:    29 CRQDQKNALLEFKNEFYVHEFNSNGIVGVKKTEKWRNNTDCCSWDGISCDPKTGKVVELD 88

Query:    57 LKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSL 116
             L         N PLR   +SSL  LQHL+ LDL  N+F G  +P+ IG    LR L L  
Sbjct:    89 LMNSF----LNGPLR--YDSSLFRLQHLHNLDLGSNNFSGI-LPDSIGSLKYLRVLSLGD 141

Query:   117 ANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQV 176
              N  G+IP  LGNLT L +L+L  N         + HLNKLT+L L    LS   ++  +
Sbjct:   142 CNLFGKIPSSLGNLTYLTNLDLSVNDFTGELPDSMGHLNKLTELHLGSAKLS--GNFPSM 199

Query:   177 ITSLASLRDLYLASS 191
             + +L+ L  + L S+
Sbjct:   200 LLNLSELTLIDLGSN 214

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000303 "response to superoxide" evidence=RCA

GO:0008219 "cell death" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

TAIR|locus:2119535 RLP48 "receptor like protein 48" [Arabidopsis thaliana (taxid:3702)]

 Score = 228 (85.3 bits), Expect = 6.3e-18, P = 6.3e-18
 Identities = 64/179 (35%), Positives = 91/179 (50%)

Query:     3 CIEKERQALLMFKQGL-VDDCG-YLSSWGSDE---GRKDCCKWSGVQCSNRTGHVIMLNL 57
             C+  +R ALL FK    V +   ++    + E    + DCC W+ V C  +TG V+ L+L
Sbjct:    34 CLPDQRDALLEFKNEFYVQEFDPHMKCEKATETWRNKTDCCSWNRVSCDPKTGKVVELDL 93

Query:    58 KYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLA 117
                    C N PLR N  SSL  LQHL  L+LS N+  G  +P+ IG    LR L     
Sbjct:    94 MSS----CLNGPLRSN--SSLFRLQHLQSLELSSNNISGI-LPDSIGNLKYLRSLSFRTC 146

Query:   118 NFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQV 176
             +  G+IP  LG+L+ L  L+L YN           +LN+LT L L  ++LS  + W+ +
Sbjct:   147 HLFGKIPSSLGSLSYLTHLDLSYNDFTSEGPDSGGNLNRLTDLQLVLLNLSSVT-WIDL 204

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2825389 RLP11 "AT1G71390" [Arabidopsis thaliana (taxid:3702)]

 Score = 218 (81.8 bits), Expect = 8.6e-17, P = 8.6e-17
 Identities = 67/191 (35%), Positives = 95/191 (49%)

Query:     3 CIEKERQALLMFKQGLVDDCGYLSSWGSDEGRKDCCKWSGVQCSNRTGHVIMLNLKYKVD 62
             C   +R  LL F+          S W       DCC W GV C +++G VI L+L+  + 
Sbjct:    32 CRHDQRDGLLKFRDEFPIFESKSSPWNKTT---DCCSWDGVTCDDKSGQVISLDLRSTL- 87

Query:    63 PVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGR 122
                 N  L+   NSSL  LQ+L +LDLS  +  G  IP  +G  ++L  L+LS     G 
Sbjct:    88 ---LNSSLK--TNSSLFRLQYLRHLDLSGCNLHGE-IPSSLGNLSRLENLELSSNRLVGE 141

Query:   123 IPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLAS 182
             IPY +GNL  L++L+LG N L       L +L+ L  LDLD  + S   +    I +L  
Sbjct:   142 IPYSIGNLKQLRNLSLGDNDLIGEIPSSLGNLSLL--LDLDLWNNSLVGEVPASIGNLNE 199

Query:   183 LRDLYLASSTL 193
             LR + L  ++L
Sbjct:   200 LRVMSLDRNSL 210

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2205005 RLP7 "AT1G47890" [Arabidopsis thaliana (taxid:3702)]

 Score = 219 (82.2 bits), Expect = 9.9e-17, P = 9.9e-17
 Identities = 70/205 (34%), Positives = 106/205 (51%)

Query:     3 CIEKERQALLMFKQ--GLVDDCGYLSSWGSDEGRKDCCKWSGVQCSNRTGHVIMLNLKYK 60
             C   ++ ALL FK   G+VD      SW +   + DCC W G+ C  ++G+VI L+L   
Sbjct:    74 CHSDQKDALLDFKNEFGMVDS----KSWVN---KSDCCSWDGITCDAKSGNVIGLDLS-- 124

Query:    61 VDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFS 120
                +     L+ N  SSL +L+HL  L+L+ N+F  +PIP      T L  LDLS ++ S
Sbjct:   125 --SIFLYGQLKSN--SSLFKLRHLRDLNLANNNFNNSPIPAEFDKLTGLERLDLSQSSLS 180

Query:   121 GRIPYQLGNLTNLQSLNLGYNSLYVSK-FGWLS-----------HLNKLTQLDLDFVDLS 168
             G+IP  L  LT L SL+L  +  +  + F +LS           +L  L +LD+ +V +S
Sbjct:   181 GQIPINLLQLTKLVSLDLSSSDFFGDESFHYLSIDKSFLPLLARNLRNLRELDMSYVKIS 240

Query:   169 EASDWLQVITSLASLRDLYLASSTL 193
               S+  +  +++ SLR L L    L
Sbjct:   241 --SEIPEEFSNIRSLRSLNLNGCNL 263

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2078112 RLP32 "receptor like protein 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 1.6e-16, P = 1.6e-16
 Identities = 74/204 (36%), Positives = 105/204 (51%)

Query:     3 CIEKERQALLMFKQG--LVDDC--GYLSSWGSDEGRKDCCKWSGVQCSNRTGHVIMLNLK 58
             C  ++R ALL  K+   +   C  G   +  S     DCC W G+ C++++G V+ L+L 
Sbjct:    39 CRLEQRDALLELKKEFKIKKPCFDGLHPTTESWANNSDCCYWDGITCNDKSGEVLELDLS 98

Query:    59 YKVDPVCPNRPLRGNINSSL---LELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLS 115
                   C     R + NSSL   L L+ L  LDLS N F G  IP  I  F+ L  LDLS
Sbjct:    99 RS----CLQS--RFHSNSSLFTVLNLRFLTTLDLSYNYFSGQ-IPSCIENFSHLTTLDLS 151

Query:   116 LANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQ 175
                FSG IP  +GNL+ L  L+L  N  +V +  +  ++N+LT L +D  DL+     L 
Sbjct:   152 KNYFSGGIPSSIGNLSQLTFLDLSGNE-FVGEMPFFGNMNQLTNLYVDSNDLTGIFP-LS 209

Query:   176 VITSLASLRDLYLA----SSTLPS 195
             ++ +L  L DL L+    + TLPS
Sbjct:   210 LL-NLKHLSDLSLSRNQFTGTLPS 232

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2090754 RLP43 "receptor like protein 43" [Arabidopsis thaliana (taxid:3702)]

 Score = 212 (79.7 bits), Expect = 3.2e-16, P = 3.2e-16
 Identities = 54/138 (39%), Positives = 75/138 (54%)

Query:    27 SWGSDEGRKDCCKWSGVQCSNRTGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNY 86
             SWG++    DCC W GV C+ ++G VI L+L       C     R + NSS+  L  L  
Sbjct:    74 SWGNNNS--DCCNWEGVTCNAKSGEVIELDLS------CSYLHGRFHSNSSIRNLHFLTT 125

Query:    87 LDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVS 146
             LDLS NDF G  I   I   + L +LDLS  +FSG++P  +GNL++L  L+L  N     
Sbjct:   126 LDLSFNDFKGQ-IMSSIENLSHLTYLDLSFNHFSGQVPSSIGNLSHLTFLDLYCNQFSGQ 184

Query:   147 KFGWLSHLNKLTQLDLDF 164
                 + +L+ LT L+L F
Sbjct:   185 VPSSIGNLSHLTTLELSF 202

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2055772 RLP19 "receptor like protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 6.7e-16, P = 6.7e-16
 Identities = 59/150 (39%), Positives = 82/150 (54%)

Query:    27 SWGSDEGRKDCCKWSGVQCSNRTGHVIMLNLKYKVDPVCPNRPLRG--NINSSLLELQHL 84
             SW ++    DCC W G++C  + G VI L+L +     C    LRG  N NSSL  L  L
Sbjct:    63 SWTNNS---DCCYWDGIKCDAKFGDVIELDLSFS----C----LRGQLNSNSSLFRLPQL 111

Query:    85 NYL---DLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYN 141
              +L   DLS NDF+G  IP  +   + L  LDLS  +FSGRIP  +GNL++L  ++  +N
Sbjct:   112 RFLTTLDLSNNDFIGQ-IPSSLETLSNLTTLDLSRNHFSGRIPSSIGNLSHLIFVDFSHN 170

Query:   142 SL---YVSKFGWLSHLNKLTQLDLDFVDLS 168
             +      S  G+LSHL   T  +L + + S
Sbjct:   171 NFSGQIPSSLGYLSHL---TSFNLSYNNFS 197

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2119430 RLP47 "receptor like protein 47" [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 9.2e-16, P = 9.2e-16
 Identities = 55/141 (39%), Positives = 74/141 (52%)

Query:    36 DCCKWSGVQCSNRTGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFL 95
             DCC W GV C  +TG V+ L+L+Y       N PLR N  SSL  LQHL  L L  N   
Sbjct:    10 DCCSWDGVSCDPKTGVVVELDLQYSH----LNGPLRSN--SSLFRLQHLQKLVLGSNHLS 63

Query:    96 GNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLN 155
             G  +P+ IG   +L+ L L   N  G+IP  LGNL+ L  L+L YN         + +LN
Sbjct:    64 GI-LPDSIGNLKRLKVLVLVNCNLFGKIPSSLGNLSYLTHLDLSYNDFTSEGPDSMGNLN 122

Query:   156 KLTQLDLDFVDLSEASDWLQV 176
             +LT +    + LS  + W+ +
Sbjct:   123 RLTDM---LLKLSSVT-WIDL 139

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2144392 RLP53 "receptor like protein 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 1.7e-15, P = 1.7e-15
 Identities = 66/176 (37%), Positives = 87/176 (49%)

Query:     3 CIEKERQALLMFKQGLV------DDC---GYLS-----SWGSDEGRKDCCKWSGVQCSNR 48
             C  ++R ALL FK          D C   G  S     SWG++    DCC W GV C+ +
Sbjct:    37 CRPEQRDALLAFKNEFEIGKPSPDHCKIYGIESPRKTDSWGNNS---DCCNWEGVTCNAK 93

Query:    49 TGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTK 108
             +G VI L+L       C +   R + NSS+  L  L  LDLS NDF G  I   I   + 
Sbjct:    94 SGEVIELDLS------CSSLHGRFHSNSSIRNLHFLTTLDLSFNDFKGQ-ITSSIENLSH 146

Query:   109 LRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDF 164
             L +LDLS  +FSG+I   +GNL+ L  LNL  N         + +L+ LT LDL +
Sbjct:   147 LTYLDLSSNHFSGQILNSIGNLSRLTYLNLFDNQFSGQAPSSICNLSHLTFLDLSY 202

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00037814001 SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (996 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	243
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-13
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-13
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-07
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	2e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.001
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.004

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 68.7 bits (168), Expect = 2e-13
 Identities = 44/108 (40%), Positives = 58/108 (53%), Gaps = 13/108 (12%)

Query: 40  WSGVQCS--NRTGHVIM--LNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFL 95
           WSG  C   +  G   +  L L         N+ LRG I + + +L+HL  ++LS N   
Sbjct: 404 WSGADCQFDSTKGKWFIDGLGLD--------NQGLRGFIPNDISKLRHLQSINLSGNSIR 455

Query: 96  GNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSL 143
           GN IP  +G  T L  LDLS  +F+G IP  LG LT+L+ LNL  NSL
Sbjct: 456 GN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 68.3 bits (167), Expect = 3e-13
 Identities = 48/138 (34%), Positives = 76/138 (55%), Gaps = 16/138 (11%)

Query: 7   ERQALLMFKQGLVDDCGYLSSWGSDEGRKDCCKWSGVQCSNRTGHVIMLNLKYKVDPVCP 66
           E + LL FK  + D   YLS+W S     D C W G+ C+N +  V+ ++L         
Sbjct: 30  ELELLLSFKSSINDPLKYLSNWNSS---ADVCLWQGITCNN-SSRVVSIDL--------S 77

Query: 67  NRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFT-KLRFLDLSLANFSGRIPY 125
            + + G I+S++  L ++  ++LS N  L  PIP+ I   +  LR+L+LS  NF+G IP 
Sbjct: 78  GKNISGKISSAIFRLPYIQTINLSNNQ-LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR 136

Query: 126 QLGNLTNLQSLNLGYNSL 143
             G++ NL++L+L  N L
Sbjct: 137 --GSIPNLETLDLSNNML 152

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 55.6 bits (134), Expect = 6e-09
 Identities = 40/102 (39%), Positives = 51/102 (50%), Gaps = 2/102 (1%)

Query: 67  NRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQ 126
           N  L+G INS   ++  L  L L+ N F G  +P+  G   +L  LDLS   FSG +P +
Sbjct: 437 NNNLQGRINSRKWDMPSLQMLSLARNKFFGG-LPDSFGS-KRLENLDLSRNQFSGAVPRK 494

Query: 127 LGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLS 168
           LG+L+ L  L L  N L       LS   KL  LDL    LS
Sbjct: 495 LGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLS 536

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 49.1 bits (117), Expect = 9e-07
 Identities = 57/174 (32%), Positives = 77/174 (44%), Gaps = 7/174 (4%)

Query: 70  LRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN 129
           L G I   +  L  LN+LDL  N+  G PIP  +G    L++L L     SG IP  + +
Sbjct: 224 LSGEIPYEIGGLTSLNHLDLVYNNLTG-PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS 282

Query: 130 LTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLA 189
           L  L SL+L  NSL       +  L  L  L L   + +        +TSL  L+ L L 
Sbjct: 283 LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFT--GKIPVALTSLPRLQVLQLW 340

Query: 190 SSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
           S+        +L   N   +L +LDLS+  L+      L   S NL  L L SN
Sbjct: 341 SNKFSGEIPKNLGKHN---NLTVLDLSTNNLTGEIPEGLCS-SGNLFKLILFSN 390

Length = 968

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 43.1 bits (102), Expect = 2e-06
 Identities = 19/41 (46%), Positives = 21/41 (51%), Gaps = 3/41 (7%)

Query: 7  ERQALLMFKQGLVDD-CGYLSSWGSDEGRKDCCKWSGVQCS 46
          +R ALL FK  L  D  G LSSW       D C W+GV C 
Sbjct: 4  DRDALLAFKSSLNGDPSGALSSWNPSSS--DPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.3 bits (110), Expect = 6e-06
 Identities = 29/59 (49%), Positives = 37/59 (62%), Gaps = 1/59 (1%)

Query: 70  LRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLG 128
           +RGNI  SL  +  L  LDLS N F G+ IPE +G  T LR L+L+  + SGR+P  LG
Sbjct: 454 IRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 30/77 (38%), Positives = 37/77 (48%), Gaps = 1/77 (1%)

Query: 70  LRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN 129
           L G I   L   + L  LDLS N   G  IP        L  LDLS    SG IP  LGN
Sbjct: 511 LSGEIPDELSSCKKLVSLDLSHNQLSGQ-IPASFSEMPVLSQLDLSQNQLSGEIPKNLGN 569

Query: 130 LTNLQSLNLGYNSLYVS 146
           + +L  +N+ +N L+ S
Sbjct: 570 VESLVQVNISHNHLHGS 586

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 39.4 bits (92), Expect = 0.001
 Identities = 53/158 (33%), Positives = 67/158 (42%), Gaps = 19/158 (12%)

Query: 70  LRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLR---FLDLSLANFSGRIPYQ 126
           L G I  SL   + L  + L  N F G    E    FTKL    FLD+S  N  GRI  +
Sbjct: 392 LEGEIPKSLGACRSLRRVRLQDNSFSG----ELPSEFTKLPLVYFLDISNNNLQGRINSR 447

Query: 127 LGNLTNLQSLNLGYNSLYVSKFGWLSHL---NKLTQLDLDFVDLSEASDWLQVITSLASL 183
             ++ +LQ L+L  N      FG L       +L  LDL     S A    + + SL+ L
Sbjct: 448 KWDMPSLQMLSLARNKF----FGGLPDSFGSKRLENLDLSRNQFSGAVP--RKLGSLSEL 501

Query: 184 RDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLS 221
             L L+ + L       LS   S   L  LDLS   LS
Sbjct: 502 MQLKLSENKLSGEIPDELS---SCKKLVSLDLSHNQLS 536

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 37.9 bits (88), Expect = 0.004
 Identities = 30/74 (40%), Positives = 35/74 (47%), Gaps = 1/74 (1%)

Query: 70  LRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN 129
             G I  +L  L  L  L L  N F G  IP+ +G    L  LDLS  N +G IP  L +
Sbjct: 320 FTGKIPVALTSLPRLQVLQLWSNKFSGE-IPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS 378

Query: 130 LTNLQSLNLGYNSL 143
             NL  L L  NSL
Sbjct: 379 SGNLFKLILFSNSL 392

Length = 968

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	243
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.96
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.86
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.77
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.75
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.71
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.7
PLN03150	623	hypothetical protein; Provisional	99.69
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.65
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.63
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.56
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.54
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.48
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.43
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.42
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.42
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.41
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.4
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.4
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.39
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.38
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.37
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.35
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.3
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.28
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.27
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.26
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.18
PLN03150	623	hypothetical protein; Provisional	99.11
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.11
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.11
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.07
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.01
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.98
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.98
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.95
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.9
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.85
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.78
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.66
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.6
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.58
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.54
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.54
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.49
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.48
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.38
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.38
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.31
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.28
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.27
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.25
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.06
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.06
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.02
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.0
PRK15386	426	type III secretion protein GogB; Provisional	97.94
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.94
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.9
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.88
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.87
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.51
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.49
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.44
PRK15386	426	type III secretion protein GogB; Provisional	97.43
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.0
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.78
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.66
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.11
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.29
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	94.77
KOG4308	478	consensus LRR-containing protein [Function unknown	94.76
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.58
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.57
KOG1947	482	consensus Leucine rich repeat proteins, some prote	93.41
KOG1947	482	consensus Leucine rich repeat proteins, some prote	92.99
KOG4341	483	consensus F-box protein containing LRR [General fu	91.96
smart00370	26	LRR Leucine-rich repeats, outliers.	91.81
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.81
KOG3864	221	consensus Uncharacterized conserved protein [Funct	90.39
KOG0473	326	consensus Leucine-rich repeat protein [Function un	90.21
KOG4341	483	consensus F-box protein containing LRR [General fu	89.07
KOG0473	326	consensus Leucine-rich repeat protein [Function un	87.75
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	86.77
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	86.44

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.96  E-value=1.7e-28  Score=229.95  Aligned_cols=221  Identities=31%  Similarity=0.441  Sum_probs=138.4

Q ss_pred             CHHHHHHHHHhhhcccCCCCCCCCCCCCCCCCCCcccceEEecCCCCceEEEecCCCCCCCCCCCCcccccchhhccCCC
Q 044082            4 IEKERQALLMFKQGLVDDCGYLSSWGSDEGRKDCCKWSGVQCSNRTGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQH   83 (243)
Q Consensus         4 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~c~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~   83 (243)
                      .+.|+.||++|++++.+|.+++.+|.   ...++|.|.|+.|.. .++|+.|||+++        .+.+.++..+..+++
T Consensus        27 ~~~~~~~l~~~~~~~~~~~~~~~~w~---~~~~~c~w~gv~c~~-~~~v~~L~L~~~--------~i~~~~~~~~~~l~~   94 (968)
T PLN00113         27 HAEELELLLSFKSSINDPLKYLSNWN---SSADVCLWQGITCNN-SSRVVSIDLSGK--------NISGKISSAIFRLPY   94 (968)
T ss_pred             CHHHHHHHHHHHHhCCCCcccCCCCC---CCCCCCcCcceecCC-CCcEEEEEecCC--------CccccCChHHhCCCC
Confidence            45799999999999988888888997   578899999999974 568999999994        677777777777777


Q ss_pred             CcEEEccCCCCCCCCcchhhc-CCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEc
Q 044082           84 LNYLDLSVNDFLGNPIPEFIG-FFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDL  162 (243)
Q Consensus        84 L~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  162 (243)
                      |++|++++|.+.+. +|..+. .+++|++|++++|.+.+.+|.  +.+++|++|++++|.+++..|..++.+++|++|++
T Consensus        95 L~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L  171 (968)
T PLN00113         95 IQTINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDL  171 (968)
T ss_pred             CCEEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEEC
Confidence            77777777777654 555443 666666666666666544443  23444555555555544444444444455555555


Q ss_pred             CCccccCC-cc---------------------hHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCcc
Q 044082          163 DFVDLSEA-SD---------------------WLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGL  220 (243)
Q Consensus       163 ~~n~l~~~-~~---------------------~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i  220 (243)
                      ++|.+.+. |.                     ++..+..+++|++|++++|.+.+..+  ..+..+ ++|++|++++|.+
T Consensus       172 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p--~~l~~l-~~L~~L~L~~n~l  248 (968)
T PLN00113        172 GGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIP--YEIGGL-TSLNHLDLVYNNL  248 (968)
T ss_pred             ccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCC--hhHhcC-CCCCEEECcCcee
Confidence            55444333 21                     11244444555555555555544444  344444 5555555555555


Q ss_pred             ccccchhHHhhhccCceeeCCCC
Q 044082          221 SNSAYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       221 ~~~~~~~l~~l~~~L~~L~l~~N  243 (243)
                      ++.+|..++++++ |++|++++|
T Consensus       249 ~~~~p~~l~~l~~-L~~L~L~~n  270 (968)
T PLN00113        249 TGPIPSSLGNLKN-LQYLFLYQN  270 (968)
T ss_pred             ccccChhHhCCCC-CCEEECcCC
Confidence            5555555555555 555555543

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.86  E-value=1.4e-21  Score=183.40  Aligned_cols=168  Identities=30%  Similarity=0.395  Sum_probs=93.4

Q ss_pred             CCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCC
Q 044082           68 RPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSK  147 (243)
Q Consensus        68 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~  147 (243)
                      |.+.+.+|..++++++|++|++++|.+.+. +|..+..+++|++|++++|.+.+..|..++.+++|++|++++|.+++..
T Consensus       150 n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~  228 (968)
T PLN00113        150 NMLSGEIPNDIGSFSSLKVLDLGGNVLVGK-IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEI  228 (968)
T ss_pred             CcccccCChHHhcCCCCCEEECccCccccc-CChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcC
Confidence            455666666666666666666666666554 6666666666666666666666556666666666666666666665555


Q ss_pred             ccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchh
Q 044082          148 FGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHW  227 (243)
Q Consensus       148 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~  227 (243)
                      |..++.+++|++|++++|.+.+.  ++..+..+++|++|++++|.+.+..+  ..+..+ ++|+.|++++|.+++.+|..
T Consensus       229 p~~l~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~L~~n~l~~~~p--~~l~~l-~~L~~L~Ls~n~l~~~~p~~  303 (968)
T PLN00113        229 PYEIGGLTSLNHLDLVYNNLTGP--IPSSLGNLKNLQYLFLYQNKLSGPIP--PSIFSL-QKLISLDLSDNSLSGEIPEL  303 (968)
T ss_pred             ChhHhcCCCCCEEECcCceeccc--cChhHhCCCCCCEEECcCCeeeccCc--hhHhhc-cCcCEEECcCCeeccCCChh
Confidence            55556666666666666655443  11245555555555555555544433  333333 44444444444444444444


Q ss_pred             HHhhhccCceeeCCC
Q 044082          228 LFKISSNLLALDLNS  242 (243)
Q Consensus       228 l~~l~~~L~~L~l~~  242 (243)
                      +..+++ |++|++++
T Consensus       304 ~~~l~~-L~~L~l~~  317 (968)
T PLN00113        304 VIQLQN-LEILHLFS  317 (968)
T ss_pred             HcCCCC-CcEEECCC
Confidence            444444 44444443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.77  E-value=8.4e-20  Score=154.49  Aligned_cols=65  Identities=22%  Similarity=0.077  Sum_probs=32.1

Q ss_pred             CCCCceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCcccc
Q 044082           47 NRTGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFS  120 (243)
Q Consensus        47 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~  120 (243)
                      +...+++.|+|++|.|        +..-...|..+.+|..|.|++|+++.. .+..|..+++|+.|++..|.+.
T Consensus       170 p~~~ni~~L~La~N~I--------t~l~~~~F~~lnsL~tlkLsrNrittL-p~r~Fk~L~~L~~LdLnrN~ir  234 (873)
T KOG4194|consen  170 PAKVNIKKLNLASNRI--------TTLETGHFDSLNSLLTLKLSRNRITTL-PQRSFKRLPKLESLDLNRNRIR  234 (873)
T ss_pred             CCCCCceEEeeccccc--------cccccccccccchheeeecccCccccc-CHHHhhhcchhhhhhcccccee
Confidence            3445677788887544        333333444444444555555554443 3333444444444444444443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.75  E-value=3.1e-19  Score=151.09  Aligned_cols=186  Identities=23%  Similarity=0.223  Sum_probs=133.5

Q ss_pred             CceEEEecCCCCC----------------CCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEe
Q 044082           50 GHVIMLNLKYKVD----------------PVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLD  113 (243)
Q Consensus        50 ~~l~~L~l~~~~~----------------~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  113 (243)
                      ++++.|+|.+|.|                +++..|.++..--+.+..-.++++|+|++|.|+.. -.+.|..+.+|..|.
T Consensus       125 ghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l-~~~~F~~lnsL~tlk  203 (873)
T KOG4194|consen  125 GHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTL-ETGHFDSLNSLLTLK  203 (873)
T ss_pred             cceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccccc-ccccccccchheeee
Confidence            6789999999887                67777777754445667778899999999999987 678899999999999


Q ss_pred             cCCccccccCCc-CCCCCCCCcEEEccCCccccCCccccCC------------------------CCCCCEEEcCCcccc
Q 044082          114 LSLANFSGRIPY-QLGNLTNLQSLNLGYNSLYVSKFGWLSH------------------------LNKLTQLDLDFVDLS  168 (243)
Q Consensus       114 l~~~~~~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~------------------------l~~L~~L~l~~n~l~  168 (243)
                      ++.|.++ .+|. .|.++++|+.|++..|++.....-.|.+                        +.++++|+++.|.++
T Consensus       204 LsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~  282 (873)
T KOG4194|consen  204 LSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ  282 (873)
T ss_pred             cccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh
Confidence            9999999 5554 6777999999999999865322222333                        345555555555555


Q ss_pred             CCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082          169 EASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       169 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N  243 (243)
                      ...+  .++-.+..|++|++++|.+..+..  ..+... ++|+.|+|++|+|+...+.+|..+.. |++|++++|
T Consensus       283 ~vn~--g~lfgLt~L~~L~lS~NaI~rih~--d~Wsft-qkL~~LdLs~N~i~~l~~~sf~~L~~-Le~LnLs~N  351 (873)
T KOG4194|consen  283 AVNE--GWLFGLTSLEQLDLSYNAIQRIHI--DSWSFT-QKLKELDLSSNRITRLDEGSFRVLSQ-LEELNLSHN  351 (873)
T ss_pred             hhhc--ccccccchhhhhccchhhhheeec--chhhhc-ccceeEeccccccccCChhHHHHHHH-hhhhccccc
Confidence            4421  244556667777777777766655  344444 77888888888887666667777777 777777765

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.71  E-value=7.2e-19  Score=128.00  Aligned_cols=163  Identities=25%  Similarity=0.305  Sum_probs=129.8

Q ss_pred             CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCC
Q 044082           50 GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN  129 (243)
Q Consensus        50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~  129 (243)
                      .+++.|-|++        |.++ .+|+.++.+.+|+.|++.+|.++.  +|..++.+++|+.|+++-|.+. ..|..|+.
T Consensus        33 s~ITrLtLSH--------NKl~-~vppnia~l~nlevln~~nnqie~--lp~~issl~klr~lnvgmnrl~-~lprgfgs  100 (264)
T KOG0617|consen   33 SNITRLTLSH--------NKLT-VVPPNIAELKNLEVLNLSNNQIEE--LPTSISSLPKLRILNVGMNRLN-ILPRGFGS  100 (264)
T ss_pred             hhhhhhhccc--------Ccee-ecCCcHHHhhhhhhhhcccchhhh--cChhhhhchhhhheecchhhhh-cCccccCC
Confidence            4677788888        4555 567788888888888888888877  7888888888888888888888 88888888


Q ss_pred             CCCCcEEEccCCcccc-CCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCC
Q 044082          130 LTNLQSLNLGYNSLYV-SKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSST  208 (243)
Q Consensus       130 l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~  208 (243)
                      +|.|+.||+.+|.+.. .+|..|..|..|+.|.+++|.+.-.|.   .++++.+|+.|.+.+|.+-..+   ..++.+ .
T Consensus       101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~---dvg~lt~lqil~lrdndll~lp---keig~l-t  173 (264)
T KOG0617|consen  101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPP---DVGKLTNLQILSLRDNDLLSLP---KEIGDL-T  173 (264)
T ss_pred             CchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCCh---hhhhhcceeEEeeccCchhhCc---HHHHHH-H
Confidence            8888888888887754 467777778888888888888877754   7788888888888888876554   467777 8


Q ss_pred             CCcEEECCCCccccccchhHHhhh
Q 044082          209 SLALLDLSSCGLSNSAYHWLFKIS  232 (243)
Q Consensus       209 ~L~~L~L~~n~i~~~~~~~l~~l~  232 (243)
                      .|++|++.+|+++ .+|+.++.+.
T Consensus       174 ~lrelhiqgnrl~-vlppel~~l~  196 (264)
T KOG0617|consen  174 RLRELHIQGNRLT-VLPPELANLD  196 (264)
T ss_pred             HHHHHhcccceee-ecChhhhhhh
Confidence            8888888888888 5676676654

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.70  E-value=1.9e-19  Score=131.02  Aligned_cols=155  Identities=26%  Similarity=0.345  Sum_probs=138.7

Q ss_pred             hccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCC
Q 044082           78 LLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKL  157 (243)
Q Consensus        78 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  157 (243)
                      +.++.+++.|.++.|+++.  +|+.++.+.+|+.|++.+|.+. .+|..++.+++|+.|+++.|++. ..|..|+.++-|
T Consensus        29 Lf~~s~ITrLtLSHNKl~~--vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l  104 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLTV--VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL  104 (264)
T ss_pred             ccchhhhhhhhcccCceee--cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence            5567888999999999988  7889999999999999999999 89999999999999999999987 578889999999


Q ss_pred             CEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCce
Q 044082          158 TQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLA  237 (243)
Q Consensus       158 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~  237 (243)
                      +.|++++|.+.+.. ++..+-.+..|+.|.+++|.|.-.++   .++++ ++|+.|.+.+|.+- ..|+.++.+.+ |++
T Consensus       105 evldltynnl~e~~-lpgnff~m~tlralyl~dndfe~lp~---dvg~l-t~lqil~lrdndll-~lpkeig~lt~-lre  177 (264)
T KOG0617|consen  105 EVLDLTYNNLNENS-LPGNFFYMTTLRALYLGDNDFEILPP---DVGKL-TNLQILSLRDNDLL-SLPKEIGDLTR-LRE  177 (264)
T ss_pred             hhhhcccccccccc-CCcchhHHHHHHHHHhcCCCcccCCh---hhhhh-cceeEEeeccCchh-hCcHHHHHHHH-HHH
Confidence            99999999998763 24578888999999999999976554   88898 99999999999987 79999999999 999


Q ss_pred             eeCCCC
Q 044082          238 LDLNSN  243 (243)
Q Consensus       238 L~l~~N  243 (243)
                      |.+.+|
T Consensus       178 lhiqgn  183 (264)
T KOG0617|consen  178 LHIQGN  183 (264)
T ss_pred             Hhcccc
Confidence            998876

>PLN03150 hypothetical protein; Provisional

Probab=99.69  E-value=3.1e-16  Score=140.14  Aligned_cols=149  Identities=34%  Similarity=0.436  Sum_probs=127.2

Q ss_pred             CHHHHHHHHHhhhcccCCCCCCCCCCCCCCCCCCc----ccceEEecCC--C--CceEEEecCCCCCCCCCCCCcccccc
Q 044082            4 IEKERQALLMFKQGLVDDCGYLSSWGSDEGRKDCC----KWSGVQCSNR--T--GHVIMLNLKYKVDPVCPNRPLRGNIN   75 (243)
Q Consensus         4 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~----~~~~~~c~~~--~--~~l~~L~l~~~~~~~~~~~~~~~~~~   75 (243)
                      .+.|..||++++++++++..  .+|.    ++.|+    .|.|+.|...  .  ..|+.|+|++        |.+.|.+|
T Consensus       370 ~~~~~~aL~~~k~~~~~~~~--~~W~----g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~--------n~L~g~ip  435 (623)
T PLN03150        370 LLEEVSALQTLKSSLGLPLR--FGWN----GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDN--------QGLRGFIP  435 (623)
T ss_pred             CchHHHHHHHHHHhcCCccc--CCCC----CCCCCCcccccccceeeccCCCCceEEEEEECCC--------CCccccCC
Confidence            55789999999999966543  3786    33332    7999999521  1  2589999999        59999999


Q ss_pred             hhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCC-
Q 044082           76 SSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHL-  154 (243)
Q Consensus        76 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l-  154 (243)
                      ..++++++|+.|++++|.+.+. +|..+..+++|+.|++++|.+.+.+|..++.+++|++|++++|.+++.+|..+... 
T Consensus       436 ~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~  514 (623)
T PLN03150        436 NDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRL  514 (623)
T ss_pred             HHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhcc
Confidence            9999999999999999999987 99999999999999999999999999999999999999999999999999887753 


Q ss_pred             CCCCEEEcCCccc
Q 044082          155 NKLTQLDLDFVDL  167 (243)
Q Consensus       155 ~~L~~L~l~~n~l  167 (243)
                      .++..+++.+|..
T Consensus       515 ~~~~~l~~~~N~~  527 (623)
T PLN03150        515 LHRASFNFTDNAG  527 (623)
T ss_pred             ccCceEEecCCcc
Confidence            4677888888753

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.65  E-value=7.9e-18  Score=144.02  Aligned_cols=182  Identities=24%  Similarity=0.240  Sum_probs=102.7

Q ss_pred             ceEEEecCCCCC---------------CCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecC
Q 044082           51 HVIMLNLKYKVD---------------PVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLS  115 (243)
Q Consensus        51 ~l~~L~l~~~~~---------------~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~  115 (243)
                      .++.||||.|.+               +++++|+|....-+-+.++..|-+||+++|++..  +|+.+..+..|++|.++
T Consensus       104 dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~--LPPQ~RRL~~LqtL~Ls  181 (1255)
T KOG0444|consen  104 DLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEM--LPPQIRRLSMLQTLKLS  181 (1255)
T ss_pred             cceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhh--cCHHHHHHhhhhhhhcC
Confidence            466777777543               3444455553323344566666666666666655  55556666666666666


Q ss_pred             CccccccCCcCCCCCCCCcEEEccCCccc-cCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCC
Q 044082          116 LANFSGRIPYQLGNLTNLQSLNLGYNSLY-VSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLP  194 (243)
Q Consensus       116 ~~~~~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~  194 (243)
                      +|.+...--..+..+.+|+.|.+++.+-+ .-+|.++-.+.+|+.++++.|.+...|+   -+-++++|+.|+|++|+++
T Consensus       182 ~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPe---cly~l~~LrrLNLS~N~it  258 (1255)
T KOG0444|consen  182 NNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPE---CLYKLRNLRRLNLSGNKIT  258 (1255)
T ss_pred             CChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchH---HHhhhhhhheeccCcCcee
Confidence            66554211122334444444555443321 2345555556666666666666655554   5556666677777777666


Q ss_pred             CCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082          195 SINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       195 ~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N  243 (243)
                      ....   ....+ .+|++|+++.|+++ .+|..+.++++ |+.|.+.+|
T Consensus       259 eL~~---~~~~W-~~lEtLNlSrNQLt-~LP~avcKL~k-L~kLy~n~N  301 (1255)
T KOG0444|consen  259 ELNM---TEGEW-ENLETLNLSRNQLT-VLPDAVCKLTK-LTKLYANNN  301 (1255)
T ss_pred             eeec---cHHHH-hhhhhhccccchhc-cchHHHhhhHH-HHHHHhccC
Confidence            5432   34444 66666777777766 56666666666 666655544

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.63  E-value=4.6e-17  Score=139.43  Aligned_cols=175  Identities=22%  Similarity=0.239  Sum_probs=149.4

Q ss_pred             CceEEEecCCCCCCCCCCCCcc-cccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCC
Q 044082           50 GHVIMLNLKYKVDPVCPNRPLR-GNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLG  128 (243)
Q Consensus        50 ~~l~~L~l~~~~~~~~~~~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~  128 (243)
                      +-|+.+|+++        |.++ +.+|..+..|++++.|.+....+..  +|+.++.+.+|++|.+.+|.+. .+-..++
T Consensus         7 pFVrGvDfsg--------NDFsg~~FP~~v~qMt~~~WLkLnrt~L~~--vPeEL~~lqkLEHLs~~HN~L~-~vhGELs   75 (1255)
T KOG0444|consen    7 PFVRGVDFSG--------NDFSGDRFPHDVEQMTQMTWLKLNRTKLEQ--VPEELSRLQKLEHLSMAHNQLI-SVHGELS   75 (1255)
T ss_pred             ceeecccccC--------CcCCCCcCchhHHHhhheeEEEechhhhhh--ChHHHHHHhhhhhhhhhhhhhH-hhhhhhc
Confidence            5688999999        6888 5679999999999999999999887  8999999999999999999988 6666788


Q ss_pred             CCCCCcEEEccCCcccc-CCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCC
Q 044082          129 NLTNLQSLNLGYNSLYV-SKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSS  207 (243)
Q Consensus       129 ~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~  207 (243)
                      .+|.|+.+.+..|++.. -+|..+-.+..|.+|+++.|.+...|.   .+..-+++-.|+|++|++..++.  .-+.++ 
T Consensus        76 ~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~---~LE~AKn~iVLNLS~N~IetIPn--~lfinL-  149 (1255)
T KOG0444|consen   76 DLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPT---NLEYAKNSIVLNLSYNNIETIPN--SLFINL-  149 (1255)
T ss_pred             cchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcch---hhhhhcCcEEEEcccCccccCCc--hHHHhh-
Confidence            88999999998887653 356778888999999999999988876   77777888899999999988876  556666 


Q ss_pred             CCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082          208 TSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       208 ~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N  243 (243)
                      ..|-.|||++|++. .+|+.+..+.. |++|++++|
T Consensus       150 tDLLfLDLS~NrLe-~LPPQ~RRL~~-LqtL~Ls~N  183 (1255)
T KOG0444|consen  150 TDLLFLDLSNNRLE-MLPPQIRRLSM-LQTLKLSNN  183 (1255)
T ss_pred             HhHhhhccccchhh-hcCHHHHHHhh-hhhhhcCCC
Confidence            88888999999997 67778888888 999999887

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.56  E-value=1.1e-15  Score=126.36  Aligned_cols=184  Identities=25%  Similarity=0.225  Sum_probs=119.9

Q ss_pred             CCceEEEecCCCCCCCCCCCCcccccchhhccCCC---CcEEEccCCCCCCCC---cchhhcCC-CCCcEEecCCccccc
Q 044082           49 TGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQH---LNYLDLSVNDFLGNP---IPEFIGFF-TKLRFLDLSLANFSG  121 (243)
Q Consensus        49 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~---L~~L~l~~n~l~~~~---~~~~~~~l-~~L~~L~l~~~~~~~  121 (243)
                      ..+++.|+++++        .+.+..+..+..+..   |++|++++|.+....   +...+..+ ++|+.|++++|.+++
T Consensus        80 ~~~L~~L~l~~~--------~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~  151 (319)
T cd00116          80 GCGLQELDLSDN--------ALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEG  151 (319)
T ss_pred             cCceeEEEccCC--------CCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCc
Confidence            458889999884        666555555555555   888888888876321   23345566 788888888888773


Q ss_pred             c----CCcCCCCCCCCcEEEccCCccccC----CccccCCCCCCCEEEcCCccccCC--cchHHHhhccccccccccccc
Q 044082          122 R----IPYQLGNLTNLQSLNLGYNSLYVS----KFGWLSHLNKLTQLDLDFVDLSEA--SDWLQVITSLASLRDLYLASS  191 (243)
Q Consensus       122 ~----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~--~~~~~~~~~l~~L~~L~l~~n  191 (243)
                      .    ++..+..+++|++|++++|.+++.    ++..+...++|++|++++|.+.+.  ..+...+..+++|++|++++|
T Consensus       152 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n  231 (319)
T cd00116         152 ASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN  231 (319)
T ss_pred             hHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC
Confidence            2    233455667788888888887642    223344556888888888887655  233445667778888888888


Q ss_pred             cCCCCCCCCcccccC----CCCCcEEECCCCccccc----cchhHHhhhccCceeeCCCC
Q 044082          192 TLPSINRPSLSSMNS----STSLALLDLSSCGLSNS----AYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       192 ~~~~~~~~~~~~~~~----~~~L~~L~L~~n~i~~~----~~~~l~~l~~~L~~L~l~~N  243 (243)
                      .+++...  ..+...    .+.|+.|++++|.+++.    +...+..++. |+++++++|
T Consensus       232 ~l~~~~~--~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~-L~~l~l~~N  288 (319)
T cd00116         232 NLTDAGA--AALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKES-LLELDLRGN  288 (319)
T ss_pred             cCchHHH--HHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCC-ccEEECCCC
Confidence            7764222  121111    16788888888888632    3334445555 888888776

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.54  E-value=2.3e-15  Score=122.83  Aligned_cols=85  Identities=32%  Similarity=0.356  Sum_probs=59.0

Q ss_pred             cCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCC-----------------------CCCCCCcccccCC
Q 044082          151 LSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLP-----------------------SINRPSLSSMNSS  207 (243)
Q Consensus       151 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~-----------------------~~~~~~~~~~~~~  207 (243)
                      ++.+++|..|++++|.+.+.|.   .+..+..|+.|+++.|+|.                       .+.+  ..+... 
T Consensus       431 l~~l~kLt~L~L~NN~Ln~LP~---e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~--~~l~nm-  504 (565)
T KOG0472|consen  431 LSQLQKLTFLDLSNNLLNDLPE---EMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDP--SGLKNM-  504 (565)
T ss_pred             HHhhhcceeeecccchhhhcch---hhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccCh--HHhhhh-
Confidence            3344556666666666666554   4444555666666666554                       3333  234455 


Q ss_pred             CCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082          208 TSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       208 ~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N  243 (243)
                      .+|.+||+.+|.+. .+|+.++++.+ |++|++++|
T Consensus       505 ~nL~tLDL~nNdlq-~IPp~Lgnmtn-L~hLeL~gN  538 (565)
T KOG0472|consen  505 RNLTTLDLQNNDLQ-QIPPILGNMTN-LRHLELDGN  538 (565)
T ss_pred             hhcceeccCCCchh-hCChhhccccc-eeEEEecCC
Confidence            89999999999998 79999999999 999999987

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.48  E-value=1.3e-14  Score=119.99  Aligned_cols=183  Identities=22%  Similarity=0.185  Sum_probs=132.1

Q ss_pred             CceEEEecCCCCCCCCCCCCcc------cccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCC---CcEEecCCcccc
Q 044082           50 GHVIMLNLKYKVDPVCPNRPLR------GNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTK---LRFLDLSLANFS  120 (243)
Q Consensus        50 ~~l~~L~l~~~~~~~~~~~~~~------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~---L~~L~l~~~~~~  120 (243)
                      +.++.++++++        .+.      ..++..+.++++|+.|++++|.+... .+..+..+.+   |++|++++|.+.
T Consensus        51 ~~l~~l~l~~~--------~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~~~~L~~L~ls~~~~~  121 (319)
T cd00116          51 PSLKELCLSLN--------ETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD-GCGVLESLLRSSSLQELKLNNNGLG  121 (319)
T ss_pred             CCceEEecccc--------ccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh-HHHHHHHHhccCcccEEEeeCCccc
Confidence            45888888884        443      23456778889999999999998765 5666665555   999999999887


Q ss_pred             c----cCCcCCCCC-CCCcEEEccCCccccC----CccccCCCCCCCEEEcCCccccCC--cchHHHhhccccccccccc
Q 044082          121 G----RIPYQLGNL-TNLQSLNLGYNSLYVS----KFGWLSHLNKLTQLDLDFVDLSEA--SDWLQVITSLASLRDLYLA  189 (243)
Q Consensus       121 ~----~~~~~l~~l-~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~--~~~~~~~~~l~~L~~L~l~  189 (243)
                      +    .+...+..+ ++|+.|++++|.+++.    .+..+..+.+|++|++++|.+.+.  +.++..+...++|++|+++
T Consensus       122 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~  201 (319)
T cd00116         122 DRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLN  201 (319)
T ss_pred             hHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEecc
Confidence            3    222344566 8899999999998843    234466678899999999998854  3334456666799999999


Q ss_pred             cccCCCCCCC--CcccccCCCCCcEEECCCCccccccchhHHhh-----hccCceeeCCCC
Q 044082          190 SSTLPSINRP--SLSSMNSSTSLALLDLSSCGLSNSAYHWLFKI-----SSNLLALDLNSN  243 (243)
Q Consensus       190 ~n~~~~~~~~--~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l-----~~~L~~L~l~~N  243 (243)
                      +|.+.+....  ...+... ++|+.|++++|.+++.....+...     +. |++|++++|
T Consensus       202 ~n~i~~~~~~~l~~~~~~~-~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~-L~~L~l~~n  260 (319)
T cd00116         202 NNGLTDEGASALAETLASL-KSLEVLNLGDNNLTDAGAAALASALLSPNIS-LLTLSLSCN  260 (319)
T ss_pred             CCccChHHHHHHHHHhccc-CCCCEEecCCCcCchHHHHHHHHHHhccCCC-ceEEEccCC
Confidence            9988754320  0123344 889999999999987555545443     46 999999876

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.43  E-value=1.2e-15  Score=124.54  Aligned_cols=157  Identities=25%  Similarity=0.254  Sum_probs=103.0

Q ss_pred             ccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccC
Q 044082           73 NINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLS  152 (243)
Q Consensus        73 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~  152 (243)
                      ..|+.++.+..+..+++.+|.+... .|..+. |+.|++++...|-+. .+|+.++.+.+|+.|++..|++.. .| .|+
T Consensus       151 slp~~~~~~~~l~~l~~~~n~l~~l-~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~-lP-ef~  225 (565)
T KOG0472|consen  151 SLPEDMVNLSKLSKLDLEGNKLKAL-PENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIRF-LP-EFP  225 (565)
T ss_pred             cCchHHHHHHHHHHhhccccchhhC-CHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhccccc-CC-CCC
Confidence            3555566666666666666666653 333333 666666666666555 666666666667777777776653 34 366


Q ss_pred             CCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhh
Q 044082          153 HLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKIS  232 (243)
Q Consensus       153 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~  232 (243)
                      .+..|..+.++.|.|.-.|+  +..++++++..|++.+|++...+.   .+..+ .+|+.||+++|.|+ ..|..++++ 
T Consensus       226 gcs~L~Elh~g~N~i~~lpa--e~~~~L~~l~vLDLRdNklke~Pd---e~clL-rsL~rLDlSNN~is-~Lp~sLgnl-  297 (565)
T KOG0472|consen  226 GCSLLKELHVGENQIEMLPA--EHLKHLNSLLVLDLRDNKLKEVPD---EICLL-RSLERLDLSNNDIS-SLPYSLGNL-  297 (565)
T ss_pred             ccHHHHHHHhcccHHHhhHH--HHhcccccceeeeccccccccCch---HHHHh-hhhhhhcccCCccc-cCCcccccc-
Confidence            66666777777776666653  355677777888888888776543   45555 77888888888887 467777777 


Q ss_pred             ccCceeeCCCC
Q 044082          233 SNLLALDLNSN  243 (243)
Q Consensus       233 ~~L~~L~l~~N  243 (243)
                      + |+.|.+.||
T Consensus       298 h-L~~L~leGN  307 (565)
T KOG0472|consen  298 H-LKFLALEGN  307 (565)
T ss_pred             e-eeehhhcCC
Confidence            5 777777765

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.42  E-value=1.1e-14  Score=118.54  Aligned_cols=82  Identities=24%  Similarity=0.263  Sum_probs=61.4

Q ss_pred             CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCC-ccccccCCc-CC
Q 044082           50 GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSL-ANFSGRIPY-QL  127 (243)
Q Consensus        50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~-~l  127 (243)
                      ...+.++|..        |+|+...+.+|+.+++|+.|||+.|.|+.. -|+.|.+++.+..|-+.+ |.|+ .+|. .|
T Consensus        67 ~~tveirLdq--------N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I-~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F  136 (498)
T KOG4237|consen   67 PETVEIRLDQ--------NQISSIPPGAFKTLHRLRRLDLSKNNISFI-APDAFKGLASLLSLVLYGNNKIT-DLPKGAF  136 (498)
T ss_pred             CcceEEEecc--------CCcccCChhhccchhhhceecccccchhhc-ChHhhhhhHhhhHHHhhcCCchh-hhhhhHh
Confidence            5678888888        688877788999999999999999999987 899999999987766555 8887 3333 34


Q ss_pred             CCCCCCcEEEccCC
Q 044082          128 GNLTNLQSLNLGYN  141 (243)
Q Consensus       128 ~~l~~L~~L~l~~n  141 (243)
                      .++..++-|.+.-|
T Consensus       137 ~gL~slqrLllNan  150 (498)
T KOG4237|consen  137 GGLSSLQRLLLNAN  150 (498)
T ss_pred             hhHHHHHHHhcChh
Confidence            44444444443333

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.42  E-value=3.4e-14  Score=126.23  Aligned_cols=181  Identities=26%  Similarity=0.310  Sum_probs=112.3

Q ss_pred             CCceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCC---------------------CcchhhcCCC
Q 044082           49 TGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGN---------------------PIPEFIGFFT  107 (243)
Q Consensus        49 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------------~~~~~~~~l~  107 (243)
                      ...++.+|++.+        .+++ +|..++.+.+|+.++...|.++..                     .+|+....++
T Consensus       240 p~nl~~~dis~n--------~l~~-lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~  310 (1081)
T KOG0618|consen  240 PLNLQYLDISHN--------NLSN-LPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLK  310 (1081)
T ss_pred             cccceeeecchh--------hhhc-chHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccc
Confidence            356677777773        4443 446666666666666666665431                     1344445566


Q ss_pred             CCcEEecCCccccccCCcC-C-------------------------CCCCCCcEEEccCCccccCCccccCCCCCCCEEE
Q 044082          108 KLRFLDLSLANFSGRIPYQ-L-------------------------GNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLD  161 (243)
Q Consensus       108 ~L~~L~l~~~~~~~~~~~~-l-------------------------~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  161 (243)
                      +|++|++..|.+. .+|.. +                         ..++.|+.|.+.+|+++......+.++.+|++|+
T Consensus       311 sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLh  389 (1081)
T KOG0618|consen  311 SLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLH  389 (1081)
T ss_pred             eeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeee
Confidence            6666666666554 21110 0                         0123345555555555554444466778899999


Q ss_pred             cCCccccCCcchHHHhhccccccccccccccCCCCCC-------------------CCcccccCCCCCcEEECCCCcccc
Q 044082          162 LDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINR-------------------PSLSSMNSSTSLALLDLSSCGLSN  222 (243)
Q Consensus       162 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-------------------~~~~~~~~~~~L~~L~L~~n~i~~  222 (243)
                      +++|.+..+|+  ..+.++..|++|+|++|+++.++.                   ..+.+..+ +.|+.+|++.|+++.
T Consensus       390 LsyNrL~~fpa--s~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l-~qL~~lDlS~N~L~~  466 (1081)
T KOG0618|consen  390 LSYNRLNSFPA--SKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQL-PQLKVLDLSCNNLSE  466 (1081)
T ss_pred             ecccccccCCH--HHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhhhc-CcceEEecccchhhh
Confidence            99999998876  578888999999999998875421                   01244455 888999999998874


Q ss_pred             ccchhHHhhhccCceeeCCCC
Q 044082          223 SAYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       223 ~~~~~l~~l~~~L~~L~l~~N  243 (243)
                      -........++ |++||++||
T Consensus       467 ~~l~~~~p~p~-LkyLdlSGN  486 (1081)
T KOG0618|consen  467 VTLPEALPSPN-LKYLDLSGN  486 (1081)
T ss_pred             hhhhhhCCCcc-cceeeccCC
Confidence            32221222255 999999987

>PLN03210 Resistant to P

Probab=99.41  E-value=2.2e-12  Score=123.00  Aligned_cols=34  Identities=35%  Similarity=0.539  Sum_probs=25.2

Q ss_pred             CCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082          208 TSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       208 ~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N  243 (243)
                      .+|+.|++++|.|+ .+|.++..+++ |+.|++++|
T Consensus       846 ~nL~~L~Ls~n~i~-~iP~si~~l~~-L~~L~L~~C  879 (1153)
T PLN03210        846 TNISDLNLSRTGIE-EVPWWIEKFSN-LSFLDMNGC  879 (1153)
T ss_pred             cccCEeECCCCCCc-cChHHHhcCCC-CCEEECCCC
Confidence            46777777777777 57777888877 888877653

syringae 6; Provisional

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.40  E-value=2.3e-14  Score=127.33  Aligned_cols=148  Identities=25%  Similarity=0.267  Sum_probs=106.0

Q ss_pred             CCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCc-CCCCCCCCcEEEccCCccccCCccccCCCCCCCEE
Q 044082           82 QHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPY-QLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQL  160 (243)
Q Consensus        82 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  160 (243)
                      ..|+.|++.+|.++.. .-+.+..+++|+.|++++|.+. .+|. .+.+++.|++|++++|+++ .+|..+..+..|++|
T Consensus       359 ~~Lq~LylanN~Ltd~-c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL  435 (1081)
T KOG0618|consen  359 AALQELYLANNHLTDS-CFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTL  435 (1081)
T ss_pred             HHHHHHHHhcCccccc-chhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHH
Confidence            3455566666666665 4445667888888888888887 5554 5778888888888888887 456777888888888


Q ss_pred             EcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCceeeC
Q 044082          161 DLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDL  240 (243)
Q Consensus       161 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l  240 (243)
                      ...+|.+...|    .+..++.|+.++++.|.++....  ...... ++|++||+++|.-...--+.+..+.. +..+++
T Consensus       436 ~ahsN~l~~fP----e~~~l~qL~~lDlS~N~L~~~~l--~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~l~~-l~~~~i  507 (1081)
T KOG0618|consen  436 RAHSNQLLSFP----ELAQLPQLKVLDLSCNNLSEVTL--PEALPS-PNLKYLDLSGNTRLVFDHKTLKVLKS-LSQMDI  507 (1081)
T ss_pred             hhcCCceeech----hhhhcCcceEEecccchhhhhhh--hhhCCC-cccceeeccCCcccccchhhhHHhhh-hhheec
Confidence            88888887776    46678899999999999887654  444555 89999999999743223334444444 444443

>PLN03210 Resistant to P

Probab=99.40  E-value=2.5e-12  Score=122.73  Aligned_cols=89  Identities=30%  Similarity=0.272  Sum_probs=43.5

Q ss_pred             hccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCC
Q 044082           78 LLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKL  157 (243)
Q Consensus        78 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  157 (243)
                      ++.+++|+.|++++|..... +|..+..+++|+.|++++|.....+|..+ .+++|++|++++|......|..   ..+|
T Consensus       653 ls~l~~Le~L~L~~c~~L~~-lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL  727 (1153)
T PLN03210        653 LSMATNLETLKLSDCSSLVE-LPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNI  727 (1153)
T ss_pred             cccCCcccEEEecCCCCccc-cchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCc
Confidence            44555555555555543333 55555555555555555543333444433 4555555555555433233321   2345


Q ss_pred             CEEEcCCccccCCc
Q 044082          158 TQLDLDFVDLSEAS  171 (243)
Q Consensus       158 ~~L~l~~n~l~~~~  171 (243)
                      +.|++.+|.+...|
T Consensus       728 ~~L~L~~n~i~~lP  741 (1153)
T PLN03210        728 SWLDLDETAIEEFP  741 (1153)
T ss_pred             CeeecCCCcccccc
Confidence            55666666555443

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.39  E-value=1.2e-12  Score=118.03  Aligned_cols=34  Identities=24%  Similarity=0.242  Sum_probs=26.5

Q ss_pred             CCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082          208 TSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       208 ~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N  243 (243)
                      .+|+.|++++|+|+ .+|..+..++. |+.|++++|
T Consensus       422 ~~L~~L~Ls~NqLt-~LP~sl~~L~~-L~~LdLs~N  455 (788)
T PRK15387        422 SGLLSLSVYRNQLT-RLPESLIHLSS-ETTVNLEGN  455 (788)
T ss_pred             hhhhhhhhccCccc-ccChHHhhccC-CCeEECCCC
Confidence            35666777777777 67888888888 899998887

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.38  E-value=2.8e-12  Score=116.04  Aligned_cols=162  Identities=22%  Similarity=0.264  Sum_probs=94.1

Q ss_pred             ceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCC
Q 044082           51 HVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNL  130 (243)
Q Consensus        51 ~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l  130 (243)
                      .++.|+|++        |.++ .+|..+.  .+|+.|++++|.++.  +|..+.  .+|+.|++++|.+. .+|..+.  
T Consensus       200 ~L~~L~Ls~--------N~Lt-sLP~~l~--~nL~~L~Ls~N~Lts--LP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--  261 (754)
T PRK15370        200 QITTLILDN--------NELK-SLPENLQ--GNIKTLYANSNQLTS--IPATLP--DTIQEMELSINRIT-ELPERLP--  261 (754)
T ss_pred             CCcEEEecC--------CCCC-cCChhhc--cCCCEEECCCCcccc--CChhhh--ccccEEECcCCccC-cCChhHh--
Confidence            455555555        4555 3444333  467777777777765  555442  35777777777766 5555442  


Q ss_pred             CCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcc-hHHHh---------------hccccccccccccccCC
Q 044082          131 TNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASD-WLQVI---------------TSLASLRDLYLASSTLP  194 (243)
Q Consensus       131 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~---------------~~l~~L~~L~l~~n~~~  194 (243)
                      .+|+.|++++|.++. +|..+.  .+|+.|++++|.++..|. ++..+               ...++|+.|++++|.++
T Consensus       262 s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt  338 (754)
T PRK15370        262 SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALT  338 (754)
T ss_pred             CCCCEEECcCCccCc-cccccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCccc
Confidence            357777777777763 454443  467777777777766542 11000               01134555555555555


Q ss_pred             CCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082          195 SINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       195 ~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N  243 (243)
                      +++.   .+   .++|+.|++++|+|+ .+|..+.  +. |++|++++|
T Consensus       339 ~LP~---~l---~~sL~~L~Ls~N~L~-~LP~~lp--~~-L~~LdLs~N  377 (754)
T PRK15370        339 SLPA---SL---PPELQVLDVSKNQIT-VLPETLP--PT-ITTLDVSRN  377 (754)
T ss_pred             cCCh---hh---cCcccEEECCCCCCC-cCChhhc--CC-cCEEECCCC
Confidence            4322   11   157888888888887 4665542  45 888888876

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.37  E-value=2.4e-14  Score=121.39  Aligned_cols=162  Identities=27%  Similarity=0.281  Sum_probs=139.0

Q ss_pred             CCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCcccc
Q 044082           66 PNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYV  145 (243)
Q Consensus        66 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~  145 (243)
                      ..|.+. ++|..+..+-.|+.+.++.|.+..  +|..++.+..|.+++++.|.+. .+|..+..++ |+.|.+++|+++ 
T Consensus        83 srNR~~-elp~~~~~f~~Le~liLy~n~~r~--ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-  156 (722)
T KOG0532|consen   83 SRNRFS-ELPEEACAFVSLESLILYHNCIRT--IPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-  156 (722)
T ss_pred             cccccc-cCchHHHHHHHHHHHHHHhcccee--cchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-
Confidence            335655 688888888889999998888876  7889999999999999999999 8888887776 999999999998 


Q ss_pred             CCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccc
Q 044082          146 SKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAY  225 (243)
Q Consensus       146 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~  225 (243)
                      .+|..++...+|..|+.+.|.+...+.   .+..+.+|+.|.+..|.+...++   .+..+  .|..||+++|+|+ .+|
T Consensus       157 ~lp~~ig~~~tl~~ld~s~nei~slps---ql~~l~slr~l~vrRn~l~~lp~---El~~L--pLi~lDfScNkis-~iP  227 (722)
T KOG0532|consen  157 SLPEEIGLLPTLAHLDVSKNEIQSLPS---QLGYLTSLRDLNVRRNHLEDLPE---ELCSL--PLIRLDFSCNKIS-YLP  227 (722)
T ss_pred             cCCcccccchhHHHhhhhhhhhhhchH---HhhhHHHHHHHHHhhhhhhhCCH---HHhCC--ceeeeecccCcee-ecc
Confidence            467778888899999999999999876   88899999999999999887654   55544  6899999999998 799


Q ss_pred             hhHHhhhccCceeeCCCC
Q 044082          226 HWLFKISSNLLALDLNSN  243 (243)
Q Consensus       226 ~~l~~l~~~L~~L~l~~N  243 (243)
                      -.|.++.+ |++|-|.+|
T Consensus       228 v~fr~m~~-Lq~l~LenN  244 (722)
T KOG0532|consen  228 VDFRKMRH-LQVLQLENN  244 (722)
T ss_pred             hhhhhhhh-heeeeeccC
Confidence            99999999 999998877

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.35  E-value=4e-12  Score=115.07  Aligned_cols=159  Identities=21%  Similarity=0.248  Sum_probs=99.4

Q ss_pred             CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCC
Q 044082           50 GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN  129 (243)
Q Consensus        50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~  129 (243)
                      .+++.|++++|        .++ .+|..+.  .+|+.|++++|.+..  +|..+.  .+|++|++++|.+. .+|..+. 
T Consensus       220 ~nL~~L~Ls~N--------~Lt-sLP~~l~--~~L~~L~Ls~N~L~~--LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~-  282 (754)
T PRK15370        220 GNIKTLYANSN--------QLT-SIPATLP--DTIQEMELSINRITE--LPERLP--SALQSLDLFHNKIS-CLPENLP-  282 (754)
T ss_pred             cCCCEEECCCC--------ccc-cCChhhh--ccccEEECcCCccCc--CChhHh--CCCCEEECcCCccC-ccccccC-
Confidence            46788888884        444 2343332  346666666666553  444432  35566666666555 3444332 


Q ss_pred             CCCCcEEEccCCccccC--------------------CccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccc
Q 044082          130 LTNLQSLNLGYNSLYVS--------------------KFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLA  189 (243)
Q Consensus       130 l~~L~~L~l~~n~l~~~--------------------~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~  189 (243)
                       ++|++|++++|.++..                    +|..+  .++|+.|++++|.++.+|.   .+  .++|+.|+++
T Consensus       283 -~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~Lt~LP~---~l--~~sL~~L~Ls  354 (754)
T PRK15370        283 -EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETL--PPGLKTLEAGENALTSLPA---SL--PPELQVLDVS  354 (754)
T ss_pred             -CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccc--cccceeccccCCccccCCh---hh--cCcccEEECC
Confidence             3455555555554431                    12212  2568888888888877754   33  3689999999


Q ss_pred             cccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082          190 SSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       190 ~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N  243 (243)
                      +|+++.++.   .+  . ++|+.|++++|.++ .+|..+..  . |+.|++++|
T Consensus       355 ~N~L~~LP~---~l--p-~~L~~LdLs~N~Lt-~LP~~l~~--s-L~~LdLs~N  398 (754)
T PRK15370        355 KNQITVLPE---TL--P-PTITTLDVSRNALT-NLPENLPA--A-LQIMQASRN  398 (754)
T ss_pred             CCCCCcCCh---hh--c-CCcCEEECCCCcCC-CCCHhHHH--H-HHHHhhccC
Confidence            999986533   22  2 68999999999999 57776543  4 888888876

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.30  E-value=1.6e-13  Score=111.80  Aligned_cols=179  Identities=20%  Similarity=0.158  Sum_probs=117.8

Q ss_pred             CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccC-CCCCCC-----------------------CcchhhcC
Q 044082           50 GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSV-NDFLGN-----------------------PIPEFIGF  105 (243)
Q Consensus        50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~-----------------------~~~~~~~~  105 (243)
                      .++++|||+.|        +|+..-|.+|.+++.+..|-+.+ |+|+..                       ...+.+..
T Consensus        91 ~~LRrLdLS~N--------~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~d  162 (498)
T KOG4237|consen   91 HRLRRLDLSKN--------NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRD  162 (498)
T ss_pred             hhhceeccccc--------chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHH
Confidence            68899999995        66655566666666655543333 555542                       03344556


Q ss_pred             CCCCcEEecCCccccccCCc-CCCCCCCCcEEEccCCc------------------------------------------
Q 044082          106 FTKLRFLDLSLANFSGRIPY-QLGNLTNLQSLNLGYNS------------------------------------------  142 (243)
Q Consensus       106 l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~n~------------------------------------------  142 (243)
                      ++++..|.+..|.+. .++. .+..+..++++.+..|.                                          
T Consensus       163 L~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a  241 (498)
T KOG4237|consen  163 LPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDA  241 (498)
T ss_pred             hhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccch
Confidence            666666666666665 3333 45555666666555544                                          


Q ss_pred             -------------------cccCCc-cccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcc
Q 044082          143 -------------------LYVSKF-GWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLS  202 (243)
Q Consensus       143 -------------------l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  202 (243)
                                         .....| ..|..+++|+.|++++|.++.+.+  .++.....+++|.|..|++..+..  ..
T Consensus       242 ~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~--~aFe~~a~l~eL~L~~N~l~~v~~--~~  317 (498)
T KOG4237|consen  242 RKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIED--GAFEGAAELQELYLTRNKLEFVSS--GM  317 (498)
T ss_pred             hhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhh--hhhcchhhhhhhhcCcchHHHHHH--Hh
Confidence                               000011 125566788888888888888843  477888888888888888876655  45


Q ss_pred             cccCCCCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082          203 SMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       203 ~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N  243 (243)
                      +..+ ..|++|+|.+|+|+...|..|..+.. |.+|.+-.|
T Consensus       318 f~~l-s~L~tL~L~~N~it~~~~~aF~~~~~-l~~l~l~~N  356 (498)
T KOG4237|consen  318 FQGL-SGLKTLSLYDNQITTVAPGAFQTLFS-LSTLNLLSN  356 (498)
T ss_pred             hhcc-ccceeeeecCCeeEEEecccccccce-eeeeehccC
Confidence            5555 88899999999998767777777777 888877655

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.28  E-value=1.1e-12  Score=98.30  Aligned_cols=86  Identities=29%  Similarity=0.390  Sum_probs=20.0

Q ss_pred             CCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccc
Q 044082          106 FTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRD  185 (243)
Q Consensus       106 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~  185 (243)
                      +.+|+.|++++|.+. .+. .+..++.|++|++++|+++...+.....+++|+.|++++|.|.+..+ ...+..+++|+.
T Consensus        41 l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~-l~~L~~l~~L~~  117 (175)
T PF14580_consen   41 LDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNE-LEPLSSLPKLRV  117 (175)
T ss_dssp             -TT--EEE-TTS--S---T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCC-CGGGGG-TT--E
T ss_pred             hcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHH-hHHHHcCCCcce
Confidence            344444444444444 221 23334444444444444443211101123444444444444444322 123334444444


Q ss_pred             cccccccCC
Q 044082          186 LYLASSTLP  194 (243)
Q Consensus       186 L~l~~n~~~  194 (243)
                      |++.+|.+.
T Consensus       118 L~L~~NPv~  126 (175)
T PF14580_consen  118 LSLEGNPVC  126 (175)
T ss_dssp             EE-TT-GGG
T ss_pred             eeccCCccc
Confidence            444444433

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.27  E-value=1e-11  Score=93.02  Aligned_cols=126  Identities=29%  Similarity=0.366  Sum_probs=54.1

Q ss_pred             CCCCCcEEecCCccccccCCcCCC-CCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHh-hcccc
Q 044082          105 FFTKLRFLDLSLANFSGRIPYQLG-NLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVI-TSLAS  182 (243)
Q Consensus       105 ~l~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~l~~  182 (243)
                      +..++++|++++|.+. .+. .++ .+.+|+.|++++|.++..  +.+..++.|++|++++|.|+....   .+ ..+++
T Consensus        17 n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~---~l~~~lp~   89 (175)
T PF14580_consen   17 NPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISE---GLDKNLPN   89 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CH---HHHHH-TT
T ss_pred             cccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcccc---chHHhCCc
Confidence            4457889999999888 433 354 578999999999999864  347889999999999999999853   33 46899


Q ss_pred             ccccccccccCCCCCCCCcccccCCCCCcEEECCCCcccccc---chhHHhhhccCceeeC
Q 044082          183 LRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSA---YHWLFKISSNLLALDL  240 (243)
Q Consensus       183 L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~---~~~l~~l~~~L~~L~l  240 (243)
                      |++|.+++|++...... ..+..+ ++|+.|++.+|.++...   ...+..+|+ |+.||-
T Consensus        90 L~~L~L~~N~I~~l~~l-~~L~~l-~~L~~L~L~~NPv~~~~~YR~~vi~~lP~-Lk~LD~  147 (175)
T PF14580_consen   90 LQELYLSNNKISDLNEL-EPLSSL-PKLRVLSLEGNPVCEKKNYRLFVIYKLPS-LKVLDG  147 (175)
T ss_dssp             --EEE-TTS---SCCCC-GGGGG--TT--EEE-TT-GGGGSTTHHHHHHHH-TT--SEETT
T ss_pred             CCEEECcCCcCCChHHh-HHHHcC-CCcceeeccCCcccchhhHHHHHHHHcCh-hheeCC
Confidence            99999999999876542 345555 99999999999998532   235788898 999885

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.26  E-value=4e-11  Score=108.39  Aligned_cols=126  Identities=20%  Similarity=0.139  Sum_probs=83.4

Q ss_pred             CCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEc
Q 044082           83 HLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDL  162 (243)
Q Consensus        83 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  162 (243)
                      +|++|++++|.++.  +|..   ..+|+.|++++|.+. .+|..   ..+|+.|++++|.++. +|..   .++|+.|++
T Consensus       343 ~Lq~LdLS~N~Ls~--LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdL  409 (788)
T PRK15387        343 GLQELSVSDNQLAS--LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMV  409 (788)
T ss_pred             ccceEecCCCccCC--CCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCcccC-CCCc---ccCCCEEEc
Confidence            45555555555544  3322   134445555555555 33432   2457788888888774 3432   357888888


Q ss_pred             CCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhh
Q 044082          163 DFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKI  231 (243)
Q Consensus       163 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l  231 (243)
                      ++|.+..+|.+      ..+|+.|++++|+++.+ |  ..+..+ ++|+.|+|++|.+++..+..+..+
T Consensus       410 S~N~LssIP~l------~~~L~~L~Ls~NqLt~L-P--~sl~~L-~~L~~LdLs~N~Ls~~~~~~L~~l  468 (788)
T PRK15387        410 SGNRLTSLPML------PSGLLSLSVYRNQLTRL-P--ESLIHL-SSETTVNLEGNPLSERTLQALREI  468 (788)
T ss_pred             cCCcCCCCCcc------hhhhhhhhhccCccccc-C--hHHhhc-cCCCeEECCCCCCCchHHHHHHHH
Confidence            88888877642      23678899999999865 4  466777 999999999999998888777554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.18  E-value=2e-11  Score=104.08  Aligned_cols=170  Identities=31%  Similarity=0.367  Sum_probs=98.5

Q ss_pred             ceEEEecCCCCCCCCCCCCcccccchhhccCC-CCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCC
Q 044082           51 HVIMLNLKYKVDPVCPNRPLRGNINSSLLELQ-HLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN  129 (243)
Q Consensus        51 ~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~  129 (243)
                      .++.+++.+        |.+. .+++....+. +|+.|++++|.+..  +|..+..++.|+.|+++.|.+. .+|...+.
T Consensus       117 ~l~~L~l~~--------n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~--l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~  184 (394)
T COG4886         117 NLTSLDLDN--------NNIT-DIPPLIGLLKSNLKELDLSDNKIES--LPSPLRNLPNLKNLDLSFNDLS-DLPKLLSN  184 (394)
T ss_pred             ceeEEecCC--------cccc-cCccccccchhhcccccccccchhh--hhhhhhccccccccccCCchhh-hhhhhhhh
Confidence            345555555        3433 3444445553 66666666666655  4455666666666666666666 44444445


Q ss_pred             CCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCC
Q 044082          130 LTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTS  209 (243)
Q Consensus       130 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~  209 (243)
                      .+.|+.|++++|++.. +|........|+.+.+++|.+...+.   .+..+.++..+.+.+|++...+   ..+... ++
T Consensus       185 ~~~L~~L~ls~N~i~~-l~~~~~~~~~L~~l~~~~N~~~~~~~---~~~~~~~l~~l~l~~n~~~~~~---~~~~~l-~~  256 (394)
T COG4886         185 LSNLNNLDLSGNKISD-LPPEIELLSALEELDLSNNSIIELLS---SLSNLKNLSGLELSNNKLEDLP---ESIGNL-SN  256 (394)
T ss_pred             hhhhhheeccCCcccc-CchhhhhhhhhhhhhhcCCcceecch---hhhhcccccccccCCceeeecc---chhccc-cc
Confidence            5666666666666653 23323334446666666664333322   4455555666666666554421   234444 67


Q ss_pred             CcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082          210 LALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       210 L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N  243 (243)
                      ++.|++++|.++ .++. ++.+.. ++.|++++|
T Consensus       257 l~~L~~s~n~i~-~i~~-~~~~~~-l~~L~~s~n  287 (394)
T COG4886         257 LETLDLSNNQIS-SISS-LGSLTN-LRELDLSGN  287 (394)
T ss_pred             cceecccccccc-cccc-ccccCc-cCEEeccCc
Confidence            888888888888 4544 777777 888888764

>PLN03150 hypothetical protein; Provisional

Probab=99.11  E-value=2.2e-10  Score=102.81  Aligned_cols=107  Identities=28%  Similarity=0.342  Sum_probs=68.3

Q ss_pred             CcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcC
Q 044082           84 LNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLD  163 (243)
Q Consensus        84 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  163 (243)
                      ++.|+|++|.+.+. +|..+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+++.+|+.++.+++|++|+++
T Consensus       420 v~~L~L~~n~L~g~-ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRGF-IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEECCCCCcccc-CCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            55666677766665 66666677777777777777766666666667777777777777766666666667777777777


Q ss_pred             CccccCC-cchHHHhhc-cccccccccccccCC
Q 044082          164 FVDLSEA-SDWLQVITS-LASLRDLYLASSTLP  194 (243)
Q Consensus       164 ~n~l~~~-~~~~~~~~~-l~~L~~L~l~~n~~~  194 (243)
                      +|.+.+. |.   .+.. ..++..+++.+|...
T Consensus       499 ~N~l~g~iP~---~l~~~~~~~~~l~~~~N~~l  528 (623)
T PLN03150        499 GNSLSGRVPA---ALGGRLLHRASFNFTDNAGL  528 (623)
T ss_pred             CCcccccCCh---HHhhccccCceEEecCCccc
Confidence            7766654 33   3332 234455566665443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.11  E-value=1.1e-11  Score=102.45  Aligned_cols=178  Identities=22%  Similarity=0.236  Sum_probs=117.3

Q ss_pred             CCceEEEecCCCCCCCCCCCCccc--ccchhhccCCCCcEEEccCCCCCCCCcc-hhhcCCCCCcEEecCCcccccc-CC
Q 044082           49 TGHVIMLNLKYKVDPVCPNRPLRG--NINSSLLELQHLNYLDLSVNDFLGNPIP-EFIGFFTKLRFLDLSLANFSGR-IP  124 (243)
Q Consensus        49 ~~~l~~L~l~~~~~~~~~~~~~~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~~~~~~~-~~  124 (243)
                      .++|+.|||+.|        -+..  .+......+++|+.|+++.|.+... .. ..-..+++|+.|.++.|.++.. +.
T Consensus       145 ~~~v~~LdLS~N--------L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~-~~s~~~~~l~~lK~L~l~~CGls~k~V~  215 (505)
T KOG3207|consen  145 LPNVRDLDLSRN--------LFHNWFPVLKIAEQLPSLENLNLSSNRLSNF-ISSNTTLLLSHLKQLVLNSCGLSWKDVQ  215 (505)
T ss_pred             CCcceeecchhh--------hHHhHHHHHHHHHhcccchhcccccccccCC-ccccchhhhhhhheEEeccCCCCHHHHH
Confidence            357888888883        4332  2334556788888888888887542 11 1122567788888888887732 22


Q ss_pred             cCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCccc-
Q 044082          125 YQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSS-  203 (243)
Q Consensus       125 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-  203 (243)
                      ..+..+|+|+.|++..|............+..|+.|++++|.+.+.+. ......++.|+.|+++.+.+..+..  +.. 
T Consensus       216 ~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~-~~~~~~l~~L~~Lnls~tgi~si~~--~d~~  292 (505)
T KOG3207|consen  216 WILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQ-GYKVGTLPGLNQLNLSSTGIASIAE--PDVE  292 (505)
T ss_pred             HHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccc-ccccccccchhhhhccccCcchhcC--CCcc
Confidence            234567888888888884221212223345789999999999988864 2367788999999999998887654  333 


Q ss_pred             ----ccCCCCCcEEECCCCccccccc--hhHHhhhccCceeeC
Q 044082          204 ----MNSSTSLALLDLSSCGLSNSAY--HWLFKISSNLLALDL  240 (243)
Q Consensus       204 ----~~~~~~L~~L~L~~n~i~~~~~--~~l~~l~~~L~~L~l  240 (243)
                          ...+++|+.|++..|+|.+ .+  ..+..+++ |+.|.+
T Consensus       293 s~~kt~~f~kL~~L~i~~N~I~~-w~sl~~l~~l~n-lk~l~~  333 (505)
T KOG3207|consen  293 SLDKTHTFPKLEYLNISENNIRD-WRSLNHLRTLEN-LKHLRI  333 (505)
T ss_pred             chhhhcccccceeeecccCcccc-ccccchhhccch-hhhhhc
Confidence                3445899999999999963 32  23444444 555543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.11  E-value=6.5e-12  Score=99.56  Aligned_cols=136  Identities=30%  Similarity=0.293  Sum_probs=104.4

Q ss_pred             hhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCC
Q 044082           76 SSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLN  155 (243)
Q Consensus        76 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~  155 (243)
                      ..+-.++.|+.+|+++|.|+.  +..++.-.++++.|++++|.+. .+.. ++.+++|++||+++|.++.. ..+-..+.
T Consensus       278 ~~~dTWq~LtelDLS~N~I~~--iDESvKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls~~-~Gwh~KLG  352 (490)
T KOG1259|consen  278 VSADTWQELTELDLSGNLITQ--IDESVKLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLAEC-VGWHLKLG  352 (490)
T ss_pred             EecchHhhhhhccccccchhh--hhhhhhhccceeEEecccccee-eehh-hhhcccceEeecccchhHhh-hhhHhhhc
Confidence            344456778889999998876  6677777889999999999887 4333 77889999999999987643 34445667


Q ss_pred             CCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCcccc
Q 044082          156 KLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSN  222 (243)
Q Consensus       156 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~  222 (243)
                      ++++|.++.|.+.+..    .+.++-+|..|++++|++...... ..++.+ +-|+++.|.+|.+.+
T Consensus       353 NIKtL~La~N~iE~LS----GL~KLYSLvnLDl~~N~Ie~ldeV-~~IG~L-PCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  353 NIKTLKLAQNKIETLS----GLRKLYSLVNLDLSSNQIEELDEV-NHIGNL-PCLETLRLTGNPLAG  413 (490)
T ss_pred             CEeeeehhhhhHhhhh----hhHhhhhheeccccccchhhHHHh-cccccc-cHHHHHhhcCCCccc
Confidence            8888899998887773    567778888999999988765431 356777 888999999998874

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.07  E-value=2.5e-11  Score=97.69  Aligned_cols=183  Identities=19%  Similarity=0.138  Sum_probs=111.7

Q ss_pred             ceEEEecCCCCCCCCCCCCcccccc----hhhccCCCCcEEEccCCCCCCCCcc-------------hhhcCCCCCcEEe
Q 044082           51 HVIMLNLKYKVDPVCPNRPLRGNIN----SSLLELQHLNYLDLSVNDFLGNPIP-------------EFIGFFTKLRFLD  113 (243)
Q Consensus        51 ~l~~L~l~~~~~~~~~~~~~~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~-------------~~~~~l~~L~~L~  113 (243)
                      +++.||||+|        -|.-..+    ..++....|+.|.|.+|.+... --             .....-++|+++.
T Consensus        93 ~L~~ldLSDN--------A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~-ag~~l~~al~~l~~~kk~~~~~~Lrv~i  163 (382)
T KOG1909|consen   93 KLQKLDLSDN--------AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPE-AGGRLGRALFELAVNKKAASKPKLRVFI  163 (382)
T ss_pred             ceeEeecccc--------ccCccchHHHHHHHHhccCHHHHhhhcCCCChh-HHHHHHHHHHHHHHHhccCCCcceEEEE
Confidence            5666666663        3332222    2334456666666666665432 11             1122344566666


Q ss_pred             cCCccccccC----CcCCCCCCCCcEEEccCCccccCC----ccccCCCCCCCEEEcCCccccCC--cchHHHhhccccc
Q 044082          114 LSLANFSGRI----PYQLGNLTNLQSLNLGYNSLYVSK----FGWLSHLNKLTQLDLDFVDLSEA--SDWLQVITSLASL  183 (243)
Q Consensus       114 l~~~~~~~~~----~~~l~~l~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~l~~n~l~~~--~~~~~~~~~l~~L  183 (243)
                      .++|.+....    ...++..+.|+.+.++.|.+....    ...+..+++|+.|++++|.++..  -.+.+.+..++.|
T Consensus       164 ~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L  243 (382)
T KOG1909|consen  164 CGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHL  243 (382)
T ss_pred             eeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchh
Confidence            6666655221    123445566777777777665432    24466788899999999988765  3356677888889


Q ss_pred             cccccccccCCCCCCC--CcccccCCCCCcEEECCCCcccccc----chhHHhhhccCceeeCCCC
Q 044082          184 RDLYLASSTLPSINRP--SLSSMNSSTSLALLDLSSCGLSNSA----YHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       184 ~~L~l~~n~~~~~~~~--~~~~~~~~~~L~~L~L~~n~i~~~~----~~~l~~l~~~L~~L~l~~N  243 (243)
                      +.|++++|.+......  ...+....++|+.+.+.+|.|+...    ...+...+. |..|++++|
T Consensus       244 ~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~d-L~kLnLngN  308 (382)
T KOG1909|consen  244 RELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPD-LEKLNLNGN  308 (382)
T ss_pred             eeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchh-hHHhcCCcc
Confidence            9999999888754330  0122223378999999999887542    234455666 888888877

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.01  E-value=1e-10  Score=94.26  Aligned_cols=165  Identities=21%  Similarity=0.192  Sum_probs=116.6

Q ss_pred             hhccCCCCcEEEccCCCCCCCC---cchhhcCCCCCcEEecCCcccccc-------------CCcCCCCCCCCcEEEccC
Q 044082           77 SLLELQHLNYLDLSVNDFLGNP---IPEFIGFFTKLRFLDLSLANFSGR-------------IPYQLGNLTNLQSLNLGY  140 (243)
Q Consensus        77 ~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~l~~~~~~~~-------------~~~~l~~l~~L~~L~l~~  140 (243)
                      .+.+.++|++++||+|.+....   +...+.++..|++|.+.+|.+...             .....+.-+.|+.+..++
T Consensus        87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r  166 (382)
T KOG1909|consen   87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR  166 (382)
T ss_pred             HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence            3345678999999999886551   223456788899999999987622             222345668899999999


Q ss_pred             CccccCCc----cccCCCCCCCEEEcCCccccCC--cchHHHhhccccccccccccccCCCCCC--CCcccccCCCCCcE
Q 044082          141 NSLYVSKF----GWLSHLNKLTQLDLDFVDLSEA--SDWLQVITSLASLRDLYLASSTLPSINR--PSLSSMNSSTSLAL  212 (243)
Q Consensus       141 n~l~~~~~----~~l~~l~~L~~L~l~~n~l~~~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~~~~~~L~~  212 (243)
                      |++.....    ..+...+.|+.+.+..|.|...  ..+...+..++.|+.|++.+|.|+....  ....+..+ +.|+.
T Consensus       167 Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~-~~L~E  245 (382)
T KOG1909|consen  167 NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSW-PHLRE  245 (382)
T ss_pred             cccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhccc-chhee
Confidence            98764322    3456678899999999988655  2356678899999999999998875432  11233444 78999


Q ss_pred             EECCCCccccccchhHHh-----hhccCceeeCCCC
Q 044082          213 LDLSSCGLSNSAYHWLFK-----ISSNLLALDLNSN  243 (243)
Q Consensus       213 L~L~~n~i~~~~~~~l~~-----l~~~L~~L~l~~N  243 (243)
                      |++++|.+.......+.+     .|. |+.+.+++|
T Consensus       246 l~l~dcll~~~Ga~a~~~al~~~~p~-L~vl~l~gN  280 (382)
T KOG1909|consen  246 LNLGDCLLENEGAIAFVDALKESAPS-LEVLELAGN  280 (382)
T ss_pred             ecccccccccccHHHHHHHHhccCCC-CceeccCcc
Confidence            999999987655444432     355 888888876

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.98  E-value=9.5e-11  Score=93.03  Aligned_cols=135  Identities=24%  Similarity=0.219  Sum_probs=109.9

Q ss_pred             CCCceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCC
Q 044082           48 RTGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQL  127 (243)
Q Consensus        48 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l  127 (243)
                      .+..++.+|||+        |.|+ .+-+++.-++.++.|+++.|.+...   +.+..+++|+.||+++|.+. .+...-
T Consensus       282 TWq~LtelDLS~--------N~I~-~iDESvKL~Pkir~L~lS~N~i~~v---~nLa~L~~L~~LDLS~N~Ls-~~~Gwh  348 (490)
T KOG1259|consen  282 TWQELTELDLSG--------NLIT-QIDESVKLAPKLRRLILSQNRIRTV---QNLAELPQLQLLDLSGNLLA-ECVGWH  348 (490)
T ss_pred             hHhhhhhccccc--------cchh-hhhhhhhhccceeEEeccccceeee---hhhhhcccceEeecccchhH-hhhhhH
Confidence            345789999999        4555 4666778889999999999999763   44889999999999999988 444434


Q ss_pred             CCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCC
Q 044082          128 GNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINR  198 (243)
Q Consensus       128 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  198 (243)
                      -++.++++|.+++|.+...  +.+..+.+|.+|++.+|.|....+ ...+++++.|+++.|.+|.+.+.+.
T Consensus       349 ~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~lde-V~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  349 LKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDE-VNHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             hhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHH-hcccccccHHHHHhhcCCCccccch
Confidence            4678899999999988643  447788899999999999988854 3578999999999999999887653

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.98  E-value=8.9e-12  Score=106.06  Aligned_cols=148  Identities=28%  Similarity=0.260  Sum_probs=129.5

Q ss_pred             CCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEE
Q 044082           81 LQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQL  160 (243)
Q Consensus        81 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  160 (243)
                      +.--...|++.|++..  +|..++.+..|+.+.+..|.+. .+|..+..+..|.+|+++.|+++. +|..++.++ |+.|
T Consensus        74 ltdt~~aDlsrNR~~e--lp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~-lp~~lC~lp-Lkvl  148 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFSE--LPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSH-LPDGLCDLP-LKVL  148 (722)
T ss_pred             ccchhhhhcccccccc--CchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhc-CChhhhcCc-ceeE
Confidence            3445568999999877  7888999999999999999999 899999999999999999999984 566567666 9999


Q ss_pred             EcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCceeeC
Q 044082          161 DLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDL  240 (243)
Q Consensus       161 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l  240 (243)
                      -+++|+++..|+   .++...+|.+|+.+.|.+...+.   .++.+ .+|+.|.+..|++. .+|+.+..++  |..||+
T Consensus       149 i~sNNkl~~lp~---~ig~~~tl~~ld~s~nei~slps---ql~~l-~slr~l~vrRn~l~-~lp~El~~Lp--Li~lDf  218 (722)
T KOG0532|consen  149 IVSNNKLTSLPE---EIGLLPTLAHLDVSKNEIQSLPS---QLGYL-TSLRDLNVRRNHLE-DLPEELCSLP--LIRLDF  218 (722)
T ss_pred             EEecCccccCCc---ccccchhHHHhhhhhhhhhhchH---HhhhH-HHHHHHHHhhhhhh-hCCHHHhCCc--eeeeec
Confidence            999999999976   67788999999999999987765   77888 99999999999998 6888899887  999999


Q ss_pred             CCC
Q 044082          241 NSN  243 (243)
Q Consensus       241 ~~N  243 (243)
                      ++|
T Consensus       219 ScN  221 (722)
T KOG0532|consen  219 SCN  221 (722)
T ss_pred             ccC
Confidence            987

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.95  E-value=5.2e-10  Score=95.43  Aligned_cols=154  Identities=35%  Similarity=0.455  Sum_probs=123.0

Q ss_pred             hhccCCCCcEEEccCCCCCCCCcchhhcCCC-CCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCC
Q 044082           77 SLLELQHLNYLDLSVNDFLGNPIPEFIGFFT-KLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLN  155 (243)
Q Consensus        77 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~  155 (243)
                      .+..++.++.+++.+|.++.  ++.....+. +|+.|+++.|.+. .+|..+..++.|+.|++++|++... |...+..+
T Consensus       111 ~~~~~~~l~~L~l~~n~i~~--i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~l-~~~~~~~~  186 (394)
T COG4886         111 ELLELTNLTSLDLDNNNITD--IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDL-PKLLSNLS  186 (394)
T ss_pred             hhhcccceeEEecCCccccc--Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhhh-hhhhhhhh
Confidence            45666889999999999987  677777774 9999999999998 7767788899999999999999854 44344778


Q ss_pred             CCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccC
Q 044082          156 KLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNL  235 (243)
Q Consensus       156 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L  235 (243)
                      .|+.|++++|.+...+.   .......|+++.+++|.....+.   .+... .++..+.+.+|++. ..+..++.++. +
T Consensus       187 ~L~~L~ls~N~i~~l~~---~~~~~~~L~~l~~~~N~~~~~~~---~~~~~-~~l~~l~l~~n~~~-~~~~~~~~l~~-l  257 (394)
T COG4886         187 NLNNLDLSGNKISDLPP---EIELLSALEELDLSNNSIIELLS---SLSNL-KNLSGLELSNNKLE-DLPESIGNLSN-L  257 (394)
T ss_pred             hhhheeccCCccccCch---hhhhhhhhhhhhhcCCcceecch---hhhhc-ccccccccCCceee-eccchhccccc-c
Confidence            99999999999999975   44566679999999996433332   45555 78888889999988 45777888888 9


Q ss_pred             ceeeCCCC
Q 044082          236 LALDLNSN  243 (243)
Q Consensus       236 ~~L~l~~N  243 (243)
                      ++|++++|
T Consensus       258 ~~L~~s~n  265 (394)
T COG4886         258 ETLDLSNN  265 (394)
T ss_pred             ceeccccc
Confidence            99999876

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.90  E-value=1.9e-09  Score=66.71  Aligned_cols=59  Identities=34%  Similarity=0.372  Sum_probs=28.2

Q ss_pred             CCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCcc
Q 044082          108 KLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVD  166 (243)
Q Consensus       108 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  166 (243)
                      +|++|++++|.+....+..+..+++|++|++++|.++...+..|..+++|++|++++|.
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            34445555554443323344445555555555555544444444555555555555444

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.85  E-value=2.4e-09  Score=66.24  Aligned_cols=61  Identities=36%  Similarity=0.443  Sum_probs=42.4

Q ss_pred             CCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCcc
Q 044082           82 QHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSL  143 (243)
Q Consensus        82 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l  143 (243)
                      ++|++|++++|.+... .+..|..+++|++|++++|.+....+..+..+++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i-~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEI-PPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEE-CTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCcc-CHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4567777777777664 445667777777777777777755555677777777777777753

...

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.78  E-value=1.5e-09  Score=89.96  Aligned_cols=167  Identities=19%  Similarity=0.110  Sum_probs=115.5

Q ss_pred             CCCCceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcC
Q 044082           47 NRTGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQ  126 (243)
Q Consensus        47 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  126 (243)
                      ...++++.|+|+.|++....++..+       ..+++|+.|.++.|.++...+...+..+|+|+.|++..|.........
T Consensus       169 eqLp~Le~LNls~Nrl~~~~~s~~~-------~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~  241 (505)
T KOG3207|consen  169 EQLPSLENLNLSSNRLSNFISSNTT-------LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS  241 (505)
T ss_pred             HhcccchhcccccccccCCccccch-------hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch
Confidence            3468999999999644322222222       256789999999999986656677788999999999998532233333


Q ss_pred             CCCCCCCcEEEccCCccccC-CccccCCCCCCCEEEcCCccccCC--cc--hHHHhhccccccccccccccCCCCCCCCc
Q 044082          127 LGNLTNLQSLNLGYNSLYVS-KFGWLSHLNKLTQLDLDFVDLSEA--SD--WLQVITSLASLRDLYLASSTLPSINRPSL  201 (243)
Q Consensus       127 l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~--~~--~~~~~~~l~~L~~L~l~~n~~~~~~~~~~  201 (243)
                      ..-+..|+.|++++|.+-.. .....+.++.|+.|+++.+.+.++  ++  ...-....++|++|++..|++...... .
T Consensus       242 ~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl-~  320 (505)
T KOG3207|consen  242 TKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSL-N  320 (505)
T ss_pred             hhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccccccc-c
Confidence            44567799999998876532 234577888999999999998877  22  011135668999999999998765431 1


Q ss_pred             ccccCCCCCcEEECCCCcccc
Q 044082          202 SSMNSSTSLALLDLSSCGLSN  222 (243)
Q Consensus       202 ~~~~~~~~L~~L~L~~n~i~~  222 (243)
                      .+..+ ++|..+.+..|.++.
T Consensus       321 ~l~~l-~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  321 HLRTL-ENLKHLRITLNYLNK  340 (505)
T ss_pred             hhhcc-chhhhhhcccccccc
Confidence            22333 778888888887753

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.66  E-value=3.9e-08  Score=56.11  Aligned_cols=40  Identities=53%  Similarity=1.007  Sum_probs=29.9

Q ss_pred             HHHHHHHHHhhhccc-CCCCCCCCCCCCCC-CCCCcccceEEec
Q 044082            5 EKERQALLMFKQGLV-DDCGYLSSWGSDEG-RKDCCKWSGVQCS   46 (243)
Q Consensus         5 ~~~~~~l~~~~~~~~-~~~~~~~~w~~~~~-~~~~~~~~~~~c~   46 (243)
                      +.|++||++||+++. +|.+.+.+|..  . ..++|.|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~--~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNP--SSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--T--T--S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCC--cCCCCCeeeccEEeC
Confidence            579999999999996 67788899994  2 2799999999994

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.60  E-value=1.6e-08  Score=93.39  Aligned_cols=89  Identities=38%  Similarity=0.428  Sum_probs=73.2

Q ss_pred             hhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCC
Q 044082           76 SSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLN  155 (243)
Q Consensus        76 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~  155 (243)
                      ..|..++.|++||+++|.-.+. +|+.++++-+|++|+++++.+. .+|..++++..|.+|++..+.-....+.....+.
T Consensus       565 ~ff~~m~~LrVLDLs~~~~l~~-LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~  642 (889)
T KOG4658|consen  565 EFFRSLPLLRVLDLSGNSSLSK-LPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQ  642 (889)
T ss_pred             HHHhhCcceEEEECCCCCccCc-CChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcc
Confidence            3477799999999998876665 8999999999999999999998 8999999999999999988765444466566688


Q ss_pred             CCCEEEcCCcc
Q 044082          156 KLTQLDLDFVD  166 (243)
Q Consensus       156 ~L~~L~l~~n~  166 (243)
                      +|++|.+....
T Consensus       643 ~Lr~L~l~~s~  653 (889)
T KOG4658|consen  643 SLRVLRLPRSA  653 (889)
T ss_pred             cccEEEeeccc
Confidence            99999887655

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.58  E-value=5.4e-10  Score=88.60  Aligned_cols=179  Identities=23%  Similarity=0.213  Sum_probs=104.4

Q ss_pred             CceEEEecCCCCCCCCCCCCcc-cccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCcc-ccccCCc-C
Q 044082           50 GHVIMLNLKYKVDPVCPNRPLR-GNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLAN-FSGRIPY-Q  126 (243)
Q Consensus        50 ~~l~~L~l~~~~~~~~~~~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~-~  126 (243)
                      .+++.+||+..        .++ ......++.+.+|+.|.+.++.+... +...+++...|+.|+++.+. ++..... .
T Consensus       185 sRlq~lDLS~s--------~it~stl~~iLs~C~kLk~lSlEg~~LdD~-I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll  255 (419)
T KOG2120|consen  185 SRLQHLDLSNS--------VITVSTLHGILSQCSKLKNLSLEGLRLDDP-IVNTIAKNSNLVRLNLSMCSGFTENALQLL  255 (419)
T ss_pred             hhhHHhhcchh--------heeHHHHHHHHHHHHhhhhccccccccCcH-HHHHHhccccceeeccccccccchhHHHHH
Confidence            46788888874        444 34455667778888888888887775 77777788888888887764 3322111 2


Q ss_pred             CCCCCCCcEEEccCCccccCCccc-cCCC-CCCCEEEcCCccccCC-cchHHHhhccccccccccccccCCCCCCCCccc
Q 044082          127 LGNLTNLQSLNLGYNSLYVSKFGW-LSHL-NKLTQLDLDFVDLSEA-SDWLQVITSLASLRDLYLASSTLPSINRPSLSS  203 (243)
Q Consensus       127 l~~l~~L~~L~l~~n~l~~~~~~~-l~~l-~~L~~L~l~~n~l~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  203 (243)
                      +..+..|+.|+++++.+....... +.+. .+|..|+++++...-. ..+.....++++|.+|+|++|..-.... ...+
T Consensus       256 ~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~-~~~~  334 (419)
T KOG2120|consen  256 LSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDC-FQEF  334 (419)
T ss_pred             HHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchH-HHHH
Confidence            456777888888888765432211 1111 3566777776643322 2233345677777777777764322111 1233


Q ss_pred             ccCCCCCcEEECCCCccccccch---hHHhhhccCceeeCCC
Q 044082          204 MNSSTSLALLDLSSCGLSNSAYH---WLFKISSNLLALDLNS  242 (243)
Q Consensus       204 ~~~~~~L~~L~L~~n~i~~~~~~---~l~~l~~~L~~L~l~~  242 (243)
                      .+. +.|++|.++.|-.  .+|.   .+...|. |.+||+-+
T Consensus       335 ~kf-~~L~~lSlsRCY~--i~p~~~~~l~s~ps-l~yLdv~g  372 (419)
T KOG2120|consen  335 FKF-NYLQHLSLSRCYD--IIPETLLELNSKPS-LVYLDVFG  372 (419)
T ss_pred             Hhc-chheeeehhhhcC--CChHHeeeeccCcc-eEEEEecc
Confidence            344 7777777766532  2233   2344455 66666543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.54  E-value=1.7e-09  Score=94.90  Aligned_cols=126  Identities=27%  Similarity=0.280  Sum_probs=72.2

Q ss_pred             CcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccc-cCCCCCCCEEEc
Q 044082           84 LNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGW-LSHLNKLTQLDL  162 (243)
Q Consensus        84 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l  162 (243)
                      |...+.++|.+..  +...+.-++.|++|++++|++. .+. .+..+++|++||+++|.++.. |.- -.. ..|+.|.+
T Consensus       166 L~~a~fsyN~L~~--mD~SLqll~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~~v-p~l~~~g-c~L~~L~l  239 (1096)
T KOG1859|consen  166 LATASFSYNRLVL--MDESLQLLPALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLRHV-PQLSMVG-CKLQLLNL  239 (1096)
T ss_pred             HhhhhcchhhHHh--HHHHHHHHHHhhhhccchhhhh-hhH-HHHhcccccccccccchhccc-cccchhh-hhheeeee
Confidence            4445555555543  3444555666777777777666 333 556667777777777766532 221 111 23667777


Q ss_pred             CCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccc
Q 044082          163 DFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLS  221 (243)
Q Consensus       163 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~  221 (243)
                      ++|.++..-    .+.++.+|+.|++++|-+.+.... ..++.+ ..|+.|+|.+|.+.
T Consensus       240 rnN~l~tL~----gie~LksL~~LDlsyNll~~hseL-~pLwsL-s~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  240 RNNALTTLR----GIENLKSLYGLDLSYNLLSEHSEL-EPLWSL-SSLIVLWLEGNPLC  292 (1096)
T ss_pred             cccHHHhhh----hHHhhhhhhccchhHhhhhcchhh-hHHHHH-HHHHHHhhcCCccc
Confidence            777666652    345666677777777766654431 122333 66677777777664

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.54  E-value=1.1e-09  Score=96.07  Aligned_cols=111  Identities=36%  Similarity=0.377  Sum_probs=66.7

Q ss_pred             hhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCC
Q 044082           77 SLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNK  156 (243)
Q Consensus        77 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~  156 (243)
                      ++.-++.++.|||+.|+++..   +.+..+++|++||+++|.+. .+|..-.-=..|+.|.+.+|.++...  .+.++.+
T Consensus       182 SLqll~ale~LnLshNk~~~v---~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~tL~--gie~Lks  255 (1096)
T KOG1859|consen  182 SLQLLPALESLNLSHNKFTKV---DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTTLR--GIENLKS  255 (1096)
T ss_pred             HHHHHHHhhhhccchhhhhhh---HHHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHhhh--hHHhhhh
Confidence            344456667777777776653   25666777777777777766 55543211123677777777665432  2556666


Q ss_pred             CCEEEcCCccccCCcchHHHhhccccccccccccccCC
Q 044082          157 LTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLP  194 (243)
Q Consensus       157 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~  194 (243)
                      |+.||+++|-+.+..+ ...+..+..|+.|.|.+|.+-
T Consensus       256 L~~LDlsyNll~~hse-L~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  256 LYGLDLSYNLLSEHSE-LEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hhccchhHhhhhcchh-hhHHHHHHHHHHHhhcCCccc
Confidence            7777777777666643 234555666777777776654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.49  E-value=2.3e-08  Score=85.93  Aligned_cols=109  Identities=29%  Similarity=0.375  Sum_probs=59.9

Q ss_pred             hccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCC
Q 044082           78 LLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKL  157 (243)
Q Consensus        78 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  157 (243)
                      +..+++++.+++.+|.+..  +...+..+++|++|++++|.|+...  .+..++.|+.|++++|.+...  +.+..+..|
T Consensus        91 l~~~~~l~~l~l~~n~i~~--i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L  164 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEK--IENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDI--SGLESLKSL  164 (414)
T ss_pred             cccccceeeeeccccchhh--cccchhhhhcchheecccccccccc--chhhccchhhheeccCcchhc--cCCccchhh
Confidence            4555666666666666655  2333555666666666666665322  233445566666666666532  224445666


Q ss_pred             CEEEcCCccccCCcchHHHhhccccccccccccccCC
Q 044082          158 TQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLP  194 (243)
Q Consensus       158 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~  194 (243)
                      +.+++++|.+...... . ...+.+++.+.+.+|.+.
T Consensus       165 ~~l~l~~n~i~~ie~~-~-~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  165 KLLDLSYNRIVDIEND-E-LSELISLEELDLGGNSIR  199 (414)
T ss_pred             hcccCCcchhhhhhhh-h-hhhccchHHHhccCCchh
Confidence            6666666666655310 0 345555556666655544

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.48  E-value=2.7e-07  Score=69.51  Aligned_cols=108  Identities=22%  Similarity=0.236  Sum_probs=66.8

Q ss_pred             CCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccc
Q 044082          108 KLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLY  187 (243)
Q Consensus       108 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~  187 (243)
                      ....+|++.|.+. .. ..+..++.|.+|.+.+|+++...|..-..+++|..|.+.+|+|..+.+ ...+..+++|++|.
T Consensus        43 ~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~d-l~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   43 QFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGD-LDPLASCPKLEYLT  119 (233)
T ss_pred             ccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhh-cchhccCCccceee
Confidence            4556666666655 22 234566777777777777776655544455667777777777776643 23566777777777


Q ss_pred             cccccCCCCCCCCcccccCCCCCcEEECCCC
Q 044082          188 LASSTLPSINRPSLSSMNSSTSLALLDLSSC  218 (243)
Q Consensus       188 l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n  218 (243)
                      +-+|.++.....+..+...+++|+.||++.-
T Consensus       120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             ecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            7777766544322333333377777777643

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.38  E-value=4.2e-09  Score=83.66  Aligned_cols=160  Identities=24%  Similarity=0.227  Sum_probs=112.0

Q ss_pred             CCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCc-cccCCc-cccCCCCCCCE
Q 044082           82 QHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNS-LYVSKF-GWLSHLNKLTQ  159 (243)
Q Consensus        82 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~-~~l~~l~~L~~  159 (243)
                      ..|+++|+++..++...+...+..+.+|+.|.+.++.+.+.+...++.-..|+.|+++.+. ++.-.. --+..++.|..
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            3488899999888765466677888899999999999988888888888899999998764 332111 12457788999


Q ss_pred             EEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCccc-ccCCCCCcEEECCCC-ccccccchhHHhhhccCce
Q 044082          160 LDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSS-MNSSTSLALLDLSSC-GLSNSAYHWLFKISSNLLA  237 (243)
Q Consensus       160 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-~~~~~~L~~L~L~~n-~i~~~~~~~l~~l~~~L~~  237 (243)
                      |+++++.+....-....-.--++|+.|+++++.-.-.......+ ..+ ++|.+|||++| .++......|.+++- |++
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rc-p~l~~LDLSD~v~l~~~~~~~~~kf~~-L~~  342 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRC-PNLVHLDLSDSVMLKNDCFQEFFKFNY-LQH  342 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhC-CceeeeccccccccCchHHHHHHhcch-hee
Confidence            99999887655211112223368899999887532111100122 344 99999999886 566666777888887 999


Q ss_pred             eeCCCC
Q 044082          238 LDLNSN  243 (243)
Q Consensus       238 L~l~~N  243 (243)
                      |.++.|
T Consensus       343 lSlsRC  348 (419)
T KOG2120|consen  343 LSLSRC  348 (419)
T ss_pred             eehhhh
Confidence            988754

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.38  E-value=5.3e-08  Score=83.65  Aligned_cols=131  Identities=30%  Similarity=0.299  Sum_probs=101.6

Q ss_pred             ccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCC
Q 044082           79 LELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLT  158 (243)
Q Consensus        79 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  158 (243)
                      ..+..++.+++..|.+..  .-..+..+++|+.+++..|.+. .+...+..+++|++|++++|.|+...+  +..+..|+
T Consensus        69 ~~l~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~  143 (414)
T KOG0531|consen   69 ESLTSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLK  143 (414)
T ss_pred             HHhHhHHhhccchhhhhh--hhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccccc--hhhccchh
Confidence            345667777788888765  3455788899999999999998 444447788999999999999986533  67777899


Q ss_pred             EEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccc
Q 044082          159 QLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLS  221 (243)
Q Consensus       159 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~  221 (243)
                      .|++.+|.|..+..    +..+..|+.+++++|.+..+..  .....+ .+++.+++.+|.+.
T Consensus       144 ~L~l~~N~i~~~~~----~~~l~~L~~l~l~~n~i~~ie~--~~~~~~-~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  144 ELNLSGNLISDISG----LESLKSLKLLDLSYNRIVDIEN--DELSEL-ISLEELDLGGNSIR  199 (414)
T ss_pred             hheeccCcchhccC----CccchhhhcccCCcchhhhhhh--hhhhhc-cchHHHhccCCchh
Confidence            99999999998863    4458899999999999886543  102444 78888888888876

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.31  E-value=1.6e-07  Score=74.80  Aligned_cols=84  Identities=26%  Similarity=0.273  Sum_probs=53.6

Q ss_pred             CceEEEecCCCCCCCCCCCCccc--ccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccC-CcC
Q 044082           50 GHVIMLNLKYKVDPVCPNRPLRG--NINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRI-PYQ  126 (243)
Q Consensus        50 ~~l~~L~l~~~~~~~~~~~~~~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~  126 (243)
                      .+|..+||.+        |.++.  ++...+.+|+.|++|+++.|.+.+. +...-..+.+|++|-+.+..+.... .+.
T Consensus        71 ~~v~elDL~~--------N~iSdWseI~~ile~lP~l~~LNls~N~L~s~-I~~lp~p~~nl~~lVLNgT~L~w~~~~s~  141 (418)
T KOG2982|consen   71 TDVKELDLTG--------NLISDWSEIGAILEQLPALTTLNLSCNSLSSD-IKSLPLPLKNLRVLVLNGTGLSWTQSTSS  141 (418)
T ss_pred             hhhhhhhccc--------chhccHHHHHHHHhcCccceEeeccCCcCCCc-cccCcccccceEEEEEcCCCCChhhhhhh
Confidence            3566667776        46652  4555567788888888888877653 2221134567777777777665333 334


Q ss_pred             CCCCCCCcEEEccCCc
Q 044082          127 LGNLTNLQSLNLGYNS  142 (243)
Q Consensus       127 l~~l~~L~~L~l~~n~  142 (243)
                      +..+|.++.|.++.|.
T Consensus       142 l~~lP~vtelHmS~N~  157 (418)
T KOG2982|consen  142 LDDLPKVTELHMSDNS  157 (418)
T ss_pred             hhcchhhhhhhhccch
Confidence            5677788888887774

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.28  E-value=2.8e-08  Score=70.35  Aligned_cols=91  Identities=29%  Similarity=0.296  Sum_probs=52.9

Q ss_pred             hhccCCCCcEEEccCCCCCCCCcchhh-cCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCC
Q 044082           77 SLLELQHLNYLDLSVNDFLGNPIPEFI-GFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLN  155 (243)
Q Consensus        77 ~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~  155 (243)
                      .+....+|+..++++|.+..  +|+.| ..++.++.+++.+|.++ .+|..++.++.|+.|++..|.+.. .|..+..+.
T Consensus        48 ~l~~~~el~~i~ls~N~fk~--fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~-~p~vi~~L~  123 (177)
T KOG4579|consen   48 MLSKGYELTKISLSDNGFKK--FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNA-EPRVIAPLI  123 (177)
T ss_pred             HHhCCceEEEEecccchhhh--CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCcccc-chHHHHHHH
Confidence            34445556666667766665  33333 34456666666666666 566666666666666666666653 344444455


Q ss_pred             CCCEEEcCCccccCCc
Q 044082          156 KLTQLDLDFVDLSEAS  171 (243)
Q Consensus       156 ~L~~L~l~~n~l~~~~  171 (243)
                      ++..|+..+|.+..++
T Consensus       124 ~l~~Lds~~na~~eid  139 (177)
T KOG4579|consen  124 KLDMLDSPENARAEID  139 (177)
T ss_pred             hHHHhcCCCCccccCc
Confidence            6666666666665553

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.27  E-value=7e-07  Score=70.38  Aligned_cols=11  Identities=9%  Similarity=0.253  Sum_probs=7.2

Q ss_pred             CceEEEecCCC
Q 044082           50 GHVIMLNLKYK   60 (243)
Q Consensus        50 ~~l~~L~l~~~   60 (243)
                      ..++.+|||||
T Consensus        30 d~~~evdLSGN   40 (388)
T COG5238          30 DELVEVDLSGN   40 (388)
T ss_pred             cceeEEeccCC
Confidence            34667777774

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.25  E-value=1e-06  Score=81.71  Aligned_cols=105  Identities=31%  Similarity=0.353  Sum_probs=56.9

Q ss_pred             CCcEEEccCCC--CCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEE
Q 044082           83 HLNYLDLSVND--FLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQL  160 (243)
Q Consensus        83 ~L~~L~l~~n~--l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  160 (243)
                      .|+.|-+.+|.  +... ....|..++.|+.||+++|.-.+.+|..++.+.+|++|++++..+. .+|..++++..|.+|
T Consensus       546 ~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L  623 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL  623 (889)
T ss_pred             ccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence            45555555553  2221 2333555666666666665544566666666666666666666665 445556666666666


Q ss_pred             EcCCccccCCcchHHHhhccccccccccccc
Q 044082          161 DLDFVDLSEASDWLQVITSLASLRDLYLASS  191 (243)
Q Consensus       161 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n  191 (243)
                      ++..+......  +.....+.+|++|.+...
T Consensus       624 nl~~~~~l~~~--~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  624 NLEVTGRLESI--PGILLELQSLRVLRLPRS  652 (889)
T ss_pred             ccccccccccc--cchhhhcccccEEEeecc
Confidence            66555443331  123444566666655443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.06  E-value=5.3e-06  Score=47.38  Aligned_cols=36  Identities=33%  Similarity=0.401  Sum_probs=19.9

Q ss_pred             CCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCcccc
Q 044082           83 HLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFS  120 (243)
Q Consensus        83 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~  120 (243)
                      +|++|++++|.++.  +|..++.|++|++|++++|.++
T Consensus         2 ~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITD--LPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCcc--cCchHhCCCCCCEEEecCCCCC
Confidence            45666666666654  4555566666666666666555

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.06  E-value=6.9e-07  Score=80.82  Aligned_cols=143  Identities=22%  Similarity=0.268  Sum_probs=76.6

Q ss_pred             CCCcEEEccCCCCCCCCcchhhc-CCCCCcEEecCCcccc-ccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCE
Q 044082           82 QHLNYLDLSVNDFLGNPIPEFIG-FFTKLRFLDLSLANFS-GRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQ  159 (243)
Q Consensus        82 ~~L~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  159 (243)
                      .+|++|++++...-...-|..++ .+|.|+.|.+++-.+. +.+.....++|+|..||+++..++..  ..++.+.+|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            55666666665432221233333 4566777776665443 22233344566677777777666543  34566666666


Q ss_pred             EEcCCccccCCcchHHHhhccccccccccccccCCCCCC---CCcccccCCCCCcEEECCCCccccccchh
Q 044082          160 LDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINR---PSLSSMNSSTSLALLDLSSCGLSNSAYHW  227 (243)
Q Consensus       160 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~---~~~~~~~~~~~L~~L~L~~n~i~~~~~~~  227 (243)
                      |.+.+-.+.....+ ..+-.+++|+.||+|..+......   ....-+..+|+|+.||.+++.+...+.+.
T Consensus       200 L~mrnLe~e~~~~l-~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~  269 (699)
T KOG3665|consen  200 LSMRNLEFESYQDL-IDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEE  269 (699)
T ss_pred             HhccCCCCCchhhH-HHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHH
Confidence            66666666554332 244556677777776654433210   00011222377777777777766554443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.02  E-value=1.8e-06  Score=68.18  Aligned_cols=86  Identities=23%  Similarity=0.285  Sum_probs=55.0

Q ss_pred             CCceEEEecCCCCCCCCCCCCcccc-----------cchhhccCCCCcEEEccCCCCCCCCcc----hhhcCCCCCcEEe
Q 044082           49 TGHVIMLNLKYKVDPVCPNRPLRGN-----------INSSLLELQHLNYLDLSVNDFLGNPIP----EFIGFFTKLRFLD  113 (243)
Q Consensus        49 ~~~l~~L~l~~~~~~~~~~~~~~~~-----------~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~~l~~L~~L~  113 (243)
                      ...++..++++         -++|.           +-+.+.+++.|+..++++|.+... .|    +.+++-+.|.+|.
T Consensus        57 ~~~L~vvnfsd---------~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~-~~e~L~d~is~~t~l~HL~  126 (388)
T COG5238          57 VRNLRVVNFSD---------AFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE-FPEELGDLISSSTDLVHLK  126 (388)
T ss_pred             hcceeEeehhh---------hhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc-cchHHHHHHhcCCCceeEE
Confidence            45677777777         44442           224556778888888888887655 44    3455667788888


Q ss_pred             cCCccccccCCc-------------CCCCCCCCcEEEccCCccc
Q 044082          114 LSLANFSGRIPY-------------QLGNLTNLQSLNLGYNSLY  144 (243)
Q Consensus       114 l~~~~~~~~~~~-------------~l~~l~~L~~L~l~~n~l~  144 (243)
                      +++|.+......             ..+.-|.|++.....|++.
T Consensus       127 l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle  170 (388)
T COG5238         127 LNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE  170 (388)
T ss_pred             eecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence            888876522111             1234567777777777743

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.00  E-value=3.1e-06  Score=76.66  Aligned_cols=109  Identities=23%  Similarity=0.267  Sum_probs=57.6

Q ss_pred             CCCcEEecCCccc-cccCCcCCC-CCCCCcEEEccCCccccC-CccccCCCCCCCEEEcCCccccCCcchHHHhhccccc
Q 044082          107 TKLRFLDLSLANF-SGRIPYQLG-NLTNLQSLNLGYNSLYVS-KFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASL  183 (243)
Q Consensus       107 ~~L~~L~l~~~~~-~~~~~~~l~-~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L  183 (243)
                      .+|++|++++... ....|..++ -+|+|++|.+.+-.+... ......++++|..||+++..++..    ..++++++|
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl----~GIS~LknL  197 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL----SGISRLKNL  197 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc----HHHhccccH
Confidence            3466666665432 112222333 346666666666554332 122334566666667766666666    255666666


Q ss_pred             cccccccccCCCCCCCCcccccCCCCCcEEECCCCccc
Q 044082          184 RDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLS  221 (243)
Q Consensus       184 ~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~  221 (243)
                      +.|.+.+-.+...... ..+..+ ++|+.||+|.....
T Consensus       198 q~L~mrnLe~e~~~~l-~~LF~L-~~L~vLDIS~~~~~  233 (699)
T KOG3665|consen  198 QVLSMRNLEFESYQDL-IDLFNL-KKLRVLDISRDKNN  233 (699)
T ss_pred             HHHhccCCCCCchhhH-HHHhcc-cCCCeeeccccccc
Confidence            6666666555432110 234444 66677776665443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.94  E-value=5.2e-05  Score=64.12  Aligned_cols=32  Identities=19%  Similarity=0.188  Sum_probs=17.2

Q ss_pred             CCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCc
Q 044082           83 HLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLA  117 (243)
Q Consensus        83 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~  117 (243)
                      +|+.|.++++.-... +|+.+  .++|++|.+++|
T Consensus        73 sLtsL~Lsnc~nLts-LP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         73 ELTEITIENCNNLTT-LPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             CCcEEEccCCCCccc-CCchh--hhhhhheEccCc
Confidence            466666665433222 44433  245666677666

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.94  E-value=3.3e-06  Score=66.08  Aligned_cols=40  Identities=33%  Similarity=0.340  Sum_probs=17.1

Q ss_pred             CCCCCcEEecCCc--cccccCCcCCCCCCCCcEEEccCCccc
Q 044082          105 FFTKLRFLDLSLA--NFSGRIPYQLGNLTNLQSLNLGYNSLY  144 (243)
Q Consensus       105 ~l~~L~~L~l~~~--~~~~~~~~~l~~l~~L~~L~l~~n~l~  144 (243)
                      .|++|+.|.++.|  .+.+.++...-.+|+|+++.++.|++.
T Consensus        63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            3444555555544  333222222223344555555555443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.90  E-value=1.5e-05  Score=60.28  Aligned_cols=124  Identities=26%  Similarity=0.314  Sum_probs=87.4

Q ss_pred             CcEEecCCccccccCCcCCC-CCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCC-cchHHHhhcccccccc
Q 044082          109 LRFLDLSLANFSGRIPYQLG-NLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEA-SDWLQVITSLASLRDL  186 (243)
Q Consensus       109 L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~~~l~~L~~L  186 (243)
                      =+.+++++..+. .... ++ -+.+...+|+++|.+...  ..|..++.|.+|.+..|.|+.+ |.   .-.-+++|..|
T Consensus        21 e~e~~LR~lkip-~ien-lg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~---L~~~~p~l~~L   93 (233)
T KOG1644|consen   21 ERELDLRGLKIP-VIEN-LGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPD---LDTFLPNLKTL   93 (233)
T ss_pred             cccccccccccc-chhh-ccccccccceecccccchhhc--ccCCCccccceEEecCCcceeeccc---hhhhccccceE
Confidence            344556555544 1111 22 245678899999988643  3488899999999999999999 43   33445789999


Q ss_pred             ccccccCCCCCCCCcccccCCCCCcEEECCCCcccccc---chhHHhhhccCceeeCCC
Q 044082          187 YLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSA---YHWLFKISSNLLALDLNS  242 (243)
Q Consensus       187 ~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~---~~~l~~l~~~L~~L~l~~  242 (243)
                      .|.+|.+...... ..+..+ ++|+.|.+-+|.++..-   -..+..+|+ |+.||+..
T Consensus        94 ~LtnNsi~~l~dl-~pLa~~-p~L~~Ltll~Npv~~k~~YR~yvl~klp~-l~~LDF~k  149 (233)
T KOG1644|consen   94 ILTNNSIQELGDL-DPLASC-PKLEYLTLLGNPVEHKKNYRLYVLYKLPS-LRTLDFQK  149 (233)
T ss_pred             EecCcchhhhhhc-chhccC-CccceeeecCCchhcccCceeEEEEecCc-ceEeehhh
Confidence            9999988765431 345556 99999999999987532   235677888 99999863

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.88  E-value=1.2e-05  Score=45.90  Aligned_cols=39  Identities=33%  Similarity=0.327  Sum_probs=21.5

Q ss_pred             CCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCc
Q 044082          132 NLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEAS  171 (243)
Q Consensus       132 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~  171 (243)
                      +|++|++++|+++. +|..++.+++|++|++++|.+++++
T Consensus         2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCCCCc
Confidence            45666666666653 3334566666666666666665553

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.87  E-value=1e-06  Score=62.56  Aligned_cols=87  Identities=17%  Similarity=0.214  Sum_probs=72.7

Q ss_pred             CCCceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCC
Q 044082           48 RTGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQL  127 (243)
Q Consensus        48 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l  127 (243)
                      ...+++.++|++        |.+..-.++...+++.++.+++++|.+..  +|.++..++.|+.++++.|.+. ..|..+
T Consensus        51 ~~~el~~i~ls~--------N~fk~fp~kft~kf~t~t~lNl~~neisd--vPeE~Aam~aLr~lNl~~N~l~-~~p~vi  119 (177)
T KOG4579|consen   51 KGYELTKISLSD--------NGFKKFPKKFTIKFPTATTLNLANNEISD--VPEELAAMPALRSLNLRFNPLN-AEPRVI  119 (177)
T ss_pred             CCceEEEEeccc--------chhhhCCHHHhhccchhhhhhcchhhhhh--chHHHhhhHHhhhcccccCccc-cchHHH
Confidence            346788899999        58775444455677799999999999988  7999999999999999999999 778777


Q ss_pred             CCCCCCcEEEccCCcccc
Q 044082          128 GNLTNLQSLNLGYNSLYV  145 (243)
Q Consensus       128 ~~l~~L~~L~l~~n~l~~  145 (243)
                      ..+.++..|+..+|....
T Consensus       120 ~~L~~l~~Lds~~na~~e  137 (177)
T KOG4579|consen  120 APLIKLDMLDSPENARAE  137 (177)
T ss_pred             HHHHhHHHhcCCCCcccc
Confidence            778889999998887653

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.51  E-value=3e-05  Score=62.13  Aligned_cols=150  Identities=17%  Similarity=0.167  Sum_probs=89.6

Q ss_pred             CCcccceEEec-CCCCceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEec
Q 044082           36 DCCKWSGVQCS-NRTGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDL  114 (243)
Q Consensus        36 ~~~~~~~~~c~-~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l  114 (243)
                      ....|..+.|. ...++++.|+++.        |.+...+-..=..+.+|+.|-+.+..+........+..+|.++.|.+
T Consensus        82 ~iSdWseI~~ile~lP~l~~LNls~--------N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHm  153 (418)
T KOG2982|consen   82 LISDWSEIGAILEQLPALTTLNLSC--------NSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHM  153 (418)
T ss_pred             hhccHHHHHHHHhcCccceEeeccC--------CcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhh
Confidence            35578877664 4568999999999        57765442211567889999999998876656677788888889888


Q ss_pred             CCcccccc-----CCcCC-------C-----------------CCCCCcEEEccCCccccCC-ccccCCCCCCCEEEcCC
Q 044082          115 SLANFSGR-----IPYQL-------G-----------------NLTNLQSLNLGYNSLYVSK-FGWLSHLNKLTQLDLDF  164 (243)
Q Consensus       115 ~~~~~~~~-----~~~~l-------~-----------------~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~  164 (243)
                      +.|.....     ..+.+       .                 .+|++..+-+..|.+.... .+....++.+-.|+++.
T Consensus       154 S~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~  233 (418)
T KOG2982|consen  154 SDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGA  233 (418)
T ss_pred             ccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcc
Confidence            88844311     00000       0                 1233333444444332211 12223344555666666


Q ss_pred             ccccCCcchHHHhhccccccccccccccCC
Q 044082          165 VDLSEASDWLQVITSLASLRDLYLASSTLP  194 (243)
Q Consensus       165 n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~  194 (243)
                      |+|..+.+ .+.+.++++|+.|.++.+.+.
T Consensus       234 ~~idswas-vD~Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  234 NNIDSWAS-VDALNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             cccccHHH-HHHHcCCchhheeeccCCccc
Confidence            66666643 345666666666666666543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.49  E-value=9.2e-05  Score=58.15  Aligned_cols=107  Identities=20%  Similarity=0.224  Sum_probs=52.2

Q ss_pred             CCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCC--ccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhcccc
Q 044082          105 FFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYN--SLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLAS  182 (243)
Q Consensus       105 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n--~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~  182 (243)
                      .+..|+.+.+.+..++ .+ ..+..+++|++|.++.|  ++.+..+.....+++|+++++++|.+..+.. ...+..+.+
T Consensus        41 ~~~~le~ls~~n~glt-t~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lst-l~pl~~l~n  117 (260)
T KOG2739|consen   41 EFVELELLSVINVGLT-TL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLST-LRPLKELEN  117 (260)
T ss_pred             cccchhhhhhhcccee-ec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccc-cchhhhhcc
Confidence            3344444455444443 11 22345566666666666  4443333333344666666666666655422 224455556


Q ss_pred             ccccccccccCCCCCCCCcccccCCCCCcEEE
Q 044082          183 LRDLYLASSTLPSINRPSLSSMNSSTSLALLD  214 (243)
Q Consensus       183 L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~  214 (243)
                      |..|++..|..+...-....++.++++|..||
T Consensus       118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD  149 (260)
T KOG2739|consen  118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD  149 (260)
T ss_pred             hhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence            66666666655543221223333335555544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.44  E-value=8.9e-06  Score=64.51  Aligned_cols=85  Identities=19%  Similarity=0.210  Sum_probs=52.2

Q ss_pred             CCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccc
Q 044082          106 FTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRD  185 (243)
Q Consensus       106 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~  185 (243)
                      +.+.+.|+.-+|.+.+.  +...+|+.|+.|.++-|.|+..-|  +..+.+|+.|.|..|.|.++.+ .+.+.++++|+.
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldE-L~YLknlpsLr~   92 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDE-LEYLKNLPSLRT   92 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHH-HHHHhcCchhhh
Confidence            34455566666665532  123466777777777777765433  5666677777777777776654 346667777777


Q ss_pred             cccccccCCC
Q 044082          186 LYLASSTLPS  195 (243)
Q Consensus       186 L~l~~n~~~~  195 (243)
                      |.|..|...+
T Consensus        93 LWL~ENPCc~  102 (388)
T KOG2123|consen   93 LWLDENPCCG  102 (388)
T ss_pred             HhhccCCccc
Confidence            7776665544

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.43  E-value=0.00043  Score=58.73  Aligned_cols=85  Identities=13%  Similarity=0.125  Sum_probs=58.3

Q ss_pred             ccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCC-ccccCCcccc
Q 044082           73 NINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYN-SLYVSKFGWL  151 (243)
Q Consensus        73 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~l  151 (243)
                      .+...+..+++++.|++++|.++.  +|.   -..+|++|.+++|.-...+|..+  .++|++|.+++| .+. .+|   
T Consensus        43 ~a~~r~~~~~~l~~L~Is~c~L~s--LP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP---  111 (426)
T PRK15386         43 EITPQIEEARASGRLYIKDCDIES--LPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP---  111 (426)
T ss_pred             HHHHHHHHhcCCCEEEeCCCCCcc--cCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc---
Confidence            333456667999999999998877  562   12469999999865444666655  357999999988 443 333   


Q ss_pred             CCCCCCCEEEcCCccccCCc
Q 044082          152 SHLNKLTQLDLDFVDLSEAS  171 (243)
Q Consensus       152 ~~l~~L~~L~l~~n~l~~~~  171 (243)
                         .+|+.|++..+....++
T Consensus       112 ---~sLe~L~L~~n~~~~L~  128 (426)
T PRK15386        112 ---ESVRSLEIKGSATDSIK  128 (426)
T ss_pred             ---cccceEEeCCCCCcccc
Confidence               35777777776654443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.00  E-value=1.9e-05  Score=62.65  Aligned_cols=104  Identities=22%  Similarity=0.201  Sum_probs=70.3

Q ss_pred             ccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCC-ccccCCCCCC
Q 044082           79 LELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSK-FGWLSHLNKL  157 (243)
Q Consensus        79 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L  157 (243)
                      +.+.+.++|+..++.+...   ....+|+.|+.|.|+-|.|+..  ..+..|.+|++|++..|.|.... ..-+.++++|
T Consensus        16 sdl~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsL   90 (388)
T KOG2123|consen   16 SDLENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSL   90 (388)
T ss_pred             hHHHHhhhhcccCCCccHH---HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchh
Confidence            3456677788888887653   4456788888888888887732  23567888888888888776432 2346778888


Q ss_pred             CEEEcCCccccCC-c-c-hHHHhhccccccccc
Q 044082          158 TQLDLDFVDLSEA-S-D-WLQVITSLASLRDLY  187 (243)
Q Consensus       158 ~~L~l~~n~l~~~-~-~-~~~~~~~l~~L~~L~  187 (243)
                      ++|=+..|...+. + . =...+.-+++|+.|+
T Consensus        91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            8888888776654 1 1 123456667777665

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.78  E-value=0.008  Score=42.49  Aligned_cols=37  Identities=8%  Similarity=0.077  Sum_probs=13.1

Q ss_pred             hhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecC
Q 044082           77 SLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLS  115 (243)
Q Consensus        77 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~  115 (243)
                      .+.++++|+.+.+..+ +... -...+..+++++.+.+.
T Consensus        30 ~F~~~~~l~~i~~~~~-~~~i-~~~~F~~~~~l~~i~~~   66 (129)
T PF13306_consen   30 AFSNCTSLKSINFPNN-LTSI-GDNAFSNCKSLESITFP   66 (129)
T ss_dssp             TTTT-TT-SEEEESST-TSCE--TTTTTT-TT-EEEEET
T ss_pred             hccccccccccccccc-cccc-ceeeeeccccccccccc
Confidence            3444444555544443 2221 12233444444444443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.66  E-value=0.0071  Score=42.75  Aligned_cols=106  Identities=12%  Similarity=0.156  Sum_probs=44.6

Q ss_pred             hhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCC
Q 044082           77 SLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNK  156 (243)
Q Consensus        77 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~  156 (243)
                      .|.+.++|+.+.+.. .+... -...|..+++|+.+.+..+ +.......+..++.++.+.+.. .+.......+..+.+
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I-~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKI-GENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE--TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HHhCCCCCCEEEECC-CeeEe-Chhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence            345555666666654 23332 2344556666777776654 4423333455565667776654 332223344555666


Q ss_pred             CCEEEcCCccccCCcchHHHhhcccccccccccc
Q 044082          157 LTQLDLDFVDLSEASDWLQVITSLASLRDLYLAS  190 (243)
Q Consensus       157 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~  190 (243)
                      |+.+.+..+ +...+.  ..+..+ .|+.+.+..
T Consensus        83 l~~i~~~~~-~~~i~~--~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   83 LKNIDIPSN-ITEIGS--SSFSNC-NLKEINIPS  112 (129)
T ss_dssp             ECEEEETTT--BEEHT--TTTTT--T--EEE-TT
T ss_pred             ccccccCcc-ccEEch--hhhcCC-CceEEEECC
Confidence            666666543 433321  134444 555555443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.11  E-value=0.002  Score=30.65  Aligned_cols=21  Identities=33%  Similarity=0.305  Sum_probs=16.0

Q ss_pred             CCcEEECCCCccccccchhHHh
Q 044082          209 SLALLDLSSCGLSNSAYHWLFK  230 (243)
Q Consensus       209 ~L~~L~L~~n~i~~~~~~~l~~  230 (243)
                      +|+.||+++|+|+ .+|+++++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            4788888888888 77776544

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.29  E-value=0.0099  Score=28.20  Aligned_cols=11  Identities=45%  Similarity=0.697  Sum_probs=4.1

Q ss_pred             cEEecCCcccc
Q 044082          110 RFLDLSLANFS  120 (243)
Q Consensus       110 ~~L~l~~~~~~  120 (243)
                      ++|++++|.++
T Consensus         3 ~~Ldls~n~l~   13 (22)
T PF00560_consen    3 EYLDLSGNNLT   13 (22)
T ss_dssp             SEEEETSSEES
T ss_pred             cEEECCCCcCE
Confidence            33333333333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=94.77  E-value=0.019  Score=27.78  Aligned_cols=22  Identities=27%  Similarity=0.298  Sum_probs=16.5

Q ss_pred             CCCcEEECCCCccccccchhHH
Q 044082          208 TSLALLDLSSCGLSNSAYHWLF  229 (243)
Q Consensus       208 ~~L~~L~L~~n~i~~~~~~~l~  229 (243)
                      ++|++|+|++|.|++.....++
T Consensus         2 ~~L~~L~l~~n~i~~~g~~~l~   23 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGASALA   23 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHHHHHH
T ss_pred             CCCCEEEccCCcCCHHHHHHhC
Confidence            7899999999999987776664

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.76  E-value=0.00027  Score=61.57  Aligned_cols=181  Identities=25%  Similarity=0.259  Sum_probs=103.0

Q ss_pred             eEEEecCCCCCCCCCCCCcccc----cchhhccCCCCcEEEccCCCCCCCCcc---hhhcCC-CCCcEEecCCccccccC
Q 044082           52 VIMLNLKYKVDPVCPNRPLRGN----INSSLLELQHLNYLDLSVNDFLGNPIP---EFIGFF-TKLRFLDLSLANFSGRI  123 (243)
Q Consensus        52 l~~L~l~~~~~~~~~~~~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~~l-~~L~~L~l~~~~~~~~~  123 (243)
                      +..++|..|        .+...    +...+.....|+.|++++|.+......   ..+... ..+++|.+..|.++...
T Consensus        89 l~~L~L~~~--------~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g  160 (478)
T KOG4308|consen   89 LLHLSLANN--------RLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEG  160 (478)
T ss_pred             HHHhhhhhC--------ccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccc
Confidence            455666663        55432    334556678888888888888654111   112222 44666777777766433


Q ss_pred             ----CcCCCCCCCCcEEEccCCcccc----CCccccC----CCCCCCEEEcCCccccCC--cchHHHhhcccc-cccccc
Q 044082          124 ----PYQLGNLTNLQSLNLGYNSLYV----SKFGWLS----HLNKLTQLDLDFVDLSEA--SDWLQVITSLAS-LRDLYL  188 (243)
Q Consensus       124 ----~~~l~~l~~L~~L~l~~n~l~~----~~~~~l~----~l~~L~~L~l~~n~l~~~--~~~~~~~~~l~~-L~~L~l  188 (243)
                          ...+.....++.+++..|.+..    .++..+.    ...++++|.+.+|.++..  ..+...+...++ ++.+++
T Consensus       161 ~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l  240 (478)
T KOG4308|consen  161 AAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDL  240 (478)
T ss_pred             hHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHH
Confidence                2334456677788888777531    1122222    456788888888877644  112234445555 666888


Q ss_pred             ccccCCCCCCCCcccccCC----CCCcEEECCCCcccccc----chhHHhhhccCceeeCCCC
Q 044082          189 ASSTLPSINRPSLSSMNSS----TSLALLDLSSCGLSNSA----YHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       189 ~~n~~~~~~~~~~~~~~~~----~~L~~L~L~~n~i~~~~----~~~l~~l~~~L~~L~l~~N  243 (243)
                      ..|.+.....  ......+    ..++.++++.|.|++..    .+.+..++. ++++.++.|
T Consensus       241 ~~n~l~d~g~--~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~-l~~l~l~~n  300 (478)
T KOG4308|consen  241 ASNKLGDVGV--EKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQ-LEELSLSNN  300 (478)
T ss_pred             HhcCcchHHH--HHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHH-HHHhhcccC
Confidence            8877764311  1111111    45678888888887643    334445554 777776654

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.58  E-value=0.013  Score=44.64  Aligned_cols=35  Identities=14%  Similarity=0.270  Sum_probs=19.4

Q ss_pred             CCcEEEccCCccccCCccccCCCCCCCEEEcCCcc
Q 044082          132 NLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVD  166 (243)
Q Consensus       132 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  166 (243)
                      .++.++.++..+..+..+.+..++.++.|.+.++.
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck  136 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK  136 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence            35566666666655555555555555555555443

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.57  E-value=0.05  Score=23.95  Aligned_cols=13  Identities=46%  Similarity=0.552  Sum_probs=6.6

Q ss_pred             CCcEEECCCCccc
Q 044082          209 SLALLDLSSCGLS  221 (243)
Q Consensus       209 ~L~~L~L~~n~i~  221 (243)
                      +|+.|++++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            5666777776665

...

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=93.41  E-value=0.031  Score=48.70  Aligned_cols=111  Identities=23%  Similarity=0.190  Sum_probs=46.2

Q ss_pred             CCCCcEEEccCCCCCC-CCcchhhcCCCCCcEEecCCc-cccccCC----cCCCCCCCCcEEEccCCc-cccCCccccCC
Q 044082           81 LQHLNYLDLSVNDFLG-NPIPEFIGFFTKLRFLDLSLA-NFSGRIP----YQLGNLTNLQSLNLGYNS-LYVSKFGWLSH  153 (243)
Q Consensus        81 l~~L~~L~l~~n~l~~-~~~~~~~~~l~~L~~L~l~~~-~~~~~~~----~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~  153 (243)
                      .+.|+.+.+.++.... ..+-.....++.|+.|+++++ ......+    .....+.+|+.|+++++. ++......+..
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            4555555555543221 111233344555555555542 1110111    122234555555555554 33332222222


Q ss_pred             -CCCCCEEEcCCcc-ccCCcchHHHhhcccccccccccccc
Q 044082          154 -LNKLTQLDLDFVD-LSEASDWLQVITSLASLRDLYLASST  192 (243)
Q Consensus       154 -l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~  192 (243)
                       +++|+.|.+..+. +++.. +......++.|++|+++++.
T Consensus       267 ~c~~L~~L~l~~c~~lt~~g-l~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEG-LVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             hCCCcceEccCCCCccchhH-HHHHHHhcCcccEEeeecCc
Confidence             4455555544444 33332 22233445555555555544

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=92.99  E-value=0.026  Score=49.17  Aligned_cols=114  Identities=25%  Similarity=0.186  Sum_probs=69.4

Q ss_pred             CCCCCcEEecCCcccccc--CCcCCCCCCCCcEEEccCC-ccccCC----ccccCCCCCCCEEEcCCcc-ccCCcchHHH
Q 044082          105 FFTKLRFLDLSLANFSGR--IPYQLGNLTNLQSLNLGYN-SLYVSK----FGWLSHLNKLTQLDLDFVD-LSEASDWLQV  176 (243)
Q Consensus       105 ~l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~n-~l~~~~----~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~  176 (243)
                      .++.|+.+.+..+.....  .-.....++.|+.|+++.+ ......    ......+.+|+.++++.+. +++.. +...
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~-l~~l  264 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIG-LSAL  264 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchh-HHHH
Confidence            467788888777643322  2234457788888888863 211111    1223455788888888887 55552 2223


Q ss_pred             hhcccccccccccccc-CCCCCCCCcccccCCCCCcEEECCCCccc
Q 044082          177 ITSLASLRDLYLASST-LPSINRPSLSSMNSSTSLALLDLSSCGLS  221 (243)
Q Consensus       177 ~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~~~~L~~L~L~~n~i~  221 (243)
                      ...+++|++|.+.++. ++....  ..+...++.|++|+++.+...
T Consensus       265 ~~~c~~L~~L~l~~c~~lt~~gl--~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  265 ASRCPNLETLSLSNCSNLTDEGL--VSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             HhhCCCcceEccCCCCccchhHH--HHHHHhcCcccEEeeecCccc
Confidence            3447888888877776 444333  344444478999999877653

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=91.96  E-value=0.068  Score=45.28  Aligned_cols=88  Identities=23%  Similarity=0.160  Sum_probs=36.7

Q ss_pred             CCCCCcEEecCCccccccCC-cCC-CCCCCCcEEEccCCc-cccCCcccc-CCCCCCCEEEcCCccccCCcchHHHhhcc
Q 044082          105 FFTKLRFLDLSLANFSGRIP-YQL-GNLTNLQSLNLGYNS-LYVSKFGWL-SHLNKLTQLDLDFVDLSEASDWLQVITSL  180 (243)
Q Consensus       105 ~l~~L~~L~l~~~~~~~~~~-~~l-~~l~~L~~L~l~~n~-l~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~~~l  180 (243)
                      .+..|+.++.+++...+..+ ..+ ++.++|+.+.++.++ ++......+ .+.+.|+.+++..+.......+...-.++
T Consensus       292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C  371 (483)
T KOG4341|consen  292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC  371 (483)
T ss_pred             hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence            34445555555443321111 111 234555555555543 222211112 13345555555554433332223333445


Q ss_pred             cccccccccccc
Q 044082          181 ASLRDLYLASST  192 (243)
Q Consensus       181 ~~L~~L~l~~n~  192 (243)
                      +.|+.+.+++|.
T Consensus       372 ~~lr~lslshce  383 (483)
T KOG4341|consen  372 PRLRVLSLSHCE  383 (483)
T ss_pred             chhccCChhhhh
Confidence            555555555543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.81  E-value=0.16  Score=24.85  Aligned_cols=20  Identities=40%  Similarity=0.208  Sum_probs=14.8

Q ss_pred             CCCcEEECCCCccccccchhH
Q 044082          208 TSLALLDLSSCGLSNSAYHWL  228 (243)
Q Consensus       208 ~~L~~L~L~~n~i~~~~~~~l  228 (243)
                      ++|+.|+|++|+|+ .+|...
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~   21 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPPGA   21 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHH
Confidence            67888888888887 566543

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.81  E-value=0.16  Score=24.85  Aligned_cols=20  Identities=40%  Similarity=0.208  Sum_probs=14.8

Q ss_pred             CCCcEEECCCCccccccchhH
Q 044082          208 TSLALLDLSSCGLSNSAYHWL  228 (243)
Q Consensus       208 ~~L~~L~L~~n~i~~~~~~~l  228 (243)
                      ++|+.|+|++|+|+ .+|...
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~   21 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPPGA   21 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHH
Confidence            67888888888887 566543

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.39  E-value=0.038  Score=42.24  Aligned_cols=85  Identities=22%  Similarity=0.226  Sum_probs=58.9

Q ss_pred             CCCcEEecCCccccccCCcCCCCCCCCcEEEccCCcccc-CCccccC-CCCCCCEEEcCCc-cccCCcchHHHhhccccc
Q 044082          107 TKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYV-SKFGWLS-HLNKLTQLDLDFV-DLSEASDWLQVITSLASL  183 (243)
Q Consensus       107 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~-~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L  183 (243)
                      ..++.++.+++.+..+.-..+.++++++.|.+.++.--+ ...+-++ ..++|+.|++++| .|++..  ...+.++++|
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~G--L~~L~~lknL  178 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGG--LACLLKLKNL  178 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhH--HHHHHHhhhh
Confidence            457888888888887777778888889888888886321 1111122 3478999999977 466653  2467788888


Q ss_pred             cccccccccC
Q 044082          184 RDLYLASSTL  193 (243)
Q Consensus       184 ~~L~l~~n~~  193 (243)
                      +.|.+.+-..
T Consensus       179 r~L~l~~l~~  188 (221)
T KOG3864|consen  179 RRLHLYDLPY  188 (221)
T ss_pred             HHHHhcCchh
Confidence            8888766443

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.21  E-value=0.0086  Score=46.79  Aligned_cols=86  Identities=19%  Similarity=0.109  Sum_probs=66.3

Q ss_pred             CCCceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCC
Q 044082           48 RTGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQL  127 (243)
Q Consensus        48 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l  127 (243)
                      ...+++.||++.+        .+. .+-..++.++.+..|+++.|.+..  +|..+.....++.+++..|..+ ..|.++
T Consensus        40 ~~kr~tvld~~s~--------r~v-n~~~n~s~~t~~~rl~~sknq~~~--~~~d~~q~~e~~~~~~~~n~~~-~~p~s~  107 (326)
T KOG0473|consen   40 SFKRVTVLDLSSN--------RLV-NLGKNFSILTRLVRLDLSKNQIKF--LPKDAKQQRETVNAASHKNNHS-QQPKSQ  107 (326)
T ss_pred             ccceeeeehhhhh--------HHH-hhccchHHHHHHHHHhccHhhHhh--ChhhHHHHHHHHHHHhhccchh-hCCccc
Confidence            3468899999984        544 233456777888888888888766  6778888888888888888888 788888


Q ss_pred             CCCCCCcEEEccCCcccc
Q 044082          128 GNLTNLQSLNLGYNSLYV  145 (243)
Q Consensus       128 ~~l~~L~~L~l~~n~l~~  145 (243)
                      +..+++++++.-.+.+..
T Consensus       108 ~k~~~~k~~e~k~~~~~~  125 (326)
T KOG0473|consen  108 KKEPHPKKNEQKKTEFFR  125 (326)
T ss_pred             cccCCcchhhhccCcchH
Confidence            888888888888887543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=89.07  E-value=0.17  Score=43.03  Aligned_cols=160  Identities=21%  Similarity=0.170  Sum_probs=82.9

Q ss_pred             ceEEEecCCCCCCCCCCCCccccc-chhhccCCCCcEEEccCCCCCCCCcchhh-cCCCCCcEEecCCcc-ccccCCcCC
Q 044082           51 HVIMLNLKYKVDPVCPNRPLRGNI-NSSLLELQHLNYLDLSVNDFLGNPIPEFI-GFFTKLRFLDLSLAN-FSGRIPYQL  127 (243)
Q Consensus        51 ~l~~L~l~~~~~~~~~~~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~l~~L~~L~l~~~~-~~~~~~~~l  127 (243)
                      .|..+|+..|       +.+++.- -..-..+..|++++.+++.-.+...-..+ ....+|+++-+..|. ++......+
T Consensus       269 ~i~~lnl~~c-------~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l  341 (483)
T KOG4341|consen  269 EILKLNLQHC-------NQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTML  341 (483)
T ss_pred             Hhhccchhhh-------ccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhh
Confidence            4677777776       4555432 22224456778887777654322122222 356778888887775 333333333


Q ss_pred             C-CCCCCcEEEccCCccccC--CccccCCCCCCCEEEcCCccc-cCC--cchHHHhhccccccccccccccCCCCCCCCc
Q 044082          128 G-NLTNLQSLNLGYNSLYVS--KFGWLSHLNKLTQLDLDFVDL-SEA--SDWLQVITSLASLRDLYLASSTLPSINRPSL  201 (243)
Q Consensus       128 ~-~l~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~l~~n~l-~~~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~  201 (243)
                      + +++.|+.+++..+.....  +.+.-.+++.|+.+.++.+.. ++.  -.+...-..+..|+.+.++++........ .
T Consensus       342 ~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~L-e  420 (483)
T KOG4341|consen  342 GRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATL-E  420 (483)
T ss_pred             hcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHH-H
Confidence            3 456777777776653321  222234566777777776543 222  11111223445666666766655432210 2


Q ss_pred             ccccCCCCCcEEECCCCc
Q 044082          202 SSMNSSTSLALLDLSSCG  219 (243)
Q Consensus       202 ~~~~~~~~L~~L~L~~n~  219 (243)
                      .+..+ ++|+.+++-+++
T Consensus       421 ~l~~c-~~Leri~l~~~q  437 (483)
T KOG4341|consen  421 HLSIC-RNLERIELIDCQ  437 (483)
T ss_pred             HHhhC-cccceeeeechh
Confidence            23333 667777665553

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=87.75  E-value=0.016  Score=45.40  Aligned_cols=92  Identities=12%  Similarity=0.022  Sum_probs=68.1

Q ss_pred             cCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccc
Q 044082          125 YQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSM  204 (243)
Q Consensus       125 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~  204 (243)
                      ..+......+.||++.|++-.. ...++-+..+..++++.|.+.-.|.   .+.....++++.+..|.....+   .+.+
T Consensus        36 ~ei~~~kr~tvld~~s~r~vn~-~~n~s~~t~~~rl~~sknq~~~~~~---d~~q~~e~~~~~~~~n~~~~~p---~s~~  108 (326)
T KOG0473|consen   36 REIASFKRVTVLDLSSNRLVNL-GKNFSILTRLVRLDLSKNQIKFLPK---DAKQQRETVNAASHKNNHSQQP---KSQK  108 (326)
T ss_pred             hhhhccceeeeehhhhhHHHhh-ccchHHHHHHHHHhccHhhHhhChh---hHHHHHHHHHHHhhccchhhCC---cccc
Confidence            3466677788889988887533 3446666778888999888877765   6677778888888888776544   4777


Q ss_pred             cCCCCCcEEECCCCcccccc
Q 044082          205 NSSTSLALLDLSSCGLSNSA  224 (243)
Q Consensus       205 ~~~~~L~~L~L~~n~i~~~~  224 (243)
                      .. +.++.+++..|.++...
T Consensus       109 k~-~~~k~~e~k~~~~~~~~  127 (326)
T KOG0473|consen  109 KE-PHPKKNEQKKTEFFRKL  127 (326)
T ss_pred             cc-CCcchhhhccCcchHHH
Confidence            77 88999999888876433

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=86.77  E-value=0.46  Score=41.80  Aligned_cols=36  Identities=17%  Similarity=0.153  Sum_probs=17.7

Q ss_pred             CCCEEEcCCccccCCcchHHHhhccccccccccccc
Q 044082          156 KLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASS  191 (243)
Q Consensus       156 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n  191 (243)
                      .+..+++++|.+..+..+.......++|..|+|++|
T Consensus       219 ~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N  254 (585)
T KOG3763|consen  219 EILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN  254 (585)
T ss_pred             ceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence            444455555555554333333344455555555555

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=86.44  E-value=0.59  Score=23.43  Aligned_cols=22  Identities=36%  Similarity=0.298  Sum_probs=16.1

Q ss_pred             CCCcEEECCCCccccccchhHH
Q 044082          208 TSLALLDLSSCGLSNSAYHWLF  229 (243)
Q Consensus       208 ~~L~~L~L~~n~i~~~~~~~l~  229 (243)
                      ++|+.|+|++|.|.+.....+.
T Consensus         2 ~~L~~LdL~~N~i~~~G~~~L~   23 (28)
T smart00368        2 PSLRELDLSNNKLGDEGARALA   23 (28)
T ss_pred             CccCEEECCCCCCCHHHHHHHH
Confidence            5789999999999765544443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	243
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		4e-10
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		4e-04
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		5e-04

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 82/171 (47%), Gaps = 12/171 (7%)
Query: 3   CIEKERQALLMFKQGLVDDCGYLSSWGSDEGRKDCCK--WSGVQCSNRTGHVIMLNLKYK 60
           C  +++QALL  K+ L +    LSSW       DCC   W GV C   T    + NL   
Sbjct: 3   CNPQDKQALLQIKKDLGNPT-TLSSW---LPTTDCCNRTWLGVLCDTDTQTYRVNNL--- 55
Query: 61  VDPVCPNRPLRGNINSSLLELQHLNYLDL-SVNDFLGNPIPEFIGFFTKLRFLDLSLANF 119
            D    N P    I SSL  L +LN+L +  +N+ +G PIP  I   T+L +L ++  N 
Sbjct: 56  -DLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG-PIPPAIAKLTQLHYLYITHTNV 113
Query: 120 SGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEA 170
           SG IP  L  +  L +L+  YN+L  +    +S L  L  +  D   +S A
Sbjct: 114 SGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 70  LRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN 129
           L G I S L    +LN++ LS N   G  IP++IG    L  L LS  +FSG IP +LG+
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTGE-IPKWIGRLENLAILKLSNNSFSGNIPAELGD 536
Query: 130 LTNLQSLNLGYN 141
             +L  L+L  N
Sbjct: 537 CRSLIWLDLNTN 548

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 70  LRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN 129
           L G I S L    +LN++ LS N   G  IP++IG    L  L LS  +FSG IP +LG+
Sbjct: 475 LTGEIPSGLSNCTNLNWISLSNNRLTGE-IPKWIGRLENLAILKLSNNSFSGNIPAELGD 533
Query: 130 LTNLQSLNLGYN 141
             +L  L+L  N
Sbjct: 534 CRSLIWLDLNTN 545

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	243
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-41
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-06
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-27
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-14
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	5e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  149 bits (378), Expect = 2e-41
 Identities = 63/263 (23%), Positives = 101/263 (38%), Gaps = 36/263 (13%)

Query: 3   CIEKERQALLMFKQGLVDDCGYLSSWGSDEGRKDCCKWSGVQCSNRTGHVIMLNLKYKVD 62
            + +E   L+ FK  L D    L  W S++   + C + GV C +    V  ++L     
Sbjct: 9   SLYREIHQLISFKDVLPDK-NLLPDWSSNK---NPCTFDGVTCRD--DKVTSIDLSS--- 59

Query: 63  PVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGR 122
              P       ++SSLL L  L  L LS +   G  +  F      L  LDLS  + SG 
Sbjct: 60  --KPLNVGFSAVSSSLLSLTGLESLFLSNSHING-SVSGF-KCSASLTSLDLSRNSLSGP 115

Query: 123 IP--YQLGNLTNLQSLNLGYNSLYVS-KFGWLSHLNKLTQLDLDFVDLS-EASDWLQVIT 178
           +     LG+ + L+ LN+  N+L    K      LN L  LDL    +S        +  
Sbjct: 116 VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSD 175

Query: 179 SLASLRDLYLA----SSTLPSINRPSLSSMN--------------SSTSLALLDLSSCGL 220
               L+ L ++    S  +      +L  ++                ++L  LD+S   L
Sbjct: 176 GCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKL 235

Query: 221 SNSAYHWLFKISSNLLALDLNSN 243
           S      +    + L  L+++SN
Sbjct: 236 SGDFSRAISTC-TELKLLNISSN 257

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 79.6 bits (197), Expect = 3e-17
 Identities = 53/200 (26%), Positives = 79/200 (39%), Gaps = 37/200 (18%)

Query: 70  LRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN 129
           + G++   +    +L +LD+S N+F    IP  +G  + L+ LD+S    SG     +  
Sbjct: 190 ISGDV--DVSRCVNLEFLDVSSNNFST-GIPF-LGDCSALQHLDISGNKLSGDFSRAIST 245

Query: 130 LTNLQSLNLGYNSLYVSKFGWL--SHLNKLTQLDLDF--------VDLSEASDWLQV--- 176
            T L+ LN+  N       G +    L  L  L L            LS A D L     
Sbjct: 246 CTELKLLNISSNQFV----GPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDL 301

Query: 177 ------------ITSLASLRDLYLASSTL-PSINRPSLSSMNSSTSLALLDLSSCGLSNS 223
                         S + L  L L+S+     +   +L  M     L +LDLS    S  
Sbjct: 302 SGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM---RGLKVLDLSFNEFSGE 358

Query: 224 AYHWLFKISSNLLALDLNSN 243
               L  +S++LL LDL+SN
Sbjct: 359 LPESLTNLSASLLTLDLSSN 378

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 72.6 bits (179), Expect = 6e-15
 Identities = 54/178 (30%), Positives = 78/178 (43%), Gaps = 12/178 (6%)

Query: 70  LRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFI-GFFTKLRFLDLSLANFSGRIPYQLG 128
             G I    L  + L YL L+ N F G  IP+F+ G    L  LDLS  +F G +P   G
Sbjct: 259 FVGPIPPLPL--KSLQYLSLAENKFTG-EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 315

Query: 129 NLTNLQSLNLGYNSLYVS-KFGWLSHLNKLTQLDLDFVDLS-EASDWLQVITSLASLRDL 186
           + + L+SL L  N+         L  +  L  LDL F + S E  + L  +++  SL  L
Sbjct: 316 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA--SLLTL 373

Query: 187 YLASSTLP-SINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
            L+S+     I        N   +L  L L + G +      L    S L++L L+ N
Sbjct: 374 DLSSNNFSGPI--LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC-SELVSLHLSFN 428

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 71.9 bits (177), Expect = 1e-14
 Identities = 51/184 (27%), Positives = 77/184 (41%), Gaps = 25/184 (13%)

Query: 70  LRGNINSSL--LELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQL 127
             G I  +L       L  L L  N F G  IP  +   ++L  L LS    SG IP  L
Sbjct: 380 FSGPILPNLCQNPKNTLQELYLQNNGFTG-KIPPTLSNCSELVSLHLSFNYLSGTIPSSL 438

Query: 128 GNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLS----EASDWLQVITSLASL 183
           G+L+ L+ L L  N L       L ++  L  L LDF DL+            +++  +L
Sbjct: 439 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG------LSNCTNL 492

Query: 184 RDLYLA----SSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALD 239
             + L+    +  +P         +    +LA+L LS+   S +    L     +L+ LD
Sbjct: 493 NWISLSNNRLTGEIP-------KWIGRLENLAILKLSNNSFSGNIPAELGDC-RSLIWLD 544

Query: 240 LNSN 243
           LN+N
Sbjct: 545 LNTN 548

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 70.3 bits (173), Expect = 3e-14
 Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 1/99 (1%)

Query: 70  LRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN 129
             G+ + +      + +LD+S N   G  IP+ IG    L  L+L   + SG IP ++G+
Sbjct: 620 YGGHTSPTFDNNGSMMFLDMSYNMLSGY-IPKEIGSMPYLFILNLGHNDISGSIPDEVGD 678

Query: 130 LTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLS 168
           L  L  L+L  N L       +S L  LT++DL   +LS
Sbjct: 679 LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 69.2 bits (170), Expect = 9e-14
 Identities = 40/178 (22%), Positives = 70/178 (39%), Gaps = 17/178 (9%)

Query: 70  LRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN 129
           L G I S L    +LN++ LS N   G  IP++IG    L  L LS  +FSG IP +LG+
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTGE-IPKWIGRLENLAILKLSNNSFSGNIPAELGD 536

Query: 130 LTNLQSLNLGYNSLYVSKFG----WLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRD 185
             +L  L+L  N       G     +   +     +               I +    ++
Sbjct: 537 CRSLIWLDLNTNLF----NGTIPAAMFKQSGKIAANFIAGKRYVY------IKNDGMKKE 586

Query: 186 LYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
            + A + L          +N  ++    +++S           F  + +++ LD++ N
Sbjct: 587 CHGAGNLL-EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT-FDNNGSMMFLDMSYN 642

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 56.1 bits (136), Expect = 3e-09
 Identities = 13/98 (13%), Positives = 29/98 (29%), Gaps = 9/98 (9%)

Query: 70  LRGNINSSLLELQHLNYLDLSVNDF-LGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLG 128
           + G     +           + N         E +   +     +++   + G       
Sbjct: 570 IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD 629

Query: 129 NLTNLQSLNLGYNSLYVSKFG----WLSHLNKLTQLDL 162
           N  ++  L++ YN L     G     +  +  L  L+L
Sbjct: 630 NNGSMMFLDMSYNMLS----GYIPKEIGSMPYLFILNL 663

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 45.7 bits (109), Expect = 7e-06
 Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 70  LRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPY--QL 127
           + G+I   + +L+ LN LDLS N   G  IP+ +   T L  +DLS  N SG IP   Q 
Sbjct: 668 ISGSIPDEVGDLRGLNILDLSSNKLDG-RIPQAMSALTMLTEIDLSNNNLSGPIPEMGQF 726

Query: 128 GNLTN 132
                
Sbjct: 727 ETFPP 731

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  106 bits (268), Expect = 1e-27
 Identities = 71/252 (28%), Positives = 105/252 (41%), Gaps = 34/252 (13%)

Query: 3   CIEKERQALLMFKQGLVDDCGYLSSWGSDEGRKDCC--KWSGVQCSNRT--GHVIMLNLK 58
           C  +++QALL  K+ L  +   LSSW       DCC   W GV C   T    V  L+L 
Sbjct: 3   CNPQDKQALLQIKKDL-GNPTTLSSWLPTT---DCCNRTWLGVLCDTDTQTYRVNNLDL- 57

Query: 59  YKVDPVCPNRPLRG--NINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSL 116
                      L     I SSL  L +LN+L +   + L  PIP  I   T+L +L ++ 
Sbjct: 58  -------SGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110

Query: 117 ANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEA-SDWLQ 175
            N SG IP  L  +  L +L+  YN+L  +    +S L  L  +  D   +S A  D   
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170

Query: 176 VITSLASLRDLYLA----SSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKI 231
             + L     + ++    +  +P    P+ +++N    LA +DLS   L   A       
Sbjct: 171 SFSKL--FTSMTISRNRLTGKIP----PTFANLN----LAFVDLSRNMLEGDASVLFGSD 220

Query: 232 SSNLLALDLNSN 243
             N   + L  N
Sbjct: 221 -KNTQKIHLAKN 231

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 71.0 bits (175), Expect = 1e-14
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 2/74 (2%)

Query: 70  LRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN 129
           L G+ +      ++   + L+ N      + + +G    L  LDL      G +P  L  
Sbjct: 209 LEGDASVLFGSDKNTQKIHLAKNSLAF-DLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQ 266

Query: 130 LTNLQSLNLGYNSL 143
           L  L SLN+ +N+L
Sbjct: 267 LKFLHSLNVSFNNL 280

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 58.7 bits (143), Expect = 2e-10
 Identities = 27/94 (28%), Positives = 35/94 (37%), Gaps = 4/94 (4%)

Query: 70  LRGNINSSLLELQHL-NYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLG 128
           + G I  S      L   + +S N   G  IP        L F+DLS     G      G
Sbjct: 161 ISGAIPDSYGSFSKLFTSMTISRNRLTG-KIPPTFANL-NLAFVDLSRNMLEGDASVLFG 218

Query: 129 NLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDL 162
           +  N Q ++L  NSL     G +     L  LDL
Sbjct: 219 SDKNTQKIHLAKNSL-AFDLGKVGLSKNLNGLDL 251

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 80.4 bits (199), Expect = 1e-17
 Identities = 37/176 (21%), Positives = 66/176 (37%), Gaps = 6/176 (3%)

Query: 70  LRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN 129
           +         +L  L  L+L  N+ L     +   F T L  L L   +           
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQHNE-LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVK 119

Query: 130 LTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLA 189
             NL +L+L +N L  +K G    L  L +L L    +         I + +SL+ L L+
Sbjct: 120 QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS 179

Query: 190 SSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKIS--SNLLALDLNSN 243
           S+ +   +     ++     L  L L++  L  S    L      +++  L L+++
Sbjct: 180 SNQIKEFSPGCFHAI---GRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS 232

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 78.5 bits (194), Expect = 6e-17
 Identities = 43/174 (24%), Positives = 65/174 (37%), Gaps = 5/174 (2%)

Query: 70  LRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN 129
           LR    ++      L  LD+  N  +    PE       L+ L+L     S         
Sbjct: 37  LRRLPAANFTRYSQLTSLDVGFNT-ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAF 95

Query: 130 LTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLA 189
            TNL  L+L  NS+   K         L  LDL    LS           L +L++L L+
Sbjct: 96  CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKL--GTQVQLENLQELLLS 153

Query: 190 SSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
           ++ + ++    L    +S SL  L+LSS  +   +      I   L  L LN+ 
Sbjct: 154 NNKIQALKSEELDIFANS-SLKKLELSSNQIKEFSPGCFHAI-GRLFGLFLNNV 205

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 75.0 bits (185), Expect = 9e-16
 Identities = 35/164 (21%), Positives = 63/164 (38%), Gaps = 7/164 (4%)

Query: 81  LQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGY 140
             ++  L+L+ N  L          +++L  LD+     S   P     L  L+ LNL +
Sbjct: 24  PTNITVLNLTHN-QLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 82

Query: 141 NSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPS 200
           N L        +    LT+L L    + +  +         +L  L L+ + L S    +
Sbjct: 83  NELSQLSDKTFAFCTNLTELHLMSNSIQKIKN--NPFVKQKNLITLDLSHNGLSSTKLGT 140

Query: 201 LSSMNSSTSLALLDLSSCGLSN-SAYHWLFKISSNLLALDLNSN 243
              +    +L  L LS+  +    +       +S+L  L+L+SN
Sbjct: 141 QVQL---ENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 71.2 bits (175), Expect = 2e-14
 Identities = 38/181 (20%), Positives = 65/181 (35%), Gaps = 10/181 (5%)

Query: 70  LRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN 129
           +    + +   L HL  LDL +N+       +       +  + LS   +          
Sbjct: 393 ISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFAL 452

Query: 130 LTNLQSLNLGYNSLY--VSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLY 187
           + +LQ L L   +L    S       L  LT LDL   +++  +D   ++  L  L  L 
Sbjct: 453 VPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIND--DMLEGLEKLEILD 510

Query: 188 LASSTLPSINRPSLSSMNSS-----TSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNS 242
           L  + L  + + +            + L +L+L S G        +FK    L  +DL  
Sbjct: 511 LQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIP-VEVFKDLFELKIIDLGL 569

Query: 243 N 243
           N
Sbjct: 570 N 570

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 71.2 bits (175), Expect = 2e-14
 Identities = 38/183 (20%), Positives = 62/183 (33%), Gaps = 14/183 (7%)

Query: 70  LRGNINSSLLELQHLNYLDLSVNDFLGNP-IPEFIGFFTKLRFLDLSLANFSGRIPYQLG 128
                 +S   +  L  L L           P        L  LDLS  N +      L 
Sbjct: 442 YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE 501

Query: 129 NLTNLQSLNLGYNSL--------YVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSL 180
            L  L+ L+L +N+L              +L  L+ L  L+L+     E     +V   L
Sbjct: 502 GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV--EVFKDL 559

Query: 181 ASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDL 240
             L+ + L  + L ++     ++     SL  L+L    +++           NL  LD+
Sbjct: 560 FELKIIDLGLNNLNTLPASVFNNQ---VSLKSLNLQKNLITSVEKKVFGPAFRNLTELDM 616

Query: 241 NSN 243
             N
Sbjct: 617 RFN 619

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 66.9 bits (164), Expect = 6e-13
 Identities = 35/185 (18%), Positives = 64/185 (34%), Gaps = 13/185 (7%)

Query: 69  PLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFF--TKLRFLDLSLANFSGRIPYQ 126
            ++         +  L  L L+      +   +       T +R L LS +  S      
Sbjct: 182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241

Query: 127 LGNL--TNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLR 184
              L  TNL  L+L YN+L V      + L +L    L++ ++         +  L ++R
Sbjct: 242 FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS--HSLHGLFNVR 299

Query: 185 DLYLASSTLP------SINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLAL 238
            L L  S         S+ +    S      L  L++    +     +    +  NL  L
Sbjct: 300 YLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL-INLKYL 358

Query: 239 DLNSN 243
            L+++
Sbjct: 359 SLSNS 363

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 66.2 bits (162), Expect = 1e-12
 Identities = 42/179 (23%), Positives = 63/179 (35%), Gaps = 14/179 (7%)

Query: 76  SSLLELQHLNYLDLSVNDFLGNPIPEFIGF-FTKLRFLDLSLANFSGRIPYQLGNLTNLQ 134
              L    +  L LS +         F+G  +T L  LDLS  N +         L  L+
Sbjct: 216 CLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLE 275

Query: 135 SLNLGYNSLYVSKFGWLSHLNKLTQLDLD--FVDLSEASDWLQVITS-----LASLRDLY 187
              L YN++       L  L  +  L+L   F   S +   L  I       L  L  L 
Sbjct: 276 YFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLN 335

Query: 188 LASSTLPSINRPSLSSMNSSTSLALLDLSSCGLS-NSAYHWLFK--ISSNLLALDLNSN 243
           +  + +P I     + +    +L  L LS+   S  +  +  F     S L  L+L  N
Sbjct: 336 MEDNDIPGIKSNMFTGL---INLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN 391

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 65.8 bits (161), Expect = 1e-12
 Identities = 37/160 (23%), Positives = 65/160 (40%), Gaps = 10/160 (6%)

Query: 84  LNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSL 143
               D S        +P+     T +  L+L+               + L SL++G+N++
Sbjct: 6   HEVADCSHLKLTQ--VPD--DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 144 YVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSS 203
              +      L  L  L+L   +LS+ SD  +      +L +L+L S+++  I       
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNELSQLSD--KTFAFCTNLTELHLMSNSIQKIKNNPFVK 119

Query: 204 MNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
                +L  LDLS  GLS++      +   NL  L L++N
Sbjct: 120 Q---KNLITLDLSHNGLSSTKLGTQVQ-LENLQELLLSNN 155

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 57.7 bits (140), Expect = 7e-10
 Identities = 41/165 (24%), Positives = 58/165 (35%), Gaps = 10/165 (6%)

Query: 66  PNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPY 125
                 G     L  L HL+ L+L  N F   P  E      +L+ +DL L N +     
Sbjct: 520 WKHANPGGPIYFLKGLSHLHILNLESNGFDEIP-VEVFKDLFELKIIDLGLNNLNTLPAS 578

Query: 126 QLGNLTNLQSLNLGYNSLYVSKFGWLSH-LNKLTQLDLDFVDLS---EASDWLQVITSLA 181
              N  +L+SLNL  N +   +          LT+LD+ F       E+  W     +  
Sbjct: 579 VFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINET 638

Query: 182 SLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYH 226
                 L+S  L     P          + L D SSC  S   +H
Sbjct: 639 HTNIPELSSHYL-CNTPPHYHGF----PVRLFDTSSCKDSAHHHH 678

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 57.3 bits (139), Expect = 9e-10
 Identities = 40/211 (18%), Positives = 71/211 (33%), Gaps = 41/211 (19%)

Query: 70  LRGNINSSLLELQHLNYLDLSVNDF--------LGNPIPEFIGFFTKLRFLDLSLANFSG 121
           ++   + SL  L ++ YL+L  +          L         +   L  L++   +  G
Sbjct: 284 IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343

Query: 122 RIPYQLGNLTNLQSLNLGYNSLYVSKF----------------------------GWLSH 153
                   L NL+ L+L  +   +                                  S 
Sbjct: 344 IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW 403

Query: 154 LNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALL 213
           L  L  LDL   ++ +     Q    L ++ ++YL+ +    + R S + +    SL  L
Sbjct: 404 LGHLEVLDLGLNEIGQELTG-QEWRGLENIFEIYLSYNKYLQLTRNSFALV---PSLQRL 459

Query: 214 DLSSCGLSN-SAYHWLFKISSNLLALDLNSN 243
            L    L N  +    F+   NL  LDL++N
Sbjct: 460 MLRRVALKNVDSSPSPFQPLRNLTILDLSNN 490

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 80.5 bits (199), Expect = 1e-17
 Identities = 43/164 (26%), Positives = 71/164 (43%), Gaps = 8/164 (4%)

Query: 83  HLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNS 142
               LDLS N  L +        F +L+ LDLS             +L++L +L L  N 
Sbjct: 29  STKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 143 LYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLS 202
           +     G  S L+ L +L     +L+   +    I  L +L++L +A + + S   P   
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLEN--FPIGHLKTLKELNVAHNLIQSFKLP--E 143

Query: 203 SMNSSTSLALLDLSSC---GLSNSAYHWLFKISSNLLALDLNSN 243
             ++ T+L  LDLSS     +  +    L ++    L+LDL+ N
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 73.9 bits (182), Expect = 2e-15
 Identities = 40/175 (22%), Positives = 65/175 (37%), Gaps = 5/175 (2%)

Query: 70  LRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN 129
           LR   + S      L  LDLS  +             + L  L L+              
Sbjct: 40  LRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98

Query: 130 LTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLA 189
           L++LQ L     +L   +   + HL  L +L++    +       +  ++L +L  L L+
Sbjct: 99  LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP-EYFSNLTNLEHLDLS 157

Query: 190 SSTLPSINRPSLSSMNSSTSLAL-LDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
           S+ + SI    L  ++    L L LDLS   ++       FK    L  L L +N
Sbjct: 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ-PGAFK-EIRLHKLTLRNN 210

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 73.9 bits (182), Expect = 2e-15
 Identities = 41/172 (23%), Positives = 70/172 (40%), Gaps = 6/172 (3%)

Query: 73  NINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTN 132
            ++S+ L L+ L +LD   ++               L +LD+S  +           L++
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446

Query: 133 LQSLNLGYNSLYVSKF-GWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASS 191
           L+ L +  NS   +      + L  LT LDL    L + S       SL+SL+ L ++ +
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP--TAFNSLSSLQVLNMSHN 504

Query: 192 TLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
              S++      +    SL +LD S   +  S    L    S+L  L+L  N
Sbjct: 505 NFFSLDTFPYKCL---NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 553

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 72.0 bits (177), Expect = 9e-15
 Identities = 37/182 (20%), Positives = 65/182 (35%), Gaps = 9/182 (4%)

Query: 70  LRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN 129
           L    N  +  L+ L  L+++ N      +PE+    T L  LDLS           L  
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171

Query: 130 LTNLQ----SLNLGYNSLYVSKFGWLSHLNKLTQLDLD--FVDLSEASDWLQVITSLASL 183
           L  +     SL+L  N +   + G    +  L +L L   F  L+     +Q +  L   
Sbjct: 172 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVH 230

Query: 184 RDLYLASSTLPSINRPSLSSMNSSTSLAL--LDLSSCGLSNSAYHWLFKISSNLLALDLN 241
           R +        ++ +   S++    +L +    L+           LF   +N+ +  L 
Sbjct: 231 RLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLV 290

Query: 242 SN 243
           S 
Sbjct: 291 SV 292

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 70.8 bits (174), Expect = 2e-14
 Identities = 39/175 (22%), Positives = 71/175 (40%), Gaps = 8/175 (4%)

Query: 70  LRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQ-LG 128
            +G  + S      L YLDLS N  +   +        +L  LD   +N      +    
Sbjct: 361 FKGCCSQSDFGTTSLKYLDLSFNGVIT--MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 418

Query: 129 NLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYL 188
           +L NL  L++ +    V+  G  + L+ L  L +      E      + T L +L  L L
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP-DIFTELRNLTFLDL 477

Query: 189 ASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
           +   L  ++  + +S+   +SL +L++S     +      +K  ++L  LD + N
Sbjct: 478 SQCQLEQLSPTAFNSL---SSLQVLNMSHNNFFSLDTFP-YKCLNSLQVLDYSLN 528

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 68.1 bits (167), Expect = 2e-13
 Identities = 33/177 (18%), Positives = 64/177 (36%), Gaps = 8/177 (4%)

Query: 70  LRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN 129
           ++   + +   L HL+ L L+ N              + L+ L     N +    + +G+
Sbjct: 64  IQTIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLVAVETNLASLENFPIGH 122

Query: 130 LTNLQSLNLGYNSLYVSKFG-WLSHLNKLTQLDLDFVDLSE-ASDWLQVITSL-ASLRDL 186
           L  L+ LN+ +N +   K   + S+L  L  LDL    +       L+V+  +      L
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182

Query: 187 YLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
            L+ + +  I   +   +     L  L L +   S +      +  + L    L   
Sbjct: 183 DLSLNPMNFIQPGAFKEIR----LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG 235

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 67.0 bits (164), Expect = 5e-13
 Identities = 38/176 (21%), Positives = 66/176 (37%), Gaps = 8/176 (4%)

Query: 70  LRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSL--ANFSGRIPYQL 127
           L          L+  +   L+     G      +     L FLDLS    +F G      
Sbjct: 311 LVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL-PSLEFLDLSRNGLSFKGCCSQSD 369

Query: 128 GNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLY 187
              T+L+ L+L +N +      +L  L +L  LD    +L + S+   V  SL +L  L 
Sbjct: 370 FGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSE-FSVFLSLRNLIYLD 427

Query: 188 LASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
           ++ +          + +   +SL +L ++      +    +F    NL  LDL+  
Sbjct: 428 ISHTHTRVAFNGIFNGL---SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 62.7 bits (153), Expect = 1e-11
 Identities = 30/140 (21%), Positives = 54/140 (38%), Gaps = 5/140 (3%)

Query: 104 GFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLD 163
                 + LDLS         Y   +   LQ L+L    +   + G    L+ L+ L L 
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84

Query: 164 FVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNS 223
              +   +      + L+SL+ L    + L S+    +  +    +L  L+++   + + 
Sbjct: 85  GNPIQSLAL--GAFSGLSSLQKLVAVETNLASLENFPIGHL---KTLKELNVAHNLIQSF 139

Query: 224 AYHWLFKISSNLLALDLNSN 243
                F   +NL  LDL+SN
Sbjct: 140 KLPEYFSNLTNLEHLDLSSN 159

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 54.3 bits (131), Expect = 9e-09
 Identities = 38/186 (20%), Positives = 59/186 (31%), Gaps = 21/186 (11%)

Query: 67  NRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFI--GFFTKLRFLDLS------LAN 118
           N      + + +  L  L    L + +F      E         L  L +       L  
Sbjct: 210 NFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY 269

Query: 119 FSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVIT 178
           +   I      LTN+ S +L   ++   +    S+      L+L      +         
Sbjct: 270 YLDDIIDLFNCLTNVSSFSLVSVTI--ERVKDFSYNFGWQHLELVNCKFGQFPTL----- 322

Query: 179 SLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAY-HWLFKISSNLLA 237
            L SL+ L        S    +  S     SL  LDLS  GLS           +++L  
Sbjct: 323 KLKSLKRLTFT-----SNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKY 377

Query: 238 LDLNSN 243
           LDL+ N
Sbjct: 378 LDLSFN 383

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 2/75 (2%)

Query: 70  LRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN 129
           L     ++   L  L  L++S N+F              L+ LD SL +       +L +
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMSHNNFFS-LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 540

Query: 130 L-TNLQSLNLGYNSL 143
             ++L  LNL  N  
Sbjct: 541 FPSSLAFLNLTQNDF 555

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 77.4 bits (191), Expect = 2e-16
 Identities = 28/182 (15%), Positives = 68/182 (37%), Gaps = 7/182 (3%)

Query: 66  PNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPY 125
                     +     + +  + +  N+    P+   +    KL  L+       G++P 
Sbjct: 289 EQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP- 347

Query: 126 QLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRD 185
             G+   L SLNL YN +      +     ++  L      L    +      S++ +  
Sbjct: 348 AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFD-AKSVSVMSA 406

Query: 186 LYLASSTLPSINRPSLSSMNSS----TSLALLDLSSCGLSNSAYHWLFKISSNLLALDLN 241
           +  + + + S++  +   ++ +     +++ ++LS+  +S      LF   S L +++L 
Sbjct: 407 IDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKE-LFSTGSPLSSINLM 465

Query: 242 SN 243
            N
Sbjct: 466 GN 467

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 66.2 bits (162), Expect = 8e-13
 Identities = 31/240 (12%), Positives = 71/240 (29%), Gaps = 34/240 (14%)

Query: 25  LSSWGSDEGRKDCCKWSGVQCSNRTGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHL 84
            ++W  ++         GV  ++  G V  L+L              G +  ++ +L  L
Sbjct: 57  GANWNFNKELDMWGAQPGVSLNSN-GRVTGLSL--------EGFGASGRVPDAIGQLTEL 107

Query: 85  NYLDLSVNDFLGNP---IPEFIGFFTKLRFLDLSLANFSGRIPYQLG--NLTNLQSLNLG 139
             L L  +    N     P+ I              ++           + ++L    + 
Sbjct: 108 EVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCIN 167

Query: 140 YNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRP 199
            +    S         K TQ+     +++  S     +  L  LR  Y+ +S   + N  
Sbjct: 168 SDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKA---VMRLTKLRQFYMGNSPFVAENIC 224

Query: 200 SL----------------SSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
                                ++   L  +++ +C        +L  +   +  +++  N
Sbjct: 225 EAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL-PEMQLINVACN 283

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 66.2 bits (162), Expect = 9e-13
 Identities = 30/191 (15%), Positives = 67/191 (35%), Gaps = 19/191 (9%)

Query: 67  NRPLRGNINSSLLELQHLNYLDLSVNDFLGNP-------IPEFIGFFTKLRFLDLSLANF 119
           N P    + + L  L  +  ++++ N  +                   K++ + +   N 
Sbjct: 258 NCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL 317

Query: 120 -SGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVIT 178
            +  +   L  +  L  L   YN L   K        KL  L+L +  ++E         
Sbjct: 318 KTFPVETSLQKMKKLGMLECLYNQL-EGKLPAFGSEIKLASLNLAYNQITEIPANF--CG 374

Query: 179 SLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKIS------ 232
               + +L  A + L  I  P++    S + ++ +D S   + +        +       
Sbjct: 375 FTEQVENLSFAHNKLKYI--PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG 432

Query: 233 SNLLALDLNSN 243
            N+ +++L++N
Sbjct: 433 INVSSINLSNN 443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 65.1 bits (159), Expect = 2e-12
 Identities = 20/182 (10%), Positives = 48/182 (26%), Gaps = 15/182 (8%)

Query: 70  LRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN 129
           +  +   +    +     +                    L  +++       ++P  L  
Sbjct: 213 MGNSPFVAENICEAWENENSEYAQQYKT-EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271

Query: 130 LTNLQSLNLGYNSLYV--------SKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLA 181
           L  +Q +N+  N                      K+  + + + +L         +  + 
Sbjct: 272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT-FPVETSLQKMK 330

Query: 182 SLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLN 241
            L  L    + L     P+  S      LA L+L+   ++          +  +  L   
Sbjct: 331 KLGMLECLYNQLEGK-LPAFGSE---IKLASLNLAYNQIT-EIPANFCGFTEQVENLSFA 385

Query: 242 SN 243
            N
Sbjct: 386 HN 387

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.8 bits (153), Expect = 1e-11
 Identities = 31/182 (17%), Positives = 58/182 (31%), Gaps = 25/182 (13%)

Query: 81  LQHLNYLDLSVNDFLGNP------IPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQ 134
           +  ++ +D S N+           +         +  ++LS    S          + L 
Sbjct: 401 VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS 460

Query: 135 SLNLGYNSL-------YVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLY 187
           S+NL  N L          +     +   LT +DL F  L++ SD  +  T+L  L  + 
Sbjct: 461 SINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFR-ATTLPYLVGID 519

Query: 188 LAS---STLPSINRPSLSSMNSSTSLAL---LDLSSCGLSNSAYHWLFKISSNLLALDLN 241
           L+    S  P        + ++     +    D             +     +L  L + 
Sbjct: 520 LSYNSFSKFP----TQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLC-PSLTQLQIG 574

Query: 242 SN 243
           SN
Sbjct: 575 SN 576

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.8 bits (153), Expect = 1e-11
 Identities = 33/183 (18%), Positives = 65/183 (35%), Gaps = 19/183 (10%)

Query: 72  GNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLS-------LANFSGRIP 124
             ++ +  +  +++ ++LS N     P  E     + L  ++L          N      
Sbjct: 423 DPLDPTPFKGINVSSINLSNNQISKFP-KELFSTGSPLSSINLMGNMLTEIPKNSLKDEN 481

Query: 125 YQLGNLTNLQSLNLGYNSL-YVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASL 183
               N   L S++L +N L  +S     + L  L  +DL +   S+         + ++L
Sbjct: 482 ENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQ---PLNSSTL 538

Query: 184 RDLYLASSTLPSINRPSLS---SMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDL 240
           +   + +      NR        +    SL  L + S  +         KI+ N+  LD+
Sbjct: 539 KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVN----EKITPNISVLDI 594

Query: 241 NSN 243
             N
Sbjct: 595 KDN 597

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 39.3 bits (92), Expect = 7e-04
 Identities = 9/74 (12%), Positives = 16/74 (21%), Gaps = 4/74 (5%)

Query: 70  LRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN 129
                   +     L  L +  ND     + E       +  LD+            +  
Sbjct: 554 TLREWPEGITLCPSLTQLQIGSNDIRK--VNE--KITPNISVLDIKDNPNISIDLSYVCP 609

Query: 130 LTNLQSLNLGYNSL 143
                   L Y+  
Sbjct: 610 YIEAGMYMLFYDKT 623

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 76.6 bits (189), Expect = 3e-16
 Identities = 37/175 (21%), Positives = 68/175 (38%), Gaps = 6/175 (3%)

Query: 70  LRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN 129
                +++      L  LDL+      + +P  +   + L+ L LS   F         N
Sbjct: 266 FFNISSNTFHCFSGLQELDLTATHL--SELPSGLVGLSTLKKLVLSANKFENLCQISASN 323

Query: 130 LTNLQSLNLGYNSLYVS-KFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYL 188
             +L  L++  N+  +    G L +L  L +LDL   D+  +      + +L+ L+ L L
Sbjct: 324 FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNL 383

Query: 189 ASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
           + +   S+   +         L LLDL+   L        F+    L  L+L+ +
Sbjct: 384 SYNEPLSLKTEAFKEC---PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS 435

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 70.8 bits (174), Expect = 3e-14
 Identities = 35/162 (21%), Positives = 53/162 (32%), Gaps = 7/162 (4%)

Query: 83  HLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNS 142
               L+ S N  L             L FLDL+             +   L +L L  N 
Sbjct: 34  STECLEFSFN-VLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92

Query: 143 LYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLS 202
           L       LS    L  L      +S        + +  +L  LYL S+ + SI  P   
Sbjct: 93  LIFMAETALSGPKALKHLFFIQTGISSIDF--IPLHNQKTLESLYLGSNHISSIKLPKGF 150

Query: 203 SMNSSTSLALLDLSSCGLSNSAYHWLFKISS-NLLALDLNSN 243
                  L +LD  +  +   +   +  +     L+L+LN N
Sbjct: 151 PT---EKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN 189

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 65.0 bits (159), Expect = 2e-12
 Identities = 43/177 (24%), Positives = 62/177 (35%), Gaps = 10/177 (5%)

Query: 70  LRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN 129
                  +  E   L  LDL+                  L+ L+LS +            
Sbjct: 388 PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG 447

Query: 130 LTNLQSLNLGYNSL---YVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDL 186
           L  LQ LNL  N      + K   L  L +L  L L F DLS         TSL  +  +
Sbjct: 448 LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ--HAFTSLKMMNHV 505

Query: 187 YLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
            L+ + L S +  +LS +        L+L+S  +S      L  I S    ++L  N
Sbjct: 506 DLSHNRLTSSSIEALSHLKGIY----LNLASNHISIILPS-LLPILSQQRTINLRQN 557

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 63.9 bits (156), Expect = 6e-12
 Identities = 33/176 (18%), Positives = 61/176 (34%), Gaps = 11/176 (6%)

Query: 72  GNINSSLLELQHLNYLDLSVNDFLGNPIPEF----IGFFTKLRFLDLSLANFSGRIPYQL 127
             I     +      L+      L           I       F D+   + S  +   L
Sbjct: 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL 251

Query: 128 GNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLY 187
             + +++S+NL  +  +          + L +LDL    LSE    L     L++L+ L 
Sbjct: 252 CEM-SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLV---GLSTLKKLV 307

Query: 188 LASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
           L+++   ++ + S S+     SL  L +              +   NL  LDL+ +
Sbjct: 308 LSANKFENLCQISASNF---PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD 360

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 61.2 bits (149), Expect = 4e-11
 Identities = 30/175 (17%), Positives = 49/175 (28%), Gaps = 6/175 (3%)

Query: 70  LRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN 129
           +      +      L+ L L+ N  L       +     L+ L       S      L N
Sbjct: 69  IYWIHEDTFQSQHRLDTLVLTAN-PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHN 127

Query: 130 LTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLA 189
              L+SL LG N +   K        KL  LD     +   S   + ++SL    +L L 
Sbjct: 128 QKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSK--EDMSSLQQATNLSLN 185

Query: 190 SSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKIS-SNLLALDLNSN 243
            +          +    S     L+          +  L   +  +L        
Sbjct: 186 LNGNDIAGIEPGAF--DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM 238

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.9 bits (138), Expect = 1e-09
 Identities = 30/176 (17%), Positives = 51/176 (28%), Gaps = 6/176 (3%)

Query: 70  LRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN 129
           +       L   + L  L L  N      +P+      KL+ LD             + +
Sbjct: 117 ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFP-TEKLKVLDFQNNAIHYLSKEDMSS 175

Query: 130 LTNLQ--SLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLY 187
           L      SLNL  N +   + G          L+                +++ SL    
Sbjct: 176 LQQATNLSLNLNGNDIAGIEPGAFDSAV-FQSLNFGGTQNLLVIFKGLKNSTIQSLWLGT 234

Query: 188 LASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
                   I+      +    S+  ++L      N + +  F   S L  LDL + 
Sbjct: 235 FEDMDDEDISPAVFEGL-CEMSVESINLQKHYFFNISSNT-FHCFSGLQELDLTAT 288

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.6 bits (137), Expect = 1e-09
 Identities = 36/179 (20%), Positives = 60/179 (33%), Gaps = 13/179 (7%)

Query: 70  LRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLA-NFSGRIPYQLG 128
           +           + L  LD   N  +     E +    +   L L+L  N    I     
Sbjct: 141 ISSIKLPKGFPTEKLKVLDFQNN-AIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAF 199

Query: 129 NLTNLQSLNLGYNSLYVSKFGWLSH--LNKLTQLDLDFVDLSEASDWLQVITSLASLRDL 186
           +    QSLN G     +  F  L +  +  L     + +D  + S  +       S+  +
Sbjct: 200 DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESI 259

Query: 187 YLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSN--SAYHWLFKISSNLLALDLNSN 243
            L      +I+  +       + L  LDL++  LS   S    L    S L  L L++N
Sbjct: 260 NLQKHYFFNISSNTFHCF---SGLQELDLTATHLSELPSGLVGL----STLKKLVLSAN 311

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 54.6 bits (132), Expect = 7e-09
 Identities = 26/140 (18%), Positives = 47/140 (33%), Gaps = 6/140 (4%)

Query: 104 GFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLD 163
                   L+ S              L NL  L+L    +Y          ++L  L L 
Sbjct: 30  TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLT 89

Query: 164 FVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNS 223
              L   ++    ++   +L+ L+   + + SI+   L +     +L  L L S  +S+ 
Sbjct: 90  ANPLIFMAE--TALSGPKALKHLFFIQTGISSIDFIPLHNQ---KTLESLYLGSNHISSI 144

Query: 224 AYHWLFKISSNLLALDLNSN 243
                   +  L  LD  +N
Sbjct: 145 KLP-KGFPTEKLKVLDFQNN 163

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 74.9 bits (184), Expect = 1e-15
 Identities = 22/183 (12%), Positives = 47/183 (25%), Gaps = 17/183 (9%)

Query: 70  LRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN 129
              +  +           +        N           L  ++L       ++P  L +
Sbjct: 455 FANSPFTYDNIAVDWEDANSDYAKQYEN-EELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513

Query: 130 LTNLQSLNLGYNSL---------YVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSL 180
           L  LQSLN+  N           +           K+    + + +L E       +  +
Sbjct: 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASA-SLQKM 572

Query: 181 ASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDL 240
             L  L    + +  +   +  +      L  L L    +           +  +  L  
Sbjct: 573 VKLGLLDCVHNKVRHL--EAFGTN---VKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGF 626

Query: 241 NSN 243
           + N
Sbjct: 627 SHN 629

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 66.8 bits (163), Expect = 6e-13
 Identities = 34/248 (13%), Positives = 80/248 (32%), Gaps = 28/248 (11%)

Query: 14  FKQGLVDDCGYLSSWGSDEGRKDCCKWSGVQCSNRTGHVIMLNLKYKVDPVCPNRPLRGN 73
           +  G +++  +  +W  ++         GV   N  G V  L+L             +G 
Sbjct: 288 YYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNN-GRVTGLSLAG-------FG-AKGR 338

Query: 74  INSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNL 133
           +  ++ +L  L  L    +    +         T     +             L     L
Sbjct: 339 VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRL 398

Query: 134 QSLNLGYNSL-YVSKFGWLSHLNKLTQLDLDFVDLSEASDWL-QVITSLASLRDLYLASS 191
              +L  +++    +   +   ++++  D    +L+    ++ + I  L  L+ +Y A+S
Sbjct: 399 NLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANS 458

Query: 192 TLPSINRPSL----------------SSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNL 235
                N                     S ++   L  ++L +C        +L+ +   L
Sbjct: 459 PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL-PEL 517

Query: 236 LALDLNSN 243
            +L++  N
Sbjct: 518 QSLNIACN 525

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 65.3 bits (159), Expect = 2e-12
 Identities = 28/186 (15%), Positives = 59/186 (31%), Gaps = 19/186 (10%)

Query: 69  PLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLS-------LANFSG 121
               + +    +  + + + LS N+       E     + +  + LS         N   
Sbjct: 660 GRNISCSMDDYKGINASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLMTSIPENSLK 718

Query: 122 RIPYQLGNLTNLQSLNLGYNSL-YVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSL 180
                  N   L +++L +N L  +S     + L  L+ +D+ +   S          + 
Sbjct: 719 PKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPT---QPLNS 775

Query: 181 ASLRDLYLASSTLPSINRPSLS---SMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLA 237
           + L+   +        NR        + +  SL  L + S  +          ++  L  
Sbjct: 776 SQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEK----LTPQLYI 831

Query: 238 LDLNSN 243
           LD+  N
Sbjct: 832 LDIADN 837

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.7 bits (142), Expect = 3e-10
 Identities = 27/184 (14%), Positives = 57/184 (30%), Gaps = 23/184 (12%)

Query: 77  SLLELQHLNYLDLSVNDFLGNPIPEFIGF----FTKLRFLDLSLANFSGRIPYQLGNLTN 132
           +   +  +  +D S N                       + LS               + 
Sbjct: 639 NAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSP 698

Query: 133 LQSLNLGYNSL-------YVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRD 185
           + ++ L  N +          K G   +   LT +DL F  L+  SD  +  T+L  L +
Sbjct: 699 ISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFR-ATTLPYLSN 757

Query: 186 LYLAS---STLPSINRPSLSSMNSSTSLAL---LDLSSCGLSNSAYHWLFKISSNLLALD 239
           + ++    S+ P+       + +   +  +    D     +       +     +L+ L 
Sbjct: 758 MDVSYNCFSSFPT----QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTC-PSLIQLQ 812

Query: 240 LNSN 243
           + SN
Sbjct: 813 IGSN 816

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.4 bits (136), Expect = 2e-09
 Identities = 24/173 (13%), Positives = 52/173 (30%), Gaps = 14/173 (8%)

Query: 81  LQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLS---LANFSGRIPYQLG--NLTNLQS 135
              +  L  S N     P          +  +D S   + +    I   +      N  +
Sbjct: 618 TDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAST 677

Query: 136 LNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWL-----QVITSLASLRDLYLAS 190
           + L YN +        +  + ++ + L    ++   +           +   L  + L  
Sbjct: 678 VTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRF 737

Query: 191 STLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
           + L S+         +   L+ +D+S    S+  +      SS L A  +   
Sbjct: 738 NKLTSL--SDDFRATTLPYLSNMDVSYNCFSS--FPTQPLNSSQLKAFGIRHQ 786

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 41.8 bits (98), Expect = 1e-04
 Identities = 11/97 (11%), Positives = 23/97 (23%), Gaps = 8/97 (8%)

Query: 73  NINSSLLELQHLNYLDLSVNDFLGN-----PIPEFIGFFTKLRFLDLSLANFSGRIPYQL 127
           +  +  L    L    +               P  I     L  L +   +    +  +L
Sbjct: 767 SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKL 825

Query: 128 GNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDF 164
                L  L++  N         +    +     L +
Sbjct: 826 --TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLY 860

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 71.2 bits (175), Expect = 2e-14
 Identities = 39/164 (23%), Positives = 66/164 (40%), Gaps = 8/164 (4%)

Query: 83  HLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNS 142
               +DLS N  L          F++L++LDLS              L +L +L L  N 
Sbjct: 33  STKNIDLSFN-PLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 143 LYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLS 202
           +     G  S L  L  L      L+        I  L +L+ L +A + + S   P  +
Sbjct: 92  IQSFSPGSFSGLTSLENLVAVETKLASLES--FPIGQLITLKKLNVAHNFIHSCKLP--A 147

Query: 203 SMNSSTSLALLDLSSC---GLSNSAYHWLFKISSNLLALDLNSN 243
             ++ T+L  +DLS      ++ +   +L +     L+LD++ N
Sbjct: 148 YFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 68.5 bits (168), Expect = 2e-13
 Identities = 38/171 (22%), Positives = 69/171 (40%), Gaps = 7/171 (4%)

Query: 74  INSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNL 133
           ++++ + L+ L +LD   +               KL +LD+S  N           LT+L
Sbjct: 391 MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL 450

Query: 134 QSLNLGYNSL-YVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASST 192
            +L +  NS    +     ++   LT LDL    L + S    V  +L  L+ L ++ + 
Sbjct: 451 NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW--GVFDTLHRLQLLNMSHNN 508

Query: 193 LPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
           L  ++    + +    SL+ LD S   +  S    L     +L   +L +N
Sbjct: 509 LLFLDSSHYNQL---YSLSTLDCSFNRIETSK-GILQHFPKSLAFFNLTNN 555

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 63.5 bits (155), Expect = 8e-12
 Identities = 38/165 (23%), Positives = 62/165 (37%), Gaps = 10/165 (6%)

Query: 81  LQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLS--LANFSGRIPYQLGNLTNLQSLNL 138
           L  L  L L++N      I         L +LDLS    +FSG   Y      +L+ L+L
Sbjct: 327 LPFLKSLTLTMNKGS---ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL 383

Query: 139 GYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINR 198
            +N   +        L +L  LD     L   ++      SL  L  L ++ +       
Sbjct: 384 SFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTE-FSAFLSLEKLLYLDISYTNTKIDFD 441

Query: 199 PSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
                +   TSL  L ++     ++    +F  ++NL  LDL+  
Sbjct: 442 GIFLGL---TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC 483

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 58.1 bits (141), Expect = 5e-10
 Identities = 31/181 (17%), Positives = 58/181 (32%), Gaps = 8/181 (4%)

Query: 70  LRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN 129
           L    +  + +L  L  L+++ N      +P +    T L  +DLS           L  
Sbjct: 116 LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 175

Query: 130 LTNL----QSLNLGYNSLYVSKFGWLSHLNKLTQLDLD--FVDLSEASDWLQVITSLASL 183
           L        SL++  N +   +      +  L +L L   F   +     LQ +  L   
Sbjct: 176 LRENPQVNLSLDMSLNPIDFIQDQAFQGIK-LHELTLRGNFNSSNIMKTCLQNLAGLHVH 234

Query: 184 RDLYLASSTLPSINRPSLSSMNSSTSLALLDLS-SCGLSNSAYHWLFKISSNLLALDLNS 242
           R +        ++     S M     + + +   +     S     F   +N+ A+ L  
Sbjct: 235 RLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAG 294

Query: 243 N 243
            
Sbjct: 295 V 295

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 37/193 (19%), Positives = 63/193 (32%), Gaps = 23/193 (11%)

Query: 73  NINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRI------PYQ 126
            I     +   L+ L L  N    N +   +     L    L L  F          P  
Sbjct: 195 FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSI 254

Query: 127 LGNLTNLQ--SLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLR 184
           +  L ++      L Y + +         L  ++ + L  V +    D  +      SL 
Sbjct: 255 MEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKH-FKWQSLS 313

Query: 185 DLYLASSTLPSINRPSLSSMNSS-------------TSLALLDLSSCGLSN-SAYHWLFK 230
            +       P+++ P L S+  +              SL+ LDLS   LS      +   
Sbjct: 314 IIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDL 373

Query: 231 ISSNLLALDLNSN 243
            +++L  LDL+ N
Sbjct: 374 GTNSLRHLDLSFN 386

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 39.2 bits (92), Expect = 7e-04
 Identities = 16/74 (21%), Positives = 21/74 (28%), Gaps = 1/74 (1%)

Query: 70  LRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN 129
           L          L  L  L++S N+ L             L  LD S              
Sbjct: 485 LEQISWGVFDTLHRLQLLNMSHNNLLFLD-SSHYNQLYSLSTLDCSFNRIETSKGILQHF 543

Query: 130 LTNLQSLNLGYNSL 143
             +L   NL  NS+
Sbjct: 544 PKSLAFFNLTNNSV 557

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 67.1 bits (164), Expect = 5e-13
 Identities = 33/159 (20%), Positives = 58/159 (36%), Gaps = 3/159 (1%)

Query: 81  LQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQ-LGNLTNLQSLNLG 139
           L  L YL+L  N +    +       T L+ L +        I       LT+L  L + 
Sbjct: 97  LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIK 156

Query: 140 YNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRP 199
             SL   +   L  +  +  L L   + +   +       L+S+R L L  + L      
Sbjct: 157 ALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLE--IFADILSSVRYLELRDTNLARFQFS 214

Query: 200 SLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLAL 238
            L     S+ +  L      L++ +++ L K+   +L L
Sbjct: 215 PLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL 253

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.3 bits (131), Expect = 8e-09
 Identities = 29/179 (16%), Positives = 62/179 (34%), Gaps = 11/179 (6%)

Query: 73  NINSSLLELQHLNYLDLSVNDFLGNPIPEFIGF-------FTKLRFLDLSLANFSGRIPY 125
            +   +LEL  + + D ++N        E              +R L +        +  
Sbjct: 245 KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLST 304

Query: 126 QLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSE-ASDWLQVITSLASLR 184
               L  ++ + +  + +++    +  HL  L  LDL    + E          +  SL+
Sbjct: 305 VYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQ 364

Query: 185 DLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
            L L+ + L S+ +     + +  +L  LD+S             +    +  L+L+S 
Sbjct: 365 TLVLSQNHLRSMQKTG-EILLTLKNLTSLDISRNTFHPMPDS--CQWPEKMRFLNLSST 420

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 51.6 bits (124), Expect = 7e-08
 Identities = 32/140 (22%), Positives = 53/140 (37%), Gaps = 4/140 (2%)

Query: 104 GFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLD 163
           G    ++ LDLS    +      L    NLQ L L  + +   +      L  L  LDL 
Sbjct: 23  GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS 82

Query: 164 FVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNS 223
              LS  S        L+SL+ L L  +   ++   SL    + T+L  L + +    + 
Sbjct: 83  DNHLSSLSS--SWFGPLSSLKYLNLMGNPYQTLGVTSL--FPNLTNLQTLRIGNVETFSE 138

Query: 224 AYHWLFKISSNLLALDLNSN 243
                F   ++L  L++ + 
Sbjct: 139 IRRIDFAGLTSLNELEIKAL 158

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 25/182 (13%), Positives = 55/182 (30%), Gaps = 12/182 (6%)

Query: 74  INSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNL 133
           + S    L +L  L +   +             T L  L++   +        L ++ ++
Sbjct: 115 VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDI 174

Query: 134 QSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDW-LQVITSLASLRDLYLASST 192
             L L  +        +   L+ +  L+L   +L+      L V    + ++ L    S 
Sbjct: 175 HHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV 234

Query: 193 LPSINRPSLSS----MNSSTSLALLDLSSCGLSNSAYHWLFKIS-------SNLLALDLN 241
           L   +   L      +   + +   D +  GL +        +S         +  L + 
Sbjct: 235 LTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIP 294

Query: 242 SN 243
             
Sbjct: 295 QF 296

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 33/173 (19%), Positives = 61/173 (35%), Gaps = 23/173 (13%)

Query: 75  NSSLLELQHLNYLDLSVNDFLGNPIPEFIGFF---TKLRFLDLSLANFSGRIPYQLGNLT 131
           ++       L  L LS N      + +          L  LD+S   F   +P       
Sbjct: 354 SACKGAWPSLQTLVLSQNHL--RSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPE 410

Query: 132 NLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASS 191
            ++ LNL    + V K         L  LD+   +L            L  L++LY++  
Sbjct: 411 KMRFLNLSSTGIRVVKTCIPQT---LEVLDVSNNNLDS------FSLFLPRLQELYISR- 460

Query: 192 TLPSINR-PSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
                N+  +L   +    L ++ +S   L +     +F   ++L  + L++N
Sbjct: 461 -----NKLKTLPDASLFPVLLVMKISRNQLKSVP-DGIFDRLTSLQKIWLHTN 507

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 66.4 bits (162), Expect = 1e-12
 Identities = 42/165 (25%), Positives = 61/165 (36%), Gaps = 5/165 (3%)

Query: 81  LQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRI-PYQLGNLTNLQSLNLG 139
           L     L LS N         F     +L+ L+L        I      NL NL+ L+LG
Sbjct: 23  LNTTERLLLSFNYIRTVTASSFPFL-EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81

Query: 140 YNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRP 199
            + +Y         L  L +L L F  LS+A        +L +L  L L+ + + S+   
Sbjct: 82  SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH 141

Query: 200 SLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISS-NLLALDLNSN 243
              S     SL  +D SS  +     H L  +    L    L +N
Sbjct: 142 --PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAAN 184

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 65.6 bits (160), Expect = 2e-12
 Identities = 36/181 (19%), Positives = 63/181 (34%), Gaps = 26/181 (14%)

Query: 81  LQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGY 140
           L+ L  L+L+ N         F G    L+ L+LS              L  +  ++L  
Sbjct: 289 LKDLKVLNLAYNKINKIADEAFYGL-DNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQK 347

Query: 141 NSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSI---- 196
           N + + +      L KL  LDL    L+        I  + S+ D++L+ + L ++    
Sbjct: 348 NHIAIIQDQTFKFLEKLQTLDLRDNALTT-------IHFIPSIPDIFLSGNKLVTLPKIN 400

Query: 197 --------------NRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNS 242
                         N   L  +     L +L L+    S+ +       + +L  L L  
Sbjct: 401 LTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGE 460

Query: 243 N 243
           N
Sbjct: 461 N 461

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 63.3 bits (154), Expect = 8e-12
 Identities = 33/175 (18%), Positives = 58/175 (33%), Gaps = 12/175 (6%)

Query: 70  LRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFF-TKLRFLDLSLANFSGRIPYQLG 128
           +  +   SL+   H+       ++        F G   + +R LDLS             
Sbjct: 228 ISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE 287

Query: 129 NLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYL 188
            L +L+ LNL YN +          L+ L  L+L +  L E          L  +  + L
Sbjct: 288 TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSS--NFYGLPKVAYIDL 345

Query: 189 ASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
             + +  I   +   +     L  LDL    L+            ++  + L+ N
Sbjct: 346 QKNHIAIIQDQTFKFL---EKLQTLDLRDNALTT------IHFIPSIPDIFLSGN 391

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 56.7 bits (137), Expect = 1e-09
 Identities = 36/171 (21%), Positives = 60/171 (35%), Gaps = 4/171 (2%)

Query: 75  NSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQ 134
            SS   L+ L  L+L           E       LR LDL  +      P     L +L 
Sbjct: 41  ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLF 100

Query: 135 SLNLGYNSLYVS--KFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASST 192
            L L +  L  +  K G+  +L  LT+LDL    +            L SL+ +  +S+ 
Sbjct: 101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH-PSFGKLNSLKSIDFSSNQ 159

Query: 193 LPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
           +  +    L  +    +L+   L++  L +       K  +    + L   
Sbjct: 160 IFLVCEHELEPL-QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEIL 209

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 56.4 bits (136), Expect = 2e-09
 Identities = 46/182 (25%), Positives = 65/182 (35%), Gaps = 25/182 (13%)

Query: 81  LQHLNYLDLSVN--------------DFLGNPIPEFIGFFTKLRFLDLSLANFSG-RIPY 125
           L+ L  LDL  N                 GN +            + LS        I Y
Sbjct: 361 LEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILY 420

Query: 126 QLGNLTNLQSLNLGYNSL-YVSKFGWLSHLNKLTQLDLD---FVDLSEASDWLQVITSLA 181
            L  + +LQ L L  N     S     S    L QL L         E      V   L+
Sbjct: 421 FLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLS 480

Query: 182 SLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLN 241
            L+ LYL  + L S+     S +   T+L  L L+S  L+  +++ L    +NL  LD++
Sbjct: 481 HLQVLYLNHNYLNSLPPGVFSHL---TALRGLSLNSNRLTVLSHNDLP---ANLEILDIS 534

Query: 242 SN 243
            N
Sbjct: 535 RN 536

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 56.0 bits (135), Expect = 3e-09
 Identities = 39/154 (25%), Positives = 57/154 (37%), Gaps = 9/154 (5%)

Query: 73  NINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLS-----LANFSGRIPYQL 127
           +I   LL + HL  L L+ N F      +       L  L L      LA  +       
Sbjct: 417 DILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVF 476

Query: 128 GNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLY 187
             L++LQ L L +N L     G  SHL  L  L L+   L+     L      A+L  L 
Sbjct: 477 EGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV----LSHNDLPANLEILD 532

Query: 188 LASSTLPSINRPSLSSMNSSTSLALLDLSSCGLS 221
           ++ + L + N     S++         +  C LS
Sbjct: 533 ISRNQLLAPNPDVFVSLSVLDITHNKFICECELS 566

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.9 bits (127), Expect = 3e-08
 Identities = 35/187 (18%), Positives = 64/187 (34%), Gaps = 20/187 (10%)

Query: 75  NSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLT--N 132
           +     L+ L  LDLS N      +    G    L+ +D S         ++L  L    
Sbjct: 116 DGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKT 175

Query: 133 LQSLNLGYNSLY-VSKFGWLSHLNKLTQLDLDFVDLSE---------------ASDWLQV 176
           L   +L  NSLY      W   +N    + L+ +D+S                +      
Sbjct: 176 LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFS 235

Query: 177 ITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLL 236
           +     +         +   ++ + + +  S S+  LDLS   + +     +F+   +L 
Sbjct: 236 LILAHHIMGAGFGFHNIKDPDQNTFAGLARS-SVRHLDLSHGFVFSLNSR-VFETLKDLK 293

Query: 237 ALDLNSN 243
            L+L  N
Sbjct: 294 VLNLAYN 300

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.5 bits (126), Expect = 4e-08
 Identities = 38/159 (23%), Positives = 60/159 (37%), Gaps = 13/159 (8%)

Query: 84  LNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQL-GNLTNLQSLNLGYNS 142
            N + LS N      I  F+     L+ L L+   FS     Q      +L+ L LG N 
Sbjct: 403 ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENM 462

Query: 143 LYVSKF-----GWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSIN 197
           L ++            L+ L  L L+   L+       V + L +LR L L S+ L  ++
Sbjct: 463 LQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPP--GVFSHLTALRGLSLNSNRLTVLS 520

Query: 198 RPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLL 236
              L +     +L +LD+S   L          +S   +
Sbjct: 521 HNDLPA-----NLEILDISRNQLLAPNPDVFVSLSVLDI 554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 51.7 bits (124), Expect = 6e-08
 Identities = 39/192 (20%), Positives = 65/192 (33%), Gaps = 31/192 (16%)

Query: 75  NSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQ 134
           +S+   L  + Y+DL  N        +   F  KL+ LDL     +      +  + ++ 
Sbjct: 331 SSNFYGLPKVAYIDLQKNHIAIIQ-DQTFKFLEKLQTLDLRDNALT-----TIHFIPSIP 384

Query: 135 SLNLGYNSL---------------------YVSKFGWLSHLNKLTQLDLDFVDLSEASDW 173
            + L  N L                      +    +L  +  L  L L+    S  S  
Sbjct: 385 DIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSG- 443

Query: 174 LQVITSLASLRDLYLASSTLPSINRPSL--SSMNSSTSLALLDLSSCGLSNSAYHWLFKI 231
            Q  +   SL  L+L  + L       L        + L +L L+   L++     +F  
Sbjct: 444 DQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPG-VFSH 502

Query: 232 SSNLLALDLNSN 243
            + L  L LNSN
Sbjct: 503 LTALRGLSLNSN 514

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.3 bits (110), Expect = 4e-06
 Identities = 37/196 (18%), Positives = 69/196 (35%), Gaps = 23/196 (11%)

Query: 67  NRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGF-FTKLRFLDLSLANFSGRIPY 125
           N+     ++ S  +L  L  +D S N        E        L F  L+  +   R+  
Sbjct: 133 NQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSV 192

Query: 126 QLGNLTN------LQSLNLGYNSLYV------------SKFGWLSHLNKLTQLDLDFVDL 167
             G   N      L+ L++  N   V            S+   L   + +      F ++
Sbjct: 193 DWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNI 252

Query: 168 SEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHW 227
            +         + +S+R L L+   + S+N     ++     L +L+L+   ++  A   
Sbjct: 253 KDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETL---KDLKVLNLAYNKINKIADE- 308

Query: 228 LFKISSNLLALDLNSN 243
            F    NL  L+L+ N
Sbjct: 309 AFYGLDNLQVLNLSYN 324

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.3 bits (110), Expect = 4e-06
 Identities = 29/116 (25%), Positives = 46/116 (39%), Gaps = 5/116 (4%)

Query: 129 NLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYL 188
            L   + L L +N +          L +L  L+L         D  +   +L +LR L L
Sbjct: 22  VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTID-KEAFRNLPNLRILDL 80

Query: 189 ASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYH-WLFKISSNLLALDLNSN 243
            SS +  ++  +   +     L  L L  CGLS++      F+    L  LDL+ N
Sbjct: 81  GSSKIYFLHPDAFQGL---FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN 133

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 62.8 bits (152), Expect = 1e-11
 Identities = 39/173 (22%), Positives = 64/173 (36%), Gaps = 29/173 (16%)

Query: 76  SSLLELQHLNYLDLSVNDFLGNPIP--EFIGFFTKLRFLDLS---LANFSGRIPYQLGNL 130
            +  EL  ++ +  +      + I   + I +   +  L L+   L +        L NL
Sbjct: 37  VTQNELNSIDQIIAN-----NSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-----LTNL 86

Query: 131 TNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLAS 190
            NL  L L  N +       L  L KL  L L+   +S+    +  +  L  L  LYL +
Sbjct: 87  KNLGWLFLDENKI--KDLSSLKDLKKLKSLSLEHNGISD----INGLVHLPQLESLYLGN 140

Query: 191 STLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
           + +  I    LS +   T L  L L    +S+          + L  L L+ N
Sbjct: 141 NKITDI--TVLSRL---TKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKN 185

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 54.0 bits (129), Expect = 1e-08
 Identities = 37/176 (21%), Positives = 66/176 (37%), Gaps = 24/176 (13%)

Query: 76  SSLLELQHLNYLDLSVNDFLGNPIP--EFIGFFTKLRFLDLS---LANFSGRIPYQLGNL 130
           SSL +L+ L  L L       N I     +    +L  L L    + + +      L  L
Sbjct: 103 SSLKDLKKLKSLSLE-----HNGISDINGLVHLPQLESLYLGNNKITDITV-----LSRL 152

Query: 131 TNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLAS 190
           T L +L+L  N +  S    L+ L KL  L L    +S+    L+ +  L +L  L L S
Sbjct: 153 TKLDTLSLEDNQI--SDIVPLAGLTKLQNLYLSKNHISD----LRALAGLKNLDVLELFS 206

Query: 191 STLPSINRPSLSSMNSSTSLALLD---LSSCGLSNSAYHWLFKISSNLLALDLNSN 243
               +      S++    ++   D   ++   +S+   +    +  +L       +
Sbjct: 207 QECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVS 262

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 43.2 bits (101), Expect = 5e-05
 Identities = 24/122 (19%), Positives = 41/122 (33%), Gaps = 24/122 (19%)

Query: 127 LGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDL 186
                     NL   S  V+     + LN + Q+  +  D+      +Q I  L ++  L
Sbjct: 17  DDAFAETIKDNLKKKS--VTDAVTQNELNSIDQIIANNSDIKS----VQGIQYLPNVTKL 70

Query: 187 YLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISS-----NLLALDLN 241
           +L  + L  I       + +  +L  L L    +          +SS      L +L L 
Sbjct: 71  FLNGNKLTDI-----KPLTNLKNLGWLFLDENKIK--------DLSSLKDLKKLKSLSLE 117

Query: 242 SN 243
            N
Sbjct: 118 HN 119

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 62.4 bits (152), Expect = 2e-11
 Identities = 34/163 (20%), Positives = 65/163 (39%), Gaps = 7/163 (4%)

Query: 81  LQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGY 140
           L  L  L L   +        F     +L+ L++S   +   +        NL SL++ +
Sbjct: 175 LHGLIVLRLRHLNINAIRDYSFKRL-YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITH 233

Query: 141 NSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPS 200
            +L    +  + HL  L  L+L +  +S       ++  L  L+++ L    L  +   +
Sbjct: 234 CNLTAVPYLAVRHLVYLRFLNLSYNPISTIEG--SMLHELLRLQEIQLVGGQLAVVEPYA 291

Query: 201 LSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
              +     L +L++S   L+ +    +F    NL  L L+SN
Sbjct: 292 FRGL---NYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSN 330

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 57.0 bits (138), Expect = 9e-10
 Identities = 37/164 (22%), Positives = 64/164 (39%), Gaps = 9/164 (5%)

Query: 81  LQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQ-LGNLTNLQSLNLG 139
           L +L  LD+S N  +      F      L+ L++   N    I ++    L +L+ L L 
Sbjct: 103 LSNLTKLDISENKIVILLDYMFQDL-YNLKSLEVG-DNDLVYISHRAFSGLNSLEQLTLE 160

Query: 140 YNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRP 199
             +L       LSHL+ L  L L  ++++   D       L  L+ L ++         P
Sbjct: 161 KCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD--YSFKRLYRLKVLEISHWPYLDTMTP 218

Query: 200 SLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
           +        +L  L ++ C L+   Y    +    L  L+L+ N
Sbjct: 219 NCLYG---LNLTSLSITHCNLTAVPYL-AVRHLVYLRFLNLSYN 258

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 51.6 bits (124), Expect = 6e-08
 Identities = 30/145 (20%), Positives = 55/145 (37%), Gaps = 8/145 (5%)

Query: 99  IPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLT 158
           +PE  G  T+ R LDL           +  +  +L+ L L  N +   + G  ++L  L 
Sbjct: 26  VPE--GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLR 83

Query: 159 QLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSC 218
            L L    L        V T L++L  L ++ + +  +       +    +L  L++   
Sbjct: 84  TLGLRSNRLKLIPL--GVFTGLSNLTKLDISENKIVILLDYMFQDL---YNLKSLEVGDN 138

Query: 219 GLSNSAYHWLFKISSNLLALDLNSN 243
            L   ++   F   ++L  L L   
Sbjct: 139 DLVYISHR-AFSGLNSLEQLTLEKC 162

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 30/125 (24%), Positives = 48/125 (38%), Gaps = 5/125 (4%)

Query: 67  NRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEF-IGFFTKLRFLDLSLANFSGRIPY 125
           + P    +  + L   +L  L ++  +     +P   +     LRFL+LS    S     
Sbjct: 209 HWPYLDTMTPNCLYGLNLTSLSITHCNL--TAVPYLAVRHLVYLRFLNLSYNPISTIEGS 266

Query: 126 QLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRD 185
            L  L  LQ + L    L V +      LN L  L++    L+   +   V  S+ +L  
Sbjct: 267 MLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEE--SVFHSVGNLET 324

Query: 186 LYLAS 190
           L L S
Sbjct: 325 LILDS 329

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 62.1 bits (151), Expect = 2e-11
 Identities = 45/164 (27%), Positives = 64/164 (39%), Gaps = 10/164 (6%)

Query: 81  LQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQ-LGNLTNLQSLNLG 139
           L  L  L L  N     P   F      L  LDL        I       L NL+ LNLG
Sbjct: 146 LSKLRELWLRNNPIESIPSYAFNRV-PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLG 204

Query: 140 YNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRP 199
             ++       L+ L  L +L++      E          L+SL+ L++ +S +  I R 
Sbjct: 205 MCNI--KDMPNLTPLVGLEELEMSGNHFPEIRP--GSFHGLSSLKKLWVMNSQVSLIERN 260

Query: 200 SLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
           +   +    SL  L+L+   LS S  H LF     L+ L L+ N
Sbjct: 261 AFDGL---ASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 45.5 bits (108), Expect = 6e-06
 Identities = 42/188 (22%), Positives = 66/188 (35%), Gaps = 34/188 (18%)

Query: 81  LQHLNYLDLSVNDFLGNPIPEFIGFF---TKLRFLDLSLANFSGRIPYQ-LGNLTNLQSL 136
           L HL  L L  N      I    G F     L  L+L   N+   IP      L+ L+ L
Sbjct: 98  LHHLEVLQLGRNSI--RQIEV--GAFNGLASLNTLELF-DNWLTVIPSGAFEYLSKLREL 152

Query: 137 NLGYNSLYVSKFGWLSHLNKLTQLDLD------------FVDLSEASD---------WLQ 175
            L  N +        + +  L +LDL             F  L               + 
Sbjct: 153 WLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP 212

Query: 176 VITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNL 235
            +T L  L +L ++ +  P I   S   +   +SL  L + +  +S    +  F   ++L
Sbjct: 213 NLTPLVGLEELEMSGNHFPEIRPGSFHGL---SSLKKLWVMNSQVSLIERN-AFDGLASL 268

Query: 236 LALDLNSN 243
           + L+L  N
Sbjct: 269 VELNLAHN 276

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.4 bits (100), Expect = 7e-05
 Identities = 26/113 (23%), Positives = 45/113 (39%), Gaps = 6/113 (5%)

Query: 131 TNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLAS 190
           +N + LNL  N++ + +     HL+ L  L L    + +          LASL  L L  
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEV--GAFNGLASLNTLELFD 132

Query: 191 STLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
           + L  I   +   +   + L  L L +  + +   +  F    +L+ LDL   
Sbjct: 133 NWLTVIPSGAFEYL---SKLRELWLRNNPIESIPSYA-FNRVPSLMRLDLGEL 181

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 61.8 bits (151), Expect = 2e-11
 Identities = 34/168 (20%), Positives = 70/168 (41%), Gaps = 18/168 (10%)

Query: 76  SSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQS 135
           S L  L  +  L+L  N  L       +   T L +L ++ +      P  + NLT+L S
Sbjct: 126 SPLANLTKMYSLNLGANHNLS--DLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYS 181

Query: 136 LNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPS 195
           L+L YN +       L+ L  L         +++    +  + ++  L  L + ++ +  
Sbjct: 182 LSLNYNQI--EDISPLASLTSLHYFTAYVNQITD----ITPVANMTRLNSLKIGNNKITD 235

Query: 196 INRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
           +    L+++   + L  L++ +  +S+       K  + L  L++ SN
Sbjct: 236 L--SPLANL---SQLTWLEIGTNQISDINA---VKDLTKLKMLNVGSN 275

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 57.2 bits (139), Expect = 8e-10
 Identities = 36/168 (21%), Positives = 73/168 (43%), Gaps = 18/168 (10%)

Query: 76  SSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQS 135
            +  EL+ +  L ++          + I + T L +L+L+    +   P  L NL  L +
Sbjct: 38  VTQEELESITKLVVAGEKVAS---IQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTN 92

Query: 136 LNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPS 195
           L +G N +  +    L +L  L +L L+  ++S+    +  + +L  +  L L ++   S
Sbjct: 93  LYIGTNKI--TDISALQNLTNLRELYLNEDNISD----ISPLANLTKMYSLNLGANHNLS 146

Query: 196 INRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
                LS +++ T L  L ++   + +          ++L +L LN N
Sbjct: 147 D----LSPLSNMTGLNYLTVTESKVKDVTP---IANLTDLYSLSLNYN 187

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 52.9 bits (128), Expect = 2e-08
 Identities = 35/168 (20%), Positives = 71/168 (42%), Gaps = 19/168 (11%)

Query: 76  SSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQS 135
           S L  +  LNYL ++ +          I   T L  L L+        P  L +LT+L  
Sbjct: 149 SPLSNMTGLNYLTVTESKVKD---VTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHY 203

Query: 136 LNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPS 195
                N +  +    ++++ +L  L +    +++    L  + +L+ L  L + ++ +  
Sbjct: 204 FTAYVNQI--TDITPVANMTRLNSLKIGNNKITD----LSPLANLSQLTWLEIGTNQISD 257

Query: 196 INRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
           I   ++  +   T L +L++ S  +S+ +        S L +L LN+N
Sbjct: 258 I--NAVKDL---TKLKMLNVGSNQISDISV---LNNLSQLNSLFLNNN 297

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 51.0 bits (123), Expect = 9e-08
 Identities = 25/153 (16%), Positives = 64/153 (41%), Gaps = 18/153 (11%)

Query: 93  DFLGNPIPEFIGF--FTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGW 150
             L  PI +        +     L  A+ +  +      L ++  L +    +  +    
Sbjct: 6   ATLPAPINQIFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKV--ASIQG 61

Query: 151 LSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSL 210
           + +L  L  L+L+   +++    +  +++L  L +LY+ ++ +  I   +L ++   T+L
Sbjct: 62  IEYLTNLEYLNLNGNQITD----ISPLSNLVKLTNLYIGTNKITDI--SALQNL---TNL 112

Query: 211 ALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
             L L+   +S+ +        + + +L+L +N
Sbjct: 113 RELYLNEDNISDISP---LANLTKMYSLNLGAN 142

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 47.9 bits (115), Expect = 8e-07
 Identities = 27/116 (23%), Positives = 47/116 (40%), Gaps = 15/116 (12%)

Query: 76  SSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLS---LANFSGRIPYQLGNLTN 132
           S L  L  L +L++  N          +   TKL+ L++    +++ S      L NL+ 
Sbjct: 237 SPLANLSQLTWLEIGTNQISD---INAVKDLTKLKMLNVGSNQISDISV-----LNNLSQ 288

Query: 133 LQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYL 188
           L SL L  N L       +  L  LT L L    +++    ++ + SL+ +     
Sbjct: 289 LNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD----IRPLASLSKMDSADF 340

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 47.5 bits (114), Expect = 1e-06
 Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 9/90 (10%)

Query: 76  SSLLELQHLNYLDLSVNDFLGNPI--PEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNL 133
           +++ +L  L  L++       N I     +   ++L  L L+           +G LTNL
Sbjct: 259 NAVKDLTKLKMLNVG-----SNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL 313

Query: 134 QSLNLGYNSLYVSKFGWLSHLNKLTQLDLD 163
            +L L  N +  +    L+ L+K+   D  
Sbjct: 314 TTLFLSQNHI--TDIRPLASLSKMDSADFA 341

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 61.2 bits (149), Expect = 3e-11
 Identities = 41/172 (23%), Positives = 70/172 (40%), Gaps = 6/172 (3%)

Query: 73  NINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTN 132
            ++S+ L L+ L +LD   ++               L +LD+S  +           L++
Sbjct: 92  TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 151

Query: 133 LQSLNLGYNSLYVS-KFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASS 191
           L+ L +  NS   +      + L  LT LDL    L + S       SL+SL+ L ++ +
Sbjct: 152 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP--TAFNSLSSLQVLNMSHN 209

Query: 192 TLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
              S++      +    SL +LD S   +  S    L    S+L  L+L  N
Sbjct: 210 NFFSLDTFPYKCL---NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 56.6 bits (137), Expect = 9e-10
 Identities = 36/165 (21%), Positives = 67/165 (40%), Gaps = 10/165 (6%)

Query: 81  LQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQ--LGNLTNLQSLNL 138
              L YLDLS N  +   +        +L  LD    +   ++       +L NL  L++
Sbjct: 77  TTSLKYLDLSFNGVIT--MSSNFLGLEQLEHLDFQ-HSNLKQMSEFSVFLSLRNLIYLDI 133

Query: 139 GYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINR 198
            +    V+  G  + L+ L  L +      E      + T L +L  L L+   L  ++ 
Sbjct: 134 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP-DIFTELRNLTFLDLSQCQLEQLSP 192

Query: 199 PSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
            + +S+   +SL +L++S     +      +K  ++L  LD + N
Sbjct: 193 TAFNSL---SSLQVLNMSHNNFFSLDTF-PYKCLNSLQVLDYSLN 233

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 49.2 bits (118), Expect = 3e-07
 Identities = 27/113 (23%), Positives = 44/113 (38%), Gaps = 4/113 (3%)

Query: 131 TNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLAS 190
           ++   L L  N L     G    L +LT+L L    LS      Q      SL+ L L+ 
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 191 STLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
           + + +++    S+      L  LD     L   +   +F    NL+ LD++  
Sbjct: 88  NGVITMS----SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 136

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 41.5 bits (98), Expect = 9e-05
 Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 2/98 (2%)

Query: 67  NRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQ 126
           N      +     EL++L +LDLS           F    + L+ L++S  NF     + 
Sbjct: 160 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL-SSLQVLNMSHNNFFSLDTFP 218

Query: 127 LGNLTNLQSLNLGYNSLYVSKFGWLSHLNK-LTQLDLD 163
              L +LQ L+   N +  SK   L H    L  L+L 
Sbjct: 219 YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 256

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 60.4 bits (147), Expect = 4e-11
 Identities = 41/163 (25%), Positives = 54/163 (33%), Gaps = 6/163 (3%)

Query: 81  LQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGY 140
           L  L  LDLS N  L +  P       +L  L L         P     L  LQ L L  
Sbjct: 79  LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 138

Query: 141 NSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPS 200
           N+L          L  LT L L    +S   +  +    L SL  L L  + +  ++  +
Sbjct: 139 NALQALPDDTFRDLGNLTHLFLHGNRISSVPE--RAFRGLHSLDRLLLHQNRVAHVHPHA 196

Query: 201 LSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
              +     L  L L +  LS             L  L LN N
Sbjct: 197 FRDL---GRLMTLYLFANNLSALP-TEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 50.8 bits (122), Expect = 8e-08
 Identities = 31/141 (21%), Positives = 40/141 (28%), Gaps = 7/141 (4%)

Query: 104 GFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLD 163
           G     + + L     S           NL  L L  N L        + L  L QLDL 
Sbjct: 29  GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88

Query: 164 F-VDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSN 222
               L            L  L  L+L    L  +       +    +L  L L    L  
Sbjct: 89  DNAQLRSVDP--ATFHGLGRLHTLHLDRCGLQELGPGLFRGL---AALQYLYLQDNALQA 143

Query: 223 SAYHWLFKISSNLLALDLNSN 243
                 F+   NL  L L+ N
Sbjct: 144 LPDDT-FRDLGNLTHLFLHGN 163

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 60.9 bits (148), Expect = 6e-11
 Identities = 40/167 (23%), Positives = 68/167 (40%), Gaps = 10/167 (5%)

Query: 79  LELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLS--LANFSGRIPYQLGNLTNLQSL 136
           L+L+ L  L  + N   G      +     L FLDLS    +F G         T+L+ L
Sbjct: 322 LKLKSLKRLTFTSN--KGGNAFSEVDL-PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378

Query: 137 NLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSI 196
           +L +N +      +L  L +L  LD    +L + S+   V  SL +L  L ++ +     
Sbjct: 379 DLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSE-FSVFLSLRNLIYLDISHTHTRVA 436

Query: 197 NRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
                + +   +SL +L ++      +    +F    NL  LDL+  
Sbjct: 437 FNGIFNGL---SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 56.6 bits (137), Expect = 1e-09
 Identities = 39/173 (22%), Positives = 72/173 (41%), Gaps = 8/173 (4%)

Query: 72  GNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIP-YQLGNL 130
           G  + S      L YLDLS N  +   +        +L  LD   +N           +L
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVIT--MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 420

Query: 131 TNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLAS 190
            NL  L++ +    V+  G  + L+ L  L +      E      + T L +L  L L+ 
Sbjct: 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP-DIFTELRNLTFLDLSQ 479

Query: 191 STLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
             L  ++  + +S+   +SL +L+++S  L +     +F   ++L  + L++N
Sbjct: 480 CQLEQLSPTAFNSL---SSLQVLNMASNQLKSVP-DGIFDRLTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 55.5 bits (134), Expect = 3e-09
 Identities = 30/140 (21%), Positives = 54/140 (38%), Gaps = 5/140 (3%)

Query: 104 GFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLD 163
                 + LDLS         Y   +   LQ L+L    +   + G    L+ L+ L L 
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84

Query: 164 FVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNS 223
              +   +      + L+SL+ L    + L S+    +  +    +L  L+++   + + 
Sbjct: 85  GNPIQSLAL--GAFSGLSSLQKLVAVETNLASLENFPIGHL---KTLKELNVAHNLIQSF 139

Query: 224 AYHWLFKISSNLLALDLNSN 243
                F   +NL  LDL+SN
Sbjct: 140 KLPEYFSNLTNLEHLDLSSN 159

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 54.3 bits (131), Expect = 9e-09
 Identities = 38/183 (20%), Positives = 61/183 (33%), Gaps = 11/183 (6%)

Query: 70  LRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN 129
           L    N  +  L+ L  L+++ N      +PE+    T L  LDLS           L  
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171

Query: 130 LTNLQ----SLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRD 185
           L  +     SL+L  N +   + G    +  L +L L     S  +     I  LA L  
Sbjct: 172 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDS-LNVMKTCIQGLAGLEV 229

Query: 186 LYLASSTLPSINR---PSLSSMNSSTSLAL--LDLSSCGLSNSAYHWLFKISSNLLALDL 240
             L      +         S++    +L +    L+           LF   +N+ +  L
Sbjct: 230 HRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSL 289

Query: 241 NSN 243
            S 
Sbjct: 290 VSV 292

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.2 bits (115), Expect = 9e-07
 Identities = 27/95 (28%), Positives = 37/95 (38%)

Query: 69  PLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLG 128
             R   N     L  L  L ++ N F  N +P+       L FLDLS        P    
Sbjct: 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491

Query: 129 NLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLD 163
           +L++LQ LN+  N L     G    L  L ++ L 
Sbjct: 492 SLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLH 526

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 33/180 (18%), Positives = 53/180 (29%), Gaps = 25/180 (13%)

Query: 83  HLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNS 142
            +    L+  D+  + I +     T +    L       R+     N    Q L L    
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYN-FGWQHLELVNCK 315

Query: 143 LYVSKFGWLSHLN-------------------KLTQLDLDFVDLSEASDWLQVITSLASL 183
                   L  L                     L  LDL    LS      Q      SL
Sbjct: 316 FGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375

Query: 184 RDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
           + L L+ + + +++    S+      L  LD     L   +   +F    NL+ LD++  
Sbjct: 376 KYLDLSFNGVITMS----SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 431

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 59.1 bits (143), Expect = 2e-10
 Identities = 33/171 (19%), Positives = 71/171 (41%), Gaps = 6/171 (3%)

Query: 73  NINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTN 132
           + + S   L+ L+   +  + F       +  F + +   + +++            ++ 
Sbjct: 267 DFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIF-SNMNIKNFTVSGTRMVHMLCPSKISP 325

Query: 133 LQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASST 192
              L+   N L  + F    HL +L  L L    L E S   ++ T + SL+ L ++ ++
Sbjct: 326 FLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS 385

Query: 193 LPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
           +    +    S   + SL  L++SS  L+++ +     +   +  LDL+SN
Sbjct: 386 VSYDEKKGDCS--WTKSLLSLNMSSNILTDTIFR---CLPPRIKVLDLHSN 431

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 55.3 bits (133), Expect = 4e-09
 Identities = 34/179 (18%), Positives = 62/179 (34%), Gaps = 11/179 (6%)

Query: 67  NRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQ 126
           +       +       ++N  + +V+      +       +    LD S    +  +   
Sbjct: 285 SDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCP-SKISPFLHLDFSNNLLTDTVFEN 343

Query: 127 LGNLTNLQSLNLGYNSL--YVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLR 184
            G+LT L++L L  N L          + +  L QLD+    +S         +   SL 
Sbjct: 344 CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK-GDCSWTKSLL 402

Query: 185 DLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
            L ++S+ L       L        + +LDL S  +  S    + K    L  L++ SN
Sbjct: 403 SLNMSSNILTDTIFRCLPP-----RIKVLDLHSNKIK-SIPKQVVK-LEALQELNVASN 454

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 47.6 bits (113), Expect = 1e-06
 Identities = 26/140 (18%), Positives = 52/140 (37%), Gaps = 7/140 (5%)

Query: 104 GFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLD 163
               K   L++S    S      + +L+ L+ L + +N +            +L  LDL 
Sbjct: 18  DLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS 77

Query: 164 FVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNS 223
              L + S          +L+ L L+ +   ++  P      + + L  L LS+  L  S
Sbjct: 78  HNKLVKIS-----CHPTVNLKHLDLSFNAFDAL--PICKEFGNMSQLKFLGLSTTHLEKS 130

Query: 224 AYHWLFKISSNLLALDLNSN 243
           +   +  ++ + + L L   
Sbjct: 131 SVLPIAHLNISKVLLVLGET 150

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 32/141 (22%), Positives = 55/141 (39%), Gaps = 14/141 (9%)

Query: 81  LQHLNYLDLSVNDFLGNPIPEFIGFF---TKLRFLDLSLANFSGRIPYQL-GNLTNLQSL 136
           L  L  L L +N      + +          L+ LD+S  + S            +L SL
Sbjct: 347 LTELETLILQMNQL--KELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSL 404

Query: 137 NLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSI 196
           N+  N L  + F  L    ++  LDL    +       + +  L +L++L +AS+ L S+
Sbjct: 405 NMSSNILTDTIFRCLPP--RIKVLDLHSNKIKSIP---KQVVKLEALQELNVASNQLKSV 459

Query: 197 NRPSLSSMNSSTSLALLDLSS 217
                  +   TSL  + L +
Sbjct: 460 PDGIFDRL---TSLQKIWLHT 477

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 58.0 bits (140), Expect = 5e-10
 Identities = 38/176 (21%), Positives = 69/176 (39%), Gaps = 6/176 (3%)

Query: 68  RPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQL 127
           R  R     S   L+ L    +    FL +    +  F  ++    LS+++         
Sbjct: 291 RIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVF-AEMNIKMLSISDTPFIHMVCP 349

Query: 128 GNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLY 187
            + ++   LN   N    S F   S L +L  L L    L        +  +++SL  L 
Sbjct: 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLD 409

Query: 188 LASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
           ++ ++L S       +   + S+ +L+LSS  L+ S +  L      +  LDL++N
Sbjct: 410 VSLNSLNSHAYDRTCA--WAESILVLNLSSNMLTGSVFRCL---PPKVKVLDLHNN 460

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 57.6 bits (139), Expect = 5e-10
 Identities = 32/175 (18%), Positives = 59/175 (33%), Gaps = 7/175 (4%)

Query: 76  SSLLELQHLNYLDLSVNDFLGN-PIPEFIGFFTKLRFLDLSLANFSGRIPY----QLGNL 130
             +L +  L  L L   +  G  P P        L  L+L   +++ R  +    Q    
Sbjct: 89  LRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLK 148

Query: 131 TNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLS--EASDWLQVITSLASLRDLYL 188
             L+ L++            +     L+ LDL                     +L+ L L
Sbjct: 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLAL 208

Query: 189 ASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
            ++ + + +    +   +   L  LDLS   L ++A        S L +L+L+  
Sbjct: 209 RNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT 263

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 48.7 bits (116), Expect = 5e-07
 Identities = 33/184 (17%), Positives = 61/184 (33%), Gaps = 16/184 (8%)

Query: 70  LRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFF-----TKLRFLDLSLANFSGRIP 124
           + G     LLE    +   L++ +        ++          L+ L ++ A+      
Sbjct: 107 VTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSC 166

Query: 125 YQLGNLTNLQSLNLGYNSL----YVSKFGWLSHLNKLTQLDLDFVDLSEASDWL-QVITS 179
            Q+     L +L+L  N       +           L  L L    +   S     +  +
Sbjct: 167 EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAA 226

Query: 180 LASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALD 239
              L+ L L+ ++L         S +  + L  L+LS  GL          + + L  LD
Sbjct: 227 RVQLQGLDLSHNSLRDA--AGAPSCDWPSQLNSLNLSFTGLK----QVPKGLPAKLSVLD 280

Query: 240 LNSN 243
           L+ N
Sbjct: 281 LSYN 284

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 22/94 (23%), Positives = 34/94 (36%), Gaps = 5/94 (5%)

Query: 70  LRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN 129
             G  ++       L  LDLS N            + ++L  L+LS      ++P  L  
Sbjct: 216 PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL-- 272

Query: 130 LTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLD 163
              L  L+L YN L   +      L ++  L L 
Sbjct: 273 PAKLSVLDLSYNRL--DRNPSPDELPQVGNLSLK 304

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.4 bits (134), Expect = 4e-09
 Identities = 44/168 (26%), Positives = 69/168 (41%), Gaps = 19/168 (11%)

Query: 76  SSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQS 135
           + L  L +L+ L L+ N          +   T L  LDL+    S   P  L  LT L  
Sbjct: 215 TPLGILTNLDELSLNGNQLKD---IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTE 269

Query: 136 LNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPS 195
           L LG N +  S    L+ L  LT L+L+   L +    +  I++L +L  L L  + +  
Sbjct: 270 LKLGANQI--SNISPLAGLTALTNLELNENQLED----ISPISNLKNLTYLTLYFNNISD 323

Query: 196 INRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
           I    +SS+   T L  L   +  +S+ +        +N+  L    N
Sbjct: 324 I--SPVSSL---TKLQRLFFYNNKVSDVSS---LANLTNINWLSAGHN 363

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 52.7 bits (127), Expect = 3e-08
 Identities = 33/168 (19%), Positives = 65/168 (38%), Gaps = 16/168 (9%)

Query: 76  SSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQS 135
           + L  L  L  L L  N          +   T L  L+L+        P  + NL NL  
Sbjct: 259 APLSGLTKLTELKLGANQISN---ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTY 313

Query: 136 LNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPS 195
           L L +N++  S    +S L KL +L      +S+    +  + +L ++  L    + +  
Sbjct: 314 LTLYFNNI--SDISPVSSLTKLQRLFFYNNKVSD----VSSLANLTNINWLSAGHNQISD 367

Query: 196 INRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
           +    L+++   T +  L L+    +N+  ++   +S      ++   
Sbjct: 368 L--TPLANL---TRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGA 410

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.4 bits (116), Expect = 7e-07
 Identities = 42/168 (25%), Positives = 68/168 (40%), Gaps = 20/168 (11%)

Query: 76  SSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQS 135
           + L  L +L  L L  N        + +   T L  L+LS    S      L  LT+LQ 
Sbjct: 106 TPLANLTNLTGLTLFNNQITD---IDPLKNLTNLNRLELSSNTISDISA--LSGLTSLQQ 160

Query: 136 LNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPS 195
           L+ G     +     L++L  L +LD+    +S+    + V+  L +L  L   ++ +  
Sbjct: 161 LSFGNQVTDLKP---LANLTTLERLDISSNKVSD----ISVLAKLTNLESLIATNNQISD 213

Query: 196 INRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
           I    L  +   T+L  L L+   L +          +NL  LDL +N
Sbjct: 214 I--TPLGIL---TNLDELSLNGNQLKDIG---TLASLTNLTDLDLANN 253

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.5 bits (111), Expect = 3e-06
 Identities = 26/147 (17%), Positives = 54/147 (36%), Gaps = 16/147 (10%)

Query: 76  SSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQS 135
            +   L       L   +              ++  L         +    +  L NL  
Sbjct: 18  FTDTALAEKMKTVLGKTNVTD---TVSQTDLDQVTTLQAD--RLGIKSIDGVEYLNNLTQ 72

Query: 136 LNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPS 195
           +N   N L  +    L +L KL  + ++   +++    +  + +L +L  L L ++ +  
Sbjct: 73  INFSNNQL--TDITPLKNLTKLVDILMNNNQIAD----ITPLANLTNLTGLTLFNNQITD 126

Query: 196 INRPSLSSMNSSTSLALLDLSSCGLSN 222
           I    L ++   T+L  L+LSS  +S+
Sbjct: 127 I--DPLKNL---TNLNRLELSSNTISD 148

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 42.3 bits (100), Expect = 7e-05
 Identities = 21/125 (16%), Positives = 37/125 (29%), Gaps = 15/125 (12%)

Query: 76  SSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQS 135
           S +  L  L  L    N          +   T + +L       S   P  L NLT +  
Sbjct: 325 SPVSSLTKLQRLFFYNNKVSD---VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQ 379

Query: 136 LNLGYNSLY---VSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASST 192
           L L   +     V+    +S  N +  +    +  +        I+   S  +  +  + 
Sbjct: 380 LGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPAT-------ISDGGSYTEPDITWNL 432

Query: 193 LPSIN 197
               N
Sbjct: 433 PSYTN 437

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 53.8 bits (130), Expect = 1e-08
 Identities = 31/175 (17%), Positives = 62/175 (35%), Gaps = 15/175 (8%)

Query: 70  LRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN 129
           L  N    LL    +  L  + N+   + +          + + L+    +       G 
Sbjct: 87  LNNNYVQELLVGPSIETLHAANNNI--SRVSC--SRGQGKKNIYLANNKITMLRDLDEGC 142

Query: 130 LTNLQSLNLGYNSL-YVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYL 188
            + +Q L+L  N +  V+     +  + L  L+L +  + +    ++     A L+ L L
Sbjct: 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD----VKGQVVFAKLKTLDL 198

Query: 189 ASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
           +S+ L  +         S+  +  + L +  L         + S NL   DL  N
Sbjct: 199 SSNKLAFMG----PEFQSAAGVTWISLRNNKLVLIEKA--LRFSQNLEHFDLRGN 247

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 52.3 bits (126), Expect = 3e-08
 Identities = 27/145 (18%), Positives = 53/145 (36%), Gaps = 16/145 (11%)

Query: 99  IPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLT 158
           I E      + +   ++ ++    +     +  N++ L+L  N L       L+   KL 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 159 QLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSC 218
            L+L    L E  D    + SL++LR L L      + N   +  +    S+  L  ++ 
Sbjct: 62  LLNLSSNVLYETLD----LESLSTLRTLDL------NNNY--VQELLVGPSIETLHAANN 109

Query: 219 GLSNSAYHWLFKISSNLLALDLNSN 243
            +S  +             + L +N
Sbjct: 110 NISRVS----CSRGQGKKNIYLANN 130

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 49.2 bits (118), Expect = 3e-07
 Identities = 30/168 (17%), Positives = 61/168 (36%), Gaps = 17/168 (10%)

Query: 76  SSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQS 135
             L  L  L  LDL+      N + E +     +  L  +  N   R+          ++
Sbjct: 74  LDLESLSTLRTLDLN-----NNYVQE-LLVGPSIETLHAA-NNNISRVS--CSRGQGKKN 124

Query: 136 LNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPS 195
           + L  N + + +       +++  LDL   ++   +   ++  S  +L  L L  + +  
Sbjct: 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF-AELAASSDTLEHLNLQYNFIYD 183

Query: 196 INRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
           +             L  LDLSS  L+       F+ ++ +  + L +N
Sbjct: 184 V--KGQVVF---AKLKTLDLSSNKLAFMGPE--FQSAAGVTWISLRNN 224

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 23/144 (15%), Positives = 41/144 (28%), Gaps = 9/144 (6%)

Query: 77  SLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSL 136
                  + YLDL +N+       E       L  L+L   NF   +         L++L
Sbjct: 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ-YNFIYDVK-GQVVFAKLKTL 196

Query: 137 NLGYNSL-YVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPS 195
           +L  N L ++           +T + L    L         +    +L    L  +    
Sbjct: 197 DLSSNKLAFMGP--EFQSAAGVTWISLRNNKLVLIEK---ALRFSQNLEHFDLRGNGFHC 251

Query: 196 INRPSL-SSMNSSTSLALLDLSSC 218
                  S      ++A   +   
Sbjct: 252 GTLRDFFSKNQRVQTVAKQTVKKL 275

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 53.8 bits (129), Expect = 1e-08
 Identities = 31/169 (18%), Positives = 63/169 (37%), Gaps = 10/169 (5%)

Query: 75  NSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQ 134
               + L +   +    +     P    +  F ++  L+L+         Y       +Q
Sbjct: 44  GFEDITLNNQKIVTFKNSTMRKLP-AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQ 102

Query: 135 SLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLP 194
            L +G+N++         ++  LT L L+  DLS       +  +   L  L ++++ L 
Sbjct: 103 KLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR--GIFHNTPKLTTLSMSNNNLE 160

Query: 195 SINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
            I   +  +    TSL  L LSS  L++     +     +L   +++ N
Sbjct: 161 RIEDDTFQAT---TSLQNLQLSSNRLTHVDLSLI----PSLFHANVSYN 202

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 53.4 bits (128), Expect = 2e-08
 Identities = 34/174 (19%), Positives = 58/174 (33%), Gaps = 17/174 (9%)

Query: 70  LRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN 129
           +  N+ S+L     +  LD S N    N +        +L  L L   N +      L N
Sbjct: 199 VSYNLLSTLAIPIAVEELDASHNSI--NVVRG--PVNVELTILKLQHNNLT-DTA-WLLN 252

Query: 130 LTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLA 189
              L  ++L YN L    +     + +L +L +    L   +        + +L+ L L+
Sbjct: 253 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN---LYGQPIPTLKVLDLS 309

Query: 190 SSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
            + L  + R    +      L  L L    +              L  L L+ N
Sbjct: 310 HNHLLHVER----NQPQFDRLENLYLDHNSIVTLKLSTH----HTLKNLTLSHN 355

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 19/140 (13%), Positives = 51/140 (36%), Gaps = 8/140 (5%)

Query: 106 FTKLRFLDLSLANFSGRIPYQL--GNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLD 163
                F D+ +   +  + +      L N + +    +++       L    ++  L+L+
Sbjct: 24  QYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN 83

Query: 164 FVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNS 223
            + + E            +++ LY+  + +  +      ++     L +L L    LS+ 
Sbjct: 84  DLQIEEIDT--YAFAYAHTIQKLYMGFNAIRYLPPHVFQNV---PLLTVLVLERNDLSSL 138

Query: 224 AYHWLFKISSNLLALDLNSN 243
               +F  +  L  L +++N
Sbjct: 139 PRG-IFHNTPKLTTLSMSNN 157

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 40.3 bits (94), Expect = 4e-04
 Identities = 36/163 (22%), Positives = 55/163 (33%), Gaps = 20/163 (12%)

Query: 81  LQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGY 140
              L  L +S N+        F    T L+ L LS +N    +   L  + +L   N+ Y
Sbjct: 146 TPKLTTLSMSNNNLERIEDDTFQAT-TSLQNLQLS-SNRLTHVD--LSLIPSLFHANVSY 201

Query: 141 NSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPS 200
           N L       L+    + +LD     ++              L  L L  + L       
Sbjct: 202 NLL-----STLAIPIAVEELDASHNSINVVRG-----PVNVELTILKLQHNNLTDT--AW 249

Query: 201 LSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
           L +      L  +DLS   L    YH  F     L  L +++N
Sbjct: 250 LLNY---PGLVEVDLSYNELEKIMYH-PFVKMQRLERLYISNN 288

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 39.1 bits (91), Expect = 8e-04
 Identities = 31/174 (17%), Positives = 54/174 (31%), Gaps = 9/174 (5%)

Query: 73  NINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTN 132
            +N     +  L  LDLS N  L   +      F +L  L L   N    +   L     
Sbjct: 292 ALNLYGQPIPTLKVLDLSHNHLLH--VERNQPQFDRLENLYLD-HNSIVTLK--LSTHHT 346

Query: 133 LQSLNLGYNSL-YVSKFGWLSHLNKLTQLDLD--FVDLSEASDWLQVITSLASLRDLYLA 189
           L++L L +N     S      ++ +    D D       +    L    S     D  L 
Sbjct: 347 LKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQ 406

Query: 190 SSTLPSI-NRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNS 242
              L S+  +   +    S +  +  + S     +    +    +  L  ++N 
Sbjct: 407 YIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNE 460

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 53.3 bits (128), Expect = 2e-08
 Identities = 28/195 (14%), Positives = 57/195 (29%), Gaps = 30/195 (15%)

Query: 70  LRGNINSSLLELQHLNYLDLSVNDFLGNPIPEF-IGFFTKLRFLDLSLANFSGRIPYQLG 128
           L  N    LL    +  L  +      N I           + + L+    +       G
Sbjct: 87  LNNNYVQELLVGPSIETLHAA-----NNNISRVSCSRGQGKKNIYLANNKITMLRDLDEG 141

Query: 129 NLTNLQSLNLGYNSL-YVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQ------------ 175
             + +Q L+L  N +  V+     +  + L  L+L +  + +    +             
Sbjct: 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSN 201

Query: 176 -------VITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWL 228
                     S A +  + L ++ L  I      ++  S +L   DL   G         
Sbjct: 202 KLAFMGPEFQSAAGVTWISLRNNKLVLIE----KALRFSQNLEHFDLRGNGFHCGTLRDF 257

Query: 229 FKISSNLLALDLNSN 243
           F  +  +  +   + 
Sbjct: 258 FSKNQRVQTVAKQTV 272

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 50.6 bits (121), Expect = 1e-07
 Identities = 28/178 (15%), Positives = 56/178 (31%), Gaps = 33/178 (18%)

Query: 99  IPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLT 158
           I E      + +   ++ ++    +     +  N++ L+L  N L       L+   KL 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 159 QLDLDFVDLSEASD---------------WLQVITSLASLRDLYLASSTLPSINRPSLSS 203
            L+L    L E  D               ++Q +    S+  L+ A++ +  ++      
Sbjct: 62  LLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQG 121

Query: 204 ------------------MNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
                                 + +  LDL    +    +  L   S  L  L+L  N
Sbjct: 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 47.9 bits (114), Expect = 1e-06
 Identities = 26/184 (14%), Positives = 50/184 (27%), Gaps = 24/184 (13%)

Query: 77  SLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSL 136
                  + YLDL +N+       E       L  L+L   NF   +         L++L
Sbjct: 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ-YNFIYDVK-GQVVFAKLKTL 196

Query: 137 NLGYNSL-YVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPS 195
           +L  N L ++           +T + L    L         +    +L    L  +    
Sbjct: 197 DLSSNKLAFMGP--EFQSAAGVTWISLRNNKLVLIEK---ALRFSQNLEHFDLRGNGFHC 251

Query: 196 INRPSLS---------SMNSSTSLALLDLSSCGLSNSAYHWLFKISS-------NLLALD 239
                           +  +   L   +   C +    ++  +            L+AL 
Sbjct: 252 GTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALK 311

Query: 240 LNSN 243
              +
Sbjct: 312 RKEH 315

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 47.9 bits (114), Expect = 1e-06
 Identities = 29/168 (17%), Positives = 61/168 (36%), Gaps = 17/168 (10%)

Query: 76  SSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQS 135
             L  L  L  LDL+ N        + +     +  L  +  N   R+          ++
Sbjct: 74  LDLESLSTLRTLDLNNNYV------QELLVGPSIETLHAA-NNNISRVS--CSRGQGKKN 124

Query: 136 LNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPS 195
           + L  N + + +       +++  LDL   ++    ++ ++  S  +L  L L  + +  
Sbjct: 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT-VNFAELAASSDTLEHLNLQYNFIYD 183

Query: 196 INRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
           +             L  LDLSS  L+       F+ ++ +  + L +N
Sbjct: 184 V--KGQVVF---AKLKTLDLSSNKLAFMGPE--FQSAAGVTWISLRNN 224

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 47.5 bits (113), Expect = 2e-06
 Identities = 17/167 (10%), Positives = 45/167 (26%), Gaps = 4/167 (2%)

Query: 73  NINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTN 132
            I  +L   Q+L + DL  N F    + +F     +++   ++               T 
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ--TVAKQTVKKLTGQNEEECTV 285

Query: 133 LQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWL--QVITSLASLRDLYLAS 190
               + G          +   L  L + +   +    +          + A  R++    
Sbjct: 286 PTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALK 345

Query: 191 STLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLA 237
               ++         +  +L     +     ++      ++   L  
Sbjct: 346 EQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQ 392

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 52.8 bits (127), Expect = 2e-08
 Identities = 30/167 (17%), Positives = 63/167 (37%), Gaps = 6/167 (3%)

Query: 81  LQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQ-LGNLTNLQSLNLG 139
           L  L +L+L  N +            TKL+ L +   +   +I  +    LT L+ L + 
Sbjct: 123 LSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID 182

Query: 140 YNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRP 199
            + L   +   L  +  ++ L L         +    +   +S+  L L  + L + +  
Sbjct: 183 ASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEI--FVDVTSSVECLELRDTDLDTFHFS 240

Query: 200 SLSSMNSSTSLALLDLSSCGLSN---SAYHWLFKISSNLLALDLNSN 243
            LS+  +++ +      +  +++        L    S LL L+ + N
Sbjct: 241 ELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN 287

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 51.3 bits (123), Expect = 8e-08
 Identities = 28/170 (16%), Positives = 61/170 (35%), Gaps = 11/170 (6%)

Query: 80  ELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLG 139
            L  L  L +   D       +     T L  L++  ++     P  L ++ N+  L L 
Sbjct: 147 HLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH 206

Query: 140 YNSLYVSKFGWLSHLNKLTQLDLDFVDLSE------ASDWLQVITSLASLRDLYLASSTL 193
                +    ++   + +  L+L   DL        ++     +    + R++ +   +L
Sbjct: 207 MKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL 266

Query: 194 PSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
             + +      N  + L  L+ S   L  S    +F   ++L  + L++N
Sbjct: 267 FQVMKLL----NQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 33/140 (23%), Positives = 54/140 (38%), Gaps = 4/140 (2%)

Query: 104 GFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLD 163
           G    ++ LDLS    +      L    NLQ+L L  N +   +    S L  L  LDL 
Sbjct: 49  GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108

Query: 164 FVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNS 223
           +  LS  S        L+SL  L L  +   ++     S  +  T L +L + +      
Sbjct: 109 YNYLSNLSS--SWFKPLSSLTFLNLLGNPYKTL--GETSLFSHLTKLQILRVGNMDTFTK 164

Query: 224 AYHWLFKISSNLLALDLNSN 243
                F   + L  L+++++
Sbjct: 165 IQRKDFAGLTFLEELEIDAS 184

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 34/174 (19%), Positives = 58/174 (33%), Gaps = 17/174 (9%)

Query: 70  LRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN 129
           +  N+ S+L     +  LD S N    N +        +L  L L   N +      L N
Sbjct: 193 VSYNLLSTLAIPIAVEELDASHNSI--NVVRG--PVNVELTILKLQHNNLT-DTA-WLLN 246

Query: 130 LTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLA 189
              L  ++L YN L    +     + +L +L +    L   +        + +L+ L L+
Sbjct: 247 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN---LYGQPIPTLKVLDLS 303

Query: 190 SSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
            + L  + R    +      L  L L    +              L  L L+ N
Sbjct: 304 HNHLLHVER----NQPQFDRLENLYLDHNSIVTLKLSTH----HTLKNLTLSHN 349

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 51.2 bits (123), Expect = 7e-08
 Identities = 30/178 (16%), Positives = 62/178 (34%), Gaps = 7/178 (3%)

Query: 66  PNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPY 125
           P +P    I+S+L        + + +         E I      + +    +        
Sbjct: 5   PRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITL-NNQKIVTFKNSTMRKLPAA 63

Query: 126 QLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRD 185
            L +   ++ LNL    +        ++ + + +L + F  +        V  ++  L  
Sbjct: 64  LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP--HVFQNVPLLTV 121

Query: 186 LYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
           L L  + L S+ R    +      L  L +S+  L        F+ +++L  L L+SN
Sbjct: 122 LVLERNDLSSLPRGIFHNT---PKLTTLSMSNNNLERIEDD-TFQATTSLQNLQLSSN 175

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.3 bits (100), Expect = 7e-05
 Identities = 33/163 (20%), Positives = 57/163 (34%), Gaps = 20/163 (12%)

Query: 81  LQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGY 140
           +  L  L L  ND    P   F     KL  L +S  N            T+LQ+L L  
Sbjct: 116 VPLLTVLVLERNDLSSLPRGIFHNT-PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS 174

Query: 141 NSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPS 200
           N L       +     L   ++ +  LS        +    ++ +L  + +++  +  P 
Sbjct: 175 NRLTHVDLSLIP---SLFHANVSYNLLST-------LAIPIAVEELDASHNSINVVRGPV 224

Query: 201 LSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
                    L +L L    L+++A          L+ +DL+ N
Sbjct: 225 NV------ELTILKLQHNNLTDTA---WLLNYPGLVEVDLSYN 258

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 52.6 bits (127), Expect = 2e-08
 Identities = 29/152 (19%), Positives = 55/152 (36%), Gaps = 19/152 (12%)

Query: 76  SSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQS 135
                L HL ++ +         +P+ +  F  L  L L+       +P  + +L  L+ 
Sbjct: 98  DQAFRLSHLQHMTIDAAGL--MELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRE 154

Query: 136 LNLGYNSL---------YVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDL 186
           L++                   G    L  L  L L++  +         I +L +L+ L
Sbjct: 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS---IANLQNLKSL 211

Query: 187 YLASSTLPSINRPSLSSMNSSTSLALLDLSSC 218
            + +S L ++  P++  +     L  LDL  C
Sbjct: 212 KIRNSPLSALG-PAIHHL---PKLEELDLRGC 239

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 52.3 bits (126), Expect = 3e-08
 Identities = 24/153 (15%), Positives = 50/153 (32%), Gaps = 21/153 (13%)

Query: 79  LELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNL 138
                   L+L          P+     + L+ + +  A     +P  +     L++L L
Sbjct: 78  ATQPGRVALELRSVPL--PQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTL 134

Query: 139 GYNSLYV--SKFG--------WLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYL 188
             N L    +            +    +LT+L                   L +L+ L L
Sbjct: 135 ARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDA----SGEHQGLVNLQSLRL 190

Query: 189 ASSTLPSINRPSLSSMNSSTSLALLDLSSCGLS 221
             + + S+   S++++    +L  L + +  LS
Sbjct: 191 EWTGIRSLP-ASIANL---QNLKSLKIRNSPLS 219

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 49.9 bits (120), Expect = 2e-07
 Identities = 34/158 (21%), Positives = 49/158 (31%), Gaps = 30/158 (18%)

Query: 76  SSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN------ 129
            ++ +   L  L L+ N      +P  I    +LR L +        +P  L +      
Sbjct: 121 DTMQQFAGLETLTLARNPL--RALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178

Query: 130 ---LTNLQSLNLGYNSLYV--SKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLR 184
              L NLQSL L +  +    +      +L  L  L +    LS        I  L  L 
Sbjct: 179 HQGLVNLQSLRLEWTGIRSLPASIA---NLQNLKSLKIRNSPLSALGP---AIHHLPKLE 232

Query: 185 DLYLAS----STLPSINRPSLSSMNSSTSLALLDLSSC 218
           +L L         P    P          L  L L  C
Sbjct: 233 ELDLRGCTALRNYP----PIFGGR---APLKRLILKDC 263

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 47.2 bits (113), Expect = 2e-06
 Identities = 19/99 (19%), Positives = 33/99 (33%), Gaps = 1/99 (1%)

Query: 76  SSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQS 135
            ++  L  L  LDL     L N  P   G    L+ L L   +    +P  +  LT L+ 
Sbjct: 223 PAIHHLPKLEELDLRGCTALRN-YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEK 281

Query: 136 LNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWL 174
           L+L            ++ L     + +     ++     
Sbjct: 282 LDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHR 320

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 52.3 bits (126), Expect = 3e-08
 Identities = 35/185 (18%), Positives = 61/185 (32%), Gaps = 19/185 (10%)

Query: 67  NRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQ 126
           N            +   LNYL +S        IP+       L  L L            
Sbjct: 157 NPLENSGFEPGAFDGLKLNYLRISEAKL--TGIPK--DLPETLNELHLDHNKIQAIELED 212

Query: 127 LGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDL 186
           L   + L  L LG+N + + + G LS L  L +L LD   LS     L     L  L+ +
Sbjct: 213 LLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLP---DLKLLQVV 269

Query: 187 YLASSTLPSINRPSLSSMN---SSTSLALLDLSS-----CGLSNSAYHWLFKISSNLLAL 238
           YL ++ +  +       +           + L +       +  + +  +    ++ LA+
Sbjct: 270 YLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCV----TDRLAI 325

Query: 239 DLNSN 243
              + 
Sbjct: 326 QFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 36/189 (19%), Positives = 60/189 (31%), Gaps = 28/189 (14%)

Query: 75  NSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQ 134
                 LQHL  L L  N         F     KL+ L +S  +    IP  L   ++L 
Sbjct: 71  KDDFKGLQHLYALVLVNNKISKIHEKAFSPL-RKLQKLYISKNHLV-EIPPNL--PSSLV 126

Query: 135 SLNLGYNSLYVSKFGWLSHLNKLTQLDLD-------------FVDLSEASDWLQV--ITS 179
            L +  N +     G  S L  +  +++              F  L      +    +T 
Sbjct: 127 ELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG 186

Query: 180 L-----ASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSN 234
           +      +L +L+L  + + +I    L      + L  L L    +              
Sbjct: 187 IPKDLPETLNELHLDHNKIQAIELEDLLRY---SKLYRLGLGHNQIRMIENG-SLSFLPT 242

Query: 235 LLALDLNSN 243
           L  L L++N
Sbjct: 243 LRELHLDNN 251

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.1 bits (123), Expect = 3e-08
 Identities = 20/149 (13%), Positives = 49/149 (32%), Gaps = 15/149 (10%)

Query: 76  SSLLELQHLNYLDLSVNDFLGNPIP--EFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNL 133
           + +    ++  L ++              I   + L  L +   + +      L  LT+L
Sbjct: 60  TGIEYAHNIKDLTIN-----NIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114

Query: 134 QSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTL 193
             L++ +++   S    ++ L K+  +DL +         +  + +L  L+ L +    +
Sbjct: 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD---IMPLKTLPELKSLNIQFDGV 171

Query: 194 PSINRPSLSSMNSSTSLALLDLSSCGLSN 222
                  +        L  L   S  +  
Sbjct: 172 HDYR--GIEDF---PKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 23/116 (19%), Positives = 51/116 (43%), Gaps = 10/116 (8%)

Query: 128 GNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLY 187
             + +L  + L   +  V+    + + + +  L ++ +  +        I+ L++L  L 
Sbjct: 41  AQMNSLTYITLANIN--VTDLTGIEYAHNIKDLTINNIHATN----YNPISGLSNLERLR 94

Query: 188 LASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
           +    + S   P+LS +   TSL LLD+S     +S    +  +   + ++DL+ N
Sbjct: 95  IMGKDVTSDKIPNLSGL---TSLTLLDISHSAHDDSILTKINTL-PKVNSIDLSYN 146

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 52.1 bits (125), Expect = 4e-08
 Identities = 34/134 (25%), Positives = 54/134 (40%), Gaps = 8/134 (5%)

Query: 81  LQHLNYLDLSVNDFLGNPIPE--FIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNL 138
           +  L  LDL     L   I E  F G  + LR+L+L++ N    IP  L  L  L  L+L
Sbjct: 159 IPSLRRLDLGELKRLSY-ISEGAFEGL-SNLRYLNLAMCNLR-EIPN-LTPLIKLDELDL 214

Query: 139 GYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINR 198
             N L   + G    L  L +L +    +           +L SL ++ LA + L  +  
Sbjct: 215 SGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIER--NAFDNLQSLVEINLAHNNLTLLPH 272

Query: 199 PSLSSMNSSTSLAL 212
              + ++    + L
Sbjct: 273 DLFTPLHHLERIHL 286

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 49/170 (28%), Positives = 69/170 (40%), Gaps = 12/170 (7%)

Query: 76  SSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQ-LGNLTNLQ 134
           +S   L+HL  L LS N      I  F G    L  L+L   N    IP      L+ L+
Sbjct: 82  NSFKHLRHLEILQLSRNHIRTIEIGAFNGL-ANLNTLELF-DNRLTTIPNGAFVYLSKLK 139

Query: 135 SLNLGYNSLYVSKFGWLSHLNKLTQLDLDFV-DLSEASDWLQVITSLASLRDLYLASSTL 193
            L L  N +        + +  L +LDL  +  LS  S+       L++LR L LA   L
Sbjct: 140 ELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE--GAFEGLSNLRYLNLAMCNL 197

Query: 194 PSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
             I  P+L+ +     L  LDLS   LS       F+   +L  L +  +
Sbjct: 198 REI--PNLTPL---IKLDELDLSGNHLSAIRPGS-FQGLMHLQKLWMIQS 241

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 27/113 (23%), Positives = 42/113 (37%), Gaps = 6/113 (5%)

Query: 131 TNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLAS 190
           TN + LNL  N + + K     HL  L  L L    +            LA+L  L L  
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEI--GAFNGLANLNTLELFD 121

Query: 191 STLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
           + L +I   +   +   + L  L L +  + +   +  F    +L  LDL   
Sbjct: 122 NRLTTIPNGAFVYL---SKLKELWLRNNPIESIPSYA-FNRIPSLRRLDLGEL 170

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 51.2 bits (123), Expect = 6e-08
 Identities = 37/173 (21%), Positives = 64/173 (36%), Gaps = 29/173 (16%)

Query: 76  SSLLELQHLNYLDLSVNDFLGNPIP--EFIGFFTKLRFLDLS---LANFSGRIPYQLGNL 130
            +  EL  ++ +  +      + I   + I +   +  L L+   L +        L NL
Sbjct: 40  VTQNELNSIDQIIAN-----NSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-----LANL 89

Query: 131 TNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLAS 190
            NL  L L  N +       L  L KL  L L+   +S+    +  +  L  L  LYL +
Sbjct: 90  KNLGWLFLDENKV--KDLSSLKDLKKLKSLSLEHNGISD----INGLVHLPQLESLYLGN 143

Query: 191 STLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
           + +  I     + ++  T L  L L    +S+          + L  L L+ N
Sbjct: 144 NKITDI-----TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKN 188

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 35/144 (24%), Positives = 56/144 (38%), Gaps = 21/144 (14%)

Query: 76  SSLLELQHLNYLDLSVNDFLGNPI--PEFIGFFTKLRFLDLS---LANFSGRIPYQLGNL 130
           SSL +L+ L  L L       N I     +    +L  L L    + + +      L  L
Sbjct: 106 SSLKDLKKLKSLSLE-----HNGISDINGLVHLPQLESLYLGNNKITDITV-----LSRL 155

Query: 131 TNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLAS 190
           T L +L+L  N +  S    L+ L KL  L L    +S+    L+ +  L +L  L L S
Sbjct: 156 TKLDTLSLEDNQI--SDIVPLAGLTKLQNLYLSKNHISD----LRALAGLKNLDVLELFS 209

Query: 191 STLPSINRPSLSSMNSSTSLALLD 214
               +      S++    ++   D
Sbjct: 210 QECLNKPINHQSNLVVPNTVKNTD 233

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 51.2 bits (123), Expect = 7e-08
 Identities = 37/172 (21%), Positives = 69/172 (40%), Gaps = 11/172 (6%)

Query: 76  SSLLELQHLNYLDLSVNDFLGNPIPE--FIGFFTKLRFLDLSLANFSGRIPYQLGNLTNL 133
           S    L  +  ++L  N    + I    F G   KL ++ ++  N +  IP   G   +L
Sbjct: 139 SVFNGLNQMIVVELGTNPLKSSGIENGAFQGM-KKLSYIRIADTNIT-TIP--QGLPPSL 194

Query: 134 QSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTL 193
             L+L  N +       L  LN L +L L F  +S   +    + +   LR+L+L ++ L
Sbjct: 195 TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN--GSLANTPHLRELHLNNNKL 252

Query: 194 PSINRPSLSSMNSSTSLALLD--LSSCGLSNSAYHWLFKISSNLLALDLNSN 243
             +    L+       + L +  +S+ G ++          ++   + L SN
Sbjct: 253 VKV-PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN 303

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 34/169 (20%), Positives = 61/169 (36%), Gaps = 11/169 (6%)

Query: 75  NSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQ 134
           +     L++L+ L L  N         F     KL  L LS  N    +P ++     LQ
Sbjct: 69  DGDFKNLKNLHTLILINNKISKISPGAFAPL-VKLERLYLS-KNQLKELPEKM--PKTLQ 124

Query: 135 SLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLP 194
            L +  N +   +    + LN++  ++L    L  +         +  L  + +A + + 
Sbjct: 125 ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184

Query: 195 SINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
           +I +          SL  L L    ++        K  +NL  L L+ N
Sbjct: 185 TIPQGLPP------SLTELHLDGNKITKVDAA-SLKGLNNLAKLGLSFN 226

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 51.3 bits (122), Expect = 8e-08
 Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 7/116 (6%)

Query: 73  NINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTN 132
             +   +E   +  L L+  D     +   +     +  LDLS  N    +P  L  L  
Sbjct: 432 ENSVLKMEYADVRVLHLAHKDLT---VLCHLEQLLLVTHLDLS-HNRLRALPPALAALRC 487

Query: 133 LQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYL 188
           L+ L    N+L       +++L +L +L L    L +++  +Q + S   L  L L
Sbjct: 488 LEVLQASDNAL--ENVDGVANLPRLQELLLCNNRLQQSAA-IQPLVSCPRLVLLNL 540

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 50.8 bits (122), Expect = 9e-08
 Identities = 37/173 (21%), Positives = 78/173 (45%), Gaps = 26/173 (15%)

Query: 76  SSLLELQHLNYLDLSVNDFLGNPIPEFIGF--FTKLRFLDLS---LANFSGRIPYQLGNL 130
           S++  LQ +  LDL+        I +       + L+ L L    + N S      L  L
Sbjct: 101 SAIAGLQSIKTLDLT-----STQITDVTPLAGLSNLQVLYLDLNQITNISP-----LAGL 150

Query: 131 TNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLAS 190
           TNLQ L++G   +  S    L++L+KLT L  D   +S+    +  + SL +L +++L +
Sbjct: 151 TNLQYLSIGNAQV--SDLTPLANLSKLTTLKADDNKISD----ISPLASLPNLIEVHLKN 204

Query: 191 STLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
           + +  +     S + ++++L ++ L++  ++N    +   +    +    +  
Sbjct: 205 NQISDV-----SPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGA 252

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 48.9 bits (117), Expect = 4e-07
 Identities = 36/171 (21%), Positives = 68/171 (39%), Gaps = 25/171 (14%)

Query: 76  SSLLELQHLNYLDLSVNDFLGNPIP--EFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNL 133
            +  +L  +  L        G  +   E + +   L  L+L     +   P  L NLT +
Sbjct: 35  VTQADLDGITTLSAF-----GTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKI 87

Query: 134 QSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTL 193
             L L  N L       ++ L  +  LDL    +++    +  +  L++L+ LYL  + +
Sbjct: 88  TELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITD----VTPLAGLSNLQVLYLDLNQI 141

Query: 194 PSINRPSLSSMNSSTSLALLDLSSCGLSN-SAYHWLFKISSNLLALDLNSN 243
            +I    L+ +   T+L  L + +  +S+ +    L    S L  L  + N
Sbjct: 142 TNI--SPLAGL---TNLQYLSIGNAQVSDLTPLANL----SKLTTLKADDN 183

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.5 bits (116), Expect = 6e-07
 Identities = 31/164 (18%), Positives = 55/164 (33%), Gaps = 27/164 (16%)

Query: 80  ELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLG 139
              HL  L  S N      +PE       L   + +L   S   P        L+ L + 
Sbjct: 89  LPPHLESLVASCNSL--TELPELPQSLKSLLVDNNNLKALSDLPP-------LLEYLGVS 139

Query: 140 YNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRP 199
            N L   K   L + + L  +D+D   L +      +     SL  +   ++ L  +  P
Sbjct: 140 NNQL--EKLPELQNSSFLKIIDVDNNSLKK------LPDLPPSLEFIAAGNNQLEEL--P 189

Query: 200 SLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
            L ++     L  +   +  L       L  +  +L ++   +N
Sbjct: 190 ELQNL---PFLTAIYADNNSLKK-----LPDLPLSLESIVAGNN 225

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 38/180 (21%), Positives = 62/180 (34%), Gaps = 33/180 (18%)

Query: 77  SLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSL 136
            L     L  +D+       N + +       L F+          +P +L NL  L ++
Sbjct: 148 ELQNSSFLKIIDVD-----NNSLKKLPDLPPSLEFIAAGNNQLE-ELP-ELQNLPFLTAI 200

Query: 137 NLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSI 196
               NSL             L  +      L E    L  + +L  L  +Y  ++ L ++
Sbjct: 201 YADNNSLKKLP----DLPLSLESIVAGNNILEE----LPELQNLPFLTTIYADNNLLKTL 252

Query: 197 NR--PSLSSMNSS-----------TSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
               PSL ++N              SL  LD+S    S      L ++  NL  L+ +SN
Sbjct: 253 PDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSG-----LSELPPNLYYLNASSN 307

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 48.2 bits (115), Expect = 9e-07
 Identities = 39/163 (23%), Positives = 58/163 (35%), Gaps = 5/163 (3%)

Query: 83  HLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQL-GNLTNLQSLNLGYN 141
           H+NY+DLS+N         F      L+FL +        I       L++L  L L YN
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRL-QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 142 SLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSL 201
                + G  + L  L  L L   +L  A         L SL  L L  + +  I   S 
Sbjct: 90  QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149

Query: 202 SSMNSSTSLALLDLSSCGLSNS-AYHWLFKISSNLLALDLNSN 243
               +     +LDL+   + +      L     +   L L+S 
Sbjct: 150 F--LNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSI 190

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 47.8 bits (114), Expect = 1e-06
 Identities = 41/210 (19%), Positives = 71/210 (33%), Gaps = 26/210 (12%)

Query: 51  HVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLR 110
           H  +L L            L      +  +   +  LDLS N F  +    F       +
Sbjct: 181 HFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTK 240

Query: 111 FLDLSLANFSGRIPYQLGN--------------LTNLQSLNLGYNSLYVSKFGWLSHLNK 156
              L L+N                          + +++ +L  + ++       SH   
Sbjct: 241 IQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTD 300

Query: 157 LTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLS 216
           L QL L   ++++  D       L  L  L L+ + L SI+     ++     L +LDLS
Sbjct: 301 LEQLTLAQNEINKIDD--NAFWGLTHLLKLNLSQNFLGSIDSRMFENL---DKLEVLDLS 355

Query: 217 SC---GLSNSAYHWLFKISSNLLALDLNSN 243
                 L + ++  L     NL  L L++N
Sbjct: 356 YNHIRALGDQSFLGL----PNLKELALDTN 381

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 45.9 bits (109), Expect = 6e-06
 Identities = 32/177 (18%), Positives = 57/177 (32%), Gaps = 9/177 (5%)

Query: 75  NSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQ 134
            +S   LQ L +L +                 + L  L L    F          L NL+
Sbjct: 47  ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLE 106

Query: 135 SLNLGYNSLYVS--KFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASST 192
            L L   +L  +     +   L  L  L L   ++ +         ++     L L  + 
Sbjct: 107 VLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP-ASFFLNMRRFHVLDLTFNK 165

Query: 193 LPSINRPSLSSMNSS--TSLALLDLSSCGLSNSAYHWL----FKISSNLLALDLNSN 243
           + SI    L +      T L L  ++   ++     W        ++++  LDL+ N
Sbjct: 166 VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGN 222

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 43.2 bits (102), Expect = 4e-05
 Identities = 23/114 (20%), Positives = 42/114 (36%), Gaps = 5/114 (4%)

Query: 131 TNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLAS 190
            ++  ++L  NS+        S L  L  L ++                L+SL  L L  
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIR-NNTFRGLSSLIILKLDY 88

Query: 191 STLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHW-LFKISSNLLALDLNSN 243
           +    +   + + +    +L +L L+ C L  +      FK  ++L  L L  N
Sbjct: 89  NQFLQLETGAFNGL---ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 34/137 (24%), Positives = 54/137 (39%), Gaps = 5/137 (3%)

Query: 79  LELQHLNYLDLSVNDFLGNPIPEFI-GFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLN 137
           LE   +   DLS +      + + +   FT L  L L+    +         LT+L  LN
Sbjct: 272 LEASGVKTCDLSKSKI--FALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLN 329

Query: 138 LGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSIN 197
           L  N L         +L+KL  LDL +  +    D  Q    L +L++L L ++ L S+ 
Sbjct: 330 LSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGD--QSFLGLPNLKELALDTNQLKSVP 387

Query: 198 RPSLSSMNSSTSLALLD 214
                 + S   + L  
Sbjct: 388 DGIFDRLTSLQKIWLHT 404

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 32/186 (17%), Positives = 59/186 (31%), Gaps = 25/186 (13%)

Query: 81  LQHLNYLDLSVNDFLGNPIPEFIGFF---TKLRFLDLSLANFSGRIPYQL-GNLTNLQSL 136
           L +L  L L+  +  G  +     FF   T L  L L   N     P     N+     L
Sbjct: 102 LANLEVLTLTQCNLDGAVLSG--NFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVL 159

Query: 137 NLGYNSLYVSKFGWLSHLNK--LTQLDLDFVDLSEASDW------LQVITSLASLRDLYL 188
           +L +N +       L +      T L L  + L + +++              S+  L L
Sbjct: 160 DLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDL 219

Query: 189 ASSTLPSINRPSLSSMNSSTSLALLDLSS-----CGLSNSAYHWLFKIS------SNLLA 237
           + +              + T +  L LS+         ++ +      +      S +  
Sbjct: 220 SGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKT 279

Query: 238 LDLNSN 243
            DL+ +
Sbjct: 280 CDLSKS 285

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 46.4 bits (110), Expect = 3e-06
 Identities = 28/163 (17%), Positives = 54/163 (33%), Gaps = 31/163 (19%)

Query: 81  LQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGY 140
             H+  L +  N+     +P       +LR L++S  N    +P     L  L   +   
Sbjct: 60  PAHITTLVIPDNNL--TSLPALPP---ELRTLEVS-GNQLTSLPVLPPGLLELSIFSNPL 113

Query: 141 NSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPS 200
             L           + L +L +    L+              L++L ++ + L S+    
Sbjct: 114 THLPAL-------PSGLCKLWIFGNQLTSLPV------LPPGLQELSVSDNQLASLP--- 157

Query: 201 LSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
                  + L  L   +  L++     L  + S L  L ++ N
Sbjct: 158 ----ALPSELCKLWAYNNQLTS-----LPMLPSGLQELSVSDN 191

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 35/200 (17%), Positives = 60/200 (30%), Gaps = 52/200 (26%)

Query: 73  NINSSLLELQHLNYLDLSVN------------DFLGNPIPEFIGFFTKLRFLDLSLANFS 120
           ++      L  L+     +                GN +         L+ L +S  N  
Sbjct: 95  SLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVS-DNQL 153

Query: 121 GRIPYQLGNLT-----------------NLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLD 163
             +P     L                   LQ L++  N L  S     S L KL   +  
Sbjct: 154 ASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQL-ASLPTLPSELYKLWAYNNR 212

Query: 164 FVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNS 223
              L             + L++L ++ + L S+           + L  L +S   L++ 
Sbjct: 213 LTSLPA---------LPSGLKELIVSGNRLTSLP-------VLPSELKELMVSGNRLTS- 255

Query: 224 AYHWLFKISSNLLALDLNSN 243
               L  + S LL+L +  N
Sbjct: 256 ----LPMLPSGLLSLSVYRN 271

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 45.2 bits (107), Expect = 7e-06
 Identities = 41/160 (25%), Positives = 60/160 (37%), Gaps = 5/160 (3%)

Query: 86  YLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQ-LGNLTNLQSLNLGYNSLY 144
            LDLS N+             T L  L LS  + +  I  +    + NL+ L+L  N L+
Sbjct: 43  LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH 101

Query: 145 VSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSM 204
                  S L  L  L L    +            +A L+ LYL+ + +       +   
Sbjct: 102 TLDEFLFSDLQALEVLLLYNNHIVVVDR--NAFEDMAQLQKLYLSQNQISRFPVELIKDG 159

Query: 205 NSSTSLALLDLSSCGLSNSAYHWLFKISS-NLLALDLNSN 243
           N    L LLDLSS  L       L K+ +     L L++N
Sbjct: 160 NKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 44.7 bits (106), Expect = 9e-06
 Identities = 38/163 (23%), Positives = 58/163 (35%), Gaps = 11/163 (6%)

Query: 81  LQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGY 140
              L  L+L   +     +         L  LDLS  N    +P     L  L  L++ +
Sbjct: 54  YTRLTQLNLDRAEL--TKLQVDGTL-PVLGTLDLS-HNQLQSLPLLGQTLPALTVLDVSF 109

Query: 141 NSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPS 200
           N L     G L  L +L +L L   +L        ++T    L  L LA++ L  +    
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPP--GLLTPTPKLEKLSLANNNLTELPAGL 167

Query: 201 LSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
           L+ +    +L  L L    L  +     F  S  L    L+ N
Sbjct: 168 LNGL---ENLDTLLLQENSLY-TIPKGFFG-SHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 9/113 (7%)

Query: 131 TNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLAS 190
            +   L+L  N LY      L    +LTQL+LD  +L++    LQV  +L  L  L L+ 
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK----LQVDGTLPVLGTLDLSH 86

Query: 191 STLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
           + L S+  P L    +  +L +LD+S   L+ S      +    L  L L  N
Sbjct: 87  NQLQSL--PLLGQ--TLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGN 134

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 44.6 bits (106), Expect = 9e-06
 Identities = 37/171 (21%), Positives = 68/171 (39%), Gaps = 26/171 (15%)

Query: 76  SSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLS---LANFSGRIPYQLGNLTN 132
            S  EL  +   +   ++         + FFT L+ L LS   +++ S      L +LT 
Sbjct: 35  VSQKELSGVQNFNGDNSNIQ---SLAGMQFFTNLKELHLSHNQISDLSP-----LKDLTK 86

Query: 133 LQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASST 192
           L+ L++  N L       +     L++L LD  +L +       +  L +L  L + ++ 
Sbjct: 87  LEELSVNRNRL--KNLNGIPSAC-LSRLFLDNNELRD----TDSLIHLKNLEILSIRNNK 139

Query: 193 LPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
           L SI    L  +   + L +LDL    ++N+           +  +DL   
Sbjct: 140 LKSI--VMLGFL---SKLEVLDLHGNEITNTGG---LTRLKKVNWIDLTGQ 182

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 17/118 (14%)

Query: 127 LGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDL 186
              L N    NLG  S  V+       L+ +   + D  ++      L  +    +L++L
Sbjct: 15  DPGLANAVKQNLGKQS--VTDLVSQKELSGVQNFNGDNSNIQS----LAGMQFFTNLKEL 68

Query: 187 YLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISS-NLLALDLNSN 243
           +L+ + +  +     S +   T L  L ++   L N     L  I S  L  L L++N
Sbjct: 69  HLSHNQISDL-----SPLKDLTKLEELSVNRNRLKN-----LNGIPSACLSRLFLDNN 116

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 9/142 (6%)

Query: 106 FTKLRFLDLSLANFSGRIPYQL-GNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDF 164
           F +L+ LDLS       I      +L++L +L L  N +     G  S L+ L +L    
Sbjct: 51  FPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109

Query: 165 VDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSN-- 222
            +L+   +    I  L +L++L +A + + S   P   S  + T+L  LDLSS  + +  
Sbjct: 110 TNLASLEN--FPIGHLKTLKELNVAHNLIQSFKLPEYFS--NLTNLEHLDLSSNKIQSIY 165

Query: 223 -SAYHWLFKISSNLLALDLNSN 243
            +    L ++    L+LDL+ N
Sbjct: 166 CTDLRVLHQMPLLNLSLDLSLN 187

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 42.6 bits (101), Expect = 6e-05
 Identities = 33/180 (18%), Positives = 62/180 (34%), Gaps = 20/180 (11%)

Query: 82  QHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGR----IPYQLGNLTNLQSLN 137
             +  LD+   +       E +    + + + L     +      I   L     L  LN
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 138 LGYNSL------YVSKFGWLSHLN-KLTQLDLDFVDLSE--ASDWLQVITSLASLRDLYL 188
           L  N L       V +   L   + K+ +L L    L+          + +L +L++L+L
Sbjct: 63  LRSNELGDVGVHCVLQG--LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 120

Query: 189 ASSTLPSINRPSLSSM--NSSTSLALLDLSSCGLSNSAYHWLF---KISSNLLALDLNSN 243
           + + L       L     +    L  L L  C LS ++   L    +   +   L +++N
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 180

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 32/188 (17%), Positives = 54/188 (28%), Gaps = 29/188 (15%)

Query: 81  LQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQ-LGNLTNLQSLNLG 139
              L  +++S ND L     +      KL  + +  AN    I  +   NL NLQ L + 
Sbjct: 53  FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLIS 112

Query: 140 YNSLYVSKFGWLSHLNKLTQLDLD------------FVDLSEASDWLQ------------ 175
              +         H  +   LD+             FV LS  S  L             
Sbjct: 113 NTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNS 172

Query: 176 VITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNL 235
                         ++ L  +           +   +LD+S   + +   + L  +   L
Sbjct: 173 AFNGTQLDELNLSDNNNLEELPNDVFHGA---SGPVILDISRTRIHSLPSYGLENL-KKL 228

Query: 236 LALDLNSN 243
            A    + 
Sbjct: 229 RARSTYNL 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 24/173 (13%), Positives = 58/173 (33%), Gaps = 21/173 (12%)

Query: 81  LQHLNYLDLSVNDFLGNPIPE--FIGFFTKLRFLDLSLANFSGRIPYQ-LGNLTNLQSLN 137
           L +++ + +S++  L   +    F    +K+  +++        I    L  L  L+ L 
Sbjct: 54  LPNISRIYVSIDVTLQQ-LESHSFYN-LSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111

Query: 138 LGYNSL-YVSKFGWLSHLNKLTQLDL-DFVDLSEASDWLQVITSLAS-LRDLYLASSTLP 194
           +    L        +   +    L++ D   ++           L +    L L ++   
Sbjct: 112 IFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPV--NAFQGLCNETLTLKLYNNGFT 169

Query: 195 SINRPSLSSMNSSTSLALLDLSS----CGLSNSAYHWLFKISSNLLALDLNSN 243
           S+   +     + T L  + L+       +   A+     + S    LD++  
Sbjct: 170 SVQGYAF----NGTKLDAVYLNKNKYLTVIDKDAFG---GVYSGPSLLDVSQT 215

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 25/129 (19%), Positives = 49/129 (37%), Gaps = 4/129 (3%)

Query: 87  LDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQ-LGNLTNLQSLNLGYNSLYV 145
           L L+ N+F             +LR ++ S  N    I        + +  + L  N L  
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFS-NNKITDIEEGAFEGASGVNEILLTSNRLEN 95

Query: 146 SKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMN 205
            +      L  L  L L    ++   +       L+S+R L L  + + ++   +  +++
Sbjct: 96  VQHKMFKGLESLKTLMLRSNRITCVGN--DSFIGLSSVRLLSLYDNQITTVAPGAFDTLH 153

Query: 206 SSTSLALLD 214
           S ++L LL 
Sbjct: 154 SLSTLNLLA 162

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 39.5 bits (92), Expect = 5e-04
 Identities = 47/215 (21%), Positives = 83/215 (38%), Gaps = 11/215 (5%)

Query: 36  DCCKWSGVQCSNRTGHVIMLN--LKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVND 93
           D   W  +  + +  H  +    L   V      R       +       + ++DLS + 
Sbjct: 45  DESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSV 104

Query: 94  FLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGW--- 150
              + +   +   +KL+ L L     S  I   L   +NL  LNL   S   S+F     
Sbjct: 105 IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS-GFSEFALQTL 163

Query: 151 LSHLNKLTQLDLDF-VDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSS-T 208
           LS  ++L +L+L +  D +E    + V     ++  L L+     ++ +  LS++     
Sbjct: 164 LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR-KNLQKSDLSTLVRRCP 222

Query: 209 SLALLDLSSC-GLSNSAYHWLFKISSNLLALDLNS 242
           +L  LDLS    L N  +   F+  + L  L L+ 
Sbjct: 223 NLVHLDLSDSVMLKNDCFQEFFQ-LNYLQHLSLSR 256

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 39.7 bits (92), Expect = 5e-04
 Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 2/99 (2%)

Query: 65  CPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIP 124
           C       +    L   ++L  L +     L +     +    +LR L +  +      P
Sbjct: 15  CTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP 73

Query: 125 YQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLD 163
                   L  LNL +N+L    +  +  L+ L +L L 
Sbjct: 74  DAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLS 111

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 39.2 bits (91), Expect = 8e-04
 Identities = 25/180 (13%), Positives = 54/180 (30%), Gaps = 35/180 (19%)

Query: 81  LQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLT--------- 131
              +  L+++ N      +PE       L +LD      S  +P    +L          
Sbjct: 79  PPQITVLEITQNAL--ISLPELPA---SLEYLDACDNRLS-TLPELPASLKHLDVDNNQL 132

Query: 132 --------NLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASL 183
                    L+ +N   N L +           L  L +    L+   +  +      SL
Sbjct: 133 TMLPELPALLEYINADNNQLTM----LPELPTSLEVLSVRNNQLTFLPELPE------SL 182

Query: 184 RDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
             L ++++ L S+    + + +S  +          ++      +  +      + L  N
Sbjct: 183 EALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSL-DPTCTIILEDN 240

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	243
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.97
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.97
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.97
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.95
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.94
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.92
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.91
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.91
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.91
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.91
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.89
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.88
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.88
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.88
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.87
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.87
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.87
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.87
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.87
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.87
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.87
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.87
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.87
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.87
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.87
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.86
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.86
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.86
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.86
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.86
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.85
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.85
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.85
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.85
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.85
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.85
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.85
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.85
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.85
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.85
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.84
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.84
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.84
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.84
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.84
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.84
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.84
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.83
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.82
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.82
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.82
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.82
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.82
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.82
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.82
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.81
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.81
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.81
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.81
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.81
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.8
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.8
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.8
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.8
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.8
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.8
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.8
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.8
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.8
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.8
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.79
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.79
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.79
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.79
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.79
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.78
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.78
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.78
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.78
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.78
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.78
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.78
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.77
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.77
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.77
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.76
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.76
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.75
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.75
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.75
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.74
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.74
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.74
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.73
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.73
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.72
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.7
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.7
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.7
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.69
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.69
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.69
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.69
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.68
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.67
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.66
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.66
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.66
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.66
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.66
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.66
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.65
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.65
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.65
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.64
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.64
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.64
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.63
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.6
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.58
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.56
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.55
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.55
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.54
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.49
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.48
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.47
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.46
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.46
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.44
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.38
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.37
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.34
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.32
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.32
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.28
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.25
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.21
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.01
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.96
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.9
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.76
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.76
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.74
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.51
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.49
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.34
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.28
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.93
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.71
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.56
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.55
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.53
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.49
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.43
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.38
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.62
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.45

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1.2e-34  Score=238.22  Aligned_cols=221  Identities=31%  Similarity=0.414  Sum_probs=171.7

Q ss_pred             CCCHHHHHHHHHhhhcccCCCCCCCCCCCCCCCCCCcc--cceEEecCCC--CceEEEecCCCCCCCCCCCCccc--ccc
Q 044082            2 KCIEKERQALLMFKQGLVDDCGYLSSWGSDEGRKDCCK--WSGVQCSNRT--GHVIMLNLKYKVDPVCPNRPLRG--NIN   75 (243)
Q Consensus         2 ~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~--~~~~~c~~~~--~~l~~L~l~~~~~~~~~~~~~~~--~~~   75 (243)
                      .|.++|++||++||+++++|. .+.+|.   .+.+||.  |.||.|....  ++|++|++++        +.+.+  .+|
T Consensus         2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~---~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~--------~~l~~~~~~~   69 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGNPT-TLSSWL---PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSG--------LNLPKPYPIP   69 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGTTCC---TTSCTTTTCSTTEEECCSSSCCCEEEEEEEC--------CCCSSCEECC
T ss_pred             CCCHHHHHHHHHHHHhcCCcc-cccCCC---CCCCCCcCCCcceEeCCCCCCceEEEEECCC--------CCccCCcccC
Confidence            589999999999999998876 678998   5778998  9999997644  7999999999        47787  788


Q ss_pred             hhhccCCCCcEEEccC-CCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCC
Q 044082           76 SSLLELQHLNYLDLSV-NDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHL  154 (243)
Q Consensus        76 ~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l  154 (243)
                      ..++++++|++|++++ |.+.+. +|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++..|..+..+
T Consensus        70 ~~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  148 (313)
T 1ogq_A           70 SSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL  148 (313)
T ss_dssp             GGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC
T ss_pred             hhHhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcC
Confidence            8888888888888884 777776 78888888888888888888887788888888888888888888887777778888


Q ss_pred             CCCCEEEcCCccccCC-cchHHHhhccc-cccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhh
Q 044082          155 NKLTQLDLDFVDLSEA-SDWLQVITSLA-SLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKIS  232 (243)
Q Consensus       155 ~~L~~L~l~~n~l~~~-~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~  232 (243)
                      ++|++|++++|.+.+. |.   .+..++ +|++|++++|.+++..+  ..+..+ + |+.|++++|.+++..|..+..++
T Consensus       149 ~~L~~L~L~~N~l~~~~p~---~l~~l~~~L~~L~L~~N~l~~~~~--~~~~~l-~-L~~L~Ls~N~l~~~~~~~~~~l~  221 (313)
T 1ogq_A          149 PNLVGITFDGNRISGAIPD---SYGSFSKLFTSMTISRNRLTGKIP--PTFANL-N-LAFVDLSRNMLEGDASVLFGSDK  221 (313)
T ss_dssp             TTCCEEECCSSCCEEECCG---GGGCCCTTCCEEECCSSEEEEECC--GGGGGC-C-CSEEECCSSEEEECCGGGCCTTS
T ss_pred             CCCCeEECcCCcccCcCCH---HHhhhhhcCcEEECcCCeeeccCC--hHHhCC-c-ccEEECcCCcccCcCCHHHhcCC
Confidence            8888888888888743 43   666666 77777777777776555  444444 4 66666666666655565566665


Q ss_pred             ccCceeeCCCC
Q 044082          233 SNLLALDLNSN  243 (243)
Q Consensus       233 ~~L~~L~l~~N  243 (243)
                      + |++|++++|
T Consensus       222 ~-L~~L~L~~N  231 (313)
T 1ogq_A          222 N-TQKIHLAKN  231 (313)
T ss_dssp             C-CSEEECCSS
T ss_pred             C-CCEEECCCC
Confidence            5 666666554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.97  E-value=9.2e-31  Score=238.56  Aligned_cols=217  Identities=25%  Similarity=0.321  Sum_probs=167.2

Q ss_pred             CCHHHHHHHHHhhhcccCCCCCCCCCCCCCCCCCCcccceEEecCCCCceEEEecCCCCCCCCCCCCcccc---cc----
Q 044082            3 CIEKERQALLMFKQGLVDDCGYLSSWGSDEGRKDCCKWSGVQCSNRTGHVIMLNLKYKVDPVCPNRPLRGN---IN----   75 (243)
Q Consensus         3 ~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~c~~~~~~l~~L~l~~~~~~~~~~~~~~~~---~~----   75 (243)
                      +.++|++||++||+++.||. .+++|.   .+.+||.|.||.|.  .++|+.|||+++        .+.|.   ++    
T Consensus         9 ~~~~~~~all~~k~~~~~~~-~l~~W~---~~~~~C~w~gv~C~--~~~v~~L~L~~~--------~l~g~~~~l~~~l~   74 (768)
T 3rgz_A            9 SLYREIHQLISFKDVLPDKN-LLPDWS---SNKNPCTFDGVTCR--DDKVTSIDLSSK--------PLNVGFSAVSSSLL   74 (768)
T ss_dssp             CHHHHHHHHHHHHTTCSCTT-SSTTCC---TTSCGGGSTTEEEE--TTEEEEEECTTS--------CCCEEHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHhhCCCcc-cccCCC---CCCCCcCCcceEEC--CCcEEEEECCCC--------CcCCccCccChhHh
Confidence            35689999999999998888 889998   57899999999997  589999999994        55554   33    


Q ss_pred             -------------------hhhccCCCCcEEEccCCCCCCCCcch--hhcCCCCCcEEecCCccccccCCcCC-CCCCCC
Q 044082           76 -------------------SSLLELQHLNYLDLSVNDFLGNPIPE--FIGFFTKLRFLDLSLANFSGRIPYQL-GNLTNL  133 (243)
Q Consensus        76 -------------------~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L  133 (243)
                                         ..++++++|++|++++|.+.+. +|.  .++.+++|++|++++|.+.+..|..+ ..+++|
T Consensus        75 ~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L  153 (768)
T 3rgz_A           75 SLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGP-VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSL  153 (768)
T ss_dssp             TCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEE-GGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTC
T ss_pred             ccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCc-CCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCC
Confidence                               4566677777777777777664 565  67777777777777777776666554 667777


Q ss_pred             cEEEccCCccccCCccc---cCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCC
Q 044082          134 QSLNLGYNSLYVSKFGW---LSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSL  210 (243)
Q Consensus       134 ~~L~l~~n~l~~~~~~~---l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L  210 (243)
                      ++|++++|.+++..+..   +..+++|++|++++|.+.+...    +..+++|++|++++|.+.+..+  . +..+ ++|
T Consensus       154 ~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~l~~L~~L~Ls~n~l~~~~~--~-l~~l-~~L  225 (768)
T 3rgz_A          154 EVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD----VSRCVNLEFLDVSSNNFSTGIP--F-LGDC-SAL  225 (768)
T ss_dssp             SEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB----CTTCTTCCEEECCSSCCCSCCC--B-CTTC-CSC
T ss_pred             CEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC----cccCCcCCEEECcCCcCCCCCc--c-cccC-CCC
Confidence            77777777777665554   5667777777777777766532    2677888888888888887666  3 6666 889


Q ss_pred             cEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082          211 ALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       211 ~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N  243 (243)
                      ++|++++|.+++.+|..+..+++ |++|++++|
T Consensus       226 ~~L~Ls~n~l~~~~~~~l~~l~~-L~~L~Ls~n  257 (768)
T 3rgz_A          226 QHLDISGNKLSGDFSRAISTCTE-LKLLNISSN  257 (768)
T ss_dssp             CEEECCSSCCCSCHHHHTTTCSS-CCEEECCSS
T ss_pred             CEEECcCCcCCCcccHHHhcCCC-CCEEECCCC
Confidence            99999999998888888888888 888888876

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.97  E-value=2.4e-31  Score=219.87  Aligned_cols=230  Identities=20%  Similarity=0.218  Sum_probs=158.6

Q ss_pred             CCHHHHHHHHHhhhcc-cCCCCCCCCCCCCC-CCCCCcccceEEec--------CCCCceEEEecCCCCC----------
Q 044082            3 CIEKERQALLMFKQGL-VDDCGYLSSWGSDE-GRKDCCKWSGVQCS--------NRTGHVIMLNLKYKVD----------   62 (243)
Q Consensus         3 ~~~~~~~~l~~~~~~~-~~~~~~~~~w~~~~-~~~~~~~~~~~~c~--------~~~~~l~~L~l~~~~~----------   62 (243)
                      ++.+|++||++|++++ .++.++...|.... ....+|.|.|+.|.        ....+|+.|+|+++.+          
T Consensus        24 ~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~~lp~~l~~l  103 (328)
T 4fcg_A           24 ALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRL  103 (328)
T ss_dssp             CCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCSSCCSCGGGG
T ss_pred             cCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCchhcChhhhhC
Confidence            3556899999999998 68877778894111 56789999999994        2346889999998654          


Q ss_pred             -----CCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCC--------
Q 044082           63 -----PVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN--------  129 (243)
Q Consensus        63 -----~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~--------  129 (243)
                           +++.+|.+. .+|..++++++|++|++++|.++.  +|..+..+++|++|++++|.+.+.+|..+..        
T Consensus       104 ~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~--lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~  180 (328)
T 4fcg_A          104 SHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRA--LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQ  180 (328)
T ss_dssp             TTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCC--CCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEE
T ss_pred             CCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCcccc--CcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhc
Confidence                 333334444 555556666666666666666652  5666666666666666666555555555443        


Q ss_pred             -CCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCC
Q 044082          130 -LTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSST  208 (243)
Q Consensus       130 -l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~  208 (243)
                       +++|++|++++|.++ .+|..+..+++|++|++++|.+.+.+.   .+..+++|++|++++|.+.+..+  ..+..+ +
T Consensus       181 ~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~---~l~~l~~L~~L~Ls~n~~~~~~p--~~~~~l-~  253 (328)
T 4fcg_A          181 GLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGP---AIHHLPKLEELDLRGCTALRNYP--PIFGGR-A  253 (328)
T ss_dssp             ESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCG---GGGGCTTCCEEECTTCTTCCBCC--CCTTCC-C
T ss_pred             cCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCch---hhccCCCCCEEECcCCcchhhhH--HHhcCC-C
Confidence             666666666666666 456666777777777777777776654   56677777777777777776666  455555 7


Q ss_pred             CCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082          209 SLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       209 ~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N  243 (243)
                      +|+.|++++|.+.+.+|..+..+++ |++|++++|
T Consensus       254 ~L~~L~L~~n~~~~~~p~~~~~l~~-L~~L~L~~n  287 (328)
T 4fcg_A          254 PLKRLILKDCSNLLTLPLDIHRLTQ-LEKLDLRGC  287 (328)
T ss_dssp             CCCEEECTTCTTCCBCCTTGGGCTT-CCEEECTTC
T ss_pred             CCCEEECCCCCchhhcchhhhcCCC-CCEEeCCCC
Confidence            7788888777777777777777777 888887765

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.97  E-value=2.8e-30  Score=230.83  Aligned_cols=217  Identities=19%  Similarity=0.192  Sum_probs=187.7

Q ss_pred             HHHHHHHHHhhhccc-CCCCCCC-------CCCCCCCCCCCccc---ceEEecCCCCceEEEecCCCCCCCCCCCCcccc
Q 044082            5 EKERQALLMFKQGLV-DDCGYLS-------SWGSDEGRKDCCKW---SGVQCSNRTGHVIMLNLKYKVDPVCPNRPLRGN   73 (243)
Q Consensus         5 ~~~~~~l~~~~~~~~-~~~~~~~-------~w~~~~~~~~~~~~---~~~~c~~~~~~l~~L~l~~~~~~~~~~~~~~~~   73 (243)
                      .+|++||.+++++++ ..+.+..       +|.   .+.++|.|   .||.|... ++|+.|+|++        +.+.|.
T Consensus        29 ~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~---~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~--------~~l~g~   96 (636)
T 4eco_A           29 IKDYLALKEIWDALNGKNWSQQGFGTQPGANWN---FNKELDMWGAQPGVSLNSN-GRVTGLSLEG--------FGASGR   96 (636)
T ss_dssp             HHHHHHHHHHHHHTTGGGCCCCC------CCCC---CSSCGGGTTCCTTEEECTT-CCEEEEECTT--------SCCEEE
T ss_pred             HHHHHHHHHHHHHcCCCCcccCCcCCccCCCCC---CCCCcccccCCCCeEEcCC-CCEEEEEecC--------cccCCc
Confidence            369999999999994 4444333       687   57899999   99999754 8999999999        599999


Q ss_pred             cchhhccCCCCcEEEccCCCC-----------------------------------------------------------
Q 044082           74 INSSLLELQHLNYLDLSVNDF-----------------------------------------------------------   94 (243)
Q Consensus        74 ~~~~~~~l~~L~~L~l~~n~l-----------------------------------------------------------   94 (243)
                      +|+.++++++|++|++++|.+                                                           
T Consensus        97 lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~  176 (636)
T 4eco_A           97 VPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIK  176 (636)
T ss_dssp             ECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCC
T ss_pred             CChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccc
Confidence            999999999999999999854                                                           


Q ss_pred             -------------------CCCCcchhhcCCCCCcEEecCCcccccc-----------------CCcCCC--CCCCCcEE
Q 044082           95 -------------------LGNPIPEFIGFFTKLRFLDLSLANFSGR-----------------IPYQLG--NLTNLQSL  136 (243)
Q Consensus        95 -------------------~~~~~~~~~~~l~~L~~L~l~~~~~~~~-----------------~~~~l~--~l~~L~~L  136 (243)
                                         ++  +|..++.+++|++|++++|.+++.                 +|..++  .+++|++|
T Consensus       177 ~~~~~~l~~l~l~~~~n~l~~--ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L  254 (636)
T 4eco_A          177 KSSRITLKDTQIGQLSNNITF--VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDV  254 (636)
T ss_dssp             CCCCCCCCTTTTTCCSCEEEE--ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEE
T ss_pred             cccccchhhhhhccccCCCcc--CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEE
Confidence                               12  677899999999999999999975                 899998  99999999


Q ss_pred             EccCCccccCCccccCCCCCCCEEEcCCcc-ccC-CcchHHHhhcc------ccccccccccccCCCCCCCCc--ccccC
Q 044082          137 NLGYNSLYVSKFGWLSHLNKLTQLDLDFVD-LSE-ASDWLQVITSL------ASLRDLYLASSTLPSINRPSL--SSMNS  206 (243)
Q Consensus       137 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~~~~~~~l------~~L~~L~l~~n~~~~~~~~~~--~~~~~  206 (243)
                      ++++|.+.+.+|..++.+++|++|++++|. +++ .  ++..+..+      ++|++|++++|.++ ..|  .  .+..+
T Consensus       255 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~--lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip--~~~~l~~l  329 (636)
T 4eco_A          255 EVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQ--LKDDWQALADAPVGEKIQIIYIGYNNLK-TFP--VETSLQKM  329 (636)
T ss_dssp             EEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHH--HHHHHHHHHHSGGGGTCCEEECCSSCCS-SCC--CHHHHTTC
T ss_pred             EecCCcCCccChHHHhcCCCCCEEECcCCCCCcccc--chHHHHhhhccccCCCCCEEECCCCcCC-ccC--chhhhccC
Confidence            999999999999999999999999999998 876 3  23366665      89999999999998 445  4  56777


Q ss_pred             CCCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082          207 STSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       207 ~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N  243 (243)
                       ++|+.|++++|.++|.+| .+..+++ |++|++++|
T Consensus       330 -~~L~~L~L~~N~l~g~ip-~~~~l~~-L~~L~L~~N  363 (636)
T 4eco_A          330 -KKLGMLECLYNQLEGKLP-AFGSEIK-LASLNLAYN  363 (636)
T ss_dssp             -TTCCEEECCSCCCEEECC-CCEEEEE-ESEEECCSS
T ss_pred             -CCCCEEeCcCCcCccchh-hhCCCCC-CCEEECCCC
Confidence             999999999999998888 8888888 999999886

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.95  E-value=2.1e-28  Score=223.94  Aligned_cols=216  Identities=22%  Similarity=0.228  Sum_probs=178.3

Q ss_pred             HHHHHHHHHhhhcccCCCCCCCCCCCCC--CCCCC--ccc------------ceEEecCCCCceEEEecCCCCCCCCCCC
Q 044082            5 EKERQALLMFKQGLVDDCGYLSSWGSDE--GRKDC--CKW------------SGVQCSNRTGHVIMLNLKYKVDPVCPNR   68 (243)
Q Consensus         5 ~~~~~~l~~~~~~~~~~~~~~~~w~~~~--~~~~~--~~~------------~~~~c~~~~~~l~~L~l~~~~~~~~~~~   68 (243)
                      .+|++||++|++++++|     +|....  ...++  |.|            .||.|.. .++|+.|+|++        +
T Consensus       268 ~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~--------~  333 (876)
T 4ecn_A          268 IKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAG--------F  333 (876)
T ss_dssp             HHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTT--------T
T ss_pred             hHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECcc--------C
Confidence            47999999999999776     686311  01244  999            9999975 68999999999        5


Q ss_pred             CcccccchhhccCCCCcEEEc-cCCCCCCC--------------------------------------------------
Q 044082           69 PLRGNINSSLLELQHLNYLDL-SVNDFLGN--------------------------------------------------   97 (243)
Q Consensus        69 ~~~~~~~~~~~~l~~L~~L~l-~~n~l~~~--------------------------------------------------   97 (243)
                      ++.|.+|+.++++++|++|++ ++|.+.+.                                                  
T Consensus       334 ~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~  413 (876)
T 4ecn_A          334 GAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPE  413 (876)
T ss_dssp             CCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTT
T ss_pred             CCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcc
Confidence            999999999999999999999 66643111                                                  


Q ss_pred             -------------------------CcchhhcCCCCCcEEecCCccccc-----------------cCCcCCC--CCCCC
Q 044082           98 -------------------------PIPEFIGFFTKLRFLDLSLANFSG-----------------RIPYQLG--NLTNL  133 (243)
Q Consensus        98 -------------------------~~~~~~~~l~~L~~L~l~~~~~~~-----------------~~~~~l~--~l~~L  133 (243)
                                               .+|..++.+++|++|++++|.+++                 .+|..++  .+++|
T Consensus       414 ~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L  493 (876)
T 4ecn_A          414 MKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDL  493 (876)
T ss_dssp             SCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTC
T ss_pred             ccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCC
Confidence                                     067789999999999999999997                 3888887  99999


Q ss_pred             cEEEccCCccccCCccccCCCCCCCEEEcCCcc-ccC-CcchHHHhhccc-------cccccccccccCCCCCCCCc--c
Q 044082          134 QSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVD-LSE-ASDWLQVITSLA-------SLRDLYLASSTLPSINRPSL--S  202 (243)
Q Consensus       134 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~~~~~~~l~-------~L~~L~l~~n~~~~~~~~~~--~  202 (243)
                      ++|++++|.+.+.+|..++.+++|++|++++|. +++ .  +|..+..+.       +|++|++++|.++ ..|  .  .
T Consensus       494 ~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~--iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip--~~~~  568 (876)
T 4ecn_A          494 TDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQ--LKADWTRLADDEDTGPKIQIFYMGYNNLE-EFP--ASAS  568 (876)
T ss_dssp             CEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHH--HHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCC--CHHH
T ss_pred             CEEECcCCCCCccChHHHhCCCCCCEEECcCCCCccccc--chHHHHhhhhcccccCCccEEEeeCCcCC-ccC--Chhh
Confidence            999999999999999999999999999999998 876 3  223555555       9999999999998 444  4  5


Q ss_pred             cccCCCCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082          203 SMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       203 ~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N  243 (243)
                      +..+ ++|+.|++++|.++ .+| .++.+++ |++|++++|
T Consensus       569 l~~L-~~L~~L~Ls~N~l~-~lp-~~~~L~~-L~~L~Ls~N  605 (876)
T 4ecn_A          569 LQKM-VKLGLLDCVHNKVR-HLE-AFGTNVK-LTDLKLDYN  605 (876)
T ss_dssp             HTTC-TTCCEEECTTSCCC-BCC-CCCTTSE-ESEEECCSS
T ss_pred             hhcC-CCCCEEECCCCCcc-cch-hhcCCCc-ceEEECcCC
Confidence            6666 89999999999998 777 7888888 999988876

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.94  E-value=7.3e-26  Score=181.99  Aligned_cols=177  Identities=23%  Similarity=0.192  Sum_probs=149.7

Q ss_pred             eEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCC
Q 044082           52 VIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLT  131 (243)
Q Consensus        52 l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~  131 (243)
                      ++.|++++        |.+.+..+..+.++++|++|++++|.++.. .+..+..+++|++|++++|.+.+..+..+..++
T Consensus        39 l~~L~l~~--------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  109 (270)
T 2o6q_A           39 TKKLDLQS--------NKLSSLPSKAFHRLTKLRLLYLNDNKLQTL-PAGIFKELKNLETLWVTDNKLQALPIGVFDQLV  109 (270)
T ss_dssp             CSEEECCS--------SCCSCCCTTSSSSCTTCCEEECCSSCCSCC-CTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCS
T ss_pred             CCEEECcC--------CCCCeeCHHHhcCCCCCCEEECCCCccCee-ChhhhcCCCCCCEEECCCCcCCcCCHhHccccc
Confidence            45555555        577766666899999999999999999875 455668899999999999999966666788999


Q ss_pred             CCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCc
Q 044082          132 NLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLA  211 (243)
Q Consensus       132 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~  211 (243)
                      +|++|++++|.++...+..+..+++|++|++++|.+...+.  ..+..+++|++|++++|.++.+.+  ..+..+ ++|+
T Consensus       110 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l-~~L~  184 (270)
T 2o6q_A          110 NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK--GVFDKLTSLKELRLYNNQLKRVPE--GAFDKL-TELK  184 (270)
T ss_dssp             SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCSCCCT--TTTTTC-TTCC
T ss_pred             CCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCH--hHccCCcccceeEecCCcCcEeCh--hHhccC-CCcC
Confidence            99999999999998888888999999999999999998854  357889999999999999998876  556666 9999


Q ss_pred             EEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082          212 LLDLSSCGLSNSAYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       212 ~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N  243 (243)
                      .|++++|.+++..+..+..+++ |+.|++++|
T Consensus       185 ~L~L~~N~l~~~~~~~~~~l~~-L~~L~l~~N  215 (270)
T 2o6q_A          185 TLKLDNNQLKRVPEGAFDSLEK-LKMLQLQEN  215 (270)
T ss_dssp             EEECCSSCCSCCCTTTTTTCTT-CCEEECCSS
T ss_pred             EEECCCCcCCcCCHHHhccccC-CCEEEecCC
Confidence            9999999999655556788888 999999987

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.92  E-value=3.1e-24  Score=170.64  Aligned_cols=148  Identities=22%  Similarity=0.225  Sum_probs=71.3

Q ss_pred             CcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCc
Q 044082           69 PLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKF  148 (243)
Q Consensus        69 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  148 (243)
                      .+.+..+..+.++++|++|++++|.++.. .+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++...+
T Consensus        46 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  124 (251)
T 3m19_A           46 GLATLSDATFRGLTKLTWLNLDYNQLQTL-SAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS  124 (251)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             CcCccCHhHhcCcccCCEEECCCCcCCcc-CHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcCh
Confidence            44444444455555555555555555443 34444455555555555555553333344455555555555555544434


Q ss_pred             cccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCcccc
Q 044082          149 GWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSN  222 (243)
Q Consensus       149 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~  222 (243)
                      ..+..+++|++|++++|.+...+.  ..+..+++|++|++++|.+++..+  ..+..+ ++|+.|++++|.++.
T Consensus       125 ~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l-~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          125 GVFDRLTKLKELRLNTNQLQSIPA--GAFDKLTNLQTLSLSTNQLQSVPH--GAFDRL-GKLQTITLFGNQFDC  193 (251)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCSCCCT--TTTTTC-TTCCEEECCSCCBCT
T ss_pred             hHhccCCcccEEECcCCcCCccCH--HHcCcCcCCCEEECCCCcCCccCH--HHHhCC-CCCCEEEeeCCceeC
Confidence            444445555555555555544422  134444555555555555554443  233333 455555555555543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.91  E-value=7.2e-25  Score=179.85  Aligned_cols=181  Identities=21%  Similarity=0.234  Sum_probs=119.9

Q ss_pred             CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCC
Q 044082           50 GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN  129 (243)
Q Consensus        50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~  129 (243)
                      .+++.|+++++       |.+.+.+|..++++++|++|++++|.+++. +|..+..+++|++|++++|.+.+..|..+..
T Consensus        76 ~~L~~L~L~~~-------n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  147 (313)
T 1ogq_A           76 PYLNFLYIGGI-------NNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLVTLDFSYNALSGTLPPSISS  147 (313)
T ss_dssp             TTCSEEEEEEE-------TTEESCCCGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCCEEECCSSEEESCCCGGGGG
T ss_pred             CCCCeeeCCCC-------CcccccCChhHhcCCCCCEEECcCCeeCCc-CCHHHhCCCCCCEEeCCCCccCCcCChHHhc
Confidence            57888888842       366666677777777777777777776654 6666667777777777777766666666666


Q ss_pred             CCCCcEEEccCCccccCCccccCCCC-CCCEEEcCCccccCC-cc--------------------hHHHhhccccccccc
Q 044082          130 LTNLQSLNLGYNSLYVSKFGWLSHLN-KLTQLDLDFVDLSEA-SD--------------------WLQVITSLASLRDLY  187 (243)
Q Consensus       130 l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~-~~--------------------~~~~~~~l~~L~~L~  187 (243)
                      +++|++|++++|.+++..|..+..+. +|++|++++|.+.+. +.                    .+..+..+++|++|+
T Consensus       148 l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  227 (313)
T 1ogq_A          148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIH  227 (313)
T ss_dssp             CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEE
T ss_pred             CCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEE
Confidence            66667777766666655666566555 566666666655422 21                    122455556666666


Q ss_pred             cccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082          188 LASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       188 l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N  243 (243)
                      +++|.+++..+   .+... ++|++|++++|.+++.+|.++..+++ |++|++++|
T Consensus       228 L~~N~l~~~~~---~~~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~-L~~L~Ls~N  278 (313)
T 1ogq_A          228 LAKNSLAFDLG---KVGLS-KNLNGLDLRNNRIYGTLPQGLTQLKF-LHSLNVSFN  278 (313)
T ss_dssp             CCSSEECCBGG---GCCCC-TTCCEEECCSSCCEECCCGGGGGCTT-CCEEECCSS
T ss_pred             CCCCceeeecC---ccccc-CCCCEEECcCCcccCcCChHHhcCcC-CCEEECcCC
Confidence            66666655443   24444 77888888888888778888888887 888888776

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.91  E-value=1.1e-23  Score=170.35  Aligned_cols=169  Identities=25%  Similarity=0.185  Sum_probs=126.3

Q ss_pred             CCcccccchhhccCCCCcEEEccCCC-CCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccC
Q 044082           68 RPLRGNINSSLLELQHLNYLDLSVND-FLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVS  146 (243)
Q Consensus        68 ~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~  146 (243)
                      |.+.+..+..+.++++|++|++++|. +... .+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++..
T Consensus        66 n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  144 (285)
T 1ozn_A           66 NVLARIDAAAFTGLALLEQLDLSDNAQLRSV-DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL  144 (285)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSCTTCCCC-CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             CccceeCHhhcCCccCCCEEeCCCCCCcccc-CHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccccc
Confidence            46666566677777778888887776 5553 466777778888888888877766666677778888888888877766


Q ss_pred             CccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccch
Q 044082          147 KFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYH  226 (243)
Q Consensus       147 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~  226 (243)
                      .+..+..+++|++|++++|.++..+.  ..+..+++|++|++++|.+.+..+  ..+..+ ++|+.|++++|.+++..+.
T Consensus       145 ~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l-~~L~~L~l~~n~l~~~~~~  219 (285)
T 1ozn_A          145 PDDTFRDLGNLTHLFLHGNRISSVPE--RAFRGLHSLDRLLLHQNRVAHVHP--HAFRDL-GRLMTLYLFANNLSALPTE  219 (285)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECT--TTTTTCTTCCEEECCSSCCCEECT--TTTTTC-TTCCEEECCSSCCSCCCHH
T ss_pred             CHhHhccCCCccEEECCCCcccccCH--HHhcCccccCEEECCCCcccccCH--hHccCc-ccccEeeCCCCcCCcCCHH
Confidence            66667777888888888887776643  256777888888888888877666  566666 8888888888888865556


Q ss_pred             hHHhhhccCceeeCCCC
Q 044082          227 WLFKISSNLLALDLNSN  243 (243)
Q Consensus       227 ~l~~l~~~L~~L~l~~N  243 (243)
                      .+..+++ |++|++++|
T Consensus       220 ~~~~l~~-L~~L~l~~N  235 (285)
T 1ozn_A          220 ALAPLRA-LQYLRLNDN  235 (285)
T ss_dssp             HHTTCTT-CCEEECCSS
T ss_pred             HcccCcc-cCEEeccCC
Confidence            6788888 888888876

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.91  E-value=8.6e-24  Score=192.68  Aligned_cols=169  Identities=30%  Similarity=0.360  Sum_probs=126.2

Q ss_pred             CCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccC
Q 044082           67 NRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVS  146 (243)
Q Consensus        67 ~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~  146 (243)
                      +|.+.+.+|..+.++++|++|++++|.+++. +|..++.+++|++|++++|.+.+.+|..++.+++|++|++++|.+++.
T Consensus       475 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~  553 (768)
T 3rgz_A          475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGE-IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT  553 (768)
T ss_dssp             SSCCCSCCCGGGGGCTTCCEEECCSSCCCSC-CCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESB
T ss_pred             CCcccCcCCHHHhcCCCCCEEEccCCccCCc-CChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCc
Confidence            3566777777777777777777777777765 677777777777777777777777777777777777777777776654


Q ss_pred             Cccc----------------------------------------------------------------------cCCCCC
Q 044082          147 KFGW----------------------------------------------------------------------LSHLNK  156 (243)
Q Consensus       147 ~~~~----------------------------------------------------------------------l~~l~~  156 (243)
                      +|..                                                                      +..+++
T Consensus       554 ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~  633 (768)
T 3rgz_A          554 IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS  633 (768)
T ss_dssp             CCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBC
T ss_pred             CChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcccc
Confidence            4432                                                                      223456


Q ss_pred             CCEEEcCCccccCC-cchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccC
Q 044082          157 LTQLDLDFVDLSEA-SDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNL  235 (243)
Q Consensus       157 L~~L~l~~n~l~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L  235 (243)
                      |++|++++|.+++. |.   .++.++.|+.|++++|.+++..|  ..+..+ ++|+.|||++|+++|.+|..+..++. |
T Consensus       634 L~~LdLs~N~l~g~ip~---~l~~l~~L~~L~Ls~N~l~g~ip--~~l~~L-~~L~~LdLs~N~l~g~ip~~l~~l~~-L  706 (768)
T 3rgz_A          634 MMFLDMSYNMLSGYIPK---EIGSMPYLFILNLGHNDISGSIP--DEVGDL-RGLNILDLSSNKLDGRIPQAMSALTM-L  706 (768)
T ss_dssp             CCEEECCSSCCBSCCCG---GGGGCTTCCEEECCSSCCCSCCC--GGGGGC-TTCCEEECCSSCCEECCCGGGGGCCC-C
T ss_pred             ccEEECcCCcccccCCH---HHhccccCCEEeCcCCccCCCCC--hHHhCC-CCCCEEECCCCcccCcCChHHhCCCC-C
Confidence            77777777777765 43   77788888888888888888777  677777 88888888888888888888888888 8


Q ss_pred             ceeeCCCC
Q 044082          236 LALDLNSN  243 (243)
Q Consensus       236 ~~L~l~~N  243 (243)
                      ++|++++|
T Consensus       707 ~~L~ls~N  714 (768)
T 3rgz_A          707 TEIDLSNN  714 (768)
T ss_dssp             SEEECCSS
T ss_pred             CEEECcCC
Confidence            88888876

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.91  E-value=9.1e-24  Score=170.90  Aligned_cols=179  Identities=21%  Similarity=0.151  Sum_probs=160.2

Q ss_pred             CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCcc-ccccCCcCCC
Q 044082           50 GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLAN-FSGRIPYQLG  128 (243)
Q Consensus        50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~  128 (243)
                      ..++.|++++        |.+.+..+..+.++++|++|++++|.++.. .+..+..+++|++|++++|. +....+..+.
T Consensus        32 ~~l~~L~l~~--------n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~  102 (285)
T 1ozn_A           32 AASQRIFLHG--------NRISHVPAASFRACRNLTILWLHSNVLARI-DAAAFTGLALLEQLDLSDNAQLRSVDPATFH  102 (285)
T ss_dssp             TTCSEEECTT--------SCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSCTTCCCCCTTTTT
T ss_pred             CCceEEEeeC--------CcCCccCHHHcccCCCCCEEECCCCcccee-CHhhcCCccCCCEEeCCCCCCccccCHHHhc
Confidence            5789999999        588877777899999999999999999885 68889999999999999997 7756678899


Q ss_pred             CCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCC
Q 044082          129 NLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSST  208 (243)
Q Consensus       129 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~  208 (243)
                      .+++|++|++++|.++...+..+..+++|++|++++|.+...+.  ..+..+++|++|++++|.+++..+  ..+..+ +
T Consensus       103 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l-~  177 (285)
T 1ozn_A          103 GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD--DTFRDLGNLTHLFLHGNRISSVPE--RAFRGL-H  177 (285)
T ss_dssp             TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCCEECT--TTTTTC-T
T ss_pred             CCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH--hHhccCCCccEEECCCCcccccCH--HHhcCc-c
Confidence            99999999999999998888889999999999999999998853  367889999999999999988766  456667 9


Q ss_pred             CCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082          209 SLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       209 ~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N  243 (243)
                      +|+.|++++|.+++..|..+..+++ |++|++++|
T Consensus       178 ~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n  211 (285)
T 1ozn_A          178 SLDRLLLHQNRVAHVHPHAFRDLGR-LMTLYLFAN  211 (285)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTT-CCEEECCSS
T ss_pred             ccCEEECCCCcccccCHhHccCccc-ccEeeCCCC
Confidence            9999999999999877899999999 999999987

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.90  E-value=7.6e-24  Score=172.98  Aligned_cols=135  Identities=26%  Similarity=0.250  Sum_probs=71.0

Q ss_pred             hcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCcccc-CCccccCCCCCCCEEEcCCccccCCcchHHHhhccc
Q 044082          103 IGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYV-SKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLA  181 (243)
Q Consensus       103 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~  181 (243)
                      +..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ ..|..+..+++|++|++++|.+.+.+  +..+..++
T Consensus       122 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~  199 (306)
T 2z66_A          122 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS--PTAFNSLS  199 (306)
T ss_dssp             TTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC--TTTTTTCT
T ss_pred             hhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcC--HHHhcCCC
Confidence            3344444444444444443334444444555555555554443 23444555555555555555555441  12455555


Q ss_pred             cccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhh-ccCceeeCCCC
Q 044082          182 SLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKIS-SNLLALDLNSN  243 (243)
Q Consensus       182 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~-~~L~~L~l~~N  243 (243)
                      +|++|++++|.+++..+  ..+..+ ++|+.|++++|.+++..|..+..++ + |++|++++|
T Consensus       200 ~L~~L~L~~N~l~~~~~--~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~~~~~-L~~L~L~~N  258 (306)
T 2z66_A          200 SLQVLNMSHNNFFSLDT--FPYKCL-NSLQVLDYSLNHIMTSKKQELQHFPSS-LAFLNLTQN  258 (306)
T ss_dssp             TCCEEECTTSCCSBCCS--GGGTTC-TTCCEEECTTSCCCBCSSSSCCCCCTT-CCEEECTTC
T ss_pred             CCCEEECCCCccCccCh--hhccCc-ccCCEeECCCCCCcccCHHHHHhhhcc-CCEEEccCC
Confidence            66666666666655544  344444 6666666666666665555566554 4 666666665

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=1.3e-22  Score=164.63  Aligned_cols=175  Identities=23%  Similarity=0.214  Sum_probs=155.1

Q ss_pred             CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCC
Q 044082           50 GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN  129 (243)
Q Consensus        50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~  129 (243)
                      ..++.|++++        |.+.+..+..+.++++|++|++++|.++.  ++.. ..+++|++|++++|.+. .+|..+..
T Consensus        31 ~~l~~L~L~~--------N~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~-~~l~~L~~L~Ls~N~l~-~l~~~~~~   98 (290)
T 1p9a_G           31 KDTTILHLSE--------NLLYTFSLATLMPYTRLTQLNLDRAELTK--LQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQT   98 (290)
T ss_dssp             TTCCEEECTT--------SCCSEEEGGGGTTCTTCCEEECTTSCCCE--EECC-SCCTTCCEEECCSSCCS-SCCCCTTT
T ss_pred             CCCCEEEcCC--------CcCCccCHHHhhcCCCCCEEECCCCccCc--ccCC-CCCCcCCEEECCCCcCC-cCchhhcc
Confidence            5788999999        58888778899999999999999999987  4443 78999999999999998 78888899


Q ss_pred             CCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCC
Q 044082          130 LTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTS  209 (243)
Q Consensus       130 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~  209 (243)
                      +++|++|++++|+++...+..+..+++|++|++++|.+...+.  ..+..+++|+.|++++|+++.+++  ..+..+ ++
T Consensus        99 l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~L~~N~l~~l~~--~~~~~l-~~  173 (290)
T 1p9a_G           99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP--GLLTPTPKLEKLSLANNNLTELPA--GLLNGL-EN  173 (290)
T ss_dssp             CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT--TTTTTCTTCCEEECTTSCCSCCCT--TTTTTC-TT
T ss_pred             CCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccCh--hhcccccCCCEEECCCCcCCccCH--HHhcCc-CC
Confidence            9999999999999998877889999999999999999998853  367889999999999999998776  445566 99


Q ss_pred             CcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082          210 LALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       210 L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N  243 (243)
                      |+.|++++|+++ .+|..+..... |+.+++++|
T Consensus       174 L~~L~L~~N~l~-~ip~~~~~~~~-L~~l~L~~N  205 (290)
T 1p9a_G          174 LDTLLLQENSLY-TIPKGFFGSHL-LPFAFLHGN  205 (290)
T ss_dssp             CCEEECCSSCCC-CCCTTTTTTCC-CSEEECCSC
T ss_pred             CCEEECCCCcCC-ccChhhccccc-CCeEEeCCC
Confidence            999999999999 78888888888 999999987

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=5.3e-22  Score=159.61  Aligned_cols=157  Identities=26%  Similarity=0.235  Sum_probs=83.6

Q ss_pred             hccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCC
Q 044082           78 LLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKL  157 (243)
Q Consensus        78 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  157 (243)
                      +..+++|++|++++|.++.  + +.+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|
T Consensus        59 l~~l~~L~~L~l~~n~l~~--~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  135 (272)
T 3rfs_A           59 IQYLPNVRYLALGGNKLHD--I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNL  135 (272)
T ss_dssp             GGGCTTCCEEECTTSCCCC--C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred             cccCCCCcEEECCCCCCCC--c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCC
Confidence            4555555555555555544  2 245555555555555555554444445555555555555555555444445555555


Q ss_pred             CEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCce
Q 044082          158 TQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLA  237 (243)
Q Consensus       158 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~  237 (243)
                      ++|++++|.+.+.+.  ..+..+++|++|++++|.+++..+  ..+..+ ++|+.|++++|.+++..+..+..+++ |++
T Consensus       136 ~~L~L~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~  209 (272)
T 3rfs_A          136 TYLNLAHNQLQSLPK--GVFDKLTNLTELDLSYNQLQSLPE--GVFDKL-TQLKDLRLYQNQLKSVPDGVFDRLTS-LQY  209 (272)
T ss_dssp             CEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCCCCCT--TTTTTC-TTCCEEECCSSCCSCCCTTTTTTCTT-CCE
T ss_pred             CEEECCCCccCccCH--HHhccCccCCEEECCCCCcCccCH--HHhcCC-ccCCEEECCCCcCCccCHHHHhCCcC-CCE
Confidence            555555555555432  134555555555555555555444  233344 55555555555555444444555555 555


Q ss_pred             eeCCCC
Q 044082          238 LDLNSN  243 (243)
Q Consensus       238 L~l~~N  243 (243)
                      |++++|
T Consensus       210 L~l~~N  215 (272)
T 3rfs_A          210 IWLHDN  215 (272)
T ss_dssp             EECCSS
T ss_pred             EEccCC
Confidence            555554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.89  E-value=1.7e-22  Score=173.61  Aligned_cols=98  Identities=21%  Similarity=0.171  Sum_probs=61.8

Q ss_pred             cceEEecCCC---------CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCc
Q 044082           40 WSGVQCSNRT---------GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLR  110 (243)
Q Consensus        40 ~~~~~c~~~~---------~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  110 (243)
                      |..+.|....         ..++.|+|++|        .+.+..+..+.++++|++|++++|.++.. .+..+..+++|+
T Consensus        56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n--------~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~  126 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMEN--------NIQMIQADTFRHLHHLEVLQLGRNSIRQI-EVGAFNGLASLN  126 (452)
T ss_dssp             SCEEECCSSCCSSCCSCCCTTCSEEECCSS--------CCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCC
T ss_pred             CcEEEECCCCcCccCCCCCCCccEEECcCC--------cCceECHHHcCCCCCCCEEECCCCccCCc-ChhhccCcccCC
Confidence            5677775432         47899999995        66655566666666666666666666654 445566666666


Q ss_pred             EEecCCccccccCCcCCCCCCCCcEEEccCCccccC
Q 044082          111 FLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVS  146 (243)
Q Consensus       111 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~  146 (243)
                      +|++++|.+.+..+..+..+++|++|++++|.++..
T Consensus       127 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  162 (452)
T 3zyi_A          127 TLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESI  162 (452)
T ss_dssp             EEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEE
T ss_pred             EEECCCCcCCccChhhhcccCCCCEEECCCCCccee
Confidence            666666666644444455566666666666655543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.88  E-value=2.7e-22  Score=171.78  Aligned_cols=96  Identities=23%  Similarity=0.197  Sum_probs=48.7

Q ss_pred             cceEEecCCC---------CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCc
Q 044082           40 WSGVQCSNRT---------GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLR  110 (243)
Q Consensus        40 ~~~~~c~~~~---------~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  110 (243)
                      |..+.|....         ..++.|+|++|        .+.+..+..+.++++|++|++++|.++.. .+..+..+++|+
T Consensus        45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n--------~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~  115 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGISTNTRLLNLHEN--------QIQIIKVNSFKHLRHLEILQLSRNHIRTI-EIGAFNGLANLN  115 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCCTTCSEEECCSC--------CCCEECTTTTSSCSSCCEEECCSSCCCEE-CGGGGTTCSSCC
T ss_pred             CCEEEeCCCCcCcCCCCCCCCCcEEEccCC--------cCCeeCHHHhhCCCCCCEEECCCCcCCcc-ChhhccCCccCC
Confidence            5677775422         46788999985        44444444445555555555555544443 334444444455


Q ss_pred             EEecCCccccccCCcCCCCCCCCcEEEccCCccc
Q 044082          111 FLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLY  144 (243)
Q Consensus       111 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~  144 (243)
                      +|++++|.++...+..+..+++|++|++++|.++
T Consensus       116 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~  149 (440)
T 3zyj_A          116 TLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE  149 (440)
T ss_dssp             EEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCC
T ss_pred             EEECCCCcCCeeCHhHhhccccCceeeCCCCccc
Confidence            5555444444322233444444444444444443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.88  E-value=1.1e-22  Score=167.83  Aligned_cols=165  Identities=24%  Similarity=0.278  Sum_probs=147.8

Q ss_pred             CCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcC---------CCCCcEEecCCccccccCCcCCCCCCCCcEEEc
Q 044082           68 RPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGF---------FTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNL  138 (243)
Q Consensus        68 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~---------l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  138 (243)
                      |.+. .+|..++++++|++|++++|.+.+. +|..+..         +++|++|++++|.+. .+|..++.+++|++|++
T Consensus       137 n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~-~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L  213 (328)
T 4fcg_A          137 NPLR-ALPASIASLNRLRELSIRACPELTE-LPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKI  213 (328)
T ss_dssp             CCCC-CCCGGGGGCTTCCEEEEEEETTCCC-CCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEE
T ss_pred             Cccc-cCcHHHhcCcCCCEEECCCCCCccc-cChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEc
Confidence            6777 7899999999999999999988876 8877654         999999999999999 88888999999999999


Q ss_pred             cCCccccCCccccCCCCCCCEEEcCCccccCC-cchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCC
Q 044082          139 GYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEA-SDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSS  217 (243)
Q Consensus       139 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~  217 (243)
                      ++|.+++ +|..+..+++|++|++++|.+.+. |.   .+..+++|++|++++|.+.+..+  ..+..+ ++|+.|++++
T Consensus       214 ~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~---~~~~l~~L~~L~L~~n~~~~~~p--~~~~~l-~~L~~L~L~~  286 (328)
T 4fcg_A          214 RNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPP---IFGGRAPLKRLILKDCSNLLTLP--LDIHRL-TQLEKLDLRG  286 (328)
T ss_dssp             ESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCC---CTTCCCCCCEEECTTCTTCCBCC--TTGGGC-TTCCEEECTT
T ss_pred             cCCCCCc-CchhhccCCCCCEEECcCCcchhhhHH---HhcCCCCCCEEECCCCCchhhcc--hhhhcC-CCCCEEeCCC
Confidence            9999986 556799999999999999988776 44   78899999999999999988887  677777 9999999999


Q ss_pred             CccccccchhHHhhhccCceeeCCCC
Q 044082          218 CGLSNSAYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       218 n~i~~~~~~~l~~l~~~L~~L~l~~N  243 (243)
                      |.+.+.+|.+++++++ ++.+++..|
T Consensus       287 n~~~~~iP~~l~~L~~-L~~l~l~~~  311 (328)
T 4fcg_A          287 CVNLSRLPSLIAQLPA-NCIILVPPH  311 (328)
T ss_dssp             CTTCCCCCGGGGGSCT-TCEEECCGG
T ss_pred             CCchhhccHHHhhccC-ceEEeCCHH
Confidence            9999999999999999 999988653

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=1.8e-21  Score=154.64  Aligned_cols=187  Identities=24%  Similarity=0.275  Sum_probs=161.4

Q ss_pred             CCcccceEEecCCCCceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecC
Q 044082           36 DCCKWSGVQCSNRTGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLS  115 (243)
Q Consensus        36 ~~~~~~~~~c~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~  115 (243)
                      .|+.|.|..|..   ..+.+++++        +.++ .+|..+.  ++++.|++++|.++.. .+..+..+++|++|+++
T Consensus         3 ~Cp~~~gC~C~~---~~~~l~~~~--------~~l~-~~p~~~~--~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~   67 (251)
T 3m19_A            3 TCETVTGCTCNE---GKKEVDCQG--------KSLD-SVPSGIP--ADTEKLDLQSTGLATL-SDATFRGLTKLTWLNLD   67 (251)
T ss_dssp             -CHHHHSSEEEG---GGTEEECTT--------CCCS-SCCSCCC--TTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECT
T ss_pred             cCCCCCceEcCC---CCeEEecCC--------CCcc-ccCCCCC--CCCCEEEccCCCcCcc-CHhHhcCcccCCEEECC
Confidence            577899999953   456789998        3655 4555444  6899999999999986 77789999999999999


Q ss_pred             CccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCC
Q 044082          116 LANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPS  195 (243)
Q Consensus       116 ~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~  195 (243)
                      +|.+.+..+..+..+++|++|++++|.++...+..+..+++|++|++++|.+...+.  ..+..+++|++|++++|.+++
T Consensus        68 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~Ls~N~l~~  145 (251)
T 3m19_A           68 YNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS--GVFDRLTKLKELRLNTNQLQS  145 (251)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCCC
T ss_pred             CCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcCh--hHhccCCcccEEECcCCcCCc
Confidence            999997777788999999999999999998877888999999999999999998853  357889999999999999998


Q ss_pred             CCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082          196 INRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       196 ~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N  243 (243)
                      +++  ..+..+ ++|+.|++++|.+++..+..+..+++ |++|++++|
T Consensus       146 ~~~--~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~l~~N  189 (251)
T 3m19_A          146 IPA--GAFDKL-TNLQTLSLSTNQLQSVPHGAFDRLGK-LQTITLFGN  189 (251)
T ss_dssp             CCT--TTTTTC-TTCCEEECCSSCCSCCCTTTTTTCTT-CCEEECCSC
T ss_pred             cCH--HHcCcC-cCCCEEECCCCcCCccCHHHHhCCCC-CCEEEeeCC
Confidence            876  566677 99999999999999766678888998 999999987

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.88  E-value=2.3e-22  Score=164.19  Aligned_cols=177  Identities=24%  Similarity=0.237  Sum_probs=103.6

Q ss_pred             CceEEEecCCCCCCCCCCCCcc--cccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCC-cC
Q 044082           50 GHVIMLNLKYKVDPVCPNRPLR--GNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIP-YQ  126 (243)
Q Consensus        50 ~~l~~L~l~~~~~~~~~~~~~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~  126 (243)
                      .+++.|++++        |.+.  +..+..+..+++|++|++++|.++.  +|..+..+++|++|++++|.+.+..+ ..
T Consensus        52 ~~L~~L~L~~--------n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~--l~~~~~~l~~L~~L~l~~n~l~~~~~~~~  121 (306)
T 2z66_A           52 TQLTKLSLSS--------NGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT--MSSNFLGLEQLEHLDFQHSNLKQMSEFSV  121 (306)
T ss_dssp             TTCSEEECCS--------SCCCEEEEEEHHHHSCSCCCEEECCSCSEEE--EEEEEETCTTCCEEECTTSEEESSTTTTT
T ss_pred             ccCCEEECCC--------CccCcccCcccccccccccCEEECCCCcccc--ChhhcCCCCCCCEEECCCCcccccccchh
Confidence            4566666666        3444  2234555556666666666666654  45556666666666666666663333 34


Q ss_pred             CCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccC--CcchHHHhhccccccccccccccCCCCCCCCcccc
Q 044082          127 LGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSE--ASDWLQVITSLASLRDLYLASSTLPSINRPSLSSM  204 (243)
Q Consensus       127 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~  204 (243)
                      +..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+  .+.   .+..+++|++|++++|.+++..+  ..+.
T Consensus       122 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~--~~~~  196 (306)
T 2z66_A          122 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD---IFTELRNLTFLDLSQCQLEQLSP--TAFN  196 (306)
T ss_dssp             TTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECS---CCTTCTTCCEEECTTSCCCEECT--TTTT
T ss_pred             hhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchh---HHhhCcCCCEEECCCCCcCCcCH--HHhc
Confidence            5566666666666666665555556666666666666666654  232   45556666666666666665544  3444


Q ss_pred             cCCCCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082          205 NSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       205 ~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N  243 (243)
                      .+ ++|+.|++++|.+++..+..+..+++ |++|++++|
T Consensus       197 ~l-~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~L~~N  233 (306)
T 2z66_A          197 SL-SSLQVLNMSHNNFFSLDTFPYKCLNS-LQVLDYSLN  233 (306)
T ss_dssp             TC-TTCCEEECTTSCCSBCCSGGGTTCTT-CCEEECTTS
T ss_pred             CC-CCCCEEECCCCccCccChhhccCccc-CCEeECCCC
Confidence            44 66666666666666544445555555 666666654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.88  E-value=9.9e-22  Score=162.31  Aligned_cols=188  Identities=23%  Similarity=0.211  Sum_probs=118.5

Q ss_pred             CcccceEEecCCC---------CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCC
Q 044082           37 CCKWSGVQCSNRT---------GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFT  107 (243)
Q Consensus        37 ~~~~~~~~c~~~~---------~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  107 (243)
                      .|.|+.+.|....         ..++.|++++|        .+.+..+..+.++++|++|++++|.++.. .|..+..++
T Consensus        32 ~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n--------~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~  102 (332)
T 2ft3_A           32 HCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNN--------DISELRKDDFKGLQHLYALVLVNNKISKI-HEKAFSPLR  102 (332)
T ss_dssp             EEETTEEECCSSCCSSCCSCCCTTCCEEECCSS--------CCCEECTTTTTTCTTCCEEECCSSCCCEE-CGGGSTTCT
T ss_pred             cccCCEEECCCCCccccCCCCCCCCeEEECCCC--------cCCccCHhHhhCCCCCcEEECCCCccCcc-CHhHhhCcC
Confidence            4678888886422         47899999994        66665566777777777777777777764 566777777


Q ss_pred             CCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCcccc-------------------
Q 044082          108 KLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLS-------------------  168 (243)
Q Consensus       108 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-------------------  168 (243)
                      +|++|++++|.+. .+|..+.  ++|++|++++|.++...+..+..+++|++|++++|.+.                   
T Consensus       103 ~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l  179 (332)
T 2ft3_A          103 KLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRI  179 (332)
T ss_dssp             TCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBC
T ss_pred             CCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEEC
Confidence            7777777777766 4444332  45555555555555443344444455555554444443                   


Q ss_pred             ---------------------------CCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccc
Q 044082          169 ---------------------------EASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLS  221 (243)
Q Consensus       169 ---------------------------~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~  221 (243)
                                                 +.+  +..+..+++|++|++++|.+.+..+  ..+..+ ++|+.|++++|.++
T Consensus       180 ~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~--~~~l~~l~~L~~L~L~~N~l~~~~~--~~~~~l-~~L~~L~L~~N~l~  254 (332)
T 2ft3_A          180 SEAKLTGIPKDLPETLNELHLDHNKIQAIE--LEDLLRYSKLYRLGLGHNQIRMIEN--GSLSFL-PTLRELHLDNNKLS  254 (332)
T ss_dssp             CSSBCSSCCSSSCSSCSCCBCCSSCCCCCC--TTSSTTCTTCSCCBCCSSCCCCCCT--TGGGGC-TTCCEEECCSSCCC
T ss_pred             cCCCCCccCccccCCCCEEECCCCcCCccC--HHHhcCCCCCCEEECCCCcCCcCCh--hHhhCC-CCCCEEECCCCcCe
Confidence                                       221  1244555666666666666666554  345555 77777777777777


Q ss_pred             cccchhHHhhhccCceeeCCCC
Q 044082          222 NSAYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       222 ~~~~~~l~~l~~~L~~L~l~~N  243 (243)
                       .+|..+..+++ |++|++++|
T Consensus       255 -~lp~~l~~l~~-L~~L~l~~N  274 (332)
T 2ft3_A          255 -RVPAGLPDLKL-LQVVYLHTN  274 (332)
T ss_dssp             -BCCTTGGGCTT-CCEEECCSS
T ss_pred             -ecChhhhcCcc-CCEEECCCC
Confidence             56766777777 777777765

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.87  E-value=1.1e-21  Score=168.44  Aligned_cols=138  Identities=19%  Similarity=0.155  Sum_probs=90.2

Q ss_pred             CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCC
Q 044082           50 GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN  129 (243)
Q Consensus        50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~  129 (243)
                      .++++|||++|        .+.+..|..++++++|++|++++|.+.....+..+..+++|++|++++|.+.+..|..++.
T Consensus        30 ~~l~~L~Ls~n--------~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  101 (455)
T 3v47_A           30 AHVNYVDLSLN--------SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNG  101 (455)
T ss_dssp             TTCCEEECCSS--------CCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTT
T ss_pred             CccCEEEecCC--------ccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccC
Confidence            57899999994        6666666677777777777777776654312455667777777777777776556666667


Q ss_pred             CCCCcEEEccCCccccCCccc--cCCCCCCCEEEcCCccccCC-cchHHHhhccccccccccccccCCCCC
Q 044082          130 LTNLQSLNLGYNSLYVSKFGW--LSHLNKLTQLDLDFVDLSEA-SDWLQVITSLASLRDLYLASSTLPSIN  197 (243)
Q Consensus       130 l~~L~~L~l~~n~l~~~~~~~--l~~l~~L~~L~l~~n~l~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~  197 (243)
                      +++|++|++++|.+++..+..  +..+++|++|++++|.+.+. +.  ..+..+++|++|++++|.+.+..
T Consensus       102 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~  170 (455)
T 3v47_A          102 LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA--SFFLNMRRFHVLDLTFNKVKSIC  170 (455)
T ss_dssp             CTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCC--GGGGGCTTCCEEECTTCCBSCCC
T ss_pred             cccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcc--cccCCCCcccEEeCCCCcccccC
Confidence            777777777777766533333  66666677777777766665 32  12556666666666666655543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.87  E-value=1.6e-22  Score=168.34  Aligned_cols=194  Identities=23%  Similarity=0.189  Sum_probs=157.1

Q ss_pred             CCCCCcccceEEecCC-----------CCceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcch
Q 044082           33 GRKDCCKWSGVQCSNR-----------TGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPE  101 (243)
Q Consensus        33 ~~~~~~~~~~~~c~~~-----------~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  101 (243)
                      .....|.|.++ |.-.           ...++.|++++        |.+++..+..+.++++|++|++++|.++.. .+.
T Consensus        25 ~~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~--------n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~   94 (353)
T 2z80_A           25 QASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSN--------NRITYISNSDLQRCVNLQALVLTSNGINTI-EED   94 (353)
T ss_dssp             --CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTT--------SCCCEECTTTTTTCTTCCEEECTTSCCCEE-CTT
T ss_pred             ccCCCCCCCeE-eeCCCCCcccccccccccCcEEECCC--------CcCcccCHHHhccCCCCCEEECCCCccCcc-CHh
Confidence            46678888887 5421           24789999999        588876666899999999999999999885 677


Q ss_pred             hhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCc-cccCCCCCCCEEEcCCc-cccCCcchHHHhhc
Q 044082          102 FIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKF-GWLSHLNKLTQLDLDFV-DLSEASDWLQVITS  179 (243)
Q Consensus       102 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~~~  179 (243)
                      .+..+++|++|++++|.+++..+..++.+++|++|++++|.++...+ ..+..+++|++|++++| .+...+.  ..+..
T Consensus        95 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~--~~~~~  172 (353)
T 2z80_A           95 SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR--KDFAG  172 (353)
T ss_dssp             TTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT--TTTTT
T ss_pred             hcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCH--HHccC
Confidence            89999999999999999995444448899999999999999986544 47889999999999999 4666632  37788


Q ss_pred             cccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhH-HhhhccCceeeCCCC
Q 044082          180 LASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWL-FKISSNLLALDLNSN  243 (243)
Q Consensus       180 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l-~~l~~~L~~L~l~~N  243 (243)
                      +++|++|++++|.+.+..+  ..+..+ ++|++|++++|.++ .+|..+ ..+++ |++|++++|
T Consensus       173 l~~L~~L~l~~n~l~~~~~--~~l~~l-~~L~~L~l~~n~l~-~~~~~~~~~~~~-L~~L~L~~n  232 (353)
T 2z80_A          173 LTFLEELEIDASDLQSYEP--KSLKSI-QNVSHLILHMKQHI-LLLEIFVDVTSS-VECLELRDT  232 (353)
T ss_dssp             CCEEEEEEEEETTCCEECT--TTTTTC-SEEEEEEEECSCST-THHHHHHHHTTT-EEEEEEESC
T ss_pred             CCCCCEEECCCCCcCccCH--HHHhcc-ccCCeecCCCCccc-cchhhhhhhccc-ccEEECCCC
Confidence            9999999999999988776  567777 99999999999997 455544 45677 999999876

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.87  E-value=1.6e-21  Score=173.05  Aligned_cols=106  Identities=15%  Similarity=0.063  Sum_probs=70.9

Q ss_pred             CCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCcc
Q 044082           64 VCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSL  143 (243)
Q Consensus        64 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l  143 (243)
                      ++.+|.+.+..+..++.+++|++|++++|.++.. .|..++.+++|++|++++|.+.+..+..++.+++|++|++++|.+
T Consensus        81 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l  159 (597)
T 3oja_B           81 NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL  159 (597)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             ECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCC-CHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcC
Confidence            3334566665556677777777777777777665 555667777777777777777743333456777777777777777


Q ss_pred             ccCCccccCCCCCCCEEEcCCccccCC
Q 044082          144 YVSKFGWLSHLNKLTQLDLDFVDLSEA  170 (243)
Q Consensus       144 ~~~~~~~l~~l~~L~~L~l~~n~l~~~  170 (243)
                      ++..|..+..+++|++|++++|.+...
T Consensus       160 ~~~~~~~~~~l~~L~~L~L~~N~l~~~  186 (597)
T 3oja_B          160 ERIEDDTFQATTSLQNLQLSSNRLTHV  186 (597)
T ss_dssp             CBCCTTTTTTCTTCCEEECTTSCCSBC
T ss_pred             CCCChhhhhcCCcCcEEECcCCCCCCc
Confidence            766666677777777777777766654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.87  E-value=4.1e-22  Score=153.94  Aligned_cols=176  Identities=22%  Similarity=0.238  Sum_probs=144.4

Q ss_pred             CcccceEEecCCC---------CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCC
Q 044082           37 CCKWSGVQCSNRT---------GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFT  107 (243)
Q Consensus        37 ~~~~~~~~c~~~~---------~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  107 (243)
                      .|.|.++.|....         .+++.|++++        |.+.+..+..+.++++|++|++++|.++.. .+..+..++
T Consensus         6 ~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~--------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~   76 (208)
T 2o6s_A            6 SCSGTTVECYSQGRTSVPTGIPAQTTYLDLET--------NSLKSLPNGVFDELTSLTQLYLGGNKLQSL-PNGVFNKLT   76 (208)
T ss_dssp             EEETTEEECCSSCCSSCCSCCCTTCSEEECCS--------SCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCT
T ss_pred             EECCCEEEecCCCccCCCCCCCCCCcEEEcCC--------CccCcCChhhhcccccCcEEECCCCccCcc-ChhhcCCCC
Confidence            4689999986432         4688999999        577766666788999999999999999875 556678899


Q ss_pred             CCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccc
Q 044082          108 KLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLY  187 (243)
Q Consensus       108 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~  187 (243)
                      +|++|++++|.+.+..+..+..+++|++|++++|.++...+..+..+++|++|++++|.+++.+.  ..+..+++|++|+
T Consensus        77 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~--~~~~~l~~L~~L~  154 (208)
T 2o6s_A           77 SLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD--GVFDRLTSLQYIW  154 (208)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCEEE
T ss_pred             CcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCH--HHhccCCCccEEE
Confidence            99999999999986555667889999999999999987777778889999999999999988853  3578889999999


Q ss_pred             cccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhc
Q 044082          188 LASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISS  233 (243)
Q Consensus       188 l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~  233 (243)
                      +++|.+.+.         + ++|+.|++..|.++|.+|.+++.++.
T Consensus       155 l~~N~~~~~---------~-~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          155 LHDNPWDCT---------C-PGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             CCSCCBCCC---------T-TTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             ecCCCeecC---------C-CCHHHHHHHHHhCCceeeccCccccC
Confidence            999976542         2 67888899999999999988877654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.87  E-value=3.8e-22  Score=172.40  Aligned_cols=178  Identities=20%  Similarity=0.191  Sum_probs=108.3

Q ss_pred             CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCC
Q 044082           50 GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN  129 (243)
Q Consensus        50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~  129 (243)
                      ..++.|+|++|        .+.+..+..+.++++|++|++++|.++.. .|..+..+++|++|++++|.+.+..+..+..
T Consensus        32 ~~l~~L~L~~n--------~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  102 (477)
T 2id5_A           32 TETRLLDLGKN--------RIKTLNQDEFASFPHLEELELNENIVSAV-EPGAFNNLFNLRTLGLRSNRLKLIPLGVFTG  102 (477)
T ss_dssp             TTCSEEECCSS--------CCCEECTTTTTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCSCCTTSSTT
T ss_pred             CCCcEEECCCC--------ccceECHhHccCCCCCCEEECCCCccCEe-ChhhhhCCccCCEEECCCCcCCccCcccccC
Confidence            46788888884        66665566667777777777777766664 5666667777777777777666443444566


Q ss_pred             CCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCC
Q 044082          130 LTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTS  209 (243)
Q Consensus       130 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~  209 (243)
                      +++|++|++++|.++...+..+..+++|++|++++|.+...+.  ..+..+++|++|++++|.+++..+  ..+..+ ++
T Consensus       103 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~--~~l~~l-~~  177 (477)
T 2id5_A          103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH--RAFSGLNSLEQLTLEKCNLTSIPT--EALSHL-HG  177 (477)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECT--TSSTTCTTCCEEEEESCCCSSCCH--HHHTTC-TT
T ss_pred             CCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeCh--hhccCCCCCCEEECCCCcCcccCh--hHhccc-CC
Confidence            6677777777776666556666666666666666666655521  245556666666666666655443  334444 55


Q ss_pred             CcEEECCCCccccccchhHHhhhccCceeeCCC
Q 044082          210 LALLDLSSCGLSNSAYHWLFKISSNLLALDLNS  242 (243)
Q Consensus       210 L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~  242 (243)
                      |+.|++++|.+.+..+..+..+++ |++|++++
T Consensus       178 L~~L~l~~n~i~~~~~~~~~~l~~-L~~L~l~~  209 (477)
T 2id5_A          178 LIVLRLRHLNINAIRDYSFKRLYR-LKVLEISH  209 (477)
T ss_dssp             CCEEEEESCCCCEECTTCSCSCTT-CCEEEEEC
T ss_pred             CcEEeCCCCcCcEeChhhcccCcc-cceeeCCC
Confidence            555555555555433334444444 44444443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.87  E-value=2e-22  Score=165.16  Aligned_cols=178  Identities=21%  Similarity=0.180  Sum_probs=131.4

Q ss_pred             CceEEEecCCCCCCCCCCCCcccccchhh--ccCCCCcEEEccCCCCCCCCcchhhcCC-----CCCcEEecCCcccccc
Q 044082           50 GHVIMLNLKYKVDPVCPNRPLRGNINSSL--LELQHLNYLDLSVNDFLGNPIPEFIGFF-----TKLRFLDLSLANFSGR  122 (243)
Q Consensus        50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~  122 (243)
                      .+++.|++++        |.+++.+|..+  ..+++|++|++++|.+++  .|..+..+     ++|++|++++|.+.+.
T Consensus        95 ~~L~~L~L~~--------n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~l~~~~~~~L~~L~L~~N~l~~~  164 (312)
T 1wwl_A           95 SGLQELTLEN--------LEVTGTAPPPLLEATGPDLNILNLRNVSWAT--RDAWLAELQQWLKPGLKVLSIAQAHSLNF  164 (312)
T ss_dssp             SCCCEEEEEE--------EBCBSCCCCCSSSCCSCCCSEEEEESCBCSS--SSSHHHHHHTTCCTTCCEEEEESCSCCCC
T ss_pred             CCccEEEccC--------CcccchhHHHHHHhcCCCccEEEccCCCCcc--hhHHHHHHHHhhcCCCcEEEeeCCCCccc
Confidence            4677888888        58888888766  888899999999998887  46666666     8899999999988877


Q ss_pred             CCcCCCCCCCCcEEEccCCccccC--Ccccc--CCCCCCCEEEcCCccccCCcchH-HHhhccccccccccccccCCCCC
Q 044082          123 IPYQLGNLTNLQSLNLGYNSLYVS--KFGWL--SHLNKLTQLDLDFVDLSEASDWL-QVITSLASLRDLYLASSTLPSIN  197 (243)
Q Consensus       123 ~~~~l~~l~~L~~L~l~~n~l~~~--~~~~l--~~l~~L~~L~l~~n~l~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~  197 (243)
                      .|..++.+++|++|++++|++.+.  .+..+  ..+++|++|++++|.+...+.++ ..+..+++|++|++++|.+++..
T Consensus       165 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  244 (312)
T 1wwl_A          165 SCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA  244 (312)
T ss_dssp             CTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC
T ss_pred             hHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc
Confidence            667888889999999999987653  23333  77888999999998888654332 23456788888888888888765


Q ss_pred             CCCcccccCCCCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082          198 RPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       198 ~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N  243 (243)
                      +. ..+..+ ++|+.|++++|.|+ .+|..+.  ++ |++|++++|
T Consensus       245 ~~-~~~~~l-~~L~~L~Ls~N~l~-~ip~~~~--~~-L~~L~Ls~N  284 (312)
T 1wwl_A          245 GA-PSCDWP-SQLNSLNLSFTGLK-QVPKGLP--AK-LSVLDLSYN  284 (312)
T ss_dssp             CC-SCCCCC-TTCCEEECTTSCCS-SCCSSCC--SE-EEEEECCSS
T ss_pred             ch-hhhhhc-CCCCEEECCCCccC-hhhhhcc--CC-ceEEECCCC
Confidence            31 223334 77777777777777 5666554  44 777777665

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.87  E-value=3.6e-21  Score=158.72  Aligned_cols=191  Identities=22%  Similarity=0.240  Sum_probs=133.6

Q ss_pred             CcccceEEecCC---------CCceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCC
Q 044082           37 CCKWSGVQCSNR---------TGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFT  107 (243)
Q Consensus        37 ~~~~~~~~c~~~---------~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  107 (243)
                      .|.|+.+.|...         ...++.|++++        |.+++..+..++++++|++|++++|.++.. .|..+..++
T Consensus        30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~--------n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~  100 (330)
T 1xku_A           30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQN--------NKITEIKDGDFKNLKNLHTLILINNKISKI-SPGAFAPLV  100 (330)
T ss_dssp             EEETTEEECTTSCCCSCCCSCCTTCCEEECCS--------SCCCCBCTTTTTTCTTCCEEECCSSCCCCB-CTTTTTTCT
T ss_pred             cCCCeEEEecCCCccccCccCCCCCeEEECCC--------CcCCEeChhhhccCCCCCEEECCCCcCCee-CHHHhcCCC
Confidence            467888888642         25788999999        578876667889999999999999999885 688899999


Q ss_pred             CCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccc
Q 044082          108 KLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLY  187 (243)
Q Consensus       108 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~  187 (243)
                      +|++|++++|.+. .+|..+.  ++|++|++++|.++...+..+..+++|++|++++|.+......+..+..+++|++|+
T Consensus       101 ~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~  177 (330)
T 1xku_A          101 KLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR  177 (330)
T ss_dssp             TCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEE
T ss_pred             CCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEE
Confidence            9999999999888 5565543  577777777777776655566667777777777776654211122455555555555


Q ss_pred             cccccCC---------------------CCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082          188 LASSTLP---------------------SINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       188 l~~n~~~---------------------~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N  243 (243)
                      +++|.++                     +..+  ..+..+ ++|+.|++++|.+++..+..+..+++ |++|++++|
T Consensus       178 l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~--~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L~~N  250 (330)
T 1xku_A          178 IADTNITTIPQGLPPSLTELHLDGNKITKVDA--ASLKGL-NNLAKLGLSFNSISAVDNGSLANTPH-LRELHLNNN  250 (330)
T ss_dssp             CCSSCCCSCCSSCCTTCSEEECTTSCCCEECT--GGGTTC-TTCCEEECCSSCCCEECTTTGGGSTT-CCEEECCSS
T ss_pred             CCCCccccCCccccccCCEEECCCCcCCccCH--HHhcCC-CCCCEEECCCCcCceeChhhccCCCC-CCEEECCCC
Confidence            5555544                     3333  344444 67777777777777555556677776 777777765

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.87  E-value=1.1e-21  Score=158.02  Aligned_cols=159  Identities=21%  Similarity=0.211  Sum_probs=81.2

Q ss_pred             hhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccC-CccccCCCC
Q 044082           77 SLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVS-KFGWLSHLN  155 (243)
Q Consensus        77 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~  155 (243)
                      .+.++++|++|++++|.++.. .+..+..+++|++|++++|.+.+..+..++.+++|++|++++|.++.. .|..+..++
T Consensus        71 ~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~  149 (276)
T 2z62_A           71 AYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT  149 (276)
T ss_dssp             TTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT
T ss_pred             HccCCcCCCEEECCCCccCcc-ChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCC
Confidence            444444444444444444432 333444444444444444444433333344444455555544444432 244444445


Q ss_pred             CCCEEEcCCccccCCcchHHHhhcccccc----ccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhh
Q 044082          156 KLTQLDLDFVDLSEASDWLQVITSLASLR----DLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKI  231 (243)
Q Consensus       156 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~----~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l  231 (243)
                      +|++|++++|.+.+.+.  ..+..+.+|+    .|++++|.+.+..+   ..... .+|+.|++++|.+++..+..+..+
T Consensus       150 ~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~l~l~L~ls~n~l~~~~~---~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l  223 (276)
T 2z62_A          150 NLEHLDLSSNKIQSIYC--TDLRVLHQMPLLNLSLDLSLNPMNFIQP---GAFKE-IRLKELALDTNQLKSVPDGIFDRL  223 (276)
T ss_dssp             TCCEEECCSSCCCEECG--GGGHHHHTCTTCCEEEECCSSCCCEECT---TSSCS-CCEEEEECCSSCCSCCCTTTTTTC
T ss_pred             CCCEEECCCCCCCcCCH--HHhhhhhhccccceeeecCCCcccccCc---cccCC-CcccEEECCCCceeecCHhHhccc
Confidence            55555555554444421  1222233333    44445554444333   22233 478899999999986555556778


Q ss_pred             hccCceeeCCCC
Q 044082          232 SSNLLALDLNSN  243 (243)
Q Consensus       232 ~~~L~~L~l~~N  243 (243)
                      ++ |++|++++|
T Consensus       224 ~~-L~~L~l~~N  234 (276)
T 2z62_A          224 TS-LQKIWLHTN  234 (276)
T ss_dssp             CS-CCEEECCSS
T ss_pred             cc-ccEEEccCC
Confidence            88 999999887

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.87  E-value=7e-22  Score=159.07  Aligned_cols=179  Identities=22%  Similarity=0.157  Sum_probs=151.5

Q ss_pred             CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCC
Q 044082           50 GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN  129 (243)
Q Consensus        50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~  129 (243)
                      ..++.|++++        |.+++..+..+.++++|++|++++|.++.. .+..+..+++|++|++++|.+.+..+..+..
T Consensus        28 ~~l~~L~ls~--------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~   98 (276)
T 2z62_A           28 FSTKNLDLSF--------NPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSG   98 (276)
T ss_dssp             TTCCEEECTT--------CCCCEECTTTTTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred             CCccEEECCC--------CcccccCHhHhccccCCcEEECCCCcCCcc-CHHHccCCcCCCEEECCCCccCccChhhhcC
Confidence            4689999999        588877777899999999999999999875 5668899999999999999999777788999


Q ss_pred             CCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCC
Q 044082          130 LTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTS  209 (243)
Q Consensus       130 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~  209 (243)
                      +++|++|++++|.++...+..+..+++|++|++++|.+.... ++..+..+++|++|++++|.+++..+  ..+..+ .+
T Consensus        99 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-l~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l-~~  174 (276)
T 2z62_A           99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK-LPEYFSNLTNLEHLDLSSNKIQSIYC--TDLRVL-HQ  174 (276)
T ss_dssp             CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCC-CCGGGGGCTTCCEEECCSSCCCEECG--GGGHHH-HT
T ss_pred             CccccEEECCCCCccccCchhcccCCCCCEEECcCCccceec-CchhhccCCCCCEEECCCCCCCcCCH--HHhhhh-hh
Confidence            999999999999999877767999999999999999998742 12378899999999999999988765  455554 55


Q ss_pred             Cc----EEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082          210 LA----LLDLSSCGLSNSAYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       210 L~----~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N  243 (243)
                      |+    .|++++|.+++ ++.......+ |++|++++|
T Consensus       175 L~~l~l~L~ls~n~l~~-~~~~~~~~~~-L~~L~L~~n  210 (276)
T 2z62_A          175 MPLLNLSLDLSLNPMNF-IQPGAFKEIR-LKELALDTN  210 (276)
T ss_dssp             CTTCCEEEECCSSCCCE-ECTTSSCSCC-EEEEECCSS
T ss_pred             ccccceeeecCCCcccc-cCccccCCCc-ccEEECCCC
Confidence            66    89999999985 4444445556 999999987

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.87  E-value=2.9e-21  Score=162.81  Aligned_cols=104  Identities=15%  Similarity=0.076  Sum_probs=67.7

Q ss_pred             CCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCcccc
Q 044082           66 PNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYV  145 (243)
Q Consensus        66 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~  145 (243)
                      .+|.+.+..+..+.++++|++|++++|.++.. .|..+..+++|++|++++|.+....+..+..+++|++|++++|.++.
T Consensus        77 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~  155 (390)
T 3o6n_A           77 NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER  155 (390)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred             CCCcccccChhhccCCCCcCEEECCCCCCCcC-CHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCc
Confidence            33555555555667777777777777777664 55566677777777777777763322335667777777777777766


Q ss_pred             CCccccCCCCCCCEEEcCCccccCC
Q 044082          146 SKFGWLSHLNKLTQLDLDFVDLSEA  170 (243)
Q Consensus       146 ~~~~~l~~l~~L~~L~l~~n~l~~~  170 (243)
                      ..+..+..+++|++|++++|.+...
T Consensus       156 ~~~~~~~~l~~L~~L~l~~n~l~~~  180 (390)
T 3o6n_A          156 IEDDTFQATTSLQNLQLSSNRLTHV  180 (390)
T ss_dssp             CCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred             cChhhccCCCCCCEEECCCCcCCcc
Confidence            6666666677777777777766554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.87  E-value=2.7e-22  Score=158.25  Aligned_cols=176  Identities=16%  Similarity=0.112  Sum_probs=134.1

Q ss_pred             CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCC-CCCCCcchhhcCCCCCcEEecCC-ccccccCCcCC
Q 044082           50 GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVND-FLGNPIPEFIGFFTKLRFLDLSL-ANFSGRIPYQL  127 (243)
Q Consensus        50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~l  127 (243)
                      ..++.|++++        |.+++..+..+.++++|++|++++|. ++.. .+..+..+++|++|++++ |.+.+..+..+
T Consensus        31 ~~l~~L~l~~--------n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i-~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f  101 (239)
T 2xwt_C           31 PSTQTLKLIE--------THLRTIPSHAFSNLPNISRIYVSIDVTLQQL-ESHSFYNLSKVTHIEIRNTRNLTYIDPDAL  101 (239)
T ss_dssp             TTCCEEEEES--------CCCSEECTTTTTTCTTCCEEEEECCSSCCEE-CTTTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred             CcccEEEEeC--------CcceEECHHHccCCCCCcEEeCCCCCCccee-CHhHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence            4789999999        57776666678889999999999997 7664 445788889999999988 88885555677


Q ss_pred             CCCCCCcEEEccCCccccCCccccCCCCCCC---EEEcCCc-cccCCcchHHHhhcccccc-ccccccccCCCCCCCCcc
Q 044082          128 GNLTNLQSLNLGYNSLYVSKFGWLSHLNKLT---QLDLDFV-DLSEASDWLQVITSLASLR-DLYLASSTLPSINRPSLS  202 (243)
Q Consensus       128 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~---~L~l~~n-~l~~~~~~~~~~~~l~~L~-~L~l~~n~~~~~~~~~~~  202 (243)
                      ..+++|++|++++|.+++ +|. +..+.+|+   +|++++| .+...+.  ..+..+++|+ +|++++|.++.++.   .
T Consensus       102 ~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~--~~~~~l~~L~~~L~l~~n~l~~i~~---~  174 (239)
T 2xwt_C          102 KELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPV--NAFQGLCNETLTLKLYNNGFTSVQG---Y  174 (239)
T ss_dssp             ECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECT--TTTTTTBSSEEEEECCSCCCCEECT---T
T ss_pred             CCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCc--ccccchhcceeEEEcCCCCCcccCH---h
Confidence            888889999999888876 454 77777777   8888888 7877743  2577788888 88888888875443   3


Q ss_pred             cccCCCCCcEEECCCCc-cccccchhHHhh-hccCceeeCCCC
Q 044082          203 SMNSSTSLALLDLSSCG-LSNSAYHWLFKI-SSNLLALDLNSN  243 (243)
Q Consensus       203 ~~~~~~~L~~L~L~~n~-i~~~~~~~l~~l-~~~L~~L~l~~N  243 (243)
                      .... ++|+.|++++|+ +++..+..+..+ ++ |++|++++|
T Consensus       175 ~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~-L~~L~l~~N  215 (239)
T 2xwt_C          175 AFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSG-PSLLDVSQT  215 (239)
T ss_dssp             TTTT-CEEEEEECTTCTTCCEECTTTTTTCSBC-CSEEECTTC
T ss_pred             hcCC-CCCCEEEcCCCCCcccCCHHHhhccccC-CcEEECCCC
Confidence            3344 678888888884 775445567777 77 888888776

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.86  E-value=5.9e-22  Score=173.89  Aligned_cols=190  Identities=23%  Similarity=0.224  Sum_probs=153.1

Q ss_pred             CcccceEEecCC-----------CCceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcC
Q 044082           37 CCKWSGVQCSNR-----------TGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGF  105 (243)
Q Consensus        37 ~~~~~~~~c~~~-----------~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~  105 (243)
                      .|.|.++ |+-.           ...+++|++++        |.+++..|..++++++|++|++++|.++.. .|..+..
T Consensus         3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~--------n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~   72 (549)
T 2z81_A            3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSF--------NKITYIGHGDLRACANLQVLILKSSRINTI-EGDAFYS   72 (549)
T ss_dssp             EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCS--------SCCCEECSSTTSSCTTCCEEECTTSCCCEE-CTTTTTT
T ss_pred             cCCCCce-EECCCCccccccccCCCCccEEECcC--------CccCccChhhhhcCCcccEEECCCCCcCcc-Chhhccc
Confidence            4677776 6422           24799999999        588887788999999999999999999886 6788999


Q ss_pred             CCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccC-CccccCCCCCCCEEEcCCcc-ccCCcchHHHhhccccc
Q 044082          106 FTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVS-KFGWLSHLNKLTQLDLDFVD-LSEASDWLQVITSLASL  183 (243)
Q Consensus       106 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L  183 (243)
                      +++|++|++++|.+.+..+..++.+++|++|++++|.+++. .|..++.+++|++|++++|. +...+.  ..+..+++|
T Consensus        73 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~--~~~~~l~~L  150 (549)
T 2z81_A           73 LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR--IDFAGLTSL  150 (549)
T ss_dssp             CTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT--TTTTTCCEE
T ss_pred             cccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCH--hhhhccccc
Confidence            99999999999999966666689999999999999999863 46778999999999999998 455542  367889999


Q ss_pred             cccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhH-HhhhccCceeeCCCC
Q 044082          184 RDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWL-FKISSNLLALDLNSN  243 (243)
Q Consensus       184 ~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l-~~l~~~L~~L~l~~N  243 (243)
                      ++|++++|.+++..+  ..+..+ ++|+.|+++.|.+. .+|..+ ..+++ |++|++++|
T Consensus       151 ~~L~L~~n~l~~~~~--~~l~~l-~~L~~L~l~~n~~~-~~~~~~~~~l~~-L~~L~L~~n  206 (549)
T 2z81_A          151 NELEIKALSLRNYQS--QSLKSI-RDIHHLTLHLSESA-FLLEIFADILSS-VRYLELRDT  206 (549)
T ss_dssp             EEEEEEETTCCEECT--TTTTTC-SEEEEEEEECSBST-THHHHHHHSTTT-BSEEEEESC
T ss_pred             CeeeccCCcccccCh--hhhhcc-ccCceEecccCccc-ccchhhHhhccc-ccEEEccCC
Confidence            999999999988766  566666 77888888887776 455544 34566 777777765

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.86  E-value=3.8e-21  Score=165.02  Aligned_cols=129  Identities=20%  Similarity=0.213  Sum_probs=88.1

Q ss_pred             CcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhcccccccccc
Q 044082          109 LRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYL  188 (243)
Q Consensus       109 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l  188 (243)
                      |++|++++|.+.+..|..++.+++|++|++++|.+++..+..+..+++|++|++++|.+.+.+.  ..+..+++|++|++
T Consensus       277 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~L  354 (455)
T 3v47_A          277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDS--RMFENLDKLEVLDL  354 (455)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECG--GGGTTCTTCCEEEC
T ss_pred             ceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcCh--hHhcCcccCCEEEC
Confidence            3333333333333345556667777777777777776666677777777777777777766621  36677778888888


Q ss_pred             ccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082          189 ASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       189 ~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N  243 (243)
                      ++|.+++..+  ..+..+ ++|+.|++++|++++..+..+..+++ |++|++++|
T Consensus       355 s~N~l~~~~~--~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~l~~N  405 (455)
T 3v47_A          355 SYNHIRALGD--QSFLGL-PNLKELALDTNQLKSVPDGIFDRLTS-LQKIWLHTN  405 (455)
T ss_dssp             CSSCCCEECT--TTTTTC-TTCCEEECCSSCCSCCCTTTTTTCTT-CCEEECCSS
T ss_pred             CCCcccccCh--hhcccc-ccccEEECCCCccccCCHhHhccCCc-ccEEEccCC
Confidence            8887777666  556666 78888888888887644555677777 888888776

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.86  E-value=2.8e-20  Score=145.83  Aligned_cols=162  Identities=22%  Similarity=0.186  Sum_probs=124.3

Q ss_pred             CCCCCcccceEEecCCCCceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEE
Q 044082           33 GRKDCCKWSGVQCSNRTGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFL  112 (243)
Q Consensus        33 ~~~~~~~~~~~~c~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  112 (243)
                      .+...|.|.++.|...                    .+. .+|..+.  ++|++|++++|.++.. .|..+..+++|++|
T Consensus        14 ~~~~~Cs~~~v~c~~~--------------------~l~-~ip~~~~--~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L   69 (229)
T 3e6j_A           14 PSQCSCSGTTVDCRSK--------------------RHA-SVPAGIP--TNAQILYLHDNQITKL-EPGVFDSLINLKEL   69 (229)
T ss_dssp             CTTCEEETTEEECTTS--------------------CCS-SCCSCCC--TTCSEEECCSSCCCCC-CTTTTTTCTTCCEE
T ss_pred             CCCCEEeCCEeEccCC--------------------CcC-ccCCCCC--CCCCEEEcCCCccCcc-CHHHhhCccCCcEE
Confidence            4778899998888531                    222 2333332  7788888888888886 67788888888888


Q ss_pred             ecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhcccccccccccccc
Q 044082          113 DLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASST  192 (243)
Q Consensus       113 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~  192 (243)
                      ++++|.+....+..+..+++|++|++++|.++...+..+..+++|++|++++|.+..+|.   .+..+++|++|++++|.
T Consensus        70 ~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~---~~~~l~~L~~L~L~~N~  146 (229)
T 3e6j_A           70 YLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPR---GIERLTHLTHLALDQNQ  146 (229)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCT---TGGGCTTCSEEECCSSC
T ss_pred             ECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCc---ccccCCCCCEEECCCCc
Confidence            888888874444557788888888888888887766777888888888888888887765   66788888888888888


Q ss_pred             CCCCCCCCcccccCCCCCcEEECCCCcccccc
Q 044082          193 LPSINRPSLSSMNSSTSLALLDLSSCGLSNSA  224 (243)
Q Consensus       193 ~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~  224 (243)
                      +++..+  ..+..+ ++|+.|++++|.++...
T Consensus       147 l~~~~~--~~~~~l-~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A          147 LKSIPH--GAFDRL-SSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             CCCCCT--TTTTTC-TTCCEEECTTSCBCTTB
T ss_pred             CCccCH--HHHhCC-CCCCEEEeeCCCccCCc
Confidence            887765  455556 88888998888887544

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.86  E-value=5.4e-21  Score=153.70  Aligned_cols=161  Identities=29%  Similarity=0.267  Sum_probs=139.8

Q ss_pred             CCceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCC
Q 044082           49 TGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLG  128 (243)
Q Consensus        49 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~  128 (243)
                      .+.++.|++++        |.+.+ + +.+..+++|++|++++|.++.. .+..+..+++|++|++++|.+.+..+..++
T Consensus        62 l~~L~~L~l~~--------n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  130 (272)
T 3rfs_A           62 LPNVRYLALGG--------NKLHD-I-SALKELTNLTYLILTGNQLQSL-PNGVFDKLTNLKELVLVENQLQSLPDGVFD  130 (272)
T ss_dssp             CTTCCEEECTT--------SCCCC-C-GGGTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred             CCCCcEEECCC--------CCCCC-c-hhhcCCCCCCEEECCCCccCcc-ChhHhcCCcCCCEEECCCCcCCccCHHHhc
Confidence            46799999999        47765 3 4789999999999999999986 666789999999999999999976667789


Q ss_pred             CCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCC
Q 044082          129 NLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSST  208 (243)
Q Consensus       129 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~  208 (243)
                      .+++|++|++++|.+++..+..+..+++|++|++++|.+++.+.  ..+..+++|++|++++|.+++..+  ..+..+ +
T Consensus       131 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l-~  205 (272)
T 3rfs_A          131 KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE--GVFDKLTQLKDLRLYQNQLKSVPD--GVFDRL-T  205 (272)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCSCCCT--TTTTTC-T
T ss_pred             cCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCH--HHhcCCccCCEEECCCCcCCccCH--HHHhCC-c
Confidence            99999999999999998777778999999999999999998853  357889999999999999998877  556667 9


Q ss_pred             CCcEEECCCCccccccc
Q 044082          209 SLALLDLSSCGLSNSAY  225 (243)
Q Consensus       209 ~L~~L~L~~n~i~~~~~  225 (243)
                      +|+.|++++|.+.+..|
T Consensus       206 ~L~~L~l~~N~~~~~~~  222 (272)
T 3rfs_A          206 SLQYIWLHDNPWDCTCP  222 (272)
T ss_dssp             TCCEEECCSSCBCCCTT
T ss_pred             CCCEEEccCCCccccCc
Confidence            99999999998876554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.86  E-value=1.2e-20  Score=151.39  Aligned_cols=190  Identities=26%  Similarity=0.252  Sum_probs=160.7

Q ss_pred             CCCcccceEEecCCCCceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEec
Q 044082           35 KDCCKWSGVQCSNRTGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDL  114 (243)
Q Consensus        35 ~~~~~~~~~~c~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l  114 (243)
                      .+.|.|.|+.|.- ...++.+++++        +.++ .+|..+.  +++++|++++|.++.. .+..+..+++|++|++
T Consensus         2 ~~~C~~~~~~C~c-~~~~~~l~~~~--------~~l~-~ip~~~~--~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l   68 (270)
T 2o6q_A            2 EALCKKDGGVCSC-NNNKNSVDCSS--------KKLT-AIPSNIP--ADTKKLDLQSNKLSSL-PSKAFHRLTKLRLLYL   68 (270)
T ss_dssp             CCCBGGGTCSBEE-ETTTTEEECTT--------SCCS-SCCSCCC--TTCSEEECCSSCCSCC-CTTSSSSCTTCCEEEC
T ss_pred             CccCCCCCCCCEe-CCCCCEEEccC--------CCCC-ccCCCCC--CCCCEEECcCCCCCee-CHHHhcCCCCCCEEEC
Confidence            4789999998853 23567899999        4666 3665443  6799999999999885 5668999999999999


Q ss_pred             CCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCC
Q 044082          115 SLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLP  194 (243)
Q Consensus       115 ~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~  194 (243)
                      ++|.+....+..+..+++|++|++++|.++...+..+..+++|++|++++|.+...+.  ..+..+++|++|++++|.++
T Consensus        69 ~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~Ls~n~l~  146 (270)
T 2o6q_A           69 NDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPP--RVFDSLTKLTYLSLGYNELQ  146 (270)
T ss_dssp             CSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCC
T ss_pred             CCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCH--HHhCcCcCCCEEECCCCcCC
Confidence            9999995555567889999999999999998777778999999999999999999853  36789999999999999999


Q ss_pred             CCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082          195 SINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       195 ~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N  243 (243)
                      +.++  ..+..+ ++|+.|++++|.+++..+..+..+++ |++|++++|
T Consensus       147 ~~~~--~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~N  191 (270)
T 2o6q_A          147 SLPK--GVFDKL-TSLKELRLYNNQLKRVPEGAFDKLTE-LKTLKLDNN  191 (270)
T ss_dssp             CCCT--TTTTTC-TTCCEEECCSSCCSCCCTTTTTTCTT-CCEEECCSS
T ss_pred             ccCH--hHccCC-cccceeEecCCcCcEeChhHhccCCC-cCEEECCCC
Confidence            8776  456667 99999999999999766667888998 999999987

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.85  E-value=1.4e-20  Score=166.97  Aligned_cols=185  Identities=23%  Similarity=0.218  Sum_probs=141.6

Q ss_pred             CceEEEecCCCCC----------------CCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEe
Q 044082           50 GHVIMLNLKYKVD----------------PVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLD  113 (243)
Q Consensus        50 ~~l~~L~l~~~~~----------------~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  113 (243)
                      .+++.|+|++|.+                +++..|.+.+..|..++++++|++|++++|.++.. .+..+..+++|++|+
T Consensus        75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~L~  153 (597)
T 3oja_B           75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLTTLS  153 (597)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEE
T ss_pred             CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCC-CHHHhccCCCCCEEE
Confidence            4678888888776                56667888887788889999999999999999974 445578999999999


Q ss_pred             cCCccccccCCcCCCCCCCCcEEEccCCccccCCcc--------------------------------------------
Q 044082          114 LSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFG--------------------------------------------  149 (243)
Q Consensus       114 l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~--------------------------------------------  149 (243)
                      +++|.+.+..|..++.+++|++|++++|.+++..+.                                            
T Consensus       154 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~  233 (597)
T 3oja_B          154 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE  233 (597)
T ss_dssp             CCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSC
T ss_pred             eeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCC
Confidence            999999977777899999999999999987653222                                            


Q ss_pred             ---------------ccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEE
Q 044082          150 ---------------WLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLD  214 (243)
Q Consensus       150 ---------------~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~  214 (243)
                                     .+..+++|+.|++++|.+.+.+  +..+..+++|+.|++++|.+++++.   ....+ ++|+.|+
T Consensus       234 L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~l~~---~~~~l-~~L~~L~  307 (597)
T 3oja_B          234 LTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIM--YHPFVKMQRLERLYISNNRLVALNL---YGQPI-PTLKVLD  307 (597)
T ss_dssp             CCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEE--SGGGTTCSSCCEEECTTSCCCEEEC---SSSCC-TTCCEEE
T ss_pred             CCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCC--HHHhcCccCCCEEECCCCCCCCCCc---ccccC-CCCcEEE
Confidence                           2344556666666666666551  1366677777777777777766533   33444 8888888


Q ss_pred             CCCCccccccchhHHhhhccCceeeCCCC
Q 044082          215 LSSCGLSNSAYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       215 L~~n~i~~~~~~~l~~l~~~L~~L~l~~N  243 (243)
                      |++|.++ .+|..+..+++ |++|++++|
T Consensus       308 Ls~N~l~-~i~~~~~~l~~-L~~L~L~~N  334 (597)
T 3oja_B          308 LSHNHLL-HVERNQPQFDR-LENLYLDHN  334 (597)
T ss_dssp             CCSSCCC-CCGGGHHHHTT-CSEEECCSS
T ss_pred             CCCCCCC-ccCcccccCCC-CCEEECCCC
Confidence            8888888 67888888888 888888876

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.85  E-value=6.2e-21  Score=163.39  Aligned_cols=181  Identities=23%  Similarity=0.252  Sum_probs=111.3

Q ss_pred             CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCC
Q 044082           50 GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN  129 (243)
Q Consensus        50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~  129 (243)
                      .+++.|+|++        |.+.+..+..+.++++|++|++++|.++.. .+..+..+++|++|++++|.+....+..+..
T Consensus        88 ~~L~~L~Ls~--------n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~  158 (440)
T 3zyj_A           88 RHLEILQLSR--------NHIRTIEIGAFNGLANLNTLELFDNRLTTI-PNGAFVYLSKLKELWLRNNPIESIPSYAFNR  158 (440)
T ss_dssp             SSCCEEECCS--------SCCCEECGGGGTTCSSCCEEECCSSCCSSC-CTTTSCSCSSCCEEECCSCCCCEECTTTTTT
T ss_pred             CCCCEEECCC--------CcCCccChhhccCCccCCEEECCCCcCCee-CHhHhhccccCceeeCCCCcccccCHHHhhh
Confidence            6789999999        477766667788888888888888888764 4556778888888888888777544445666


Q ss_pred             CCCCcEEEccCC-ccccCCccccCCCCCCCEEEcCCccccCCcch--------------------HHHhhcccccccccc
Q 044082          130 LTNLQSLNLGYN-SLYVSKFGWLSHLNKLTQLDLDFVDLSEASDW--------------------LQVITSLASLRDLYL  188 (243)
Q Consensus       130 l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~--------------------~~~~~~l~~L~~L~l  188 (243)
                      +++|++|++++| .+....+..+..+++|++|++++|.+...+.+                    +..+..+++|++|++
T Consensus       159 l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  238 (440)
T 3zyj_A          159 IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWM  238 (440)
T ss_dssp             CTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEEC
Confidence            666666666653 33333333455555555555555555544320                    124444555555555


Q ss_pred             ccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082          189 ASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       189 ~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N  243 (243)
                      ++|.++++.+  ..+..+ ++|+.|+|++|++++..+..+..+++ |++|++++|
T Consensus       239 ~~n~l~~~~~--~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~L~~N  289 (440)
T 3zyj_A          239 IQSQIQVIER--NAFDNL-QSLVEINLAHNNLTLLPHDLFTPLHH-LERIHLHHN  289 (440)
T ss_dssp             TTCCCCEECT--TSSTTC-TTCCEEECTTSCCCCCCTTTTSSCTT-CCEEECCSS
T ss_pred             CCCceeEECh--hhhcCC-CCCCEEECCCCCCCccChhHhccccC-CCEEEcCCC
Confidence            5555554444  334444 66666666666666444445555665 666666655

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.85  E-value=2.6e-21  Score=171.73  Aligned_cols=159  Identities=23%  Similarity=0.214  Sum_probs=73.4

Q ss_pred             hccCCCCcEEEccCCCCCCCCcc-hhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCcccc-CCccccCCCC
Q 044082           78 LLELQHLNYLDLSVNDFLGNPIP-EFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYV-SKFGWLSHLN  155 (243)
Q Consensus        78 ~~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~  155 (243)
                      +..+++|++|++++|.+... .| ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++ ..|..+..++
T Consensus       395 ~~~l~~L~~L~l~~n~l~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  473 (606)
T 3vq2_A          395 FMGLEELQHLDFQHSTLKRV-TEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT  473 (606)
T ss_dssp             CTTCTTCCEEECTTSEEEST-TTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred             ccCCCCCCeeECCCCccCCc-cChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCC
Confidence            33334444444444443332 22 234444444444444444444444444444445555555554443 2344444455


Q ss_pred             CCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccC
Q 044082          156 KLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNL  235 (243)
Q Consensus       156 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L  235 (243)
                      +|++|++++|.+.+.+.  ..+..+++|++|++++|.+++..+  ..+..+ ++|+.|++++|+++ .+|..+..++++|
T Consensus       474 ~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l-~~L~~L~l~~N~l~-~~p~~~~~l~~~L  547 (606)
T 3vq2_A          474 NLTFLDLSKCQLEQISW--GVFDTLHRLQLLNMSHNNLLFLDS--SHYNQL-YSLSTLDCSFNRIE-TSKGILQHFPKSL  547 (606)
T ss_dssp             TCCEEECTTSCCCEECT--TTTTTCTTCCEEECCSSCCSCEEG--GGTTTC-TTCCEEECTTSCCC-CEESCGGGSCTTC
T ss_pred             CCCEEECCCCcCCccCh--hhhcccccCCEEECCCCcCCCcCH--HHccCC-CcCCEEECCCCcCc-ccCHhHhhhcccC
Confidence            55555555555544411  144445555555555555554433  334444 55555555555555 3444444443225


Q ss_pred             ceeeCCCC
Q 044082          236 LALDLNSN  243 (243)
Q Consensus       236 ~~L~l~~N  243 (243)
                      ++|++++|
T Consensus       548 ~~l~l~~N  555 (606)
T 3vq2_A          548 AFFNLTNN  555 (606)
T ss_dssp             CEEECCSC
T ss_pred             cEEEccCC
Confidence            55555544

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.85  E-value=2.9e-20  Score=156.67  Aligned_cols=185  Identities=23%  Similarity=0.218  Sum_probs=130.9

Q ss_pred             CceEEEecCCCCC----------------CCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEe
Q 044082           50 GHVIMLNLKYKVD----------------PVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLD  113 (243)
Q Consensus        50 ~~l~~L~l~~~~~----------------~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  113 (243)
                      .+++.|+++++.+                +++..|.+.+..|..++++++|++|++++|.++.. .+..+..+++|++|+
T Consensus        69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~L~  147 (390)
T 3o6n_A           69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLTTLS  147 (390)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEE
T ss_pred             ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcC-CHHHhcCCCCCcEEE
Confidence            4556666666554                34444677777777889999999999999998873 334468899999999


Q ss_pred             cCCccccccCCcCCCCCCCCcEEEccCCccccCCcc--------------------------------------------
Q 044082          114 LSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFG--------------------------------------------  149 (243)
Q Consensus       114 l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~--------------------------------------------  149 (243)
                      +++|.+.+..+..+..+++|++|++++|.++.....                                            
T Consensus       148 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  227 (390)
T 3o6n_A          148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE  227 (390)
T ss_dssp             CCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSS
T ss_pred             CCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeecccccccc
Confidence            999998876677788888899999888887643221                                            


Q ss_pred             ---------------ccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEE
Q 044082          150 ---------------WLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLD  214 (243)
Q Consensus       150 ---------------~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~  214 (243)
                                     .+..+++|++|++++|.+.+.+  +..+..+++|++|++++|.+++...   ....+ ++|+.|+
T Consensus       228 L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~l-~~L~~L~  301 (390)
T 3o6n_A          228 LTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIM--YHPFVKMQRLERLYISNNRLVALNL---YGQPI-PTLKVLD  301 (390)
T ss_dssp             CCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEE--SGGGTTCSSCCEEECCSSCCCEEEC---SSSCC-TTCCEEE
T ss_pred             ccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcC--hhHccccccCCEEECCCCcCcccCc---ccCCC-CCCCEEE
Confidence                           1233455666666666665551  1256667777777777777665432   33344 7888888


Q ss_pred             CCCCccccccchhHHhhhccCceeeCCCC
Q 044082          215 LSSCGLSNSAYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       215 L~~n~i~~~~~~~l~~l~~~L~~L~l~~N  243 (243)
                      +++|.++ .+|..+..+++ |++|++++|
T Consensus       302 L~~n~l~-~~~~~~~~l~~-L~~L~L~~N  328 (390)
T 3o6n_A          302 LSHNHLL-HVERNQPQFDR-LENLYLDHN  328 (390)
T ss_dssp             CCSSCCC-CCGGGHHHHTT-CSEEECCSS
T ss_pred             CCCCcce-ecCccccccCc-CCEEECCCC
Confidence            8888887 57777888888 888888876

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.85  E-value=5.2e-23  Score=168.67  Aligned_cols=211  Identities=18%  Similarity=0.160  Sum_probs=155.7

Q ss_pred             CCCCCCCCCCCCcccceEEecCCCCceEEEecCCCCC------------CCCCCCCc-ccccchhhc-------cCCCCc
Q 044082           26 SSWGSDEGRKDCCKWSGVQCSNRTGHVIMLNLKYKVD------------PVCPNRPL-RGNINSSLL-------ELQHLN   85 (243)
Q Consensus        26 ~~w~~~~~~~~~~~~~~~~c~~~~~~l~~L~l~~~~~------------~~~~~~~~-~~~~~~~~~-------~l~~L~   85 (243)
                      ..|.   ....|..+..+.......+++.++++++.+            +++..|.+ .+.+|..+.       ++++|+
T Consensus        22 ~~~~---~~~~c~~~~~~~~~~~~~~L~~l~l~~n~l~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~   98 (312)
T 1wwl_A           22 PDWS---SAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQ   98 (312)
T ss_dssp             CCGG---GGGGSSSCSEEEEEEEEEECTTHHHHCCTTCCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCC
T ss_pred             cchH---HHhhhhccccEEEEccCCCceeEeecccccccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCcc
Confidence            4565   344455555543322234455555555443            44444666 345666665       799999


Q ss_pred             EEEccCCCCCCCCcchhh--cCCCCCcEEecCCccccccCCcCCCCC-----CCCcEEEccCCccccCCccccCCCCCCC
Q 044082           86 YLDLSVNDFLGNPIPEFI--GFFTKLRFLDLSLANFSGRIPYQLGNL-----TNLQSLNLGYNSLYVSKFGWLSHLNKLT  158 (243)
Q Consensus        86 ~L~l~~n~l~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~l~~l-----~~L~~L~l~~n~l~~~~~~~l~~l~~L~  158 (243)
                      +|++++|.+++. .|..+  ..+++|++|++++|.+.+. |..++.+     ++|++|++++|.+++..+..++.+++|+
T Consensus        99 ~L~L~~n~l~~~-~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~  176 (312)
T 1wwl_A           99 ELTLENLEVTGT-APPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALS  176 (312)
T ss_dssp             EEEEEEEBCBSC-CCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCC
T ss_pred             EEEccCCcccch-hHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCC
Confidence            999999999976 77776  8999999999999999966 7666665     8999999999999988888899999999


Q ss_pred             EEEcCCccccCCcchHHHh--hccccccccccccccCCCCCCCCccc-ccCCCCCcEEECCCCccccccc-hhHHhhhcc
Q 044082          159 QLDLDFVDLSEASDWLQVI--TSLASLRDLYLASSTLPSINRPSLSS-MNSSTSLALLDLSSCGLSNSAY-HWLFKISSN  234 (243)
Q Consensus       159 ~L~l~~n~l~~~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~~~~~~-~~~~~~L~~L~L~~n~i~~~~~-~~l~~l~~~  234 (243)
                      +|++++|.+.+...++..+  ..+++|++|++++|.+++.......+ ..+ ++|+.|++++|.+++..| ..+..+++ 
T Consensus       177 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~l~~-  254 (312)
T 1wwl_A          177 TLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR-VQLQGLDLSHNSLRDAAGAPSCDWPSQ-  254 (312)
T ss_dssp             EEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTT-CCCSEEECTTSCCCSSCCCSCCCCCTT-
T ss_pred             EEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcC-CCCCEEECCCCcCCcccchhhhhhcCC-
Confidence            9999999976642122344  78899999999999998532200122 244 899999999999997664 44555677 


Q ss_pred             CceeeCCCC
Q 044082          235 LLALDLNSN  243 (243)
Q Consensus       235 L~~L~l~~N  243 (243)
                      |++|++++|
T Consensus       255 L~~L~Ls~N  263 (312)
T 1wwl_A          255 LNSLNLSFT  263 (312)
T ss_dssp             CCEEECTTS
T ss_pred             CCEEECCCC
Confidence            999999987

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.85  E-value=5.1e-21  Score=169.89  Aligned_cols=179  Identities=18%  Similarity=0.111  Sum_probs=147.6

Q ss_pred             CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCC
Q 044082           50 GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN  129 (243)
Q Consensus        50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~  129 (243)
                      ..+++|++++        |.+.+..+..++++++|++|++++|.++.. .|..|..+++|++|++++|.+.+..|..++.
T Consensus        32 ~~l~~L~Ls~--------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~  102 (606)
T 3vq2_A           32 SSTKNIDLSF--------NPLKILKSYSFSNFSELQWLDLSRCEIETI-EDKAWHGLHHLSNLILTGNPIQSFSPGSFSG  102 (606)
T ss_dssp             TTCCEEECTT--------SCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCCCCTTSSTT
T ss_pred             CCcCEEECCC--------CCcCEeChhhccCCccCcEEeCCCCccccc-CHHHhhchhhcCEeECCCCcccccChhhcCC
Confidence            6789999999        588887777899999999999999999885 6788999999999999999999777889999


Q ss_pred             CCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCC
Q 044082          130 LTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTS  209 (243)
Q Consensus       130 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~  209 (243)
                      +++|++|++++|.++...+..++.+++|++|++++|.+.+.. ++..+..+++|++|++++|.+++..+  ..+..+ .+
T Consensus       103 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-lp~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l-~~  178 (606)
T 3vq2_A          103 LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCK-LPAYFSNLTNLVHVDLSYNYIQTITV--NDLQFL-RE  178 (606)
T ss_dssp             CTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCC-CCGGGGTCTTCCEEECCSSCCCEECT--TTTHHH-HH
T ss_pred             cccCCEEEccCCccccccccccCCCCCCCEEeCCCCccccee-chHhHhhcCCCCEEEccCCcceecCh--hhhhhh-hc
Confidence            999999999999998877778999999999999999998632 12388899999999999999988766  444443 33


Q ss_pred             ----CcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082          210 ----LALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       210 ----L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N  243 (243)
                          +..+++++|.+++ ++.......+ |++|++++|
T Consensus       179 L~~~l~~L~l~~n~l~~-~~~~~~~~~~-L~~L~L~~n  214 (606)
T 3vq2_A          179 NPQVNLSLDMSLNPIDF-IQDQAFQGIK-LHELTLRGN  214 (606)
T ss_dssp             CTTCCCEEECTTCCCCE-ECTTTTTTCE-EEEEEEESC
T ss_pred             cccccceeeccCCCcce-eCcccccCce-eeeeeccCC
Confidence                4578888888884 4444444446 888887765

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.85  E-value=6.8e-21  Score=164.56  Aligned_cols=181  Identities=24%  Similarity=0.247  Sum_probs=147.0

Q ss_pred             CCceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCC
Q 044082           49 TGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLG  128 (243)
Q Consensus        49 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~  128 (243)
                      ..+++.|+|++        |.+.+..|..+.++++|++|++++|.++.. .+..+..+++|++|++++|.+.+..+..+.
T Consensus        55 l~~L~~L~L~~--------n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~  125 (477)
T 2id5_A           55 FPHLEELELNE--------NIVSAVEPGAFNNLFNLRTLGLRSNRLKLI-PLGVFTGLSNLTKLDISENKIVILLDYMFQ  125 (477)
T ss_dssp             CTTCCEEECTT--------SCCCEECTTTTTTCTTCCEEECCSSCCCSC-CTTSSTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred             CCCCCEEECCC--------CccCEeChhhhhCCccCCEEECCCCcCCcc-CcccccCCCCCCEEECCCCccccCChhHcc
Confidence            46899999999        588888888999999999999999999875 555688999999999999999977888899


Q ss_pred             CCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccC--
Q 044082          129 NLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNS--  206 (243)
Q Consensus       129 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~--  206 (243)
                      .+++|++|++++|.++...+..+..+++|+.|++++|.+...+.  ..+..+++|+.|++++|.+.+..+  ..+..+  
T Consensus       126 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~l~~l~~L~~L~l~~n~i~~~~~--~~~~~l~~  201 (477)
T 2id5_A          126 DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT--EALSHLHGLIVLRLRHLNINAIRD--YSFKRLYR  201 (477)
T ss_dssp             TCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH--HHHTTCTTCCEEEEESCCCCEECT--TCSCSCTT
T ss_pred             ccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh--hHhcccCCCcEEeCCCCcCcEeCh--hhcccCcc
Confidence            99999999999999988888889999999999999999988853  467888888888888888776544  233332  


Q ss_pred             ---------------------CCCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082          207 ---------------------STSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       207 ---------------------~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N  243 (243)
                                           ..+|+.|++++|.+++..+..+..+++ |++|++++|
T Consensus       202 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~Ls~n  258 (477)
T 2id5_A          202 LKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVY-LRFLNLSYN  258 (477)
T ss_dssp             CCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTT-CCEEECCSS
T ss_pred             cceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccc-cCeeECCCC
Confidence                                 025666666677777433356777888 999988876

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.85  E-value=1.2e-20  Score=167.48  Aligned_cols=169  Identities=24%  Similarity=0.205  Sum_probs=112.3

Q ss_pred             CCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccC-
Q 044082           68 RPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVS-  146 (243)
Q Consensus        68 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-  146 (243)
                      |.+.+..|..+.++++|++|++++|.++....+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++. 
T Consensus       386 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  465 (606)
T 3t6q_A          386 NEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGN  465 (606)
T ss_dssp             CSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGE
T ss_pred             CcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccc
Confidence            4555555666666666666666666665541223366666777777777766655666666677777777777766542 


Q ss_pred             --CccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCcccccc
Q 044082          147 --KFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSA  224 (243)
Q Consensus       147 --~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~  224 (243)
                        .+..+..+++|++|++++|.+.+.+.  ..+..+++|++|++++|.+++..+  ..+..+ +.| .|++++|.+++..
T Consensus       466 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~Ls~N~l~~~~~--~~l~~l-~~L-~L~L~~N~l~~~~  539 (606)
T 3t6q_A          466 IQKTNSLQTLGRLEILVLSFCDLSSIDQ--HAFTSLKMMNHVDLSHNRLTSSSI--EALSHL-KGI-YLNLASNHISIIL  539 (606)
T ss_dssp             ECSSCGGGGCTTCCEEECTTSCCCEECT--TTTTTCTTCCEEECCSSCCCGGGG--GGGTTC-CSC-EEECCSSCCCCCC
T ss_pred             cccchhhccCCCccEEECCCCccCccCh--hhhccccCCCEEECCCCccCcCCh--hHhCcc-ccc-EEECcCCcccccC
Confidence              22446666777777777777766621  256677777777777777776665  555555 777 7777788777766


Q ss_pred             chhHHhhhccCceeeCCCC
Q 044082          225 YHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       225 ~~~l~~l~~~L~~L~l~~N  243 (243)
                      |..+..+++ |++|++++|
T Consensus       540 ~~~~~~l~~-L~~L~l~~N  557 (606)
T 3t6q_A          540 PSLLPILSQ-QRTINLRQN  557 (606)
T ss_dssp             GGGHHHHHT-SSEEECTTC
T ss_pred             HhhcccCCC-CCEEeCCCC
Confidence            777777777 888888776

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.85  E-value=2.3e-20  Score=154.14  Aligned_cols=180  Identities=17%  Similarity=0.206  Sum_probs=127.5

Q ss_pred             CCceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCC--------------------cchhhcCCCC
Q 044082           49 TGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNP--------------------IPEFIGFFTK  108 (243)
Q Consensus        49 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------------------~~~~~~~l~~  108 (243)
                      ..+++.|++++|        .+++..|..++++++|++|++++|.++..+                    .+..+..+++
T Consensus        77 l~~L~~L~L~~n--------~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~  148 (332)
T 2ft3_A           77 LQHLYALVLVNN--------KISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRN  148 (332)
T ss_dssp             CTTCCEEECCSS--------CCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSS
T ss_pred             CCCCcEEECCCC--------ccCccCHhHhhCcCCCCEEECCCCcCCccCccccccCCEEECCCCccCccCHhHhCCCcc
Confidence            367888888884        666666667777777777777777665310                    2233556666


Q ss_pred             CcEEecCCccccc--cCCcCCCCC--------------------CCCcEEEccCCccccCCccccCCCCCCCEEEcCCcc
Q 044082          109 LRFLDLSLANFSG--RIPYQLGNL--------------------TNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVD  166 (243)
Q Consensus       109 L~~L~l~~~~~~~--~~~~~l~~l--------------------~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  166 (243)
                      |++|++++|.+..  ..+..+..+                    ++|++|++++|.++...+..+..+++|++|++++|.
T Consensus       149 L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~  228 (332)
T 2ft3_A          149 MNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ  228 (332)
T ss_dssp             CCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC
T ss_pred             CCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc
Confidence            7777777666642  223333222                    355566666666666556678888999999999999


Q ss_pred             ccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhh------hccCceeeC
Q 044082          167 LSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKI------SSNLLALDL  240 (243)
Q Consensus       167 l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l------~~~L~~L~l  240 (243)
                      +.+.+.  ..+..+++|++|++++|.++.++.   .+..+ ++|+.|++++|.|++..+..+...      .. ++.+++
T Consensus       229 l~~~~~--~~~~~l~~L~~L~L~~N~l~~lp~---~l~~l-~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~-l~~L~l  301 (332)
T 2ft3_A          229 IRMIEN--GSLSFLPTLRELHLDNNKLSRVPA---GLPDL-KLLQVVYLHTNNITKVGVNDFCPVGFGVKRAY-YNGISL  301 (332)
T ss_dssp             CCCCCT--TGGGGCTTCCEEECCSSCCCBCCT---TGGGC-TTCCEEECCSSCCCBCCTTSSSCSSCCSSSCC-BSEEEC
T ss_pred             CCcCCh--hHhhCCCCCCEEECCCCcCeecCh---hhhcC-ccCCEEECCCCCCCccChhHcccccccccccc-ccceEe
Confidence            998842  368889999999999999986543   56777 999999999999996555555443      44 889999


Q ss_pred             CCC
Q 044082          241 NSN  243 (243)
Q Consensus       241 ~~N  243 (243)
                      ++|
T Consensus       302 ~~N  304 (332)
T 2ft3_A          302 FNN  304 (332)
T ss_dssp             CSS
T ss_pred             ecC
Confidence            886

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.85  E-value=8.8e-21  Score=162.97  Aligned_cols=177  Identities=24%  Similarity=0.231  Sum_probs=148.6

Q ss_pred             CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCC
Q 044082           50 GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN  129 (243)
Q Consensus        50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~  129 (243)
                      .+++.|+|++        |.+.+..+..+.++++|++|++++|.++.. .+..+..+++|++|++++|.+....+..+..
T Consensus        99 ~~L~~L~Ls~--------n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  169 (452)
T 3zyi_A           99 HHLEVLQLGR--------NSIRQIEVGAFNGLASLNTLELFDNWLTVI-PSGAFEYLSKLRELWLRNNPIESIPSYAFNR  169 (452)
T ss_dssp             TTCCEEECCS--------SCCCEECTTTTTTCTTCCEEECCSSCCSBC-CTTTSSSCTTCCEEECCSCCCCEECTTTTTT
T ss_pred             CCCCEEECCC--------CccCCcChhhccCcccCCEEECCCCcCCcc-ChhhhcccCCCCEEECCCCCcceeCHhHHhc
Confidence            5788889988        588877778889999999999999998875 5666888999999999999998655667888


Q ss_pred             CCCCcEEEccCC-ccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCC
Q 044082          130 LTNLQSLNLGYN-SLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSST  208 (243)
Q Consensus       130 l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~  208 (243)
                      +++|++|++++| .+....+..+..+++|++|++++|.+.+.+    .+..+++|++|++++|.+++..+  ..+..+ +
T Consensus       170 l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l-~  242 (452)
T 3zyi_A          170 VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP----NLTPLVGLEELEMSGNHFPEIRP--GSFHGL-S  242 (452)
T ss_dssp             CTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC----CCTTCTTCCEEECTTSCCSEECG--GGGTTC-T
T ss_pred             CCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc----cccccccccEEECcCCcCcccCc--ccccCc-c
Confidence            999999999884 455444556888899999999999998876    36678899999999999988777  667777 9


Q ss_pred             CCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082          209 SLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       209 ~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N  243 (243)
                      +|+.|++++|.+++..+..+..+++ |++|++++|
T Consensus       243 ~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~N  276 (452)
T 3zyi_A          243 SLKKLWVMNSQVSLIERNAFDGLAS-LVELNLAHN  276 (452)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTT-CCEEECCSS
T ss_pred             CCCEEEeCCCcCceECHHHhcCCCC-CCEEECCCC
Confidence            9999999999999877888888888 999999887

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.84  E-value=4.2e-21  Score=157.16  Aligned_cols=178  Identities=20%  Similarity=0.116  Sum_probs=133.3

Q ss_pred             ceEEEecCCCCCCCCCCCCcccccchhh--ccCCCCcEEEccCCCCCCCCcc----hhhcCCCCCcEEecCCccccccCC
Q 044082           51 HVIMLNLKYKVDPVCPNRPLRGNINSSL--LELQHLNYLDLSVNDFLGNPIP----EFIGFFTKLRFLDLSLANFSGRIP  124 (243)
Q Consensus        51 ~l~~L~l~~~~~~~~~~~~~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~  124 (243)
                      +++.|++++        |.+.+..|..+  .++++|++|++++|.++.. .+    ..+..+++|++|++++|.+.+..+
T Consensus        92 ~L~~L~l~~--------n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~-~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~  162 (310)
T 4glp_A           92 RLKELTLED--------LKITGTMPPLPLEATGLALSSLRLRNVSWATG-RSWLAELQQWLKPGLKVLSIAQAHSPAFSC  162 (310)
T ss_dssp             CCCEEEEES--------CCCBSCCCCCSSSCCCBCCSSCEEESCCCSST-TSSHHHHHTTBCSCCCEEEEECCSSCCCCT
T ss_pred             ceeEEEeeC--------CEeccchhhhhhhccCCCCCEEEeecccccch-hhhhHHHHhhhccCCCEEEeeCCCcchhhH
Confidence            478888888        58888888877  8899999999999998864 33    344578899999999999987777


Q ss_pred             cCCCCCCCCcEEEccCCccccC--C--ccccCCCCCCCEEEcCCccccCCcchHHH-hhccccccccccccccCCCCCCC
Q 044082          125 YQLGNLTNLQSLNLGYNSLYVS--K--FGWLSHLNKLTQLDLDFVDLSEASDWLQV-ITSLASLRDLYLASSTLPSINRP  199 (243)
Q Consensus       125 ~~l~~l~~L~~L~l~~n~l~~~--~--~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~  199 (243)
                      ..++.+++|++|++++|++.+.  .  +..+..+++|++|++++|.++..+..+.. +..+++|++|++++|.+++..| 
T Consensus       163 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p-  241 (310)
T 4glp_A          163 EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVN-  241 (310)
T ss_dssp             TSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCC-
T ss_pred             HHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccch-
Confidence            7888999999999999987542  1  22346788899999999988766433333 4677889999999998888754 


Q ss_pred             CcccccC--CCCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082          200 SLSSMNS--STSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       200 ~~~~~~~--~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N  243 (243)
                       ..+..+  +++|+.|++++|.|+ .+|..+.  ++ |++|++++|
T Consensus       242 -~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~-L~~L~Ls~N  282 (310)
T 4glp_A          242 -PSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AK-LRVLDLSSN  282 (310)
T ss_dssp             -SCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SC-CSCEECCSC
T ss_pred             -hhHHhccCcCcCCEEECCCCCCC-chhhhhc--CC-CCEEECCCC
Confidence             333333  157888888888887 5666553  44 777777766

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.84  E-value=1.5e-20  Score=169.11  Aligned_cols=177  Identities=25%  Similarity=0.266  Sum_probs=141.1

Q ss_pred             CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCC
Q 044082           50 GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN  129 (243)
Q Consensus        50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~  129 (243)
                      .+++.|++++        |.+.+..+..++++++|++|++++|.++.. .|..+..+++|++|++++|.+.+..+..++.
T Consensus        25 ~~l~~L~Ls~--------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~   95 (680)
T 1ziw_A           25 TNITVLNLTH--------NQLRRLPAANFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELSQLSDKTFAF   95 (680)
T ss_dssp             TTCSEEECCS--------SCCCCCCGGGGGGGTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             CCCcEEECCC--------CCCCCcCHHHHhCCCcCcEEECCCCccCcc-CHHHHhcccCcCEEECCCCccCccChhhhcc
Confidence            5789999999        578877777889999999999999998886 7888889999999999999888544456888


Q ss_pred             CCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCccc--ccCC
Q 044082          130 LTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSS--MNSS  207 (243)
Q Consensus       130 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~--~~~~  207 (243)
                      +++|++|++++|.+++..+..++.+++|++|++++|.+.+.+.  ..+..+++|++|++++|.+++..+  ..+  ... 
T Consensus        96 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~~~-  170 (680)
T 1ziw_A           96 CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKL--GTQVQLENLQELLLSNNKIQALKS--EELDIFAN-  170 (680)
T ss_dssp             CTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCC--CSSSCCTTCCEEECCSSCCCCBCH--HHHGGGTT-
T ss_pred             CCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCc--hhhcccccCCEEEccCCcccccCH--HHhhcccc-
Confidence            9999999999999887777788889999999999998887732  256788899999999998887655  332  234 


Q ss_pred             CCCcEEECCCCccccccchhHHhhhccCceeeCC
Q 044082          208 TSLALLDLSSCGLSNSAYHWLFKISSNLLALDLN  241 (243)
Q Consensus       208 ~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~  241 (243)
                      ++|+.|++++|.+++..|..+..+++ |+.+++.
T Consensus       171 ~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~l~  203 (680)
T 1ziw_A          171 SSLKKLELSSNQIKEFSPGCFHAIGR-LFGLFLN  203 (680)
T ss_dssp             CEESEEECTTCCCCCBCTTGGGGSSE-ECEEECT
T ss_pred             ccccEEECCCCcccccChhhhhhhhh-hhhhhcc
Confidence            78899999999888777766666554 5444443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.84  E-value=1.1e-20  Score=155.75  Aligned_cols=175  Identities=18%  Similarity=0.163  Sum_probs=124.6

Q ss_pred             CCceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchh----------------------hcCC
Q 044082           49 TGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEF----------------------IGFF  106 (243)
Q Consensus        49 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----------------------~~~l  106 (243)
                      ..+++.|++++        |.+.+..|..++++++|++|++++|.++.  +|..                      +..+
T Consensus        75 l~~L~~L~L~~--------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l  144 (330)
T 1xku_A           75 LKNLHTLILIN--------NKISKISPGAFAPLVKLERLYLSKNQLKE--LPEKMPKTLQELRVHENEITKVRKSVFNGL  144 (330)
T ss_dssp             CTTCCEEECCS--------SCCCCBCTTTTTTCTTCCEEECCSSCCSB--CCSSCCTTCCEEECCSSCCCBBCHHHHTTC
T ss_pred             CCCCCEEECCC--------CcCCeeCHHHhcCCCCCCEEECCCCcCCc--cChhhcccccEEECCCCcccccCHhHhcCC
Confidence            36789999999        47777778888888888888888887764  3433                      3444


Q ss_pred             CCCcEEecCCccccc--cCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhcccccc
Q 044082          107 TKLRFLDLSLANFSG--RIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLR  184 (243)
Q Consensus       107 ~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~  184 (243)
                      ++|++|++++|.+..  ..+..+..+++|++|++++|.++. +|..+.  ++|++|++++|.+.+.+  +..+..+++|+
T Consensus       145 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~--~~~~~~l~~L~  219 (330)
T 1xku_A          145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVD--AASLKGLNNLA  219 (330)
T ss_dssp             TTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEEC--TGGGTTCTTCC
T ss_pred             ccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccC--HHHhcCCCCCC
Confidence            444445554444431  233344455555555555555543 232222  56667777777776662  24788899999


Q ss_pred             ccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082          185 DLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       185 ~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N  243 (243)
                      +|++++|.+++..+  ..+..+ ++|+.|++++|.++ .+|..+..+++ |++|++++|
T Consensus       220 ~L~Ls~n~l~~~~~--~~~~~l-~~L~~L~L~~N~l~-~lp~~l~~l~~-L~~L~l~~N  273 (330)
T 1xku_A          220 KLGLSFNSISAVDN--GSLANT-PHLRELHLNNNKLV-KVPGGLADHKY-IQVVYLHNN  273 (330)
T ss_dssp             EEECCSSCCCEECT--TTGGGS-TTCCEEECCSSCCS-SCCTTTTTCSS-CCEEECCSS
T ss_pred             EEECCCCcCceeCh--hhccCC-CCCCEEECCCCcCc-cCChhhccCCC-cCEEECCCC
Confidence            99999999998776  566777 99999999999999 78889999999 999999987

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.84  E-value=1.2e-20  Score=167.60  Aligned_cols=170  Identities=26%  Similarity=0.272  Sum_probs=116.9

Q ss_pred             CCccccc--chhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcC-CCCCCCCcEEEccCCccc
Q 044082           68 RPLRGNI--NSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQ-LGNLTNLQSLNLGYNSLY  144 (243)
Q Consensus        68 ~~~~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~n~l~  144 (243)
                      |.+.+..  +..+.++++|++|++++|.+... .|..+..+++|++|++++|.+.+..+.. +..+++|++|++++|.++
T Consensus       360 n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~  438 (606)
T 3t6q_A          360 DDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL-KTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD  438 (606)
T ss_dssp             SCCCEEEESTTTTTTCTTCCEEECCSCSCEEE-CTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCB
T ss_pred             CccccccCcchhcccCCCCCEEECCCCcCCcC-CHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccC
Confidence            3444433  45566666677777776666654 5666667777777777777776554443 667777777777777777


Q ss_pred             cCCccccCCCCCCCEEEcCCccccCC-cchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccc
Q 044082          145 VSKFGWLSHLNKLTQLDLDFVDLSEA-SDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNS  223 (243)
Q Consensus       145 ~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~  223 (243)
                      +..+..+..+++|++|++++|.+.+. ...+..+..+++|++|++++|.+++..+  ..+..+ ++|+.|++++|++++.
T Consensus       439 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l-~~L~~L~Ls~N~l~~~  515 (606)
T 3t6q_A          439 ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ--HAFTSL-KMMNHVDLSHNRLTSS  515 (606)
T ss_dssp             TTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECT--TTTTTC-TTCCEEECCSSCCCGG
T ss_pred             CcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccCh--hhhccc-cCCCEEECCCCccCcC
Confidence            66666777777777777777777653 1111256777778888888887777666  556666 7888888888888877


Q ss_pred             cchhHHhhhccCceeeCCCC
Q 044082          224 AYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       224 ~~~~l~~l~~~L~~L~l~~N  243 (243)
                      .|..+..++. | +|++++|
T Consensus       516 ~~~~l~~l~~-L-~L~L~~N  533 (606)
T 3t6q_A          516 SIEALSHLKG-I-YLNLASN  533 (606)
T ss_dssp             GGGGGTTCCS-C-EEECCSS
T ss_pred             ChhHhCcccc-c-EEECcCC
Confidence            7777777777 7 8887776

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.84  E-value=3.5e-20  Score=150.38  Aligned_cols=174  Identities=25%  Similarity=0.241  Sum_probs=147.0

Q ss_pred             CCceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCC
Q 044082           49 TGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLG  128 (243)
Q Consensus        49 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~  128 (243)
                      ...++.+++++        +.++ .+|..+.  ++++.|++++|.++.. .+..+..+++|++|++++|.+.+. +.. +
T Consensus         9 l~~l~~l~~~~--------~~l~-~ip~~~~--~~l~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~   74 (290)
T 1p9a_G            9 VASHLEVNCDK--------RNLT-ALPPDLP--KDTTILHLSENLLYTF-SLATLMPYTRLTQLNLDRAELTKL-QVD-G   74 (290)
T ss_dssp             STTCCEEECTT--------SCCS-SCCSCCC--TTCCEEECTTSCCSEE-EGGGGTTCTTCCEEECTTSCCCEE-ECC-S
T ss_pred             cCCccEEECCC--------CCCC-cCCCCCC--CCCCEEEcCCCcCCcc-CHHHhhcCCCCCEEECCCCccCcc-cCC-C
Confidence            45788999999        4666 4555443  6899999999999886 678899999999999999999844 333 7


Q ss_pred             CCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCC
Q 044082          129 NLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSST  208 (243)
Q Consensus       129 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~  208 (243)
                      .+++|++|++++|.++ .+|..+..+++|++|++++|.++..+.  ..+..+++|++|++++|.+++.++  ..+..+ +
T Consensus        75 ~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~--~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l-~  148 (290)
T 1p9a_G           75 TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPL--GALRGLGELQELYLKGNELKTLPP--GLLTPT-P  148 (290)
T ss_dssp             CCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCS--STTTTCTTCCEEECTTSCCCCCCT--TTTTTC-T
T ss_pred             CCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCH--HHHcCCCCCCEEECCCCCCCccCh--hhcccc-c
Confidence            8999999999999998 567778899999999999999998853  378899999999999999998876  455666 9


Q ss_pred             CCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082          209 SLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       209 ~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N  243 (243)
                      +|+.|++++|+++...+..+..+++ |++|++++|
T Consensus       149 ~L~~L~L~~N~l~~l~~~~~~~l~~-L~~L~L~~N  182 (290)
T 1p9a_G          149 KLEKLSLANNNLTELPAGLLNGLEN-LDTLLLQEN  182 (290)
T ss_dssp             TCCEEECTTSCCSCCCTTTTTTCTT-CCEEECCSS
T ss_pred             CCCEEECCCCcCCccCHHHhcCcCC-CCEEECCCC
Confidence            9999999999999644556677888 999999987

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.84  E-value=2.9e-21  Score=160.84  Aligned_cols=178  Identities=22%  Similarity=0.245  Sum_probs=136.5

Q ss_pred             CCceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCc--C
Q 044082           49 TGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPY--Q  126 (243)
Q Consensus        49 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~  126 (243)
                      ..+++.|++++        |.+++..+..++++++|++|++++|.++.. .+..+..+++|++|++++|.+. .+|.  .
T Consensus        75 l~~L~~L~L~~--------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~  144 (353)
T 2z80_A           75 CVNLQALVLTS--------NGINTIEEDSFSSLGSLEHLDLSYNYLSNL-SSSWFKPLSSLTFLNLLGNPYK-TLGETSL  144 (353)
T ss_dssp             CTTCCEEECTT--------SCCCEECTTTTTTCTTCCEEECCSSCCSSC-CHHHHTTCTTCSEEECTTCCCS-SSCSSCS
T ss_pred             CCCCCEEECCC--------CccCccCHhhcCCCCCCCEEECCCCcCCcC-CHhHhCCCccCCEEECCCCCCc-ccCchhh
Confidence            36789999999        588877777889999999999999999874 4455888999999999999888 4444  6


Q ss_pred             CCCCCCCcEEEccCC-ccccCCccccCCCCCCCEEEcCCccccCC-cchHHHhhccccccccccccccCCCCCCCCcccc
Q 044082          127 LGNLTNLQSLNLGYN-SLYVSKFGWLSHLNKLTQLDLDFVDLSEA-SDWLQVITSLASLRDLYLASSTLPSINRPSLSSM  204 (243)
Q Consensus       127 l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~  204 (243)
                      +..+++|++|++++| .+....+..+..+++|++|++++|.+.+. +.   .+..+++|++|++++|.+...+.  ..+.
T Consensus       145 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~l~~l~~L~~L~l~~n~l~~~~~--~~~~  219 (353)
T 2z80_A          145 FSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK---SLKSIQNVSHLILHMKQHILLLE--IFVD  219 (353)
T ss_dssp             CTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT---TTTTCSEEEEEEEECSCSTTHHH--HHHH
T ss_pred             hccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHH---HHhccccCCeecCCCCccccchh--hhhh
Confidence            788899999999888 46666667788888888888888888776 33   67777788888888887754432  2222


Q ss_pred             cCCCCCcEEECCCCcccc-------------------------------ccchhHHhhhccCceeeCCCC
Q 044082          205 NSSTSLALLDLSSCGLSN-------------------------------SAYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       205 ~~~~~L~~L~L~~n~i~~-------------------------------~~~~~l~~l~~~L~~L~l~~N  243 (243)
                      .. ++|+.|++++|.+++                               .+|+++..+++ |++|++++|
T Consensus       220 ~~-~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~-L~~L~Ls~N  287 (353)
T 2z80_A          220 VT-SSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISG-LLELEFSRN  287 (353)
T ss_dssp             HT-TTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTT-CCEEECCSS
T ss_pred             hc-ccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccC-CCEEECCCC
Confidence            34 777777777777664                               24566777888 999999876

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.84  E-value=9.4e-21  Score=168.39  Aligned_cols=161  Identities=21%  Similarity=0.118  Sum_probs=128.2

Q ss_pred             CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCC
Q 044082           50 GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN  129 (243)
Q Consensus        50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~  129 (243)
                      ..+++|||++        |.|++..+..|+++++|++|++++|.++.. .+..|..+++|++|++++|.+++..+..|.+
T Consensus        52 ~~~~~LdLs~--------N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~  122 (635)
T 4g8a_A           52 FSTKNLDLSF--------NPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSG  122 (635)
T ss_dssp             TTCCEEECTT--------SCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECGGGGTT
T ss_pred             cCCCEEEeeC--------CCCCCCCHHHHhCCCCCCEEECCCCcCCCc-ChhHhcCCCCCCEEEccCCcCCCCCHHHhcC
Confidence            4689999999        588876677899999999999999998875 5667889999999999999998555567888


Q ss_pred             CCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccC---
Q 044082          130 LTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNS---  206 (243)
Q Consensus       130 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~---  206 (243)
                      +++|++|++++|.+++..+..++.+++|++|++++|.+...+. +..+..+++|++|++++|++++..+  ..+..+   
T Consensus       123 L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~--~~l~~L~~l  199 (635)
T 4g8a_A          123 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL-PEYFSNLTNLEHLDLSSNKIQSIYC--TDLRVLHQM  199 (635)
T ss_dssp             CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCC-CGGGGGCTTCCEEECCSSCCCEECG--GGGHHHHTC
T ss_pred             CCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCC-chhhccchhhhhhcccCcccccccc--ccccchhhh
Confidence            9999999999999988777778899999999999999877531 2377888899999999999887765  343322   


Q ss_pred             CCCCcEEECCCCcccc
Q 044082          207 STSLALLDLSSCGLSN  222 (243)
Q Consensus       207 ~~~L~~L~L~~n~i~~  222 (243)
                      -.....++++.|.++.
T Consensus       200 ~~~~~~~~ls~n~l~~  215 (635)
T 4g8a_A          200 PLLNLSLDLSLNPMNF  215 (635)
T ss_dssp             TTCCCEEECTTCCCCE
T ss_pred             hhhhhhhhcccCcccc
Confidence            1234467788887764

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.83  E-value=2.2e-21  Score=173.33  Aligned_cols=176  Identities=15%  Similarity=0.210  Sum_probs=96.1

Q ss_pred             CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCC-CCC-CCcchhhcCC------CCCcEEecCCccccc
Q 044082           50 GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVND-FLG-NPIPEFIGFF------TKLRFLDLSLANFSG  121 (243)
Q Consensus        50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~-~~~~~~~~~l------~~L~~L~l~~~~~~~  121 (243)
                      .+++.|++++|        .+.+.+|..++++++|++|++++|. +++ . +|..++.+      ++|++|++++|.+. 
T Consensus       249 ~~L~~L~L~~n--------~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~-lp~~~~~L~~~~~l~~L~~L~L~~n~l~-  318 (636)
T 4eco_A          249 KDLTDVEVYNC--------PNLTKLPTFLKALPEMQLINVACNRGISGEQ-LKDDWQALADAPVGEKIQIIYIGYNNLK-  318 (636)
T ss_dssp             TTCCEEEEECC--------TTCSSCCTTTTTCSSCCEEECTTCTTSCHHH-HHHHHHHHHHSGGGGTCCEEECCSSCCS-
T ss_pred             CCCCEEEecCC--------cCCccChHHHhcCCCCCEEECcCCCCCcccc-chHHHHhhhccccCCCCCEEECCCCcCC-
Confidence            46777777774        5555555555555555555555554 443 3 44444443      45555555555554 


Q ss_pred             cCCc--CCCCCCCCcEEEccCCccccCC----------------------ccccCCCCC-CCEEEcCCccccCCcchHHH
Q 044082          122 RIPY--QLGNLTNLQSLNLGYNSLYVSK----------------------FGWLSHLNK-LTQLDLDFVDLSEASDWLQV  176 (243)
Q Consensus       122 ~~~~--~l~~l~~L~~L~l~~n~l~~~~----------------------~~~l~~l~~-L~~L~l~~n~l~~~~~~~~~  176 (243)
                      .+|.  .++.+++|++|++++|.+++.+                      |..+..+++ |++|++++|.+...|.   .
T Consensus       319 ~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~---~  395 (636)
T 4eco_A          319 TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPN---I  395 (636)
T ss_dssp             SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCS---C
T ss_pred             ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccch---h
Confidence            4444  4444555555555555444333                      444455555 5555555555554433   3


Q ss_pred             hhcc--ccccccccccccCCCCCCCCcccc-------cCCCCCcEEECCCCccccccchhHH-hhhccCceeeCCCC
Q 044082          177 ITSL--ASLRDLYLASSTLPSINRPSLSSM-------NSSTSLALLDLSSCGLSNSAYHWLF-KISSNLLALDLNSN  243 (243)
Q Consensus       177 ~~~l--~~L~~L~l~~n~~~~~~~~~~~~~-------~~~~~L~~L~L~~n~i~~~~~~~l~-~l~~~L~~L~l~~N  243 (243)
                      +..+  ++|++|++++|.+.+..+  ..+.       .. ++|+.|++++|.++ .+|..+. .+++ |++|++++|
T Consensus       396 ~~~~~l~~L~~L~Ls~N~l~~~~p--~~l~~~~~~~~~~-~~L~~L~Ls~N~l~-~lp~~~~~~l~~-L~~L~Ls~N  467 (636)
T 4eco_A          396 FDAKSVSVMSAIDFSYNEIGSVDG--KNFDPLDPTPFKG-INVSSINLSNNQIS-KFPKELFSTGSP-LSSINLMGN  467 (636)
T ss_dssp             CCTTCSSCEEEEECCSSCTTTTTT--CSSCTTCSSCCCC-CCEEEEECCSSCCC-SCCTHHHHTTCC-CSEEECCSS
T ss_pred             hhhcccCccCEEECcCCcCCCcch--hhhcccccccccC-CCCCEEECcCCccC-cCCHHHHccCCC-CCEEECCCC
Confidence            3322  255666666666555444  3333       33 57777777777777 4555444 3666 888888776

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.82  E-value=2.3e-20  Score=164.37  Aligned_cols=177  Identities=23%  Similarity=0.234  Sum_probs=146.4

Q ss_pred             CceEEEecCCCCCCCCCCCCccccc--chhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCC-cC
Q 044082           50 GHVIMLNLKYKVDPVCPNRPLRGNI--NSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIP-YQ  126 (243)
Q Consensus        50 ~~l~~L~l~~~~~~~~~~~~~~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~  126 (243)
                      +.++.|++++        |.+.+..  +..+..+++|++|++++|.+..  ++..+..+++|++|++++|.+.+..+ ..
T Consensus       347 ~~L~~L~l~~--------n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  416 (570)
T 2z63_A          347 PSLEFLDLSR--------NGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT--MSSNFLGLEQLEHLDFQHSNLKQMSEFSV  416 (570)
T ss_dssp             TTCCEEECCS--------SCCBEEEEEEHHHHTCSCCCEEECCSCSEEE--EEEEEETCTTCCEEECTTSEEESCTTSCT
T ss_pred             CCCCEEeCcC--------CccCccccccccccccCccCEEECCCCcccc--ccccccccCCCCEEEccCCccccccchhh
Confidence            4566666666        4666543  6778889999999999998877  45558899999999999999886655 45


Q ss_pred             CCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccC--CcchHHHhhccccccccccccccCCCCCCCCcccc
Q 044082          127 LGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSE--ASDWLQVITSLASLRDLYLASSTLPSINRPSLSSM  204 (243)
Q Consensus       127 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~  204 (243)
                      +..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+  .|.   .+..+++|++|++++|.+++..+  ..+.
T Consensus       417 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~---~~~~l~~L~~L~l~~n~l~~~~~--~~~~  491 (570)
T 2z63_A          417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD---IFTELRNLTFLDLSQCQLEQLSP--TAFN  491 (570)
T ss_dssp             TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS---CCTTCTTCCEEECTTSCCCEECT--TTTT
T ss_pred             hhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchh---hhhcccCCCEEECCCCccccCCh--hhhh
Confidence            7889999999999999988888888899999999999999873  344   77888999999999999988766  5667


Q ss_pred             cCCCCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082          205 NSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       205 ~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N  243 (243)
                      .+ ++|+.|++++|.+++..+..+..+++ |++|++++|
T Consensus       492 ~l-~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~N  528 (570)
T 2z63_A          492 SL-SSLQVLNMASNQLKSVPDGIFDRLTS-LQKIWLHTN  528 (570)
T ss_dssp             TC-TTCCEEECCSSCCSCCCTTTTTTCTT-CCEEECCSS
T ss_pred             cc-cCCCEEeCCCCcCCCCCHHHhhcccC-CcEEEecCC
Confidence            77 99999999999999777777888888 999999887

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.82  E-value=6.9e-21  Score=156.37  Aligned_cols=174  Identities=20%  Similarity=0.169  Sum_probs=86.6

Q ss_pred             ceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCc-----
Q 044082           51 HVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPY-----  125 (243)
Q Consensus        51 ~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-----  125 (243)
                      +++.|++++        |.+.+..|..+.++++|++|++++|.+++.  ++ +..+++|++|++++|.+.+..+.     
T Consensus        35 ~L~~L~L~~--------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~-~~~l~~L~~L~Ls~n~l~~l~~~~~L~~  103 (317)
T 3o53_A           35 NVKELDLSG--------NPLSQISAADLAPFTKLELLNLSSNVLYET--LD-LESLSTLRTLDLNNNYVQELLVGPSIET  103 (317)
T ss_dssp             GCSEEECTT--------SCCCCCCHHHHTTCTTCCEEECTTSCCEEE--EE-ETTCTTCCEEECCSSEEEEEEECTTCCE
T ss_pred             CCCEEECcC--------CccCcCCHHHhhCCCcCCEEECCCCcCCcc--hh-hhhcCCCCEEECcCCccccccCCCCcCE
Confidence            566666666        355555555666666666666666666542  22 55556666666655554421100     


Q ss_pred             -----------CCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCC
Q 044082          126 -----------QLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLP  194 (243)
Q Consensus       126 -----------~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~  194 (243)
                                 ....+++|++|++++|.++...+..+..+++|++|++++|.+.+.+. ......+++|++|++++|.++
T Consensus       104 L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~~l~~L~~L~L~~N~l~  182 (317)
T 3o53_A          104 LHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF-AELAASSDTLEHLNLQYNFIY  182 (317)
T ss_dssp             EECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG-GGGGGGTTTCCEEECTTSCCC
T ss_pred             EECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH-HHHhhccCcCCEEECCCCcCc
Confidence                       01123445555566665555444455555666666666666655421 011234455555555555554


Q ss_pred             CCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082          195 SINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       195 ~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N  243 (243)
                      +...    ...+ ++|+.|++++|.+++ +|..+..+++ |++|++++|
T Consensus       183 ~~~~----~~~l-~~L~~L~Ls~N~l~~-l~~~~~~l~~-L~~L~L~~N  224 (317)
T 3o53_A          183 DVKG----QVVF-AKLKTLDLSSNKLAF-MGPEFQSAAG-VTWISLRNN  224 (317)
T ss_dssp             EEEC----CCCC-TTCCEEECCSSCCCE-ECGGGGGGTT-CSEEECTTS
T ss_pred             cccc----cccc-ccCCEEECCCCcCCc-chhhhcccCc-ccEEECcCC
Confidence            4321    1112 445555555555542 3333444444 444444443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.82  E-value=1.1e-20  Score=163.85  Aligned_cols=173  Identities=20%  Similarity=0.171  Sum_probs=105.0

Q ss_pred             ceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCc-----
Q 044082           51 HVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPY-----  125 (243)
Q Consensus        51 ~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-----  125 (243)
                      +++.|+|++        |.+.+..|..++++++|++|++++|.+++. .|  +..+++|++|++++|.+.+..+.     
T Consensus        35 ~L~~L~Ls~--------n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~  103 (487)
T 3oja_A           35 NVKELDLSG--------NPLSQISAADLAPFTKLELLNLSSNVLYET-LD--LESLSTLRTLDLNNNYVQELLVGPSIET  103 (487)
T ss_dssp             GCCEEECCS--------SCCCCCCGGGGTTCTTCCEEECTTSCCEEE-EE--CTTCTTCCEEECCSSEEEEEEECTTCCE
T ss_pred             CccEEEeeC--------CcCCCCCHHHHhCCCCCCEEEeeCCCCCCC-cc--cccCCCCCEEEecCCcCCCCCCCCCcCE
Confidence            677888888        466766666777777777777777777653 33  66677777777766665522110     


Q ss_pred             -----------CCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHh-hccccccccccccccC
Q 044082          126 -----------QLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVI-TSLASLRDLYLASSTL  193 (243)
Q Consensus       126 -----------~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~l~~L~~L~l~~n~~  193 (243)
                                 ....+++|++|++++|.+++..|..++.+++|++|++++|.+.+.+.  ..+ ..+++|+.|++++|.+
T Consensus       104 L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--~~l~~~l~~L~~L~Ls~N~l  181 (487)
T 3oja_A          104 LHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF--AELAASSDTLEHLNLQYNFI  181 (487)
T ss_dssp             EECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEG--GGGGGGTTTCCEEECTTSCC
T ss_pred             EECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcCh--HHHhhhCCcccEEecCCCcc
Confidence                       01124566677777777766666666667777777777777766521  133 2556666666666666


Q ss_pred             CCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082          194 PSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       194 ~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N  243 (243)
                      ++..+    ...+ ++|+.|++++|.+++ +|..+..+++ |+.|++++|
T Consensus       182 ~~~~~----~~~l-~~L~~L~Ls~N~l~~-~~~~~~~l~~-L~~L~Ls~N  224 (487)
T 3oja_A          182 YDVKG----QVVF-AKLKTLDLSSNKLAF-MGPEFQSAAG-VTWISLRNN  224 (487)
T ss_dssp             CEEEC----CCCC-TTCCEEECCSSCCCE-ECGGGGGGTT-CSEEECTTS
T ss_pred             ccccc----cccC-CCCCEEECCCCCCCC-CCHhHcCCCC-ccEEEecCC
Confidence            65432    2223 566666666666663 3334555555 666666554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.82  E-value=1.6e-19  Score=147.61  Aligned_cols=165  Identities=23%  Similarity=0.297  Sum_probs=123.4

Q ss_pred             CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCC
Q 044082           50 GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN  129 (243)
Q Consensus        50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~  129 (243)
                      .+++.|++++        |.+.+..+  +..+++|++|++++|.++.  ++ .+..+++|++|++++|.+.+ ++. +..
T Consensus        63 ~~L~~L~L~~--------n~i~~~~~--~~~l~~L~~L~L~~n~l~~--~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~  127 (308)
T 1h6u_A           63 NNLIGLELKD--------NQITDLAP--LKNLTKITELELSGNPLKN--VS-AIAGLQSIKTLDLTSTQITD-VTP-LAG  127 (308)
T ss_dssp             TTCCEEECCS--------SCCCCCGG--GTTCCSCCEEECCSCCCSC--CG-GGTTCTTCCEEECTTSCCCC-CGG-GTT
T ss_pred             CCCCEEEccC--------CcCCCChh--HccCCCCCEEEccCCcCCC--ch-hhcCCCCCCEEECCCCCCCC-chh-hcC
Confidence            5677888887        46664333  7888888888888888776  33 57788888888888888874 333 778


Q ss_pred             CCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCC
Q 044082          130 LTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTS  209 (243)
Q Consensus       130 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~  209 (243)
                      +++|++|++++|.+++..+  +..+++|++|++++|.+.+.+    .+..+++|++|++++|.+++..    .+..+ ++
T Consensus       128 l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~l~~n~l~~~~----~l~~l-~~  196 (308)
T 1h6u_A          128 LSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLT----PLANLSKLTTLKADDNKISDIS----PLASL-PN  196 (308)
T ss_dssp             CTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG----GGTTCTTCCEEECCSSCCCCCG----GGGGC-TT
T ss_pred             CCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCCh----hhcCCCCCCEEECCCCccCcCh----hhcCC-CC
Confidence            8888888888888876543  777888888888888887764    2677888888888888887653    24555 88


Q ss_pred             CcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082          210 LALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       210 L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N  243 (243)
                      |+.|++++|.+++..  .+..+++ |++|++++|
T Consensus       197 L~~L~L~~N~l~~~~--~l~~l~~-L~~L~l~~N  227 (308)
T 1h6u_A          197 LIEVHLKNNQISDVS--PLANTSN-LFIVTLTNQ  227 (308)
T ss_dssp             CCEEECTTSCCCBCG--GGTTCTT-CCEEEEEEE
T ss_pred             CCEEEccCCccCccc--cccCCCC-CCEEEccCC
Confidence            888888888888533  2677777 888888765

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.82  E-value=2.3e-19  Score=161.27  Aligned_cols=180  Identities=24%  Similarity=0.245  Sum_probs=124.5

Q ss_pred             CceEEEecCCCCCCCCCCCCcccccc-hhhccCCCCcEEEccCCCCCCC-------------------------Ccchhh
Q 044082           50 GHVIMLNLKYKVDPVCPNRPLRGNIN-SSLLELQHLNYLDLSVNDFLGN-------------------------PIPEFI  103 (243)
Q Consensus        50 ~~l~~L~l~~~~~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~-------------------------~~~~~~  103 (243)
                      .+++.|++++|        .+.+.+| ..+.++++|++|++++|.+...                         ..|..+
T Consensus       405 ~~L~~L~L~~N--------~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~  476 (680)
T 1ziw_A          405 GHLEVLDLGLN--------EIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF  476 (680)
T ss_dssp             TTCCEEECCSS--------CCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTT
T ss_pred             CCCCEEeCCCC--------cCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccc
Confidence            57788888884        4444443 3444555555555555443321                         156667


Q ss_pred             cCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCc--------cccCCCCCCCEEEcCCccccCCcchHH
Q 044082          104 GFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKF--------GWLSHLNKLTQLDLDFVDLSEASDWLQ  175 (243)
Q Consensus       104 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~--------~~l~~l~~L~~L~l~~n~l~~~~~~~~  175 (243)
                      ..+++|++|++++|.+.+..+..+..+++|++|++++|.++...+        ..+..+++|++|++++|.+...+.  .
T Consensus       477 ~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~--~  554 (680)
T 1ziw_A          477 QPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV--E  554 (680)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCT--T
T ss_pred             ccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCH--H
Confidence            777778888888777775555567777788888888887765321        225677788888888888877653  3


Q ss_pred             HhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHH-hhhccCceeeCCCC
Q 044082          176 VITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLF-KISSNLLALDLNSN  243 (243)
Q Consensus       176 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~-~l~~~L~~L~l~~N  243 (243)
                      .+..+++|++|++++|+++++++  ..+..+ ++|+.|++++|++++..+..+. .+++ |+++++++|
T Consensus       555 ~~~~l~~L~~L~Ls~N~l~~l~~--~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~~~~~-L~~l~l~~N  619 (680)
T 1ziw_A          555 VFKDLFELKIIDLGLNNLNTLPA--SVFNNQ-VSLKSLNLQKNLITSVEKKVFGPAFRN-LTELDMRFN  619 (680)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCT--TTTTTC-TTCCEEECTTSCCCBCCHHHHHHHHTT-CSEEECTTC
T ss_pred             HcccccCcceeECCCCCCCcCCH--hHhCCC-CCCCEEECCCCcCCccChhHhcccccc-cCEEEccCC
Confidence            57788888888888888887766  445556 8888999998988876666666 6777 888888876

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.82  E-value=1.4e-19  Score=140.94  Aligned_cols=154  Identities=20%  Similarity=0.168  Sum_probs=132.4

Q ss_pred             EEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCC
Q 044082           53 IMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTN  132 (243)
Q Consensus        53 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~  132 (243)
                      +.++.++        ++++ .+|..+.  ++++.|++++|.++.. .+..+..+++|++|++++|.+.+..|..+..+++
T Consensus        14 ~~v~c~~--------~~l~-~iP~~l~--~~l~~L~l~~n~i~~i-~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~   81 (220)
T 2v9t_B           14 NIVDCRG--------KGLT-EIPTNLP--ETITEIRLEQNTIKVI-PPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRS   81 (220)
T ss_dssp             TEEECTT--------SCCS-SCCSSCC--TTCCEEECCSSCCCEE-CTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSS
T ss_pred             CEEEcCC--------CCcC-cCCCccC--cCCCEEECCCCcCCCc-CHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcC
Confidence            3588888        4655 3555444  6899999999999885 5668899999999999999999888889999999


Q ss_pred             CcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcE
Q 044082          133 LQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLAL  212 (243)
Q Consensus       133 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~  212 (243)
                      |++|++++|.++...+..+..+++|++|++++|.+...+.  ..+..+++|++|++++|.++++.+  ..+..+ ++|+.
T Consensus        82 L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l-~~L~~  156 (220)
T 2v9t_B           82 LNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRV--DAFQDLHNLNLLSLYDNKLQTIAK--GTFSPL-RAIQT  156 (220)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCSCCCT--TTTTTC-TTCCE
T ss_pred             CCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCH--HHcCCCCCCCEEECCCCcCCEECH--HHHhCC-CCCCE
Confidence            9999999999997766778899999999999999999832  378899999999999999998877  556666 99999


Q ss_pred             EECCCCccccc
Q 044082          213 LDLSSCGLSNS  223 (243)
Q Consensus       213 L~L~~n~i~~~  223 (243)
                      |++++|.+.-.
T Consensus       157 L~L~~N~~~c~  167 (220)
T 2v9t_B          157 MHLAQNPFICD  167 (220)
T ss_dssp             EECCSSCEECS
T ss_pred             EEeCCCCcCCC
Confidence            99999999753

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.82  E-value=5.3e-20  Score=162.04  Aligned_cols=179  Identities=22%  Similarity=0.144  Sum_probs=151.7

Q ss_pred             CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCC
Q 044082           50 GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN  129 (243)
Q Consensus        50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~  129 (243)
                      ..++.||+++        |.+++..+..+.++++|++|++++|.++.. .+..+..+++|++|++++|.+.+..|..++.
T Consensus        28 ~~l~~L~Ls~--------n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~   98 (570)
T 2z63_A           28 FSTKNLDLSF--------NPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSG   98 (570)
T ss_dssp             SSCCEEECCS--------CCCCEECTTTTTTCSSCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred             ccccEEEccC--------CccCccChhHhhCCCCceEEECCCCcCCcc-CcccccCchhCCEEeCcCCcCCccCHhhhcC
Confidence            5789999999        588887778899999999999999999885 6778999999999999999999777788999


Q ss_pred             CCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCC
Q 044082          130 LTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTS  209 (243)
Q Consensus       130 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~  209 (243)
                      +++|++|++++|.++...+..++.+++|++|++++|.+.... ++..+..+++|++|++++|.+++..+  ..+..+ .+
T Consensus        99 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~-lp~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l-~~  174 (570)
T 2z63_A           99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK-LPEYFSNLTNLEHLDLSSNKIQSIYC--TDLRVL-HQ  174 (570)
T ss_dssp             CTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCC-CCGGGGGCTTCCEEECTTSCCCEECG--GGGHHH-HT
T ss_pred             ccccccccccccccccCCCccccccccccEEecCCCccceec-ChhhhcccCCCCEEeCcCCccceecH--HHccch-hc
Confidence            999999999999998776667899999999999999998742 12378999999999999999988766  556666 77


Q ss_pred             C----cEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082          210 L----ALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       210 L----~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N  243 (243)
                      |    +.+++++|.+++..+..+... + |++|++++|
T Consensus       175 L~~~~~~L~l~~n~l~~~~~~~~~~~-~-L~~L~l~~n  210 (570)
T 2z63_A          175 MPLLNLSLDLSLNPMNFIQPGAFKEI-R-LHKLTLRNN  210 (570)
T ss_dssp             CTTCCCEEECTTCCCCEECTTTTTTC-E-EEEEEEESC
T ss_pred             cchhhhhcccCCCCceecCHHHhccC-c-ceeEecccc
Confidence            7    899999999987666655544 5 888887764

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.81  E-value=7.4e-19  Score=143.70  Aligned_cols=165  Identities=20%  Similarity=0.271  Sum_probs=140.8

Q ss_pred             CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCC
Q 044082           50 GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN  129 (243)
Q Consensus        50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~  129 (243)
                      .+++.|+++++        .+.. ++ .+..+++|++|++++|.++.  ++. +..+++|++|++++|.+.+ ++ .+..
T Consensus        41 ~~L~~L~l~~~--------~i~~-l~-~~~~l~~L~~L~L~~n~i~~--~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~  105 (308)
T 1h6u_A           41 DGITTLSAFGT--------GVTT-IE-GVQYLNNLIGLELKDNQITD--LAP-LKNLTKITELELSGNPLKN-VS-AIAG  105 (308)
T ss_dssp             HTCCEEECTTS--------CCCC-CT-TGGGCTTCCEEECCSSCCCC--CGG-GTTCCSCCEEECCSCCCSC-CG-GGTT
T ss_pred             CCcCEEEeeCC--------CccC-ch-hhhccCCCCEEEccCCcCCC--Chh-HccCCCCCEEEccCCcCCC-ch-hhcC
Confidence            47899999994        6554 44 68899999999999999988  455 8999999999999999984 44 5889


Q ss_pred             CCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCC
Q 044082          130 LTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTS  209 (243)
Q Consensus       130 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~  209 (243)
                      +++|++|++++|.++.. + .+..+++|++|++++|.+.+.+    .+..+++|++|++++|.+++..    .+..+ ++
T Consensus       106 l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~l~~n~l~~~~----~l~~l-~~  174 (308)
T 1h6u_A          106 LQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNIS----PLAGLTNLQYLSIGNAQVSDLT----PLANL-SK  174 (308)
T ss_dssp             CTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCG----GGGGCTTCCEEECCSSCCCCCG----GGTTC-TT
T ss_pred             CCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCc----cccCCCCccEEEccCCcCCCCh----hhcCC-CC
Confidence            99999999999999864 3 3889999999999999999885    3778899999999999998753    35666 99


Q ss_pred             CcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082          210 LALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       210 L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N  243 (243)
                      |+.|++++|.+++ ++. +..+++ |++|++++|
T Consensus       175 L~~L~l~~n~l~~-~~~-l~~l~~-L~~L~L~~N  205 (308)
T 1h6u_A          175 LTTLKADDNKISD-ISP-LASLPN-LIEVHLKNN  205 (308)
T ss_dssp             CCEEECCSSCCCC-CGG-GGGCTT-CCEEECTTS
T ss_pred             CCEEECCCCccCc-Chh-hcCCCC-CCEEEccCC
Confidence            9999999999985 443 788888 999999987

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.81  E-value=5.4e-20  Score=169.28  Aligned_cols=176  Identities=21%  Similarity=0.186  Sum_probs=127.1

Q ss_pred             CcccceEEecCCCCceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCc-chhhcCCCCCcEEecC
Q 044082           37 CCKWSGVQCSNRTGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPI-PEFIGFFTKLRFLDLS  115 (243)
Q Consensus        37 ~~~~~~~~c~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~l~  115 (243)
                      .+.|..|.+  ....+++|||++        |.+++..+..++++++|++|++++|..... + |..+..+++|++|+++
T Consensus        13 ~~~L~~vP~--lp~~l~~LdLs~--------N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~-i~~~~f~~L~~L~~L~Ls   81 (844)
T 3j0a_A           13 FCNLTQVPQ--VLNTTERLLLSF--------NYIRTVTASSFPFLEQLQLLELGSQYTPLT-IDKEAFRNLPNLRILDLG   81 (844)
T ss_dssp             CCCSSCCCS--SCTTCCEEEEES--------CCCCEECSSSCSSCCSCSEEEECTTCCCCE-ECTTTTSSCTTCCEEECT
T ss_pred             CCCCCCCCC--CCCCcCEEECCC--------CcCCccChhHCcccccCeEEeCCCCCCccc-cCHHHhcCCCCCCEEECC
Confidence            345666655  457899999999        577777777888888888888888865544 4 6778888888888888


Q ss_pred             CccccccCCcCCCCCCCCcEEEccCCccccCCccc--cCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccC
Q 044082          116 LANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGW--LSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTL  193 (243)
Q Consensus       116 ~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~  193 (243)
                      +|.+.+..|..++.+++|++|++++|.+++..+..  +..+++|++|++++|.+.+.+. +..+..+++|++|++++|.+
T Consensus        82 ~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~-~~~~~~L~~L~~L~Ls~N~i  160 (844)
T 3j0a_A           82 SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL-HPSFGKLNSLKSIDFSSNQI  160 (844)
T ss_dssp             TCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCC-CGGGGTCSSCCEEEEESSCC
T ss_pred             CCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccccc-chhHhhCCCCCEEECCCCcC
Confidence            88888777888888888888888888887655543  7788888888888888877631 13677888888888888887


Q ss_pred             CCCCCCCcccccCC-CCCcEEECCCCccccccch
Q 044082          194 PSINRPSLSSMNSS-TSLALLDLSSCGLSNSAYH  226 (243)
Q Consensus       194 ~~~~~~~~~~~~~~-~~L~~L~L~~n~i~~~~~~  226 (243)
                      ++..+  ..+..+. ++|+.|+++.|.+++..|.
T Consensus       161 ~~~~~--~~l~~l~~~~L~~L~L~~n~l~~~~~~  192 (844)
T 3j0a_A          161 FLVCE--HELEPLQGKTLSFFSLAANSLYSRVSV  192 (844)
T ss_dssp             CCCCS--GGGHHHHHCSSCCCEECCSBSCCCCCC
T ss_pred             CeeCH--HHcccccCCccceEECCCCcccccccc
Confidence            76655  3332210 4556666666665554443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.81  E-value=3.7e-19  Score=144.39  Aligned_cols=165  Identities=22%  Similarity=0.245  Sum_probs=133.9

Q ss_pred             CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCC
Q 044082           50 GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN  129 (243)
Q Consensus        50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~  129 (243)
                      .+++.|+++++        .+.. ++ .+..+++|++|++++|.++..  +. +..+++|++|++++|.+.+ ++ .+..
T Consensus        46 ~~L~~L~l~~~--------~i~~-~~-~~~~l~~L~~L~L~~n~l~~~--~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~  110 (291)
T 1h6t_A           46 NSIDQIIANNS--------DIKS-VQ-GIQYLPNVTKLFLNGNKLTDI--KP-LANLKNLGWLFLDENKVKD-LS-SLKD  110 (291)
T ss_dssp             HTCCEEECTTS--------CCCC-CT-TGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCC-GG-GGTT
T ss_pred             CcccEEEccCC--------Cccc-Ch-hHhcCCCCCEEEccCCccCCC--cc-cccCCCCCEEECCCCcCCC-Ch-hhcc
Confidence            46888999984        6553 33 478899999999999999874  44 8899999999999999884 33 3788


Q ss_pred             CCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCC
Q 044082          130 LTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTS  209 (243)
Q Consensus       130 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~  209 (243)
                      +++|++|++++|.++..  ..+..+++|++|++++|.+.+.+    .+..+++|++|++++|.+++..+    +..+ ++
T Consensus       111 l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~L~~N~l~~~~~----l~~l-~~  179 (291)
T 1h6t_A          111 LKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDIT----VLSRLTKLDTLSLEDNQISDIVP----LAGL-TK  179 (291)
T ss_dssp             CTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCCG----GGGGCTTCSEEECCSSCCCCCGG----GTTC-TT
T ss_pred             CCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcch----hhccCCCCCEEEccCCccccchh----hcCC-Cc
Confidence            99999999999998764  45788899999999999998873    67788999999999999887533    5556 89


Q ss_pred             CcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082          210 LALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       210 L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N  243 (243)
                      |+.|++++|.+++ ++ .+..+++ |+.|++++|
T Consensus       180 L~~L~L~~N~i~~-l~-~l~~l~~-L~~L~l~~n  210 (291)
T 1h6t_A          180 LQNLYLSKNHISD-LR-ALAGLKN-LDVLELFSQ  210 (291)
T ss_dssp             CCEEECCSSCCCB-CG-GGTTCTT-CSEEEEEEE
T ss_pred             cCEEECCCCcCCC-Ch-hhccCCC-CCEEECcCC
Confidence            9999999999985 44 3788888 999998865

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.81  E-value=2.8e-19  Score=149.37  Aligned_cols=155  Identities=26%  Similarity=0.188  Sum_probs=89.4

Q ss_pred             CCcEEEccCCCCCCCCcchhhc-CCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEE
Q 044082           83 HLNYLDLSVNDFLGNPIPEFIG-FFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLD  161 (243)
Q Consensus        83 ~L~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  161 (243)
                      .++.|++++|.++.. .+..+. .+++|++|++++|.+.+..+..+..+++|++|++++|+++...+..+..+++|++|+
T Consensus        40 ~l~~L~Ls~N~l~~l-~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  118 (361)
T 2xot_A           40 YTALLDLSHNNLSRL-RAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL  118 (361)
T ss_dssp             TCSEEECCSSCCCEE-CTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCEEECCCCCCCcc-ChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence            356666666666653 344444 566666666666666644445566666666666666666655555566666666666


Q ss_pred             cCCccccCCcchHHHhhccccccccccccccCCCCCCCCccc---ccCCCCCcEEECCCCccccccchhHHhhhc-cCce
Q 044082          162 LDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSS---MNSSTSLALLDLSSCGLSNSAYHWLFKISS-NLLA  237 (243)
Q Consensus       162 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~---~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~-~L~~  237 (243)
                      +++|.+...+.  ..+..+++|++|++++|.++.++.  ..+   ..+ ++|+.|+|++|.|++..+..+..++. .++.
T Consensus       119 L~~N~i~~~~~--~~~~~l~~L~~L~L~~N~l~~l~~--~~~~~~~~l-~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~  193 (361)
T 2xot_A          119 LYNNHIVVVDR--NAFEDMAQLQKLYLSQNQISRFPV--ELIKDGNKL-PKLMLLDLSSNKLKKLPLTDLQKLPAWVKNG  193 (361)
T ss_dssp             CCSSCCCEECT--TTTTTCTTCCEEECCSSCCCSCCG--GGTC----C-TTCCEEECCSSCCCCCCHHHHHHSCHHHHTT
T ss_pred             CCCCcccEECH--HHhCCcccCCEEECCCCcCCeeCH--HHhcCcccC-CcCCEEECCCCCCCccCHHHhhhccHhhcce
Confidence            66666665521  255666666666666666665443  222   233 66666666666666433345555543 0255


Q ss_pred             eeCCCC
Q 044082          238 LDLNSN  243 (243)
Q Consensus       238 L~l~~N  243 (243)
                      |++++|
T Consensus       194 l~l~~N  199 (361)
T 2xot_A          194 LYLHNN  199 (361)
T ss_dssp             EECCSS
T ss_pred             EEecCC
Confidence            666554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.81  E-value=2.8e-19  Score=136.90  Aligned_cols=149  Identities=14%  Similarity=0.147  Sum_probs=93.3

Q ss_pred             ceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCC
Q 044082           51 HVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNL  130 (243)
Q Consensus        51 ~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l  130 (243)
                      +++.|++++        |.+. .+| .+..+++|++|++++|.++.   +..+..+++|++|++++|.+.+..+..++.+
T Consensus        45 ~L~~L~l~~--------n~i~-~l~-~l~~l~~L~~L~l~~n~~~~---~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l  111 (197)
T 4ezg_A           45 SLTYITLAN--------INVT-DLT-GIEYAHNIKDLTINNIHATN---YNPISGLSNLERLRIMGKDVTSDKIPNLSGL  111 (197)
T ss_dssp             TCCEEEEES--------SCCS-CCT-TGGGCTTCSEEEEESCCCSC---CGGGTTCTTCCEEEEECTTCBGGGSCCCTTC
T ss_pred             CccEEeccC--------CCcc-ChH-HHhcCCCCCEEEccCCCCCc---chhhhcCCCCCEEEeECCccCcccChhhcCC
Confidence            466677776        3555 344 46666777777777775543   2356667777777777777665566666667


Q ss_pred             CCCcEEEccCCccccCCccccCCCCCCCEEEcCCcc-ccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCC
Q 044082          131 TNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVD-LSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTS  209 (243)
Q Consensus       131 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~  209 (243)
                      ++|++|++++|.++...+..+..+++|++|++++|. +.+.+    .+..+++|++|++++|.+++..    .+..+ ++
T Consensus       112 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~----~l~~l~~L~~L~l~~n~i~~~~----~l~~l-~~  182 (197)
T 4ezg_A          112 TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM----PLKTLPELKSLNIQFDGVHDYR----GIEDF-PK  182 (197)
T ss_dssp             TTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG----GGGGCSSCCEEECTTBCCCCCT----TGGGC-SS
T ss_pred             CCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH----hhcCCCCCCEEECCCCCCcChH----HhccC-CC
Confidence            777777777777666556666667777777777776 55543    4556667777777777666532    34444 66


Q ss_pred             CcEEECCCCccc
Q 044082          210 LALLDLSSCGLS  221 (243)
Q Consensus       210 L~~L~L~~n~i~  221 (243)
                      |+.|++++|+|.
T Consensus       183 L~~L~l~~N~i~  194 (197)
T 4ezg_A          183 LNQLYAFSQTIG  194 (197)
T ss_dssp             CCEEEECBC---
T ss_pred             CCEEEeeCcccC
Confidence            777777777664

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.80  E-value=3.7e-19  Score=136.25  Aligned_cols=151  Identities=19%  Similarity=0.219  Sum_probs=130.5

Q ss_pred             hccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCC
Q 044082           78 LLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKL  157 (243)
Q Consensus        78 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  157 (243)
                      .+.+++|++|++++|.++.  +| .+..+++|++|++++|.+. . +..+..+++|++|++++|.+++..+..+..+++|
T Consensus        40 ~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~l~~n~~~-~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  114 (197)
T 4ezg_A           40 EAQMNSLTYITLANINVTD--LT-GIEYAHNIKDLTINNIHAT-N-YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL  114 (197)
T ss_dssp             HHHHHTCCEEEEESSCCSC--CT-TGGGCTTCSEEEEESCCCS-C-CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred             hhhcCCccEEeccCCCccC--hH-HHhcCCCCCEEEccCCCCC-c-chhhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence            4778899999999999986  56 6899999999999999665 3 3468889999999999999998778889999999


Q ss_pred             CEEEcCCccccCCcchHHHhhcccccccccccccc-CCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCc
Q 044082          158 TQLDLDFVDLSEASDWLQVITSLASLRDLYLASST-LPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLL  236 (243)
Q Consensus       158 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~  236 (243)
                      ++|++++|.+.+..  +..+..+++|++|++++|. +...    ..+..+ ++|+.|++++|.+++ ++ .+..+++ |+
T Consensus       115 ~~L~Ls~n~i~~~~--~~~l~~l~~L~~L~L~~n~~i~~~----~~l~~l-~~L~~L~l~~n~i~~-~~-~l~~l~~-L~  184 (197)
T 4ezg_A          115 TLLDISHSAHDDSI--LTKINTLPKVNSIDLSYNGAITDI----MPLKTL-PELKSLNIQFDGVHD-YR-GIEDFPK-LN  184 (197)
T ss_dssp             CEEECCSSBCBGGG--HHHHTTCSSCCEEECCSCTBCCCC----GGGGGC-SSCCEEECTTBCCCC-CT-TGGGCSS-CC
T ss_pred             CEEEecCCccCcHh--HHHHhhCCCCCEEEccCCCCcccc----HhhcCC-CCCCEEECCCCCCcC-hH-HhccCCC-CC
Confidence            99999999998752  3478899999999999998 6554    246666 999999999999985 44 6888998 99


Q ss_pred             eeeCCCC
Q 044082          237 ALDLNSN  243 (243)
Q Consensus       237 ~L~l~~N  243 (243)
                      +|++++|
T Consensus       185 ~L~l~~N  191 (197)
T 4ezg_A          185 QLYAFSQ  191 (197)
T ss_dssp             EEEECBC
T ss_pred             EEEeeCc
Confidence            9999987

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.80  E-value=9.1e-19  Score=136.41  Aligned_cols=149  Identities=18%  Similarity=0.185  Sum_probs=129.7

Q ss_pred             cccceEEecCCC---------CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCC
Q 044082           38 CKWSGVQCSNRT---------GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTK  108 (243)
Q Consensus        38 ~~~~~~~c~~~~---------~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  108 (243)
                      |.|..+.|....         ..++.|++++        |.+.+..+..+.++++|++|++++|.++.. .|..+..+++
T Consensus        11 C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~--------n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~-~~~~~~~l~~   81 (220)
T 2v9t_B           11 CSNNIVDCRGKGLTEIPTNLPETITEIRLEQ--------NTIKVIPPGAFSPYKKLRRIDLSNNQISEL-APDAFQGLRS   81 (220)
T ss_dssp             EETTEEECTTSCCSSCCSSCCTTCCEEECCS--------SCCCEECTTSSTTCTTCCEEECCSSCCCEE-CTTTTTTCSS
T ss_pred             ECCCEEEcCCCCcCcCCCccCcCCCEEECCC--------CcCCCcCHhHhhCCCCCCEEECCCCcCCCc-CHHHhhCCcC
Confidence            568888886432         4789999999        588877777899999999999999999986 7889999999


Q ss_pred             CcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhcccccccccc
Q 044082          109 LRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYL  188 (243)
Q Consensus       109 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l  188 (243)
                      |++|++++|.+....+..+..+++|++|++++|.++...+..+..+++|++|++++|.++..+.  ..+..+++|++|++
T Consensus        82 L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~L  159 (220)
T 2v9t_B           82 LNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK--GTFSPLRAIQTMHL  159 (220)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCEEEC
T ss_pred             CCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH--HHHhCCCCCCEEEe
Confidence            9999999999995555567899999999999999999888899999999999999999999853  36888999999999


Q ss_pred             ccccCCCCC
Q 044082          189 ASSTLPSIN  197 (243)
Q Consensus       189 ~~n~~~~~~  197 (243)
                      ++|.+....
T Consensus       160 ~~N~~~c~c  168 (220)
T 2v9t_B          160 AQNPFICDC  168 (220)
T ss_dssp             CSSCEECSG
T ss_pred             CCCCcCCCC
Confidence            999987643

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.80  E-value=4.7e-19  Score=138.02  Aligned_cols=157  Identities=17%  Similarity=0.158  Sum_probs=133.4

Q ss_pred             EEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCC
Q 044082           53 IMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTN  132 (243)
Q Consensus        53 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~  132 (243)
                      +.+++++        +.++. +|..+.  +.+++|++++|.++....+..+..+++|++|++++|.+++..+..+..+++
T Consensus        14 ~~l~~s~--------n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~   82 (220)
T 2v70_A           14 TTVDCSN--------QKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG   82 (220)
T ss_dssp             TEEECCS--------SCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             CEeEeCC--------CCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCC
Confidence            3799999        46653 666553  457899999999987412345889999999999999999777778999999


Q ss_pred             CcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcE
Q 044082          133 LQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLAL  212 (243)
Q Consensus       133 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~  212 (243)
                      |++|++++|.+++..+..+..+++|++|++++|.+...+.  ..+..+++|++|++++|.+++..+  ..+..+ ++|+.
T Consensus        83 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l-~~L~~  157 (220)
T 2v70_A           83 VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGN--DSFIGLSSVRLLSLYDNQITTVAP--GAFDTL-HSLST  157 (220)
T ss_dssp             CCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCT--TSSTTCTTCSEEECTTSCCCCBCT--TTTTTC-TTCCE
T ss_pred             CCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECH--hHcCCCccCCEEECCCCcCCEECH--HHhcCC-CCCCE
Confidence            9999999999998888889999999999999999998832  378899999999999999999877  667777 99999


Q ss_pred             EECCCCccccccc
Q 044082          213 LDLSSCGLSNSAY  225 (243)
Q Consensus       213 L~L~~n~i~~~~~  225 (243)
                      |++++|.++...+
T Consensus       158 L~L~~N~l~c~c~  170 (220)
T 2v70_A          158 LNLLANPFNCNCY  170 (220)
T ss_dssp             EECCSCCEECSGG
T ss_pred             EEecCcCCcCCCc
Confidence            9999999986554

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.80  E-value=3.7e-19  Score=156.76  Aligned_cols=153  Identities=20%  Similarity=0.250  Sum_probs=120.3

Q ss_pred             ccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccc--cCCcCCCCCCCCcEEEccCCccccCCc-cccCCCC
Q 044082           79 LELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSG--RIPYQLGNLTNLQSLNLGYNSLYVSKF-GWLSHLN  155 (243)
Q Consensus        79 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~  155 (243)
                      ..+++|++|++++|.+++. .|..+..+++|++|++++|.+.+  ..|..+..+++|++|++++|.+++.+| ..+..++
T Consensus       350 ~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~  428 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDS-VFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE  428 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTT-TTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred             cCCCCceEEECCCCccccc-hhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence            5678888888888888876 78888888889999999888884  234567888889999999888887444 4477788


Q ss_pred             CCCEEEcCCccccCCcchHHHhhcc-ccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchh-HHhhhc
Q 044082          156 KLTQLDLDFVDLSEASDWLQVITSL-ASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHW-LFKISS  233 (243)
Q Consensus       156 ~L~~L~l~~n~l~~~~~~~~~~~~l-~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~-l~~l~~  233 (243)
                      +|++|++++|.+++.     .+..+ ++|+.|++++|.++.++.   .+..+ ++|+.|++++|+++ .+|.. +..+++
T Consensus       429 ~L~~L~l~~n~l~~~-----~~~~l~~~L~~L~L~~N~l~~ip~---~~~~l-~~L~~L~L~~N~l~-~l~~~~~~~l~~  498 (562)
T 3a79_B          429 SILVLNLSSNMLTGS-----VFRCLPPKVKVLDLHNNRIMSIPK---DVTHL-QALQELNVASNQLK-SVPDGVFDRLTS  498 (562)
T ss_dssp             TCCEEECCSSCCCGG-----GGSSCCTTCSEEECCSSCCCCCCT---TTTSS-CCCSEEECCSSCCC-CCCTTSTTTCTT
T ss_pred             cCCEEECCCCCCCcc-----hhhhhcCcCCEEECCCCcCcccCh---hhcCC-CCCCEEECCCCCCC-CCCHHHHhcCCC
Confidence            889999998888654     12223 689999999999886554   45566 89999999999998 56665 788888


Q ss_pred             cCceeeCCCC
Q 044082          234 NLLALDLNSN  243 (243)
Q Consensus       234 ~L~~L~l~~N  243 (243)
                       |++|++++|
T Consensus       499 -L~~L~l~~N  507 (562)
T 3a79_B          499 -LQYIWLHDN  507 (562)
T ss_dssp             -CCCEECCSC
T ss_pred             -CCEEEecCC
Confidence             999999887

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.80  E-value=6.6e-19  Score=146.01  Aligned_cols=149  Identities=24%  Similarity=0.298  Sum_probs=89.7

Q ss_pred             hccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCC
Q 044082           78 LLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKL  157 (243)
Q Consensus        78 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  157 (243)
                      +..+++|+++++++|.++..  +. +..+++|++|++++|.+.+. +. +..+++|++|++++|.++..  ..+..+++|
T Consensus       195 ~~~l~~L~~L~l~~n~l~~~--~~-~~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L  267 (347)
T 4fmz_A          195 LASLTSLHYFTAYVNQITDI--TP-VANMTRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQISDI--NAVKDLTKL  267 (347)
T ss_dssp             GGGCTTCCEEECCSSCCCCC--GG-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred             ccCCCccceeecccCCCCCC--ch-hhcCCcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCccCCC--hhHhcCCCc
Confidence            44555555555555555442  22 55566666666666666532 22 55666666666666666543  335666667


Q ss_pred             CEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCce
Q 044082          158 TQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLA  237 (243)
Q Consensus       158 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~  237 (243)
                      ++|++++|.+.+.+    .+..+++|++|++++|.+.+..+  ..+..+ ++|+.|++++|.+++..|  +..+++ |++
T Consensus       268 ~~L~l~~n~l~~~~----~~~~l~~L~~L~L~~n~l~~~~~--~~l~~l-~~L~~L~L~~n~l~~~~~--~~~l~~-L~~  337 (347)
T 4fmz_A          268 KMLNVGSNQISDIS----VLNNLSQLNSLFLNNNQLGNEDM--EVIGGL-TNLTTLFLSQNHITDIRP--LASLSK-MDS  337 (347)
T ss_dssp             CEEECCSSCCCCCG----GGGGCTTCSEEECCSSCCCGGGH--HHHHTC-TTCSEEECCSSSCCCCGG--GGGCTT-CSE
T ss_pred             CEEEccCCccCCCh----hhcCCCCCCEEECcCCcCCCcCh--hHhhcc-ccCCEEEccCCccccccC--hhhhhc-cce
Confidence            77777766666653    35566667777777776665544  444555 677777777777765433  566666 777


Q ss_pred             eeCCCC
Q 044082          238 LDLNSN  243 (243)
Q Consensus       238 L~l~~N  243 (243)
                      |++++|
T Consensus       338 L~l~~N  343 (347)
T 4fmz_A          338 ADFANQ  343 (347)
T ss_dssp             ESSSCC
T ss_pred             eehhhh
Confidence            777665

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.80  E-value=9.5e-19  Score=134.97  Aligned_cols=156  Identities=23%  Similarity=0.200  Sum_probs=129.7

Q ss_pred             EEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCC
Q 044082           53 IMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTN  132 (243)
Q Consensus        53 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~  132 (243)
                      +.++.++        ++++ .+|..+  .++|++|++++|.++.. .+..+..+++|++|++++|.+.+..+..+..+++
T Consensus        10 ~~v~c~~--------~~l~-~~p~~~--~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~   77 (208)
T 2o6s_A           10 TTVECYS--------QGRT-SVPTGI--PAQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTS   77 (208)
T ss_dssp             TEEECCS--------SCCS-SCCSCC--CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CEEEecC--------CCcc-CCCCCC--CCCCcEEEcCCCccCcC-ChhhhcccccCcEEECCCCccCccChhhcCCCCC
Confidence            4577777        3544 344333  46899999999999975 5666889999999999999999655566789999


Q ss_pred             CcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcE
Q 044082          133 LQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLAL  212 (243)
Q Consensus       133 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~  212 (243)
                      |++|++++|.++...+..+..+++|++|++++|.+...+.  ..+..+++|++|++++|.+++..+  ..+..+ ++|+.
T Consensus        78 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~l~~N~l~~~~~--~~~~~l-~~L~~  152 (208)
T 2o6s_A           78 LTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPD--GVFDKLTQLKDLRLYQNQLKSVPD--GVFDRL-TSLQY  152 (208)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCSCCCT--TTTTTC-TTCCE
T ss_pred             cCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCH--hHhccCCcCCEEECCCCccceeCH--HHhccC-CCccE
Confidence            9999999999997777778999999999999999998853  357889999999999999998776  456666 99999


Q ss_pred             EECCCCccccccc
Q 044082          213 LDLSSCGLSNSAY  225 (243)
Q Consensus       213 L~L~~n~i~~~~~  225 (243)
                      |++++|.+.+..+
T Consensus       153 L~l~~N~~~~~~~  165 (208)
T 2o6s_A          153 IWLHDNPWDCTCP  165 (208)
T ss_dssp             EECCSCCBCCCTT
T ss_pred             EEecCCCeecCCC
Confidence            9999999987654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.80  E-value=3.5e-20  Score=169.83  Aligned_cols=176  Identities=19%  Similarity=0.188  Sum_probs=118.1

Q ss_pred             CCceEEEecCCCCCCCCCCCCccc-----------------ccchhhc--cCCCCcEEEccCCCCCCCCcchhhcCCCCC
Q 044082           49 TGHVIMLNLKYKVDPVCPNRPLRG-----------------NINSSLL--ELQHLNYLDLSVNDFLGNPIPEFIGFFTKL  109 (243)
Q Consensus        49 ~~~l~~L~l~~~~~~~~~~~~~~~-----------------~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  109 (243)
                      ..+++.|+|++        |.+++                 .+|..++  ++++|++|++++|.+.+. +|..+..+++|
T Consensus       447 L~~L~~L~Ls~--------N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~-iP~~l~~L~~L  517 (876)
T 4ecn_A          447 LTKLQIIYFAN--------SPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ-LPDFLYDLPEL  517 (876)
T ss_dssp             CTTCCEEEEES--------CCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCS-CCGGGGGCSSC
T ss_pred             CCCCCEEECcC--------CcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCcc-ChHHHhCCCCC
Confidence            36788999998        47776                 3788777  888888888888888776 88888888888


Q ss_pred             cEEecCCcc-ccc-cCCcCCC-------CCCCCcEEEccCCccccCCcc--ccCCCCCCCEEEcCCccccCCcchHHHhh
Q 044082          110 RFLDLSLAN-FSG-RIPYQLG-------NLTNLQSLNLGYNSLYVSKFG--WLSHLNKLTQLDLDFVDLSEASDWLQVIT  178 (243)
Q Consensus       110 ~~L~l~~~~-~~~-~~~~~l~-------~l~~L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~~~~~  178 (243)
                      ++|++++|. +++ .+|..++       .+++|++|++++|.++ .+|.  .++.+++|+.|++++|.+..+|    .+.
T Consensus       518 ~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp----~~~  592 (876)
T 4ecn_A          518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLE----AFG  592 (876)
T ss_dssp             CEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCC----CCC
T ss_pred             CEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccch----hhc
Confidence            888888887 766 5554333       3447777777777777 5566  6777777777777777776444    456


Q ss_pred             ccccccccccccccCCCCCCCCcccccCCCC-CcEEECCCCccccccchhHHhhhc-cCceeeCCCC
Q 044082          179 SLASLRDLYLASSTLPSINRPSLSSMNSSTS-LALLDLSSCGLSNSAYHWLFKISS-NLLALDLNSN  243 (243)
Q Consensus       179 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~-L~~L~L~~n~i~~~~~~~l~~l~~-~L~~L~l~~N  243 (243)
                      .+++|+.|++++|.+..+ +  ..+..+ ++ |+.|++++|.++ .+|..+..... +|+.|++++|
T Consensus       593 ~L~~L~~L~Ls~N~l~~l-p--~~l~~l-~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N  654 (876)
T 4ecn_A          593 TNVKLTDLKLDYNQIEEI-P--EDFCAF-TDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYN  654 (876)
T ss_dssp             TTSEESEEECCSSCCSCC-C--TTSCEE-CTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSS
T ss_pred             CCCcceEEECcCCccccc-h--HHHhhc-cccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCC
Confidence            666677777777766633 3  244444 55 666666666665 45554433321 1444554443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.80  E-value=1.8e-18  Score=143.42  Aligned_cols=149  Identities=25%  Similarity=0.339  Sum_probs=117.6

Q ss_pred             hccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCC
Q 044082           78 LLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKL  157 (243)
Q Consensus        78 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  157 (243)
                      +..+++|++|++++|.+..  ++. +..+++|+++++++|.+.+..+  +..+++|++|++++|.++...+  +..+++|
T Consensus       173 ~~~l~~L~~L~l~~n~l~~--~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L  245 (347)
T 4fmz_A          173 IANLTDLYSLSLNYNQIED--ISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQL  245 (347)
T ss_dssp             GGGCTTCSEEECTTSCCCC--CGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTC
T ss_pred             hccCCCCCEEEccCCcccc--ccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCC
Confidence            5666677777777776665  333 6667777777777776664333  6678889999999998876544  7888899


Q ss_pred             CEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCce
Q 044082          158 TQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLA  237 (243)
Q Consensus       158 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~  237 (243)
                      ++|++++|.+.+.+    .+..+++|++|++++|.+++.    ..+..+ ++|+.|++++|.+++..+..+..+++ |++
T Consensus       246 ~~L~l~~n~l~~~~----~~~~l~~L~~L~l~~n~l~~~----~~~~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~  315 (347)
T 4fmz_A          246 TWLEIGTNQISDIN----AVKDLTKLKMLNVGSNQISDI----SVLNNL-SQLNSLFLNNNQLGNEDMEVIGGLTN-LTT  315 (347)
T ss_dssp             CEEECCSSCCCCCG----GGTTCTTCCEEECCSSCCCCC----GGGGGC-TTCSEEECCSSCCCGGGHHHHHTCTT-CSE
T ss_pred             CEEECCCCccCCCh----hHhcCCCcCEEEccCCccCCC----hhhcCC-CCCCEEECcCCcCCCcChhHhhcccc-CCE
Confidence            99999999888763    577889999999999998875    345666 99999999999999888889999999 999


Q ss_pred             eeCCCC
Q 044082          238 LDLNSN  243 (243)
Q Consensus       238 L~l~~N  243 (243)
                      |++++|
T Consensus       316 L~L~~n  321 (347)
T 4fmz_A          316 LFLSQN  321 (347)
T ss_dssp             EECCSS
T ss_pred             EEccCC
Confidence            999987

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.80  E-value=1e-18  Score=136.08  Aligned_cols=149  Identities=17%  Similarity=0.132  Sum_probs=128.1

Q ss_pred             cccceEEecCCC---------CceEEEecCCCCCCCCCCCCcccccc-hhhccCCCCcEEEccCCCCCCCCcchhhcCCC
Q 044082           38 CKWSGVQCSNRT---------GHVIMLNLKYKVDPVCPNRPLRGNIN-SSLLELQHLNYLDLSVNDFLGNPIPEFIGFFT  107 (243)
Q Consensus        38 ~~~~~~~c~~~~---------~~l~~L~l~~~~~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  107 (243)
                      |.|..+.|....         ..++.|++++        |.+++..+ ..+.++++|++|++++|.++.. .+..+..++
T Consensus        11 C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~--------N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l~   81 (220)
T 2v70_A           11 CEGTTVDCSNQKLNKIPEHIPQYTAELRLNN--------NEFTVLEATGIFKKLPQLRKINFSNNKITDI-EEGAFEGAS   81 (220)
T ss_dssp             EETTEEECCSSCCSSCCSCCCTTCSEEECCS--------SCCCEECCCCCGGGCTTCCEEECCSSCCCEE-CTTTTTTCT
T ss_pred             ECCCEeEeCCCCcccCccCCCCCCCEEEcCC--------CcCCccCchhhhccCCCCCEEECCCCcCCEE-CHHHhCCCC
Confidence            567777775422         3578899999        58887654 4589999999999999999885 566899999


Q ss_pred             CCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCC-cchHHHhhcccccccc
Q 044082          108 KLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEA-SDWLQVITSLASLRDL  186 (243)
Q Consensus       108 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~~~l~~L~~L  186 (243)
                      +|++|++++|.+.+..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.++.. +.   .+..+++|+.|
T Consensus        82 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L  158 (220)
T 2v70_A           82 GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPG---AFDTLHSLSTL  158 (220)
T ss_dssp             TCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTT---TTTTCTTCCEE
T ss_pred             CCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHH---HhcCCCCCCEE
Confidence            999999999999977777789999999999999999988888999999999999999999998 44   78899999999


Q ss_pred             ccccccCCCCCC
Q 044082          187 YLASSTLPSINR  198 (243)
Q Consensus       187 ~l~~n~~~~~~~  198 (243)
                      ++++|.+.+...
T Consensus       159 ~L~~N~l~c~c~  170 (220)
T 2v70_A          159 NLLANPFNCNCY  170 (220)
T ss_dssp             ECCSCCEECSGG
T ss_pred             EecCcCCcCCCc
Confidence            999999886543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.80  E-value=1.7e-19  Score=142.11  Aligned_cols=175  Identities=15%  Similarity=0.155  Sum_probs=142.9

Q ss_pred             CCceEEEecCCCCCCCCCCCC-cccccchhhccCCCCcEEEccC-CCCCCCCcchhhcCCCCCcEEecCCccccccCCcC
Q 044082           49 TGHVIMLNLKYKVDPVCPNRP-LRGNINSSLLELQHLNYLDLSV-NDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQ  126 (243)
Q Consensus        49 ~~~l~~L~l~~~~~~~~~~~~-~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  126 (243)
                      ..+++.|++++        |. ++...+..+.++++|++|++++ |.++.. .+..+..+++|++|++++|.+.+ +|. 
T Consensus        54 l~~L~~L~l~~--------n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i-~~~~f~~l~~L~~L~l~~n~l~~-lp~-  122 (239)
T 2xwt_C           54 LPNISRIYVSI--------DVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI-DPDALKELPLLKFLGIFNTGLKM-FPD-  122 (239)
T ss_dssp             CTTCCEEEEEC--------CSSCCEECTTTEESCTTCCEEEEEEETTCCEE-CTTSEECCTTCCEEEEEEECCCS-CCC-
T ss_pred             CCCCcEEeCCC--------CCCcceeCHhHcCCCcCCcEEECCCCCCeeEc-CHHHhCCCCCCCEEeCCCCCCcc-ccc-
Confidence            36899999999        45 6665566889999999999998 999875 55778999999999999999994 666 


Q ss_pred             CCCCCCCc---EEEccCC-ccccCCccccCCCCCCC-EEEcCCccccCCcchHHHhhcccccccccccccc-CCCCCCCC
Q 044082          127 LGNLTNLQ---SLNLGYN-SLYVSKFGWLSHLNKLT-QLDLDFVDLSEASDWLQVITSLASLRDLYLASST-LPSINRPS  200 (243)
Q Consensus       127 l~~l~~L~---~L~l~~n-~l~~~~~~~l~~l~~L~-~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~  200 (243)
                      +..+++|+   +|++++| .++...+..+..+++|+ .|++++|.+...+.  ..+.. ++|++|++++|+ ++.+.+  
T Consensus       123 ~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~--~~~~~-~~L~~L~L~~n~~l~~i~~--  197 (239)
T 2xwt_C          123 LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQG--YAFNG-TKLDAVYLNKNKYLTVIDK--  197 (239)
T ss_dssp             CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECT--TTTTT-CEEEEEECTTCTTCCEECT--
T ss_pred             cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCH--hhcCC-CCCCEEEcCCCCCcccCCH--
Confidence            77888888   9999999 89877777799999999 99999999997754  23444 799999999995 887655  


Q ss_pred             cccccCCCCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082          201 LSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       201 ~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N  243 (243)
                      ..+..+.++|+.|++++|.++ .+|..  .+++ |++|+++++
T Consensus       198 ~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~-L~~L~l~~~  236 (239)
T 2xwt_C          198 DAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEH-LKELIARNT  236 (239)
T ss_dssp             TTTTTCSBCCSEEECTTCCCC-CCCCT--TCTT-CSEEECTTC
T ss_pred             HHhhccccCCcEEECCCCccc-cCChh--Hhcc-CceeeccCc
Confidence            333332278999999999998 46654  5667 999998865

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.79  E-value=7.8e-20  Score=150.06  Aligned_cols=128  Identities=19%  Similarity=0.175  Sum_probs=61.9

Q ss_pred             CCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCcccc-CCCCCCCEEEcCCccccCCcchHHHhhcccccc
Q 044082          106 FTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWL-SHLNKLTQLDLDFVDLSEASDWLQVITSLASLR  184 (243)
Q Consensus       106 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~  184 (243)
                      +++|++|++++|.+.+..+..+..+++|++|++++|.++...+..+ ..+++|++|++++|.++..+.    ...+++|+
T Consensus       119 ~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~l~~L~  194 (317)
T 3o53_A          119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG----QVVFAKLK  194 (317)
T ss_dssp             CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC----CCCCTTCC
T ss_pred             cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc----ccccccCC
Confidence            4455555555555554444444455555555555555554433333 234555555555555544421    11244555


Q ss_pred             ccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082          185 DLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       185 ~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N  243 (243)
                      +|++++|.+++.++   .+..+ ++|+.|++++|.++ .+|..+..+++ |++|++++|
T Consensus       195 ~L~Ls~N~l~~l~~---~~~~l-~~L~~L~L~~N~l~-~l~~~~~~l~~-L~~L~l~~N  247 (317)
T 3o53_A          195 TLDLSSNKLAFMGP---EFQSA-AGVTWISLRNNKLV-LIEKALRFSQN-LEHFDLRGN  247 (317)
T ss_dssp             EEECCSSCCCEECG---GGGGG-TTCSEEECTTSCCC-EECTTCCCCTT-CCEEECTTC
T ss_pred             EEECCCCcCCcchh---hhccc-CcccEEECcCCccc-chhhHhhcCCC-CCEEEccCC
Confidence            55555555544332   23333 55555555555554 34444444444 555555544

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.79  E-value=3.5e-19  Score=148.73  Aligned_cols=171  Identities=23%  Similarity=0.187  Sum_probs=142.1

Q ss_pred             cccceEEecCCC---------CceEEEecCCCCCCCCCCCCcccccchhhc-cCCCCcEEEccCCCCCCCCcchhhcCCC
Q 044082           38 CKWSGVQCSNRT---------GHVIMLNLKYKVDPVCPNRPLRGNINSSLL-ELQHLNYLDLSVNDFLGNPIPEFIGFFT  107 (243)
Q Consensus        38 ~~~~~~~c~~~~---------~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~  107 (243)
                      |.+..+.|....         ..++.|+|++        |.+++..+..+. ++++|++|++++|.++.. .+..+..++
T Consensus        18 C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~--------N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l~   88 (361)
T 2xot_A           18 CASNILSCSKQQLPNVPQSLPSYTALLDLSH--------NNLSRLRAEWTPTRLTNLHSLLLSHNHLNFI-SSEAFVPVP   88 (361)
T ss_dssp             EETTEEECCSSCCSSCCSSCCTTCSEEECCS--------SCCCEECTTSSSSCCTTCCEEECCSSCCCEE-CTTTTTTCT
T ss_pred             ECCCEEEeCCCCcCccCccCCCCCCEEECCC--------CCCCccChhhhhhcccccCEEECCCCcCCcc-ChhhccCCC
Confidence            456677775422         4578899999        588877777777 999999999999999985 567899999


Q ss_pred             CCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHh---hcccccc
Q 044082          108 KLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVI---TSLASLR  184 (243)
Q Consensus       108 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~---~~l~~L~  184 (243)
                      +|++|++++|.+....+..+..+++|++|++++|.++...+..+..+++|+.|++++|.+...+.  ..+   ..+++|+
T Consensus        89 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~--~~~~~~~~l~~L~  166 (361)
T 2xot_A           89 NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV--ELIKDGNKLPKLM  166 (361)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCG--GGTC----CTTCC
T ss_pred             CCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCH--HHhcCcccCCcCC
Confidence            99999999999996666678999999999999999998888889999999999999999999864  233   6789999


Q ss_pred             ccccccccCCCCCCCCcccccCCCC--CcEEECCCCcccc
Q 044082          185 DLYLASSTLPSINRPSLSSMNSSTS--LALLDLSSCGLSN  222 (243)
Q Consensus       185 ~L~l~~n~~~~~~~~~~~~~~~~~~--L~~L~L~~n~i~~  222 (243)
                      +|++++|.++.++.  ..+..+ +.  ++.|++++|.+.-
T Consensus       167 ~L~L~~N~l~~l~~--~~~~~l-~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          167 LLDLSSNKLKKLPL--TDLQKL-PAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             EEECCSSCCCCCCH--HHHHHS-CHHHHTTEECCSSCEEC
T ss_pred             EEECCCCCCCccCH--HHhhhc-cHhhcceEEecCCCccC
Confidence            99999999998765  455555 65  4889999999864

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.79  E-value=1.6e-18  Score=135.78  Aligned_cols=149  Identities=26%  Similarity=0.276  Sum_probs=129.3

Q ss_pred             CcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcC
Q 044082           84 LNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLD  163 (243)
Q Consensus        84 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  163 (243)
                      .+.++.+++.++.  +|..+.  ++|++|++++|.+.+..|..+..+++|++|++++|.++...+..+..+++|++|+++
T Consensus        21 ~~~v~c~~~~l~~--ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls   96 (229)
T 3e6j_A           21 GTTVDCRSKRHAS--VPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG   96 (229)
T ss_dssp             TTEEECTTSCCSS--CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEeEccCCCcCc--cCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence            4578999998877  666553  889999999999998878889999999999999999987766778999999999999


Q ss_pred             CccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082          164 FVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       164 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N  243 (243)
                      +|.++..+.  ..+..+++|++|++++|.++.++.   .+..+ ++|+.|++++|+|++..+..+..+++ |++|++++|
T Consensus        97 ~N~l~~l~~--~~~~~l~~L~~L~Ls~N~l~~lp~---~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~l~~N  169 (229)
T 3e6j_A           97 TNQLTVLPS--AVFDRLVHLKELFMCCNKLTELPR---GIERL-THLTHLALDQNQLKSIPHGAFDRLSS-LTHAYLFGN  169 (229)
T ss_dssp             SSCCCCCCT--TTTTTCTTCCEEECCSSCCCSCCT---TGGGC-TTCSEEECCSSCCCCCCTTTTTTCTT-CCEEECTTS
T ss_pred             CCcCCccCh--hHhCcchhhCeEeccCCcccccCc---ccccC-CCCCEEECCCCcCCccCHHHHhCCCC-CCEEEeeCC
Confidence            999998853  367889999999999999996543   56677 99999999999999655567888988 999999987

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.79  E-value=5.4e-21  Score=157.84  Aligned_cols=164  Identities=23%  Similarity=0.207  Sum_probs=84.7

Q ss_pred             cchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCc-ccccc-CCcCCCCCCCCcEEEccCC-ccccC-Ccc
Q 044082           74 INSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLA-NFSGR-IPYQLGNLTNLQSLNLGYN-SLYVS-KFG  149 (243)
Q Consensus        74 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~-~~~~~-~~~~l~~l~~L~~L~l~~n-~l~~~-~~~  149 (243)
                      ++..+..+++|++|++++|.++.. .+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .++.. .+.
T Consensus       110 ~~~~~~~~~~L~~L~L~~~~l~~~-~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~  188 (336)
T 2ast_B          110 LHGILSQCSKLQNLSLEGLRLSDP-IVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV  188 (336)
T ss_dssp             HHHHHTTBCCCSEEECTTCBCCHH-HHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH
T ss_pred             HHHHHhhCCCCCEEeCcCcccCHH-HHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH
Confidence            444455555555555555555443 4555555555555555555 34421 3333445555555565555 55432 233


Q ss_pred             ccCCCC-CCCEEEcCCcc--ccCCcchHHHhhcccccccccccccc-CCCCCCCCcccccCCCCCcEEECCCC-cccccc
Q 044082          150 WLSHLN-KLTQLDLDFVD--LSEASDWLQVITSLASLRDLYLASST-LPSINRPSLSSMNSSTSLALLDLSSC-GLSNSA  224 (243)
Q Consensus       150 ~l~~l~-~L~~L~l~~n~--l~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~~~~L~~L~L~~n-~i~~~~  224 (243)
                      .+..++ +|++|++++|.  +++. .++..+..+++|++|++++|. +++..+  ..+..+ ++|+.|++++| .+++..
T Consensus       189 ~~~~l~~~L~~L~l~~~~~~~~~~-~l~~~~~~~~~L~~L~l~~~~~l~~~~~--~~l~~l-~~L~~L~l~~~~~~~~~~  264 (336)
T 2ast_B          189 AVAHVSETITQLNLSGYRKNLQKS-DLSTLVRRCPNLVHLDLSDSVMLKNDCF--QEFFQL-NYLQHLSLSRCYDIIPET  264 (336)
T ss_dssp             HHHHSCTTCCEEECCSCGGGSCHH-HHHHHHHHCTTCSEEECTTCTTCCGGGG--GGGGGC-TTCCEEECTTCTTCCGGG
T ss_pred             HHHhcccCCCEEEeCCCcccCCHH-HHHHHHhhCCCCCEEeCCCCCcCCHHHH--HHHhCC-CCCCEeeCCCCCCCCHHH
Confidence            344555 66666666653  2211 122344556666666666665 443333  344445 66666666666 333333


Q ss_pred             chhHHhhhccCceeeCCCC
Q 044082          225 YHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       225 ~~~l~~l~~~L~~L~l~~N  243 (243)
                      ...+..+++ |++|++++|
T Consensus       265 ~~~l~~~~~-L~~L~l~~~  282 (336)
T 2ast_B          265 LLELGEIPT-LKTLQVFGI  282 (336)
T ss_dssp             GGGGGGCTT-CCEEECTTS
T ss_pred             HHHHhcCCC-CCEEeccCc
Confidence            334555666 666666654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.79  E-value=1.8e-19  Score=157.19  Aligned_cols=127  Identities=22%  Similarity=0.287  Sum_probs=109.0

Q ss_pred             CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCC
Q 044082           50 GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN  129 (243)
Q Consensus        50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~  129 (243)
                      .+++.|++++        |.+.+..|..+.++++|++|++++|.++.. .|..+..+++|++|++++|.+. .+|..  .
T Consensus        21 ~~L~~L~Ls~--------n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~   88 (520)
T 2z7x_B           21 QKTTILNISQ--------NYISELWTSDILSLSKLRILIISHNRIQYL-DISVFKFNQELEYLDLSHNKLV-KISCH--P   88 (520)
T ss_dssp             TTCSEEECCS--------SCCCCCCHHHHTTCTTCCEEECCSSCCCEE-EGGGGTTCTTCCEEECCSSCCC-EEECC--C
T ss_pred             ccccEEECCC--------CcccccChhhccccccccEEecCCCccCCc-ChHHhhcccCCCEEecCCCcee-ecCcc--c
Confidence            6899999999        588887778899999999999999999885 6889999999999999999998 56665  7


Q ss_pred             CCCCcEEEccCCcccc-CCccccCCCCCCCEEEcCCccccCCcchHHHhhccccc--cccccccccC
Q 044082          130 LTNLQSLNLGYNSLYV-SKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASL--RDLYLASSTL  193 (243)
Q Consensus       130 l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L--~~L~l~~n~~  193 (243)
                      +++|++|++++|.+++ ..|..++.+++|++|++++|.+...     .+..+++|  ++|++++|.+
T Consensus        89 l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~-----~~~~l~~L~L~~L~l~~n~l  150 (520)
T 2z7x_B           89 TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS-----SVLPIAHLNISKVLLVLGET  150 (520)
T ss_dssp             CCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG-----GGGGGTTSCEEEEEEEECTT
T ss_pred             cCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh-----hccccccceeeEEEeecccc
Confidence            8999999999999987 4678899999999999999998763     44556666  8888888877

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.78  E-value=6.1e-19  Score=154.97  Aligned_cols=176  Identities=17%  Similarity=0.206  Sum_probs=100.2

Q ss_pred             CCCCCCCCCCCCc-----ccceE-EecCCCCceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCc
Q 044082           26 SSWGSDEGRKDCC-----KWSGV-QCSNRTGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPI   99 (243)
Q Consensus        26 ~~w~~~~~~~~~~-----~~~~~-~c~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~   99 (243)
                      .+|.   .+..+|     .|.++ .|..  .+++.|+++++        .+++ +|..+.  ++|++|++++|.++.  +
T Consensus        34 ~~W~---~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n--------~L~~-lp~~l~--~~L~~L~Ls~N~l~~--i   95 (571)
T 3cvr_A           34 DKWE---KQALPGENRNEAVSLLKECLI--NQFSELQLNRL--------NLSS-LPDNLP--PQITVLEITQNALIS--L   95 (571)
T ss_dssp             HHHH---TTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSS--------CCSC-CCSCCC--TTCSEEECCSSCCSC--C
T ss_pred             HHHh---ccCCccccccchhhhcccccc--CCccEEEeCCC--------CCCc-cCHhHc--CCCCEEECcCCCCcc--c
Confidence            4565   355566     68888 6753  47888888885        4443 443332  445555555555543  3


Q ss_pred             chhhcCCCCCcEEecCCccccccCCcCCC------------------CCCCCcEEEccCCccccCCccccCCCCCCCEEE
Q 044082          100 PEFIGFFTKLRFLDLSLANFSGRIPYQLG------------------NLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLD  161 (243)
Q Consensus       100 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~------------------~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  161 (243)
                      |   ..+++|++|++++|.+++ +|. +.                  .+++|++|++++|.+++ +|.   .+++|++|+
T Consensus        96 p---~~l~~L~~L~Ls~N~l~~-ip~-l~~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~  166 (571)
T 3cvr_A           96 P---ELPASLEYLDACDNRLST-LPE-LPASLKHLDVDNNQLTMLPELPALLEYINADNNQLTM-LPE---LPTSLEVLS  166 (571)
T ss_dssp             C---CCCTTCCEEECCSSCCSC-CCC-CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC---CCTTCCEEE
T ss_pred             c---cccCCCCEEEccCCCCCC-cch-hhcCCCEEECCCCcCCCCCCcCccccEEeCCCCccCc-CCC---cCCCcCEEE
Confidence            3   223444444444444442 333 22                  34455555555555543 232   345566666


Q ss_pred             cCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCC-------cEEECCCCccccccchhHHhhhcc
Q 044082          162 LDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSL-------ALLDLSSCGLSNSAYHWLFKISSN  234 (243)
Q Consensus       162 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L-------~~L~L~~n~i~~~~~~~l~~l~~~  234 (243)
                      +++|.++.+|.    +.  ++|+.|++++|.++.++.    +.   .+|       +.|++++|.|+ .+|..+..+++ 
T Consensus       167 Ls~N~L~~lp~----l~--~~L~~L~Ls~N~L~~lp~----~~---~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~-  231 (571)
T 3cvr_A          167 VRNNQLTFLPE----LP--ESLEALDVSTNLLESLPA----VP---VRNHHSEETEIFFRCRENRIT-HIPENILSLDP-  231 (571)
T ss_dssp             CCSSCCSCCCC----CC--TTCCEEECCSSCCSSCCC----CC-----------CCEEEECCSSCCC-CCCGGGGGSCT-
T ss_pred             CCCCCCCCcch----hh--CCCCEEECcCCCCCchhh----HH---HhhhcccccceEEecCCCcce-ecCHHHhcCCC-
Confidence            66666665543    11  567777777777664322    11   244       88888888887 57777878877 


Q ss_pred             CceeeCCCC
Q 044082          235 LLALDLNSN  243 (243)
Q Consensus       235 L~~L~l~~N  243 (243)
                      |++|++++|
T Consensus       232 L~~L~L~~N  240 (571)
T 3cvr_A          232 TCTIILEDN  240 (571)
T ss_dssp             TEEEECCSS
T ss_pred             CCEEEeeCC
Confidence            888888876

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.78  E-value=2.1e-19  Score=157.60  Aligned_cols=172  Identities=22%  Similarity=0.213  Sum_probs=146.9

Q ss_pred             EecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCc
Q 044082           55 LNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQ  134 (243)
Q Consensus        55 L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~  134 (243)
                      .|.++        +.++ .+|..+.  ++|++|++++|.++.. .|..+..+++|++|++++|.+.+..|..++.+++|+
T Consensus        10 c~~~~--------~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~   77 (549)
T 2z81_A           10 CDGRS--------RSFT-SIPSGLT--AAMKSLDLSFNKITYI-GHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLE   77 (549)
T ss_dssp             EECTT--------SCCS-SCCSCCC--TTCCEEECCSSCCCEE-CSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             EECCC--------Cccc-cccccCC--CCccEEECcCCccCcc-ChhhhhcCCcccEEECCCCCcCccChhhccccccCC
Confidence            67777        4655 4666554  7899999999999886 678899999999999999999987778899999999


Q ss_pred             EEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhcccccccccccccc-CCCCCCCCcccccCCCCCcEE
Q 044082          135 SLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASST-LPSINRPSLSSMNSSTSLALL  213 (243)
Q Consensus       135 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~~~~L~~L  213 (243)
                      +|++++|.+++..+..++.+++|++|++++|.+...+. +..+..+++|++|++++|. +..+++  ..+..+ ++|+.|
T Consensus        78 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~~--~~~~~l-~~L~~L  153 (549)
T 2z81_A           78 HLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGV-TSLFPNLTNLQTLRIGNVETFSEIRR--IDFAGL-TSLNEL  153 (549)
T ss_dssp             EEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCS-SCSCTTCTTCCEEEEEESSSCCEECT--TTTTTC-CEEEEE
T ss_pred             EEECCCCccCccCHHHhccCCCCcEEECCCCcccccch-hhhhhccCCccEEECCCCccccccCH--hhhhcc-cccCee
Confidence            99999999998888889999999999999999986521 2268899999999999998 444443  456666 999999


Q ss_pred             ECCCCccccccchhHHhhhccCceeeCCCC
Q 044082          214 DLSSCGLSNSAYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       214 ~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N  243 (243)
                      ++++|.+++..|..+..+++ |++|++++|
T Consensus       154 ~L~~n~l~~~~~~~l~~l~~-L~~L~l~~n  182 (549)
T 2z81_A          154 EIKALSLRNYQSQSLKSIRD-IHHLTLHLS  182 (549)
T ss_dssp             EEEETTCCEECTTTTTTCSE-EEEEEEECS
T ss_pred             eccCCcccccChhhhhcccc-CceEecccC
Confidence            99999999889999999998 999998765

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.78  E-value=2.7e-18  Score=149.74  Aligned_cols=160  Identities=23%  Similarity=0.196  Sum_probs=112.3

Q ss_pred             CCceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCC--CCcchhhcCCCCCcEEecCCccccccCCcC
Q 044082           49 TGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLG--NPIPEFIGFFTKLRFLDLSLANFSGRIPYQ  126 (243)
Q Consensus        49 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  126 (243)
                      ...++.|++++        |.+.+.+|..+.++++|++|++++|.++.  . +|..+..+++|++|++++|.+.+.+|..
T Consensus       323 l~~L~~L~Ls~--------n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~~~l~~L~~L~Ls~N~l~~~l~~~  393 (520)
T 2z7x_B          323 ISPFLHLDFSN--------NLLTDTVFENCGHLTELETLILQMNQLKELSK-IAEMTTQMKSLQQLDISQNSVSYDEKKG  393 (520)
T ss_dssp             CCCCCEEECCS--------SCCCTTTTTTCCCCSSCCEEECCSSCCCBHHH-HHHHHTTCTTCCEEECCSSCCBCCGGGC
T ss_pred             CCcccEEEeEC--------CccChhhhhhhccCCCCCEEEccCCccCcccc-chHHHhhCCCCCEEECCCCcCCcccccc
Confidence            34667777777        47777677777777888888888887765  2 4566777778888888888777545543


Q ss_pred             -CCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCccccc
Q 044082          127 -LGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMN  205 (243)
Q Consensus       127 -l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~  205 (243)
                       +..+++|++|++++|.+++..|..+.  ++|++|++++|.++..|.   .+..+++|++|++++|.++.++.  ..+..
T Consensus       394 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~---~~~~l~~L~~L~L~~N~l~~l~~--~~~~~  466 (520)
T 2z7x_B          394 DCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPK---QVVKLEALQELNVASNQLKSVPD--GIFDR  466 (520)
T ss_dssp             SCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCG---GGGGCTTCCEEECCSSCCCCCCT--TTTTT
T ss_pred             hhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccch---hhhcCCCCCEEECCCCcCCccCH--HHhcc
Confidence             66777788888888877766655444  677788888887776654   45577778888888887776554  23455


Q ss_pred             CCCCCcEEECCCCccccccc
Q 044082          206 SSTSLALLDLSSCGLSNSAY  225 (243)
Q Consensus       206 ~~~~L~~L~L~~n~i~~~~~  225 (243)
                      + ++|+.|++++|.++...+
T Consensus       467 l-~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          467 L-TSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             C-TTCCEEECCSSCBCCCHH
T ss_pred             C-CcccEEECcCCCCcccCC
Confidence            5 778888888887776443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.78  E-value=1.8e-18  Score=159.08  Aligned_cols=167  Identities=20%  Similarity=0.188  Sum_probs=139.6

Q ss_pred             CCceEEEecCCCCCCCCCCCCccccc-chhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcC-
Q 044082           49 TGHVIMLNLKYKVDPVCPNRPLRGNI-NSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQ-  126 (243)
Q Consensus        49 ~~~l~~L~l~~~~~~~~~~~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-  126 (243)
                      ..+++.|||++|        .+.+.+ |..+.++++|++|++++|.+... .|..+..+++|++|++++|.+.+..|.. 
T Consensus        47 l~~L~~LdLs~n--------~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~  117 (844)
T 3j0a_A           47 LEQLQLLELGSQ--------YTPLTIDKEAFRNLPNLRILDLGSSKIYFL-HPDAFQGLFHLFELRLYFCGLSDAVLKDG  117 (844)
T ss_dssp             CCSCSEEEECTT--------CCCCEECTTTTSSCTTCCEEECTTCCCCEE-CTTSSCSCSSCCCEECTTCCCSSCCSTTC
T ss_pred             cccCeEEeCCCC--------CCccccCHHHhcCCCCCCEEECCCCcCccc-CHhHccCCcccCEeeCcCCCCCcccccCc
Confidence            468999999994        566666 77899999999999999999986 7999999999999999999999766665 


Q ss_pred             -CCCCCCCcEEEccCCccccCCc-cccCCCCCCCEEEcCCccccCC-cchHHHhhcc--ccccccccccccCCCCCCCCc
Q 044082          127 -LGNLTNLQSLNLGYNSLYVSKF-GWLSHLNKLTQLDLDFVDLSEA-SDWLQVITSL--ASLRDLYLASSTLPSINRPSL  201 (243)
Q Consensus       127 -l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~~  201 (243)
                       ++.+++|++|++++|.+++..+ ..++.+++|++|++++|.+... +.   .+..+  ++|+.|++++|.+.+..+  .
T Consensus       118 ~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~---~l~~l~~~~L~~L~L~~n~l~~~~~--~  192 (844)
T 3j0a_A          118 YFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH---ELEPLQGKTLSFFSLAANSLYSRVS--V  192 (844)
T ss_dssp             CCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSG---GGHHHHHCSSCCCEECCSBSCCCCC--C
T ss_pred             cccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHH---HcccccCCccceEECCCCccccccc--c
Confidence             8899999999999999987654 5789999999999999999887 33   55555  799999999999988766  4


Q ss_pred             ccccCCC------CCcEEECCCCccccccchhHHh
Q 044082          202 SSMNSST------SLALLDLSSCGLSNSAYHWLFK  230 (243)
Q Consensus       202 ~~~~~~~------~L~~L~L~~n~i~~~~~~~l~~  230 (243)
                      .+..+ .      +|+.|++++|.+++..+..+..
T Consensus       193 ~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~  226 (844)
T 3j0a_A          193 DWGKC-MNPFRNMVLEILDVSGNGWTVDITGNFSN  226 (844)
T ss_dssp             CCCSS-SCTTTTCCBSEEBCSSCCSSTTTTSGGGG
T ss_pred             chhhc-CCccccCceeEEecCCCcCchhHHHHHHh
Confidence            44443 3      4999999999887766655543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.78  E-value=1.8e-18  Score=153.66  Aligned_cols=154  Identities=26%  Similarity=0.199  Sum_probs=131.1

Q ss_pred             ccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccC
Q 044082           73 NINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLS  152 (243)
Q Consensus        73 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~  152 (243)
                      .+|..+.  +++++|+|++|.++.. .+..|..+++|++|++++|.+++..+..|+.+++|++|++++|+++...+..|.
T Consensus        45 ~vP~~lp--~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~  121 (635)
T 4g8a_A           45 KIPDNLP--FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS  121 (635)
T ss_dssp             SCCSSSC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGT
T ss_pred             ccCCCCC--cCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhc
Confidence            3554432  4799999999999985 567899999999999999999966677899999999999999999987778899


Q ss_pred             CCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhh
Q 044082          153 HLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKIS  232 (243)
Q Consensus       153 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~  232 (243)
                      ++++|++|++++|.++..+.  ..+..+++|++|++++|.++..... ..+..+ ++|++|++++|++++..+..+..+.
T Consensus       122 ~L~~L~~L~Ls~N~l~~l~~--~~~~~L~~L~~L~Ls~N~l~~~~~~-~~~~~l-~~L~~L~L~~N~l~~~~~~~l~~L~  197 (635)
T 4g8a_A          122 GLSSLQKLVAVETNLASLEN--FPIGHLKTLKELNVAHNLIQSFKLP-EYFSNL-TNLEHLDLSSNKIQSIYCTDLRVLH  197 (635)
T ss_dssp             TCTTCCEEECTTSCCCCSTT--CCCTTCTTCCEEECCSSCCCCCCCC-GGGGGC-TTCCEEECCSSCCCEECGGGGHHHH
T ss_pred             CCCCCCEEECCCCcCCCCCh--hhhhcCcccCeeccccCccccCCCc-hhhccc-hhhhhhcccCccccccccccccchh
Confidence            99999999999999999853  2688999999999999999876431 345556 9999999999999987777777776


Q ss_pred             c
Q 044082          233 S  233 (243)
Q Consensus       233 ~  233 (243)
                      +
T Consensus       198 ~  198 (635)
T 4g8a_A          198 Q  198 (635)
T ss_dssp             T
T ss_pred             h
Confidence            5

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.78  E-value=4.7e-20  Score=152.20  Aligned_cols=180  Identities=22%  Similarity=0.220  Sum_probs=140.1

Q ss_pred             CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCC
Q 044082           50 GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN  129 (243)
Q Consensus        50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~  129 (243)
                      ..++.+++++        |.+.+..+. +..+++|++|++++|.++...++..+..+++|++|++++|.+.+..+..++.
T Consensus        70 ~~l~~L~l~~--------n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~  140 (336)
T 2ast_B           70 QGVIAFRCPR--------SFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK  140 (336)
T ss_dssp             TTCSEEECTT--------CEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT
T ss_pred             ccceEEEcCC--------ccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhc
Confidence            5788899998        477766554 5678999999999998765336777888999999999999888777777888


Q ss_pred             CCCCcEEEccCC-ccccC-CccccCCCCCCCEEEcCCc-cccCCcchHHHhhccc-ccccccccccc--CC-CCCCCCcc
Q 044082          130 LTNLQSLNLGYN-SLYVS-KFGWLSHLNKLTQLDLDFV-DLSEASDWLQVITSLA-SLRDLYLASST--LP-SINRPSLS  202 (243)
Q Consensus       130 l~~L~~L~l~~n-~l~~~-~~~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~-~L~~L~l~~n~--~~-~~~~~~~~  202 (243)
                      +++|++|++++| .+++. .+..+..+++|++|++++| .+++.. ++..+..++ +|++|++++|.  ++ +..+  ..
T Consensus       141 ~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~--~~  217 (336)
T 2ast_B          141 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKH-VQVAVAHVSETITQLNLSGYRKNLQKSDLS--TL  217 (336)
T ss_dssp             CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHH-HHHHHHHSCTTCCEEECCSCGGGSCHHHHH--HH
T ss_pred             CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHH-HHHHHHhcccCCCEEEeCCCcccCCHHHHH--HH
Confidence            999999999998 56652 4555777889999999999 777542 234678888 99999999984  43 1122  23


Q ss_pred             cccCCCCCcEEECCCCc-cccccchhHHhhhccCceeeCCCC
Q 044082          203 SMNSSTSLALLDLSSCG-LSNSAYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       203 ~~~~~~~L~~L~L~~n~-i~~~~~~~l~~l~~~L~~L~l~~N  243 (243)
                      +..+ ++|+.|++++|. +++..+..+..+++ |++|++++|
T Consensus       218 ~~~~-~~L~~L~l~~~~~l~~~~~~~l~~l~~-L~~L~l~~~  257 (336)
T 2ast_B          218 VRRC-PNLVHLDLSDSVMLKNDCFQEFFQLNY-LQHLSLSRC  257 (336)
T ss_dssp             HHHC-TTCSEEECTTCTTCCGGGGGGGGGCTT-CCEEECTTC
T ss_pred             HhhC-CCCCEEeCCCCCcCCHHHHHHHhCCCC-CCEeeCCCC
Confidence            4455 899999999998 77777888888888 999999876

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.78  E-value=2.7e-19  Score=146.39  Aligned_cols=174  Identities=20%  Similarity=0.133  Sum_probs=138.4

Q ss_pred             CCceEEEecCCCCCCCCCCCCcccccc----hhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCcccccc--
Q 044082           49 TGHVIMLNLKYKVDPVCPNRPLRGNIN----SSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGR--  122 (243)
Q Consensus        49 ~~~l~~L~l~~~~~~~~~~~~~~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~--  122 (243)
                      ..+++.|++++        |.+.+..+    ..+..+++|++|++++|.++.. .+..+..+++|++|++++|.+.+.  
T Consensus       116 ~~~L~~L~Ls~--------n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~  186 (310)
T 4glp_A          116 GLALSSLRLRN--------VSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAF-SCEQVRAFPALTSLDLSDNPGLGERG  186 (310)
T ss_dssp             CBCCSSCEEES--------CCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCC-CTTSCCCCTTCCEEECCSCTTCHHHH
T ss_pred             CCCCCEEEeec--------ccccchhhhhHHHHhhhccCCCEEEeeCCCcchh-hHHHhccCCCCCEEECCCCCCccchh
Confidence            45788899999        57776544    3456799999999999999886 778899999999999999987642  


Q ss_pred             C--CcCCCCCCCCcEEEccCCccccCCc--c-ccCCCCCCCEEEcCCccccCC-cchHHHhhcc---ccccccccccccC
Q 044082          123 I--PYQLGNLTNLQSLNLGYNSLYVSKF--G-WLSHLNKLTQLDLDFVDLSEA-SDWLQVITSL---ASLRDLYLASSTL  193 (243)
Q Consensus       123 ~--~~~l~~l~~L~~L~l~~n~l~~~~~--~-~l~~l~~L~~L~l~~n~l~~~-~~~~~~~~~l---~~L~~L~l~~n~~  193 (243)
                      .  +..++.+++|++|++++|.++....  . .+..+++|++|++++|.+.+. |.   .+..+   ++|++|++++|.+
T Consensus       187 ~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~---~~~~~~~~~~L~~L~Ls~N~l  263 (310)
T 4glp_A          187 LMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNP---SAPRCMWSSALNSLNLSFAGL  263 (310)
T ss_dssp             HHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCS---CCSSCCCCTTCCCEECCSSCC
T ss_pred             hhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchh---hHHhccCcCcCCEEECCCCCC
Confidence            2  2334688999999999999974221  1 246789999999999999987 54   44444   7999999999999


Q ss_pred             CCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082          194 PSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       194 ~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N  243 (243)
                      +.++.   .+  . ++|+.|++++|++++ +|. +..+++ |++|++++|
T Consensus       264 ~~lp~---~~--~-~~L~~L~Ls~N~l~~-~~~-~~~l~~-L~~L~L~~N  304 (310)
T 4glp_A          264 EQVPK---GL--P-AKLRVLDLSSNRLNR-APQ-PDELPE-VDNLTLDGN  304 (310)
T ss_dssp             CSCCS---CC--C-SCCSCEECCSCCCCS-CCC-TTSCCC-CSCEECSST
T ss_pred             Cchhh---hh--c-CCCCEEECCCCcCCC-Cch-hhhCCC-ccEEECcCC
Confidence            96543   33  2 789999999999996 343 567788 999999987

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.77  E-value=4.9e-19  Score=153.45  Aligned_cols=129  Identities=19%  Similarity=0.163  Sum_probs=91.9

Q ss_pred             CCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccC-CCCCCCEEEcCCccccCCcchHHHhhccccc
Q 044082          105 FFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLS-HLNKLTQLDLDFVDLSEASDWLQVITSLASL  183 (243)
Q Consensus       105 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L  183 (243)
                      .+++|++|++++|.+.+..|..++.+++|++|++++|.+++..|..+. .+++|++|++++|.+++.+.    ...+++|
T Consensus       118 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~----~~~l~~L  193 (487)
T 3oja_A          118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG----QVVFAKL  193 (487)
T ss_dssp             CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC----CCCCTTC
T ss_pred             ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc----cccCCCC
Confidence            456777788888777766666777777788888888777776666664 57777777887777776642    2346777


Q ss_pred             cccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082          184 RDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       184 ~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N  243 (243)
                      +.|++++|.+++.++   .+..+ ++|+.|++++|.+++ +|..+..+++ |+.|++++|
T Consensus       194 ~~L~Ls~N~l~~~~~---~~~~l-~~L~~L~Ls~N~l~~-lp~~l~~l~~-L~~L~l~~N  247 (487)
T 3oja_A          194 KTLDLSSNKLAFMGP---EFQSA-AGVTWISLRNNKLVL-IEKALRFSQN-LEHFDLRGN  247 (487)
T ss_dssp             CEEECCSSCCCEECG---GGGGG-TTCSEEECTTSCCCE-ECTTCCCCTT-CCEEECTTC
T ss_pred             CEEECCCCCCCCCCH---hHcCC-CCccEEEecCCcCcc-cchhhccCCC-CCEEEcCCC
Confidence            777777777776554   45555 777777777777773 6666666676 777777766

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.77  E-value=4.3e-18  Score=150.82  Aligned_cols=165  Identities=22%  Similarity=0.244  Sum_probs=120.5

Q ss_pred             CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCC
Q 044082           50 GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN  129 (243)
Q Consensus        50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~  129 (243)
                      ..++.|+++++        .+.. ++ .+..+++|+.|+|++|.+...  +. +..+++|+.|++++|.+.+ ++ .+..
T Consensus        43 ~~L~~L~l~~n--------~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~--~~-l~~l~~L~~L~Ls~N~l~~-l~-~l~~  107 (605)
T 1m9s_A           43 NSIDQIIANNS--------DIKS-VQ-GIQYLPNVTKLFLNGNKLTDI--KP-LTNLKNLGWLFLDENKIKD-LS-SLKD  107 (605)
T ss_dssp             TTCCCCBCTTC--------CCCC-CT-TGGGCTTCCEEECTTSCCCCC--GG-GGGCTTCCEEECCSSCCCC-CT-TSTT
T ss_pred             CCCCEEECcCC--------CCCC-Ch-HHccCCCCCEEEeeCCCCCCC--hh-hccCCCCCEEECcCCCCCC-Ch-hhcc
Confidence            45777777773        5543 33 477788888888888888773  33 7788888888888888773 33 5777


Q ss_pred             CCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCC
Q 044082          130 LTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTS  209 (243)
Q Consensus       130 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~  209 (243)
                      +++|++|++++|.+...  ..+..+++|+.|++++|.+.+.+    .+..+++|+.|+|++|.+.+..+    +..+ ++
T Consensus       108 l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l~----~l~~l~~L~~L~Ls~N~l~~~~~----l~~l-~~  176 (605)
T 1m9s_A          108 LKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDIT----VLSRLTKLDTLSLEDNQISDIVP----LAGL-TK  176 (605)
T ss_dssp             CTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCCG----GGGSCTTCSEEECCSSCCCCCGG----GTTC-TT
T ss_pred             CCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCch----hhcccCCCCEEECcCCcCCCchh----hccC-CC
Confidence            88888888888887753  34777888888888888887763    56777888888888888876533    4555 78


Q ss_pred             CcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082          210 LALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       210 L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N  243 (243)
                      |+.|+|++|.|++ ++ .+..+++ |+.|+|++|
T Consensus       177 L~~L~Ls~N~i~~-l~-~l~~l~~-L~~L~L~~N  207 (605)
T 1m9s_A          177 LQNLYLSKNHISD-LR-ALAGLKN-LDVLELFSQ  207 (605)
T ss_dssp             CCEEECCSSCCCB-CG-GGTTCTT-CSEEECCSE
T ss_pred             CCEEECcCCCCCC-Ch-HHccCCC-CCEEEccCC
Confidence            8888888888875 33 4777777 888888765

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.77  E-value=1.4e-19  Score=163.73  Aligned_cols=203  Identities=18%  Similarity=0.090  Sum_probs=95.9

Q ss_pred             HHHHHHHHHhhhcc-cCCCCCCCCCCCCCCCCCCcccceEEecCCCCceEEEecCCCCCCCCCCCCcccccchhhccCCC
Q 044082            5 EKERQALLMFKQGL-VDDCGYLSSWGSDEGRKDCCKWSGVQCSNRTGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQH   83 (243)
Q Consensus         5 ~~~~~~l~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~c~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~   83 (243)
                      +.++++++++..+. +..+.....|..  .......|.++.+..  ++++.|+|.++        .+.. .+..+.....
T Consensus       131 ~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~s~--~~~~~l~L~~n--------~~~~-~~~~~l~~l~  197 (727)
T 4b8c_D          131 DCTKQALMEMADTLTDSKTAKKQQPTG--DSTPSGTATNSAVST--PLTPKIELFAN--------GKDE-ANQALLQHKK  197 (727)
T ss_dssp             -CCCHHHHHHHHHHHHHHTTC-----------------------------------------------------------
T ss_pred             ccchhhhhhhhhhcccccCcccCCCcC--CCCccccCCCceecC--CccceEEeeCC--------CCCc-chhhHhhcCc
Confidence            34678889988887 444444456753  445567898887754  67888998874        4443 2222222222


Q ss_pred             CcEE-----EccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCC
Q 044082           84 LNYL-----DLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLT  158 (243)
Q Consensus        84 L~~L-----~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  158 (243)
                      |+.+     ++..|.+..  .+..+..++.|+.|++++|.+. .+|..+..+++|++|++++|.++ .+|..++.+++|+
T Consensus       198 Ls~~~i~~~~~~~n~~~~--~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~  273 (727)
T 4b8c_D          198 LSQYSIDEDDDIENRMVM--PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLR  273 (727)
T ss_dssp             --------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCC
T ss_pred             cCcccccCccccccceec--ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCC
Confidence            2222     222233331  4566677777777777777776 66666667777777777777776 5566677777777


Q ss_pred             EEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhh
Q 044082          159 QLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKI  231 (243)
Q Consensus       159 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l  231 (243)
                      +|+|++|.++.+|.   .+..+++|++|+|++|.++.++.   .+..+ ++|+.|+|++|.|++.+|..+...
T Consensus       274 ~L~Ls~N~l~~lp~---~~~~l~~L~~L~L~~N~l~~lp~---~~~~l-~~L~~L~L~~N~l~~~~p~~~~~~  339 (727)
T 4b8c_D          274 VLDLSHNRLTSLPA---ELGSCFQLKYFYFFDNMVTTLPW---EFGNL-CNLQFLGVEGNPLEKQFLKILTEK  339 (727)
T ss_dssp             EEECTTSCCSSCCS---SGGGGTTCSEEECCSSCCCCCCS---STTSC-TTCCCEECTTSCCCSHHHHHHHHH
T ss_pred             EEeCcCCcCCccCh---hhcCCCCCCEEECCCCCCCccCh---hhhcC-CCccEEeCCCCccCCCChHHHhhc
Confidence            77777777775554   56677777777777777764433   45555 777777777777776666665443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.76  E-value=3e-18  Score=137.00  Aligned_cols=147  Identities=20%  Similarity=0.181  Sum_probs=114.6

Q ss_pred             CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCC
Q 044082           50 GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN  129 (243)
Q Consensus        50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~  129 (243)
                      .+++.|++++|        .+.. ++ .+..+++|++|++++|.++.  ++. +..+++|++|++++|.+.+ +|... .
T Consensus        41 ~~L~~L~l~~n--------~i~~-l~-~l~~l~~L~~L~L~~N~i~~--~~~-l~~l~~L~~L~L~~N~l~~-l~~~~-~  105 (263)
T 1xeu_A           41 SGVQNFNGDNS--------NIQS-LA-GMQFFTNLKELHLSHNQISD--LSP-LKDLTKLEELSVNRNRLKN-LNGIP-S  105 (263)
T ss_dssp             TTCSEEECTTS--------CCCC-CT-TGGGCTTCCEEECCSSCCCC--CGG-GTTCSSCCEEECCSSCCSC-CTTCC-C
T ss_pred             CcCcEEECcCC--------Cccc-ch-HHhhCCCCCEEECCCCccCC--Chh-hccCCCCCEEECCCCccCC-cCccc-c
Confidence            57888888884        6553 44 67888899999999998887  444 8888899999999998884 44432 3


Q ss_pred             CCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCC
Q 044082          130 LTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTS  209 (243)
Q Consensus       130 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~  209 (243)
                       ++|++|++++|.+++.  ..+..+++|+.|++++|.+++.+    .+..+++|++|++++|.+.+.    ..+..+ ++
T Consensus       106 -~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~----~l~~l~~L~~L~L~~N~i~~~----~~l~~l-~~  173 (263)
T 1xeu_A          106 -ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV----MLGFLSKLEVLDLHGNEITNT----GGLTRL-KK  173 (263)
T ss_dssp             -SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG----GGGGCTTCCEEECTTSCCCBC----TTSTTC-CC
T ss_pred             -CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh----HHccCCCCCEEECCCCcCcch----HHhccC-CC
Confidence             8889999999988764  34788888999999999888874    567788899999999988876    245556 88


Q ss_pred             CcEEECCCCccccc
Q 044082          210 LALLDLSSCGLSNS  223 (243)
Q Consensus       210 L~~L~L~~n~i~~~  223 (243)
                      |+.|++++|.+++.
T Consensus       174 L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          174 VNWIDLTGQKCVNE  187 (263)
T ss_dssp             CCEEEEEEEEEECC
T ss_pred             CCEEeCCCCcccCC
Confidence            89999999888754

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.76  E-value=1.3e-17  Score=143.65  Aligned_cols=148  Identities=30%  Similarity=0.368  Sum_probs=96.7

Q ss_pred             hhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCC
Q 044082           77 SLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNK  156 (243)
Q Consensus        77 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~  156 (243)
                      .+..+++|++|++++|.++..  +. +..+++|++|++++|.+.+..+  +..+++|++|++++|.+++..+  +..+++
T Consensus       238 ~l~~l~~L~~L~l~~n~l~~~--~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~  310 (466)
T 1o6v_A          238 TLASLTNLTDLDLANNQISNL--AP-LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKN  310 (466)
T ss_dssp             GGGGCTTCSEEECCSSCCCCC--GG-GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTT
T ss_pred             hhhcCCCCCEEECCCCccccc--hh-hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCC
Confidence            455666666666666666553  22 5666666666666666663322  5566677777777776665433  566677


Q ss_pred             CCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCc
Q 044082          157 LTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLL  236 (243)
Q Consensus       157 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~  236 (243)
                      |+.|++++|.+.+.+.    +..+++|+.|++++|.+++.    ..+..+ ++|+.|++++|++++..|  +..+++ |+
T Consensus       311 L~~L~L~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~----~~l~~l-~~L~~L~l~~n~l~~~~~--~~~l~~-L~  378 (466)
T 1o6v_A          311 LTYLTLYFNNISDISP----VSSLTKLQRLFFYNNKVSDV----SSLANL-TNINWLSAGHNQISDLTP--LANLTR-IT  378 (466)
T ss_dssp             CSEEECCSSCCSCCGG----GGGCTTCCEEECCSSCCCCC----GGGTTC-TTCCEEECCSSCCCBCGG--GTTCTT-CC
T ss_pred             CCEEECcCCcCCCchh----hccCccCCEeECCCCccCCc----hhhccC-CCCCEEeCCCCccCccch--hhcCCC-CC
Confidence            7777777777766632    45667777777777777664    245555 778888888888876555  677777 88


Q ss_pred             eeeCCCC
Q 044082          237 ALDLNSN  243 (243)
Q Consensus       237 ~L~l~~N  243 (243)
                      +|++++|
T Consensus       379 ~L~l~~n  385 (466)
T 1o6v_A          379 QLGLNDQ  385 (466)
T ss_dssp             EEECCCE
T ss_pred             EEeccCC
Confidence            8887765

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.75  E-value=1.2e-19  Score=152.74  Aligned_cols=184  Identities=18%  Similarity=0.150  Sum_probs=117.5

Q ss_pred             CceEEEecCCCCCCCCCCCCccc----ccchhhccCCCCcEEEccCCCCCCC---CcchhhcCC---------CCCcEEe
Q 044082           50 GHVIMLNLKYKVDPVCPNRPLRG----NINSSLLELQHLNYLDLSVNDFLGN---PIPEFIGFF---------TKLRFLD  113 (243)
Q Consensus        50 ~~l~~L~l~~~~~~~~~~~~~~~----~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~~l---------~~L~~L~  113 (243)
                      .+++.|+|++        |.+.+    .++..+..+++|++|++++|.++..   .++..+..+         ++|++|+
T Consensus        94 ~~L~~L~Ls~--------n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~  165 (386)
T 2ca6_A           94 PKLHTVRLSD--------NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSII  165 (386)
T ss_dssp             TTCCEEECCS--------CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEE
T ss_pred             CcccEEECCC--------CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEE
Confidence            4555666665        35554    3555666667777777777666432   012222233         6777777


Q ss_pred             cCCcccc-ccCC---cCCCCCCCCcEEEccCCcccc-----CCccccCCCCCCCEEEcCCccccCC--cchHHHhhcccc
Q 044082          114 LSLANFS-GRIP---YQLGNLTNLQSLNLGYNSLYV-----SKFGWLSHLNKLTQLDLDFVDLSEA--SDWLQVITSLAS  182 (243)
Q Consensus       114 l~~~~~~-~~~~---~~l~~l~~L~~L~l~~n~l~~-----~~~~~l~~l~~L~~L~l~~n~l~~~--~~~~~~~~~l~~  182 (243)
                      +++|.+. +.++   ..+..+++|++|++++|.++.     ..+..+..+++|++|++++|.+++.  ..++..+..+++
T Consensus       166 L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~  245 (386)
T 2ca6_A          166 CGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN  245 (386)
T ss_dssp             CCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTT
T ss_pred             CCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCC
Confidence            7777665 2223   244566778888888887762     2233567778888888888887532  223456778888


Q ss_pred             ccccccccccCCCCCCC--Cccc--ccCCCCCcEEECCCCcccc----ccchhH-HhhhccCceeeCCCC
Q 044082          183 LRDLYLASSTLPSINRP--SLSS--MNSSTSLALLDLSSCGLSN----SAYHWL-FKISSNLLALDLNSN  243 (243)
Q Consensus       183 L~~L~l~~n~~~~~~~~--~~~~--~~~~~~L~~L~L~~n~i~~----~~~~~l-~~l~~~L~~L~l~~N  243 (243)
                      |++|++++|.+++....  ...+  ... ++|+.|++++|.|++    .+|..+ .++++ |++|++++|
T Consensus       246 L~~L~L~~n~i~~~~~~~l~~~l~~~~~-~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~-L~~L~l~~N  313 (386)
T 2ca6_A          246 LRELGLNDCLLSARGAAAVVDAFSKLEN-IGLQTLRLQYNEIELDAVRTLKTVIDEKMPD-LLFLELNGN  313 (386)
T ss_dssp             CCEEECTTCCCCHHHHHHHHHHHHTCSS-CCCCEEECCSSCCBHHHHHHHHHHHHHHCTT-CCEEECTTS
T ss_pred             cCEEECCCCCCchhhHHHHHHHHhhccC-CCeEEEECcCCcCCHHHHHHHHHHHHhcCCC-ceEEEccCC
Confidence            88888888887654110  0122  224 889999999999986    477777 55687 999998876

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.75  E-value=1.2e-17  Score=147.05  Aligned_cols=162  Identities=22%  Similarity=0.179  Sum_probs=138.4

Q ss_pred             CCCceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCC-cchhhcCCCCCcEEecCCccccccCCc-
Q 044082           48 RTGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNP-IPEFIGFFTKLRFLDLSLANFSGRIPY-  125 (243)
Q Consensus        48 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~-  125 (243)
                      ....++.|++++        |.+.+.+|..+.++++|++|++++|.++... +|..+..+++|++|++++|.+.+.+|. 
T Consensus       351 ~l~~L~~L~l~~--------n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~  422 (562)
T 3a79_B          351 SPSSFTFLNFTQ--------NVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR  422 (562)
T ss_dssp             SCCCCCEEECCS--------SCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSC
T ss_pred             CCCCceEEECCC--------CccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChh
Confidence            346788999999        5889888999999999999999999998631 356789999999999999999975665 


Q ss_pred             CCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCccccc
Q 044082          126 QLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMN  205 (243)
Q Consensus       126 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~  205 (243)
                      .+..+++|++|++++|.+++..|..+.  ++|++|++++|.++.+|.   .+..+++|++|++++|.++.+++  ..+..
T Consensus       423 ~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~---~~~~l~~L~~L~L~~N~l~~l~~--~~~~~  495 (562)
T 3a79_B          423 TCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPK---DVTHLQALQELNVASNQLKSVPD--GVFDR  495 (562)
T ss_dssp             CCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCT---TTTSSCCCSEEECCSSCCCCCCT--TSTTT
T ss_pred             hhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccCh---hhcCCCCCCEEECCCCCCCCCCH--HHHhc
Confidence            478899999999999999887776554  789999999999998865   55689999999999999997665  33666


Q ss_pred             CCCCCcEEECCCCccccccc
Q 044082          206 SSTSLALLDLSSCGLSNSAY  225 (243)
Q Consensus       206 ~~~~L~~L~L~~n~i~~~~~  225 (243)
                      + ++|+.|++++|.++...+
T Consensus       496 l-~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          496 L-TSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             C-TTCCCEECCSCCBCCCHH
T ss_pred             C-CCCCEEEecCCCcCCCcc
Confidence            6 999999999999987654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.75  E-value=6.2e-19  Score=147.27  Aligned_cols=181  Identities=22%  Similarity=0.213  Sum_probs=82.9

Q ss_pred             ceEEEecCCCCCCCCCCCCcccccc----hhhccCC-CCcEEEccCCCCCCCCcchhhcCC-----CCCcEEecCCcccc
Q 044082           51 HVIMLNLKYKVDPVCPNRPLRGNIN----SSLLELQ-HLNYLDLSVNDFLGNPIPEFIGFF-----TKLRFLDLSLANFS  120 (243)
Q Consensus        51 ~l~~L~l~~~~~~~~~~~~~~~~~~----~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l-----~~L~~L~l~~~~~~  120 (243)
                      .++.|||++        |.+.+..+    ..+.+++ +|++|++++|.++.. .+..+..+     ++|++|++++|.+.
T Consensus        23 ~L~~L~Ls~--------n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~n~l~   93 (362)
T 3goz_A           23 GVTSLDLSL--------NNLYSISTVELIQAFANTPASVTSLNLSGNSLGFK-NSDELVQILAAIPANVTSLNLSGNFLS   93 (362)
T ss_dssp             TCCEEECTT--------SCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGS-CHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred             CceEEEccC--------CCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHH-HHHHHHHHHhccCCCccEEECcCCcCC
Confidence            355566665        34444433    4445555 555555555555543 34444332     55555555555555


Q ss_pred             ccCCcC----CCCC-CCCcEEEccCCccccCCcccc----CC-CCCCCEEEcCCccccCC--cchHHHhhccc-cccccc
Q 044082          121 GRIPYQ----LGNL-TNLQSLNLGYNSLYVSKFGWL----SH-LNKLTQLDLDFVDLSEA--SDWLQVITSLA-SLRDLY  187 (243)
Q Consensus       121 ~~~~~~----l~~l-~~L~~L~l~~n~l~~~~~~~l----~~-l~~L~~L~l~~n~l~~~--~~~~~~~~~l~-~L~~L~  187 (243)
                      +..+..    +..+ ++|++|++++|.++...+..+    .. ..+|++|++++|.+.+.  ..++..+..++ +|++|+
T Consensus        94 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~  173 (362)
T 3goz_A           94 YKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLN  173 (362)
T ss_dssp             GSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEE
T ss_pred             hHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEee
Confidence            433332    2222 455555555555554433222    12 23555555555555543  12223333333 555555


Q ss_pred             cccccCCCCCCCCcccc----cCCCCCcEEECCCCccccc----cchhHHhhh-ccCceeeCCCC
Q 044082          188 LASSTLPSINRPSLSSM----NSSTSLALLDLSSCGLSNS----AYHWLFKIS-SNLLALDLNSN  243 (243)
Q Consensus       188 l~~n~~~~~~~~~~~~~----~~~~~L~~L~L~~n~i~~~----~~~~l~~l~-~~L~~L~l~~N  243 (243)
                      +++|.+++..+  ..+.    ...++|+.|++++|.|++.    ++..+.... + |++|++++|
T Consensus       174 Ls~n~l~~~~~--~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~-L~~L~Ls~N  235 (362)
T 3goz_A          174 LRGNNLASKNC--AELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNH-VVSLNLCLN  235 (362)
T ss_dssp             CTTSCGGGSCH--HHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTT-CCEEECCSS
T ss_pred             ecCCCCchhhH--HHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCC-ceEEECcCC
Confidence            55555544332  1111    1102555555555555432    233333322 3 555555544

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.74  E-value=3.5e-17  Score=141.05  Aligned_cols=147  Identities=29%  Similarity=0.299  Sum_probs=99.4

Q ss_pred             hccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCC
Q 044082           78 LLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKL  157 (243)
Q Consensus        78 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  157 (243)
                      ++.+++|+.|++++|.++.  + +.+..+++|++|++++|.+.+..+  +..+++|++|++++|.+++..+  +..+++|
T Consensus       217 ~~~l~~L~~L~l~~n~l~~--~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L  289 (466)
T 1o6v_A          217 LGILTNLDELSLNGNQLKD--I-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTAL  289 (466)
T ss_dssp             GGGCTTCCEEECCSSCCCC--C-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTC
T ss_pred             ccccCCCCEEECCCCCccc--c-hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCcc
Confidence            4556666666666666554  2 245666677777777776664333  5667777777777777765433  6667777


Q ss_pred             CEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCce
Q 044082          158 TQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLA  237 (243)
Q Consensus       158 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~  237 (243)
                      +.|++++|.+.+.+    .+..+++|++|++++|.+++..+    +..+ ++|+.|++++|.+++.  ..+..+++ |++
T Consensus       290 ~~L~L~~n~l~~~~----~~~~l~~L~~L~L~~n~l~~~~~----~~~l-~~L~~L~l~~n~l~~~--~~l~~l~~-L~~  357 (466)
T 1o6v_A          290 TNLELNENQLEDIS----PISNLKNLTYLTLYFNNISDISP----VSSL-TKLQRLFFYNNKVSDV--SSLANLTN-INW  357 (466)
T ss_dssp             SEEECCSSCCSCCG----GGGGCTTCSEEECCSSCCSCCGG----GGGC-TTCCEEECCSSCCCCC--GGGTTCTT-CCE
T ss_pred             CeEEcCCCcccCch----hhcCCCCCCEEECcCCcCCCchh----hccC-ccCCEeECCCCccCCc--hhhccCCC-CCE
Confidence            77777777777664    25667778888888887776543    4455 7888888888888753  35777777 888


Q ss_pred             eeCCCC
Q 044082          238 LDLNSN  243 (243)
Q Consensus       238 L~l~~N  243 (243)
                      |++++|
T Consensus       358 L~l~~n  363 (466)
T 1o6v_A          358 LSAGHN  363 (466)
T ss_dssp             EECCSS
T ss_pred             EeCCCC
Confidence            888776

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.74  E-value=2.2e-19  Score=151.18  Aligned_cols=185  Identities=21%  Similarity=0.198  Sum_probs=106.6

Q ss_pred             CceEEEecCCCCCCCCCCCCcccccchhh-------ccCCCCcEEEccCCCCCCC---CcchhhcCCCCCcEEecCCccc
Q 044082           50 GHVIMLNLKYKVDPVCPNRPLRGNINSSL-------LELQHLNYLDLSVNDFLGN---PIPEFIGFFTKLRFLDLSLANF  119 (243)
Q Consensus        50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~-------~~l~~L~~L~l~~n~l~~~---~~~~~~~~l~~L~~L~l~~~~~  119 (243)
                      .+++.|+|++|.     .+.+.+.+|..+       ..+++|++|++++|.+...   .++..+..+++|++|++++|.+
T Consensus        60 ~~L~~L~Ls~~~-----~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l  134 (386)
T 2ca6_A           60 KDLEIAEFSDIF-----TGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL  134 (386)
T ss_dssp             TTCCEEECCSCC-----TTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred             CCccEEeCcccc-----cCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCC
Confidence            456666666531     123444445444       5667777777777776652   1455666677777777777766


Q ss_pred             cccCCcCCC----CC---------CCCcEEEccCCcccc-CCc---cccCCCCCCCEEEcCCccccCC--cchHH-Hhhc
Q 044082          120 SGRIPYQLG----NL---------TNLQSLNLGYNSLYV-SKF---GWLSHLNKLTQLDLDFVDLSEA--SDWLQ-VITS  179 (243)
Q Consensus       120 ~~~~~~~l~----~l---------~~L~~L~l~~n~l~~-~~~---~~l~~l~~L~~L~l~~n~l~~~--~~~~~-~~~~  179 (243)
                      .+..+..+.    .+         ++|++|++++|+++. ..+   ..+..+++|++|++++|.+...  ..+.. .+..
T Consensus       135 ~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~  214 (386)
T 2ca6_A          135 GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY  214 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGG
T ss_pred             CHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhc
Confidence            533332222    22         667777777776652 222   2345566777777777766632  11222 5556


Q ss_pred             cccccccccccccCC----CCCCCCcccccCCCCCcEEECCCCccccc----cchhHHh--hhccCceeeCCCC
Q 044082          180 LASLRDLYLASSTLP----SINRPSLSSMNSSTSLALLDLSSCGLSNS----AYHWLFK--ISSNLLALDLNSN  243 (243)
Q Consensus       180 l~~L~~L~l~~n~~~----~~~~~~~~~~~~~~~L~~L~L~~n~i~~~----~~~~l~~--l~~~L~~L~l~~N  243 (243)
                      +++|++|++++|.++    ...+  ..+..+ ++|+.|+|++|.|++.    ++..+..  +++ |++|++++|
T Consensus       215 ~~~L~~L~Ls~n~l~~~g~~~l~--~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~-L~~L~L~~n  284 (386)
T 2ca6_A          215 CQELKVLDLQDNTFTHLGSSALA--IALKSW-PNLRELGLNDCLLSARGAAAVVDAFSKLENIG-LQTLRLQYN  284 (386)
T ss_dssp             CTTCCEEECCSSCCHHHHHHHHH--HHGGGC-TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCC-CCEEECCSS
T ss_pred             CCCccEEECcCCCCCcHHHHHHH--HHHccC-CCcCEEECCCCCCchhhHHHHHHHHhhccCCC-eEEEECcCC
Confidence            677777777777664    2222  234445 7777777777777654    3444433  566 777777765

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.74  E-value=2.1e-17  Score=134.04  Aligned_cols=147  Identities=26%  Similarity=0.291  Sum_probs=127.6

Q ss_pred             hccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCC
Q 044082           78 LLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKL  157 (243)
Q Consensus        78 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  157 (243)
                      +..+++|+.|++++|.+..  ++ .+..+++|++|++++|.+.+..+  +..+++|++|++++|.++..  ..+..+++|
T Consensus        42 ~~~l~~L~~L~l~~~~i~~--~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L  114 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKL  114 (291)
T ss_dssp             HHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTC
T ss_pred             hhhcCcccEEEccCCCccc--Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCC
Confidence            5678999999999999987  44 48889999999999999995443  88999999999999999863  348999999


Q ss_pred             CEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCce
Q 044082          158 TQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLA  237 (243)
Q Consensus       158 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~  237 (243)
                      ++|++++|.+.+.+    .+..+++|++|++++|.+++.    ..+..+ ++|+.|++++|.+++..+  +..+++ |++
T Consensus       115 ~~L~L~~n~i~~~~----~l~~l~~L~~L~l~~n~l~~~----~~l~~l-~~L~~L~L~~N~l~~~~~--l~~l~~-L~~  182 (291)
T 1h6t_A          115 KSLSLEHNGISDIN----GLVHLPQLESLYLGNNKITDI----TVLSRL-TKLDTLSLEDNQISDIVP--LAGLTK-LQN  182 (291)
T ss_dssp             CEEECTTSCCCCCG----GGGGCTTCCEEECCSSCCCCC----GGGGGC-TTCSEEECCSSCCCCCGG--GTTCTT-CCE
T ss_pred             CEEECCCCcCCCCh----hhcCCCCCCEEEccCCcCCcc----hhhccC-CCCCEEEccCCccccchh--hcCCCc-cCE
Confidence            99999999999874    577899999999999999876    356677 999999999999996444  888898 999


Q ss_pred             eeCCCC
Q 044082          238 LDLNSN  243 (243)
Q Consensus       238 L~l~~N  243 (243)
                      |++++|
T Consensus       183 L~L~~N  188 (291)
T 1h6t_A          183 LYLSKN  188 (291)
T ss_dssp             EECCSS
T ss_pred             EECCCC
Confidence            999987

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.73  E-value=5.2e-17  Score=139.64  Aligned_cols=163  Identities=20%  Similarity=0.152  Sum_probs=93.0

Q ss_pred             CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCC
Q 044082           50 GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN  129 (243)
Q Consensus        50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~  129 (243)
                      .+++.|++++        |.+++. | .++.+++|++|++++|.+++  +|  ++.+++|++|++++|.+.+. +  ++.
T Consensus        42 ~~L~~L~Ls~--------n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~--~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~  104 (457)
T 3bz5_A           42 ATLTSLDCHN--------SSITDM-T-GIEKLTGLTKLICTSNNITT--LD--LSQNTNLTYLACDSNKLTNL-D--VTP  104 (457)
T ss_dssp             TTCCEEECCS--------SCCCCC-T-TGGGCTTCSEEECCSSCCSC--CC--CTTCTTCSEEECCSSCCSCC-C--CTT
T ss_pred             CCCCEEEccC--------CCcccC-h-hhcccCCCCEEEccCCcCCe--Ec--cccCCCCCEEECcCCCCcee-e--cCC
Confidence            4566777776        355542 3 46666666666666666665  32  55666666666666666632 2  556


Q ss_pred             CCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchH------------------HHhhccccccccccccc
Q 044082          130 LTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWL------------------QVITSLASLRDLYLASS  191 (243)
Q Consensus       130 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~------------------~~~~~l~~L~~L~l~~n  191 (243)
                      +++|++|++++|.+++. +  ++.+++|++|++++|.+++.+- .                  ..+..+++|++|++++|
T Consensus       105 l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l~l-~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n  180 (457)
T 3bz5_A          105 LTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEIDV-SHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFN  180 (457)
T ss_dssp             CTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCCCC-TTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSS
T ss_pred             CCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccceecc-ccCCcCCEEECCCCCcccccccccCCcCCEEECCCC
Confidence            66666666666666542 2  5556666666666666555420 0                  01334455555555555


Q ss_pred             cCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082          192 TLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N  243 (243)
                      .+++++     +..+ ++|+.|++++|.+++.   .++.+++ |++|++++|
T Consensus       181 ~l~~l~-----l~~l-~~L~~L~l~~N~l~~~---~l~~l~~-L~~L~Ls~N  222 (457)
T 3bz5_A          181 KITELD-----VSQN-KLLNRLNCDTNNITKL---DLNQNIQ-LTFLDCSSN  222 (457)
T ss_dssp             CCCCCC-----CTTC-TTCCEEECCSSCCSCC---CCTTCTT-CSEEECCSS
T ss_pred             ccceec-----cccC-CCCCEEECcCCcCCee---ccccCCC-CCEEECcCC
Confidence            555431     3333 6666666666666642   2555666 777777665

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.73  E-value=2.9e-18  Score=143.16  Aligned_cols=174  Identities=24%  Similarity=0.222  Sum_probs=136.2

Q ss_pred             CCcccccchhhccCCCCcEEEccCCCCCCCCcc----hhhcCCC-CCcEEecCCccccccCCcCCCCC-----CCCcEEE
Q 044082           68 RPLRGNINSSLLELQHLNYLDLSVNDFLGNPIP----EFIGFFT-KLRFLDLSLANFSGRIPYQLGNL-----TNLQSLN  137 (243)
Q Consensus        68 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~l-----~~L~~L~  137 (243)
                      +.+++.+|..+...++|++|++++|.++.. .+    ..+..++ +|++|++++|.+.+..+..+..+     ++|++|+
T Consensus         8 n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~   86 (362)
T 3goz_A            8 HPGSNPVEEFTSIPHGVTSLDLSLNNLYSI-STVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLN   86 (362)
T ss_dssp             CTTCCHHHHHHTSCTTCCEEECTTSCGGGS-CHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEE
T ss_pred             ccchHHHHHHHhCCCCceEEEccCCCCChH-HHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEE
Confidence            689998888878778899999999999885 55    6788898 89999999999997766666554     8999999


Q ss_pred             ccCCccccCCccccC----CC-CCCCEEEcCCccccCCc--chHHHhhc-cccccccccccccCCCCCCC--CcccccCC
Q 044082          138 LGYNSLYVSKFGWLS----HL-NKLTQLDLDFVDLSEAS--DWLQVITS-LASLRDLYLASSTLPSINRP--SLSSMNSS  207 (243)
Q Consensus       138 l~~n~l~~~~~~~l~----~l-~~L~~L~l~~n~l~~~~--~~~~~~~~-l~~L~~L~l~~n~~~~~~~~--~~~~~~~~  207 (243)
                      +++|.++...+..+.    .. ++|++|++++|.+.+.+  .+...+.. ..+|++|++++|.++.....  ...+....
T Consensus        87 Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~  166 (362)
T 3goz_A           87 LSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIP  166 (362)
T ss_dssp             CCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSC
T ss_pred             CcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCC
Confidence            999999877665443    34 89999999999998883  22333444 36999999999999854330  01223331


Q ss_pred             CCCcEEECCCCccccccchhHHhh-----hccCceeeCCCC
Q 044082          208 TSLALLDLSSCGLSNSAYHWLFKI-----SSNLLALDLNSN  243 (243)
Q Consensus       208 ~~L~~L~L~~n~i~~~~~~~l~~l-----~~~L~~L~l~~N  243 (243)
                      ++|+.|++++|.+++..+..+...     ++ |++|++++|
T Consensus       167 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~-L~~L~Ls~N  206 (362)
T 3goz_A          167 ANVNSLNLRGNNLASKNCAELAKFLASIPAS-VTSLDLSAN  206 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHTSCTT-CCEEECTTS
T ss_pred             ccccEeeecCCCCchhhHHHHHHHHHhCCCC-CCEEECCCC
Confidence            389999999999998777666554     46 999999987

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.72  E-value=9.4e-17  Score=138.06  Aligned_cols=142  Identities=20%  Similarity=0.268  Sum_probs=71.3

Q ss_pred             hccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCC
Q 044082           78 LLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKL  157 (243)
Q Consensus        78 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  157 (243)
                      ++++++|++|++++|.++.  ++  +..+++|++|++++|.+++.   .++.+++|++|++++|...+..  .+..+++|
T Consensus       102 ~~~l~~L~~L~L~~N~l~~--l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L  172 (457)
T 3bz5_A          102 VTPLTKLTYLNCDTNKLTK--LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQL  172 (457)
T ss_dssp             CTTCTTCCEEECCSSCCSC--CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTC
T ss_pred             cCCCCcCCEEECCCCcCCe--ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcC
Confidence            4444444444444444443  22  44444455555554444431   1333444444444444222222  24455666


Q ss_pred             CEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCce
Q 044082          158 TQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLA  237 (243)
Q Consensus       158 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~  237 (243)
                      ++|++++|.+++.+     +..+++|+.|++++|.+++.     .+..+ ++|+.|++++|++++ +|  +..+++ |++
T Consensus       173 ~~L~ls~n~l~~l~-----l~~l~~L~~L~l~~N~l~~~-----~l~~l-~~L~~L~Ls~N~l~~-ip--~~~l~~-L~~  237 (457)
T 3bz5_A          173 TTLDCSFNKITELD-----VSQNKLLNRLNCDTNNITKL-----DLNQN-IQLTFLDCSSNKLTE-ID--VTPLTQ-LTY  237 (457)
T ss_dssp             CEEECCSSCCCCCC-----CTTCTTCCEEECCSSCCSCC-----CCTTC-TTCSEEECCSSCCSC-CC--CTTCTT-CSE
T ss_pred             CEEECCCCccceec-----cccCCCCCEEECcCCcCCee-----ccccC-CCCCEEECcCCcccc-cC--ccccCC-CCE
Confidence            66666666666653     34556666666666666553     13334 556666666666654 33  445555 555


Q ss_pred             eeCCCC
Q 044082          238 LDLNSN  243 (243)
Q Consensus       238 L~l~~N  243 (243)
                      |++++|
T Consensus       238 L~l~~N  243 (457)
T 3bz5_A          238 FDCSVN  243 (457)
T ss_dssp             EECCSS
T ss_pred             EEeeCC
Confidence            555554

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.70  E-value=2.5e-17  Score=136.95  Aligned_cols=169  Identities=20%  Similarity=0.162  Sum_probs=109.5

Q ss_pred             cccceEEecCCC---------CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcc-hhhcCCC
Q 044082           38 CKWSGVQCSNRT---------GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIP-EFIGFFT  107 (243)
Q Consensus        38 ~~~~~~~c~~~~---------~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~  107 (243)
                      |.+..|.|....         ..++.|+|++        |.++...+..|+++++|++|++++|.+... +| ..|..++
T Consensus         9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~--------N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~-i~~~~f~~L~   79 (350)
T 4ay9_X            9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVL--------TKLRVIQKGAFSGFGDLEKIEISQNDVLEV-IEADVFSNLP   79 (350)
T ss_dssp             EETTEEEEESTTCCSCCTTCCTTCSEEEEES--------CCCSEECTTSSTTCTTCCEEEEECCTTCCE-ECTTSBCSCT
T ss_pred             eeCCEEEecCCCCCccCcCcCCCCCEEEccC--------CcCCCcCHHHHcCCCCCCEEECcCCCCCCc-cChhHhhcch
Confidence            567888886422         4689999999        588754455789999999999999998664 44 4577888


Q ss_pred             CCcE-EecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCC--------------------------CCEE
Q 044082          108 KLRF-LDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNK--------------------------LTQL  160 (243)
Q Consensus       108 ~L~~-L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~--------------------------L~~L  160 (243)
                      ++++ +.+.+|.+....|..+..+++|++|++++|.+....+..+....+                          ++.|
T Consensus        80 ~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L  159 (350)
T 4ay9_X           80 KLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVIL  159 (350)
T ss_dssp             TCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEE
T ss_pred             hhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhh
Confidence            8765 556678888666777888899999999988876544333333333                          4455


Q ss_pred             EcCCccccCCcchHHHhhcccccccccccc-ccCCCCCCCCcccccCCCCCcEEECCCCccc
Q 044082          161 DLDFVDLSEASDWLQVITSLASLRDLYLAS-STLPSINRPSLSSMNSSTSLALLDLSSCGLS  221 (243)
Q Consensus       161 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~  221 (243)
                      ++++|.++.++.   ......+|+++.+++ |.++.++.  ..+..+ ++|+.|++++|+|+
T Consensus       160 ~L~~N~i~~i~~---~~f~~~~L~~l~l~~~n~l~~i~~--~~f~~l-~~L~~LdLs~N~l~  215 (350)
T 4ay9_X          160 WLNKNGIQEIHN---SAFNGTQLDELNLSDNNNLEELPN--DVFHGA-SGPVILDISRTRIH  215 (350)
T ss_dssp             ECCSSCCCEECT---TSSTTEEEEEEECTTCTTCCCCCT--TTTTTE-ECCSEEECTTSCCC
T ss_pred             ccccccccCCCh---hhccccchhHHhhccCCcccCCCH--HHhccC-cccchhhcCCCCcC
Confidence            555555554432   222334555555543 44444433  233444 66666666666666

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.70  E-value=2.7e-16  Score=125.68  Aligned_cols=163  Identities=25%  Similarity=0.291  Sum_probs=126.2

Q ss_pred             ceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCC
Q 044082           51 HVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNL  130 (243)
Q Consensus        51 ~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l  130 (243)
                      +++.+++++        +.+++ ++ .+..+++|++|++++|.++.  ++ .+..+++|++|++++|.+.+. +. +..+
T Consensus        20 ~l~~l~l~~--------~~i~~-~~-~~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l   84 (263)
T 1xeu_A           20 NAVKQNLGK--------QSVTD-LV-SQKELSGVQNFNGDNSNIQS--LA-GMQFFTNLKELHLSHNQISDL-SP-LKDL   84 (263)
T ss_dssp             HHHHHHHTC--------SCTTS-EE-CHHHHTTCSEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTC
T ss_pred             HHHHHHhcC--------CCccc-cc-chhhcCcCcEEECcCCCccc--ch-HHhhCCCCCEEECCCCccCCC-hh-hccC
Confidence            345566666        45554 33 57788899999999998876  45 678889999999999988854 33 7888


Q ss_pred             CCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCC
Q 044082          131 TNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSL  210 (243)
Q Consensus       131 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L  210 (243)
                      ++|++|++++|+++.. +. +.. ++|++|++++|.+++.+    .+..+++|++|++++|.+++.    ..+..+ ++|
T Consensus        85 ~~L~~L~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~~----~l~~l~~L~~L~Ls~N~i~~~----~~l~~l-~~L  152 (263)
T 1xeu_A           85 TKLEELSVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDTD----SLIHLKNLEILSIRNNKLKSI----VMLGFL-SKL  152 (263)
T ss_dssp             SSCCEEECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBSG----GGTTCTTCCEEECTTSCCCBC----GGGGGC-TTC
T ss_pred             CCCCEEECCCCccCCc-Cc-ccc-CcccEEEccCCccCCCh----hhcCcccccEEECCCCcCCCC----hHHccC-CCC
Confidence            9999999999988764 32 333 88999999999888874    477888999999999988875    245666 889


Q ss_pred             cEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082          211 ALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       211 ~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N  243 (243)
                      +.|++++|.+++.  ..+..+++ |+.|++++|
T Consensus       153 ~~L~L~~N~i~~~--~~l~~l~~-L~~L~l~~N  182 (263)
T 1xeu_A          153 EVLDLHGNEITNT--GGLTRLKK-VNWIDLTGQ  182 (263)
T ss_dssp             CEEECTTSCCCBC--TTSTTCCC-CCEEEEEEE
T ss_pred             CEEECCCCcCcch--HHhccCCC-CCEEeCCCC
Confidence            9999999999864  56778888 898888765

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.70  E-value=5.2e-17  Score=120.97  Aligned_cols=135  Identities=25%  Similarity=0.237  Sum_probs=69.5

Q ss_pred             CceEEEecCCCCCCCCCCCCcc-cccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCC
Q 044082           50 GHVIMLNLKYKVDPVCPNRPLR-GNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLG  128 (243)
Q Consensus        50 ~~l~~L~l~~~~~~~~~~~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~  128 (243)
                      ..++.|++++        |.+. +.+|..+..+++|++|++++|.++.  + ..+..+++|++|++++|.+.+.+|..+.
T Consensus        24 ~~L~~L~l~~--------n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~   92 (168)
T 2ell_A           24 AAVRELVLDN--------CKSNDGKIEGLTAEFVNLEFLSLINVGLIS--V-SNLPKLPKLKKLELSENRIFGGLDMLAE   92 (168)
T ss_dssp             TSCSEEECCS--------CBCBTTBCSSCCGGGGGCCEEEEESSCCCC--C-SSCCCCSSCCEEEEESCCCCSCCCHHHH
T ss_pred             ccCCEEECCC--------CCCChhhHHHHHHhCCCCCEEeCcCCCCCC--h-hhhccCCCCCEEECcCCcCchHHHHHHh
Confidence            3455555555        2444 4455555555555555555555544  2 4455555555555555555544444444


Q ss_pred             CCCCCcEEEccCCccccCC-ccccCCCCCCCEEEcCCccccCCcchH-HHhhccccccccccccccCCC
Q 044082          129 NLTNLQSLNLGYNSLYVSK-FGWLSHLNKLTQLDLDFVDLSEASDWL-QVITSLASLRDLYLASSTLPS  195 (243)
Q Consensus       129 ~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~-~~~~~l~~L~~L~l~~n~~~~  195 (243)
                      .+++|++|++++|.+++.. +..+..+++|++|++++|.+...+.+. ..+..+++|++|++++|.+..
T Consensus        93 ~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A           93 KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             HCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             hCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence            4555555555555555421 134555555555555555555543211 134455555555555555443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.69  E-value=1.1e-16  Score=116.89  Aligned_cols=128  Identities=20%  Similarity=0.189  Sum_probs=87.7

Q ss_pred             CCCcEEecCCcccc-ccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccc
Q 044082          107 TKLRFLDLSLANFS-GRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRD  185 (243)
Q Consensus       107 ~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~  185 (243)
                      ++|+.|++++|.+. +.+|..+..+++|++|++++|.++..  ..++.+++|++|++++|.+.+.  ++..+..+++|++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~--~~~~~~~l~~L~~   92 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGG--LEVLAEKCPNLTH   92 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSC--THHHHHHCTTCCE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccch--HHHHhhhCCCCCE
Confidence            55666666666665 55666666667777777777766654  4566777777777777777764  1235666777888


Q ss_pred             cccccccCCCCC-CCCcccccCCCCCcEEECCCCccccccc---hhHHhhhccCceeeCCC
Q 044082          186 LYLASSTLPSIN-RPSLSSMNSSTSLALLDLSSCGLSNSAY---HWLFKISSNLLALDLNS  242 (243)
Q Consensus       186 L~l~~n~~~~~~-~~~~~~~~~~~~L~~L~L~~n~i~~~~~---~~l~~l~~~L~~L~l~~  242 (243)
                      |++++|.+++.. +  ..+..+ ++|+.|++++|.+++..+   ..+..+++ |++|++++
T Consensus        93 L~ls~N~i~~~~~~--~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~~~~l~~-L~~L~l~d  149 (149)
T 2je0_A           93 LNLSGNKIKDLSTI--EPLKKL-ENLKSLDLFNCEVTNLNDYRENVFKLLPQ-LTYLDGYD  149 (149)
T ss_dssp             EECTTSCCCSHHHH--GGGGGC-TTCCEEECTTCGGGGSTTHHHHHHHHCTT-CCEETTBC
T ss_pred             EECCCCcCCChHHH--HHHhhC-CCCCEEeCcCCcccchHHHHHHHHHHCCC-cccccCCC
Confidence            888888776642 2  244555 888888888888886444   46788888 88888764

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.69  E-value=1.5e-16  Score=121.21  Aligned_cols=131  Identities=23%  Similarity=0.239  Sum_probs=110.8

Q ss_pred             EEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcch-hhcCCCCCcEEecCCccccccCCcCCCCCC
Q 044082           53 IMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPE-FIGFFTKLRFLDLSLANFSGRIPYQLGNLT  131 (243)
Q Consensus        53 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~  131 (243)
                      +.+++++        +.+. .+|..+..  ++++|++++|.++.. .+. .+..+++|++|++++|.+++..|..+..++
T Consensus        11 ~~l~~s~--------~~l~-~ip~~~~~--~l~~L~l~~n~i~~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~   78 (192)
T 1w8a_A           11 TTVDCTG--------RGLK-EIPRDIPL--HTTELLLNDNELGRI-SSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS   78 (192)
T ss_dssp             TEEECTT--------SCCS-SCCSCCCT--TCSEEECCSCCCCSB-CCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT
T ss_pred             CEEEcCC--------CCcC-cCccCCCC--CCCEEECCCCcCCcc-CCccccccCCCCCEEECCCCCCCCcCHhHcCCcc
Confidence            5789998        4663 56665543  899999999999874 333 488999999999999999988788899999


Q ss_pred             CCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCC-cchHHHhhccccccccccccccCCCCCC
Q 044082          132 NLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEA-SDWLQVITSLASLRDLYLASSTLPSINR  198 (243)
Q Consensus       132 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~  198 (243)
                      +|++|++++|++++..+..+..+++|++|++++|.+++. +.   .+..+++|++|++++|.+.+..+
T Consensus        79 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           79 HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG---SFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTT---SSTTCTTCCEEECTTCCBCCSGG
T ss_pred             cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHH---HhhcCCCCCEEEeCCCCccCcCc
Confidence            999999999999988888899999999999999999887 43   77888999999999999987644

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.69  E-value=1.9e-16  Score=140.29  Aligned_cols=149  Identities=28%  Similarity=0.320  Sum_probs=129.0

Q ss_pred             CCceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCC
Q 044082           49 TGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLG  128 (243)
Q Consensus        49 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~  128 (243)
                      ..+++.|+|++        |.+.+..+  +..+++|+.|+|++|.+..  ++ .+..+++|++|++++|.+.+ + ..+.
T Consensus        64 l~~L~~L~Ls~--------N~l~~~~~--l~~l~~L~~L~Ls~N~l~~--l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~  128 (605)
T 1m9s_A           64 LPNVTKLFLNG--------NKLTDIKP--LTNLKNLGWLFLDENKIKD--LS-SLKDLKKLKSLSLEHNGISD-I-NGLV  128 (605)
T ss_dssp             CTTCCEEECTT--------SCCCCCGG--GGGCTTCCEEECCSSCCCC--CT-TSTTCTTCCEEECTTSCCCC-C-GGGG
T ss_pred             CCCCCEEEeeC--------CCCCCChh--hccCCCCCEEECcCCCCCC--Ch-hhccCCCCCEEEecCCCCCC-C-cccc
Confidence            46899999999        47776544  8999999999999999987  44 68899999999999999985 3 4578


Q ss_pred             CCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCC
Q 044082          129 NLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSST  208 (243)
Q Consensus       129 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~  208 (243)
                      .+++|+.|++++|.++..  ..+..+++|+.|++++|.+.+.+.    +..+++|++|+|++|.+.+.    ..+..+ +
T Consensus       129 ~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~i~~l----~~l~~l-~  197 (605)
T 1m9s_A          129 HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKNHISDL----RALAGL-K  197 (605)
T ss_dssp             GCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCBC----GGGTTC-T
T ss_pred             CCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh----hccCCCCCEEECcCCCCCCC----hHHccC-C
Confidence            899999999999999875  568899999999999999988842    78899999999999999875    356667 9


Q ss_pred             CCcEEECCCCccccc
Q 044082          209 SLALLDLSSCGLSNS  223 (243)
Q Consensus       209 ~L~~L~L~~n~i~~~  223 (243)
                      +|+.|+|++|.+++.
T Consensus       198 ~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          198 NLDVLELFSQECLNK  212 (605)
T ss_dssp             TCSEEECCSEEEECC
T ss_pred             CCCEEEccCCcCcCC
Confidence            999999999999864

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.69  E-value=1.5e-18  Score=148.99  Aligned_cols=167  Identities=22%  Similarity=0.198  Sum_probs=103.0

Q ss_pred             cchhhccCCCCcEEEccCCCCCCCCc----chhhcCCCCCcEEecCCcccccc----CCcCCCCCCCCcEEEccCCcccc
Q 044082           74 INSSLLELQHLNYLDLSVNDFLGNPI----PEFIGFFTKLRFLDLSLANFSGR----IPYQLGNLTNLQSLNLGYNSLYV  145 (243)
Q Consensus        74 ~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~n~l~~  145 (243)
                      ++..+..+++|++|++++|.+.....    +..+..+++|++|++++|.+++.    ++..+..+++|++|++++|.++.
T Consensus       219 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~  298 (461)
T 1z7x_W          219 LCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD  298 (461)
T ss_dssp             HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHH
T ss_pred             HHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCch
Confidence            34455556666666666665543200    11122456666666666666532    34444556667777777776654


Q ss_pred             CCccccC-----CCCCCCEEEcCCccccCC--cchHHHhhccccccccccccccCCCCCCCCccccc----CCCCCcEEE
Q 044082          146 SKFGWLS-----HLNKLTQLDLDFVDLSEA--SDWLQVITSLASLRDLYLASSTLPSINRPSLSSMN----SSTSLALLD  214 (243)
Q Consensus       146 ~~~~~l~-----~l~~L~~L~l~~n~l~~~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~----~~~~L~~L~  214 (243)
                      ..+..+.     ..++|++|++++|.+++.  ..++..+..+++|++|++++|.+++..+  ..+..    ..++|+.|+
T Consensus       299 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~--~~l~~~l~~~~~~L~~L~  376 (461)
T 1z7x_W          299 EGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV--RELCQGLGQPGSVLRVLW  376 (461)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHH--HHHHHHHTSTTCCCCEEE
T ss_pred             HHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccH--HHHHHHHcCCCCceEEEE
Confidence            3332222     225777777777777655  2344566677888888888887765432  22222    126889999


Q ss_pred             CCCCcccc----ccchhHHhhhccCceeeCCCC
Q 044082          215 LSSCGLSN----SAYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       215 L~~n~i~~----~~~~~l~~l~~~L~~L~l~~N  243 (243)
                      +++|.+++    .+|..+..+++ |++|++++|
T Consensus       377 L~~n~i~~~~~~~l~~~l~~~~~-L~~L~l~~N  408 (461)
T 1z7x_W          377 LADCDVSDSSCSSLAATLLANHS-LRELDLSNN  408 (461)
T ss_dssp             CTTSCCCHHHHHHHHHHHHHCCC-CCEEECCSS
T ss_pred             CCCCCCChhhHHHHHHHHHhCCC-ccEEECCCC
Confidence            99998886    67778888888 999998876

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.68  E-value=1.4e-16  Score=118.63  Aligned_cols=142  Identities=23%  Similarity=0.182  Sum_probs=111.2

Q ss_pred             ccCCCCcEEEccCCCCC-CCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCC
Q 044082           79 LELQHLNYLDLSVNDFL-GNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKL  157 (243)
Q Consensus        79 ~~l~~L~~L~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  157 (243)
                      ...++|+.|++++|.++ +. +|..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+++..|..+..+++|
T Consensus        21 ~~~~~L~~L~l~~n~l~~~~-i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   97 (168)
T 2ell_A           21 RTPAAVRELVLDNCKSNDGK-IEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL   97 (168)
T ss_dssp             SCTTSCSEEECCSCBCBTTB-CSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred             CCcccCCEEECCCCCCChhh-HHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence            34478999999999987 33 788888899999999999998854  677888999999999999887677767778899


Q ss_pred             CEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCC-cccccCCCCCcEEECCCCccccccch
Q 044082          158 TQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPS-LSSMNSSTSLALLDLSSCGLSNSAYH  226 (243)
Q Consensus       158 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~~~~~~L~~L~L~~n~i~~~~~~  226 (243)
                      ++|++++|.+++.+. +..+..+++|++|++++|.+++.++.. ..+..+ ++|+.|++++|.+. ++|.
T Consensus        98 ~~L~Ls~N~l~~~~~-~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l-~~L~~L~l~~n~~~-~~~~  164 (168)
T 2ell_A           98 THLNLSGNKLKDIST-LEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLL-PQLTYLDGYDREDQ-EAPD  164 (168)
T ss_dssp             CEEECBSSSCCSSGG-GGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTC-SSCCEETTEETTSC-BCCS
T ss_pred             CEEeccCCccCcchh-HHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhC-ccCcEecCCCCChh-hccc
Confidence            999999999988752 237788889999999999888664310 134445 88999999888886 4443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.67  E-value=5e-17  Score=144.33  Aligned_cols=158  Identities=19%  Similarity=0.175  Sum_probs=92.4

Q ss_pred             CCCCCcccceE--------EecCCCCceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhc
Q 044082           33 GRKDCCKWSGV--------QCSNRTGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIG  104 (243)
Q Consensus        33 ~~~~~~~~~~~--------~c~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  104 (243)
                      ...++|.|.+.        .|.  ...++.|+++++        .++ .+|..+.  ++|++|++++|.++.  +|.   
T Consensus        17 ~~~~~~~~~~r~~~~~~~~~c~--~~~l~~L~ls~n--------~L~-~lp~~l~--~~L~~L~L~~N~l~~--lp~---   78 (622)
T 3g06_A           17 RAAPAEESRGRAAVVQKMRACL--NNGNAVLNVGES--------GLT-TLPDCLP--AHITTLVIPDNNLTS--LPA---   78 (622)
T ss_dssp             HTCCGGGHHHHHHHHHHHHHHH--HHCCCEEECCSS--------CCS-CCCSCCC--TTCSEEEECSCCCSC--CCC---
T ss_pred             hcCCcchhccccccCccccccc--CCCCcEEEecCC--------CcC-ccChhhC--CCCcEEEecCCCCCC--CCC---
Confidence            56778888553        232  135788888884        555 4555444  677777777777765  454   


Q ss_pred             CCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhcccccc
Q 044082          105 FFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLR  184 (243)
Q Consensus       105 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~  184 (243)
                      .+++|++|++++|.++ .+|.   .+++|++|++++|.++.. |.   .+++|+.|++++|.++.+|.      .+++|+
T Consensus        79 ~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~lp~------~l~~L~  144 (622)
T 3g06_A           79 LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTHL-PA---LPSGLCKLWIFGNQLTSLPV------LPPGLQ  144 (622)
T ss_dssp             CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCCC-CC---CCTTCCEEECCSSCCSCCCC------CCTTCC
T ss_pred             cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCCC-CC---CCCCcCEEECCCCCCCcCCC------CCCCCC
Confidence            4567777777777776 4444   456677777777766643 22   34556666666666655543      124555


Q ss_pred             ccccccccCCCCCCCCcccc-------------cCCCCCcEEECCCCcccc
Q 044082          185 DLYLASSTLPSINRPSLSSM-------------NSSTSLALLDLSSCGLSN  222 (243)
Q Consensus       185 ~L~l~~n~~~~~~~~~~~~~-------------~~~~~L~~L~L~~n~i~~  222 (243)
                      +|++++|.+++++.....+.             ..+++|+.|++++|.+++
T Consensus       145 ~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~  195 (622)
T 3g06_A          145 ELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS  195 (622)
T ss_dssp             EEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC
T ss_pred             EEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC
Confidence            55555555554321000000             112667777777777764

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.66  E-value=1.2e-16  Score=116.65  Aligned_cols=117  Identities=25%  Similarity=0.253  Sum_probs=53.4

Q ss_pred             Ccc-cccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccC-
Q 044082           69 PLR-GNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVS-  146 (243)
Q Consensus        69 ~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-  146 (243)
                      .+. +.+|..+..+++|++|++++|.++.  + ..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+++. 
T Consensus        28 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~  104 (149)
T 2je0_A           28 RSNEGKLEGLTDEFEELEFLSTINVGLTS--I-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLS  104 (149)
T ss_dssp             BCBTTBCCSCCTTCTTCCEEECTTSCCCC--C-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHH
T ss_pred             cCChhHHHHHHhhcCCCcEEECcCCCCCC--c-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChH
Confidence            444 3444444555555555555555444  2 3444455555555555555433444343444555555555554432 


Q ss_pred             CccccCCCCCCCEEEcCCccccCCcchH-HHhhcccccccccc
Q 044082          147 KFGWLSHLNKLTQLDLDFVDLSEASDWL-QVITSLASLRDLYL  188 (243)
Q Consensus       147 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~-~~~~~l~~L~~L~l  188 (243)
                      .+..+..+++|++|++++|.+++.+.+. ..+..+++|++|++
T Consensus       105 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A          105 TIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             HHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred             HHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence            1233444445555555555444442110 13344444444444

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.66  E-value=8e-16  Score=117.14  Aligned_cols=125  Identities=26%  Similarity=0.256  Sum_probs=109.0

Q ss_pred             cccceEEecCCC---------CceEEEecCCCCCCCCCCCCcccccch-hhccCCCCcEEEccCCCCCCCCcchhhcCCC
Q 044082           38 CKWSGVQCSNRT---------GHVIMLNLKYKVDPVCPNRPLRGNINS-SLLELQHLNYLDLSVNDFLGNPIPEFIGFFT  107 (243)
Q Consensus        38 ~~~~~~~c~~~~---------~~l~~L~l~~~~~~~~~~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  107 (243)
                      |.|..+.|....         ..++.|++++        |.+.+..+. .+..+++|++|++++|.+++. .|..+..++
T Consensus         8 C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~--------n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~   78 (192)
T 1w8a_A            8 CEGTTVDCTGRGLKEIPRDIPLHTTELLLND--------NELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEGAS   78 (192)
T ss_dssp             EETTEEECTTSCCSSCCSCCCTTCSEEECCS--------CCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTTTTTCT
T ss_pred             ECCCEEEcCCCCcCcCccCCCCCCCEEECCC--------CcCCccCCccccccCCCCCEEECCCCCCCCc-CHhHcCCcc
Confidence            467777775422         4789999999        577765554 489999999999999999986 788999999


Q ss_pred             CCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCc
Q 044082          108 KLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEAS  171 (243)
Q Consensus       108 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~  171 (243)
                      +|++|++++|.+.+..+..+..+++|++|++++|++++..|..+..+++|++|++++|.+....
T Consensus        79 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  142 (192)
T 1w8a_A           79 HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred             cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence            9999999999999877778999999999999999999988999999999999999999998773

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.66  E-value=1.6e-15  Score=113.87  Aligned_cols=111  Identities=24%  Similarity=0.266  Sum_probs=59.3

Q ss_pred             CCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEE
Q 044082           82 QHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLD  161 (243)
Q Consensus        82 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  161 (243)
                      ++|+.|++++|.++.. .+..+..+++|++|++++|.+.+..+..++.+++|++|++++|.+++..+..+..+++|++|+
T Consensus        28 ~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  106 (177)
T 2o6r_A           28 SSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA  106 (177)
T ss_dssp             TTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCcEEEeCCCcccEe-CHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence            4566666666666553 334455566666666666666533333445555566666666655544444445555555555


Q ss_pred             cCCccccCCcchHHHhhccccccccccccccCCC
Q 044082          162 LDFVDLSEASDWLQVITSLASLRDLYLASSTLPS  195 (243)
Q Consensus       162 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~  195 (243)
                      +++|.++..+.  ..+..+++|++|++++|.+.+
T Consensus       107 l~~N~l~~~~~--~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A          107 LDTNQLKSVPD--GIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             CCSSCCSCCCT--TTTTTCTTCCEEECCSSCBCC
T ss_pred             CcCCcceEeCH--HHhcCCcccCEEEecCCCeec
Confidence            55555554432  123444455555555554443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.66  E-value=7.7e-16  Score=135.31  Aligned_cols=145  Identities=18%  Similarity=0.131  Sum_probs=112.2

Q ss_pred             CCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCC
Q 044082           68 RPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSK  147 (243)
Q Consensus        68 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~  147 (243)
                      |.+++ +|. +.+  +|++|++++|.+++  +|.   .+++|++|++++|.+++ +|.   .+++|++|++++|.+++ +
T Consensus       110 N~l~~-ip~-l~~--~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-l  175 (571)
T 3cvr_A          110 NRLST-LPE-LPA--SLKHLDVDNNQLTM--LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-L  175 (571)
T ss_dssp             SCCSC-CCC-CCT--TCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-C
T ss_pred             CCCCC-cch-hhc--CCCEEECCCCcCCC--CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-c
Confidence            56665 555 544  78888888888877  555   67889999999999884 665   57899999999999987 5


Q ss_pred             ccccCCCCCCCEEEcCCccccCCcchHHHh-hccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccch
Q 044082          148 FGWLSHLNKLTQLDLDFVDLSEASDWLQVI-TSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYH  226 (243)
Q Consensus       148 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~  226 (243)
                      |. +.  ++|++|++++|.++.+|.+...+ .....|+.|++++|.++.++   ..+..+ ++|+.|++++|.+++.+|.
T Consensus       176 p~-l~--~~L~~L~Ls~N~L~~lp~~~~~L~~~~~~L~~L~Ls~N~l~~lp---~~l~~l-~~L~~L~L~~N~l~~~~p~  248 (571)
T 3cvr_A          176 PE-LP--ESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIP---ENILSL-DPTCTIILEDNPLSSRIRE  248 (571)
T ss_dssp             CC-CC--TTCCEEECCSSCCSSCCCCC--------CCEEEECCSSCCCCCC---GGGGGS-CTTEEEECCSSSCCHHHHH
T ss_pred             ch-hh--CCCCEEECcCCCCCchhhHHHhhhcccccceEEecCCCcceecC---HHHhcC-CCCCEEEeeCCcCCCcCHH
Confidence            65 65  89999999999999886522211 11123399999999999754   466776 9999999999999999999


Q ss_pred             hHHhhhc
Q 044082          227 WLFKISS  233 (243)
Q Consensus       227 ~l~~l~~  233 (243)
                      .+..+..
T Consensus       249 ~l~~l~~  255 (571)
T 3cvr_A          249 SLSQQTA  255 (571)
T ss_dssp             HHHHHHH
T ss_pred             HHHHhhc
Confidence            9888754

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.66  E-value=1.3e-16  Score=144.47  Aligned_cols=113  Identities=24%  Similarity=0.159  Sum_probs=51.7

Q ss_pred             hhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCC
Q 044082           76 SSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLN  155 (243)
Q Consensus        76 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~  155 (243)
                      ..+..++.|+.|+|++|.+..  +|..+..+++|++|+|++|.++ .+|..++.+++|++|++++|.++ .+|..++.++
T Consensus       218 ~~~~~l~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~  293 (727)
T 4b8c_D          218 DSKYDDQLWHALDLSNLQIFN--ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF  293 (727)
T ss_dssp             ----CCCCCCEEECTTSCCSC--CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT
T ss_pred             hhhccCCCCcEEECCCCCCCC--CChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC
Confidence            344444445555555554442  3444444444555555555444 44444444445555555555444 3344444444


Q ss_pred             CCCEEEcCCccccCCcchHHHhhccccccccccccccCCC
Q 044082          156 KLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPS  195 (243)
Q Consensus       156 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~  195 (243)
                      +|++|++++|.+..+|.   .+..+++|++|+|++|.+++
T Consensus       294 ~L~~L~L~~N~l~~lp~---~~~~l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          294 QLKYFYFFDNMVTTLPW---EFGNLCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             TCSEEECCSSCCCCCCS---STTSCTTCCCEECTTSCCCS
T ss_pred             CCCEEECCCCCCCccCh---hhhcCCCccEEeCCCCccCC
Confidence            45555555554444433   34444445555555544443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.66  E-value=1.3e-15  Score=130.85  Aligned_cols=137  Identities=23%  Similarity=0.204  Sum_probs=84.4

Q ss_pred             CCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEE
Q 044082           82 QHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLD  161 (243)
Q Consensus        82 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  161 (243)
                      ++|++|++++|.+++  +| .++.+++|++|++++|.+.+ +|..+   ++|++|++++|.+++ +| .++.+++|++|+
T Consensus       131 ~~L~~L~L~~n~l~~--lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~  201 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK--LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIY  201 (454)
T ss_dssp             TTCCEEECCSSCCSS--CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEE
T ss_pred             CCCCEEECcCCCCCC--Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEE
Confidence            456666666666654  44 36666666666666666663 44332   366666777666665 34 366677777777


Q ss_pred             cCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCceeeCC
Q 044082          162 LDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLN  241 (243)
Q Consensus       162 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~  241 (243)
                      +++|.+.+.+..      ..+|++|++++|.+..+ +   .+..+ ++|+.|++++|++++ +|..   .++ |++|+++
T Consensus       202 l~~N~l~~l~~~------~~~L~~L~l~~n~l~~l-p---~~~~l-~~L~~L~l~~N~l~~-l~~~---~~~-L~~L~l~  265 (454)
T 1jl5_A          202 ADNNSLKKLPDL------PLSLESIVAGNNILEEL-P---ELQNL-PFLTTIYADNNLLKT-LPDL---PPS-LEALNVR  265 (454)
T ss_dssp             CCSSCCSSCCCC------CTTCCEEECCSSCCSSC-C---CCTTC-TTCCEEECCSSCCSS-CCSC---CTT-CCEEECC
T ss_pred             CCCCcCCcCCCC------cCcccEEECcCCcCCcc-c---ccCCC-CCCCEEECCCCcCCc-cccc---ccc-cCEEECC
Confidence            777777666431      13677777777777633 2   34555 778888888887774 4432   234 6666666


Q ss_pred             CC
Q 044082          242 SN  243 (243)
Q Consensus       242 ~N  243 (243)
                      +|
T Consensus       266 ~N  267 (454)
T 1jl5_A          266 DN  267 (454)
T ss_dssp             SS
T ss_pred             CC
Confidence            54

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.65  E-value=2e-15  Score=129.73  Aligned_cols=111  Identities=21%  Similarity=0.277  Sum_probs=76.7

Q ss_pred             CCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCC
Q 044082           68 RPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSK  147 (243)
Q Consensus        68 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~  147 (243)
                      |.+++ +| .++++++|++|++++|.+++  +|..+   .+|++|++++|.+.+ +| .++.+++|++|++++|.+++ +
T Consensus       141 n~l~~-lp-~~~~l~~L~~L~l~~N~l~~--lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l  210 (454)
T 1jl5_A          141 NQLEK-LP-ELQNSSFLKIIDVDNNSLKK--LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-L  210 (454)
T ss_dssp             SCCSS-CC-CCTTCTTCCEEECCSSCCSC--CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-C
T ss_pred             CCCCC-Cc-ccCCCCCCCEEECCCCcCcc--cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-C
Confidence            57775 66 58999999999999999886  55433   578888888888874 55 57778888888888887765 2


Q ss_pred             ccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCC
Q 044082          148 FGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPS  195 (243)
Q Consensus       148 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~  195 (243)
                      |..   ..+|++|++++|.+...|+    +..+++|++|++++|.+++
T Consensus       211 ~~~---~~~L~~L~l~~n~l~~lp~----~~~l~~L~~L~l~~N~l~~  251 (454)
T 1jl5_A          211 PDL---PLSLESIVAGNNILEELPE----LQNLPFLTTIYADNNLLKT  251 (454)
T ss_dssp             CCC---CTTCCEEECCSSCCSSCCC----CTTCTTCCEEECCSSCCSS
T ss_pred             CCC---cCcccEEECcCCcCCcccc----cCCCCCCCEEECCCCcCCc
Confidence            321   1356666666666664442    4456666666666666654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.65  E-value=1.3e-15  Score=116.10  Aligned_cols=129  Identities=22%  Similarity=0.275  Sum_probs=109.6

Q ss_pred             EEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCC
Q 044082           53 IMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTN  132 (243)
Q Consensus        53 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~  132 (243)
                      +.+++++        +.+. .+|..+.  ++|++|++++|.++.  +|..+..+++|++|++++|.+++..+..+..+++
T Consensus        13 ~~l~~~~--------~~l~-~ip~~~~--~~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~   79 (193)
T 2wfh_A           13 TVVRCSN--------KGLK-VLPKGIP--RDVTELYLDGNQFTL--VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQ   79 (193)
T ss_dssp             TEEECTT--------SCCS-SCCSCCC--TTCCEEECCSSCCCS--CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CEEEcCC--------CCCC-cCCCCCC--CCCCEEECCCCcCch--hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCC
Confidence            4688888        4655 4565443  689999999999986  7789999999999999999999777778999999


Q ss_pred             CcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCC
Q 044082          133 LQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSI  196 (243)
Q Consensus       133 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  196 (243)
                      |++|++++|+++...+..+..+++|++|++++|.++..+.  ..+..+++|++|++++|.+...
T Consensus        80 L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~L~~N~~~C~  141 (193)
T 2wfh_A           80 LLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPE--GAFNDLSALSHLAIGANPLYCD  141 (193)
T ss_dssp             CCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCT--TTTTTCTTCCEEECCSSCEECS
T ss_pred             CCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeCh--hhhhcCccccEEEeCCCCeecC
Confidence            9999999999998888889999999999999999998853  3677889999999999988754

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.65  E-value=1.3e-17  Score=143.15  Aligned_cols=157  Identities=24%  Similarity=0.146  Sum_probs=68.4

Q ss_pred             CCcEEEccCCCCCCC---CcchhhcCCCCCcEEecCCccccccCCcC-----CCCCCCCcEEEccCCccccCC----ccc
Q 044082           83 HLNYLDLSVNDFLGN---PIPEFIGFFTKLRFLDLSLANFSGRIPYQ-----LGNLTNLQSLNLGYNSLYVSK----FGW  150 (243)
Q Consensus        83 ~L~~L~l~~n~l~~~---~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-----l~~l~~L~~L~l~~n~l~~~~----~~~  150 (243)
                      +|++|++++|.++..   .++..+..+++|++|++++|.+.+..+..     ....++|++|++++|.++...    +..
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  165 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV  165 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence            355555555554421   03444455555555555555544222211     112334555555555544322    222


Q ss_pred             cCCCCCCCEEEcCCccccCCc--chHHHhh-ccccccccccccccCCCCC----CCCcccccCCCCCcEEECCCCccccc
Q 044082          151 LSHLNKLTQLDLDFVDLSEAS--DWLQVIT-SLASLRDLYLASSTLPSIN----RPSLSSMNSSTSLALLDLSSCGLSNS  223 (243)
Q Consensus       151 l~~l~~L~~L~l~~n~l~~~~--~~~~~~~-~l~~L~~L~l~~n~~~~~~----~~~~~~~~~~~~L~~L~L~~n~i~~~  223 (243)
                      +..+++|++|++++|.+.+..  .+...+. ..++|++|++++|.++...    +  ..+..+ ++|++|++++|.+++.
T Consensus       166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~--~~l~~~-~~L~~L~Ls~n~l~~~  242 (461)
T 1z7x_W          166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC--GIVASK-ASLRELALGSNKLGDV  242 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHH--HHHHHC-TTCCEEECCSSBCHHH
T ss_pred             HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHH--HHHHhC-CCccEEeccCCcCChH
Confidence            333455555555555554331  1111111 1235555555555554321    1  122333 5566666666665543


Q ss_pred             cchhHH-----hhhccCceeeCCCC
Q 044082          224 AYHWLF-----KISSNLLALDLNSN  243 (243)
Q Consensus       224 ~~~~l~-----~l~~~L~~L~l~~N  243 (243)
                      ....+.     .+++ |++|++++|
T Consensus       243 ~~~~l~~~~~~~~~~-L~~L~L~~n  266 (461)
T 1z7x_W          243 GMAELCPGLLHPSSR-LRTLWIWEC  266 (461)
T ss_dssp             HHHHHHHHHTSTTCC-CCEEECTTS
T ss_pred             HHHHHHHHHhcCCCC-ceEEECcCC
Confidence            222222     2344 666666554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.64  E-value=2.2e-15  Score=114.81  Aligned_cols=123  Identities=26%  Similarity=0.269  Sum_probs=98.9

Q ss_pred             cccceEEecCC---------CCceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCC
Q 044082           38 CKWSGVQCSNR---------TGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTK  108 (243)
Q Consensus        38 ~~~~~~~c~~~---------~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  108 (243)
                      |.|..+.|...         ...++.|++++        |.++ .+|..+.++++|++|++++|.++.. .+..|..+++
T Consensus        10 C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~--------n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i-~~~~f~~l~~   79 (193)
T 2wfh_A           10 CLDTVVRCSNKGLKVLPKGIPRDVTELYLDG--------NQFT-LVPKELSNYKHLTLIDLSNNRISTL-SNQSFSNMTQ   79 (193)
T ss_dssp             EETTEEECTTSCCSSCCSCCCTTCCEEECCS--------SCCC-SCCGGGGGCTTCCEEECCSSCCCCC-CTTTTTTCTT
T ss_pred             eCCCEEEcCCCCCCcCCCCCCCCCCEEECCC--------CcCc-hhHHHhhcccCCCEEECCCCcCCEe-CHhHccCCCC
Confidence            34566666432         24688888888        4666 5677888999999999999999886 6677888999


Q ss_pred             CcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCC
Q 044082          109 LRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEA  170 (243)
Q Consensus       109 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~  170 (243)
                      |++|++++|.+++..+..+..+++|++|++++|.++...+..+..+++|+.|++++|.+.-.
T Consensus        80 L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~  141 (193)
T 2wfh_A           80 LLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD  141 (193)
T ss_dssp             CCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             CCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence            99999999999876667788889999999999998876666788888999999999988655

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.64  E-value=3.8e-15  Score=132.27  Aligned_cols=74  Identities=20%  Similarity=0.217  Sum_probs=49.9

Q ss_pred             CCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhcc
Q 044082          155 NKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSN  234 (243)
Q Consensus       155 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~  234 (243)
                      ++|++|++++|.++.++      ..+++|+.|++++|.++.++.      .. ++|+.|++++|.|+ .+|..+.++++ 
T Consensus       221 ~~L~~L~Ls~N~L~~lp------~~l~~L~~L~Ls~N~L~~lp~------~~-~~L~~L~Ls~N~L~-~lp~~l~~l~~-  285 (622)
T 3g06_A          221 SGLKELIVSGNRLTSLP------VLPSELKELMVSGNRLTSLPM------LP-SGLLSLSVYRNQLT-RLPESLIHLSS-  285 (622)
T ss_dssp             TTCCEEECCSSCCSCCC------CCCTTCCEEECCSSCCSCCCC------CC-TTCCEEECCSSCCC-SCCGGGGGSCT-
T ss_pred             CCCCEEEccCCccCcCC------CCCCcCcEEECCCCCCCcCCc------cc-ccCcEEeCCCCCCC-cCCHHHhhccc-
Confidence            34455555555554443      233556666666666654321      23 78999999999998 78888999988 


Q ss_pred             CceeeCCCC
Q 044082          235 LLALDLNSN  243 (243)
Q Consensus       235 L~~L~l~~N  243 (243)
                      |+.|++++|
T Consensus       286 L~~L~L~~N  294 (622)
T 3g06_A          286 ETTVNLEGN  294 (622)
T ss_dssp             TCEEECCSC
T ss_pred             cCEEEecCC
Confidence            999999887

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.64  E-value=3.9e-15  Score=111.70  Aligned_cols=125  Identities=22%  Similarity=0.231  Sum_probs=106.8

Q ss_pred             CcccceEEecCCC---------CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCC
Q 044082           37 CCKWSGVQCSNRT---------GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFT  107 (243)
Q Consensus        37 ~~~~~~~~c~~~~---------~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  107 (243)
                      .|.|.++.|....         ..++.|++++        |.+.+..+..+.++++|++|++++|.++.. .+..+..++
T Consensus         6 ~C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~--------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~   76 (177)
T 2o6r_A            6 SCSGTEIRCNSKGLTSVPTGIPSSATRLELES--------NKLQSLPHGVFDKLTQLTKLSLSQNQIQSL-PDGVFDKLT   76 (177)
T ss_dssp             EEETTEEECCSSCCSSCCTTCCTTCSEEECCS--------SCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCT
T ss_pred             EeCCCEEEecCCCCccCCCCCCCCCcEEEeCC--------CcccEeCHHHhcCcccccEEECCCCcceEe-ChhHccCCC
Confidence            3578888886422         5789999999        588876666789999999999999999885 566678999


Q ss_pred             CCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCC
Q 044082          108 KLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEA  170 (243)
Q Consensus       108 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~  170 (243)
                      +|++|++++|.+++..+..+..+++|++|++++|.++...+..+..+++|++|++++|.+...
T Consensus        77 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A           77 KLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             ccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence            999999999999966666688999999999999999977666678899999999999999877

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.63  E-value=5.4e-16  Score=116.41  Aligned_cols=137  Identities=20%  Similarity=0.168  Sum_probs=94.3

Q ss_pred             hhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCC
Q 044082           77 SLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNK  156 (243)
Q Consensus        77 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~  156 (243)
                      .+.++.+|+.|++++|.++.  ++......++|++|++++|.+.+.  ..++.+++|++|++++|.++...+..+..+++
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   89 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD   89 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             hcCCcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence            35567778888888887775  444333334788888888877743  56777788888888888877654444577778


Q ss_pred             CCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCc---ccccCCCCCcEEECCCCccc
Q 044082          157 LTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSL---SSMNSSTSLALLDLSSCGLS  221 (243)
Q Consensus       157 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~---~~~~~~~~L~~L~L~~n~i~  221 (243)
                      |++|++++|.+...+. ...+..+++|++|++++|.+...+.  .   .+..+ ++|+.|+++.|.+.
T Consensus        90 L~~L~L~~N~i~~~~~-~~~l~~l~~L~~L~l~~N~i~~~~~--~~~~~~~~l-~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           90 LTELILTNNSLVELGD-LDPLASLKSLTYLCILRNPVTNKKH--YRLYVIYKV-PQVRVLDFQKVKLK  153 (176)
T ss_dssp             CCEEECCSCCCCCGGG-GGGGGGCTTCCEEECCSSGGGGSTT--HHHHHHHHC-TTCSEETTEECCHH
T ss_pred             CCEEECCCCcCCcchh-hHhhhcCCCCCEEEecCCCCCCcHh--HHHHHHHHC-CccceeCCCcCCHH
Confidence            8888888888866643 1256677788888888887775533  1   24455 78888888877765

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.60  E-value=2.6e-15  Score=112.68  Aligned_cols=133  Identities=17%  Similarity=0.191  Sum_probs=108.4

Q ss_pred             hhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccc
Q 044082          102 FIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLA  181 (243)
Q Consensus       102 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~  181 (243)
                      .+..+.+|++|++++|.+. .++......++|++|++++|.+++.  ..+..+++|++|++++|.+...+.  ..+..++
T Consensus        14 ~~~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~   88 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGE--GLDQALP   88 (176)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECS--CHHHHCT
T ss_pred             hcCCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCc--chhhcCC
Confidence            3567889999999999999 4554333345999999999999865  568899999999999999998853  2458899


Q ss_pred             cccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchh----HHhhhccCceeeCCCC
Q 044082          182 SLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHW----LFKISSNLLALDLNSN  243 (243)
Q Consensus       182 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~----l~~l~~~L~~L~l~~N  243 (243)
                      +|++|++++|.+...+.. ..+..+ ++|+.|++++|.++ .+|..    +..+++ |+.||+++|
T Consensus        89 ~L~~L~L~~N~i~~~~~~-~~l~~l-~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~-L~~Ld~~~n  150 (176)
T 1a9n_A           89 DLTELILTNNSLVELGDL-DPLASL-KSLTYLCILRNPVT-NKKHYRLYVIYKVPQ-VRVLDFQKV  150 (176)
T ss_dssp             TCCEEECCSCCCCCGGGG-GGGGGC-TTCCEEECCSSGGG-GSTTHHHHHHHHCTT-CSEETTEEC
T ss_pred             CCCEEECCCCcCCcchhh-HhhhcC-CCCCEEEecCCCCC-CcHhHHHHHHHHCCc-cceeCCCcC
Confidence            999999999999765320 245566 99999999999998 56664    889999 999999875

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.58  E-value=1.5e-17  Score=127.36  Aligned_cols=113  Identities=23%  Similarity=0.252  Sum_probs=55.4

Q ss_pred             hhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccc
Q 044082          102 FIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLA  181 (243)
Q Consensus       102 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~  181 (243)
                      .+..+++|++|++++|.+.+ +| .+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+.+    .+..++
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l~----~~~~l~  115 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLS----GIEKLV  115 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCHH----HHHHHH
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcCC----ccccCC
Confidence            45555555555555555542 33 4444555555555555554 23333344455555555555555432    344555


Q ss_pred             cccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccc
Q 044082          182 SLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNS  223 (243)
Q Consensus       182 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~  223 (243)
                      +|++|++++|.++..... ..+..+ ++|+.|++++|.+++.
T Consensus       116 ~L~~L~l~~N~i~~~~~~-~~l~~l-~~L~~L~l~~N~l~~~  155 (198)
T 1ds9_A          116 NLRVLYMSNNKITNWGEI-DKLAAL-DKLEDLLLAGNPLYND  155 (198)
T ss_dssp             HSSEEEESEEECCCHHHH-HHHTTT-TTCSEEEECSCHHHHH
T ss_pred             CCCEEECCCCcCCchhHH-HHHhcC-CCCCEEEecCCccccc
Confidence            555555555555432210 123333 5555666665555543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.56  E-value=1.4e-14  Score=127.63  Aligned_cols=158  Identities=18%  Similarity=0.146  Sum_probs=126.7

Q ss_pred             cccccchhhccCCCCcEEE-ccCCCCCCCCcch------hhcC--CCCCcEEecCCccccccCCcCCCCCCCCcEEEccC
Q 044082           70 LRGNINSSLLELQHLNYLD-LSVNDFLGNPIPE------FIGF--FTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGY  140 (243)
Q Consensus        70 ~~~~~~~~~~~l~~L~~L~-l~~n~l~~~~~~~------~~~~--l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  140 (243)
                      +.+..|..++++++|+.|+ ++.|.+..  ++.      .+..  ...|+.|++++|.+++ +|. ++.+++|++|++++
T Consensus       397 ~~~~~~~~l~~l~~L~~L~~l~~n~~~~--L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~  472 (567)
T 1dce_A          397 PLLYEKETLQYFSTLKAVDPMRAAYLDD--LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSH  472 (567)
T ss_dssp             TGGGHHHHHHHHHHHHHHCGGGHHHHHH--HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCS
T ss_pred             cccCCHHHHHHHHhcccCcchhhcccch--hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCc
Confidence            4566777888999999998 56654322  111      1111  1358999999999994 676 88999999999999


Q ss_pred             CccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCC-CCCcccccCCCCCcEEECCCCc
Q 044082          141 NSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSIN-RPSLSSMNSSTSLALLDLSSCG  219 (243)
Q Consensus       141 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~~~~L~~L~L~~n~  219 (243)
                      |.++ .+|..++.+++|+.|++++|.++++|    .+..+++|+.|++++|.+++.. |  ..+..+ ++|+.|++++|.
T Consensus       473 N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp----~l~~l~~L~~L~Ls~N~l~~~~~p--~~l~~l-~~L~~L~L~~N~  544 (567)
T 1dce_A          473 NRLR-ALPPALAALRCLEVLQASDNALENVD----GVANLPRLQELLLCNNRLQQSAAI--QPLVSC-PRLVLLNLQGNS  544 (567)
T ss_dssp             SCCC-CCCGGGGGCTTCCEEECCSSCCCCCG----GGTTCSSCCEEECCSSCCCSSSTT--GGGGGC-TTCCEEECTTSG
T ss_pred             cccc-ccchhhhcCCCCCEEECCCCCCCCCc----ccCCCCCCcEEECCCCCCCCCCCc--HHHhcC-CCCCEEEecCCc
Confidence            9998 67888999999999999999999875    6788999999999999999986 6  677788 999999999999


Q ss_pred             cccccch---hHHhhhccCceeeC
Q 044082          220 LSNSAYH---WLFKISSNLLALDL  240 (243)
Q Consensus       220 i~~~~~~---~l~~l~~~L~~L~l  240 (243)
                      +++..|.   .+..+++ |+.|++
T Consensus       545 l~~~~~~~~~l~~~lp~-L~~L~l  567 (567)
T 1dce_A          545 LCQEEGIQERLAEMLPS-VSSILT  567 (567)
T ss_dssp             GGGSSSCTTHHHHHCTT-CSEEEC
T ss_pred             CCCCccHHHHHHHHCcc-cCccCC
Confidence            9975432   3444777 998874

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.55  E-value=1.9e-14  Score=126.66  Aligned_cols=126  Identities=21%  Similarity=0.160  Sum_probs=97.0

Q ss_pred             CCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEc
Q 044082           83 HLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDL  162 (243)
Q Consensus        83 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  162 (243)
                      .|+.|++++|.++.  +|. ++.+++|++|++++|.+. .+|..++.+++|++|++++|.+++ +| .++.+++|++|++
T Consensus       442 ~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~L  515 (567)
T 1dce_A          442 DVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLL  515 (567)
T ss_dssp             TCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEEC
T ss_pred             CceEEEecCCCCCC--CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEEC
Confidence            47888888888877  565 888888888888888888 778888888888888888888886 45 6888888888888


Q ss_pred             CCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEEC
Q 044082          163 DFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDL  215 (243)
Q Consensus       163 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L  215 (243)
                      ++|.+++.+. +..+..+++|+.|++++|.+++.++....+...+++|+.|++
T Consensus       516 s~N~l~~~~~-p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          516 CNNRLQQSAA-IQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CSSCCCSSST-TGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCCCC-cHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            8888887720 237788888888888888888776522233333488888764

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.55  E-value=8.6e-18  Score=128.68  Aligned_cols=154  Identities=21%  Similarity=0.221  Sum_probs=122.6

Q ss_pred             ceEEEecCCCCCCCCCCCCcccccch------hhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCC
Q 044082           51 HVIMLNLKYKVDPVCPNRPLRGNINS------SLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIP  124 (243)
Q Consensus        51 ~l~~L~l~~~~~~~~~~~~~~~~~~~------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  124 (243)
                      .++.++++.        +.+.+.+|.      .+..+++|++|++++|.++.  +| .+..+++|++|++++|.+. .+|
T Consensus        19 ~l~~l~l~~--------~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~l~-~l~   86 (198)
T 1ds9_A           19 SVVATEAEK--------VELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNLIK-KIE   86 (198)
T ss_dssp             CCCCTTCSE--------EECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEEEC-SCS
T ss_pred             cccCcchhe--------eEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCCcc-ccc
Confidence            455555555        355555554      89999999999999999988  56 8889999999999999999 677


Q ss_pred             cCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCC----
Q 044082          125 YQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPS----  200 (243)
Q Consensus       125 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~----  200 (243)
                      ..+..+++|++|++++|.+++ +| .+..+++|++|++++|.+...+. ...+..+++|++|++++|.+.+..+..    
T Consensus        87 ~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~-~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~  163 (198)
T 1ds9_A           87 NLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGE-IDKLAALDKLEDLLLAGNPLYNDYKENNATS  163 (198)
T ss_dssp             SHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHH-HHHHTTTTTCSEEEECSCHHHHHHHTTTTHH
T ss_pred             chhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhH-HHHHhcCCCCCEEEecCCccccccccccchH
Confidence            777777999999999999986 34 57888999999999999988753 247889999999999999987654300    


Q ss_pred             ----cccccCCCCCcEEECCCCcccc
Q 044082          201 ----LSSMNSSTSLALLDLSSCGLSN  222 (243)
Q Consensus       201 ----~~~~~~~~~L~~L~L~~n~i~~  222 (243)
                          ..+..+ ++|+.||  ++.++.
T Consensus       164 ~~~~~~~~~l-~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          164 EYRIEVVKRL-PNLKKLD--GMPVDV  186 (198)
T ss_dssp             HHHHHHHHHC-SSCSEEC--CGGGTT
T ss_pred             HHHHHHHHhC-CCcEEEC--CcccCH
Confidence                114555 8999887  677764

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.54  E-value=1e-14  Score=121.13  Aligned_cols=182  Identities=16%  Similarity=0.039  Sum_probs=109.4

Q ss_pred             CCceEEEecCCCCCCC------------------CCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCc
Q 044082           49 TGHVIMLNLKYKVDPV------------------CPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLR  110 (243)
Q Consensus        49 ~~~l~~L~l~~~~~~~------------------~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  110 (243)
                      ..+++.|+|++|.+..                  ...|.+....|..+.++++|++|++++|.+... .+..+....++.
T Consensus        53 l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~l~  131 (350)
T 4ay9_X           53 FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHL-PDVHKIHSLQKV  131 (350)
T ss_dssp             CTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSC-CCCTTCCBSSCE
T ss_pred             CCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccC-Cchhhcccchhh
Confidence            3688999999963300                  001222222233344444445555544444442 222233333444


Q ss_pred             EEecCC-ccccccCCcCCCCC-CCCcEEEccCCccccCCccccCCCCCCCEEEcCC-ccccCCcchHHHhhccccccccc
Q 044082          111 FLDLSL-ANFSGRIPYQLGNL-TNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDF-VDLSEASDWLQVITSLASLRDLY  187 (243)
Q Consensus       111 ~L~l~~-~~~~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~~~l~~L~~L~  187 (243)
                      .+++.. +.+....+..+..+ ..++.|++++|.++...+. .....+|+.+++.+ |.+..++.  ..+..+++|++|+
T Consensus       132 ~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~-~f~~~~L~~l~l~~~n~l~~i~~--~~f~~l~~L~~Ld  208 (350)
T 4ay9_X          132 LLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNS-AFNGTQLDELNLSDNNNLEELPN--DVFHGASGPVILD  208 (350)
T ss_dssp             EEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTT-SSTTEEEEEEECTTCTTCCCCCT--TTTTTEECCSEEE
T ss_pred             hhhhccccccccccccchhhcchhhhhhccccccccCCChh-hccccchhHHhhccCCcccCCCH--HHhccCcccchhh
Confidence            444432 23332222334444 3588899999998854444 44557899999974 77888864  3688999999999


Q ss_pred             cccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCceeeCCC
Q 044082          188 LASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNS  242 (243)
Q Consensus       188 l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~  242 (243)
                      +++|+++.++.  ..    +.+|+.|.+.++.--..+|. +.++++ |+.+++.+
T Consensus       209 Ls~N~l~~lp~--~~----~~~L~~L~~l~~~~l~~lP~-l~~l~~-L~~l~l~~  255 (350)
T 4ay9_X          209 ISRTRIHSLPS--YG----LENLKKLRARSTYNLKKLPT-LEKLVA-LMEASLTY  255 (350)
T ss_dssp             CTTSCCCCCCS--SS----CTTCCEEECTTCTTCCCCCC-TTTCCS-CCEEECSC
T ss_pred             cCCCCcCccCh--hh----hccchHhhhccCCCcCcCCC-chhCcC-hhhCcCCC
Confidence            99999998765  22    26677777655543336664 778888 99998865

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.49  E-value=1.8e-13  Score=102.01  Aligned_cols=107  Identities=21%  Similarity=0.150  Sum_probs=92.1

Q ss_pred             EEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCC
Q 044082           53 IMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTN  132 (243)
Q Consensus        53 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~  132 (243)
                      +.+++++        |.++. +|..+.  ++|++|++++|.++.. .|..+..+++|++|++++|.+.+..+..+..+++
T Consensus        12 ~~l~~s~--------n~l~~-ip~~~~--~~l~~L~L~~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~   79 (170)
T 3g39_A           12 TTVDCSG--------KSLAS-VPTGIP--TTTQVLYLYDNQITKL-EPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ   79 (170)
T ss_dssp             TEEECTT--------SCCSS-CCSCCC--TTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CEEEeCC--------CCcCc-cCccCC--CCCcEEEcCCCcCCcc-ChhhhcCcccCCEEECCCCCcCccChhhccCCCC
Confidence            5799999        46664 665553  8899999999999986 6888999999999999999999666666789999


Q ss_pred             CcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCc
Q 044082          133 LQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEAS  171 (243)
Q Consensus       133 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~  171 (243)
                      |++|++++|++++..+..+..+++|++|++++|.+....
T Consensus        80 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           80 LTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             CCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence            999999999999877777999999999999999998663

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.48  E-value=3.2e-13  Score=100.70  Aligned_cols=108  Identities=26%  Similarity=0.260  Sum_probs=90.6

Q ss_pred             CcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcC
Q 044082           84 LNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLD  163 (243)
Q Consensus        84 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  163 (243)
                      .+.+++++|.++.  +|..+  .++|++|++++|.+++..|..+..+++|++|++++|+++...+..+..+++|++|+++
T Consensus        11 ~~~l~~s~n~l~~--ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           11 GTTVDCSGKSLAS--VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             TTEEECTTSCCSS--CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcCc--cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            4688999999887  66655  3789999999999997777888899999999999999987777778889999999999


Q ss_pred             CccccCCcchHHHhhccccccccccccccCCCCC
Q 044082          164 FVDLSEASDWLQVITSLASLRDLYLASSTLPSIN  197 (243)
Q Consensus       164 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  197 (243)
                      +|.++..+.  ..+..+++|++|++++|.+....
T Consensus        87 ~N~l~~~~~--~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           87 DNQLKSIPR--GAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             SSCCCCCCT--TTTTTCTTCCEEECCSSCBCTTB
T ss_pred             CCccCEeCH--HHhcCCCCCCEEEeCCCCCCCCc
Confidence            999988853  36788899999999999887654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.47  E-value=5e-13  Score=100.01  Aligned_cols=107  Identities=25%  Similarity=0.259  Sum_probs=82.6

Q ss_pred             cEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCC
Q 044082           85 NYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDF  164 (243)
Q Consensus        85 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~  164 (243)
                      +.++++++.++.  +|..+.  ++|++|++++|.+.+..|..+..+++|++|++++|++++..+..+..+++|++|++++
T Consensus        15 ~~l~~~~n~l~~--iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNIRLAS--VPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSSCCSS--CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCCCCc--cCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            678888888866  666553  7788888888888866677788888888888888888876666667888888888888


Q ss_pred             ccccCCcchHHHhhccccccccccccccCCCCC
Q 044082          165 VDLSEASDWLQVITSLASLRDLYLASSTLPSIN  197 (243)
Q Consensus       165 n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  197 (243)
                      |.+...+.  ..+..+++|++|++++|.+....
T Consensus        91 N~l~~l~~--~~~~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           91 NHLKSIPR--GAFDNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             SCCCCCCT--TTTTTCTTCSEEECCSSCBCTTB
T ss_pred             CccceeCH--HHhccccCCCEEEeCCCCccccc
Confidence            88887753  24777888888888888877543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.46  E-value=9.8e-13  Score=98.41  Aligned_cols=107  Identities=19%  Similarity=0.158  Sum_probs=92.3

Q ss_pred             EEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCC
Q 044082           53 IMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTN  132 (243)
Q Consensus        53 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~  132 (243)
                      +.+++++        +.+. .+|..+.  ++|++|++++|.++.. .|..+..+++|++|++++|.+.+..+..+..+++
T Consensus        15 ~~l~~~~--------n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~   82 (174)
T 2r9u_A           15 TLVNCQN--------IRLA-SVPAGIP--TDKQRLWLNNNQITKL-EPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQ   82 (174)
T ss_dssp             SEEECCS--------SCCS-SCCSCCC--TTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             cEEEeCC--------CCCC-ccCCCcC--CCCcEEEeCCCCcccc-CHHHhcCCcCCCEEECCCCCCCccChhHhCCcch
Confidence            5689998        4654 5666554  8899999999999986 7888999999999999999999655556789999


Q ss_pred             CcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCc
Q 044082          133 LQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEAS  171 (243)
Q Consensus       133 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~  171 (243)
                      |++|++++|+++...+..+..+++|++|++++|.+...+
T Consensus        83 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           83 LTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred             hhEEECCCCccceeCHHHhccccCCCEEEeCCCCccccc
Confidence            999999999999776667999999999999999998774

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.46  E-value=8.5e-16  Score=128.66  Aligned_cols=174  Identities=18%  Similarity=0.165  Sum_probs=122.8

Q ss_pred             CceEEEecCCCCCCCCCCCCcccccchhhccC-----CCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCC
Q 044082           50 GHVIMLNLKYKVDPVCPNRPLRGNINSSLLEL-----QHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIP  124 (243)
Q Consensus        50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  124 (243)
                      ..++.|+|++|        .++......++.+     ++|+.|++++|.++..........+++|++|++++|.+.+...
T Consensus        72 ~~L~~L~Ls~n--------~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~  143 (372)
T 3un9_A           72 SSLRQLNLAGV--------RMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEAC  143 (372)
T ss_dssp             TTCCEEECTTS--------CCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHH
T ss_pred             hhCCEEEecCC--------CCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHH
Confidence            56889999994        7765444444333     6899999999998654222333456789999999998875443


Q ss_pred             cCC-----CCCCCCcEEEccCCccccCC----ccccCCCCCCCEEEcCCccccCC--cchHHHhhccccccccccccccC
Q 044082          125 YQL-----GNLTNLQSLNLGYNSLYVSK----FGWLSHLNKLTQLDLDFVDLSEA--SDWLQVITSLASLRDLYLASSTL  193 (243)
Q Consensus       125 ~~l-----~~l~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~l~~n~l~~~--~~~~~~~~~l~~L~~L~l~~n~~  193 (243)
                      ..+     ...+.|++|++++|.++...    +..+...++|++|++++|.+.+.  ..++..+...++|++|++++|.+
T Consensus       144 ~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i  223 (372)
T 3un9_A          144 KDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA  223 (372)
T ss_dssp             HHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCC
T ss_pred             HHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCC
Confidence            333     34678999999999987532    33446778899999999998765  23455677788999999999988


Q ss_pred             CCCCC--CCcccccCCCCCcEEECCCCccccccchhHHhhh
Q 044082          194 PSINR--PSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKIS  232 (243)
Q Consensus       194 ~~~~~--~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~  232 (243)
                      +....  ....+... ++|++|+|++|.|++.....+....
T Consensus       224 ~~~g~~~l~~~L~~~-~~L~~L~Ls~N~i~~~g~~~L~~~~  263 (372)
T 3un9_A          224 GDTAALALARAAREH-PSLELLHLYFNELSSEGRQVLRDLG  263 (372)
T ss_dssp             CHHHHHHHHHHHHHC-SSCCEEECTTSSCCHHHHHHHHHCC
T ss_pred             CHHHHHHHHHHHHhC-CCCCEEeccCCCCCHHHHHHHHHHh
Confidence            75322  00122344 8899999999999876666666543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.44  E-value=3.5e-15  Score=124.93  Aligned_cols=160  Identities=19%  Similarity=0.094  Sum_probs=118.7

Q ss_pred             CCCCcEEEccCCCCCCCCcchhhcC-----CCCCcEEecCCccccccCCcCC-CCCCCCcEEEccCCccccCCcccc---
Q 044082           81 LQHLNYLDLSVNDFLGNPIPEFIGF-----FTKLRFLDLSLANFSGRIPYQL-GNLTNLQSLNLGYNSLYVSKFGWL---  151 (243)
Q Consensus        81 l~~L~~L~l~~n~l~~~~~~~~~~~-----l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~l---  151 (243)
                      ++.|+.|++++|.++.. ....+..     .++|++|++++|.+.+.....+ ..+++|++|++++|.++......+   
T Consensus        71 ~~~L~~L~Ls~n~l~~~-~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~  149 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPV-KCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL  149 (372)
T ss_dssp             HTTCCEEECTTSCCCHH-HHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHH-HHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence            46799999999998764 3333332     3689999999999875444333 245789999999999976544443   


Q ss_pred             --CCCCCCCEEEcCCccccCC--cchHHHhhccccccccccccccCCCCCC--CCcccccCCCCCcEEECCCCcccccc-
Q 044082          152 --SHLNKLTQLDLDFVDLSEA--SDWLQVITSLASLRDLYLASSTLPSINR--PSLSSMNSSTSLALLDLSSCGLSNSA-  224 (243)
Q Consensus       152 --~~l~~L~~L~l~~n~l~~~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~~~~~~L~~L~L~~n~i~~~~-  224 (243)
                        ...++|++|++++|.+++.  ..++..+...++|++|+|++|.+.....  ....+... ++|+.|+|++|.|++.. 
T Consensus       150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~-~~L~~L~Ls~N~i~~~g~  228 (372)
T 3un9_A          150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRN-RQLQELNVAYNGAGDTAA  228 (372)
T ss_dssp             HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGC-SCCCEEECCSSCCCHHHH
T ss_pred             HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcC-CCcCeEECCCCCCCHHHH
Confidence              3467899999999999765  3345567888999999999999875321  00234455 79999999999998643 


Q ss_pred             ---chhHHhhhccCceeeCCCC
Q 044082          225 ---YHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       225 ---~~~l~~l~~~L~~L~l~~N  243 (243)
                         +..+...+. |++|++++|
T Consensus       229 ~~l~~~L~~~~~-L~~L~Ls~N  249 (372)
T 3un9_A          229 LALARAAREHPS-LELLHLYFN  249 (372)
T ss_dssp             HHHHHHHHHCSS-CCEEECTTS
T ss_pred             HHHHHHHHhCCC-CCEEeccCC
Confidence               344556678 999999987

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.38  E-value=8.3e-13  Score=108.64  Aligned_cols=182  Identities=12%  Similarity=0.037  Sum_probs=120.2

Q ss_pred             CCceEEEecCCCCCC--CCCCCCccc---------ccc-hhhcc--------CCCCcEEEccCCCCCCCCcchhhcCCCC
Q 044082           49 TGHVIMLNLKYKVDP--VCPNRPLRG---------NIN-SSLLE--------LQHLNYLDLSVNDFLGNPIPEFIGFFTK  108 (243)
Q Consensus        49 ~~~l~~L~l~~~~~~--~~~~~~~~~---------~~~-~~~~~--------l~~L~~L~l~~n~l~~~~~~~~~~~l~~  108 (243)
                      .++++.|||++|.+.  ......+..         .+| ..|.+        +++|+.+++.. .++.. .+..|..+++
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I-~~~aF~~~~~  125 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNI-EDAAFKGCDN  125 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEE-CTTTTTTCTT
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccch-hHHHhhcCcc
Confidence            356888999886442  000000000         222 35666        88899999888 66664 4567888899


Q ss_pred             CcEEecCCccccccCCcCCC------------------------------------------------------------
Q 044082          109 LRFLDLSLANFSGRIPYQLG------------------------------------------------------------  128 (243)
Q Consensus       109 L~~L~l~~~~~~~~~~~~l~------------------------------------------------------------  128 (243)
                      |+++++..|.+....+..|.                                                            
T Consensus       126 L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~  205 (329)
T 3sb4_A          126 LKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDIN  205 (329)
T ss_dssp             CCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCS
T ss_pred             cceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccc
Confidence            99999988765311111111                                                            


Q ss_pred             ------------------CCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhcccccc-ccccc
Q 044082          129 ------------------NLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLR-DLYLA  189 (243)
Q Consensus       129 ------------------~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~-~L~l~  189 (243)
                                        .+++|+.+++++|.++......|..+.+|+.+++..| +..++.  ..+..+.+|+ .+.+.
T Consensus       206 ~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~--~aF~~~~~L~~~l~l~  282 (329)
T 3sb4_A          206 FLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQ--RVFSNCGRLAGTLELP  282 (329)
T ss_dssp             EEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECT--TTTTTCTTCCEEEEEC
T ss_pred             eEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehH--HHhhCChhccEEEEEc
Confidence                              1567888888887777666677888888888888776 666643  3677888888 88887


Q ss_pred             cccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCceeeC
Q 044082          190 SSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDL  240 (243)
Q Consensus       190 ~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l  240 (243)
                      + .++.+..  ..+..+ ++|+.++++.|.++...+..|.++++ |++++.
T Consensus       283 ~-~l~~I~~--~aF~~c-~~L~~l~l~~n~i~~I~~~aF~~~~~-L~~ly~  328 (329)
T 3sb4_A          283 A-SVTAIEF--GAFMGC-DNLRYVLATGDKITTLGDELFGNGVP-SKLIYK  328 (329)
T ss_dssp             T-TCCEECT--TTTTTC-TTEEEEEECSSCCCEECTTTTCTTCC-CCEEEC
T ss_pred             c-cceEEch--hhhhCC-ccCCEEEeCCCccCccchhhhcCCcc-hhhhcc
Confidence            7 5665555  566666 88888888888887555557777777 877753

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.37  E-value=6.2e-14  Score=123.85  Aligned_cols=82  Identities=15%  Similarity=0.109  Sum_probs=42.7

Q ss_pred             CCCCCcEEecCCccccccC----CcCCCCCCCCcEEEccCCcccc----CCccccCCCCCCCEEEcCCccccCCcchHHH
Q 044082          105 FFTKLRFLDLSLANFSGRI----PYQLGNLTNLQSLNLGYNSLYV----SKFGWLSHLNKLTQLDLDFVDLSEASDWLQV  176 (243)
Q Consensus       105 ~l~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~  176 (243)
                      .+++|++|++++|.+.+..    +..+..+++|++|++++|.+++    ..+..+..+++|++|++++|.+.+.+.   .
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~---~  238 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVG---F  238 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHH---H
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHH---H
Confidence            4556666666666554331    1122345566666666665542    122233445666666666665555432   4


Q ss_pred             hhccccccccccc
Q 044082          177 ITSLASLRDLYLA  189 (243)
Q Consensus       177 ~~~l~~L~~L~l~  189 (243)
                      +..+++|++|+++
T Consensus       239 ~~~~~~L~~L~l~  251 (592)
T 3ogk_B          239 FKAAANLEEFCGG  251 (592)
T ss_dssp             HHHCTTCCEEEEC
T ss_pred             HhhhhHHHhhccc
Confidence            5555556655554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.34  E-value=8.1e-12  Score=103.33  Aligned_cols=99  Identities=19%  Similarity=0.141  Sum_probs=86.7

Q ss_pred             CcccccchhhccCCCCcEEEccC-CCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCC
Q 044082           69 PLRGNINSSLLELQHLNYLDLSV-NDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSK  147 (243)
Q Consensus        69 ~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~  147 (243)
                      .++. +|. +..+++|+.|+|++ |.++.. .+..|..+++|++|+|++|.+.+..|..|..+++|++|+|++|++++..
T Consensus        20 ~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~   96 (347)
T 2ifg_A           20 ALDS-LHH-LPGAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLS   96 (347)
T ss_dssp             CCTT-TTT-SCSCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCC
T ss_pred             CCCc-cCC-CCCCCCeeEEEccCCCCCCCc-ChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeC
Confidence            5664 777 99999999999996 999885 6678999999999999999999888888999999999999999999776


Q ss_pred             ccccCCCCCCCEEEcCCccccCCc
Q 044082          148 FGWLSHLNKLTQLDLDFVDLSEAS  171 (243)
Q Consensus       148 ~~~l~~l~~L~~L~l~~n~l~~~~  171 (243)
                      +..+..+. |+.|++.+|.+....
T Consensus        97 ~~~~~~~~-L~~l~l~~N~~~c~c  119 (347)
T 2ifg_A           97 WKTVQGLS-LQELVLSGNPLHCSC  119 (347)
T ss_dssp             STTTCSCC-CCEEECCSSCCCCCG
T ss_pred             HHHcccCC-ceEEEeeCCCccCCC
Confidence            66666665 999999999998764

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.32  E-value=8.7e-13  Score=108.53  Aligned_cols=175  Identities=16%  Similarity=0.096  Sum_probs=113.7

Q ss_pred             CceEEEecCCCCCCCCCCCCcccccchhhcc-CCCCcEEEccCCCCCC------C------------C-cchhhcC----
Q 044082           50 GHVIMLNLKYKVDPVCPNRPLRGNINSSLLE-LQHLNYLDLSVNDFLG------N------------P-IPEFIGF----  105 (243)
Q Consensus        50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~-l~~L~~L~l~~n~l~~------~------------~-~~~~~~~----  105 (243)
                      .+++.|.+++         .+...-...+.. +++|+.|||++|.+..      .            . .+..|.+    
T Consensus        25 ~~l~~L~l~g---------~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~   95 (329)
T 3sb4_A           25 NSITHLTLTG---------KLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNG   95 (329)
T ss_dssp             HHCSEEEEEE---------EECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETT
T ss_pred             CceeEEEEec---------cccHHHHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccc
Confidence            4678888887         333322233444 7889999999999871      0            0 1234567    


Q ss_pred             ----CCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCC----------------------------
Q 044082          106 ----FTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSH----------------------------  153 (243)
Q Consensus       106 ----l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~----------------------------  153 (243)
                          +++|+.+++.. .++...+..|..+++|+.++++.|.+....+..|..                            
T Consensus        96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~  174 (329)
T 3sb4_A           96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE  174 (329)
T ss_dssp             EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred             cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccc
Confidence                89999999998 777555667999999999999998754332222222                            


Q ss_pred             --------------------------------------------------CCCCCEEEcCCccccCCcchHHHhhccccc
Q 044082          154 --------------------------------------------------LNKLTQLDLDFVDLSEASDWLQVITSLASL  183 (243)
Q Consensus       154 --------------------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L  183 (243)
                                                                        +++|+.+++.+|.++.++.  ..+..+.+|
T Consensus       175 ~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~--~aF~~~~~L  252 (329)
T 3sb4_A          175 GEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPD--FTFAQKKYL  252 (329)
T ss_dssp             SCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECT--TTTTTCTTC
T ss_pred             ccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecH--hhhhCCCCC
Confidence                                                              4566667777666666643  356666777


Q ss_pred             cccccccccCCCCCCCCcccccCCCCCc-EEECCCCccccccchhHHhhhccCceeeCCC
Q 044082          184 RDLYLASSTLPSINRPSLSSMNSSTSLA-LLDLSSCGLSNSAYHWLFKISSNLLALDLNS  242 (243)
Q Consensus       184 ~~L~l~~n~~~~~~~~~~~~~~~~~~L~-~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~  242 (243)
                      +.+.+.+| +..+..  ..+..+ .+|+ .+++.. .++...+..|.++++ |+++++.+
T Consensus       253 ~~l~l~~n-i~~I~~--~aF~~~-~~L~~~l~l~~-~l~~I~~~aF~~c~~-L~~l~l~~  306 (329)
T 3sb4_A          253 LKIKLPHN-LKTIGQ--RVFSNC-GRLAGTLELPA-SVTAIEFGAFMGCDN-LRYVLATG  306 (329)
T ss_dssp             CEEECCTT-CCEECT--TTTTTC-TTCCEEEEECT-TCCEECTTTTTTCTT-EEEEEECS
T ss_pred             CEEECCcc-cceehH--HHhhCC-hhccEEEEEcc-cceEEchhhhhCCcc-CCEEEeCC
Confidence            77777665 554444  445555 6677 777766 555334456666776 77777644

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.32  E-value=4.6e-13  Score=118.28  Aligned_cols=18  Identities=28%  Similarity=0.287  Sum_probs=10.1

Q ss_pred             HhhccccccccccccccC
Q 044082          176 VITSLASLRDLYLASSTL  193 (243)
Q Consensus       176 ~~~~l~~L~~L~l~~n~~  193 (243)
                      .+..+++|++|++++|.+
T Consensus       288 ~~~~~~~L~~L~Ls~~~l  305 (592)
T 3ogk_B          288 LFPFAAQIRKLDLLYALL  305 (592)
T ss_dssp             GGGGGGGCCEEEETTCCC
T ss_pred             HHhhcCCCcEEecCCCcC
Confidence            444555666666666554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.28  E-value=5.4e-13  Score=117.84  Aligned_cols=108  Identities=18%  Similarity=0.147  Sum_probs=61.0

Q ss_pred             CceEEEecCCCCCCCCCCCCcccccchhhc-cCCCCcEEEccCC-CCCCCCcchhhcCCCCCcEEecCCccccccCCcC-
Q 044082           50 GHVIMLNLKYKVDPVCPNRPLRGNINSSLL-ELQHLNYLDLSVN-DFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQ-  126 (243)
Q Consensus        50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-  126 (243)
                      ++++.|+|+++        .+++..+..+. .+++|++|++++| .++...++..+..+++|++|++++|.+.+..+.. 
T Consensus       105 ~~L~~L~L~~~--------~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l  176 (594)
T 2p1m_B          105 TWLEEIRLKRM--------VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWL  176 (594)
T ss_dssp             TTCCEEEEESC--------BCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGG
T ss_pred             CCCCeEEeeCc--------EEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHH
Confidence            45677777763        55555555554 5677777777776 3332213344446777777777777765433322 


Q ss_pred             ---CCCCCCCcEEEccCCc--cccC-CccccCCCCCCCEEEcCCc
Q 044082          127 ---LGNLTNLQSLNLGYNS--LYVS-KFGWLSHLNKLTQLDLDFV  165 (243)
Q Consensus       127 ---l~~l~~L~~L~l~~n~--l~~~-~~~~l~~l~~L~~L~l~~n  165 (243)
                         ...+++|++|++++|.  ++.. ....+..+++|++|++++|
T Consensus       177 ~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          177 SHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             GGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             HHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence               2355677777777665  2211 1111233566777777666

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.25  E-value=1.9e-11  Score=101.07  Aligned_cols=105  Identities=18%  Similarity=0.171  Sum_probs=86.2

Q ss_pred             EEEccCC-CCCCCCcchhhcCCCCCcEEecCC-ccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcC
Q 044082           86 YLDLSVN-DFLGNPIPEFIGFFTKLRFLDLSL-ANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLD  163 (243)
Q Consensus        86 ~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  163 (243)
                      .++.+++ .++.  +|. +..+++|++|+|++ |.+.+..+..++.+++|++|++++|++++..|..|..+++|++|+|+
T Consensus        12 ~v~~~~~n~l~~--ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           12 GLRCTRDGALDS--LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             CEECCSSCCCTT--TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             EEEcCCCCCCCc--cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            4677887 7776  777 88899999999996 89886666778899999999999999998888888999999999999


Q ss_pred             CccccCCcchHHHhhccccccccccccccCCCC
Q 044082          164 FVDLSEASDWLQVITSLASLRDLYLASSTLPSI  196 (243)
Q Consensus       164 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  196 (243)
                      +|.+...+.  ..+..++ |+.|++.+|.+...
T Consensus        89 ~N~l~~~~~--~~~~~~~-L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           89 FNALESLSW--KTVQGLS-LQELVLSGNPLHCS  118 (347)
T ss_dssp             SSCCSCCCS--TTTCSCC-CCEEECCSSCCCCC
T ss_pred             CCccceeCH--HHcccCC-ceEEEeeCCCccCC
Confidence            999988854  2444444 89999999888754

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.21  E-value=2.5e-13  Score=119.98  Aligned_cols=85  Identities=19%  Similarity=0.222  Sum_probs=45.4

Q ss_pred             CCCCCCEEEcCCccccCCcchHHHhh-ccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccch-hHHh
Q 044082          153 HLNKLTQLDLDFVDLSEASDWLQVIT-SLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYH-WLFK  230 (243)
Q Consensus       153 ~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~-~l~~  230 (243)
                      .+++|+.|++++ .+++..  +..+. .+++|++|++++|.+++...  ..+...+++|+.|++++|.+++..+. .+..
T Consensus       430 ~~~~L~~L~L~~-~l~~~~--~~~l~~~~~~L~~L~L~~~~i~~~~~--~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~  504 (594)
T 2p1m_B          430 HCKDLRRLSLSG-LLTDKV--FEYIGTYAKKMEMLSVAFAGDSDLGM--HHVLSGCDSLRKLEIRDCPFGDKALLANASK  504 (594)
T ss_dssp             HCTTCCEEECCS-SCCHHH--HHHHHHHCTTCCEEEEESCCSSHHHH--HHHHHHCTTCCEEEEESCSCCHHHHHHTGGG
T ss_pred             hCCCccEEeecC-cccHHH--HHHHHHhchhccEeeccCCCCcHHHH--HHHHhcCCCcCEEECcCCCCcHHHHHHHHHh
Confidence            345555555544 333221  11222 25667777777766644322  22212237777888877777654433 3334


Q ss_pred             hhccCceeeCCCC
Q 044082          231 ISSNLLALDLNSN  243 (243)
Q Consensus       231 l~~~L~~L~l~~N  243 (243)
                      +++ |++|++++|
T Consensus       505 l~~-L~~L~l~~~  516 (594)
T 2p1m_B          505 LET-MRSLWMSSC  516 (594)
T ss_dssp             GGG-SSEEEEESS
T ss_pred             CCC-CCEEeeeCC
Confidence            666 777777765

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.01  E-value=1.2e-10  Score=96.82  Aligned_cols=138  Identities=18%  Similarity=0.143  Sum_probs=58.2

Q ss_pred             chhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccC--CCCCCCEEEcCC--cccc-C--Ccc
Q 044082          100 PEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLS--HLNKLTQLDLDF--VDLS-E--ASD  172 (243)
Q Consensus       100 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L~l~~--n~l~-~--~~~  172 (243)
                      ...+..+++|+.|.++++.-. .++. + .+++|++|++..+.+.......+.  .+++|+.|+|+.  +... +  ...
T Consensus       165 ~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~  241 (362)
T 2ra8_A          165 SPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV  241 (362)
T ss_dssp             HHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred             HHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence            344455566666666554211 1222 2 245566666655554432222222  455555555532  1110 1  000


Q ss_pred             hHHHh--hccccccccccccccCCCCCCCCcccc--cCCCCCcEEECCCCcccccc----chhHHhhhccCceeeCCCC
Q 044082          173 WLQVI--TSLASLRDLYLASSTLPSINRPSLSSM--NSSTSLALLDLSSCGLSNSA----YHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       173 ~~~~~--~~l~~L~~L~l~~n~~~~~~~~~~~~~--~~~~~L~~L~L~~n~i~~~~----~~~l~~l~~~L~~L~l~~N  243 (243)
                      +...+  ..+++|++|++.+|.+.....  ..+.  ..+++|+.|+|+.|.+++..    +..+..+++ |+.|++++|
T Consensus       242 l~~~l~~~~~p~Lr~L~L~~~~i~~~~~--~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~-L~~L~L~~n  317 (362)
T 2ra8_A          242 FRPLFSKDRFPNLKWLGIVDAEEQNVVV--EMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKH-LKFINMKYN  317 (362)
T ss_dssp             TGGGSCTTTCTTCCEEEEESCTTHHHHH--HHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTT-CSEEECCSB
T ss_pred             HHHHHhcCCCCCcCEEeCCCCCCchHHH--HHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCc-ceEEECCCC
Confidence            00111  134556666665555432111  1111  11255666666666555432    223334455 666655544

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.96  E-value=3.4e-09  Score=89.41  Aligned_cols=163  Identities=7%  Similarity=0.043  Sum_probs=84.9

Q ss_pred             CcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCc------
Q 044082           69 PLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNS------  142 (243)
Q Consensus        69 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~------  142 (243)
                      .+...-...|.++++|+.++++.|.++.  ++.......+|+.+.+..+ +.......|..+++|+.+.+..+-      
T Consensus       167 ~l~~I~~~aF~~c~~L~~l~l~~n~l~~--I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~  243 (401)
T 4fdw_A          167 TLEQLKEDIFYYCYNLKKADLSKTKITK--LPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPENVSTIGQE  243 (401)
T ss_dssp             TCCEECSSTTTTCTTCCEEECTTSCCSE--ECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTTCCEECTT
T ss_pred             CccEehHHHhhCcccCCeeecCCCcceE--echhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCCccCcccc
Confidence            3333334567778888888888777665  3333223566666666643 443334455666666666665431      


Q ss_pred             ---------------cccCCccccCCCCCCCEEEcCCcccc-----CCcchHHHhhccccccccccccccCCCCCCCCcc
Q 044082          143 ---------------LYVSKFGWLSHLNKLTQLDLDFVDLS-----EASDWLQVITSLASLRDLYLASSTLPSINRPSLS  202 (243)
Q Consensus       143 ---------------l~~~~~~~l~~l~~L~~L~l~~n~l~-----~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  202 (243)
                                     ++......|..+.+|+.+.+.+|.+.     .++.  ..+..+.+|+.+.+.. .++.+..  ..
T Consensus       244 aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~--~aF~~c~~L~~l~l~~-~i~~I~~--~a  318 (401)
T 4fdw_A          244 AFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHP--YCLEGCPKLARFEIPE-SIRILGQ--GL  318 (401)
T ss_dssp             TTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECT--TTTTTCTTCCEECCCT-TCCEECT--TT
T ss_pred             ccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECH--HHhhCCccCCeEEeCC-ceEEEhh--hh
Confidence                           22222334555555555555554443     1211  2455555566655552 2443333  34


Q ss_pred             cccCCCCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082          203 SMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       203 ~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N  243 (243)
                      +..+ .+|+.+.+..+ ++......|.++ . |+++++.+|
T Consensus       319 F~~c-~~L~~l~lp~~-l~~I~~~aF~~~-~-L~~l~l~~n  355 (401)
T 4fdw_A          319 LGGN-RKVTQLTIPAN-VTQINFSAFNNT-G-IKEVKVEGT  355 (401)
T ss_dssp             TTTC-CSCCEEEECTT-CCEECTTSSSSS-C-CCEEEECCS
T ss_pred             hcCC-CCccEEEECcc-ccEEcHHhCCCC-C-CCEEEEcCC
Confidence            4444 66666666443 442333455555 5 666666543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.90  E-value=8.1e-10  Score=91.88  Aligned_cols=183  Identities=14%  Similarity=0.087  Sum_probs=116.1

Q ss_pred             CceEEEecCCCCCCCCCCCCc----ccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCc
Q 044082           50 GHVIMLNLKYKVDPVCPNRPL----RGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPY  125 (243)
Q Consensus        50 ~~l~~L~l~~~~~~~~~~~~~----~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  125 (243)
                      ++++.|.+.+...   ....+    .+.+...+..+++|+.|+++++.-..  ++. + .+++|+.|++..|.+......
T Consensus       139 ~~L~~L~l~~~~~---e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~--l~~-~-~~~~L~~L~L~~~~l~~~~l~  211 (362)
T 2ra8_A          139 AHFEGLFWGDIDF---EEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS--IGK-K-PRPNLKSLEIISGGLPDSVVE  211 (362)
T ss_dssp             TTCSEEEECCCCT---TTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB--CCS-C-BCTTCSEEEEECSBCCHHHHH
T ss_pred             chhhheeecCcch---hhcccccccccCHHHHHhcCCCCcEEEEeCCCCce--ecc-c-cCCCCcEEEEecCCCChHHHH
Confidence            5788888876311   00112    12455667888999999999884222  343 3 388999999998887644333


Q ss_pred             CCC--CCCCCcEEEccC--CccccC-----Ccccc--CCCCCCCEEEcCCccccCC-cchHHHhhccccccccccccccC
Q 044082          126 QLG--NLTNLQSLNLGY--NSLYVS-----KFGWL--SHLNKLTQLDLDFVDLSEA-SDWLQVITSLASLRDLYLASSTL  193 (243)
Q Consensus       126 ~l~--~l~~L~~L~l~~--n~l~~~-----~~~~l--~~l~~L~~L~l~~n~l~~~-~~~~~~~~~l~~L~~L~l~~n~~  193 (243)
                      .+.  .+|+|++|+++.  +...+.     +...+  ..+++|++|++.+|.+.+. .........+++|++|+|+.|.+
T Consensus       212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L  291 (362)
T 2ra8_A          212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL  291 (362)
T ss_dssp             HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC
T ss_pred             HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC
Confidence            333  689999999853  221111     11122  2478999999999998764 11111123578999999999988


Q ss_pred             CCCCC--CCcccccCCCCCcEEECCCCccccccchhHHhhhccCceeeCCC
Q 044082          194 PSINR--PSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNS  242 (243)
Q Consensus       194 ~~~~~--~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~  242 (243)
                      .....  ....+..+ ++|+.|+++.|.|++.....+...-  ..+++++.
T Consensus       292 ~d~G~~~L~~~L~~l-~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~  339 (362)
T 2ra8_A          292 TDEGARLLLDHVDKI-KHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSD  339 (362)
T ss_dssp             BHHHHHHHHTTHHHH-TTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCS
T ss_pred             ChHHHHHHHhhcccC-CcceEEECCCCcCCHHHHHHHHHHc--CCEEEecC
Confidence            75321  00122344 8999999999999876666565521  24466654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.76  E-value=7.3e-10  Score=83.52  Aligned_cols=92  Identities=15%  Similarity=0.038  Sum_probs=46.5

Q ss_pred             CCCCcEEEccCCccccCC----ccccCCCCCCCEEEcCCccccCC--cchHHHhhcccccccccc--ccccCCCCCC--C
Q 044082          130 LTNLQSLNLGYNSLYVSK----FGWLSHLNKLTQLDLDFVDLSEA--SDWLQVITSLASLRDLYL--ASSTLPSINR--P  199 (243)
Q Consensus       130 l~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~l~~n~l~~~--~~~~~~~~~l~~L~~L~l--~~n~~~~~~~--~  199 (243)
                      .++|++|++++|.+....    ...+...++|++|++++|.+.+.  ..+...+...++|++|++  ++|.+.....  .
T Consensus        64 ~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l  143 (185)
T 1io0_A           64 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEI  143 (185)
T ss_dssp             CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHH
T ss_pred             CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHH
Confidence            344455555555444321    12233335566666666666544  223344555556666666  5565543211  0


Q ss_pred             CcccccCCCCCcEEECCCCcccc
Q 044082          200 SLSSMNSSTSLALLDLSSCGLSN  222 (243)
Q Consensus       200 ~~~~~~~~~~L~~L~L~~n~i~~  222 (243)
                      ...+... ++|++|++++|.+..
T Consensus       144 ~~~L~~n-~~L~~L~L~~n~i~~  165 (185)
T 1io0_A          144 ANMLEKN-TTLLKFGYHFTQQGP  165 (185)
T ss_dssp             HHHHHHC-SSCCEEECCCSSHHH
T ss_pred             HHHHHhC-CCcCEEeccCCCCCh
Confidence            0122333 678888888887753

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.76  E-value=3.1e-08  Score=83.51  Aligned_cols=154  Identities=8%  Similarity=0.086  Sum_probs=102.9

Q ss_pred             hhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccc-----cCCcccc
Q 044082           77 SLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLY-----VSKFGWL  151 (243)
Q Consensus        77 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~-----~~~~~~l  151 (243)
                      .|.++++|+.+++..+ ++.. -...|.. .+|+.+.+. +.+.......|..+++|+.+.+.++.+.     ......|
T Consensus       221 aF~~~~~L~~l~l~~~-l~~I-~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF  296 (401)
T 4fdw_A          221 AFLKTSQLKTIEIPEN-VSTI-GQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCL  296 (401)
T ss_dssp             TTTTCTTCCCEECCTT-CCEE-CTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTT
T ss_pred             HhhCCCCCCEEecCCC-ccCc-ccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHh
Confidence            4555556666666543 2221 2233333 566666663 3344344567889999999999888764     3456778


Q ss_pred             CCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhh
Q 044082          152 SHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKI  231 (243)
Q Consensus       152 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l  231 (243)
                      ..+.+|+.+.+. +.+..++.  ..+..+.+|+.+.+..+ ++.+..  ..+..+  +|+.+++.+|.+.......+..+
T Consensus       297 ~~c~~L~~l~l~-~~i~~I~~--~aF~~c~~L~~l~lp~~-l~~I~~--~aF~~~--~L~~l~l~~n~~~~l~~~~F~~~  368 (401)
T 4fdw_A          297 EGCPKLARFEIP-ESIRILGQ--GLLGGNRKVTQLTIPAN-VTQINF--SAFNNT--GIKEVKVEGTTPPQVFEKVWYGF  368 (401)
T ss_dssp             TTCTTCCEECCC-TTCCEECT--TTTTTCCSCCEEEECTT-CCEECT--TSSSSS--CCCEEEECCSSCCBCCCSSCCCS
T ss_pred             hCCccCCeEEeC-CceEEEhh--hhhcCCCCccEEEECcc-ccEEcH--HhCCCC--CCCEEEEcCCCCcccccccccCC
Confidence            999999999998 45777643  37889999999999655 555544  344443  89999999998875445556666


Q ss_pred             hccCceeeCCC
Q 044082          232 SSNLLALDLNS  242 (243)
Q Consensus       232 ~~~L~~L~l~~  242 (243)
                      +..++.+.+..
T Consensus       369 ~~~l~~l~vp~  379 (401)
T 4fdw_A          369 PDDITVIRVPA  379 (401)
T ss_dssp             CTTCCEEEECG
T ss_pred             CCCccEEEeCH
Confidence            53377776643

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.74  E-value=3.9e-09  Score=79.50  Aligned_cols=117  Identities=17%  Similarity=0.111  Sum_probs=84.7

Q ss_pred             cCCCCCCCCcEEEccCC-ccccC----CccccCCCCCCCEEEcCCccccCC--cchHHHhhccccccccccccccCCCCC
Q 044082          125 YQLGNLTNLQSLNLGYN-SLYVS----KFGWLSHLNKLTQLDLDFVDLSEA--SDWLQVITSLASLRDLYLASSTLPSIN  197 (243)
Q Consensus       125 ~~l~~l~~L~~L~l~~n-~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~--~~~~~~~~~l~~L~~L~l~~n~~~~~~  197 (243)
                      ..+...+.|++|++++| .+...    +...+...++|++|++++|.+.+.  ..+...+...++|++|+|++|.+....
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g  109 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG  109 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence            34456677888888877 76543    234456678999999999999875  335556777789999999999987532


Q ss_pred             C--CCcccccCCCCCcEEEC--CCCccccccc----hhHHhhhccCceeeCCCC
Q 044082          198 R--PSLSSMNSSTSLALLDL--SSCGLSNSAY----HWLFKISSNLLALDLNSN  243 (243)
Q Consensus       198 ~--~~~~~~~~~~~L~~L~L--~~n~i~~~~~----~~l~~l~~~L~~L~l~~N  243 (243)
                      .  ....+... ++|++|+|  ++|.|++...    +.+...++ |++|++++|
T Consensus       110 ~~~l~~~L~~n-~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~-L~~L~L~~n  161 (185)
T 1io0_A          110 ILALVEALQSN-TSLIELRIDNQSQPLGNNVEMEIANMLEKNTT-LLKFGYHFT  161 (185)
T ss_dssp             HHHHHHGGGGC-SSCCEEECCCCSSCCCHHHHHHHHHHHHHCSS-CCEEECCCS
T ss_pred             HHHHHHHHHhC-CCceEEEecCCCCCCCHHHHHHHHHHHHhCCC-cCEEeccCC
Confidence            1  00234445 78999999  8899987543    44555577 999999987

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.51  E-value=3.7e-08  Score=78.20  Aligned_cols=83  Identities=25%  Similarity=0.219  Sum_probs=62.4

Q ss_pred             cCCCCCcEEecCCccccc--cCCcCCCCCCCCcEEEccCCccccC-CccccCCCCCCCEEEcCCccccCC-cc----hHH
Q 044082          104 GFFTKLRFLDLSLANFSG--RIPYQLGNLTNLQSLNLGYNSLYVS-KFGWLSHLNKLTQLDLDFVDLSEA-SD----WLQ  175 (243)
Q Consensus       104 ~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~-~~----~~~  175 (243)
                      ..+++|++|++++|.+.+  .++..+..+++|+.|++++|.+++. ....+..+ +|+.|++.+|.+.+. +.    ...
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence            468899999999999986  3445566899999999999999864 12233444 899999999999763 21    123


Q ss_pred             Hhhccccccccc
Q 044082          176 VITSLASLRDLY  187 (243)
Q Consensus       176 ~~~~l~~L~~L~  187 (243)
                      .+..+++|+.|+
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence            567888998876

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.49  E-value=2.1e-07  Score=73.79  Aligned_cols=81  Identities=22%  Similarity=0.209  Sum_probs=49.6

Q ss_pred             CCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCC--CCcEEECCCCccccccc-----
Q 044082          153 HLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSST--SLALLDLSSCGLSNSAY-----  225 (243)
Q Consensus       153 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~--~L~~L~L~~n~i~~~~~-----  225 (243)
                      ++++|+.|+|++|.+.+.+.++..+..+++|+.|+|++|.+.+..    .+..+ .  +|++|+|++|.+++.+|     
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~----~l~~l-~~l~L~~L~L~~Npl~~~~~~~~~y  242 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER----ELDKI-KGLKLEELWLDGNSLCDTFRDQSTY  242 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG----GGGGG-TTSCCSEEECTTSTTGGGCSSHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch----hhhhc-ccCCcceEEccCCcCccccCcchhH
Confidence            455666777777776665433445566677777777777776542    22222 3  67777777777765443     


Q ss_pred             --hhHHhhhccCceee
Q 044082          226 --HWLFKISSNLLALD  239 (243)
Q Consensus       226 --~~l~~l~~~L~~L~  239 (243)
                        ..+..+++ |+.||
T Consensus       243 ~~~il~~~P~-L~~LD  257 (267)
T 3rw6_A          243 ISAIRERFPK-LLRLD  257 (267)
T ss_dssp             HHHHHHHCTT-CCEES
T ss_pred             HHHHHHHCcc-cCeEC
Confidence              23566676 77766

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.34  E-value=6.8e-08  Score=71.62  Aligned_cols=34  Identities=15%  Similarity=0.066  Sum_probs=17.0

Q ss_pred             CCcEEEccCCc-cccCCccccCCCCCCCEEEcCCc
Q 044082          132 NLQSLNLGYNS-LYVSKFGWLSHLNKLTQLDLDFV  165 (243)
Q Consensus       132 ~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n  165 (243)
                      +|++|++++|. ++......+..+++|++|+++++
T Consensus       115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c  149 (176)
T 3e4g_A          115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDL  149 (176)
T ss_dssp             HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESC
T ss_pred             CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCC
Confidence            45555555542 44433344445555555555555

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.28  E-value=1.8e-07  Score=69.38  Aligned_cols=85  Identities=14%  Similarity=0.215  Sum_probs=44.2

Q ss_pred             CCcEEEccCCccccCCccccCCCCCCCEEEcCCcc-ccCCcchHHHhhcc----cccccccccccc-CCCCCCCCccccc
Q 044082          132 NLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVD-LSEASDWLQVITSL----ASLRDLYLASST-LPSINRPSLSSMN  205 (243)
Q Consensus       132 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l----~~L~~L~l~~n~-~~~~~~~~~~~~~  205 (243)
                      .|++|+++++.++......+..+++|+.|++++|. +++..  ...+..+    ++|++|++++|. ++....  ..+..
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~g--L~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl--~~L~~  137 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGC--LERLSQLENLQKSMLEMEIISCGNVTDKGI--IALHH  137 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHH--HHHHHTCHHHHHHCCEEEEESCTTCCHHHH--HHGGG
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHH--HHHHHhcccccCCCCEEEcCCCCcCCHHHH--HHHhc
Confidence            45555665555555444455556666666666653 44431  1233332    356666666653 443222  23444


Q ss_pred             CCCCCcEEECCCCc-cc
Q 044082          206 SSTSLALLDLSSCG-LS  221 (243)
Q Consensus       206 ~~~~L~~L~L~~n~-i~  221 (243)
                      + ++|+.|+++++. |+
T Consensus       138 ~-~~L~~L~L~~c~~It  153 (176)
T 3e4g_A          138 F-RNLKYLFLSDLPGVK  153 (176)
T ss_dssp             C-TTCCEEEEESCTTCC
T ss_pred             C-CCCCEEECCCCCCCC
Confidence            4 666666666653 44

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.93  E-value=3.2e-06  Score=63.72  Aligned_cols=119  Identities=12%  Similarity=0.082  Sum_probs=75.0

Q ss_pred             hhcCCCCCcEEecCCc-ccccc----CCcCCCCCCCCcEEEccCCccccCCccc----cCCCCCCCEEEcCCccccCC--
Q 044082          102 FIGFFTKLRFLDLSLA-NFSGR----IPYQLGNLTNLQSLNLGYNSLYVSKFGW----LSHLNKLTQLDLDFVDLSEA--  170 (243)
Q Consensus       102 ~~~~l~~L~~L~l~~~-~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~----l~~l~~L~~L~l~~n~l~~~--  170 (243)
                      .+..-+.|++|+++++ .+.+.    +...+..-..|+.|++++|.+.......    +..-.+|+.|+|++|.|.+.  
T Consensus        36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga  115 (197)
T 1pgv_A           36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL  115 (197)
T ss_dssp             HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred             HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence            3445678888999875 66532    2344556677888888888887543333    33456788888888888766  


Q ss_pred             cchHHHhhccccccccccccccCCCCCC-----CCcccccCCCCCcEEECCCCccc
Q 044082          171 SDWLQVITSLASLRDLYLASSTLPSINR-----PSLSSMNSSTSLALLDLSSCGLS  221 (243)
Q Consensus       171 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~-----~~~~~~~~~~~L~~L~L~~n~i~  221 (243)
                      ..+.+.+..-..|++|+|+++....+..     ....+..- ++|+.|+++.|.+.
T Consensus       116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N-~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEEN-ESLLRVGISFASME  170 (197)
T ss_dssp             HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHC-SSCCEEECCCCCHH
T ss_pred             HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhC-CCcCeEeccCCCcc
Confidence            3445566666778888887653211110     00123334 67888888777654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.71  E-value=0.00016  Score=60.54  Aligned_cols=144  Identities=12%  Similarity=0.059  Sum_probs=76.6

Q ss_pred             hccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCC
Q 044082           78 LLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKL  157 (243)
Q Consensus        78 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  157 (243)
                      +..+..++.+.+..+...-  ....+..+..++.+......+.   ...+..+.+|+.+.+..+ ++.....+|..+.+|
T Consensus       249 f~~~~~l~~~~~~~~~~~i--~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L  322 (394)
T 4fs7_A          249 FYGCTDLESISIQNNKLRI--GGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSL  322 (394)
T ss_dssp             TTTCSSCCEEEECCTTCEE--CSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTC
T ss_pred             ccccccceeEEcCCCccee--eccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCC
Confidence            3444445555444432211  2233444555555544443222   123556667777777654 444445567777777


Q ss_pred             CEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCce
Q 044082          158 TQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLA  237 (243)
Q Consensus       158 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~  237 (243)
                      +.+++..+ ++.++.  .++..+.+|+.+.+..+ ++.+..  ..+..+ .+|+.+++..+ ++ .+...+.++.+ |+.
T Consensus       323 ~~i~lp~~-v~~I~~--~aF~~c~~L~~i~lp~~-l~~I~~--~aF~~C-~~L~~i~lp~~-~~-~~~~~F~~c~~-L~~  392 (394)
T 4fs7_A          323 VSIDLPYL-VEEIGK--RSFRGCTSLSNINFPLS-LRKIGA--NAFQGC-INLKKVELPKR-LE-QYRYDFEDTTK-FKW  392 (394)
T ss_dssp             CEECCCTT-CCEECT--TTTTTCTTCCEECCCTT-CCEECT--TTBTTC-TTCCEEEEEGG-GG-GGGGGBCTTCE-EEE
T ss_pred             CEEEeCCc-ccEEhH--HhccCCCCCCEEEECcc-ccEehH--HHhhCC-CCCCEEEECCC-CE-EhhheecCCCC-CcE
Confidence            77777543 544432  26677777777777655 444444  455555 77777777543 22 22334555555 544

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.56  E-value=2e-05  Score=59.33  Aligned_cols=117  Identities=14%  Similarity=0.035  Sum_probs=70.7

Q ss_pred             hhhccCCCCcEEEccCC-CCCCC---CcchhhcCCCCCcEEecCCccccccCCcCCC----CCCCCcEEEccCCccccCC
Q 044082           76 SSLLELQHLNYLDLSVN-DFLGN---PIPEFIGFFTKLRFLDLSLANFSGRIPYQLG----NLTNLQSLNLGYNSLYVSK  147 (243)
Q Consensus        76 ~~~~~l~~L~~L~l~~n-~l~~~---~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~----~l~~L~~L~l~~n~l~~~~  147 (243)
                      ..+.+-+.|+.|+++++ .+...   .+...+...+.|+.|+|++|.+.+.....++    .-..|++|++++|.++...
T Consensus        35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G  114 (197)
T 1pgv_A           35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL  114 (197)
T ss_dssp             HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred             HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence            33445567777888775 55422   1234455667788888888877754433333    4467888888888876543


Q ss_pred             c----cccCCCCCCCEEEcCCc---cccCC--cchHHHhhcccccccccccccc
Q 044082          148 F----GWLSHLNKLTQLDLDFV---DLSEA--SDWLQVITSLASLRDLYLASST  192 (243)
Q Consensus       148 ~----~~l~~l~~L~~L~l~~n---~l~~~--~~~~~~~~~l~~L~~L~l~~n~  192 (243)
                      .    +.+..-..|+.|++++|   .+.+.  ..+.+.+..-++|+.|+++.+.
T Consensus       115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            2    33445566888888754   33332  2344556666778877776554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.55  E-value=0.0003  Score=58.78  Aligned_cols=109  Identities=15%  Similarity=0.093  Sum_probs=53.3

Q ss_pred             hhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccc
Q 044082          102 FIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLA  181 (243)
Q Consensus       102 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~  181 (243)
                      .|..+..|+.+.+..+... .....+..+..|+.+.+.. .++......|..+.+|+.+.+..+ ++.+.+  .++..+.
T Consensus       260 aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~--~aF~~C~  334 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILD--DAFAGCE  334 (394)
T ss_dssp             TTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECT--TTTTTCT
T ss_pred             eeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehH--hHhhCCC
Confidence            3455555666555443322 3334455555666665542 233333344555566666665432 333322  2455556


Q ss_pred             cccccccccccCCCCCCCCcccccCCCCCcEEECCCCc
Q 044082          182 SLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCG  219 (243)
Q Consensus       182 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~  219 (243)
                      +|+.+.+..+ ++.+..  ..+..+ .+|+.+++.++.
T Consensus       335 ~L~~i~ip~s-v~~I~~--~aF~~C-~~L~~i~~~~~~  368 (394)
T 4gt6_A          335 QLERIAIPSS-VTKIPE--SAFSNC-TALNNIEYSGSR  368 (394)
T ss_dssp             TCCEEEECTT-CCBCCG--GGGTTC-TTCCEEEESSCH
T ss_pred             CCCEEEECcc-cCEEhH--hHhhCC-CCCCEEEECCce
Confidence            6666655433 333333  344444 566666665553

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.53  E-value=0.00062  Score=56.44  Aligned_cols=83  Identities=20%  Similarity=0.244  Sum_probs=36.1

Q ss_pred             CCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccC
Q 044082          127 LGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNS  206 (243)
Q Consensus       127 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~  206 (243)
                      +..+..|+.+.+..+ +.......+..+.+|+.+.+..+.+..+++  ..+..+.+|+.+.+..+ ++.+..  .++..+
T Consensus       259 F~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~--~aF~~c~~L~~i~lp~~-l~~I~~--~aF~~C  332 (379)
T 4h09_A          259 LQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEP--RVFMDCVKLSSVTLPTA-LKTIQV--YAFKNC  332 (379)
T ss_dssp             TTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECT--TTTTTCTTCCEEECCTT-CCEECT--TTTTTC
T ss_pred             cceeehhcccccccc-ceeccccccccccccccccccccccceehh--hhhcCCCCCCEEEcCcc-ccEEHH--HHhhCC
Confidence            444444544444332 222223334455555555555544444422  24455555555555332 232222  233333


Q ss_pred             CCCCcEEECC
Q 044082          207 STSLALLDLS  216 (243)
Q Consensus       207 ~~~L~~L~L~  216 (243)
                       .+|+.+.+.
T Consensus       333 -~~L~~i~ip  341 (379)
T 4h09_A          333 -KALSTISYP  341 (379)
T ss_dssp             -TTCCCCCCC
T ss_pred             -CCCCEEEEC
Confidence             455555443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.49  E-value=0.00024  Score=59.43  Aligned_cols=111  Identities=11%  Similarity=0.155  Sum_probs=67.6

Q ss_pred             CCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcc
Q 044082          123 IPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLS  202 (243)
Q Consensus       123 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  202 (243)
                      ....+..+..|+.+.+..+... .....+..+..|+.+.+. +.+...++  ..+..+.+|+.+.+..+ ++.+..  ..
T Consensus       257 ~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~--~aF~~c~~L~~i~lp~~-v~~I~~--~a  329 (394)
T 4gt6_A          257 ETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPE--SVFAGCISLKSIDIPEG-ITQILD--DA  329 (394)
T ss_dssp             CTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECT--TTTTTCTTCCEEECCTT-CCEECT--TT
T ss_pred             ccceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCc--eeecCCCCcCEEEeCCc-ccEehH--hH
Confidence            3445667777777777655332 334556677777777775 34444433  26677777777777653 444433  45


Q ss_pred             cccCCCCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082          203 SMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       203 ~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N  243 (243)
                      +..+ .+|+.+.+..+ ++.....+|.++.+ |+.+++.+|
T Consensus       330 F~~C-~~L~~i~ip~s-v~~I~~~aF~~C~~-L~~i~~~~~  367 (394)
T 4gt6_A          330 FAGC-EQLERIAIPSS-VTKIPESAFSNCTA-LNNIEYSGS  367 (394)
T ss_dssp             TTTC-TTCCEEEECTT-CCBCCGGGGTTCTT-CCEEEESSC
T ss_pred             hhCC-CCCCEEEECcc-cCEEhHhHhhCCCC-CCEEEECCc
Confidence            5555 77888777544 54333456667777 777776653

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.43  E-value=0.00052  Score=57.33  Aligned_cols=84  Identities=18%  Similarity=0.121  Sum_probs=56.0

Q ss_pred             ccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHH
Q 044082          150 WLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLF  229 (243)
Q Consensus       150 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~  229 (243)
                      .+..+.+|+.+.+..+ +..+++  ..+..+.+|+.+.+..+ ++.+..  ..+..+ .+|+.+.+..+ ++.....+|.
T Consensus       292 ~F~~~~~L~~i~l~~~-i~~I~~--~aF~~c~~L~~i~lp~~-v~~I~~--~aF~~c-~~L~~i~lp~~-l~~I~~~aF~  363 (394)
T 4fs7_A          292 TFYGCSSLTEVKLLDS-VKFIGE--EAFESCTSLVSIDLPYL-VEEIGK--RSFRGC-TSLSNINFPLS-LRKIGANAFQ  363 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CCEECT--TTTTTCTTCCEECCCTT-CCEECT--TTTTTC-TTCCEECCCTT-CCEECTTTBT
T ss_pred             cccccccccccccccc-cceech--hhhcCCCCCCEEEeCCc-ccEEhH--HhccCC-CCCCEEEECcc-ccEehHHHhh
Confidence            3555667777777543 444432  36778888888888643 554544  456666 88999998766 5534455777


Q ss_pred             hhhccCceeeCCC
Q 044082          230 KISSNLLALDLNS  242 (243)
Q Consensus       230 ~l~~~L~~L~l~~  242 (243)
                      ++.+ |+++++..
T Consensus       364 ~C~~-L~~i~lp~  375 (394)
T 4fs7_A          364 GCIN-LKKVELPK  375 (394)
T ss_dssp             TCTT-CCEEEEEG
T ss_pred             CCCC-CCEEEECC
Confidence            8888 88887754

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.38  E-value=0.001  Score=55.18  Aligned_cols=110  Identities=12%  Similarity=0.080  Sum_probs=81.0

Q ss_pred             hhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCC
Q 044082           76 SSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLN  155 (243)
Q Consensus        76 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~  155 (243)
                      ..+.++..|+.+.+..+ ++.. -...+..+.+|+.+.+..+ +.......+..+.+|+.+.+.++.++......|.++.
T Consensus       234 ~~f~~~~~L~~i~lp~~-v~~I-~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~  310 (379)
T 4h09_A          234 GAFYGMKALDEIAIPKN-VTSI-GSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCV  310 (379)
T ss_dssp             TTTTTCSSCCEEEECTT-CCEE-CTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCT
T ss_pred             ccccCCccceEEEcCCC-ccEe-Cccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCC
Confidence            45667777888877665 3332 3456677888888888654 4424445678899999999998888777778899999


Q ss_pred             CCCEEEcCCccccCCcchHHHhhccccccccccccc
Q 044082          156 KLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASS  191 (243)
Q Consensus       156 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n  191 (243)
                      +|+.+.+..+ ++.+..  .++..+.+|+.+.+..+
T Consensus       311 ~L~~i~lp~~-l~~I~~--~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          311 KLSSVTLPTA-LKTIQV--YAFKNCKALSTISYPKS  343 (379)
T ss_dssp             TCCEEECCTT-CCEECT--TTTTTCTTCCCCCCCTT
T ss_pred             CCCEEEcCcc-ccEEHH--HHhhCCCCCCEEEECCc
Confidence            9999999754 555543  37889999999988654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.62  E-value=0.006  Score=42.60  Aligned_cols=38  Identities=24%  Similarity=0.112  Sum_probs=24.6

Q ss_pred             CCcEEEccCCccccCCccccCCCCCCCEEEcCCccccC
Q 044082          132 NLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSE  169 (243)
Q Consensus       132 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  169 (243)
                      +|++|+|++|+++...+..|..+++|++|+|.+|.+.=
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C   69 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC   69 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence            46666666666665555556666677777777776653

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.45  E-value=0.0063  Score=42.49  Aligned_cols=36  Identities=19%  Similarity=0.226  Sum_probs=21.4

Q ss_pred             CCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccc
Q 044082           83 HLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANF  119 (243)
Q Consensus        83 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~  119 (243)
                      ++++|+|++|.++.. .+..|..+++|++|+|++|.+
T Consensus        32 ~l~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           32 DTTELVLTGNNLTAL-PPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TCSEEECTTSCCSSC-CTTTGGGCTTCCEEECCSSCC
T ss_pred             CCCEEECCCCcCCcc-ChhhhhhccccCEEEecCCCe
Confidence            466666666666654 444555566666666666544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	243
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.001
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-04

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 56.3 bits (134), Expect = 5e-10
 Identities = 56/170 (32%), Positives = 79/170 (46%), Gaps = 14/170 (8%)

Query: 3   CIEKERQALLMFKQGLVDDCGYLSSWGSDEGRKDCC--KWSGVQCSN--RTGHVIMLNLK 58
           C  +++QALL  K+ L +    LSSW       DCC   W GV C    +T  V  L+L 
Sbjct: 3   CNPQDKQALLQIKKDLGNP-TTLSSWLPTT---DCCNRTWLGVLCDTDTQTYRVNNLDLS 58

Query: 59  YKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLAN 118
                   N P    I SSL  L +LN+L +   + L  PIP  I   T+L +L ++  N
Sbjct: 59  GL------NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN 112

Query: 119 FSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLS 168
            SG IP  L  +  L +L+  YN+L  +    +S L  L  +  D   +S
Sbjct: 113 VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 43.6 bits (101), Expect = 8e-06
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 82  QHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYN 141
           ++LN LDL  N   G  +P+ +     L  L++S  N  G IP Q GNL          N
Sbjct: 244 KNLNGLDLRNNRIYG-TLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANN 301

Query: 142 SL 143
             
Sbjct: 302 KC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 37.0 bits (84), Expect = 0.001
 Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 1/51 (1%)

Query: 113 DLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLD 163
           DL      G +P  L  L  L SLN+ +N+L   +     +L +       
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL-CGEIPQGGNLQRFDVSAYA 299

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.8 bits (107), Expect = 2e-06
 Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 7/83 (8%)

Query: 81  LQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGY 140
           L++L YL L  N+         +   TKL+ L  +    S      L NLTN+  L+ G+
Sbjct: 306 LKNLTYLTLYFNNISDIS---PVSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGH 360

Query: 141 NSLYVSKFGWLSHLNKLTQLDLD 163
           N +  S    L++L ++TQL L+
Sbjct: 361 NQI--SDLTPLANLTRITQLGLN 381

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.1 bits (95), Expect = 6e-05
 Identities = 15/66 (22%), Positives = 21/66 (31%), Gaps = 5/66 (7%)

Query: 76  SSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQS 135
           S +  L  L  L  + N          +   T + +L       S   P  L NLT +  
Sbjct: 323 SPVSSLTKLQRLFFANNKVSD---VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQ 377

Query: 136 LNLGYN 141
           L L   
Sbjct: 378 LGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 1e-04
 Identities = 43/168 (25%), Positives = 68/168 (40%), Gaps = 19/168 (11%)

Query: 76  SSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQS 135
            +L  L +L  LDL+ N          +   TKL  L L     S   P  L  LT L +
Sbjct: 235 GTLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQISNISP--LAGLTALTN 289

Query: 136 LNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPS 195
           L L  N L         +L  LT L L F ++S+ S     ++SL  L+ L+ A++ +  
Sbjct: 290 LELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP----VSSLTKLQRLFFANNKVSD 343

Query: 196 INRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 243
           +     SS+ + T++  L      +S+          + +  L LN  
Sbjct: 344 V-----SSLANLTNINWLSAGHNQISDLTP---LANLTRITQLGLNDQ 383

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 1e-04
 Identities = 13/94 (13%), Positives = 25/94 (26%), Gaps = 4/94 (4%)

Query: 84  LNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGR----IPYQLGNLTNLQSLNLG 139
           +  LD+   +       E +    + + + L     +      I   L     L  LNL 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 140 YNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDW 173
            N L       +    +     +  + L      
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 97

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.6 bits (91), Expect = 2e-04
 Identities = 32/206 (15%), Positives = 55/206 (26%), Gaps = 34/206 (16%)

Query: 38  CKWSGVQCSNRTGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGN 97
           C    VQCS+     +  +L                             LDL  N     
Sbjct: 10  CHLRVVQCSDLGLEKVPKDL-----------------------PPDTALLDLQNNKITEI 46

Query: 98  PIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKL 157
                      L  L L     S   P     L  L+ L L  N L          L +L
Sbjct: 47  K-DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQEL 105

Query: 158 TQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSS 217
              + +   + ++         +  L    L SS + +       +      L+ + ++ 
Sbjct: 106 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN------GAFQGMKKLSYIRIAD 159

Query: 218 CGLSNSAYHWLFKISSNLLALDLNSN 243
             ++         +  +L  L L+ N
Sbjct: 160 TNIT----TIPQGLPPSLTELHLDGN 181

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	243
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.87
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.85
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.81
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.78
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.76
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.76
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.73
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.72
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.71
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.7
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.67
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.66
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.66
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.64
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.64
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.6
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.58
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.57
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.57
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.49
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.44
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.43
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.41
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.4
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.3
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.3
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.28
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.15
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.0
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.93
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.8
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.69
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.58
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.26
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.15
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.95
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.69
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.55

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=4.1e-34  Score=232.90  Aligned_cols=223  Identities=31%  Similarity=0.399  Sum_probs=157.6

Q ss_pred             CCHHHHHHHHHhhhcccCCCCCCCCCCCCCCCCCCc--ccceEEecCCC--CceEEEecCCCCCCCCCCCCccc--ccch
Q 044082            3 CIEKERQALLMFKQGLVDDCGYLSSWGSDEGRKDCC--KWSGVQCSNRT--GHVIMLNLKYKVDPVCPNRPLRG--NINS   76 (243)
Q Consensus         3 ~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~--~~~~~~c~~~~--~~l~~L~l~~~~~~~~~~~~~~~--~~~~   76 (243)
                      |.++|++||++||+++.+|. .+++|.   .+.+||  .|.||+|+...  .+|+.|||++        +.+.|  .+|+
T Consensus         3 c~~~e~~aLl~~k~~~~~~~-~l~sW~---~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~--------~~l~g~~~lp~   70 (313)
T d1ogqa_           3 CNPQDKQALLQIKKDLGNPT-TLSSWL---PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSG--------LNLPKPYPIPS   70 (313)
T ss_dssp             SCHHHHHHHHHHHHHTTCCG-GGTTCC---TTSCTTTTCSTTEEECCSSSCCCEEEEEEEC--------CCCSSCEECCG
T ss_pred             CCHHHHHHHHHHHHHCCCCC-cCCCCC---CCCCCCCCcCCCeEEeCCCCcEEEEEEECCC--------CCCCCCCCCCh
Confidence            89999999999999997775 578998   578999  59999998644  4899999999        47776  4788


Q ss_pred             hhccCCCCcEEEccC-CCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCC
Q 044082           77 SLLELQHLNYLDLSV-NDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLN  155 (243)
Q Consensus        77 ~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~  155 (243)
                      .++++++|++|++++ |.+++. +|+.++.+++|++|++++|.+.+..+..+..+..|++++++.|.+....|..+..++
T Consensus        71 ~l~~L~~L~~L~Ls~~N~l~g~-iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~  149 (313)
T d1ogqa_          71 SLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP  149 (313)
T ss_dssp             GGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT
T ss_pred             HHhcCccccccccccccccccc-cccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCc
Confidence            899999999999986 778876 888899999999999998888766666666677777777777776666666666666


Q ss_pred             CCCEEEcCCccccCC-cch---------------------------------------------HHHhhccccccccccc
Q 044082          156 KLTQLDLDFVDLSEA-SDW---------------------------------------------LQVITSLASLRDLYLA  189 (243)
Q Consensus       156 ~L~~L~l~~n~l~~~-~~~---------------------------------------------~~~~~~l~~L~~L~l~  189 (243)
                      .++++++++|.+.+. |..                                             +..+..+++++.++++
T Consensus       150 ~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~  229 (313)
T d1ogqa_         150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLA  229 (313)
T ss_dssp             TCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECC
T ss_pred             ccceeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            666666666665432 220                                             1111122223333333


Q ss_pred             cccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082          190 SSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       190 ~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N  243 (243)
                      +|.+.+.++   .+... ++|+.|++++|+++|.+|++++++++ |++|++++|
T Consensus       230 ~~~l~~~~~---~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~L~~-L~~L~Ls~N  278 (313)
T d1ogqa_         230 KNSLAFDLG---KVGLS-KNLNGLDLRNNRIYGTLPQGLTQLKF-LHSLNVSFN  278 (313)
T ss_dssp             SSEECCBGG---GCCCC-TTCCEEECCSSCCEECCCGGGGGCTT-CCEEECCSS
T ss_pred             ccccccccc---ccccc-cccccccCccCeecccCChHHhCCCC-CCEEECcCC
Confidence            333322221   23333 67777777777777777777777776 777777765

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=6.1e-22  Score=156.86  Aligned_cols=175  Identities=23%  Similarity=0.219  Sum_probs=154.2

Q ss_pred             CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCC
Q 044082           50 GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN  129 (243)
Q Consensus        50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~  129 (243)
                      ..++.|+|++        |.+++..+..|.++++|++|++++|.++.  ++ .++.+++|++|++++|.+. ..+..+..
T Consensus        31 ~~l~~L~Ls~--------N~i~~l~~~~f~~l~~L~~L~L~~N~l~~--l~-~~~~l~~L~~L~Ls~N~l~-~~~~~~~~   98 (266)
T d1p9ag_          31 KDTTILHLSE--------NLLYTFSLATLMPYTRLTQLNLDRAELTK--LQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQT   98 (266)
T ss_dssp             TTCCEEECTT--------SCCSEEEGGGGTTCTTCCEEECTTSCCCE--EE-CCSCCTTCCEEECCSSCCS-SCCCCTTT
T ss_pred             cCCCEEECcC--------CcCCCcCHHHhhccccccccccccccccc--cc-ccccccccccccccccccc-cccccccc
Confidence            4789999999        58887666789999999999999999976  44 3578999999999999998 56777889


Q ss_pred             CCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCC
Q 044082          130 LTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTS  209 (243)
Q Consensus       130 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~  209 (243)
                      +++|++|++++|.+....+..+..+.+++.|++.+|.+...+.  ..+..++.|+.+++++|+++++.+  ..+..+ ++
T Consensus        99 l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~--~~~~~l~~l~~l~l~~N~l~~~~~--~~~~~l-~~  173 (266)
T d1p9ag_          99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP--GLLTPTPKLEKLSLANNNLTELPA--GLLNGL-EN  173 (266)
T ss_dssp             CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT--TTTTTCTTCCEEECTTSCCSCCCT--TTTTTC-TT
T ss_pred             ccccccccccccccceeeccccccccccccccccccccceecc--ccccccccchhcccccccccccCc--cccccc-cc
Confidence            9999999999999988777778889999999999999998853  367788999999999999998877  566666 99


Q ss_pred             CcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082          210 LALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       210 L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N  243 (243)
                      |++|+|++|+|+ .+|+.+..+++ |+.|++++|
T Consensus       174 L~~L~Ls~N~L~-~lp~~~~~~~~-L~~L~L~~N  205 (266)
T d1p9ag_         174 LDTLLLQENSLY-TIPKGFFGSHL-LPFAFLHGN  205 (266)
T ss_dssp             CCEEECCSSCCC-CCCTTTTTTCC-CSEEECCSC
T ss_pred             cceeecccCCCc-ccChhHCCCCC-CCEEEecCC
Confidence            999999999999 79998999998 999999987

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.87  E-value=1.7e-22  Score=163.70  Aligned_cols=178  Identities=19%  Similarity=0.189  Sum_probs=138.3

Q ss_pred             CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCC
Q 044082           50 GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN  129 (243)
Q Consensus        50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~  129 (243)
                      ..++.|||+++       |.+.|.+|+.++++++|++|++++|.+.+. .+..+..+.+|++++++.|.+.+.+|..+..
T Consensus        76 ~~L~~L~Ls~~-------N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~-~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~  147 (313)
T d1ogqa_          76 PYLNFLYIGGI-------NNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLVTLDFSYNALSGTLPPSISS  147 (313)
T ss_dssp             TTCSEEEEEEE-------TTEESCCCGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCCEEECCSSEEESCCCGGGGG
T ss_pred             ccccccccccc-------cccccccccccccccccchhhhcccccccc-ccccccchhhhcccccccccccccCchhhcc
Confidence            67899999875       689999999999999999999999998775 5666667777777777777666666666666


Q ss_pred             CCCCcEEEccCCccccCCccc------------------------------------------------cCCCCCCCEEE
Q 044082          130 LTNLQSLNLGYNSLYVSKFGW------------------------------------------------LSHLNKLTQLD  161 (243)
Q Consensus       130 l~~L~~L~l~~n~l~~~~~~~------------------------------------------------l~~l~~L~~L~  161 (243)
                      ++.++++++++|.+.+.+|..                                                +..+.+++.++
T Consensus       148 l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~  227 (313)
T d1ogqa_         148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIH  227 (313)
T ss_dssp             CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEE
T ss_pred             Ccccceeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            666666666666544333332                                                23345566666


Q ss_pred             cCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCceeeCC
Q 044082          162 LDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLN  241 (243)
Q Consensus       162 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~  241 (243)
                      +.+|.+...+.   .+..+++|+.|++++|++++..|  ..+..+ ++|+.|+|++|+|+|.+|+ ++++++ |+.++++
T Consensus       228 ~~~~~l~~~~~---~~~~~~~L~~L~Ls~N~l~g~iP--~~l~~L-~~L~~L~Ls~N~l~g~iP~-~~~L~~-L~~l~l~  299 (313)
T d1ogqa_         228 LAKNSLAFDLG---KVGLSKNLNGLDLRNNRIYGTLP--QGLTQL-KFLHSLNVSFNNLCGEIPQ-GGNLQR-FDVSAYA  299 (313)
T ss_dssp             CCSSEECCBGG---GCCCCTTCCEEECCSSCCEECCC--GGGGGC-TTCCEEECCSSEEEEECCC-STTGGG-SCGGGTC
T ss_pred             ccccccccccc---ccccccccccccCccCeecccCC--hHHhCC-CCCCEEECcCCcccccCCC-cccCCC-CCHHHhC
Confidence            66666655532   57778999999999999998888  788888 9999999999999998886 578888 9999999


Q ss_pred             CC
Q 044082          242 SN  243 (243)
Q Consensus       242 ~N  243 (243)
                      +|
T Consensus       300 ~N  301 (313)
T d1ogqa_         300 NN  301 (313)
T ss_dssp             SS
T ss_pred             CC
Confidence            87

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=9.4e-21  Score=151.26  Aligned_cols=180  Identities=22%  Similarity=0.141  Sum_probs=150.2

Q ss_pred             CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCC------------------------CcchhhcC
Q 044082           50 GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGN------------------------PIPEFIGF  105 (243)
Q Consensus        50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~------------------------~~~~~~~~  105 (243)
                      ..++.|+|++        |.++...+..|.++++|++|++++|.+...                        ..+..+..
T Consensus        32 ~~~~~L~Ls~--------N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~  103 (284)
T d1ozna_          32 AASQRIFLHG--------NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG  103 (284)
T ss_dssp             TTCSEEECTT--------SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTT
T ss_pred             CCCCEEECcC--------CcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcc
Confidence            3578899999        577755556788899999999998866422                        02455778


Q ss_pred             CCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccc
Q 044082          106 FTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRD  185 (243)
Q Consensus       106 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~  185 (243)
                      +++|++|++++|.+....+..+..+..|+.+++++|.++...+..+..+.+|+.|++++|.+...+.  ..+..+++|+.
T Consensus       104 l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~--~~f~~l~~L~~  181 (284)
T d1ozna_         104 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE--RAFRGLHSLDR  181 (284)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT--TTTTTCTTCCE
T ss_pred             cccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccch--hhhccccccch
Confidence            8999999999999886666677788899999999999987777788889999999999999988843  37788999999


Q ss_pred             cccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082          186 LYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       186 L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N  243 (243)
                      +++++|+++++.+  ..+..+ ++|++|++++|.+++..+..++.+++ |++|++++|
T Consensus       182 l~l~~N~l~~i~~--~~f~~l-~~L~~L~l~~N~i~~~~~~~~~~~~~-L~~L~l~~N  235 (284)
T d1ozna_         182 LLLHQNRVAHVHP--HAFRDL-GRLMTLYLFANNLSALPTEALAPLRA-LQYLRLNDN  235 (284)
T ss_dssp             EECCSSCCCEECT--TTTTTC-TTCCEEECCSSCCSCCCHHHHTTCTT-CCEEECCSS
T ss_pred             hhhhhccccccCh--hHhhhh-hhcccccccccccccccccccccccc-cCEEEecCC
Confidence            9999999998877  667777 99999999999999877788889998 999999987

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=3.6e-19  Score=140.71  Aligned_cols=172  Identities=24%  Similarity=0.244  Sum_probs=143.6

Q ss_pred             ceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCC
Q 044082           51 HVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNL  130 (243)
Q Consensus        51 ~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l  130 (243)
                      ...++|-++        ++++ .+|+.+.  +++++|+|++|.++.. .+..|..+++|++|++++|.++ .++. ++.+
T Consensus        11 ~~~~v~C~~--------~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l-~~~~f~~l~~L~~L~L~~N~l~-~l~~-~~~l   76 (266)
T d1p9ag_          11 SHLEVNCDK--------RNLT-ALPPDLP--KDTTILHLSENLLYTF-SLATLMPYTRLTQLNLDRAELT-KLQV-DGTL   76 (266)
T ss_dssp             TCCEEECTT--------SCCS-SCCSCCC--TTCCEEECTTSCCSEE-EGGGGTTCTTCCEEECTTSCCC-EEEC-CSCC
T ss_pred             CCeEEEccC--------CCCC-eeCcCcC--cCCCEEECcCCcCCCc-CHHHhhcccccccccccccccc-cccc-cccc
Confidence            345568888        4666 4676554  5799999999999885 5577899999999999999998 4443 5689


Q ss_pred             CCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCC
Q 044082          131 TNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSL  210 (243)
Q Consensus       131 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L  210 (243)
                      ++|++|++++|+++.. +..+..+++|++|++++|.+...+.  ..+..+.++++|.+++|.+..+.+  ..+..+ +.+
T Consensus        77 ~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~l~~L~l~~n~l~~l~~--~~~~~l-~~l  150 (266)
T d1p9ag_          77 PVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPL--GALRGLGELQELYLKGNELKTLPP--GLLTPT-PKL  150 (266)
T ss_dssp             TTCCEEECCSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCS--STTTTCTTCCEEECTTSCCCCCCT--TTTTTC-TTC
T ss_pred             cccccccccccccccc-ccccccccccccccccccccceeec--cccccccccccccccccccceecc--cccccc-ccc
Confidence            9999999999999854 5668889999999999999988843  367888999999999999998876  455555 999


Q ss_pred             cEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082          211 ALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       211 ~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N  243 (243)
                      +.+++++|++++..+..+..+++ |++|++++|
T Consensus       151 ~~l~l~~N~l~~~~~~~~~~l~~-L~~L~Ls~N  182 (266)
T d1p9ag_         151 EKLSLANNNLTELPAGLLNGLEN-LDTLLLQEN  182 (266)
T ss_dssp             CEEECTTSCCSCCCTTTTTTCTT-CCEEECCSS
T ss_pred             hhcccccccccccCccccccccc-cceeecccC
Confidence            99999999999777777888999 999999987

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.78  E-value=1.5e-18  Score=139.54  Aligned_cols=74  Identities=24%  Similarity=0.288  Sum_probs=55.3

Q ss_pred             cccceEEecCC---------CCceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCC
Q 044082           38 CKWSGVQCSNR---------TGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTK  108 (243)
Q Consensus        38 ~~~~~~~c~~~---------~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  108 (243)
                      |.|..+.|...         ...++.|+|++        |.++...+..|.++++|++|++++|.+... .|..|..+++
T Consensus        10 c~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~--------N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i-~~~~f~~l~~   80 (305)
T d1xkua_          10 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQN--------NKITEIKDGDFKNLKNLHTLILINNKISKI-SPGAFAPLVK   80 (305)
T ss_dssp             EETTEEECTTSCCCSCCCSCCTTCCEEECCS--------SCCCCBCTTTTTTCTTCCEEECCSSCCCCB-CTTTTTTCTT
T ss_pred             ecCCEEEecCCCCCccCCCCCCCCCEEECcC--------CcCCCcChhHhhcccccccccccccccccc-chhhhhCCCc
Confidence            67888888642         25689999999        466654445677888888888888888775 5677778888


Q ss_pred             CcEEecCCcccc
Q 044082          109 LRFLDLSLANFS  120 (243)
Q Consensus       109 L~~L~l~~~~~~  120 (243)
                      |++|++++|.++
T Consensus        81 L~~L~l~~n~l~   92 (305)
T d1xkua_          81 LERLYLSKNQLK   92 (305)
T ss_dssp             CCEEECCSSCCS
T ss_pred             cCEecccCCccC
Confidence            888888777655

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=1.4e-17  Score=125.82  Aligned_cols=160  Identities=28%  Similarity=0.342  Sum_probs=132.0

Q ss_pred             CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCC
Q 044082           50 GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN  129 (243)
Q Consensus        50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~  129 (243)
                      .+++.|+++++        ++.. + +.+..+++|++|++++|.++.  +++ +..+++|++|++++|.+. .++ .+..
T Consensus        40 ~~l~~L~l~~~--------~i~~-l-~~l~~l~nL~~L~Ls~N~l~~--~~~-l~~l~~L~~L~l~~n~~~-~~~-~l~~  104 (199)
T d2omxa2          40 DQVTTLQADRL--------GIKS-I-DGVEYLNNLTQINFSNNQLTD--ITP-LKNLTKLVDILMNNNQIA-DIT-PLAN  104 (199)
T ss_dssp             TTCCEEECTTS--------CCCC-C-TTGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCC-CCG-GGTT
T ss_pred             cCCCEEECCCC--------CCCC-c-cccccCCCcCcCccccccccC--ccc-ccCCcccccccccccccc-ccc-cccc
Confidence            47889999995        5553 3 347889999999999999987  443 889999999999999887 444 3788


Q ss_pred             CCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCC
Q 044082          130 LTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTS  209 (243)
Q Consensus       130 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~  209 (243)
                      ++.|++|+++++.....  ..+..+++|+.|++++|.+...+    .+..+++|+.|++.+|++++..    .+..+ ++
T Consensus       105 l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~~----~l~~~~~L~~L~l~~n~l~~l~----~l~~l-~~  173 (199)
T d2omxa2         105 LTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDIS----ALSGLTSLQQLNFSSNQVTDLK----PLANL-TT  173 (199)
T ss_dssp             CTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCCG----GGTTCTTCSEEECCSSCCCCCG----GGTTC-TT
T ss_pred             ccccccccccccccccc--cccchhhhhHHhhhhhhhhcccc----cccccccccccccccccccCCc----cccCC-CC
Confidence            99999999999988754  34788999999999999997764    5678899999999999998753    46666 99


Q ss_pred             CcEEECCCCccccccchhHHhhhccCcee
Q 044082          210 LALLDLSSCGLSNSAYHWLFKISSNLLAL  238 (243)
Q Consensus       210 L~~L~L~~n~i~~~~~~~l~~l~~~L~~L  238 (243)
                      |+.|++++|++++ ++ .+..+++ |++|
T Consensus       174 L~~L~ls~N~i~~-i~-~l~~L~~-L~~L  199 (199)
T d2omxa2         174 LERLDISSNKVSD-IS-VLAKLTN-LESL  199 (199)
T ss_dssp             CCEEECCSSCCCC-CG-GGGGCTT-CSEE
T ss_pred             CCEEECCCCCCCC-Cc-cccCCCC-CCcC
Confidence            9999999999985 54 4778887 8765

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=9.6e-18  Score=127.82  Aligned_cols=163  Identities=23%  Similarity=0.251  Sum_probs=135.4

Q ss_pred             ceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCC
Q 044082           51 HVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNL  130 (243)
Q Consensus        51 ~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l  130 (243)
                      .++.|+++++        .+.. ++ .+..+++|++|++++|.++.  ++ .++.+++|++|++++|.++ .++ .+..+
T Consensus        47 ~L~~L~l~~~--------~i~~-l~-~l~~l~~L~~L~L~~n~i~~--l~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l  111 (210)
T d1h6ta2          47 SIDQIIANNS--------DIKS-VQ-GIQYLPNVTKLFLNGNKLTD--IK-PLANLKNLGWLFLDENKVK-DLS-SLKDL  111 (210)
T ss_dssp             TCCEEECTTS--------CCCC-CT-TGGGCTTCCEEECCSSCCCC--CG-GGTTCTTCCEEECCSSCCC-CGG-GGTTC
T ss_pred             CccEEECcCC--------CCCC-ch-hHhhCCCCCEEeCCCccccC--cc-ccccCcccccccccccccc-ccc-ccccc
Confidence            5788999994        6554 22 47889999999999999987  44 3688999999999999998 444 47889


Q ss_pred             CCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCC
Q 044082          131 TNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSL  210 (243)
Q Consensus       131 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L  210 (243)
                      ++|+.|++++|.+...  ..+..++.++.+++++|.+.+.+    .+..+++|+++++++|.++++.    .+..+ ++|
T Consensus       112 ~~L~~L~l~~~~~~~~--~~l~~l~~l~~l~~~~n~l~~~~----~~~~l~~L~~l~l~~n~l~~i~----~l~~l-~~L  180 (210)
T d1h6ta2         112 KKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDIT----VLSRLTKLDTLSLEDNQISDIV----PLAGL-TKL  180 (210)
T ss_dssp             TTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCCG----GGGGCTTCSEEECCSSCCCCCG----GGTTC-TTC
T ss_pred             cccccccccccccccc--ccccccccccccccccccccccc----cccccccccccccccccccccc----cccCC-CCC
Confidence            9999999999988643  35788999999999999998764    4567899999999999998653    45666 999


Q ss_pred             cEEECCCCccccccchhHHhhhccCceeeCCC
Q 044082          211 ALLDLSSCGLSNSAYHWLFKISSNLLALDLNS  242 (243)
Q Consensus       211 ~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~  242 (243)
                      +.|++++|+|+ .++ .+.++++ |++|++++
T Consensus       181 ~~L~Ls~N~i~-~l~-~l~~l~~-L~~L~Ls~  209 (210)
T d1h6ta2         181 QNLYLSKNHIS-DLR-ALAGLKN-LDVLELFS  209 (210)
T ss_dssp             CEEECCSSCCC-BCG-GGTTCTT-CSEEEEEE
T ss_pred             CEEECCCCCCC-CCh-hhcCCCC-CCEEEccC
Confidence            99999999998 465 5888998 99999864

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=2.8e-17  Score=130.75  Aligned_cols=168  Identities=20%  Similarity=0.162  Sum_probs=141.4

Q ss_pred             CceEEEecCCCCC-----------------CCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEE
Q 044082           50 GHVIMLNLKYKVD-----------------PVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFL  112 (243)
Q Consensus        50 ~~l~~L~l~~~~~-----------------~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  112 (243)
                      ..++.++++++.+                 .....+.+....+..++++++|++|++++|.+... .+..+..+++|+.+
T Consensus        56 ~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~l  134 (284)
T d1ozna_          56 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL-GPGLFRGLAALQYL  134 (284)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEecCCcccccc-cccccchhcccchh
Confidence            5688888888766                 11223344444577899999999999999999875 66678889999999


Q ss_pred             ecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhcccccccccccccc
Q 044082          113 DLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASST  192 (243)
Q Consensus       113 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~  192 (243)
                      ++++|.+++..+..+..+++|++|++++|.++...+..+..+++|+.+++.+|.+.+..  +..+..+++|++|++++|.
T Consensus       135 ~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~--~~~f~~l~~L~~L~l~~N~  212 (284)
T d1ozna_         135 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH--PHAFRDLGRLMTLYLFANN  212 (284)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSSC
T ss_pred             hhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccC--hhHhhhhhhcccccccccc
Confidence            99999999666677888999999999999999888888999999999999999999883  2378999999999999999


Q ss_pred             CCCCCCCCcccccCCCCCcEEECCCCccccc
Q 044082          193 LPSINRPSLSSMNSSTSLALLDLSSCGLSNS  223 (243)
Q Consensus       193 ~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~  223 (243)
                      +.+..+  ..+... ++|+.|++++|.+...
T Consensus       213 i~~~~~--~~~~~~-~~L~~L~l~~N~l~C~  240 (284)
T d1ozna_         213 LSALPT--EALAPL-RALQYLRLNDNPWVCD  240 (284)
T ss_dssp             CSCCCH--HHHTTC-TTCCEEECCSSCEECS
T ss_pred             cccccc--cccccc-cccCEEEecCCCCCCC
Confidence            998877  667777 9999999999998754

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.72  E-value=1.6e-17  Score=124.75  Aligned_cols=111  Identities=25%  Similarity=0.213  Sum_probs=62.2

Q ss_pred             ceEEEecCCCCCCCCCCCCccccc-chhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCC
Q 044082           51 HVIMLNLKYKVDPVCPNRPLRGNI-NSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN  129 (243)
Q Consensus        51 ~l~~L~l~~~~~~~~~~~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~  129 (243)
                      .++.|+|++        |.|++.+ +..|.++++|+.|++++|.+... .+..+..+++|++|++++|.+....+..|.+
T Consensus        30 ~l~~L~Ls~--------N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~-~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~  100 (192)
T d1w8aa_          30 HTTELLLND--------NELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLGENKIKEISNKMFLG  100 (192)
T ss_dssp             TCSEEECCS--------CCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSCCCCEECSSSSTT
T ss_pred             CCCEEEeCC--------CCCcccccccccCCCceEeeeeccccccccc-cccccccccccceeeeccccccccCHHHHhC
Confidence            455555555        3554433 33445556666666666665554 4555555566666666666655444444555


Q ss_pred             CCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCC
Q 044082          130 LTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEA  170 (243)
Q Consensus       130 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~  170 (243)
                      +++|++|++++|+++...+..|..+++|+++++++|.+...
T Consensus       101 l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~  141 (192)
T d1w8aa_         101 LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             CCcccccccCCccccccCHHHhcCCcccccccccccccccc
Confidence            66666666666666555555555556666666666655544

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.71  E-value=7.4e-18  Score=126.68  Aligned_cols=160  Identities=21%  Similarity=0.145  Sum_probs=127.2

Q ss_pred             EEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCC
Q 044082           54 MLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNL  133 (243)
Q Consensus        54 ~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L  133 (243)
                      .++.++        ++++ .+|..+.  +++++|+|++|.++....+..|..+++|++|++++|.+....+..+..+++|
T Consensus        12 ~v~Cs~--------~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L   80 (192)
T d1w8aa_          12 TVDCTG--------RGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI   80 (192)
T ss_dssp             EEECTT--------SCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred             EEEEeC--------CCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccccccccc
Confidence            567777        4666 4666553  6899999999999864256778899999999999999997778889999999


Q ss_pred             cEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEE
Q 044082          134 QSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALL  213 (243)
Q Consensus       134 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L  213 (243)
                      ++|++++|+++...+..|.++++|++|++++|.++.++.  ..+..+++|+++++++|.+...... .++.   ..++.+
T Consensus        81 ~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~--~~f~~l~~L~~l~L~~N~~~~~~~~-~~~~---~~l~~~  154 (192)
T d1w8aa_          81 QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP--GSFEHLNSLTSLNLASNPFNCNCHL-AWFA---EWLRKK  154 (192)
T ss_dssp             CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECT--TSSTTCTTCCEEECTTCCBCCSGGG-HHHH---HHHHHH
T ss_pred             ceeeeccccccccCHHHHhCCCcccccccCCccccccCH--HHhcCCcccccccccccccccccch-HHHh---hhhhhh
Confidence            999999999998888889999999999999999999843  3788899999999999998765431 1111   335566


Q ss_pred             ECCCCccccccchhHHh
Q 044082          214 DLSSCGLSNSAYHWLFK  230 (243)
Q Consensus       214 ~L~~n~i~~~~~~~l~~  230 (243)
                      .+..+.++...|..+.+
T Consensus       155 ~l~~~~~~c~~p~~l~~  171 (192)
T d1w8aa_         155 SLNGGAARCGAPSKVRD  171 (192)
T ss_dssp             CCSGGGCBBCSSTTTTT
T ss_pred             cccCCCeEeCCChhhcC
Confidence            67777777666655443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=1.9e-16  Score=130.53  Aligned_cols=165  Identities=29%  Similarity=0.344  Sum_probs=123.3

Q ss_pred             CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCC
Q 044082           50 GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN  129 (243)
Q Consensus        50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~  129 (243)
                      ..++.+++++        |.++. + +.+..+++|+.+++++|.+++.  + .+..+++|++|+++++.+.+. + .+..
T Consensus       219 ~~L~~L~l~~--------n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~--~-~~~~~~~L~~L~l~~~~l~~~-~-~~~~  283 (384)
T d2omza2         219 TNLDELSLNG--------NQLKD-I-GTLASLTNLTDLDLANNQISNL--A-PLSGLTKLTELKLGANQISNI-S-PLAG  283 (384)
T ss_dssp             TTCCEEECCS--------SCCCC-C-GGGGGCTTCSEEECCSSCCCCC--G-GGTTCTTCSEEECCSSCCCCC-G-GGTT
T ss_pred             CCCCEEECCC--------CCCCC-c-chhhcccccchhccccCccCCC--C-cccccccCCEeeccCcccCCC-C-cccc
Confidence            4556666666        34443 2 3466777777777777777663  3 266777788888877777632 2 2556


Q ss_pred             CCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCC
Q 044082          130 LTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTS  209 (243)
Q Consensus       130 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~  209 (243)
                      ++.++.+.+..|.+++.  ..+..+.+++.|++++|.+.+.+    .+..+++|++|++++|+++.+    ..+..+ ++
T Consensus       284 ~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~----~l~~l~~L~~L~L~~n~l~~l----~~l~~l-~~  352 (384)
T d2omza2         284 LTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS----PVSSLTKLQRLFFANNKVSDV----SSLANL-TN  352 (384)
T ss_dssp             CTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCG----GGGGCTTCCEEECCSSCCCCC----GGGGGC-TT
T ss_pred             ccccccccccccccccc--cccchhcccCeEECCCCCCCCCc----ccccCCCCCEEECCCCCCCCC----hhHcCC-CC
Confidence            77777788877777642  34677889999999999998874    367889999999999999864    356677 99


Q ss_pred             CcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082          210 LALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       210 L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N  243 (243)
                      |+.|++++|++++..|  +.++++ |+.|++++|
T Consensus       353 L~~L~l~~N~l~~l~~--l~~l~~-L~~L~L~~N  383 (384)
T d2omza2         353 INWLSAGHNQISDLTP--LANLTR-ITQLGLNDQ  383 (384)
T ss_dssp             CCEEECCSSCCCBCGG--GTTCTT-CSEEECCCE
T ss_pred             CCEEECCCCcCCCChh--hccCCC-CCEeeCCCC
Confidence            9999999999996443  888998 999999987

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=2.8e-16  Score=118.59  Aligned_cols=155  Identities=23%  Similarity=0.283  Sum_probs=127.3

Q ss_pred             CCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCC
Q 044082           68 RPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSK  147 (243)
Q Consensus        68 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~  147 (243)
                      +.+++.+.  ...++++++|+++++.++.  + +.+..+++|++|++++|.+++. +. ++.+++|++|++++|.+....
T Consensus        28 ~~~~~~~~--~~~l~~l~~L~l~~~~i~~--l-~~l~~l~nL~~L~Ls~N~l~~~-~~-l~~l~~L~~L~l~~n~~~~~~  100 (199)
T d2omxa2          28 TNVTDTVS--QTDLDQVTTLQADRLGIKS--I-DGVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADIT  100 (199)
T ss_dssp             SSTTSEEC--HHHHTTCCEEECTTSCCCC--C-TTGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCG
T ss_pred             CCCCCccC--HHHhcCCCEEECCCCCCCC--c-cccccCCCcCcCccccccccCc-cc-ccCCccccccccccccccccc
Confidence            35555433  3567899999999999986  3 3578899999999999999854 33 889999999999999887542


Q ss_pred             ccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchh
Q 044082          148 FGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHW  227 (243)
Q Consensus       148 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~  227 (243)
                        .+..++.|+.|++++|.+...+    .+..+++|+.|++++|.+...    ..+... ++|+.|++.+|.+++ ++ .
T Consensus       101 --~l~~l~~L~~L~l~~~~~~~~~----~~~~l~~L~~L~l~~n~l~~~----~~l~~~-~~L~~L~l~~n~l~~-l~-~  167 (199)
T d2omxa2         101 --PLANLTNLTGLTLFNNQITDID----PLKNLTNLNRLELSSNTISDI----SALSGL-TSLQQLNFSSNQVTD-LK-P  167 (199)
T ss_dssp             --GGTTCTTCSEEECCSSCCCCCG----GGTTCTTCSEEECCSSCCCCC----GGGTTC-TTCSEEECCSSCCCC-CG-G
T ss_pred             --cccccccccccccccccccccc----ccchhhhhHHhhhhhhhhccc----cccccc-ccccccccccccccC-Cc-c
Confidence              3889999999999999888764    467889999999999998754    345666 999999999999985 43 3


Q ss_pred             HHhhhccCceeeCCCC
Q 044082          228 LFKISSNLLALDLNSN  243 (243)
Q Consensus       228 l~~l~~~L~~L~l~~N  243 (243)
                      ++++++ |++|++++|
T Consensus       168 l~~l~~-L~~L~ls~N  182 (199)
T d2omxa2         168 LANLTT-LERLDISSN  182 (199)
T ss_dssp             GTTCTT-CCEEECCSS
T ss_pred             ccCCCC-CCEEECCCC
Confidence            888998 999999987

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.67  E-value=5.5e-16  Score=124.32  Aligned_cols=176  Identities=22%  Similarity=0.239  Sum_probs=110.2

Q ss_pred             CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCC-------------------------------
Q 044082           50 GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNP-------------------------------   98 (243)
Q Consensus        50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-------------------------------   98 (243)
                      .+++.|++++        +.+....|..|.++++|++|++++|.++..+                               
T Consensus        55 ~~L~~L~l~~--------n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~  126 (305)
T d1xkua_          55 KNLHTLILIN--------NKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQM  126 (305)
T ss_dssp             TTCCEEECCS--------SCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTC
T ss_pred             cccccccccc--------ccccccchhhhhCCCccCEecccCCccCcCccchhhhhhhhhccccchhhhhhhhhhccccc
Confidence            4677777777        3666555666777777777777776654320                               


Q ss_pred             ---------------cchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcC
Q 044082           99 ---------------IPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLD  163 (243)
Q Consensus        99 ---------------~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  163 (243)
                                     .+..+..+++|+++++++|.+. .+|..+  +++|++|++++|..+...+..+..++.++.|+++
T Consensus       127 ~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s  203 (305)
T d1xkua_         127 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLS  203 (305)
T ss_dssp             CEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECC
T ss_pred             cccccccccccccCCCccccccccccCccccccCCcc-ccCccc--CCccCEEECCCCcCCCCChhHhhccccccccccc
Confidence                           1112334556666666666655 334332  4567777777777666666667777777777777


Q ss_pred             CccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccch------hHHhhhccCce
Q 044082          164 FVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYH------WLFKISSNLLA  237 (243)
Q Consensus       164 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~------~l~~l~~~L~~  237 (243)
                      +|.+.+.+.  ..+..+++|++|++++|+++.++   ..+..+ ++|+.|++++|+|+.....      ......+ |+.
T Consensus       204 ~n~l~~~~~--~~~~~l~~L~~L~L~~N~L~~lp---~~l~~l-~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~-L~~  276 (305)
T d1xkua_         204 FNSISAVDN--GSLANTPHLRELHLNNNKLVKVP---GGLADH-KYIQVVYLHNNNISAIGSNDFCPPGYNTKKAS-YSG  276 (305)
T ss_dssp             SSCCCEECT--TTGGGSTTCCEEECCSSCCSSCC---TTTTTC-SSCCEEECCSSCCCCCCTTSSSCSSCCTTSCC-CSE
T ss_pred             ccccccccc--ccccccccceeeecccccccccc---cccccc-cCCCEEECCCCccCccChhhccCcchhcccCC-CCE
Confidence            777776632  25667777777777777777653   355555 7777777777777632111      1223444 777


Q ss_pred             eeCCCC
Q 044082          238 LDLNSN  243 (243)
Q Consensus       238 L~l~~N  243 (243)
                      |++++|
T Consensus       277 L~L~~N  282 (305)
T d1xkua_         277 VSLFSN  282 (305)
T ss_dssp             EECCSS
T ss_pred             EECCCC
Confidence            777765

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=2.2e-15  Score=115.74  Aligned_cols=165  Identities=19%  Similarity=0.226  Sum_probs=106.1

Q ss_pred             ceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCC
Q 044082           51 HVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNL  130 (243)
Q Consensus        51 ~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l  130 (243)
                      .++.|++.++        +++. + +.+.++++|++|++++|.++..  + .+..+++++++++++|.++ .++ .+..+
T Consensus        42 ~L~~L~l~~~--------~i~~-l-~~l~~l~~L~~L~ls~n~i~~~--~-~l~~l~~l~~l~~~~n~~~-~i~-~l~~l  106 (227)
T d1h6ua2          42 GITTLSAFGT--------GVTT-I-EGVQYLNNLIGLELKDNQITDL--A-PLKNLTKITELELSGNPLK-NVS-AIAGL  106 (227)
T ss_dssp             TCCEEECTTS--------CCCC-C-TTGGGCTTCCEEECCSSCCCCC--G-GGTTCCSCCEEECCSCCCS-CCG-GGTTC
T ss_pred             CcCEEECCCC--------CCCc-c-hhHhcCCCCcEeecCCceeecc--c-ccccccccccccccccccc-ccc-ccccc
Confidence            4556666663        4442 2 2355566666666666665542  2 2555566666666655554 222 24455


Q ss_pred             CCCcEEEccCCccccC--------------------CccccCCCCCCCEEEcCCccccCCcchHHHhhcccccccccccc
Q 044082          131 TNLQSLNLGYNSLYVS--------------------KFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLAS  190 (243)
Q Consensus       131 ~~L~~L~l~~n~l~~~--------------------~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~  190 (243)
                      +.|+++.++.+.....                    ....+..+++|++|++++|.+.+.+    .+..+++|++|++++
T Consensus       107 ~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~----~l~~l~~L~~L~Ls~  182 (227)
T d1h6ua2         107 QSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT----PLANLSKLTTLKADD  182 (227)
T ss_dssp             TTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG----GGTTCTTCCEEECCS
T ss_pred             ccccccccccccccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccch----hhcccccceecccCC
Confidence            5555555555442211                    1122556778999999999887764    467889999999999


Q ss_pred             ccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCceeeCCC
Q 044082          191 STLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLNS  242 (243)
Q Consensus       191 n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~  242 (243)
                      |+++++.    .+..+ ++|++|++++|++++ ++. +++++. |+.|++++
T Consensus       183 n~l~~l~----~l~~l-~~L~~L~Ls~N~lt~-i~~-l~~l~~-L~~L~lsn  226 (227)
T d1h6ua2         183 NKISDIS----PLASL-PNLIEVHLKNNQISD-VSP-LANTSN-LFIVTLTN  226 (227)
T ss_dssp             SCCCCCG----GGGGC-TTCCEEECTTSCCCB-CGG-GTTCTT-CCEEEEEE
T ss_pred             CccCCCh----hhcCC-CCCCEEECcCCcCCC-Ccc-cccCCC-CCEEEeeC
Confidence            9988652    45666 999999999999985 543 788888 99998863

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=1.3e-15  Score=117.10  Aligned_cols=144  Identities=26%  Similarity=0.329  Sum_probs=111.2

Q ss_pred             CCceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCcccccc------
Q 044082           49 TGHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGR------  122 (243)
Q Consensus        49 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~------  122 (243)
                      .++++.|++++|        .+.+..+  +.++++++++++++|.++.  ++ .+..+++|++++++.+...+.      
T Consensus        62 l~~L~~L~ls~n--------~i~~~~~--l~~l~~l~~l~~~~n~~~~--i~-~l~~l~~L~~l~l~~~~~~~~~~~~~~  128 (227)
T d1h6ua2          62 LNNLIGLELKDN--------QITDLAP--LKNLTKITELELSGNPLKN--VS-AIAGLQSIKTLDLTSTQITDVTPLAGL  128 (227)
T ss_dssp             CTTCCEEECCSS--------CCCCCGG--GTTCCSCCEEECCSCCCSC--CG-GGTTCTTCCEEECTTSCCCCCGGGTTC
T ss_pred             CCCCcEeecCCc--------eeecccc--ccccccccccccccccccc--cc-cccccccccccccccccccccchhccc
Confidence            468999999994        6665333  7888888888888888765  33 467788888888887754421      


Q ss_pred             --------------CCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhcccccccccc
Q 044082          123 --------------IPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYL  188 (243)
Q Consensus       123 --------------~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l  188 (243)
                                    ....+..+++|++|++++|.+....  .++.+++|+.|++++|.+++.+    .+..+++|++|++
T Consensus       129 ~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~l~----~l~~l~~L~~L~L  202 (227)
T d1h6ua2         129 SNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISDIS----PLASLPNLIEVHL  202 (227)
T ss_dssp             TTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG----GGGGCTTCCEEEC
T ss_pred             cchhhhhchhhhhchhhhhccccccccccccccccccch--hhcccccceecccCCCccCCCh----hhcCCCCCCEEEC
Confidence                          1123456788999999999887543  3788999999999999998875    4678899999999


Q ss_pred             ccccCCCCCCCCcccccCCCCCcEEECC
Q 044082          189 ASSTLPSINRPSLSSMNSSTSLALLDLS  216 (243)
Q Consensus       189 ~~n~~~~~~~~~~~~~~~~~~L~~L~L~  216 (243)
                      ++|+++++.    .+..+ ++|+.|+++
T Consensus       203 s~N~lt~i~----~l~~l-~~L~~L~ls  225 (227)
T d1h6ua2         203 KNNQISDVS----PLANT-SNLFIVTLT  225 (227)
T ss_dssp             TTSCCCBCG----GGTTC-TTCCEEEEE
T ss_pred             cCCcCCCCc----ccccC-CCCCEEEee
Confidence            999998763    35566 999999986

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=1.2e-15  Score=116.09  Aligned_cols=155  Identities=25%  Similarity=0.283  Sum_probs=126.8

Q ss_pred             CCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCC
Q 044082           68 RPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSK  147 (243)
Q Consensus        68 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~  147 (243)
                      +.+.+.++.  ..+..|++|++++|.++..  + .+..+++|++|++++|.+++ ++ .++.+++|++|++++|+++.. 
T Consensus        34 ~~~~~~~~~--~~L~~L~~L~l~~~~i~~l--~-~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~~l-  105 (210)
T d1h6ta2          34 KSVTDAVTQ--NELNSIDQIIANNSDIKSV--Q-GIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVKDL-  105 (210)
T ss_dssp             SCTTSEECH--HHHHTCCEEECTTSCCCCC--T-TGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCCG-
T ss_pred             CccCCccCH--HHhcCccEEECcCCCCCCc--h-hHhhCCCCCEEeCCCccccC-cc-ccccCcccccccccccccccc-
Confidence            355554442  4577899999999999873  3 47889999999999999985 44 367899999999999999853 


Q ss_pred             ccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchh
Q 044082          148 FGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHW  227 (243)
Q Consensus       148 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~  227 (243)
                      + .+..+++|+.|++.+|.+...+    .+..++.++.+++++|.++..    .....+ ++|+.+++++|++++ ++. 
T Consensus       106 ~-~l~~l~~L~~L~l~~~~~~~~~----~l~~l~~l~~l~~~~n~l~~~----~~~~~l-~~L~~l~l~~n~l~~-i~~-  173 (210)
T d1h6ta2         106 S-SLKDLKKLKSLSLEHNGISDIN----GLVHLPQLESLYLGNNKITDI----TVLSRL-TKLDTLSLEDNQISD-IVP-  173 (210)
T ss_dssp             G-GGTTCTTCCEEECTTSCCCCCG----GGGGCTTCCEEECCSSCCCCC----GGGGGC-TTCSEEECCSSCCCC-CGG-
T ss_pred             c-cccccccccccccccccccccc----ccccccccccccccccccccc----cccccc-ccccccccccccccc-ccc-
Confidence            3 4888999999999999987764    567888999999999998764    345556 999999999999985 443 


Q ss_pred             HHhhhccCceeeCCCC
Q 044082          228 LFKISSNLLALDLNSN  243 (243)
Q Consensus       228 l~~l~~~L~~L~l~~N  243 (243)
                      +.++++ |++|++++|
T Consensus       174 l~~l~~-L~~L~Ls~N  188 (210)
T d1h6ta2         174 LAGLTK-LQNLYLSKN  188 (210)
T ss_dssp             GTTCTT-CCEEECCSS
T ss_pred             ccCCCC-CCEEECCCC
Confidence            888998 999999987

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=5.8e-16  Score=107.84  Aligned_cols=88  Identities=28%  Similarity=0.279  Sum_probs=40.0

Q ss_pred             hccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCC-ccccCCCCC
Q 044082           78 LLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSK-FGWLSHLNK  156 (243)
Q Consensus        78 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~  156 (243)
                      +.++++|++|++++|.++.  +|+.++.+++|++|++++|.++ .+| .++.+++|++|++++|+++... ...+..+++
T Consensus        16 l~~l~~L~~L~ls~N~l~~--lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~   91 (124)
T d1dcea3          16 LEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPR   91 (124)
T ss_dssp             GGGGTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTT
T ss_pred             cccCCCCCEEECCCCccCc--chhhhhhhhccccccccccccc-ccC-ccccccccCeEECCCCccCCCCCchhhcCCCC
Confidence            4444555555555555443  3444444555555555555444 222 2444444444444444444321 123344444


Q ss_pred             CCEEEcCCccccC
Q 044082          157 LTQLDLDFVDLSE  169 (243)
Q Consensus       157 L~~L~l~~n~l~~  169 (243)
                      |++|++++|.+..
T Consensus        92 L~~L~l~~N~i~~  104 (124)
T d1dcea3          92 LVLLNLQGNSLCQ  104 (124)
T ss_dssp             CCEEECTTSGGGG
T ss_pred             CCEEECCCCcCCc
Confidence            4444444444443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.4e-16  Score=116.19  Aligned_cols=131  Identities=21%  Similarity=0.181  Sum_probs=86.5

Q ss_pred             hccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCC
Q 044082           78 LLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKL  157 (243)
Q Consensus        78 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  157 (243)
                      +.+...++.|++++|.++.  ++..+..+++|++|++++|.+. .++ .+..+++|++|++++|.++...+..+..+++|
T Consensus        14 ~~n~~~lr~L~L~~n~I~~--i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   89 (162)
T ss_dssp             EECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             ccCcCcCcEEECCCCCCCc--cCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCcccccccccc
Confidence            4566677788888888776  5555667777888888888777 333 46677778888888887776544445567777


Q ss_pred             CEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCC-cccccCCCCCcEEE
Q 044082          158 TQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPS-LSSMNSSTSLALLD  214 (243)
Q Consensus       158 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~~~~~~L~~L~  214 (243)
                      +.|++++|.+.+.++ ...+..+++|+++++++|.++...... ..+..+ ++|+.||
T Consensus        90 ~~L~L~~N~i~~~~~-l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~l-p~L~~LD  145 (162)
T d1a9na_          90 TELILTNNSLVELGD-LDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKV-PQVRVLD  145 (162)
T ss_dssp             CEEECCSCCCCCGGG-GGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHC-TTCSEET
T ss_pred             ccceecccccccccc-ccccccccccchhhcCCCccccccchHHHHHHHC-CCcCeeC
Confidence            777777777776643 235666777777777777765543210 123334 6777665

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.60  E-value=1.5e-14  Score=118.98  Aligned_cols=165  Identities=26%  Similarity=0.245  Sum_probs=134.5

Q ss_pred             CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCC
Q 044082           50 GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGN  129 (243)
Q Consensus        50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~  129 (243)
                      ..+..+++++        +.+++..|  ....++|+.|++++|.++.  + +.+..+++|+.+++++|.+.+..  .++.
T Consensus       197 ~~~~~l~l~~--------n~i~~~~~--~~~~~~L~~L~l~~n~l~~--~-~~l~~l~~L~~L~l~~n~l~~~~--~~~~  261 (384)
T d2omza2         197 TNLESLIATN--------NQISDITP--LGILTNLDELSLNGNQLKD--I-GTLASLTNLTDLDLANNQISNLA--PLSG  261 (384)
T ss_dssp             TTCSEEECCS--------SCCCCCGG--GGGCTTCCEEECCSSCCCC--C-GGGGGCTTCSEEECCSSCCCCCG--GGTT
T ss_pred             cccceeeccC--------CccCCCCc--ccccCCCCEEECCCCCCCC--c-chhhcccccchhccccCccCCCC--cccc
Confidence            4567778887        46665443  5677899999999999876  3 35788999999999999988433  3678


Q ss_pred             CCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCC
Q 044082          130 LTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTS  209 (243)
Q Consensus       130 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~  209 (243)
                      +++|++|+++++.+++..  .+..+..++.+.+..|.+.+.+    .+..++++++|++++|++++..    .+..+ ++
T Consensus       262 ~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~~----~~~~~~~l~~L~ls~n~l~~l~----~l~~l-~~  330 (384)
T d2omza2         262 LTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDIS----PISNLKNLTYLTLYFNNISDIS----PVSSL-TK  330 (384)
T ss_dssp             CTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCCG----GGGGCTTCSEEECCSSCCSCCG----GGGGC-TT
T ss_pred             cccCCEeeccCcccCCCC--cccccccccccccccccccccc----ccchhcccCeEECCCCCCCCCc----ccccC-CC
Confidence            899999999999987543  3778889999999999998764    4678889999999999998763    35566 99


Q ss_pred             CcEEECCCCccccccchhHHhhhccCceeeCCCC
Q 044082          210 LALLDLSSCGLSNSAYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       210 L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~~N  243 (243)
                      |+.|++++|+|++ ++ .+.++++ |++|++++|
T Consensus       331 L~~L~L~~n~l~~-l~-~l~~l~~-L~~L~l~~N  361 (384)
T d2omza2         331 LQRLFFANNKVSD-VS-SLANLTN-INWLSAGHN  361 (384)
T ss_dssp             CCEEECCSSCCCC-CG-GGGGCTT-CCEEECCSS
T ss_pred             CCEEECCCCCCCC-Ch-hHcCCCC-CCEEECCCC
Confidence            9999999999984 54 5899998 999999987

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=3e-15  Score=109.08  Aligned_cols=130  Identities=17%  Similarity=0.177  Sum_probs=106.1

Q ss_pred             hcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhcccc
Q 044082          103 IGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLAS  182 (243)
Q Consensus       103 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~  182 (243)
                      +.++.++++|++++|.++ .++..+..+++|++|++++|.++..  +.+..+++|++|++++|.+...+.  ..+..+++
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~--~~~~~l~~   88 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGE--GLDQALPD   88 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECS--CHHHHCTT
T ss_pred             ccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCc--cccccccc
Confidence            457778999999999999 5666667889999999999999854  348889999999999999998853  25677899


Q ss_pred             ccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccc----hhHHhhhccCceeeCC
Q 044082          183 LRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAY----HWLFKISSNLLALDLN  241 (243)
Q Consensus       183 L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~----~~l~~l~~~L~~L~l~  241 (243)
                      |++|++++|.+...... ..+..+ ++|+++++++|.++. .|    ..+..+++ |+.||..
T Consensus        89 L~~L~L~~N~i~~~~~l-~~l~~l-~~L~~L~l~~N~i~~-~~~~r~~~i~~lp~-L~~LD~~  147 (162)
T d1a9na_          89 LTELILTNNSLVELGDL-DPLASL-KSLTYLCILRNPVTN-KKHYRLYVIYKVPQ-VRVLDFQ  147 (162)
T ss_dssp             CCEEECCSCCCCCGGGG-GGGGGC-TTCCEEECCSSGGGG-STTHHHHHHHHCTT-CSEETTE
T ss_pred             cccceeccccccccccc-cccccc-cccchhhcCCCcccc-ccchHHHHHHHCCC-cCeeCCC
Confidence            99999999999875331 245556 999999999999984 43    35788898 9999853

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.57  E-value=1.3e-14  Score=100.87  Aligned_cols=122  Identities=21%  Similarity=0.174  Sum_probs=101.3

Q ss_pred             cEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCC
Q 044082           85 NYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDF  164 (243)
Q Consensus        85 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~  164 (243)
                      |+|++++|.++.  ++ .+..+++|++|++++|.++ .+|..++.+++|++|++++|.++.. + .+..+++|++|++++
T Consensus         1 R~L~Ls~n~l~~--l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHKDLTV--LC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCN   74 (124)
T ss_dssp             SEEECTTSCCSS--CC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCS
T ss_pred             CEEEcCCCCCCC--Cc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-C-ccccccccCeEECCC
Confidence            579999999986  44 4889999999999999999 6788889999999999999999864 3 488999999999999


Q ss_pred             ccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEE
Q 044082          165 VDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALL  213 (243)
Q Consensus       165 n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L  213 (243)
                      |.+...+. ...+..+++|+.+++++|.++........+...+++|+.+
T Consensus        75 N~i~~~~~-~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          75 NRLQQSAA-IQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             SCCCSSST-TGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CccCCCCC-chhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            99998864 2467889999999999999976543223444444888776

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=3.8e-15  Score=115.34  Aligned_cols=177  Identities=18%  Similarity=0.118  Sum_probs=113.1

Q ss_pred             CceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCC-ccccccCCcCCC
Q 044082           50 GHVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSL-ANFSGRIPYQLG  128 (243)
Q Consensus        50 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~l~  128 (243)
                      ..++.||+++        |.++...+..|.++++|++|++++|.+.....+..+..++.++++.+.. +.+....+..+.
T Consensus        29 ~~l~~L~Ls~--------n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~  100 (242)
T d1xwdc1          29 RNAIELRFVL--------TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQ  100 (242)
T ss_dssp             SCCSEEEEES--------CCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEE
T ss_pred             CCCCEEECcC--------CcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccc
Confidence            3688999999        5777544557899999999999999887641244577888888888654 566655666678


Q ss_pred             CCCCCcEEEccCCccccCCcc-------------------------ccCCC-CCCCEEEcCCccccCCcchHHHhhcccc
Q 044082          129 NLTNLQSLNLGYNSLYVSKFG-------------------------WLSHL-NKLTQLDLDFVDLSEASDWLQVITSLAS  182 (243)
Q Consensus       129 ~l~~L~~L~l~~n~l~~~~~~-------------------------~l~~l-~~L~~L~l~~n~l~~~~~~~~~~~~l~~  182 (243)
                      .+++|+++++.+|.+....+.                         .+..+ ..++.+++.+|.++..+.   ......+
T Consensus       101 ~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~---~~~~~~~  177 (242)
T d1xwdc1         101 NLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHN---CAFNGTQ  177 (242)
T ss_dssp             CCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECT---TTTTTCC
T ss_pred             ccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccccccc---ccccchh
Confidence            888888888888876532211                         11111 244555555665555532   1122233


Q ss_pred             cccc-ccccccCCCCCCCCcccccCCCCCcEEECCCCccccccchhHHhhhccCceeeCC
Q 044082          183 LRDL-YLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYHWLFKISSNLLALDLN  241 (243)
Q Consensus       183 L~~L-~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~l~~~L~~L~l~  241 (243)
                      +.++ .+.+|.++.++.  ..+..+ ++|+.|++++|+|+...+..+.+++. |+.+++.
T Consensus       178 l~~~~~l~~n~l~~l~~--~~f~~l-~~L~~L~Ls~N~l~~l~~~~~~~l~~-L~~l~~~  233 (242)
T d1xwdc1         178 LDELNLSDNNNLEELPN--DVFHGA-SGPVILDISRTRIHSLPSYGLENLKK-LRARSTY  233 (242)
T ss_dssp             EEEEECTTCTTCCCCCT--TTTTTS-CCCSEEECTTSCCCCCCSSSCTTCCE-EESSSEE
T ss_pred             hhccccccccccccccH--HHhcCC-CCCCEEECCCCcCCccCHHHHcCCcc-cccCcCC
Confidence            3333 455666666554  344555 88888888888888433345666666 7666653

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=4.1e-15  Score=118.14  Aligned_cols=180  Identities=21%  Similarity=0.159  Sum_probs=129.4

Q ss_pred             CceEEEecCCCCCCCCCCCCcccc-cchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCc-cccccCC-cC
Q 044082           50 GHVIMLNLKYKVDPVCPNRPLRGN-INSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLA-NFSGRIP-YQ  126 (243)
Q Consensus        50 ~~l~~L~l~~~~~~~~~~~~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~-~~  126 (243)
                      .++++||++++        .+... +...+.++++|++|+++++.+... .+..+..+++|++|++++| .+++..- ..
T Consensus        46 ~~L~~LdLs~~--------~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~-~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l  116 (284)
T d2astb2          46 FRVQHMDLSNS--------VIEVSTLHGILSQCSKLQNLSLEGLRLSDP-IVNTLAKNSNLVRLNLSGCSGFSEFALQTL  116 (284)
T ss_dssp             BCCCEEECTTC--------EECHHHHHHHHTTBCCCSEEECTTCBCCHH-HHHHHTTCTTCSEEECTTCBSCCHHHHHHH
T ss_pred             CCCCEEECCCC--------ccCHHHHHHHHHhCCCcccccccccCCCcH-HHHHHhcCCCCcCccccccccccccccchh
Confidence            47899999984        55543 455678899999999999988765 7778889999999999986 4543221 22


Q ss_pred             CCCCCCCcEEEccCCc-cccCC-ccccC-CCCCCCEEEcCCcc--ccCCcchHHHhhcccccccccccccc-CCCCCCCC
Q 044082          127 LGNLTNLQSLNLGYNS-LYVSK-FGWLS-HLNKLTQLDLDFVD--LSEASDWLQVITSLASLRDLYLASST-LPSINRPS  200 (243)
Q Consensus       127 l~~l~~L~~L~l~~n~-l~~~~-~~~l~-~l~~L~~L~l~~n~--l~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~  200 (243)
                      ...+++|++|+++++. ++... ...+. ..++|+.|+++++.  +++. .+......+++|++|++++|. +++...  
T Consensus       117 ~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~-~l~~l~~~~~~L~~L~L~~~~~itd~~~--  193 (284)
T d2astb2         117 LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKS-DLSTLVRRCPNLVHLDLSDSVMLKNDCF--  193 (284)
T ss_dssp             HHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHH-HHHHHHHHCTTCSEEECTTCTTCCGGGG--
T ss_pred             hHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccc-cccccccccccccccccccccCCCchhh--
Confidence            3467899999999863 44321 12222 24689999998753  3332 233355678899999999864 554433  


Q ss_pred             cccccCCCCCcEEECCCC-ccccccchhHHhhhccCceeeCCCC
Q 044082          201 LSSMNSSTSLALLDLSSC-GLSNSAYHWLFKISSNLLALDLNSN  243 (243)
Q Consensus       201 ~~~~~~~~~L~~L~L~~n-~i~~~~~~~l~~l~~~L~~L~l~~N  243 (243)
                      ..+..+ ++|++|++++| .|++.....++++++ |++|+++++
T Consensus       194 ~~l~~~-~~L~~L~L~~C~~i~~~~l~~L~~~~~-L~~L~l~~~  235 (284)
T d2astb2         194 QEFFQL-NYLQHLSLSRCYDIIPETLLELGEIPT-LKTLQVFGI  235 (284)
T ss_dssp             GGGGGC-TTCCEEECTTCTTCCGGGGGGGGGCTT-CCEEECTTS
T ss_pred             hhhccc-CcCCEEECCCCCCCChHHHHHHhcCCC-CCEEeeeCC
Confidence            456666 89999999984 788777778888888 999998764

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.44  E-value=2.3e-15  Score=113.33  Aligned_cols=115  Identities=23%  Similarity=0.285  Sum_probs=67.8

Q ss_pred             ccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccC
Q 044082           73 NINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLS  152 (243)
Q Consensus        73 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~  152 (243)
                      .++..++.+++|++|++++|.++.  ++ .+..+++|++|++++|.+. .++.....++.|++|++++|.++..  ..+.
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~~--i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~  112 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIE  112 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEESC--CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH--HHHH
T ss_pred             hhhhHHhcccccceeECcccCCCC--cc-cccCCccccChhhcccccc-ccccccccccccccccccccccccc--cccc
Confidence            345566777777777777777665  33 3666677777777777666 4443333344566666666666532  2245


Q ss_pred             CCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCC
Q 044082          153 HLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLP  194 (243)
Q Consensus       153 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~  194 (243)
                      .+++|++|++++|.+.+.+. ...+..+++|+.|++++|.+.
T Consensus       113 ~l~~L~~L~L~~N~i~~~~~-~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         113 KLVNLRVLYMSNNKITNWGE-IDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             HHHHSSEEEESEEECCCHHH-HHHHTTTTTCSEEEECSSHHH
T ss_pred             ccccccccccccchhccccc-cccccCCCccceeecCCCccc
Confidence            55666666666666655532 124555666666666666554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2e-13  Score=105.41  Aligned_cols=164  Identities=19%  Similarity=0.183  Sum_probs=112.0

Q ss_pred             CcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCc-CCCCCCCCcEEEcc-CCccccC
Q 044082           69 PLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPY-QLGNLTNLQSLNLG-YNSLYVS  146 (243)
Q Consensus        69 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~-~n~l~~~  146 (243)
                      +++ .+|..+.  +++++|++++|.++.. .+..|.++++|++|++++|.+...++. .+..++.++++.+. .|.+...
T Consensus        19 ~l~-~iP~~l~--~~l~~L~Ls~n~i~~l-~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~   94 (242)
T d1xwdc1          19 KVT-EIPSDLP--RNAIELRFVLTKLRVI-QKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI   94 (242)
T ss_dssp             SCS-SCCSCSC--SCCSEEEEESCCCCEE-CTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEE
T ss_pred             CCC-CcCCCCC--CCCCEEECcCCcCCcc-ChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccc
Confidence            444 4665442  5799999999999874 445689999999999999998755544 57789999999876 4677777


Q ss_pred             CccccCCCCCCCEEEcCCccccCCcchHHHhhccccc-------------------------cccccccccCCCCCCCCc
Q 044082          147 KFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASL-------------------------RDLYLASSTLPSINRPSL  201 (243)
Q Consensus       147 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L-------------------------~~L~l~~n~~~~~~~~~~  201 (243)
                      .+..+..+++|+++++.+|.+...+.+ ..+..+..+                         ..+++++|.++.+..   
T Consensus        95 ~~~~~~~l~~L~~l~l~~~~l~~~~~~-~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~---  170 (242)
T d1xwdc1          95 NPEAFQNLPNLQYLLISNTGIKHLPDV-HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHN---  170 (242)
T ss_dssp             CTTSEECCTTCCEEEEESCCCCSCCCC-TTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECT---
T ss_pred             ccccccccccccccccchhhhcccccc-cccccccccccccccccccccccccccccccccceeeeccccccccccc---
Confidence            778889999999999999988766421 122222333                         333444444443322   


Q ss_pred             ccccCCCCCcEE-ECCCCccccccch-hHHhhhccCceeeCCCC
Q 044082          202 SSMNSSTSLALL-DLSSCGLSNSAYH-WLFKISSNLLALDLNSN  243 (243)
Q Consensus       202 ~~~~~~~~L~~L-~L~~n~i~~~~~~-~l~~l~~~L~~L~l~~N  243 (243)
                      ..... .++..+ ++.+|+++ .+|. .+.++++ |++|++++|
T Consensus       171 ~~~~~-~~l~~~~~l~~n~l~-~l~~~~f~~l~~-L~~L~Ls~N  211 (242)
T d1xwdc1         171 CAFNG-TQLDELNLSDNNNLE-ELPNDVFHGASG-PVILDISRT  211 (242)
T ss_dssp             TTTTT-CCEEEEECTTCTTCC-CCCTTTTTTSCC-CSEEECTTS
T ss_pred             ccccc-hhhhccccccccccc-cccHHHhcCCCC-CCEEECCCC
Confidence            12223 444444 46777787 4544 5677888 999999886

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.5e-14  Score=114.84  Aligned_cols=161  Identities=22%  Similarity=0.245  Sum_probs=118.3

Q ss_pred             ccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCC-ccccCCcc-ccCCCCC
Q 044082           79 LELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYN-SLYVSKFG-WLSHLNK  156 (243)
Q Consensus        79 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~-~l~~l~~  156 (243)
                      .....|++|+++++.++...++..+..+++|++|++++|.+.+..+..++.+++|++|+++++ .++..... ....+++
T Consensus        43 ~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~  122 (284)
T d2astb2          43 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR  122 (284)
T ss_dssp             CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred             ccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHh
Confidence            345689999999998875435666788999999999999988777778888999999999985 46533222 2346789


Q ss_pred             CCEEEcCCcc-ccCCcchHHHhhc-ccccccccccccc--CCCCCCCCcccccCCCCCcEEECCCC-ccccccchhHHhh
Q 044082          157 LTQLDLDFVD-LSEASDWLQVITS-LASLRDLYLASST--LPSINRPSLSSMNSSTSLALLDLSSC-GLSNSAYHWLFKI  231 (243)
Q Consensus       157 L~~L~l~~n~-l~~~~~~~~~~~~-l~~L~~L~l~~n~--~~~~~~~~~~~~~~~~~L~~L~L~~n-~i~~~~~~~l~~l  231 (243)
                      |++|+++++. +++.. +...+.. .+.|++|+++++.  ++....  ..+...+++|++|++++| .+++..+..+.++
T Consensus       123 L~~L~ls~c~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~i~~~~l--~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~  199 (284)
T d2astb2         123 LDELNLSWCFDFTEKH-VQVAVAHVSETITQLNLSGYRKNLQKSDL--STLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL  199 (284)
T ss_dssp             CCEEECCCCTTCCHHH-HHHHHHHSCTTCCEEECCSCGGGSCHHHH--HHHHHHCTTCSEEECTTCTTCCGGGGGGGGGC
T ss_pred             cccccccccccccccc-chhhhcccccccchhhhcccccccccccc--cccccccccccccccccccCCCchhhhhhccc
Confidence            9999999864 44332 2223433 4789999998753  332111  223232399999999986 5888888889999


Q ss_pred             hccCceeeCCCC
Q 044082          232 SSNLLALDLNSN  243 (243)
Q Consensus       232 ~~~L~~L~l~~N  243 (243)
                      ++ |++|++++|
T Consensus       200 ~~-L~~L~L~~C  210 (284)
T d2astb2         200 NY-LQHLSLSRC  210 (284)
T ss_dssp             TT-CCEEECTTC
T ss_pred             Cc-CCEEECCCC
Confidence            98 999999874

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.40  E-value=8.9e-16  Score=115.62  Aligned_cols=145  Identities=21%  Similarity=0.202  Sum_probs=107.5

Q ss_pred             CcEEEccCCC--CCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEE
Q 044082           84 LNYLDLSVND--FLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLD  161 (243)
Q Consensus        84 L~~L~l~~n~--l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  161 (243)
                      ++.+++.+..  ++.  ++..+..+++|++|++++|.++ .++ .+..+++|++|++++|.++. ++.....+++|++|+
T Consensus        25 ~~~~~l~~~~~~i~~--l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L~   99 (198)
T d1m9la_          25 AEKVELHGMIPPIEK--MDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELW   99 (198)
T ss_dssp             CSCEECCBCCTTCCC--CHHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEECS-CSSHHHHHHHCCEEE
T ss_pred             cceeeeecccCchhh--hhhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhccccccc-ccccccccccccccc
Confidence            4445555442  322  6778899999999999999998 454 47788999999999999874 344344456799999


Q ss_pred             cCCccccCCcchHHHhhccccccccccccccCCCCCCCCcccccCCCCCcEEECCCCccccccch----------hHHhh
Q 044082          162 LDFVDLSEASDWLQVITSLASLRDLYLASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAYH----------WLFKI  231 (243)
Q Consensus       162 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~----------~l~~l  231 (243)
                      +++|.++..+    .+..+++|+.|++++|+++..... ..+..+ ++|+.|++++|.++...+.          .+..+
T Consensus       100 l~~N~i~~l~----~~~~l~~L~~L~L~~N~i~~~~~~-~~l~~l-~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~l  173 (198)
T d1m9la_         100 ISYNQIASLS----GIEKLVNLRVLYMSNNKITNWGEI-DKLAAL-DKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRL  173 (198)
T ss_dssp             CSEEECCCHH----HHHHHHHSSEEEESEEECCCHHHH-HHHTTT-TTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHC
T ss_pred             cccccccccc----cccccccccccccccchhcccccc-ccccCC-CccceeecCCCccccCcccccchhhHHHHHHHHC
Confidence            9999988763    567888999999999998765320 234555 9999999999988753332          26778


Q ss_pred             hccCceeeC
Q 044082          232 SSNLLALDL  240 (243)
Q Consensus       232 ~~~L~~L~l  240 (243)
                      |+ |+.||-
T Consensus       174 p~-L~~LD~  181 (198)
T d1m9la_         174 PN-LKKLDG  181 (198)
T ss_dssp             SS-CCEESS
T ss_pred             CC-cCEeCC
Confidence            88 988874

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.30  E-value=2.5e-13  Score=110.46  Aligned_cols=182  Identities=18%  Similarity=0.118  Sum_probs=113.6

Q ss_pred             CceEEEecCCCCCCCCCCCCcccc----cchhhccCCCCcEEEccCCCCCCCCcch-------------hhcCCCCCcEE
Q 044082           50 GHVIMLNLKYKVDPVCPNRPLRGN----INSSLLELQHLNYLDLSVNDFLGNPIPE-------------FIGFFTKLRFL  112 (243)
Q Consensus        50 ~~l~~L~l~~~~~~~~~~~~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~-------------~~~~l~~L~~L  112 (243)
                      ++++.|++++|        .+...    +...+...++|+.|++++|.+... -..             .....+.|+.+
T Consensus        93 ~~L~~L~L~~n--------~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~-~~~~l~~~l~~~~~~~~~~~~~~L~~l  163 (344)
T d2ca6a1          93 PKLHTVRLSDN--------AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQ-AGAKIARALQELAVNKKAKNAPPLRSI  163 (344)
T ss_dssp             TTCCEEECCSC--------CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHH-HHHHHHHHHHHHHHHHHHHTCCCCCEE
T ss_pred             CCccccccccc--------ccccccccchhhhhcccccchheeccccccccc-ccccccccccccccccccccCccccee
Confidence            35666666663        44332    233344556666666666654321 000             01234566666


Q ss_pred             ecCCcccccc----CCcCCCCCCCCcEEEccCCccccC-----CccccCCCCCCCEEEcCCccccCC--cchHHHhhccc
Q 044082          113 DLSLANFSGR----IPYQLGNLTNLQSLNLGYNSLYVS-----KFGWLSHLNKLTQLDLDFVDLSEA--SDWLQVITSLA  181 (243)
Q Consensus       113 ~l~~~~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~-----~~~~l~~l~~L~~L~l~~n~l~~~--~~~~~~~~~l~  181 (243)
                      .+++|.+...    +...++..+.|++|++++|.++..     +...+..+++|+.|++++|.+...  ..+...+..++
T Consensus       164 ~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~  243 (344)
T d2ca6a1         164 ICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP  243 (344)
T ss_dssp             ECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT
T ss_pred             ecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccc
Confidence            6666655422    122234567899999999987643     234466778999999999988665  33455678888


Q ss_pred             cccccccccccCCCCCCCCccc----ccC-CCCCcEEECCCCccccccch----hHH-hhhccCceeeCCCC
Q 044082          182 SLRDLYLASSTLPSINRPSLSS----MNS-STSLALLDLSSCGLSNSAYH----WLF-KISSNLLALDLNSN  243 (243)
Q Consensus       182 ~L~~L~l~~n~~~~~~~~~~~~----~~~-~~~L~~L~L~~n~i~~~~~~----~l~-~l~~~L~~L~l~~N  243 (243)
                      +|++|++++|.+++...  ..+    ... ...|++|++++|.|++....    .+. +.+. |++|++++|
T Consensus       244 ~L~~L~Ls~n~i~~~g~--~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~-L~~L~l~~N  312 (344)
T d2ca6a1         244 NLRELGLNDCLLSARGA--AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD-LLFLELNGN  312 (344)
T ss_dssp             TCCEEECTTCCCCHHHH--HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTT-CCEEECTTS
T ss_pred             cchhhhhhcCccCchhh--HHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCC-CCEEECCCC
Confidence            99999999998865322  122    111 16799999999999865433    332 3456 999999887

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=4.2e-11  Score=86.08  Aligned_cols=96  Identities=18%  Similarity=0.079  Sum_probs=78.7

Q ss_pred             ccchhhccCCCCcEEEccCC-CCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCcccc
Q 044082           73 NINSSLLELQHLNYLDLSVN-DFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWL  151 (243)
Q Consensus        73 ~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l  151 (243)
                      ..|..+..+++|+.|+++++ .++.. .+..|..+++|+.|++++|.++...+..|..+++|++|++++|+++...++.+
T Consensus        22 ~~p~~l~~l~~l~~L~l~~n~~l~~i-~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~  100 (156)
T d2ifga3          22 DSLHHLPGAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTV  100 (156)
T ss_dssp             TTTTTSCSCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTT
T ss_pred             cCcccccCccccCeeecCCCcccccc-CchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhh
Confidence            35667788899999999766 47764 56778999999999999999996667778999999999999999986655555


Q ss_pred             CCCCCCCEEEcCCccccCC
Q 044082          152 SHLNKLTQLDLDFVDLSEA  170 (243)
Q Consensus       152 ~~l~~L~~L~l~~n~l~~~  170 (243)
                      .. .+|+.|++++|.+.-.
T Consensus       101 ~~-~~l~~L~L~~Np~~C~  118 (156)
T d2ifga3         101 QG-LSLQELVLSGNPLHCS  118 (156)
T ss_dssp             CS-CCCCEEECCSSCCCCC
T ss_pred             cc-ccccccccCCCcccCC
Confidence            54 4799999999998644

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.1e-11  Score=89.18  Aligned_cols=106  Identities=19%  Similarity=0.136  Sum_probs=67.5

Q ss_pred             CcEEEccCCCCCCCCcchhhcCCCCCcEEecCCc-cccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEc
Q 044082           84 LNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLA-NFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDL  162 (243)
Q Consensus        84 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  162 (243)
                      .+.++.+++.++.  .|..+..+++|++|++.++ .++...+..|..+++|+.|++++|+++...+..|..+++|++|++
T Consensus        10 ~~~l~c~~~~~~~--~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3          10 SSGLRCTRDGALD--SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSCEECCSSCCCT--TTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CCeEEecCCCCcc--CcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence            3456666666655  5666666777777777654 355344445667777777777777777666666777777777777


Q ss_pred             CCccccCCcchHHHhhccccccccccccccCC
Q 044082          163 DFVDLSEASDWLQVITSLASLRDLYLASSTLP  194 (243)
Q Consensus       163 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~  194 (243)
                      ++|.++.++.  ..+. ...|++|++++|.+.
T Consensus        88 s~N~l~~l~~--~~~~-~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          88 SFNALESLSW--KTVQ-GLSLQELVLSGNPLH  116 (156)
T ss_dssp             CSSCCSCCCS--TTTC-SCCCCEEECCSSCCC
T ss_pred             cCCCCcccCh--hhhc-cccccccccCCCccc
Confidence            7777776643  1232 335667777777664

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.15  E-value=4.9e-12  Score=102.62  Aligned_cols=166  Identities=20%  Similarity=0.191  Sum_probs=106.2

Q ss_pred             hhhccCCCCcEEEccCCCCCCCC---cchhhcCCCCCcEEecCCccccccCCc-------------CCCCCCCCcEEEcc
Q 044082           76 SSLLELQHLNYLDLSVNDFLGNP---IPEFIGFFTKLRFLDLSLANFSGRIPY-------------QLGNLTNLQSLNLG  139 (243)
Q Consensus        76 ~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~l~~~~~~~~~~~-------------~l~~l~~L~~L~l~  139 (243)
                      ..+...++|+.|++++|.+....   +...+..+++|++|++++|.+......             .....+.|+.+.++
T Consensus        87 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~  166 (344)
T d2ca6a1          87 QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICG  166 (344)
T ss_dssp             HHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECC
T ss_pred             HHHhhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecc
Confidence            34456678888888888776541   233445677888888888766421110             11245678888888


Q ss_pred             CCccccCCc----cccCCCCCCCEEEcCCccccCCc---chHHHhhccccccccccccccCCCCCC--CCcccccCCCCC
Q 044082          140 YNSLYVSKF----GWLSHLNKLTQLDLDFVDLSEAS---DWLQVITSLASLRDLYLASSTLPSINR--PSLSSMNSSTSL  210 (243)
Q Consensus       140 ~n~l~~~~~----~~l~~l~~L~~L~l~~n~l~~~~---~~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~~~~~~L  210 (243)
                      +|.++....    ..+....+|+.|+++.|.+....   .+...+..+++|+.|++++|.++....  ....+... ++|
T Consensus       167 ~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~-~~L  245 (344)
T d2ca6a1         167 RNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW-PNL  245 (344)
T ss_dssp             SSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGC-TTC
T ss_pred             cccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccccccccc-ccc
Confidence            887764322    23445678999999998887531   122345677889999999888753211  00233445 889


Q ss_pred             cEEECCCCccccccchhHHh------hhccCceeeCCCC
Q 044082          211 ALLDLSSCGLSNSAYHWLFK------ISSNLLALDLNSN  243 (243)
Q Consensus       211 ~~L~L~~n~i~~~~~~~l~~------l~~~L~~L~l~~N  243 (243)
                      ++|++++|.|++.....+..      .+. |++|++++|
T Consensus       246 ~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~-L~~L~ls~N  283 (344)
T d2ca6a1         246 RELGLNDCLLSARGAAAVVDAFSKLENIG-LQTLRLQYN  283 (344)
T ss_dssp             CEEECTTCCCCHHHHHHHHHHHHTCSSCC-CCEEECCSS
T ss_pred             hhhhhhcCccCchhhHHHHHHhhhccCCC-CCEEECCCC
Confidence            99999999988654444432      234 889999887

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.00  E-value=4.9e-09  Score=84.05  Aligned_cols=98  Identities=22%  Similarity=0.192  Sum_probs=76.1

Q ss_pred             ceEEEecCCCCCCCCCCCCcccccchhhccCCCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCC
Q 044082           51 HVIMLNLKYKVDPVCPNRPLRGNINSSLLELQHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNL  130 (243)
Q Consensus        51 ~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l  130 (243)
                      ++++|||++        ++++ .+|+.   .++|++|++++|.++.  +|..   +.+|+.|++++|.++ .++..   .
T Consensus        39 ~l~~LdLs~--------~~L~-~lp~~---~~~L~~L~Ls~N~l~~--lp~~---~~~L~~L~l~~n~l~-~l~~l---p   97 (353)
T d1jl5a_          39 QAHELELNN--------LGLS-SLPEL---PPHLESLVASCNSLTE--LPEL---PQSLKSLLVDNNNLK-ALSDL---P   97 (353)
T ss_dssp             TCSEEECTT--------SCCS-CCCSC---CTTCSEEECCSSCCSS--CCCC---CTTCCEEECCSSCCS-CCCSC---C
T ss_pred             CCCEEEeCC--------CCCC-CCCCC---CCCCCEEECCCCCCcc--cccc---hhhhhhhhhhhcccc-hhhhh---c
Confidence            578899999        4766 46643   4789999999999986  6754   468899999999887 44421   2


Q ss_pred             CCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCc
Q 044082          131 TNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEAS  171 (243)
Q Consensus       131 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~  171 (243)
                      +.|++|++++|.+.. +|. ++.+++|++|++.++.+...+
T Consensus        98 ~~L~~L~L~~n~l~~-lp~-~~~l~~L~~L~l~~~~~~~~~  136 (353)
T d1jl5a_          98 PLLEYLGVSNNQLEK-LPE-LQNSSFLKIIDVDNNSLKKLP  136 (353)
T ss_dssp             TTCCEEECCSSCCSS-CCC-CTTCTTCCEEECCSSCCSCCC
T ss_pred             ccccccccccccccc-ccc-hhhhccceeeccccccccccc
Confidence            469999999999875 444 678899999999999887664

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.93  E-value=6.7e-09  Score=83.25  Aligned_cols=99  Identities=19%  Similarity=0.222  Sum_probs=79.4

Q ss_pred             CCCcEEEccCCCCCCCCcchhhcCCCCCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEE
Q 044082           82 QHLNYLDLSVNDFLGNPIPEFIGFFTKLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLD  161 (243)
Q Consensus        82 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  161 (243)
                      .++++|+++++.++.  +|+.   .++|++|++++|.++ .+|..+   .+|+.|++.+|+++.. +. +  .+.|++|+
T Consensus        38 ~~l~~LdLs~~~L~~--lp~~---~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~~l-~~-l--p~~L~~L~  104 (353)
T d1jl5a_          38 RQAHELELNNLGLSS--LPEL---PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLKAL-SD-L--PPLLEYLG  104 (353)
T ss_dssp             HTCSEEECTTSCCSC--CCSC---CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCSCC-CS-C--CTTCCEEE
T ss_pred             cCCCEEEeCCCCCCC--CCCC---CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccchh-hh-h--cccccccc
Confidence            468999999999986  6753   578999999999999 777654   5789999999988743 22 2  24699999


Q ss_pred             cCCccccCCcchHHHhhccccccccccccccCCCCC
Q 044082          162 LDFVDLSEASDWLQVITSLASLRDLYLASSTLPSIN  197 (243)
Q Consensus       162 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  197 (243)
                      +++|.+...|.    +..+++|++++++++.+....
T Consensus       105 L~~n~l~~lp~----~~~l~~L~~L~l~~~~~~~~~  136 (353)
T d1jl5a_         105 VSNNQLEKLPE----LQNSSFLKIIDVDNNSLKKLP  136 (353)
T ss_dssp             CCSSCCSSCCC----CTTCTTCCEEECCSSCCSCCC
T ss_pred             ccccccccccc----hhhhccceeeccccccccccc
Confidence            99999998864    467889999999998876543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=1.9e-10  Score=95.61  Aligned_cols=149  Identities=21%  Similarity=0.090  Sum_probs=66.5

Q ss_pred             hccCCCCcEEEccCCCCCCCCcchh----h-cCCCCCcEEecCCccccccCCcC----CCCCCCCcEEEccCCccccCC-
Q 044082           78 LLELQHLNYLDLSVNDFLGNPIPEF----I-GFFTKLRFLDLSLANFSGRIPYQ----LGNLTNLQSLNLGYNSLYVSK-  147 (243)
Q Consensus        78 ~~~l~~L~~L~l~~n~l~~~~~~~~----~-~~l~~L~~L~l~~~~~~~~~~~~----l~~l~~L~~L~l~~n~l~~~~-  147 (243)
                      +...+.++.+++++|.+... ....    + .....|+.++++++.+.......    +...++|++|++++|.++... 
T Consensus       279 l~~~~~l~~l~l~~n~i~~~-~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~  357 (460)
T d1z7xw1         279 LRAKESLKELSLAGNELGDE-GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV  357 (460)
T ss_dssp             HHHCTTCCEEECTTCCCHHH-HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHH
T ss_pred             cccccccccccccccccccc-ccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCccc
Confidence            34445555555555554321 1111    1 12234556666655554332221    123345666666666554321 


Q ss_pred             ---ccccC-CCCCCCEEEcCCccccCC--cchHHHhhccccccccccccccCCCCCC--CCcccccCCCCCcEEECCCCc
Q 044082          148 ---FGWLS-HLNKLTQLDLDFVDLSEA--SDWLQVITSLASLRDLYLASSTLPSINR--PSLSSMNSSTSLALLDLSSCG  219 (243)
Q Consensus       148 ---~~~l~-~l~~L~~L~l~~n~l~~~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~~~~~~L~~L~L~~n~  219 (243)
                         ++.+. ....|++|++++|.+++.  ..+++.+..+++|++|++++|.++....  ....+......|+.|++.+|.
T Consensus       358 ~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~  437 (460)
T d1z7xw1         358 RELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIY  437 (460)
T ss_dssp             HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred             chhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCC
Confidence               11222 234566666666666543  2233344555566666666665543211  000111111346666666666


Q ss_pred             cccccchh
Q 044082          220 LSNSAYHW  227 (243)
Q Consensus       220 i~~~~~~~  227 (243)
                      +..+....
T Consensus       438 ~~~~~~~~  445 (460)
T d1z7xw1         438 WSEEMEDR  445 (460)
T ss_dssp             CCHHHHHH
T ss_pred             CCHHHHHH
Confidence            55444333

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=5.5e-10  Score=80.60  Aligned_cols=65  Identities=28%  Similarity=0.363  Sum_probs=34.4

Q ss_pred             CCCCCcEEEccCCccccCC--ccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccccccccCCC
Q 044082          129 NLTNLQSLNLGYNSLYVSK--FGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLYLASSTLPS  195 (243)
Q Consensus       129 ~l~~L~~L~l~~n~l~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~  195 (243)
                      .++.|++|++++|+++...  +..+..+++|+.|++++|.+.+.+++ ..+ ....|+.+++++|.+..
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l-~~l-~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSEREL-DKI-KGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGH-HHH-TTCCCSSCCCTTSTTSS
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhh-hhh-hccccceeecCCCCcCc
Confidence            4556666666666665432  22344456666666666666665431 122 23346666666665544

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=1.1e-09  Score=90.84  Aligned_cols=112  Identities=20%  Similarity=0.136  Sum_probs=85.9

Q ss_pred             ceEEEecCCCCCCCCCCCCcccc-cchhhccCCCCcEEEccCCCCCCC---CcchhhcCCCCCcEEecCCcccccc----
Q 044082           51 HVIMLNLKYKVDPVCPNRPLRGN-INSSLLELQHLNYLDLSVNDFLGN---PIPEFIGFFTKLRFLDLSLANFSGR----  122 (243)
Q Consensus        51 ~l~~L~l~~~~~~~~~~~~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~~l~~L~~L~l~~~~~~~~----  122 (243)
                      .++.||+++        +.+++. +...+..++++++|+|++|.++..   .+...+..+++|++|++++|.+++.    
T Consensus         3 ~l~~ld~~~--------~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~   74 (460)
T d1z7xw1           3 DIQSLDIQC--------EELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHC   74 (460)
T ss_dssp             EEEEEEEES--------CCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHH
T ss_pred             CCCEEEeeC--------CcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHH
Confidence            689999999        577753 344567789999999999998742   1345678899999999999988632    


Q ss_pred             CCcCCC-CCCCCcEEEccCCccccC----CccccCCCCCCCEEEcCCccccCC
Q 044082          123 IPYQLG-NLTNLQSLNLGYNSLYVS----KFGWLSHLNKLTQLDLDFVDLSEA  170 (243)
Q Consensus       123 ~~~~l~-~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~  170 (243)
                      +...+. ...+|++|++++|.++..    ++..+..+++|++|++++|.+.+.
T Consensus        75 l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~  127 (460)
T d1z7xw1          75 VLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDA  127 (460)
T ss_dssp             HHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHH
T ss_pred             HHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhh
Confidence            223333 235799999999998764    345577889999999999998765

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.26  E-value=2.1e-07  Score=66.93  Aligned_cols=116  Identities=12%  Similarity=0.095  Sum_probs=76.6

Q ss_pred             cCCCCCcEEecCCc-ccccc----CCcCCCCCCCCcEEEccCCccccCCc----cccCCCCCCCEEEcCCccccCC--cc
Q 044082          104 GFFTKLRFLDLSLA-NFSGR----IPYQLGNLTNLQSLNLGYNSLYVSKF----GWLSHLNKLTQLDLDFVDLSEA--SD  172 (243)
Q Consensus       104 ~~l~~L~~L~l~~~-~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~----~~l~~l~~L~~L~l~~n~l~~~--~~  172 (243)
                      ...++|++|+++++ .+...    +...+...+.|++|++++|.+.....    +.+...++|+.|++++|.+.+.  ..
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            35688999999874 45432    23345567788999999888764322    3344567889999999888765  34


Q ss_pred             hHHHhhccccccccccccccCCCCCC-----CCcccccCCCCCcEEECCCCcc
Q 044082          173 WLQVITSLASLRDLYLASSTLPSINR-----PSLSSMNSSTSLALLDLSSCGL  220 (243)
Q Consensus       173 ~~~~~~~l~~L~~L~l~~n~~~~~~~-----~~~~~~~~~~~L~~L~L~~n~i  220 (243)
                      +...+...++|++|++++|.+..+..     ....+... ++|+.|+++.+..
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n-~sL~~l~l~~~~~  143 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEEN-ESLLRVGISFASM  143 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHC-SSCCEEECCCCCH
T ss_pred             HHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhC-CCccEeeCcCCCc
Confidence            55667777888888888886654321     00122334 7888888876654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=1.4e-07  Score=67.59  Aligned_cols=123  Identities=21%  Similarity=0.117  Sum_probs=81.5

Q ss_pred             CCcEEecCCccccccCCcCCCCCCCCcEEEccCCccccCCccccCCCCCCCEEEcCCccccCCcchHHHhhccccccccc
Q 044082          108 KLRFLDLSLANFSGRIPYQLGNLTNLQSLNLGYNSLYVSKFGWLSHLNKLTQLDLDFVDLSEASDWLQVITSLASLRDLY  187 (243)
Q Consensus       108 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~  187 (243)
                      ..+.|+++.....    ..+..+..+..+....+... .+......+++|++|++++|.++..+.+...+..+++|+.|+
T Consensus        23 ~~~~Ldls~l~~~----~~l~~~~~~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~   97 (162)
T d1koha1          23 SQQALDLKGLRSD----PDLVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILN   97 (162)
T ss_dssp             SSCCBCCCCCSSC----TTTTTTTCCCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCC
T ss_pred             hhCeeecccCCCC----chhhhccchhhcchhhhHhh-hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccc
Confidence            3455666654322    12333333333333333222 222334568899999999999999865556788899999999


Q ss_pred             cccccCCCCCCCCcccccCCCCCcEEECCCCccccccc-------hhHHhhhccCceee
Q 044082          188 LASSTLPSINRPSLSSMNSSTSLALLDLSSCGLSNSAY-------HWLFKISSNLLALD  239 (243)
Q Consensus       188 l~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~-------~~l~~l~~~L~~L~  239 (243)
                      +++|.+.....  ...... ..|+.+++++|.++....       ..+..+|+ |+.||
T Consensus        98 Ls~N~i~~l~~--l~~l~~-~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~-L~~LD  152 (162)
T d1koha1          98 LSGNELKSERE--LDKIKG-LKLEELWLDGNSLSDTFRDQSTYISAIRERFPK-LLRLD  152 (162)
T ss_dssp             CTTSCCCCGGG--HHHHTT-CCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTT-CCEET
T ss_pred             cccCccccchh--hhhhhc-cccceeecCCCCcCcCcccchhHHHHHHHHCCC-CCEEC
Confidence            99999988655  344455 679999999999985432       23455777 88886

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.95  E-value=2.6e-06  Score=61.04  Aligned_cols=112  Identities=13%  Similarity=0.038  Sum_probs=57.5

Q ss_pred             cCCCCcEEEccCC-CCCCCC---cchhhcCCCCCcEEecCCccccccCC----cCCCCCCCCcEEEccCCccccCC----
Q 044082           80 ELQHLNYLDLSVN-DFLGNP---IPEFIGFFTKLRFLDLSLANFSGRIP----YQLGNLTNLQSLNLGYNSLYVSK----  147 (243)
Q Consensus        80 ~l~~L~~L~l~~n-~l~~~~---~~~~~~~l~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~l~~n~l~~~~----  147 (243)
                      +.+.|+.|+++++ .+....   +-..+...++|++|++++|.+.+...    ..+...+.|++|++++|.++...    
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            3455666666553 232210   12234455556666666665553222    22334456666666666665432    


Q ss_pred             ccccCCCCCCCEEEcCCccccCC-----cchHHHhhccccccccccccc
Q 044082          148 FGWLSHLNKLTQLDLDFVDLSEA-----SDWLQVITSLASLRDLYLASS  191 (243)
Q Consensus       148 ~~~l~~l~~L~~L~l~~n~l~~~-----~~~~~~~~~l~~L~~L~l~~n  191 (243)
                      ...+...++|++|++.+|.+...     ..+...+...++|+.|+++.+
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            22345556677777766655433     223445555566776666544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.69  E-value=3.9e-06  Score=59.89  Aligned_cols=117  Identities=15%  Similarity=0.026  Sum_probs=71.9

Q ss_pred             hcCCCCCcEEecCC-cccccc----CCcCCCCCCCCcEEEccCCccccCCc----cccCCCCCCCEEEcCCccccCC--c
Q 044082          103 IGFFTKLRFLDLSL-ANFSGR----IPYQLGNLTNLQSLNLGYNSLYVSKF----GWLSHLNKLTQLDLDFVDLSEA--S  171 (243)
Q Consensus       103 ~~~l~~L~~L~l~~-~~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~----~~l~~l~~L~~L~l~~n~l~~~--~  171 (243)
                      ....++|++|++++ +.++..    +...+...++|++|++++|.++....    ..+....+++.+++.+|.+...  .
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~   92 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL   92 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHH
Confidence            34668888898887 445422    23345567888888888888765422    2344567888888888887655  3


Q ss_pred             chHHHhhcccccccccc--ccccCCCCCC--CCcccccCCCCCcEEECCCCcc
Q 044082          172 DWLQVITSLASLRDLYL--ASSTLPSINR--PSLSSMNSSTSLALLDLSSCGL  220 (243)
Q Consensus       172 ~~~~~~~~l~~L~~L~l--~~n~~~~~~~--~~~~~~~~~~~L~~L~L~~n~i  220 (243)
                      .+...+...++|+.++|  ++|.+.....  ....+... ++|+.|++..+..
T Consensus        93 ~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n-~~L~~L~l~~~~~  144 (166)
T d1io0a_          93 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKN-TTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHC-SSCCEEECCCSSH
T ss_pred             HHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhC-CCcCEEeCcCCCC
Confidence            34556666777776444  4455532111  00123344 7888888876654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.55  E-value=5.2e-06  Score=59.23  Aligned_cols=114  Identities=14%  Similarity=0.051  Sum_probs=63.3

Q ss_pred             ccCCCCcEEEccCC-CCCCCC---cchhhcCCCCCcEEecCCccccccCC----cCCCCCCCCcEEEccCCccccCC---
Q 044082           79 LELQHLNYLDLSVN-DFLGNP---IPEFIGFFTKLRFLDLSLANFSGRIP----YQLGNLTNLQSLNLGYNSLYVSK---  147 (243)
Q Consensus        79 ~~l~~L~~L~l~~n-~l~~~~---~~~~~~~l~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~l~~n~l~~~~---  147 (243)
                      .+.+.|++|+++++ .++...   +-..+..+++|++|++++|.+.....    ..+...+.++.++++.+.++...   
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            45566777777653 343221   22334456667777777776653322    22334566777777777665332   


Q ss_pred             -ccccCCCCCCCEEEc--CCccccCC--cchHHHhhcccccccccccccc
Q 044082          148 -FGWLSHLNKLTQLDL--DFVDLSEA--SDWLQVITSLASLRDLYLASST  192 (243)
Q Consensus       148 -~~~l~~l~~L~~L~l--~~n~l~~~--~~~~~~~~~l~~L~~L~l~~n~  192 (243)
                       .+.+...++|+.+++  +.|.+.+.  ..+...+...++|++|+++.+.
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence             234555666766444  45556443  2345566677777777776543