Citrus Sinensis ID: 044092

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470
MSNSSFYLPENLAPDDASPGWMNKADNAWQLTAATLVGMQSVPGLVILYGGAVKKKWAVNSAFMALYAFACVLVCWVLWGYRMSFGTERYIAFWGAPNVSLGENYLLQKAFLGKFPNATMVYFQFVFAAITLILIAGAVLGRMNFYAWMMFVPLWLTFSYTIGAFSIWCPDGWLSKLGLLDYSGGYVIHLSSGVAGYTAAFWVGPRLTRDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYVISTDASLAVLNTHVCTATSLITWLLLDRIFFGKTSVIGAVQGMITGLVCITPAAGIVQGWAAIIMGLCSGSIPWFTMMVVHKRSAMLQKVDDTMAVLHTHAVAGSLGGLLTGVFAEPKLNYLFYGYYAQYVGLFYGFDMGKVATGFRQIGIQLLGILFVVALNITTTSLICLFIRILVPLRMSEEDMEIGDEAAHGEEAYAIWGEGDGSENSRYDVELPVSTKNRAA
ccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEcccccccccccHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccEEEccHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHccHHHHcccccccccccccccccccccccccccccccc
ccccccccccccccccccccHcccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEccccccccccccHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcHHHHHHcccccHHHHcccEEccccccEEEHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEccHHEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccHHHcccccccccccccEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHcccHHHHcHHHHHHccccccccccccccccccccccccc
msnssfylpenlapddaspgwmnkadnAWQLTAATLVGMQSVPGLVILYGGAVKKKWAVNSAFMALYAFACVLVCWVLWGYRMSFGTERYIAfwgapnvslgenYLLQKAflgkfpnatMVYFQFVFAAITLILIAGAVLGRMNFYAWMMFVPLWLTFSYTigafsiwcpdgwlsklglldysggyvihlssgvagytaafwvgprltrdrerfppnNILLMLAGAGllwmgwtgfnggdpyvISTDASLAVLNTHVCTATSLITWLLLDRIFFGKTSVIGAVQGMITGLVCITPAAGIVQGWAAIIMGLCSGSIPWFTMMVVHKRSAMLQKVDDTMAVLHTHAVAGSLgglltgvfaepklnyLFYGYYAQYVGLFYgfdmgkvatGFRQIGIQLLGILFVVALNITTTSLICLFIRIlvplrmseedmeigdeaahgeeayaiwgegdgsensrydvelpvstknraa
msnssfylpenlapddasPGWMNKADNAWQLTAATLVGMQSVPGLVILYGGAVKKKWAVNSAFMALYAFACVLVCWVLWGYRMSFGTERYIAFWGAPNVSLGENYLLQKAFLGKFPNATMVYFQFVFAAITLILIAGAVLGRMNFYAWMMFVPLWLTFSYTIGAFSIWCPDGWLSKLGLLDYSGGYVIHLSSGVAGYTAAFWVGPRLTRDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYVISTDASLAVLNTHVCTATSLITWLLLDRIFFGKTSVIGAVQGMITGLVCITPAAGIVQGWAAIIMGLCSGSIPWFTMMVVHKRSAMLQKVDDTMAVLHTHAVAGSLGGLLTGVFAEPKLNYLFYGYYAQYVGLFYGFDMGKVATGFRQIGIQLLGILFVVALNITTTSLICLFIRILVPLRMSEEDMEIGDEAAHGEEAYAIWgegdgsensrydvelpvstknraa
MSNSSFYLPENLAPDDASPGWMNKADNAWQLTAATLVGMQSVPGLVILYGGAVKKKWAVNSAFMALYAFACVLVCWVLWGYRMSFGTERYIAFWGAPNVSLGENYLLQKAFLGKFPNATMVYFQFVFAAITLILIAGAVLGRMNFYAWMMFVPLWLTFSYTIGAFSIWCPDGWLSKLGLLDYSGGYVIHLSSGVAGYTAAFWVGPRLTRDRERFPPNNIllmlagagllwmgwTGFNGGDPYVISTDASLAVLNTHVCTATSLITWLLLDRIFFGKTSVIGAVQGMITGLVCITPAAGIVQGWAAIIMGLCSGSIPWFTMMVVHKRSAMLQKVDDTMAVLHTHAVAGSLGGLLTGVFAEPKLNYLFYGYYAQYVGLFYGFDMGKVATGFRQIGIQLLGILFVVALNITTTSLICLFIRILVPLRMSEEDMEIGDEAAHGEEAYAIWGEGDGSENSRYDVELPVSTKNRAA
********************WMNKADNAWQLTAATLVGMQSVPGLVILYGGAVKKKWAVNSAFMALYAFACVLVCWVLWGYRMSFGTERYIAFWGAPNVSLGENYLLQKAFLGKFPNATMVYFQFVFAAITLILIAGAVLGRMNFYAWMMFVPLWLTFSYTIGAFSIWCPDGWLSKLGLLDYSGGYVIHLSSGVAGYTAAFWVGPRLTRDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYVISTDASLAVLNTHVCTATSLITWLLLDRIFFGKTSVIGAVQGMITGLVCITPAAGIVQGWAAIIMGLCSGSIPWFTMMVVHKRSAMLQKVDDTMAVLHTHAVAGSLGGLLTGVFAEPKLNYLFYGYYAQYVGLFYGFDMGKVATGFRQIGIQLLGILFVVALNITTTSLICLFIRILVPLRM***************EAYAIWG***********************
********PENLAPDDASPGWMNKADNAWQLTAATLVGMQSVPGLVILYGGAVKKKWAVNSAFMALYAFACVLVCWVLWGYRMSFGTERYIAFWGAPNVSLGENYLLQKAFLGKFPNATMVYFQFVFAAITLILIAGAVLGRMNFYAWMMFVPLWLTFSYTIGAFSIWCPDGWLSKLGLLDYSGGYVIHLSSGVAGYTAAFWVGPRLTRDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYVISTDASLAVLNTHVCTATSLITWLLLDRIFFGKTSVIGAVQGMITGLVCITPAAGIVQGWAAIIMGLCSGSIPWFTMMVVHKRSAMLQKVDDTMAVLHTHAVAGSLGGLLTGVFAEPKLNYLFYGYYAQYVGLFYGFDMGKVATGFRQIGIQLLGILFVVALNITTTSLICLFIRILVPLRMSEEDMEIGDEAAHGEEAYAIWG***********************
********PENLAPDDASPGWMNKADNAWQLTAATLVGMQSVPGLVILYGGAVKKKWAVNSAFMALYAFACVLVCWVLWGYRMSFGTERYIAFWGAPNVSLGENYLLQKAFLGKFPNATMVYFQFVFAAITLILIAGAVLGRMNFYAWMMFVPLWLTFSYTIGAFSIWCPDGWLSKLGLLDYSGGYVIHLSSGVAGYTAAFWVGPRLTRDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYVISTDASLAVLNTHVCTATSLITWLLLDRIFFGKTSVIGAVQGMITGLVCITPAAGIVQGWAAIIMGLCSGSIPWFTMMVVHKRSAMLQKVDDTMAVLHTHAVAGSLGGLLTGVFAEPKLNYLFYGYYAQYVGLFYGFDMGKVATGFRQIGIQLLGILFVVALNITTTSLICLFIRILVPLRMSEEDMEIGDEAAHGEEAYAIWGEGDGSENSRYDVELPVSTKNRAA
********PENLA***ASPGWMNKADNAWQLTAATLVGMQSVPGLVILYGGAVKKKWAVNSAFMALYAFACVLVCWVLWGYRMSFGTERYIAFWGAPNVSLGENYLLQKAFLGKFPNATMVYFQFVFAAITLILIAGAVLGRMNFYAWMMFVPLWLTFSYTIGAFSIWCPDGWLSKLGLLDYSGGYVIHLSSGVAGYTAAFWVGPRLTRDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYVISTDASLAVLNTHVCTATSLITWLLLDRIFFGKTSVIGAVQGMITGLVCITPAAGIVQGWAAIIMGLCSGSIPWFTMMVVHKRSAMLQKVDDTMAVLHTHAVAGSLGGLLTGVFAEPKLNYLFYGYYAQYVGLFYGFDMGKVATGFRQIGIQLLGILFVVALNITTTSLICLFIRILVPLRMSEEDMEIGDEAAHGEEAYAIWGEG*********************
ooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MSNSSFYLPENLAPDDASPGWMNKADNAWQLTAATLVGMQSVPGLVILYGGAVKKKWAVNSAFMALYAFACVLVCWVLWGYRMSFGTERYIAFWGAPNVSLGENYLLQKAFLGKFPNATMVYFQFVFAAITLILIAGAVLGRMNFYAWMMFVPLWLTFSYTIGAFSIWCPDGWLSKLGLLDYSGGYVIHLSSGVAGYTAAFWVGPRLTRDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYVISTDASLAVLNTHVCTATSLITWLLLDRIFFGKTSVIGAVQGMITGLVCITPAAGIVQGWAAIIMGLCSGSIPWFTMMVVHKRSAMLQKVDDTMAVLHTHAVAGSLGGLLTGVFAEPKLNYLFYGYYAQYVGLFYGFDMGKVATGFRQIGIQLLGILFVVALNITTTSLICLFIRILVPLRMSEEDMEIGDEAAHGEEAYAIWGEGDGSENSRYDVELPVSTKNRAA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query470 2.2.26 [Sep-21-2011]
Q84KJ6498 Ammonium transporter 3 me yes no 0.955 0.901 0.617 1e-163
Q69T29480 Ammonium transporter 3 me no no 0.940 0.920 0.592 1e-153
Q851M9479 Ammonium transporter 3 me no no 0.968 0.949 0.584 1e-150
Q84KJ7486 Ammonium transporter 2 me no no 0.923 0.893 0.607 1e-149
Q9M6N7475 Ammonium transporter 2 OS yes no 0.914 0.905 0.614 1e-147
Q8S230501 Ammonium transporter 2 me no no 0.934 0.876 0.572 1e-147
Q8S233497 Ammonium transporter 2 me no no 0.931 0.881 0.585 1e-146
Q10CV4299 Putative ammonium transpo no no 0.476 0.749 0.552 9e-68
O66515423 Ammonia channel OS=Aquife yes no 0.844 0.938 0.351 7e-58
O26759412 Putative ammonium transpo yes no 0.851 0.970 0.355 3e-57
>sp|Q84KJ6|AMT31_ORYSJ Ammonium transporter 3 member 1 OS=Oryza sativa subsp. japonica GN=AMT3-1 PE=2 SV=1 Back     alignment and function desciption
 Score =  576 bits (1485), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 297/481 (61%), Positives = 357/481 (74%), Gaps = 32/481 (6%)

Query: 1   MSNSSFYLPENLAPDD-ASPGWMNKADNAWQLTAATLVGMQSVPGLVILYGGAVKKKWAV 59
           MS  +F +     P   A P W+NK DNAWQ+ +ATLVGMQSVPGLVILYG  VKKKWAV
Sbjct: 1   MSGDAFNMSVAYQPSGMAVPEWLNKGDNAWQMISATLVGMQSVPGLVILYGSIVKKKWAV 60

Query: 60  NSAFMALYAFACVLVCWVLWGYRMSFGTERYIAFWGAPNVSLGENYLLQKAFLGK----- 114
           NSAFMALYAFA V +CWV WGY MSFG  + + FWG    +LG+++LL +A L +     
Sbjct: 61  NSAFMALYAFAAVWLCWVTWGYNMSFG-HKLLPFWGKARPALGQSFLLAQAVLPQTTQFY 119

Query: 115 ------------------FPNATMVYFQFVFAAITLILIAGAVLGRMNFYAWMMFVPLWL 156
                             +P ATMVYFQ VFAAITLIL+AG++LGRMN  AWM+FVPLWL
Sbjct: 120 KGGGGADAVVETPWVNPLYPMATMVYFQCVFAAITLILLAGSLLGRMNIKAWMLFVPLWL 179

Query: 157 TFSYTIGAFSIWCPDGWLSKLGLLDYSGGYVIHLSSGVAGYTAAFWVGPRLTRDRERFPP 216
           TFSYT+GAFS+W   G+L   G++DYSGGYVIHLSSGVAG+TAA+WVGPR T+DRERFPP
Sbjct: 180 TFSYTVGAFSLWG-GGFLFHWGVMDYSGGYVIHLSSGVAGFTAAYWVGPRSTKDRERFPP 238

Query: 217 NNILLMLAGAGLLWMGWTGFNGGDPYVISTDASLAVLNTHVCTATSLITWLLLDRIFFGK 276
           NN+LLML GAG+LWMGW GFNGGDPY  + D+SLAVLNT++C ATSL+ W  LD IFF K
Sbjct: 239 NNVLLMLTGAGILWMGWAGFNGGDPYSANIDSSLAVLNTNICAATSLLVWTCLDVIFFKK 298

Query: 277 TSVIGAVQGMITGLVCITPAAGIVQGWAAIIMGLCSGSIPWFTMMVVHKRSAMLQKVDDT 336
            SVIGAVQGMITGLVCITP AG+VQGWAAI+MG+ SGSIPWFTMMVVHKRS +LQ+VDDT
Sbjct: 299 PSVIGAVQGMITGLVCITPGAGLVQGWAAIVMGILSGSIPWFTMMVVHKRSRLLQQVDDT 358

Query: 337 MAVLHTHAVAGSLGGLLTGVFAEPKLNYLFYGYYAQYVGLFYGFDMGKVATGFRQIGIQL 396
           + V HTHAVAG LGG  TG+FAEP L  LF        G FY    G +     Q   Q+
Sbjct: 359 LGVFHTHAVAGFLGGATTGLFAEPVLCSLFLP-VTNSRGAFYPGRGGGL-----QFVRQV 412

Query: 397 LGILFVVALNITTTSLICLFIRILVPLRMSEEDMEIGDEAAHGEEAYAIWGEGDGSENSR 456
            G LF++  N+  TSL+CL +R +VPLRM EE++ IGD+A HGEEAYA+WG+G+  ++++
Sbjct: 413 AGALFIICWNVVVTSLVCLAVRAVVPLRMPEEELAIGDDAVHGEEAYALWGDGEKYDSTK 472

Query: 457 Y 457
           +
Sbjct: 473 H 473
Involved in ammonium transport.
Oryza sativa subsp. japonica (taxid: 39947)
>sp|Q69T29|AMT33_ORYSJ Ammonium transporter 3 member 3 OS=Oryza sativa subsp. japonica GN=AMT3-3 PE=2 SV=1 Back     alignment and function description
>sp|Q851M9|AMT32_ORYSJ Ammonium transporter 3 member 2 OS=Oryza sativa subsp. japonica GN=AMT3-2 PE=2 SV=1 Back     alignment and function description
>sp|Q84KJ7|AMT21_ORYSJ Ammonium transporter 2 member 1 OS=Oryza sativa subsp. japonica GN=AMT2-1 PE=2 SV=1 Back     alignment and function description
>sp|Q9M6N7|AMT2_ARATH Ammonium transporter 2 OS=Arabidopsis thaliana GN=AMT2 PE=1 SV=2 Back     alignment and function description
>sp|Q8S230|AMT22_ORYSJ Ammonium transporter 2 member 2 OS=Oryza sativa subsp. japonica GN=AMT2-2 PE=2 SV=2 Back     alignment and function description
>sp|Q8S233|AMT23_ORYSJ Ammonium transporter 2 member 3 OS=Oryza sativa subsp. japonica GN=AMT2-3 PE=2 SV=1 Back     alignment and function description
>sp|Q10CV4|AMT41_ORYSJ Putative ammonium transporter 4 member 1 OS=Oryza sativa subsp. japonica GN=AMT4-1 PE=2 SV=1 Back     alignment and function description
>sp|O66515|AMT_AQUAE Ammonia channel OS=Aquifex aeolicus (strain VF5) GN=amt PE=1 SV=1 Back     alignment and function description
>sp|O26759|Y663_METTH Putative ammonium transporter MTH_663 OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=MTH_663 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query470
225430212482 PREDICTED: ammonium transporter 3 member 0.991 0.966 0.777 0.0
147856666482 hypothetical protein VITISV_020759 [Viti 0.991 0.966 0.775 0.0
255548990492 ammonium transporter, putative [Ricinus 0.985 0.941 0.765 0.0
296082001485 unnamed protein product [Vitis vinifera] 0.955 0.925 0.762 0.0
224141843439 ammonium transporter [Populus trichocarp 0.931 0.997 0.797 0.0
449442194476 PREDICTED: ammonium transporter 3 member 0.997 0.985 0.765 0.0
449499370476 PREDICTED: LOW QUALITY PROTEIN: ammonium 0.997 0.985 0.763 0.0
232782268485 high affinity ammonium transporter [Lotu 0.978 0.948 0.771 0.0
356530231482 PREDICTED: ammonium transporter 3 member 0.978 0.954 0.765 0.0
225437174472 PREDICTED: ammonium transporter 3 member 0.961 0.957 0.753 0.0
>gi|225430212|ref|XP_002282475.1| PREDICTED: ammonium transporter 3 member 1-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  764 bits (1972), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/480 (77%), Positives = 423/480 (88%), Gaps = 14/480 (2%)

Query: 1   MSNSSFYLPENLAPDDASPGWMNKADNAWQLTAATLVGMQSVPGLVILYGGAVKKKWAVN 60
           M+++SF  P NL PD+ASP WMNK DNAWQLTAATLVG+Q+VPGL+ILYGGAVKKKWAVN
Sbjct: 1   MADTSF--PPNLLPDEASPEWMNKGDNAWQLTAATLVGLQTVPGLIILYGGAVKKKWAVN 58

Query: 61  SAFMALYAFACVLVCWVLWGYRMSFGTERYIAFWGAPNVSLGENYLLQKAFLGKFPNATM 120
           SAFMA YAFACVL+CWV WGYRMSFGT + + FWG  NV+L + YLL  AF+GKFP ATM
Sbjct: 59  SAFMAFYAFACVLICWVGWGYRMSFGT-KLVPFWGRANVALDQVYLLDPAFIGKFPQATM 117

Query: 121 VYFQFVFAAITLILIAGAVLGRMNFYAWMMFVPLWLTFSYTIGAFSIWCPDGWLSKLGLL 180
           V+FQFVFAAIT++LIAGA+LGRMNFYAWM+FVPLWLTFSYT  AFSIWCP G+L+K G++
Sbjct: 118 VFFQFVFAAITVVLIAGALLGRMNFYAWMLFVPLWLTFSYTFVAFSIWCPSGFLAKAGII 177

Query: 181 DYSGGYVIHLSSGVAGYTAAFWVGPRLTRDRERFPPNNILLMLAGAGLLWMGWTGFNGGD 240
           DYSGGYVIHLSSGVAG+TAA+WVGPRLT+DRERFPPNNILLM+AGAGLLWMGWTGFNGGD
Sbjct: 178 DYSGGYVIHLSSGVAGFTAAYWVGPRLTKDRERFPPNNILLMMAGAGLLWMGWTGFNGGD 237

Query: 241 PYVISTDASLAVLNTHVCTATSLITWLLLDRIFFGKTSVIGAVQGMITGLVCITPAAGIV 300
           PYV+S DASLAVLNTHVCTATSL+TWL+LD   FGK S+IGAVQGMITGLVCITPAAG+V
Sbjct: 238 PYVVSVDASLAVLNTHVCTATSLLTWLILDIAVFGKASIIGAVQGMITGLVCITPAAGVV 297

Query: 301 QGWAAIIMGLCSGSIPWFTMMVVHKRSAMLQKVDDTMAVLHTHAVAGSLGGLLTGVFAEP 360
           QGWAAIIMG+ SGSIPWFTMMVVHK+S +LQKVDDTMAVLHTHA+AGSLGG+LTG+FA P
Sbjct: 298 QGWAAIIMGIFSGSIPWFTMMVVHKKSELLQKVDDTMAVLHTHAIAGSLGGILTGLFASP 357

Query: 361 KLNYLFYGY----YAQYVGLFYGFDMGKVATGFRQIGIQLLGILFVVALNITTTSLICLF 416
           KLN LFYGY     + YVGLFYG  MG+V+ GFRQIGIQLLGI+FV+  N+  TSLICL 
Sbjct: 358 KLNRLFYGYGVDVDSTYVGLFYGLHMGEVSKGFRQIGIQLLGIVFVLVFNVIATSLICLV 417

Query: 417 IRILVPLRMSEEDMEIGDEAAHGEEAYAIWGEGDGSENSRY------DVELPVSTKNRAA 470
           ++++VPLRMS+EDMEIGDEAAHGEEAYAIWG+GD  ENSRY      DVELP+  K R A
Sbjct: 418 VQLIVPLRMSDEDMEIGDEAAHGEEAYAIWGQGDKLENSRYGSSVYGDVELPMP-KPRGA 476

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147856666|emb|CAN80314.1| hypothetical protein VITISV_020759 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255548990|ref|XP_002515551.1| ammonium transporter, putative [Ricinus communis] gi|223545495|gb|EEF47000.1| ammonium transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|296082001|emb|CBI21006.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224141843|ref|XP_002324271.1| ammonium transporter [Populus trichocarpa] gi|222865705|gb|EEF02836.1| ammonium transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449442194|ref|XP_004138867.1| PREDICTED: ammonium transporter 3 member 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449499370|ref|XP_004160797.1| PREDICTED: LOW QUALITY PROTEIN: ammonium transporter 3 member 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|232782268|gb|ACQ91094.1| high affinity ammonium transporter [Lotus japonicus] Back     alignment and taxonomy information
>gi|356530231|ref|XP_003533686.1| PREDICTED: ammonium transporter 3 member 1-like [Glycine max] Back     alignment and taxonomy information
>gi|225437174|ref|XP_002274875.1| PREDICTED: ammonium transporter 3 member 1 [Vitis vinifera] gi|296084499|emb|CBI25058.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query470
UNIPROTKB|Q84KJ7486 AMT2-1 "Ammonium transporter 2 0.921 0.890 0.586 9.2e-139
TAIR|locus:2042917475 AMT2 "ammonium transporter 2" 0.914 0.905 0.582 5.8e-137
TIGR_CMR|CPS_3995445 CPS_3995 "ammonium transporter 0.865 0.914 0.341 2.7e-59
TIGR_CMR|GSU_0940489 GSU_0940 "ammonium transporter 0.748 0.719 0.341 2.6e-51
TIGR_CMR|SPO_2093431 SPO_2093 "ammonium transporter 0.746 0.814 0.336 2.6e-49
UNIPROTKB|P69681428 amtB "AmtB" [Escherichia coli 0.857 0.941 0.313 5.2e-49
POMBASE|SPCPB1C11.01497 amt1 "ammonium transporter Amt 0.863 0.816 0.301 5.2e-49
SGD|S000005086499 MEP2 "Ammonium permease involv 0.863 0.813 0.308 6.7e-49
CGD|CAL0000712480 MEP2 [Candida albicans (taxid: 0.887 0.868 0.327 6e-48
UNIPROTKB|Q59UP8480 MEP2 "Putative uncharacterized 0.887 0.868 0.327 6e-48
UNIPROTKB|Q84KJ7 AMT2-1 "Ammonium transporter 2 member 1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
 Score = 1358 (483.1 bits), Expect = 9.2e-139, P = 9.2e-139
 Identities = 267/455 (58%), Positives = 334/455 (73%)

Query:    17 ASPGWMNKADNAWQLTAATLVGMQSVPGLVILYGGAVKKKWAVNSAFMALYAFACVLVCW 76
             A P W+NK DNAWQLTA+TLVG+QS+PGLV+LYG  VKKKWAVNSAFMALYA+A  L+ W
Sbjct:    13 AVPDWLNKGDNAWQLTASTLVGIQSMPGLVVLYGSIVKKKWAVNSAFMALYAYASSLLVW 72

Query:    77 VLWGYRMSFGTERYIAFWGAPNVSLGENYLLQKAFL-----GK-------FPNATMVYFQ 124
             VL G+RM+FG ++ + FWG   V+L ++YL+ +A L     G        +P AT+V FQ
Sbjct:    73 VLVGFRMAFG-DQLLPFWGKAGVALTQSYLVGRATLPATAHGAIPRTEPFYPEATLVLFQ 131

Query:   125 FVFAAITLILIAGAVLGRMNFYAWMMFVPLWLTFSYTIGAFSIWCPDGWLSKLGLLDYSG 184
             F FAAITL+L+AG+VLGRMN  AWM F PLWL  SYT+GAFS+W   G+L + G++DYSG
Sbjct:   132 FEFAAITLVLLAGSVLGRMNIKAWMAFTPLWLLLSYTVGAFSLW-GGGFLYRWGVIDYSG 190

Query:   185 GYVIHLSSGVAGYTAAFWVGPRLTRDRERFPPNNIXXXXXXXXXXXXXXTGFNGGDPYVI 244
             GYVIHLSSG+AG+TAA+WVGPRL  DRERF PNNI               GFNGG PY  
Sbjct:   191 GYVIHLSSGIAGFTAAYWVGPRLKSDRERFSPNNILLMIAGGGLLWMGWAGFNGGAPYAA 250

Query:   245 STDASLAVLNTHVCTATSLITWLLLDRIFFGKTSVIGAVQGMITGLVCITPAAGIVQGWA 304
             +  AS+AVLNT+VC ATSL+ W  LD IFF K SVIGAVQGM+TGLVCITP AG+VQ WA
Sbjct:   251 NIAASVAVLNTNVCAATSLLMWTCLDVIFFRKPSVIGAVQGMMTGLVCITPGAGLVQTWA 310

Query:   305 AIIMGLCSGSIPWFTMMVVHKRSAMLQKVDDTMAVLHTHAVAGSLGGLLTGVFAEPKLNY 364
             A++MG+ +GS+PWFTMM++HK+SA+L KVDDT+AV HTHAVAG LGG+LTG+ A P+L +
Sbjct:   311 AVVMGIFAGSVPWFTMMILHKKSALLMKVDDTLAVFHTHAVAGLLGGILTGLLATPEL-F 369

Query:   365 LFYGYYAQYVGLFYGFDMGKVATGFRQIGIQLLGILFVVALNITTTSLICLFIRILVPLR 424
                       G FYG   G    G +QIG QL G  FV+A N+  T+ I L I + +PLR
Sbjct:   370 SLESTVPGLRGAFYG---G----GIKQIGKQLGGAAFVIAWNLVVTTAILLGIGLFIPLR 422

Query:   425 MSEEDMEIGDEAAHGEEAYAIWGEGDGSENSRYDV 459
             M +E + IGD+AAHGEEAYA+WG+G+  + +R+D+
Sbjct:   423 MPDEQLMIGDDAAHGEEAYALWGDGEKFDATRHDL 457
GO:0005886 "plasma membrane" evidence=TAS
GO:0015696 "ammonium transport" evidence=IGI
TAIR|locus:2042917 AMT2 "ammonium transporter 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_3995 CPS_3995 "ammonium transporter" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_0940 GSU_0940 "ammonium transporter" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_2093 SPO_2093 "ammonium transporter" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
UNIPROTKB|P69681 amtB "AmtB" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
POMBASE|SPCPB1C11.01 amt1 "ammonium transporter Amt1" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
SGD|S000005086 MEP2 "Ammonium permease involved in regulation of pseudohyphal growth" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
CGD|CAL0000712 MEP2 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q59UP8 MEP2 "Putative uncharacterized protein MEP2" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9M6N7AMT2_ARATHNo assigned EC number0.61430.91480.9052yesno
Q9C0V1AMT1_SCHPONo assigned EC number0.31710.84890.8028yesno
Q9BLG4AMT1_DICDINo assigned EC number0.30040.84680.8596yesno
P63520AMT_MYCBONo assigned EC number0.31520.91910.9056yesno
Q07429NRGA_BACSUNo assigned EC number0.33560.84890.9876yesno
O66515AMT_AQUAENo assigned EC number0.35180.84460.9385yesno
P41948MEP2_YEASTNo assigned EC number0.31350.86590.8156yesno
P63519AMT_MYCTUNo assigned EC number0.31520.91910.9056yesno
Q84KJ6AMT31_ORYSJNo assigned EC number0.61740.95530.9016yesno
O26759Y663_METTHNo assigned EC number0.35590.85100.9708yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00032606001
SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (468 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00028171001
SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (198 aa)
•     • 0.743
GSVIVG00038598001
SubName- Full=Chromosome chr3 scaffold_95, whole genome shotgun sequence (Chromosome chr16 scaf [...] (79 aa)
•     • 0.624
GSVIVG00007383001
SubName- Full=Chromosome chr3 scaffold_95, whole genome shotgun sequence (Chromosome chr16 scaf [...] (79 aa)
•     • 0.624
GSVIVG00035063001
SubName- Full=Chromosome chr1 scaffold_75, whole genome shotgun sequence; (127 aa)
      • 0.409

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query470
TIGR00836403 TIGR00836, amt, ammonium transporter 1e-115
COG0004409 COG0004, AmtB, Ammonia permease [Inorganic ion tra 1e-108
pfam00909399 pfam00909, Ammonium_transp, Ammonium Transporter F 3e-70
PRK10666428 PRK10666, PRK10666, ammonium transporter; Provisio 7e-69
TIGR03644404 TIGR03644, marine_trans_1, probable ammonium trans 4e-29
>gnl|CDD|233145 TIGR00836, amt, ammonium transporter Back     alignment and domain information 
 Score =  344 bits (885), Expect = e-115
 Identities = 157/422 (37%), Positives = 226/422 (53%), Gaps = 24/422 (5%)

Query: 27  NAWQLTAATLVGMQSVPGLVILYGGAVKKKWAVNSAFMALYAFACVLVCWVLWGYRMSFG 86
            AW L AA LV     PG  +LY G V+ K  +N     L  FA   + W L+GY ++FG
Sbjct: 1   TAWLLIAAALVFFM-QPGFALLYAGLVRSKNVLNIMMKNLLDFAIGSLLWWLFGYSLAFG 59

Query: 87  TERYI-AFWGAPNVSL-GENYLLQKAFLGKFPNATMVYFQFVFAAITLILIAGAVLGRMN 144
            +  I  F G     L    Y  + +  G  P+     FQ +FAAI   +I+GAV  RM 
Sbjct: 60  EDNPINGFIGTGGFGLKNFLYPGKISLAGTLPDLLFFLFQMMFAAIAATIISGAVAERMK 119

Query: 145 FYAWMMFVPLWLTFSYTIGAFSIWCPDGWLSKLGLLDYSGGYVIHLSSGVAGYTAAFWVG 204
           F A+++F  LW T  Y   A  +W   GWL KLG+LD++GG V+H+  GVAG  AA  +G
Sbjct: 120 FSAYLLFSVLWTTLVYPPVAHWVWGGGGWLYKLGVLDFAGGGVVHIVGGVAGLAAALVLG 179

Query: 205 PRLTRDRE--RFPPNNILLMLAGAGLLWMGWTGFNGGDPYVISTDASLAVLNTHVCTATS 262
           PR+ R        P+N+ L++ G  +LW GW GFN G     +  A+ A +NT++  A  
Sbjct: 180 PRIGRFPRPVAIRPHNVPLVVLGTFILWFGWFGFNAGSALAANGTAAYAAVNTNLAAAAG 239

Query: 263 LITWLLLDRIFFGKTSVIGAVQGMITGLVCITPAAGIVQGWAAIIMGLCSGSIPWFTMMV 322
            +TWLL+D +  GK +++GA  G++ GLV ITP  G+V  W AII+GL +G + +  +  
Sbjct: 240 GLTWLLIDWLKHGKPTLLGACNGILAGLVAITPGCGVVTPWGAIIIGLVAGVLCYLAVSK 299

Query: 323 VHKRSAMLQKVDDTMAVLHTHAVAGSLGGLLTGVFAEPKLNYLFYGYYAQYVGLFYGFDM 382
           + K+     K+DD +     H V G  G + TG+FA PK+  +  G      GL  G   
Sbjct: 300 LKKKL----KIDDPLDAFAVHGVGGIWGLIATGLFAAPKVGGVGTG------GLLGG--- 346

Query: 383 GKVATGFRQIGIQLLGILFVVALNITTTSLICLFIRILVPLRMSEEDMEIG-DEAAHGEE 441
                  +Q+G+QL+GI  ++A     T +I   +   + LR+SEE+ +IG D A HGE 
Sbjct: 347 -----NGKQLGVQLIGIAAIIAWAFVVTFIILKILDKTIGLRVSEEEEKIGLDLAEHGEF 401

Query: 442 AY 443
           AY
Sbjct: 402 AY 403

The Ammonium Transporter (Amt) Family (TC 2.A.49) All functionally characterized members of the Amt family are ammonia or ammonium uptake transporters. Some, but not others, also transport methylammonium. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf [Transport and binding proteins, Cations and iron carrying compounds]. Length = 403
>gnl|CDD|223083 COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|216185 pfam00909, Ammonium_transp, Ammonium Transporter Family Back     alignment and domain information
>gnl|CDD|182630 PRK10666, PRK10666, ammonium transporter; Provisional Back     alignment and domain information
>gnl|CDD|234292 TIGR03644, marine_trans_1, probable ammonium transporter, marine subtype Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 470
COG0004409 AmtB Ammonia permease [Inorganic ion transport and 100.0
KOG0682500 consensus Ammonia permease [Inorganic ion transpor 100.0
PRK10666428 ammonium transporter; Provisional 100.0
TIGR00836403 amt ammonium transporter. The mechanism of energy 100.0
TIGR03644404 marine_trans_1 probable ammonium transporter, mari 100.0
PF00909399 Ammonium_transp: Ammonium Transporter Family; Inte 100.0
KOG3796442 consensus Ammonium transporter RHBG [Intracellular 100.0
>COG0004 AmtB Ammonia permease [Inorganic ion transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.4e-108  Score=839.71  Aligned_cols=404  Identities=39%  Similarity=0.721  Sum_probs=376.7

Q ss_pred             ccchhhHHHHHHHHHHHHHhHHHHHhhhhcccccccHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCccccCCcccc
Q 044092           22 MNKADNAWQLTAATLVGMQSVPGLVILYGGAVKKKWAVNSAFMALYAFACVLVCWVLWGYRMSFGTERYIAFWGAPNVSL  101 (470)
Q Consensus        22 ~~~~d~~w~l~~~~lV~~~m~~Gf~lle~G~vr~kn~~~~l~~~~~~~~i~~i~~~~~Gy~lafg~~~~~~fiG~~~~~~  101 (470)
                      +|+.|+.|+|+|++|| ++|||||+|+|+|++|+||+.|+++|++++++++++.|+++||+++||+ +.++|+|+...++
T Consensus         1 ~~~~d~~wml~sa~LV-~lMtpGlalfy~Gl~R~Kn~ln~~m~~~~~~~i~~~~w~~~Gyslafg~-~~~~~iG~~~~~~   78 (409)
T COG0004           1 MDSGDTAWMLLSAALV-LLMTPGLALFYGGLVRKKNVLNTLMQSFVAFAIVTLLWIFVGYSLAFGP-DGNGFIGNLDQFF   78 (409)
T ss_pred             CCcccHHHHHHHHHHH-HHHhhHHHHHHhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhheecC-CCCcccCCHHHHh
Confidence            4788999999999999 9999999999999999999999999999999999999999999999997 5678999876544


Q ss_pred             cchhhhhcccC-CCCccchhhhhhhHHHHHHHHHHHhHhhcccchhHHHHHHHHHHHhhhcceeeeeEcCCcccccCCce
Q 044092          102 GENYLLQKAFL-GKFPNATMVYFQFVFAAITLILIAGAVLGRMNFYAWMMFVPLWLTFSYTIGAFSIWCPDGWLSKLGLL  180 (470)
Q Consensus       102 ~~~~~~~~~~~-~~~~~~~~~~fq~~Fa~~a~~IvsGavaeR~~~~~~~i~~~l~~~~vYp~~~hwvW~~~GwL~~lG~~  180 (470)
                      ..+...++... .++|+..+++||++||++|++|++|+++||+|+++|++|+++|.+++|||.+||+|+++|||.++|++
T Consensus        79 ~~~~~~~~~~~~~~ip~~~f~~FQ~~FAait~alisGa~AER~kf~a~lvf~~lw~~~vY~p~ahWvWggggwl~~~g~~  158 (409)
T COG0004          79 LNGLGFAAVAGGAGIPELVFFAFQMMFAAITPALISGAVAERMKFSAYLLFSVLWSTLVYPPVAHWVWGGGGWLALLGAL  158 (409)
T ss_pred             ccCccccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhheeEecCchHHHhcCce
Confidence            33332222211 36899999999999999999999999999999999999999999999999999999998999999999


Q ss_pred             ecCCCeehhhhhHHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHHHHHHHhhhhcccccccccCccchhhHHHHHHHHH
Q 044092          181 DYSGGYVIHLSSGVAGYTAAFWVGPRLTRDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYVISTDASLAVLNTHVCTA  260 (470)
Q Consensus       181 DfaG~~vVH~~gG~~gL~~a~~lG~R~g~~~~~~~~~s~~~~~lG~~lLw~GW~gFN~gs~~~~~~~~~~a~~NT~la~a  260 (470)
                      |||||+|||..+|+.||+++++||||+++.++++||||++++++|+.|||+||||||+||++..+.++..+++||++|++
T Consensus       159 DFAGgtVVHi~aG~aaLa~a~~lG~R~g~~~~~~~pHNl~~~~lGa~lLWfGWfGFN~GSal~~~~~a~~a~~nT~lAaa  238 (409)
T COG0004         159 DFAGGTVVHINAGFAALAAALVLGKRIGGKPVAIPPHNLPLVVLGAALLWFGWFGFNAGSALAANGVAALAFVNTNLAAA  238 (409)
T ss_pred             ecCCCceEEechhHHHHHHHHHeecccCCCCCCCCCCchhHHHHHHHHHHHHHccCCccchhhhhhhHHHHHHHHHHHHH
Confidence            99999999999999999999999999998889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCcHhhhhhhhhhcceeecCCCCccchHHHHHHHHhhhhHHHHHHHHHHhhhccccccccccCcc
Q 044092          261 TSLITWLLLDRIFFGKTSVIGAVQGMITGLVCITPAAGIVQGWAAIIMGLCSGSIPWFTMMVVHKRSAMLQKVDDTMAVL  340 (470)
Q Consensus       261 ~g~l~~~~~~~~~~~k~~~~~~~nG~LaGlVaIta~~~~v~p~~A~iiG~iag~i~~~~~~~l~~~~~~~~~IDD~~~~~  340 (470)
                      +++++|++++|+++||+|+..++||++||||+|||+|++|+||+|++||+++|++|++++++++||    +|+|||+|++
T Consensus       239 ~g~l~w~~~e~~~~~Kp~~lg~~sG~vAGLVaITpaag~V~p~~A~iiGii~g~i~~~a~~~lk~~----l~~DD~ld~f  314 (409)
T COG0004         239 AGALGWMLIEWLRNGKPSLLGAASGAVAGLVAITPAAGFVSPWGALIIGLIAGVICYFAVKLLKKK----LGVDDALDVF  314 (409)
T ss_pred             HHHHHHHHHHHHHcCCCchhhhhhHHHhHHHhcCCcccccCcHHHHHHHHHHHHHHHHHHHHHHHh----cCCCCcccce
Confidence            999999999999999999999999999999999999999999999999999999999999998886    8999999999


Q ss_pred             ccccchhhhhhhhhhhccccccchhhccccccccceeecccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044092          341 HTHAVAGSLGGLLTGVFAEPKLNYLFYGYYAQYVGLFYGFDMGKVATGFRQIGIQLLGILFVVALNITTTSLICLFIRIL  420 (470)
Q Consensus       341 ~vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~~~Gl~~gg~~~~~~~~~~ql~~Ql~g~~v~~~~s~~~~~ii~~il~~~  420 (470)
                      ++||++|+||++++|+|++++..        ...|.+|+        +.+|++.|+.+++++.+|+++.++++++++|++
T Consensus       315 ~vHGvgGi~G~i~~GiFa~~~~~--------~~~G~~~~--------~~~~l~~Q~~~v~~~~~~~~v~t~ii~~vl~~~  378 (409)
T COG0004         315 GVHGVGGIVGAILTGIFAAPAVG--------GGGGLFYG--------GGVQLGVQLLGVLVTIVYAFVVTFIILKVLKLI  378 (409)
T ss_pred             eccchhhHHHHHHHHHhcCcccc--------ccCccccc--------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999998641        22355552        459999999999999999999999999999999


Q ss_pred             cCCCCChHHHhcc-Chhhhchhhhhccc
Q 044092          421 VPLRMSEEDMEIG-DEAAHGEEAYAIWG  447 (470)
Q Consensus       421 ~~LRv~~e~E~~G-D~~~hg~~ay~~~~  447 (470)
                      .+||+|||||++| |.+||||++|++..
T Consensus       379 ~gLRvs~eeE~~GlD~~~Hge~aY~~~~  406 (409)
T COG0004         379 IGLRVSEEEELEGLDISEHGESAYSEEE  406 (409)
T ss_pred             cCCCCCHHHHhhCCChHHhccccccccc
Confidence            9999999999999 99999999998644

>KOG0682 consensus Ammonia permease [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10666 ammonium transporter; Provisional Back     alignment and domain information
>TIGR00836 amt ammonium transporter Back     alignment and domain information
>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype Back     alignment and domain information
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix Back     alignment and domain information
>KOG3796 consensus Ammonium transporter RHBG [Intracellular trafficking, secretion, and vesicular transport; General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query470
1xqe_A418 The Mechanism Of Ammonia Transport Based On The Cry 6e-48
2nmr_A424 An Unusual Twin-His Arrangement In The Pore Of Ammo 6e-48
2ns1_A412 Crystal Structure Of The E. Coli Ammonia Channel Am 8e-48
2nuu_A415 Regulating The Escherichia Coli Ammonia Channel: Th 2e-47
2now_A424 An Unusual Twin-His Arrangement In The Pore Of Ammo 5e-47
3c1i_A424 Substrate Binding, Deprotonation And Selectivity At 6e-47
3c1h_A424 Substrate Binding, Deprotonation And Selectivity At 6e-47
2npc_A424 An Unusual Twin-His Arrangement In The Pore Of Ammo 8e-47
2npe_A424 An Unusual Twin-his Arrangement In The Pore Of Ammo 8e-47
2npd_A424 An Unusual Twin-His Arrangement In The Pore Of Ammo 8e-47
2npg_A424 An Unusual Twin-His Arrangement In The Pore Of Ammo 8e-47
3c1j_A424 Substrate Binding, Deprotonation And Selectivity At 6e-46
2npk_A424 An Unusual Twin-His Arrangement In The Pore Of Ammo 2e-45
1u77_A385 Crystal Structure Of Ammonia Channel Amtb From E. C 3e-41
2b2f_A399 Ammonium Transporter Amt-1 From A.Fulgidus (Native) 1e-40
>pdb|1XQE|A Chain A, The Mechanism Of Ammonia Transport Based On The Crystal Structure Of Amtb Of E. Coli. Length = 418 Back     alignment and structure 
Iteration: 1

 Score =  188 bits (477), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 143/432 (33%), Positives = 216/432 (50%), Gaps = 34/432 (7%)
Query: 18  SPGWMNKADNAWQLTAATLVGMQSVPGLVILYGGAVKKKWAVNSAFMALYAFACVLVCWV 77
           +P   +KADNA+ +    LV   ++PG+ + YGG ++ K  ++        FA V + WV
Sbjct: 1   APAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWV 60
Query: 78  LWGYRMSFGTERYIAFWGAPNVSLGENYLLQKAFLGKFPNATMVYFQFVFAAITLILIAG 137
           ++GY ++FG      F+G  N  + +N  L  A +G       V FQ  FA IT+ LI G
Sbjct: 61  VYGYSLAFGEGNN--FFGNINWLMLKNIEL-TAVMGSIYQYIHVAFQGSFACITVGLIVG 117
Query: 138 AVLGRMNFYAWMMFVPLWLTFSYTIGAFSIWCPDGWLSKLGLLDYSGGYVIHLSSGVAGY 197
           A+  R+ F A ++FV +WLT SY   A  +W   G L+  G LD++GG V+H+++ +AG 
Sbjct: 118 ALAERIRFSAVLIFVVVWLTLSYIPIAHMVW-GGGLLASHGALDFAGGTVVHINAAIAGL 176
Query: 198 TAAFWVGPRLTRDRERFPPNNIXXXXXXXXXXXXXXTGFNGGDPYVISTDASLAVLNTHV 257
             A+ +G R+   +E F P+N+               GFN G     +  A+LA +NT V
Sbjct: 177 VGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVV 236
Query: 258 CTATSLITWLLLDRIFFGKTSVIGAVQGMITGLVCITPAAGIVQGWAAIIMGLCSG-SIP 316
            TA +++ W+  +    GK S++GA  G I GLV +TPA G +    A+I+G+ +G +  
Sbjct: 237 ATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGL 296
Query: 317 WFTMMVVHKRSAMLQKVDDTMAVLHTHAVAGSLGGLLTGVFAEPKLNYLFYGYYAQYVGL 376
           W   M+  KR   L +VDD   V   H V G +G ++TG+FA   L           VG 
Sbjct: 297 WGVTML--KR---LLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSLG---------GVGF 342
Query: 377 FYGFDMGKVATGFRQIGIQLLGILFVVALNITTTSLICL----FIRILVPLRMSEEDMEI 432
             G  MG           QLL  L  +A+ I  + ++         + V LR+ EE    
Sbjct: 343 AEGVTMGH----------QLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQERE 392
Query: 433 G-DEAAHGEEAY 443
           G D  +HGE AY
Sbjct: 393 GLDVNSHGENAY 404
>pdb|2NMR|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|2NS1|A Chain A, Crystal Structure Of The E. Coli Ammonia Channel Amtb Complexed With The Signal Transduction Protein Glnk Length = 412 Back     alignment and structure
>pdb|2NUU|A Chain A, Regulating The Escherichia Coli Ammonia Channel: The Crystal Structure Of The Amtb-glnk Complex Length = 415 Back     alignment and structure
>pdb|2NOW|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|3C1I|A Chain A, Substrate Binding, Deprotonation And Selectivity At The Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb Length = 424 Back     alignment and structure
>pdb|3C1H|A Chain A, Substrate Binding, Deprotonation And Selectivity At The Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb Length = 424 Back     alignment and structure
>pdb|2NPC|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|2NPE|A Chain A, An Unusual Twin-his Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|2NPD|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|2NPG|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|3C1J|A Chain A, Substrate Binding, Deprotonation And Selectivity At The Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb Length = 424 Back     alignment and structure
>pdb|2NPK|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|1U77|A Chain A, Crystal Structure Of Ammonia Channel Amtb From E. Coli Length = 385 Back     alignment and structure
>pdb|2B2F|A Chain A, Ammonium Transporter Amt-1 From A.Fulgidus (Native) Length = 399 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query470
2b2h_A399 AMT-1, ammonium transporter; membrane protein, tra 1e-104
1u7g_A385 Probable ammonium transporter; right handed helica 1e-100
3b9w_A407 Ammonium transporter family; membrane protein, amm 2e-66
3hd6_A490 Ammonium transporter RH type C; ammonia, channel, 2e-57
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A Length = 399 Back     alignment and structure
 Score =  316 bits (812), Expect = e-104
 Identities = 134/433 (30%), Positives = 209/433 (48%), Gaps = 38/433 (8%)

Query: 22  MNKADNAWQLTAATLVGMQSVPGLVILYGGAVKKKWAVNSAFMALYAFACVLVCWVLWGY 81
           M+  + AW L +  LV M  VPG+   Y G V++K AVN   ++  +    ++ W+ +GY
Sbjct: 1   MSDGNVAWILASTALV-MLMVPGVGFFYAGMVRRKNAVNMIALSFISLIITVLLWIFYGY 59

Query: 82  RMSFGTERYIAFWGAPNVSLGENYLLQKAFLG--KFPNATMVYFQFVFAAITLILIAGAV 139
            +SFG +      G           L  A L   K  +   + +Q +FAA+T+ ++  A+
Sbjct: 60  SVSFGNDIS-GIIGG----------LNYALLSGVKGEDLLFMMYQMMFAAVTIAILTSAI 108

Query: 140 LGRMNFYAWMMFVPLWLTFSYTIGAFSIWCPDGWLSKLGLLDYSGGYVIHLSSGVAGYTA 199
             R    ++++   LWLTF Y   A  +W   GWL+KLG LD++GG V+H+SSG A    
Sbjct: 109 AERAKVSSFILLSALWLTFVYAPFAHWLW-GGGWLAKLGALDFAGGMVVHISSGFAALAV 167

Query: 200 AFWVGPRLTRDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYVISTDASLAVLNTHVCT 259
           A  +G R   +     P++I L L GA LLW GW GFNGG     +  A  AV+ T+   
Sbjct: 168 AMTIGKRAGFEEYSIEPHSIPLTLIGAALLWFGWFGFNGGSALAANDVAINAVVVTNTSA 227

Query: 260 ATSLITWLLLDRIFFGKTSVIGAVQGMITGLVCITPAAGIVQGWAAIIMGLCSGSIPWFT 319
           A +   W+++  I  GK   +G V G I GL  ITPAAG V    AI++GL +G + +  
Sbjct: 228 AVAGFVWMVIGWI-KGKPGSLGIVSGAIAGLAAITPAAGFVDVKGAIVIGLVAGIVCYLA 286

Query: 320 MMVVHKRSAMLQKVDDTMAVLHTHAVAGSLGGLLTGVFAEPKLNYLFYGYYAQYVGLFYG 379
           M    K+     K+D+++     H + G  G +  G+ A P++N         Y GL +G
Sbjct: 287 MDFRIKK-----KIDESLDAWAIHGIGGLWGSVAVGILANPEVN--------GYAGLLFG 333

Query: 380 FDMGKVATGFRQIGIQLLGILFVVALNITTTSLICLFIRILVPLRMSEEDMEIG-DEAAH 438
                     + +  QL+ +    A     T ++   +   V LR+S ++  +G D + H
Sbjct: 334 --------NPQLLVSQLIAVASTTAYAFLVTLILAKAVDAAVGLRVSSQEEYVGLDLSQH 385

Query: 439 GEEAYAIWGEGDG 451
            E AY +      
Sbjct: 386 EEVAYTLEHHHHH 398
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A Length = 385 Back     alignment and structure
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A* Length = 407 Back     alignment and structure
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens} Length = 490 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query470
2b2h_A399 AMT-1, ammonium transporter; membrane protein, tra 100.0
1u7g_A385 Probable ammonium transporter; right handed helica 100.0
3b9w_A407 Ammonium transporter family; membrane protein, amm 100.0
3hd6_A490 Ammonium transporter RH type C; ammonia, channel, 100.0
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A Back     alignment and structure
Probab=100.00  E-value=2.5e-107  Score=841.36  Aligned_cols=394  Identities=33%  Similarity=0.622  Sum_probs=362.3

Q ss_pred             ccchhhHHHHHHHHHHHHHhHHHHHhhhhcccccccHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCccccCCcccc
Q 044092           22 MNKADNAWQLTAATLVGMQSVPGLVILYGGAVKKKWAVNSAFMALYAFACVLVCWVLWGYRMSFGTERYIAFWGAPNVSL  101 (470)
Q Consensus        22 ~~~~d~~w~l~~~~lV~~~m~~Gf~lle~G~vr~kn~~~~l~~~~~~~~i~~i~~~~~Gy~lafg~~~~~~fiG~~~~~~  101 (470)
                      +|+.|+.|+|+|++|| ++|||||+++|+|++|+||++|+++||++++++++++||++||+++||+ +.++|+|+.++++
T Consensus         1 ~~~~d~~w~l~~~~LV-~~M~~Gfa~~~~G~vR~KN~~n~l~k~~~~~~i~~i~w~~~Gy~lafg~-~~~~~iG~~~~~~   78 (399)
T 2b2h_A            1 MSDGNVAWILASTALV-MLMVPGVGFFYAGMVRRKNAVNMIALSFISLIITVLLWIFYGYSVSFGN-DISGIIGGLNYAL   78 (399)
T ss_dssp             CCHHHHHHHHHHHHHH-HHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHTHHHHHHSS-EETTTEECSTTGG
T ss_pred             CCcccHHHHHHHHHHH-HHHHHHHHHHhcccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCcCCchHhh
Confidence            4678999999999999 9999999999999999999999999999999999999999999999997 4467999854433


Q ss_pred             cchhhhhcccCCCCccchhhhhhhHHHHHHHHHHHhHhhcccchhHHHHHHHHHHHhhhcceeeeeEcCCcccccCCcee
Q 044092          102 GENYLLQKAFLGKFPNATMVYFQFVFAAITLILIAGAVLGRMNFYAWMMFVPLWLTFSYTIGAFSIWCPDGWLSKLGLLD  181 (470)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~fq~~Fa~~a~~IvsGavaeR~~~~~~~i~~~l~~~~vYp~~~hwvW~~~GwL~~lG~~D  181 (470)
                      ..+..        .....+++||++||++|++|++|+++||+|+.+|++|+++|++++|||++||+|+ +|||.++|++|
T Consensus        79 ~~~~~--------~~~~~~~~Fq~~Faa~t~~IvsGAvaeR~kf~a~lif~~l~~~~vY~~~ahwvW~-~GwL~~lG~~D  149 (399)
T 2b2h_A           79 LSGVK--------GEDLLFMMYQMMFAAVTIAILTSAIAERAKVSSFILLSALWLTFVYAPFAHWLWG-GGWLAKLGALD  149 (399)
T ss_dssp             GTTCC--------THHHHHHHHHHHHHHHHHHHHGGGGTTTBCHHHHHHHHHHHHHHTHHHHHHHHHS-SCHHHHTTCCC
T ss_pred             ccCCC--------CCchhHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHhhhhhhheEC-chhHHhcCCcc
Confidence            22210        1125789999999999999999999999999999999999999999999999995 89999999999


Q ss_pred             cCCCeehhhhhHHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHHHHHHHhhhhcccccccccCccchhhHHHHHHHHHH
Q 044092          182 YSGGYVIHLSSGVAGYTAAFWVGPRLTRDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYVISTDASLAVLNTHVCTAT  261 (470)
Q Consensus       182 faG~~vVH~~gG~~gL~~a~~lG~R~g~~~~~~~~~s~~~~~lG~~lLw~GW~gFN~gs~~~~~~~~~~a~~NT~la~a~  261 (470)
                      ||||++||++||++||+++++||||++|+++++||||++++++|+++||+||||||+||++..++.+.++++||++|+++
T Consensus       150 FAGs~vVH~~gG~~aL~~a~~LG~R~g~~~~~~~~hn~~~~~lG~~lLW~GWfGFN~GS~l~~~~~a~~a~~nT~lAaaa  229 (399)
T 2b2h_A          150 FAGGMVVHISSGFAALAVAMTIGKRAGFEEYSIEPHSIPLTLIGAALLWFGWFGFNGGSALAANDVAINAVVVTNTSAAV  229 (399)
T ss_dssp             SSCTTTTHHHHHHHHHHHHHHHCCCTTTTTSCCCCSCHHHHHHHHHHHHHHHHHHHHGGGSSSSHHHHHHHHHHHHHHHH
T ss_pred             ccCCeEEEechhHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcHHhhccccchhhHHHHHHHHHHHH
Confidence            99999999999999999999999999988889999999999999999999999999999998888899999999999999


Q ss_pred             HHHHHHHHHHHHhcCCcHhhhhhhhhhcceeecCCCCccchHHHHHHHHhhhhHHHHHHHHHHhhhccccccccccCccc
Q 044092          262 SLITWLLLDRIFFGKTSVIGAVQGMITGLVCITPAAGIVQGWAAIIMGLCSGSIPWFTMMVVHKRSAMLQKVDDTMAVLH  341 (470)
Q Consensus       262 g~l~~~~~~~~~~~k~~~~~~~nG~LaGlVaIta~~~~v~p~~A~iiG~iag~i~~~~~~~l~~~~~~~~~IDD~~~~~~  341 (470)
                      |+++|+++++++ ||+|+..++||+|||||||||+|++++||+|++||+++|++|+++++ +++|    +|||||||+++
T Consensus       230 g~l~~~~~~~~~-gk~~~~~~~nG~lAGLVaITa~~~~v~p~~A~iiG~iag~i~~~~~~-l~~k----l~iDD~l~a~~  303 (399)
T 2b2h_A          230 AGFVWMVIGWIK-GKPGSLGIVSGAIAGLAAITPAAGFVDVKGAIVIGLVAGIVCYLAMD-FRIK----KKIDESLDAWA  303 (399)
T ss_dssp             HHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHTTTTTTCCHHHHHHHHHHHHHHHHHHHH-HHHH----TTCCCTTCHHH
T ss_pred             HHHHHHHHHHHH-cCCCHHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHH-HHHH----cCCCCCCCcee
Confidence            999999999999 99999999999999999999999999999999999999999999984 4443    89999999999


Q ss_pred             cccchhhhhhhhhhhccccccchhhccccccccceeecccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 044092          342 THAVAGSLGGLLTGVFAEPKLNYLFYGYYAQYVGLFYGFDMGKVATGFRQIGIQLLGILFVVALNITTTSLICLFIRILV  421 (470)
Q Consensus       342 vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~~~Gl~~gg~~~~~~~~~~ql~~Ql~g~~v~~~~s~~~~~ii~~il~~~~  421 (470)
                      +||+||+||++++|+|++++..        +.+|++|+        +.+|++.|++|++++++|+++.++++++++|++.
T Consensus       304 vHgv~Gi~G~l~~glfa~~~~~--------g~~Gl~~g--------~~~ql~~Ql~g~~~~~~~~~v~~~i~~~il~~~~  367 (399)
T 2b2h_A          304 IHGIGGLWGSVAVGILANPEVN--------GYAGLLFG--------NPQLLVSQLIAVASTTAYAFLVTLILAKAVDAAV  367 (399)
T ss_dssp             HHHHHHHHHHHHHHHHCCHHHH--------SCCCGGGT--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccchhhHHHHHHHHHHcccccc--------CCCccccC--------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999986532        23578884        3589999999999999999999999999999999


Q ss_pred             CCCCChHHHhcc-ChhhhchhhhhcccC
Q 044092          422 PLRMSEEDMEIG-DEAAHGEEAYAIWGE  448 (470)
Q Consensus       422 ~LRv~~e~E~~G-D~~~hg~~ay~~~~~  448 (470)
                      +||++||||++| |.+||||++||+.+.
T Consensus       368 glRv~~e~E~~GlD~~~hg~~ay~~~~~  395 (399)
T 2b2h_A          368 GLRVSSQEEYVGLDLSQHEEVAYTLEHH  395 (399)
T ss_dssp             CSBCCHHHHHHCHHHHHHCCCSCC----
T ss_pred             cCCCCHHHHHhCCCHHHhCcccCCcccc
Confidence            999999999999 999999999987543
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A Back     alignment and structure
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A* Back     alignment and structure
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 470
d1u7ga_383 f.44.1.1 (A:) Ammonium transporter AmtB {Escherich 5e-55
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]} Length = 383 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Ammonium transporter
superfamily: Ammonium transporter
family: Ammonium transporter
domain: Ammonium transporter AmtB
species: Escherichia coli [TaxId: 562]

 Score =  186 bits (472), Expect = 5e-55
 Identities = 119/404 (29%), Positives = 196/404 (48%), Gaps = 23/404 (5%)

Query: 22  MNKADNAWQLTAATLVGMQSVPGLVILYGGAVKKKWAVNSAFMALYAFACVLVCWVLWGY 81
            +KADNA+ +    LV   ++PG+ + YGG ++ K  ++        FA V + WV++GY
Sbjct: 3   ADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGY 62

Query: 82  RMSFGTERYIAFWGAPNVSLGENYLLQKAFLGKFPNATMVYFQFVFAAITLILIAGAVLG 141
            ++ G      F     + L    L              V FQ  FA IT+ LI GA+  
Sbjct: 63  SLASGEGNNF-FGNINWLMLKNIELTAVMG--SIYQYIHVAFQGSFACITVGLIVGALAE 119

Query: 142 RMNFYAWMMFVPLWLTFSYTIGAFSIWCPDGWLSKLGLLDYSGGYVIHLSSGVAGYTAAF 201
           R+ F A ++FV +WLT SY      +    G L+  G LD++GG V+H+++ +AG   A+
Sbjct: 120 RIRFPAVLIFVVVWLTLSYIP-IAHMVWGGGLLASHGALDFAGGTVVHINAAIAGLVGAY 178

Query: 202 WVGPRLTRDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYVISTDASLAVLNTHVCTAT 261
            +G R+   +E F P+N+ ++  G  +L++GW GFN G     +  A+LA +NT V TA 
Sbjct: 179 LIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVATAA 238

Query: 262 SLITWLLLDRIFFGKTSVIGAVQGMITGLVCITPAAGIVQGWAAIIMGLCSGSIPWFTMM 321
           +++ W+  +    G  S++GA  G I GLV +TPA G +    A+I+G+ +G    + + 
Sbjct: 239 AILGWIFGEWALRGLPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVT 298

Query: 322 VVHKRSAMLQKVDDTMAVLHTHAVAGSLGGLLTGVFAEPKLNYLFYGYYAQYVGLFYGFD 381
           ++      L +VDD   V   H V G +G ++TG+FA   L  + +              
Sbjct: 299 MLK----RLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSLGGVGFAEG----------- 343

Query: 382 MGKVATGFRQIGIQLLGILFVVALNITTTSLICLFIRILVPLRM 425
                T   Q+ +QL  I   +  +     +      + V LR+
Sbjct: 344 ----VTMGHQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRV 383

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query470
d1u7ga_383 Ammonium transporter AmtB {Escherichia coli [TaxId 100.0
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Ammonium transporter
superfamily: Ammonium transporter
family: Ammonium transporter
domain: Ammonium transporter AmtB
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.7e-92  Score=726.18  Aligned_cols=380  Identities=33%  Similarity=0.577  Sum_probs=348.0

Q ss_pred             ccchhhHHHHHHHHHHHHHhH-HHHHhhhhcccccccHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCccccCCccc
Q 044092           22 MNKADNAWQLTAATLVGMQSV-PGLVILYGGAVKKKWAVNSAFMALYAFACVLVCWVLWGYRMSFGTERYIAFWGAPNVS  100 (470)
Q Consensus        22 ~~~~d~~w~l~~~~lV~~~m~-~Gf~lle~G~vr~kn~~~~l~~~~~~~~i~~i~~~~~Gy~lafg~~~~~~fiG~~~~~  100 (470)
                      -|+.|++|+|+|++|| ++|| |||+++|+|+||+||++|+++||++++++++++||++||+++||+ + ++++|...+.
T Consensus         3 ~d~~d~~~~l~~~~lV-~~m~~~Gf~lle~G~vr~kn~~~~~~k~~~~~~~~~i~~~~~Gy~lafg~-~-~~~~g~~~~~   79 (383)
T d1u7ga_           3 ADKADNAFMMICTALV-LFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLASGE-G-NNFFGNINWL   79 (383)
T ss_dssp             CCHHHHHHHHHHHHHH-HHHHTTHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSS-C-SSSCCCSTTG
T ss_pred             cCcccHHHHHHHHHHH-HHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHheeeEeEEeEcCC-C-CCcCCCcchh
Confidence            3678999999999999 8887 899999999999999999999999999999999999999999997 3 4567776554


Q ss_pred             ccchhhhhcccCCCCccchhhhhhhHHHHHHHHHHHhHhhcccchhHHHHHHHHHHHhhhcceeeeeEcCCcccccCCce
Q 044092          101 LGENYLLQKAFLGKFPNATMVYFQFVFAAITLILIAGAVLGRMNFYAWMMFVPLWLTFSYTIGAFSIWCPDGWLSKLGLL  180 (470)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~fq~~Fa~~a~~IvsGavaeR~~~~~~~i~~~l~~~~vYp~~~hwvW~~~GwL~~lG~~  180 (470)
                      +..+...+ ...+.+|..++++||++||+++++|++|+++||+|+++|++++++|++++|||.+||+| ++|||.++|++
T Consensus        80 ~~~~~~~~-~~~~~~~~~~~~~fq~~Fa~~a~~IvsGavaeR~~~~~~~i~~~~~~~~vy~~~~hwvw-~~g~l~~lG~~  157 (383)
T d1u7ga_          80 MLKNIELT-AVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFPAVLIFVVVWLTLSYIPIAHMVW-GGGLLASHGAL  157 (383)
T ss_dssp             GGTTCCTT-CEETTEEHHHHHHHHHHHHHHHHHHHHHHHGGGBCHHHHHHHHHHHHHHTHHHHHHHHH-SSCHHHHHTCC
T ss_pred             hccCcccc-cccccchhhHHhHhhhhhhhhhccccccccccccceeEeeehhhHhhhhccchHHheec-CCCccccCCce
Confidence            44332211 12345788899999999999999999999999999999999999999999999999999 78999999999


Q ss_pred             ecCCCeehhhhhHHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHHHHHHHhhhhcccccccccCccchhhHHHHHHHHH
Q 044092          181 DYSGGYVIHLSSGVAGYTAAFWVGPRLTRDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYVISTDASLAVLNTHVCTA  260 (470)
Q Consensus       181 DfaG~~vVH~~gG~~gL~~a~~lG~R~g~~~~~~~~~s~~~~~lG~~lLw~GW~gFN~gs~~~~~~~~~~a~~NT~la~a  260 (470)
                      |||||++||++||+++|++++++|||++|++++.+|||++++.+|+++||+||+|||+||+...++...++.+||++|++
T Consensus       158 DfaGs~vVH~~gG~~aL~~~~~lgpR~~~~~~~~~~~~~~~~~lG~~iLw~gW~gFN~gs~~~~~~~~~~~~~nt~~a~a  237 (383)
T d1u7ga_         158 DFAGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVATA  237 (383)
T ss_dssp             CSSCTTTTHHHHHHHHHHHHHHSCCCCCTTCSSCCGGGHHHHHHHHHHHHHHHHHHHHGGGSSSSHHHHHHHHHHHHHHH
T ss_pred             eccCceeeeecccHHHHHHHHhcCCcccccccccccCChhhhhHHHHHHHHHHHHhccccccccchHHHHHHHHHHhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999888888999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCcHhhhhhhhhhcceeecCCCCccchHHHHHHHHhhhhHHHHHHHHHHhhhccccccccccCcc
Q 044092          261 TSLITWLLLDRIFFGKTSVIGAVQGMITGLVCITPAAGIVQGWAAIIMGLCSGSIPWFTMMVVHKRSAMLQKVDDTMAVL  340 (470)
Q Consensus       261 ~g~l~~~~~~~~~~~k~~~~~~~nG~LaGlVaIta~~~~v~p~~A~iiG~iag~i~~~~~~~l~~~~~~~~~IDD~~~~~  340 (470)
                      +++++++..+++.+||+|+.+++||+|||||+|||+|++++||+|++||+++|++|+++.+++++|    +|||||||++
T Consensus       238 ~~~~~~~~~~~~~~~k~~~~~~~nG~LaGLVaita~~~~v~p~~A~~iG~i~g~i~~~~~~~l~~~----~~iDD~~~~~  313 (383)
T d1u7ga_         238 AAILGWIFGEWALRGLPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRL----LRVDDPCDVF  313 (383)
T ss_dssp             HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHH----HCSCCGGGHH
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHhhhhhhhcccCccccchhhHHHHHhhccHHHHHHHHHHHhh----cccccccceE
Confidence            999999999999999999999999999999999999999999999999999999999999988765    8999999999


Q ss_pred             ccccchhhhhhhhhhhccccccchhhccccccccceeecccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044092          341 HTHAVAGSLGGLLTGVFAEPKLNYLFYGYYAQYVGLFYGFDMGKVATGFRQIGIQLLGILFVVALNITTTSLICLFIRIL  420 (470)
Q Consensus       341 ~vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~~~Gl~~gg~~~~~~~~~~ql~~Ql~g~~v~~~~s~~~~~ii~~il~~~  420 (470)
                      ++|++||+||++++|+|++++..           |..+..+.    ...+|+++|++|++++++|+++.++++++++||+
T Consensus       314 ~vHg~~Gi~G~l~~glfa~~~~~-----------g~~~~~~~----~~~~ql~~Ql~g~~v~~~~~~~~~~ii~~il~~~  378 (383)
T d1u7ga_         314 GVHGVCGIVGCIMTGIFAASSLG-----------GVGFAEGV----TMGHQLLVQLESIAITIVWSGVVAFIGYKLADLT  378 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTSGGGT-----------CCCCCTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eehhhhHHHHHHHHHHhcCcccc-----------cccccccc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999987643           22222101    1458999999999999999999999999999999


Q ss_pred             cCCCC
Q 044092          421 VPLRM  425 (470)
Q Consensus       421 ~~LRv  425 (470)
                      .+|||
T Consensus       379 ~gLRV  383 (383)
T d1u7ga_         379 VGLRV  383 (383)
T ss_dssp             TCSBC
T ss_pred             cCCcC
Confidence            99997