Citrus Sinensis ID: 044152

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300
Protein Sequence
TLDVMFSMEAFIISIGRSLDSIVDLTWIICFGVSFGAFSLLAIFISPTSFMYWVNHFQFSNFFYVLVLISEDFDIAFTNKFYHSHLDDMANINSSAAVAAASLIARSLYILASDNNDMHSSVLGAINVNTSLVEELMGCLLSCEPDLHYVGVVVGEPSFKPYLGYVDDVSRFVWNFLADRTSTPKENASSSCSKDCTNEDEHFLPSLNVANHRYVLAYSTRLMFESGTWNVLPPNSSDSMGSVDPVSTESNWNTIGLWVYTIQNGAYDHLILIGGIAVTISAYFMIALARSFITKALKRD
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHccHHHHHccEEEEEEcEEEEcccccccccccccHHHHHHHccccccccEEEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccEEEccccEEEcccccEEEccccccccccccccccccccccccccccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccEEEEHHEEEEEccccHHHHHHHHHHHHHHHcHHHHHHHcccccccHHHHHHHcccccccccccEEEEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccccccccccEEEcccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccEEEccEEEcccEEEEEEEEEEEEccccEEEEcccccccccccccEEEEcccccEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
TLDVMFSMEAFIISIGRSLDSIVDLTWIICFGVSFGAFSLLAIFISPTSFMYWVNHFQFSNFFYVLVLISEDFDIAFTNKFYHSHLDDMANINSSAAVAAASLIARSLYIlasdnndmhsSVLGAINVNTSLVEELMGCLlscepdlhyvgvvvgepsfkpylgyvddVSRFVWNFLadrtstpkenassscskdctnedehflpslnvanHRYVLAYSTRLmfesgtwnvlppnssdsmgsvdpvstesnwnTIGLWVYTIQNGAYDHLILIGGIAVTISAYFMIALARSFITKALKRD
Flexible Loop (DISEMBL)
TLDVMFSMEAFIISIGRSLDSIVDLTWIICFGVSFGAFSLLAIFISPTSFMYWVNHFQFSNFFYVLVLISEDFDIAFTNKFYHSHLDDMANINSSAAVAAASLIARSLYILASDNNDMHSSVLGAINVNTSLVEELMGCLLSCEPDLHYVGVVVGEPSFKPYLGYVDDVSRFVWNFLADrtstpkenassscskDCTNEDEHFLPSLNVANHRYVLAYSTRLMFESGTWNVLPPNSSDSMGSVDPVSTESNWNTIGLWVYTIQNGAYDHLILIGGIAVTISAYFMIALARSFITKALKRD
Low Complexity Region (SEG)
TLDVMFSMEAFIISIGRSLDSIVDLTWIICFGVSFGAFSLLAIFISPTSFMYWVNHFQFSNFFYVLVLISEDFDIAFTNKFYHSHLDDManinssaavaaasliarslYILASDNNDMHSSVLGAINVNTSLVEELMGCLLSCEPDLHYVGVVVGEPSFKPYLGYVDDVSRFVWNFLADRTSTPKENASSSCSKDCTNEDEHFLPSLNVANHRYVLAYSTRLMFESGTWNVLPPNSSDSMGSVDPVSTESNWNTIGLWVYTIQNGAYDHLILIGGIAVTISAYFMIALARSFITKALKRD
Disordered region (IsUnstruct)
***VMFSMEAFIISIGRSLDSIVDLTWIICFGVSFGAFSLLAIFISPTSFMYWVNHFQFSNFFYVLVLISEDFDIAFTNKFYHSHLDDMANINSSAAVAAASLIARSLYILASDNNDMHSSVLGAINVNTSLVEELMGCLLSCEPDLHYVGVVVGEPSFKPYLGYVDDVSRFVWNFLAD**********************HFLPSLNVANHRYVLAYSTRLMFESGTWNVL*****************SNWNTIGLWVYTIQNGAYDHLILIGGIAVTISAYFMIALARSFITK*****
Disordered Region (DISOPRED)
**DVMFSMEAFIISIGRSLDSIVDLTWIICFGVS**********IS**SFMYWVNHFQFSNFFYVLVLISEDFDIAFTNKFYHSHLDDMANINSSAAVAAASLIARSLYILASDNNDMHSSVLGAINVNTSLVEELMGCLLSCEPDLHYVGVVVG*PSFKPYLGYVDDVSRFVWNFLADRTSTPK*************EDEHFLPSLNVANHRYVLAYSTRLMFESGTWNVLPPNSSDSMGSVDPVSTESNWNTIGLWVYTIQNGAYDHLILIGGIAVTISAYFMIALARSFITKA****
Disordered Region (DISEMBL)
TLDVMFSMEAFIISIGRSLDSIVDLTWIICFGVSFGAFSLLAIFISPTSFMYWVNHFQFSNFFYVLVLISEDFDIAFTNKFYHSHLDDMANINSSAAVAAASLIARSLYILASDNNDMHSSVLGAINVNTSLVEELMGCLLSCEPDLHYVGVVVGEPSFKPYLGYVDDVSRFVWNFLADR*****************NEDEHFLPSLNVANHRYVLAYSTRLMFESGTWNVLPPNS***********TESNWNTIGLWVYTIQNGAYDHLILIGGIAVTISAYFMIALARSFITKALKRD
Disordered Region (DISPRO)
TLDVMFSMEAFIISIGRSLDSIVDLTWIICFGVSFGAFSLLAIFISPTSFMYWVNHFQFSNFFYVLVLISEDFDIAFTNKFYHSHLDDMANINSSAAVAAASLIARSLYILASDNNDMHSSVLGAINVNTSLVEELMGCLLSCEPDLHYVGVVVGEPSFKPYLGYVDDVSRFVWNFLADRTSTP*******CS**CTNEDEHFLPSLNVANHRYVLAYSTRLMFESGTWNVLPPNSSDSMGSVDPVSTESNWNTIGLWVYTIQNGAYDHLILIGGIAVTISAYFMIALARSFITKALK**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
TLDVMFSMEAFIISIGRSLDSIVDLTWIICFGVSFGAFSLLAIFISPTSFMYWVNHFQFSNFFYVLVLISEDFDIAFTNKFYHSHLDDMANINSSAAVAAASLIARSLYILASDNNDMHSSVLGAINVNTSLVEELMGCLLSCEPDLHYVGVVVGEPSFKPYLGYVDDVSRFVWNFLADRTSTPKENASSSCSKDCTNEDEHFLPSLNVANHRYVLAYSTRLMFESGTWNVLPPNSSDSMGSVDPVSTESNWNTIGLWVYTIQNGAYDHLILIGGIAVTISAYFMIALARSFITKALKRD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	300	2.2.26 [Sep-21-2011]
Q8GUM5	676	Nicastrin OS=Arabidopsis	yes	no	0.836	0.371	0.530	1e-70

>sp|Q8GUM5|NICA_ARATH Nicastrin OS=Arabidopsis thaliana GN=At3g52640/At3g52650 PE=2 SV=1

 Score =  266 bits (681), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 149/281 (53%), Positives = 190/281 (67%), Gaps = 30/281 (10%)

Query: 45  ISPTSFMYWVNHFQFSNFFYVLVLISEDFDIAFTNKFYHSHLDDMANINSSAAVAAASLI 104
           I P+S M ++     ++      ++ EDFD  F NKFYHSHLDD++NINSS+ VAAAS++
Sbjct: 401 IPPSSLMAFMRKNPQTS-----AVVLEDFDTNFVNKFYHSHLDDLSNINSSSVVAAASVV 455

Query: 105 ARSLYILASDNNDMHSSVLGAINVNTSLVEELMGCLLSCEPDL----------------- 147
           AR+LYILASDN D  +S LG+I+VN S VEEL+ CLL+CEP L                 
Sbjct: 456 ARTLYILASDNKDTSNSALGSIHVNASFVEELLTCLLACEPGLSCNLVKDYISPTNTCPG 515

Query: 148 HYVGVVVGEPSFKPYLGYVDDVSRFVWNFLADRTSTPKENASSSCSKD-CTNEDEHFLPS 206
           +Y GV++GEPS KPYLGYV DVSRF+WNFLAD+TS  K N +S CSK  C+  DE  + +
Sbjct: 516 NYAGVILGEPSSKPYLGYVGDVSRFLWNFLADKTSVQKGNTTSVCSKGVCSKTDEVCIKA 575

Query: 207 LN-------VANHRYVLAYSTRLMFESGTWNVLPPNSSDSMGSVDPVSTESNWNTIGLWV 259
            +       V+  RYV AYSTRL +  G W +LP NSSDSMG VDPV TESNW+T+ + V
Sbjct: 576 ESNKEGTCVVSTTRYVPAYSTRLKYNDGAWTILPQNSSDSMGMVDPVWTESNWDTLRVHV 635

Query: 260 YTIQNGAYDHLILIGGIAVTISAYFMIALARSFITKALKRD 300
           YT+Q+ AYD+ +L+ GI VT  AY  I  A+S ITKALK+D
Sbjct: 636 YTVQHSAYDNAVLVAGITVTTLAYIGILAAKSIITKALKQD 676

Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	300
356539812	642	PREDICTED: nicastrin-like [Glycine max]	0.766	0.358	0.598	5e-82
356569641	619	PREDICTED: nicastrin-like [Glycine max]	0.776	0.376	0.587	1e-81
225451381	671	PREDICTED: nicastrin [Vitis vinifera] gi	0.836	0.374	0.557	1e-81
224077366	640	predicted protein [Populus trichocarpa]	0.876	0.410	0.544	2e-81
449445945	665	PREDICTED: nicastrin-like [Cucumis sativ	0.833	0.375	0.564	3e-77
449523243	330	PREDICTED: LOW QUALITY PROTEIN: nicastri	0.833	0.757	0.564	5e-77
297819986	734	hypothetical protein ARALYDRAFT_485634 [	0.836	0.341	0.530	2e-69
7669938	486	putative protein [Arabidopsis thaliana]	0.836	0.516	0.530	5e-69
42565868	676	nicastrin [Arabidopsis thaliana] gi|3708	0.836	0.371	0.530	6e-69
312282115	676	unnamed protein product [Thellungiella h	0.836	0.371	0.523	6e-69

>gi|356539812|ref|XP_003538387.1| PREDICTED: nicastrin-like [Glycine max]

 Score =  310 bits (794), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 152/254 (59%), Positives = 179/254 (70%), Gaps = 24/254 (9%)

Query: 71  EDFDIAFTNKFYHSHLDDMANINSSAAVAAASLIARSLYILASDNNDMHSSVLGAINVNT 130
           EDFD  F NKFYHSHLDD++N+NSSA VAAASLIAR+LY+LAS+  D+ +S L AINVN 
Sbjct: 389 EDFDSVFVNKFYHSHLDDLSNVNSSAVVAAASLIARTLYMLASETEDVQNSTLAAINVNV 448

Query: 131 SLVEELMGCLLSCEPDL-----------------HYVGVVVGEPSFKPYLGYVDDVSRFV 173
           SLVE+LMGCLL C+P L                 HYVGV++ EPS  PY GY++DV RF+
Sbjct: 449 SLVEQLMGCLLDCDPGLSCELVTKYISPMSTCPSHYVGVILDEPSSTPYTGYINDVPRFI 508

Query: 174 WNFLADRTSTPKENASSSCSKDCTNEDEHFLPSLN-------VANHRYVLAYSTRLMFES 226
           WNFLADRTS P+EN SS C   C   DE  + +         ++  RYV AYSTRL FES
Sbjct: 509 WNFLADRTSIPRENNSSDCQHGCNGRDEVCIKAETDGKGVCVLSTTRYVPAYSTRLKFES 568

Query: 227 GTWNVLPPNSSDSMGSVDPVSTESNWNTIGLWVYTIQNGAYDHLILIGGIAVTISAYFMI 286
           G WNVLPPNSSD MG VDPV TESNWNTIG+ VY +QN AYD L+L GGI +T+ AY  I
Sbjct: 569 GVWNVLPPNSSDKMGVVDPVWTESNWNTIGMRVYIVQNAAYDRLVLFGGITLTVFAYLAI 628

Query: 287 ALARSFITKALKRD 300
           A AR+F  KA+KRD
Sbjct: 629 ATARAFFNKAMKRD 642

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569641|ref|XP_003553007.1| PREDICTED: nicastrin-like [Glycine max]

 Score =  308 bits (790), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 151/257 (58%), Positives = 181/257 (70%), Gaps = 24/257 (9%)

Query: 68  LISEDFDIAFTNKFYHSHLDDMANINSSAAVAAASLIARSLYILASDNNDMHSSVLGAIN 127
           ++ EDFD  F NKFYHSHLDD++N+NSSA VAAASLIAR+LY+LAS+  D+ +S L AIN
Sbjct: 363 VVLEDFDSVFVNKFYHSHLDDLSNVNSSAVVAAASLIARTLYMLASETEDVQNSTLAAIN 422

Query: 128 VNTSLVEELMGCLLSCEPDL-----------------HYVGVVVGEPSFKPYLGYVDDVS 170
           VN SLVE+L+GCLL C+P L                 HYVGV++ EPS  PY GY++DV 
Sbjct: 423 VNVSLVEQLLGCLLDCDPGLSCELVKKYISPMSTCPSHYVGVILDEPSSAPYAGYINDVP 482

Query: 171 RFVWNFLADRTSTPKENASSSCSKDCTNEDEHFLPSLN-------VANHRYVLAYSTRLM 223
           RF+WNFLADRTS P+EN  S C   C   DE  + +         ++  RYV AYSTRL 
Sbjct: 483 RFIWNFLADRTSIPRENNISDCQHGCNGRDEVCVKAETDGKGVCVLSTTRYVPAYSTRLK 542

Query: 224 FESGTWNVLPPNSSDSMGSVDPVSTESNWNTIGLWVYTIQNGAYDHLILIGGIAVTISAY 283
           FESG WNVLPPNSSD MG VDPV TESNWNTIG+ VYT+QN AYD L+L GGI +T+ AY
Sbjct: 543 FESGVWNVLPPNSSDKMGVVDPVWTESNWNTIGMRVYTVQNAAYDRLVLFGGITLTVFAY 602

Query: 284 FMIALARSFITKALKRD 300
             IA AR+F  KA+KRD
Sbjct: 603 LAIATARAFFNKAMKRD 619

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451381|ref|XP_002264144.1| PREDICTED: nicastrin [Vitis vinifera] gi|296087098|emb|CBI33472.3| unnamed protein product [Vitis vinifera]

 Score =  308 bits (790), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 156/280 (55%), Positives = 198/280 (70%), Gaps = 29/280 (10%)

Query: 45  ISPTSFMYWVNHFQFSNFFYVLVLISEDFDIAFTNKFYHSHLDDMANINSSAAVAAASLI 104
           I P+S M ++     ++      ++ EDFD  F N+FYHSHLDD++N+NSSA VAAASL+
Sbjct: 397 IPPSSLMSFLRKNSSTSG-----IVLEDFDATFANQFYHSHLDDLSNVNSSAIVAAASLV 451

Query: 105 ARSLYILASDNNDMHSSVLGAINVNTSLVEELMGCLLSCEPDL----------------- 147
           AR+LYILASD+ D+ +S L AINVN SLVE L+GCLL+C+P L                 
Sbjct: 452 ARTLYILASDDKDLSTSALSAINVNASLVEALLGCLLNCDPGLSCDLVKKYIAPRTNCPS 511

Query: 148 HYVGVVVGEPSFKPYLGYVDDVSRFVWNFLADRTSTPKENASSSCSKDCTNEDEHFLPS- 206
           +YVGV++GEPS   Y GYV DVSRF+WNFLADRTS P+ENA+S+C KDC+NE E  +   
Sbjct: 512 NYVGVLLGEPSATLYPGYVSDVSRFIWNFLADRTSIPRENATSACPKDCSNEGEVCIGEE 571

Query: 207 ------LNVANHRYVLAYSTRLMFESGTWNVLPPNSSDSMGSVDPVSTESNWNTIGLWVY 260
                   ++  RYV AYSTRLMFESG W V+P NSS+SMG+ DPV TESNW+ IGL VY
Sbjct: 572 LDGKGVCVISTTRYVPAYSTRLMFESGIWKVMPLNSSNSMGTEDPVWTESNWDAIGLRVY 631

Query: 261 TIQNGAYDHLILIGGIAVTISAYFMIALARSFITKALKRD 300
           T+QN AYD L+L+ G+ VT+ AY  I +AR+FITKALK+D
Sbjct: 632 TVQNAAYDRLVLLAGLVVTVLAYLAIVVARAFITKALKQD 671

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077366|ref|XP_002305230.1| predicted protein [Populus trichocarpa] gi|222848194|gb|EEE85741.1| predicted protein [Populus trichocarpa]

 Score =  308 bits (788), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 159/292 (54%), Positives = 203/292 (69%), Gaps = 29/292 (9%)

Query: 33  VSFGAFSLLAIFISPTSFMYWVNHFQFSNFFYVLVLISEDFDIAFTNKFYHSHLDDMANI 92
           ++  + S L   I P+S M ++     ++      ++ EDFD +F++KFYHSHLDDM+NI
Sbjct: 354 ITVSSASTLNPGIPPSSLMAFLKKNPSTSG-----MVLEDFDTSFSDKFYHSHLDDMSNI 408

Query: 93  NSSAAVAAASLIARSLYILASDNNDMHSSVLGAINVNTSLVEELMGCLLSCEPDL----- 147
           NSSA VAAASL+AR+LYILASD+ ++ S+ L AINVN SLVEELM CLL CEP L     
Sbjct: 409 NSSAIVAAASLVARTLYILASDDKNLSSTALDAINVNASLVEELMSCLLDCEPGLSCELV 468

Query: 148 ------------HYVGVVVGEPSFKPYLGYVDDVSRFVWNFLADRTSTPKENASSSCSKD 195
                       HYVGV++GEPS  PYLGYVDDVSRF+WNFLADRTS+  E+ASS CSK+
Sbjct: 469 KSYIVPTNQCPNHYVGVILGEPSSNPYLGYVDDVSRFMWNFLADRTSSSMEDASSDCSKE 528

Query: 196 CTNEDEHFLPS-------LNVANHRYVLAYSTRLMFESGTWNVLPPNSSDSMGSVDPVST 248
           C+N+    + +         ++  RYV AYSTRL +ESGTW VLP +SSD MG VDPV T
Sbjct: 529 CSNKGGVCIKAEVDGKGVCAISTTRYVPAYSTRLNYESGTWRVLPSDSSDPMGMVDPVWT 588

Query: 249 ESNWNTIGLWVYTIQNGAYDHLILIGGIAVTISAYFMIALARSFITKALKRD 300
           ESNW+TI L VYT+Q+ A+D L+L+ GI +T+ AY  I L R++I KALKRD
Sbjct: 589 ESNWDTIRLRVYTVQDAAFDRLVLLAGITITVMAYLAIVLTRAYIAKALKRD 640

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445945|ref|XP_004140732.1| PREDICTED: nicastrin-like [Cucumis sativus]

 Score =  294 bits (753), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 158/280 (56%), Positives = 190/280 (67%), Gaps = 30/280 (10%)

Query: 45  ISPTSFM-YWVNHFQFSNFFYVLVLISEDFDIAFTNKFYHSHLDDMANINSSAAVAAASL 103
           I P+S M +   + Q S       ++ EDFD  FTN+FY S+LDD+ NINSSA  AAA L
Sbjct: 392 IPPSSLMAFLAKNPQVSG------VVLEDFDTGFTNQFYQSYLDDLHNINSSAIEAAALL 445

Query: 104 IARSLYILASDNNDMHSSVLGAINVNTSLVEELMGCLLSCEPDL---------------- 147
           +AR+LYILA +  ++ SSVL AI VNTSLVEEL+GCLL+C+P L                
Sbjct: 446 VARTLYILAINKKELSSSVLTAIKVNTSLVEELIGCLLNCDPGLSCELVKRYISPSSVCP 505

Query: 148 -HYVGVVVGEPSFKPYLGYVDDVSRFVWNFLADRTSTPKENASSSCSKDCTNEDEHFLP- 205
            HYVGV++ EPS  PY  YV DVSRFVWNFLADRTS PKEN SS CS++C ++ E  +  
Sbjct: 506 NHYVGVILDEPSSAPYPDYVHDVSRFVWNFLADRTSIPKENTSSVCSQNCDDKSEVCIGA 565

Query: 206 -----SLNVANHRYVLAYSTRLMFESGTWNVLPPNSSDSMGSVDPVSTESNWNTIGLWVY 260
                +  ++  RY+ AYSTRL FESG W+VLPPNSSD +G+VDPV TESNWNTIGL VY
Sbjct: 566 ETGKGTCAISTTRYIPAYSTRLKFESGYWSVLPPNSSDHLGTVDPVWTESNWNTIGLRVY 625

Query: 261 TIQNGAYDHLILIGGIAVTISAYFMIALARSFITKALKRD 300
           TIQ  AYD  +L+GGI  TI AYF I   RS I KALKRD
Sbjct: 626 TIQAAAYDRFVLLGGITTTILAYFAIVAVRSSIIKALKRD 665

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449523243|ref|XP_004168633.1| PREDICTED: LOW QUALITY PROTEIN: nicastrin-like [Cucumis sativus]

 Score =  293 bits (751), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 158/280 (56%), Positives = 189/280 (67%), Gaps = 30/280 (10%)

Query: 45  ISPTSFM-YWVNHFQFSNFFYVLVLISEDFDIAFTNKFYHSHLDDMANINSSAAVAAASL 103
           I P+S M +   + Q S       ++ EDFD  FTN+FY S+LDD+ NINSSA  AAA L
Sbjct: 57  IPPSSLMAFLAKNPQVSG------VVLEDFDTGFTNQFYQSYLDDLHNINSSAIEAAALL 110

Query: 104 IARSLYILASDNNDMHSSVLGAINVNTSLVEELMGCLLSCEPDL---------------- 147
           +AR+LYILA +  ++ SSVL AI VNTSLVEEL+GCLL+C+P L                
Sbjct: 111 VARTLYILAINKKELSSSVLTAIKVNTSLVEELIGCLLNCDPGLSCELVKRYISPSSVCP 170

Query: 148 -HYVGVVVGEPSFKPYLGYVDDVSRFVWNFLADRTSTPKENASSSCSKDCTNEDEHFLP- 205
            HYVGV++ EPS  PY  YV DVSRFVWNFLADRTS PKEN SS CS++C ++ E  +  
Sbjct: 171 NHYVGVILDEPSSAPYPDYVHDVSRFVWNFLADRTSIPKENTSSVCSQNCDDKSEVCIGA 230

Query: 206 -----SLNVANHRYVLAYSTRLMFESGTWNVLPPNSSDSMGSVDPVSTESNWNTIGLWVY 260
                +  ++  RY+ AYSTRL FESG W+VLPPNSSD +G+VDPV TESNWNTIGL VY
Sbjct: 231 ETGKGTCAISTTRYIPAYSTRLKFESGYWSVLPPNSSDHLGTVDPVWTESNWNTIGLRVY 290

Query: 261 TIQNGAYDHLILIGGIAVTISAYFMIALARSFITKALKRD 300
           TIQ  AYD   L+GGI  TI AYF I   RS I KALKRD
Sbjct: 291 TIQAAAYDRXCLLGGITTTILAYFAIVAVRSSIIKALKRD 330

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297819986|ref|XP_002877876.1| hypothetical protein ARALYDRAFT_485634 [Arabidopsis lyrata subsp. lyrata] gi|297323714|gb|EFH54135.1| hypothetical protein ARALYDRAFT_485634 [Arabidopsis lyrata subsp. lyrata]

 Score =  268 bits (685), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 149/281 (53%), Positives = 190/281 (67%), Gaps = 30/281 (10%)

Query: 45  ISPTSFMYWVNHFQFSNFFYVLVLISEDFDIAFTNKFYHSHLDDMANINSSAAVAAASLI 104
           I P+S M ++     ++      ++ EDFD  F NKFYHSHLDD++NINSS+ VAAAS++
Sbjct: 459 IPPSSLMAFMRKNPQTS-----AVVLEDFDTKFVNKFYHSHLDDLSNINSSSVVAAASVV 513

Query: 105 ARSLYILASDNNDMHSSVLGAINVNTSLVEELMGCLLSCEPDL----------------- 147
           AR+LYILASDN D  +S LG+I+VN S +EEL+ CLL+CEP L                 
Sbjct: 514 ARTLYILASDNKDTSNSALGSIHVNASFIEELLTCLLACEPGLSCNLVKDYISPTNTCPG 573

Query: 148 HYVGVVVGEPSFKPYLGYVDDVSRFVWNFLADRTSTPKENASSSCSKD-CTNEDEHFLPS 206
           +Y GV++GEPS KPYLGYV DVSRF+WNFLAD+TS  K N +S CSK  C+  DE  + +
Sbjct: 574 NYAGVILGEPSSKPYLGYVGDVSRFLWNFLADKTSVQKGNTTSVCSKGVCSKTDEVCIKA 633

Query: 207 LN-------VANHRYVLAYSTRLMFESGTWNVLPPNSSDSMGSVDPVSTESNWNTIGLWV 259
            +       V+  RYV AYSTRL +  G W +LP NSSDSMG VDPV TESNW+TI + V
Sbjct: 634 ESNKEGTCVVSTTRYVPAYSTRLKYNDGAWTILPQNSSDSMGMVDPVWTESNWDTIRVHV 693

Query: 260 YTIQNGAYDHLILIGGIAVTISAYFMIALARSFITKALKRD 300
           YT+Q+ AYD+ +L+ GI VT  AY  I  A+S ITKALK+D
Sbjct: 694 YTVQHAAYDNAVLVAGITVTTLAYIGILAAKSIITKALKQD 734

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7669938|emb|CAB89225.1| putative protein [Arabidopsis thaliana]

 Score =  267 bits (682), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 149/281 (53%), Positives = 190/281 (67%), Gaps = 30/281 (10%)

Query: 45  ISPTSFMYWVNHFQFSNFFYVLVLISEDFDIAFTNKFYHSHLDDMANINSSAAVAAASLI 104
           I P+S M ++     ++      ++ EDFD  F NKFYHSHLDD++NINSS+ VAAAS++
Sbjct: 211 IPPSSLMAFMRKNPQTS-----AVVLEDFDTNFVNKFYHSHLDDLSNINSSSVVAAASVV 265

Query: 105 ARSLYILASDNNDMHSSVLGAINVNTSLVEELMGCLLSCEPDL----------------- 147
           AR+LYILASDN D  +S LG+I+VN S VEEL+ CLL+CEP L                 
Sbjct: 266 ARTLYILASDNKDTSNSALGSIHVNASFVEELLTCLLACEPGLSCNLVKDYISPTNTCPG 325

Query: 148 HYVGVVVGEPSFKPYLGYVDDVSRFVWNFLADRTSTPKENASSSCSKD-CTNEDEHFLPS 206
           +Y GV++GEPS KPYLGYV DVSRF+WNFLAD+TS  K N +S CSK  C+  DE  + +
Sbjct: 326 NYAGVILGEPSSKPYLGYVGDVSRFLWNFLADKTSVQKGNTTSVCSKGVCSKTDEVCIKA 385

Query: 207 LN-------VANHRYVLAYSTRLMFESGTWNVLPPNSSDSMGSVDPVSTESNWNTIGLWV 259
            +       V+  RYV AYSTRL +  G W +LP NSSDSMG VDPV TESNW+T+ + V
Sbjct: 386 ESNKEGTCVVSTTRYVPAYSTRLKYNDGAWTILPQNSSDSMGMVDPVWTESNWDTLRVHV 445

Query: 260 YTIQNGAYDHLILIGGIAVTISAYFMIALARSFITKALKRD 300
           YT+Q+ AYD+ +L+ GI VT  AY  I  A+S ITKALK+D
Sbjct: 446 YTVQHSAYDNAVLVAGITVTTLAYIGILAAKSIITKALKQD 486

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42565868|ref|NP_190832.3| nicastrin [Arabidopsis thaliana] gi|37081112|sp|Q8GUM5.1|NICA_ARATH RecName: Full=Nicastrin; Flags: Precursor gi|27311553|gb|AAO00742.1| Unknown protein [Arabidopsis thaliana] gi|30725508|gb|AAP37776.1| At3g52640 [Arabidopsis thaliana] gi|332645453|gb|AEE78974.1| nicastrin [Arabidopsis thaliana]

 Score =  266 bits (681), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 149/281 (53%), Positives = 190/281 (67%), Gaps = 30/281 (10%)

Query: 45  ISPTSFMYWVNHFQFSNFFYVLVLISEDFDIAFTNKFYHSHLDDMANINSSAAVAAASLI 104
           I P+S M ++     ++      ++ EDFD  F NKFYHSHLDD++NINSS+ VAAAS++
Sbjct: 401 IPPSSLMAFMRKNPQTS-----AVVLEDFDTNFVNKFYHSHLDDLSNINSSSVVAAASVV 455

Query: 105 ARSLYILASDNNDMHSSVLGAINVNTSLVEELMGCLLSCEPDL----------------- 147
           AR+LYILASDN D  +S LG+I+VN S VEEL+ CLL+CEP L                 
Sbjct: 456 ARTLYILASDNKDTSNSALGSIHVNASFVEELLTCLLACEPGLSCNLVKDYISPTNTCPG 515

Query: 148 HYVGVVVGEPSFKPYLGYVDDVSRFVWNFLADRTSTPKENASSSCSKD-CTNEDEHFLPS 206
           +Y GV++GEPS KPYLGYV DVSRF+WNFLAD+TS  K N +S CSK  C+  DE  + +
Sbjct: 516 NYAGVILGEPSSKPYLGYVGDVSRFLWNFLADKTSVQKGNTTSVCSKGVCSKTDEVCIKA 575

Query: 207 LN-------VANHRYVLAYSTRLMFESGTWNVLPPNSSDSMGSVDPVSTESNWNTIGLWV 259
            +       V+  RYV AYSTRL +  G W +LP NSSDSMG VDPV TESNW+T+ + V
Sbjct: 576 ESNKEGTCVVSTTRYVPAYSTRLKYNDGAWTILPQNSSDSMGMVDPVWTESNWDTLRVHV 635

Query: 260 YTIQNGAYDHLILIGGIAVTISAYFMIALARSFITKALKRD 300
           YT+Q+ AYD+ +L+ GI VT  AY  I  A+S ITKALK+D
Sbjct: 636 YTVQHSAYDNAVLVAGITVTTLAYIGILAAKSIITKALKQD 676

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312282115|dbj|BAJ33923.1| unnamed protein product [Thellungiella halophila]

 Score =  266 bits (681), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 147/281 (52%), Positives = 190/281 (67%), Gaps = 30/281 (10%)

Query: 45  ISPTSFMYWVNHFQFSNFFYVLVLISEDFDIAFTNKFYHSHLDDMANINSSAAVAAASLI 104
           I P+S M ++     ++      ++ EDFD  F NKFYHSHLDD++NINSS+ VAAAS++
Sbjct: 401 IPPSSLMAFMKKNPQTS-----AVVLEDFDAKFVNKFYHSHLDDLSNINSSSVVAAASVV 455

Query: 105 ARSLYILASDNNDMHSSVLGAINVNTSLVEELMGCLLSCEPDL----------------- 147
           AR+LYILA+D+ D  +S LG+I+VN S VEEL+ CLLSCEP L                 
Sbjct: 456 ARTLYILANDSKDTSNSALGSIHVNASFVEELLACLLSCEPGLSCNLVKDYISPTNTCPG 515

Query: 148 HYVGVVVGEPSFKPYLGYVDDVSRFVWNFLADRTSTPKENASSSCSKD-CTNEDEHFLPS 206
           +Y GV++GEPS KPYLGYV DVSRF+WN LAD+TS  K N +S CSK  C+  DE  + +
Sbjct: 516 NYAGVILGEPSSKPYLGYVSDVSRFLWNLLADKTSVQKRNTASVCSKGACSKSDEVCIKA 575

Query: 207 LN-------VANHRYVLAYSTRLMFESGTWNVLPPNSSDSMGSVDPVSTESNWNTIGLWV 259
            +       V+  RYV AYSTRL ++ G W +LP N+SDSMG VDPV TESNWNTI + V
Sbjct: 576 ESNKEGTCVVSTTRYVPAYSTRLKYDDGAWTILPQNTSDSMGMVDPVWTESNWNTIRVHV 635

Query: 260 YTIQNGAYDHLILIGGIAVTISAYFMIALARSFITKALKRD 300
           YT+Q+  YD+ +L+ GI VT  AY  I +A+SFITK LK+D
Sbjct: 636 YTVQHSVYDNAVLVAGITVTTLAYIGILVAKSFITKILKQD 676

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	300
TAIR|locus:2083223	705	AT3G52640 [Arabidopsis thalian	0.57	0.242	0.524	2e-50

TAIR|locus:2083223 AT3G52640 [Arabidopsis thaliana (taxid:3702)]

 Score = 459 (166.6 bits), Expect = 2.0e-50, Sum P(2) = 2.0e-50
 Identities = 95/181 (52%), Positives = 125/181 (69%)

Query:   128 VNTSLVEELMGCLLSCEPDLHYVGVVVGEPSFKPYLGYVDDVSRFVWNFLADRTSTPKEN 187
             ++ +LV++ +    +C P  +Y GV++GEPS KPYLGYV DVSRF+WNFLAD+TS  K N
Sbjct:   527 LSCNLVKDYISPTNTC-PG-NYAGVILGEPSSKPYLGYVGDVSRFLWNFLADKTSVQKGN 584

Query:   188 ASSSCSKD-CTNEDEHFLPSLN-------VANHRYVLAYSTRLMFESGTWNVLPPNSSDS 239
              +S CSK  C+  DE  + + +       V+  RYV AYSTRL +  G W +LP NSSDS
Sbjct:   585 TTSVCSKGVCSKTDEVCIKAESNKEGTCVVSTTRYVPAYSTRLKYNDGAWTILPQNSSDS 644

Query:   240 MGSVDPVSTESNWNTIGLWVYTIQNGAYDHLILIGGIAVTISAYFMIALARSFITKALKR 299
             MG VDPV TESNW+T+ + VYT+Q+ AYD+ +L+ GI VT  AY  I  A+S ITKALK+
Sbjct:   645 MGMVDPVWTESNWDTLRVHVYTVQHSAYDNAVLVAGITVTTLAYIGILAAKSIITKALKQ 704

Query:   300 D 300
             D
Sbjct:   705 D 705

GO:0005576 "extracellular region" evidence=ISM

GO:0009507 "chloroplast" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0016485 "protein processing" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00032963001 SubName- Full=Chromosome chr14 scaffold_63, whole genome shotgun sequence; (630 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	300
pfam05450	227	pfam05450, Nicastrin, Nicastrin	6e-08

>gnl|CDD|218594 pfam05450, Nicastrin, Nicastrin

 Score = 52.2 bits (125), Expect = 6e-08
 Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 12/54 (22%)

Query: 68  LISEDFDIAFTNKFYHSHLDDMANINS------------SAAVAAASLIARSLY 109
           ++  D    F N+FYHS LDD  NINS             + V AASL+AR+LY
Sbjct: 174 VVLADRPTEFENRFYHSILDDAENINSDTEDLNEKDSQQMSVVNAASLVARALY 227

Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch. Nicastrin is synthesised in fibroblasts and neurons as an endoglycosidase-H-sensitive glycosylated precursor protein (immature nicastrin) and is then modified by complex glycosylation in the Golgi apparatus and by sialylation in the trans-Golgi network (mature nicastrin). A region featured in this family has a fold similar to human transferrin receptor (TfR) and a bacterial aminopeptidase. It is implicated in the pathogenesis of Alzheimer's disease. Length = 227

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	300
KOG2657	596	consensus Transmembrane glycoprotein nicastrin [Si	100.0
PF05450	234	Nicastrin: Nicastrin; InterPro: IPR008710 Nicastri	99.81
PF04389	179	Peptidase_M28: Peptidase family M28; InterPro: IPR	81.72

>KOG2657 consensus Transmembrane glycoprotein nicastrin [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.8e-57  Score=443.52  Aligned_cols=258  Identities=22%  Similarity=0.242  Sum_probs=236.0

Q ss_pred             CcchhhhHHHHHHHhhcCchhhcccceeEeeceeeeeecCCCCCCCCccHHHHhhc-cCCCCcceEEEEEeccCCccccc
Q 044152            1 TLDVMFSMEAFIISIGRSLDSIVDLTWIICFGVSFGAFSLLAIFISPTSFMYWVNH-FQFSNFFYVLVLISEDFDIAFTN   79 (300)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~s~~~~~LPPSSl~SFLr~-~~i~g~~~~~~vVltd~d~~F~N   79 (300)
                      |+|+.-+.|+.++|+|++|.+                ++..+++|||||+|||||+ +++.+      |||+||+.+|+|
T Consensus       299 tld~L~~~ekSlrs~~f~ll~----------------~s~~s~~lPPsSlqsFlR~dpn~sa------VvLad~~~~f~N  356 (596)
T KOG2657|consen  299 TLDVLDRIEKSLRSHAFDLLK----------------PSGSSDRLPPSSLQSFLRADPNVSA------VVLADYGKEFEN  356 (596)
T ss_pred             HHHHHHHHHhcccccCeeeec----------------CCCCCCCCChHHHHHHHhhCCCcce------EEeccCCchhhh
Confidence            578999999999999998864                5778899999999999998 99999      999999999999


Q ss_pred             cccccccccccccC---------------------HHHHHHHHHHHHHHHHHHHcCCCCCCcccccccccCHHHHHHHHh
Q 044152           80 KFYHSHLDDMANIN---------------------SSAAVAAASLIARSLYILASDNNDMHSSVLGAINVNTSLVEELMG  138 (300)
Q Consensus        80 k~Y~S~lD~~~ni~---------------------~~~i~~vAt~vArsLy~lA~g~~~~~~~~~~~i~vd~~lV~eLl~  138 (300)
                      |||||||||++|||                     ++.+.++|+.++++||+.+.|+..     ...+.+|+.++.++||
T Consensus       357 KyYhSilDdaeNin~sy~~al~evea~~~~ilas~ak~v~nva~~v~~aly~~~~gt~f-----tcl~~anP~~~c~fly  431 (596)
T KOG2657|consen  357 KYYHSILDDAENINDSYEKALQEVEAVSTAILASAAKYVGNVADEVVAALYKKLIGTIF-----TCLITANPWFDCDFLY  431 (596)
T ss_pred             hhhhhhhcchhhccchhhhhhchhhhhhhcchHhhhhhhhhhHHHHHHHHHHHhhccee-----eeeeecCcchhHHHHH
Confidence            99999999999998                     788999999999999999999977     5789999999999999


Q ss_pred             hh---cc-CCCccccccccccccC---CCCccccccchhHHHHHHHHHhcCCCCCCC-CCccc-CcCCccccccchh---
Q 044152          139 CL---LS-CEPDLHYVGVVVGEPS---FKPYLGYVDDVSRFVWNFLADRTSTPKENA-SSSCS-KDCTNEDEHFLPS---  206 (300)
Q Consensus       139 Cf---~~-C~~~~~~f~~l~~~~s---~~p~~~Yi~~~t~fv~~~La~~t~~~~~~~-~~~C~-~~c~~~~~~c~~g---  206 (300)
                      ||   .+ |+    +|++.+.+.+   +.|+.+||+...++.++++++.+-.++..+ .+.|. ++|..++|+|++|   
T Consensus       432 ~fl~~an~cp----~n~ag~~qgs~l~~~P~~~Yi~v~s~t~~~~g~dk~lln~~lt~~s~~~~~nc~~~~~~~~~gp~n  507 (596)
T KOG2657|consen  432 KFLGGANHCP----FNSAGFNQGSTLMESPTAFYIVVHSLTIFALGSDKELLNVKLTKSSSHLGQNCAMYTYTWQPGPYN  507 (596)
T ss_pred             HhhcccCcCc----chhhhcccCCcccCCCcceeEEeeccchhhhhhhHHHhhcccccCcccccccccccceeeeecCCC
Confidence            99   66 99    9999877654   789999999999999999998665555433 34455 6899999999988   


Q ss_pred             ----hhccccceeeccccceeecCCceeecCCCCCCCCCCCCCCccccccCCcceEEEEecCcchhhhHHHHHHHHHHHH
Q 044152          207 ----LNVANHRYVLAYSTRLMFESGTWNVLPPNSSDSMGSVDPVSTESNWNTIGLWVYTIQNGAYDHLILIGGIAVTISA  282 (300)
Q Consensus       207 ----Cv~St~~~~~A~SPAf~~~~~~w~~~~~~s~d~~~~~ystWTES~W~~i~~rifl~~s~~~e~~~L~~Gi~v~ilS  282 (300)
                          |++||+||++|+||||++++++|.++          +|+|||||+|..+++|||++++.++|.++|.+||+|+++|
T Consensus       508 ~~g~Cv~ST~ry~~AlSpaf~~~~~~Wsst----------~ysTWTES~W~~~svriyl~~s~~~e~ttL~vGi~vlilS  577 (596)
T KOG2657|consen  508 GNGSCVKSTIRYKVALSPAFDSQTPEWSST----------RYSTWTESVWIIESVRIYLMESASFEYTTLLVGIIVLILS  577 (596)
T ss_pred             CCceeEeehhhhhhhcCcceecCCcccccc----------ccccchhhhhheeeeEEEEeccchhhhhhHHHHHHHHHHH
Confidence                99999999999999999999999999          7999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH-HHHHHhhc
Q 044152          283 YFMIALARS-FITKALKR  299 (300)
Q Consensus       283 ~~~i~~i~~-~~~k~~k~  299 (300)
                      ++++|.+++ .|.|.+|.
T Consensus       578 ~i~vy~iss~vlf~dl~e  595 (596)
T KOG2657|consen  578 IIAVYRISSTVLFVDLGE  595 (596)
T ss_pred             HHHHhhhcceEEEecCCC
Confidence            999999998 77777665

>PF05450 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch

Probab=99.81  E-value=1.7e-20  Score=172.60  Aligned_cols=68  Identities=34%  Similarity=0.494  Sum_probs=63.8

Q ss_pred             eeecCCCCCCCCccHHHHhhc-cCCCCcceEEEEEeccCCccccccccccccccccccC-------------------HH
Q 044152           36 GAFSLLAIFISPTSFMYWVNH-FQFSNFFYVLVLISEDFDIAFTNKFYHSHLDDMANIN-------------------SS   95 (300)
Q Consensus        36 ~~~s~~~~~LPPSSl~SFLr~-~~i~g~~~~~~vVltd~d~~F~Nk~Y~S~lD~~~ni~-------------------~~   95 (300)
                      ..+++.+++|||||+|||||+ ++|||      |||+|||++|+||||||+||+.+|||                   ++
T Consensus       147 ~~~~~~~~~LPPsS~~sFLr~~~~i~~------vVLtd~~~~f~N~~y~S~~D~~~ni~~~y~~~~~~~~~~~~~~~~~~  220 (234)
T PF05450_consen  147 KKASSSNPPLPPSSLQSFLRKDPNIPG------VVLTDHDSQFTNKYYNSILDDAENINFSYPNNSTPEEDLNFVTSTQM  220 (234)
T ss_pred             eccccCCCCCCcchHHHHHccCCCCCE------EEecCCCcccccCCccCcccChhhhcCccCccCChhHhhccccHHHH
Confidence            335778999999999999999 79999      99999999999999999999999997                   48


Q ss_pred             HHHHHHHHHHHHHH
Q 044152           96 AAVAAASLIARSLY  109 (300)
Q Consensus        96 ~i~~vAt~vArsLy  109 (300)
                      +|++||++|||+||
T Consensus       221 ~~~~va~~va~~lY  234 (234)
T PF05450_consen  221 SLANVATLVARALY  234 (234)
T ss_pred             HHHHHHHHHHHhhC
Confidence            99999999999997

Nicastrin is synthesised in fibroblasts and neurons as an endoglycosidase-H-sensitive glycosylated precursor protein (immature nicastrin) and is then modified by complex glycosylation in the Golgi apparatus and by sialylation in the trans-Golgi network (mature nicastrin) [].; GO: 0016485 protein processing, 0016021 integral to membrane

>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=81.72  E-value=1.6  Score=37.36  Aligned_cols=45  Identities=13%  Similarity=0.175  Sum_probs=35.2

Q ss_pred             CCCCccHHHHhhccCCCCcceEEEEEeccCCccccccccccccccccccCHHHH
Q 044152           44 FISPTSFMYWVNHFQFSNFFYVLVLISEDFDIAFTNKFYHSHLDDMANINSSAA   97 (300)
Q Consensus        44 ~LPPSSl~SFLr~~~i~g~~~~~~vVltd~d~~F~Nk~Y~S~lD~~~ni~~~~i   97 (300)
                      ..++|--..|.+ .+||+      +-+.+.+  +.+++||+..|+.+++|.+.|
T Consensus       134 ~~~~sD~~~F~~-~gip~------~~~~~~~--~~~~~~Ht~~Dt~~~~~~~~l  178 (179)
T PF04389_consen  134 TFGGSDHYPFSK-AGIPA------VTLSSTD--GYNPYYHTPEDTPDNLDPDTL  178 (179)
T ss_dssp             STTSSTCHHHHT-TT-EE------EEEEESS--SSGTTTTSTT-SGGGC-HHHH
T ss_pred             CCCCCCcHhhhc-CCEeE------EEEEecC--CCCCCCCCcccChhhcCCccC
Confidence            345566889995 89999      8888888  678999999999999998776

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in metallopeptidases belonging to the MEROPS peptidase family M28 (aminopeptidase Y, clan MH) []. They also contain a transferrin receptor-like dimerisation domain (IPR007365 from INTERPRO) and a protease-associated PA domain (IPR003137 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A 3BI1_A 2C6C_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	300
1tkj_A	284	Aminopeptidase, SGAP; double-zinc metalloproteinas	96.24
1rtq_A	299	Bacterial leucyl aminopeptidase; bimetallic, zinc,	95.99
4fuu_A	309	Leucine aminopeptidase; phosphorylase/hydrolase li	95.61
2ek8_A	421	Aminopeptidase; metalloproteinase, hydrolase; 1.80	95.31
4f9u_A	312	CG32412; alpha/beta hydrolase, PGlu formation, PE,	95.26
3tc8_A	309	Leucine aminopeptidase; phosphorylase/hydrolase-li	94.26
2afw_A	329	Glutaminyl-peptide cyclotransferase; alpha-beta pr	93.69
3gux_A	314	Putative Zn-dependent exopeptidase; aminopeptidase	93.43
3iib_A	444	Peptidase M28; YP_926796.1, structural genomics, J	92.99
4fai_A	330	CG5976, isoform B; alpha/beta hydrolase, PGlu form	92.91
3pb6_X	330	Glutaminyl-peptide cyclotransferase-like protein;	89.68
3kas_A	640	Transferrin receptor protein 1; transferrin recept	82.26

>1tkj_A Aminopeptidase, SGAP; double-zinc metalloproteinase, calcium activation, protein- inhibitor complex, hydrolase; HET: MED; 1.15A {Streptomyces griseus} SCOP: c.56.5.4 PDB: 1f2o_A 1f2p_A* 1cp7_A 1qq9_A* 1tf9_A* 1tf8_A* 1tkh_A* 1tkf_A* 1xbu_A* 1xjo_A

Probab=96.24  E-value=0.011  Score=53.87  Aligned_cols=64  Identities=19%  Similarity=0.126  Sum_probs=52.0

Q ss_pred             CCCccHHHHhhccCCCCcceEEEEEeccCC----------------ccccccccccccccccccCHHHHHHHHHHHHHHH
Q 044152           45 ISPTSFMYWVNHFQFSNFFYVLVLISEDFD----------------IAFTNKFYHSHLDDMANINSSAAVAAASLIARSL  108 (300)
Q Consensus        45 LPPSSl~SFLr~~~i~g~~~~~~vVltd~d----------------~~F~Nk~Y~S~lD~~~ni~~~~i~~vAt~vArsL  108 (300)
                      ...|...+|.+ .+||+      +.+....                ..+.+++||+..|+.+++|.+.+.+++.++++.+
T Consensus       200 ~~~sD~~~f~~-~Gip~------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~yHt~~D~~~~id~~~l~~~~~~~~~~~  272 (284)
T 1tkj_A          200 DGRSDHAPFKN-VGVPV------GGLFTGAGYTKSAAQAQKWGGTAGQAFDRCYHSSCDSLSNINDTALDRNSDAAAHAI  272 (284)
T ss_dssp             TTCSTHHHHHH-TTCCE------EEEECCCSSBCCHHHHHHHCSCTTSBSCTTTTSTTCSTTSCCHHHHHHHHHHHHHHH
T ss_pred             CCCCchHHHHH-CCCCE------EEeecCcccccccchhhccccccccCCCCCCCCCcCChhhCCHHHHHHHHHHHHHHH
Confidence            34577888986 89999      7776542                1344799999999999999999999999999999


Q ss_pred             HHHHcCC
Q 044152          109 YILASDN  115 (300)
Q Consensus       109 y~lA~g~  115 (300)
                      +.||.++
T Consensus       273 ~~la~~~  279 (284)
T 1tkj_A          273 WTLSSGT  279 (284)
T ss_dssp             HHHHC--
T ss_pred             HHHhcCC
Confidence            9999765

>1rtq_A Bacterial leucyl aminopeptidase; bimetallic, zinc, high resolution, hydrolase; 0.95A {Vibrio proteolyticus} SCOP: c.56.5.4 PDB: 1txr_A* 1xry_A* 2dea_A 2nyq_A 3fh4_A 3vh9_A* 1lok_A 1cp6_A 1ft7_A* 1igb_A* 1amp_A 2iq6_A 2prq_A 3b3v_A 3b3w_A 3b7i_A* 3b3t_A 3b35_A 3b3c_A* 3b3s_A ...

Probab=95.99  E-value=0.013  Score=53.62  Aligned_cols=64  Identities=17%  Similarity=0.124  Sum_probs=52.0

Q ss_pred             CCCccHHHHhhccCCCCcceEEEEEeccCCccccccccccccccccccCH--HHHHHHHHHHHHHHHHHHcCC
Q 044152           45 ISPTSFMYWVNHFQFSNFFYVLVLISEDFDIAFTNKFYHSHLDDMANINS--SAAVAAASLIARSLYILASDN  115 (300)
Q Consensus        45 LPPSSl~SFLr~~~i~g~~~~~~vVltd~d~~F~Nk~Y~S~lD~~~ni~~--~~i~~vAt~vArsLy~lA~g~  115 (300)
                      ...|...+|.+ .+||+      +.+......--++|||+..|+.+++|.  +.+.+++.++++.+++||..+
T Consensus       225 ~~~sD~~~f~~-~GiP~------~~~~~~~~~~~~~~yHt~~Dt~~~~d~~~~~~~~~~~l~~~~~~~La~~~  290 (299)
T 1rtq_A          225 YACSDHASWHN-AGYPA------AMPFESKFNDYNPRIHTTQDTLANSDPTGSHAKKFTQLGLAYAIEMGSAT  290 (299)
T ss_dssp             SCCSTHHHHHH-TTCCE------ECEESSCGGGSCTTTTSTTCCGGGSCTTCHHHHHHHHHHHHHHHHHHHCC
T ss_pred             CCCCcHHHHHH-CCCCE------EEecccccccCCCCCCCccccccccCccHHHHHHHHHHHHHHHHHHhCCC
Confidence            35677889976 78999      877664332236999999999999996  688999999999999999765

>4fuu_A Leucine aminopeptidase; phosphorylase/hydrolase like fold, peptidase family M28, STR genomics, joint center for structural genomics; 1.30A {Bacteroides thetaiotaomicron}

Probab=95.61  E-value=0.021  Score=52.66  Aligned_cols=60  Identities=13%  Similarity=0.029  Sum_probs=45.4

Q ss_pred             CCCccHHH-HhhccCCCCcceEEEEEeccCCcc-ccccccccccccccccCHHHHHHHHHHHHHHHHH
Q 044152           45 ISPTSFMY-WVNHFQFSNFFYVLVLISEDFDIA-FTNKFYHSHLDDMANINSSAAVAAASLIARSLYI  110 (300)
Q Consensus        45 LPPSSl~S-FLr~~~i~g~~~~~~vVltd~d~~-F~Nk~Y~S~lD~~~ni~~~~i~~vAt~vArsLy~  110 (300)
                      ..++|=+. |.+..+||+      +=+.+++.. --+++||+..|+.++||.+.|..++.+|...||.
T Consensus       246 ~~~~sDh~~F~~~~GIP~------l~~~~~~~~~~~~~~yHT~~Dt~d~id~~~L~~vg~~vl~~ly~  307 (309)
T 4fuu_A          246 DTITDDHLFINRLARIKT------IDIIPNDPETGFPPTWHTIHDNMDHIDKNTLKAVGQTVLEVIYN  307 (309)
T ss_dssp             CCCCCHHHHHHHHTCCCE------EEECBC----CCCTTTTSTTCSGGGBCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCChHHHHhcCCCCE------EEEeccCCCCCCCCCCCCcccchhhCCHHHHHHHHHHHHHHHhh
Confidence            34566554 445589999      877665532 2367999999999999999999999999998885

>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A*

Probab=95.31  E-value=0.026  Score=54.13  Aligned_cols=59  Identities=12%  Similarity=0.206  Sum_probs=50.5

Q ss_pred             CccHHHHhhccCCCCcceEEEEEeccCCccccccccccccccccccCHHHHHHHHHHHHHHHHHHHcCC
Q 044152           47 PTSFMYWVNHFQFSNFFYVLVLISEDFDIAFTNKFYHSHLDDMANINSSAAVAAASLIARSLYILASDN  115 (300)
Q Consensus        47 PSSl~SFLr~~~i~g~~~~~~vVltd~d~~F~Nk~Y~S~lD~~~ni~~~~i~~vAt~vArsLy~lA~g~  115 (300)
                      .|-..+|.+ .+||+      +.+++..   .+++||+..|+.+++|.+.+.+++.+++..++.+|..+
T Consensus       345 ~SD~~~F~~-~GIP~------~~~~~~~---~~~~yHt~~Dt~~~i~~~~l~~~~~~~~~~~~~la~~~  403 (421)
T 2ek8_A          345 RSDHESFHA-LGIPA------ALFIHAP---VEPWYHTPNDTLDKISKEKLDNVADIVGSAVYQAARPG  403 (421)
T ss_dssp             SSTHHHHHT-TTCCE------EEEEEES---CCTTTTSTTCCGGGBCHHHHHHHHHHHHHHHHHHHSSS
T ss_pred             CCccHHHHH-CCCCE------EEEECCc---CCCCCCCcccchhhCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            456788986 89999      7776322   46899999999999999999999999999999999765

>4f9u_A CG32412; alpha/beta hydrolase, PGlu formation, PE, alzheimer'S diseas pyroglutamate, PGlu-amyloid, glycosylation, transferase, HY; HET: PBD NAG BMA MAN; 1.80A {Drosophila melanogaster} PDB: 4f9v_A*

Probab=95.26  E-value=0.037  Score=50.87  Aligned_cols=61  Identities=11%  Similarity=0.103  Sum_probs=50.7

Q ss_pred             CCCCccHHHHhhccCCCCcceEEEEEeccCCccccccccccccccccccCHHHHHHHHHHHHHHHHHHHcC
Q 044152           44 FISPTSFMYWVNHFQFSNFFYVLVLISEDFDIAFTNKFYHSHLDDMANINSSAAVAAASLIARSLYILASD  114 (300)
Q Consensus        44 ~LPPSSl~SFLr~~~i~g~~~~~~vVltd~d~~F~Nk~Y~S~lD~~~ni~~~~i~~vAt~vArsLy~lA~g  114 (300)
                      +...|--..|++ .+||+      +=+.+.+  | +++||+..|+.++||.+.|.+++.+++..+|++...
T Consensus       240 ~~~~SDH~pF~~-~GIP~------l~~~~~~--~-~~~yHt~~Dt~d~id~~~l~~~~~i~~~fv~e~l~~  300 (312)
T 4f9u_A          240 GLVDDDHRPFLD-ENVPV------LHLVATP--F-PDVWHTPRDNAANLHWPSIRNFNRVFRNFVYQYLKR  300 (312)
T ss_dssp             SCCCCTTHHHHT-TTCCE------EEEECSS--C-CTTTTSTTCSGGGCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCchHHHHH-CCCCE------EEEECCC--C-CCCCCCCccChhhCCHHHHHHHHHHHHHHHHHHHhC
Confidence            344566778887 68999      7777655  2 578999999999999999999999999999988754

>3tc8_A Leucine aminopeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG; 1.06A {Parabacteroides distasonis}

Probab=94.26  E-value=0.077  Score=49.28  Aligned_cols=62  Identities=16%  Similarity=0.215  Sum_probs=50.8

Q ss_pred             CCCCCccHHHHhhccCCCCcceEEEEEeccCCc---cccccccccccccccccCHHHHHHHHHHHHHHHHH
Q 044152           43 IFISPTSFMYWVNHFQFSNFFYVLVLISEDFDI---AFTNKFYHSHLDDMANINSSAAVAAASLIARSLYI  110 (300)
Q Consensus        43 ~~LPPSSl~SFLr~~~i~g~~~~~~vVltd~d~---~F~Nk~Y~S~lD~~~ni~~~~i~~vAt~vArsLy~  110 (300)
                      .+.-+|--.+|.+.++||+      +-+.+++.   ..-+++||+..|+.++||...|.+++.+++..||.
T Consensus       244 ~g~~~sDh~~f~~~~GiP~------~~li~~~~~~~~~~~~~~Ht~~Dt~d~id~~~l~~~~~~~~~~vy~  308 (309)
T 3tc8_A          244 GGAITDDHQYVISGRNIPS------IDIINYDPESKTGFASYWHTQKDNMENIDRETLKAAGQTVLEVIYN  308 (309)
T ss_dssp             CCCCCCHHHHHHHHHCCCE------EEEEBCCTTSSSSSCTTTTSTTCSGGGBCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCccHHHHhcCCCCE------EEEecccCcccCCCCCCCCCCcCChhhCCHHHHHHHHHHHHHHHhc
Confidence            3445677788888789999      88766632   12358999999999999999999999999999985

>2afw_A Glutaminyl-peptide cyclotransferase; alpha-beta protein, metalloprotein; HET: AHN; 1.56A {Homo sapiens} SCOP: c.56.5.8 PDB: 2afo_A 2afm_A* 2afx_A* 2afz_A 3pbb_A* 2zed_A 2zeh_A 2afu_A 2zee_A 2zeo_A 2zef_A 2zem_A 2zel_A 2zen_A 3pbe_A 2zeg_A 2zep_A 2afs_A 3si0_A* 3si2_A* ...

Probab=93.69  E-value=0.11  Score=48.39  Aligned_cols=55  Identities=9%  Similarity=0.066  Sum_probs=47.2

Q ss_pred             ccHHHHhhccCCCCcceEEEEEeccCCccccccccccccccccccCHHHHHHHHHHHHHHHHHHH
Q 044152           48 TSFMYWVNHFQFSNFFYVLVLISEDFDIAFTNKFYHSHLDDMANINSSAAVAAASLIARSLYILA  112 (300)
Q Consensus        48 SSl~SFLr~~~i~g~~~~~~vVltd~d~~F~Nk~Y~S~lD~~~ni~~~~i~~vAt~vArsLy~lA  112 (300)
                      |--.+|+++ +||+      +-+.+.+   ..++||+..|+.+++|.+.+.+++.+++..++++.
T Consensus       273 sDh~~F~~~-GiP~------~~~~~~~---~~~~yHt~~Dt~~~ld~~~l~~~~~~~~~~v~eyl  327 (329)
T 2afw_A          273 DDHIPFLRR-GVPV------LHLIPSP---FPEVWHTMDDNEENLDESTIDNLNKILQVFVLEYL  327 (329)
T ss_dssp             STTHHHHTT-TCCE------EEECCSS---CCTTTTSTTCSSTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHhHHHC-CCCE------EEEEcCC---CCCCCCCCCCchhhCCHHHHHHHHHHHHHHHHHHh
Confidence            557789984 9999      8887654   24899999999999999999999999999998865

>3gux_A Putative Zn-dependent exopeptidase; aminopeptidase, phosphorylase/hydrolase-like fold, structura genomics; 1.80A {Bacteroides vulgatus atcc 8482}

Probab=93.43  E-value=0.083  Score=49.34  Aligned_cols=62  Identities=16%  Similarity=0.175  Sum_probs=38.3

Q ss_pred             CCCCCccHHHHhhccCCCCcceEEEEEeccCC---c-cccccccccccccccccCHHHHHHHHHHHHHHHHH
Q 044152           43 IFISPTSFMYWVNHFQFSNFFYVLVLISEDFD---I-AFTNKFYHSHLDDMANINSSAAVAAASLIARSLYI  110 (300)
Q Consensus        43 ~~LPPSSl~SFLr~~~i~g~~~~~~vVltd~d---~-~F~Nk~Y~S~lD~~~ni~~~~i~~vAt~vArsLy~  110 (300)
                      .+..+|--.+|+++++||+      +-+.+++   . ..-+++||+..|+.++||...|.+++.+++..||.
T Consensus       247 ~~~~~sDh~pF~~~~GiP~------l~~i~~~~~~~~~~f~~~~Ht~~Dt~d~id~~~l~~~~~~~~~~~y~  312 (314)
T 3gux_A          247 GGETVDDHIYVNKLARIPC------VDIINYDAGNPQSSFGSFWHTVNDTMENIDRNTLKAVGQTVMDVIYN  312 (314)
T ss_dssp             CCCCCCHHHHHHHHSCCCE------EEEEBCC--------------------CBCHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCccHHHHhcCCCce------EEEecccccccccCCCCCCCCCcCcchhCCHHHHHHHHHHHHHHHhh
Confidence            3455677888888789999      8776663   1 22357999999999999999999999999999885

>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B}

Probab=92.99  E-value=0.19  Score=48.84  Aligned_cols=62  Identities=11%  Similarity=0.118  Sum_probs=50.0

Q ss_pred             ccHHHHhhccCCCCcceEEEEEeccCCccccccccccccccccccCHHHHHHHHHHHHHHHHHHHcCCCC
Q 044152           48 TSFMYWVNHFQFSNFFYVLVLISEDFDIAFTNKFYHSHLDDMANINSSAAVAAASLIARSLYILASDNND  117 (300)
Q Consensus        48 SSl~SFLr~~~i~g~~~~~~vVltd~d~~F~Nk~Y~S~lD~~~ni~~~~i~~vAt~vArsLy~lA~g~~~  117 (300)
                      |-...|.+ .+||+      +-+...+.. -+++||+..|+.++||.+.|..++.+++..++.+|..+..
T Consensus       375 SD~~~f~~-~GiP~------~~l~~~~~~-~~~~yHt~~Dt~d~id~~~l~~~~~~~~~~v~~lA~~~~~  436 (444)
T 3iib_A          375 PDVSMLPA-LGVPV------ASLRQDGSD-YFDYHHTPNDTLDKINPEALAQNVAVYAQFAWVMANSKVE  436 (444)
T ss_dssp             GGGTTSGG-GTCCE------EEEEECCTT-GGGTTTSTTCCGGGSCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             CccHHHHH-CCCCE------EEeecCCCc-CCCCCCCCccccccCCHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            44666765 78999      666543322 3579999999999999999999999999999999987655

>4fai_A CG5976, isoform B; alpha/beta hydrolase, PGlu formation, PE, alzheimer'S diseas pyroglutamate, PGlu-amyloid, transferase, hydrolase; HET: PBD; 1.65A {Drosophila melanogaster} PDB: 4fbe_A*

Probab=92.91  E-value=0.17  Score=47.13  Aligned_cols=56  Identities=13%  Similarity=0.067  Sum_probs=45.6

Q ss_pred             ccHHHHhhccCCCCcceEEEEEeccCCccccccccccccccccccCHHHHHHHHHHHHHHHHHHHc
Q 044152           48 TSFMYWVNHFQFSNFFYVLVLISEDFDIAFTNKFYHSHLDDMANINSSAAVAAASLIARSLYILAS  113 (300)
Q Consensus        48 SSl~SFLr~~~i~g~~~~~~vVltd~d~~F~Nk~Y~S~lD~~~ni~~~~i~~vAt~vArsLy~lA~  113 (300)
                      |--..|++ .+||+      +=+.+.+  | +++||+..|+.++||...|.+++.+++..+++..-
T Consensus       269 SDH~pF~~-~GIP~------l~~i~~~--~-~~~yHT~~Dt~d~iD~~tl~~~~~ii~~Fv~EyL~  324 (330)
T 4fai_A          269 DDHIPFLR-RNVPI------LHLIPVP--F-PSVWHTPDDNASVIDYATTDNLALIIRLFALEYLL  324 (330)
T ss_dssp             STTHHHHT-TTCCE------EEECCSS--C-CTTTTSTTSSGGGCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             CchHHHHH-CCCCE------EEEECCC--C-CCCCCCCcCChhhCCHHHHHHHHHHHHHHHHHHHh
Confidence            45667888 78999      7776554  2 57999999999999999999999999888876443

>3pb6_X Glutaminyl-peptide cyclotransferase-like protein; alpha/beta protein, alpha/beta-mixed fold, glutaminyl cyclas membrane; 1.05A {Homo sapiens} PDB: 3pb4_X 3pb7_X* 3pb8_X* 3pb9_X*

Probab=89.68  E-value=0.77  Score=43.15  Aligned_cols=61  Identities=11%  Similarity=0.068  Sum_probs=50.8

Q ss_pred             CCCCCCccHHHHhhccCCCCcceEEEEEeccCCccccccccccccccccccCHHHHHHHHHHHHHHHHHHH
Q 044152           42 AIFISPTSFMYWVNHFQFSNFFYVLVLISEDFDIAFTNKFYHSHLDDMANINSSAAVAAASLIARSLYILA  112 (300)
Q Consensus        42 ~~~LPPSSl~SFLr~~~i~g~~~~~~vVltd~d~~F~Nk~Y~S~lD~~~ni~~~~i~~vAt~vArsLy~lA  112 (300)
                      ..+...|--.+|++ ++||+      +=+.+.+  | .++||+.-|+.++||.+.|.+++.+++..++++.
T Consensus       268 ~~~~~~SDH~pF~~-~GIP~------~~~~~~~--f-~~~yHt~~Dt~d~id~~~l~~~~~i~~~fv~Eyl  328 (330)
T 3pb6_X          268 PFGSVEDDHIPFLR-RGVPV------LHLISTP--F-PAVWHTPADTEVNLHPPTVHNLCRILAVFLAEYL  328 (330)
T ss_dssp             SSCCCSCTTHHHHT-TTCCE------EEEECSS--C-CTTTTSTTCSGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCCchHhHHH-CCCCE------EEEEcCC--C-CCCCCCCcCchhhCCHHHHHHHHHHHHHHHHHHh
Confidence            34556677889998 99999      7776543  3 2799999999999999999999999999998764

>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A

Probab=82.26  E-value=1.2  Score=45.65  Aligned_cols=65  Identities=12%  Similarity=0.073  Sum_probs=47.3

Q ss_pred             CCCCcc-HHHHhhccCCCCcceEEEEEeccCCccccccccccccccccccCH------HHHHHHHHHHHHHHHHHHcCC
Q 044152           44 FISPTS-FMYWVNHFQFSNFFYVLVLISEDFDIAFTNKFYHSHLDDMANINS------SAAVAAASLIARSLYILASDN  115 (300)
Q Consensus        44 ~LPPSS-l~SFLr~~~i~g~~~~~~vVltd~d~~F~Nk~Y~S~lD~~~ni~~------~~i~~vAt~vArsLy~lA~g~  115 (300)
                      ++|..| ...|++..+||+      +-+. |...-...+|||.+|+.++++.      +...++|.+++..+++||-..
T Consensus       414 ~~~~~sD~~~F~~~~GIP~------~~~~-~~~~~~y~~yHT~~Dt~~~i~~~~~~~~~~h~~~a~~~g~l~l~La~~~  485 (640)
T 3kas_A          414 KLTLDNAAFPFLAYSGIPA------VSFC-FCEDTDYPYLGTTMDTYKELIERIPELNKVARAAAEVAGQFVIKLTHDV  485 (640)
T ss_dssp             CCCTTSTHHHHHHHHCCCE------EEEE-EECSSCCTTTTSTTCCHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             CCCCCcchHHHHHhCCCCe------eecc-ccCCCCCCCcCCccccHHHHHhhcCcHHHHHHHHHHHHHHHHHHHhcCC
Confidence            344444 667887789999      7765 2211013589999999988763      567889999999999999765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	300
d1rtqa_	291	Aminopeptidase {Aeromonas proteolytica [TaxId: 671	95.51
d1tkja1	277	Aminopeptidase {Streptomyces griseus [TaxId: 1911]	95.41
d2afwa1	329	Glutaminyl-peptide cyclotransferase, QPCT {Human (	94.41
d3bi1a3	304	Glutamate carboxypeptidase II FOLH1 {Human (Homo s	92.07
d1de4c3	294	Transferrin receptor ectodomain, protease-like dom	89.28

>d1rtqa_ c.56.5.4 (A:) Aminopeptidase {Aeromonas proteolytica [TaxId: 671]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Aminopeptidase
species: Aeromonas proteolytica [TaxId: 671]

Probab=95.51  E-value=0.011  Score=52.34  Aligned_cols=63  Identities=17%  Similarity=0.130  Sum_probs=51.3

Q ss_pred             CCccHHHHhhccCCCCcceEEEEEeccCCccccccccccccccccccC--HHHHHHHHHHHHHHHHHHHcCC
Q 044152           46 SPTSFMYWVNHFQFSNFFYVLVLISEDFDIAFTNKFYHSHLDDMANIN--SSAAVAAASLIARSLYILASDN  115 (300)
Q Consensus        46 PPSSl~SFLr~~~i~g~~~~~~vVltd~d~~F~Nk~Y~S~lD~~~ni~--~~~i~~vAt~vArsLy~lA~g~  115 (300)
                      .+|--..|.+ .+||+      +.+.+.+....+++||+..|+.+++|  ...+.+++.++...+++||.++
T Consensus       226 ~~SDh~~F~~-~GiPa------v~~~~~~~~~~~~~yHT~~Dt~d~id~~~~~~~~~~~l~~a~~~ela~a~  290 (291)
T d1rtqa_         226 ACSDHASWHN-AGYPA------AMPFESKFNDYNPRIHTTQDTLANSDPTGSHAKKFTQLGLAYAIEMGSAT  290 (291)
T ss_dssp             CCSTHHHHHH-TTCCE------ECEESSCGGGSCTTTTSTTCCGGGSCTTCHHHHHHHHHHHHHHHHHHHCC
T ss_pred             CCCcchhHHH-CCCCE------EEeecCCCCCCCCCCCCcccchhhcCHhHHHHHHHHHHHHHHHHHHHhcc
Confidence            3466788877 78999      87777665545789999999999998  4577888999999999999875

>d1tkja1 c.56.5.4 (A:1-277) Aminopeptidase {Streptomyces griseus [TaxId: 1911]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Aminopeptidase
species: Streptomyces griseus [TaxId: 1911]

Probab=95.41  E-value=0.018  Score=50.47  Aligned_cols=62  Identities=19%  Similarity=0.165  Sum_probs=48.5

Q ss_pred             CCCccHHHHhhccCCCCcceEEEEEe-ccCC---------------ccccccccccccccccccCHHHHHHHHHHHHHHH
Q 044152           45 ISPTSFMYWVNHFQFSNFFYVLVLIS-EDFD---------------IAFTNKFYHSHLDDMANINSSAAVAAASLIARSL  108 (300)
Q Consensus        45 LPPSSl~SFLr~~~i~g~~~~~~vVl-td~d---------------~~F~Nk~Y~S~lD~~~ni~~~~i~~vAt~vArsL  108 (300)
                      ..+|--.+|.+ .+||.      +-+ ++-+               .++-.++||+..|+.+++|.+.|.+++.++++++
T Consensus       200 ~~~SDh~~F~~-~GIP~------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~YHt~~Dt~d~l~~~~l~~~~~~v~~~v  272 (277)
T d1tkja1         200 DGRSDHAPFKN-VGVPV------GGLFTGAGYTKSAAQAQKWGGTAGQAFDRCYHSSCDSLSNINDTALDRNSDAAAHAI  272 (277)
T ss_dssp             TTCSTHHHHHH-TTCCE------EEEECCCSSBCCHHHHHHHCSCTTSBSCTTTTSTTCSTTSCCHHHHHHHHHHHHHHH
T ss_pred             CCCccchhHHH-CCCCE------EEeecCCccccchhhhhhccccccccCCCCCCCCcCChhhCCHHHHHHHHHHHHHHH
Confidence            34567888888 68888      644 2221               1223478999999999999999999999999999


Q ss_pred             HHHHc
Q 044152          109 YILAS  113 (300)
Q Consensus       109 y~lA~  113 (300)
                      +.||.
T Consensus       273 ~~LAn  277 (277)
T d1tkja1         273 WTLSS  277 (277)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            99984

>d2afwa1 c.56.5.8 (A:33-361) Glutaminyl-peptide cyclotransferase, QPCT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Glutaminyl-peptide cyclotransferase-like
domain: Glutaminyl-peptide cyclotransferase, QPCT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.41  E-value=0.031  Score=49.47  Aligned_cols=55  Identities=9%  Similarity=0.062  Sum_probs=46.0

Q ss_pred             ccHHHHhhccCCCCcceEEEEEeccCCccccccccccccccccccCHHHHHHHHHHHHHHHHHHH
Q 044152           48 TSFMYWVNHFQFSNFFYVLVLISEDFDIAFTNKFYHSHLDDMANINSSAAVAAASLIARSLYILA  112 (300)
Q Consensus        48 SSl~SFLr~~~i~g~~~~~~vVltd~d~~F~Nk~Y~S~lD~~~ni~~~~i~~vAt~vArsLy~lA  112 (300)
                      |--..|.+ .+||+      +-+.+.+.   +.+||+..|+.+++|.+.|.+++.+|+..+++..
T Consensus       273 SDH~pF~~-~GIP~------~~~~~~~~---~~~yHt~~Dt~d~ld~~~l~~v~~~l~~~v~eyl  327 (329)
T d2afwa1         273 DDHIPFLR-RGVPV------LHLIPSPF---PEVWHTMDDNEENLDESTIDNLNKILQVFVLEYL  327 (329)
T ss_dssp             STTHHHHT-TTCCE------EEECCSSC---CTTTTSTTCSSTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHH-CCCCE------EEEEcCCC---CCCCCCCcCchhhCCHHHHHHHHHHHHHHHHHHh
Confidence            34567876 68999      88877663   5689999999999999999999999999988753

>d3bi1a3 c.56.5.5 (A:57-117,A:351-593) Glutamate carboxypeptidase II FOLH1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: FolH catalytic domain-like
domain: Glutamate carboxypeptidase II FOLH1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.07  E-value=0.072  Score=47.02  Aligned_cols=61  Identities=11%  Similarity=0.144  Sum_probs=45.4

Q ss_pred             ccHHHHhhccCCCCcceEEEEEeccC---Cc--cccccccccccccccccC------HHHHHHHHHHHHHHHHHHHcC
Q 044152           48 TSFMYWVNHFQFSNFFYVLVLISEDF---DI--AFTNKFYHSHLDDMANIN------SSAAVAAASLIARSLYILASD  114 (300)
Q Consensus        48 SSl~SFLr~~~i~g~~~~~~vVltd~---d~--~F~Nk~Y~S~lD~~~ni~------~~~i~~vAt~vArsLy~lA~g  114 (300)
                      ++.+.|+++.+||+      +-+...   +.  ...+++||+.+|+.++++      -+...++|.+++..++.||..
T Consensus       230 sD~~~f~~~~GIP~------v~~~~~~~~~~~~~~~~p~YHT~~DT~d~v~~~~DP~f~~~~~~a~~~~~~~~~LA~~  301 (304)
T d3bi1a3         230 NDFEVFFQRLGIAS------GRARYTKNWETNKFSGYPLYHSVYETYELVEKFYDPMFKYHLTVAQVRGGMVFELANS  301 (304)
T ss_dssp             STHHHHHHTTCCEE------EEEEEECCSSSCCSCSCTTTTSTTCCHHHHHHHTCTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred             CccHHHHHhcCCce------eeeeeccCcCCCCCcCCCCCCCccccHHHHHhhcCcchHHHHHHHHHHHHHHHHHhCC
Confidence            56788888889999      776532   21  123468999999998875      256678888999999999853

>d1de4c3 c.56.5.5 (C:122-189,C:383-608) Transferrin receptor ectodomain, protease-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: FolH catalytic domain-like
domain: Transferrin receptor ectodomain, protease-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.28  E-value=0.16  Score=44.61  Aligned_cols=59  Identities=14%  Similarity=0.099  Sum_probs=42.0

Q ss_pred             ccHHHHhhccCCCCcceEEEEEec-cCCccccccccccccccccccC------HHHHHHHHHHHHHHHHHHHcC
Q 044152           48 TSFMYWVNHFQFSNFFYVLVLISE-DFDIAFTNKFYHSHLDDMANIN------SSAAVAAASLIARSLYILASD  114 (300)
Q Consensus        48 SSl~SFLr~~~i~g~~~~~~vVlt-d~d~~F~Nk~Y~S~lD~~~ni~------~~~i~~vAt~vArsLy~lA~g  114 (300)
                      |.-..|+++.+||+      +=+. +.+.  .+.+|||.+|+.++++      .+...++|.++|+.++.||-.
T Consensus       225 sD~~pF~~~~GIP~------i~~~~~~~~--~~~~yHt~~DT~~~l~~~~~~~~~~~~a~A~v~~~l~~~LAn~  290 (294)
T d1de4c3         225 NAAFPFLAYSGIPA------VSFCFCEDT--DYPYLGTTMDTYKELIERIPELNKVARAAAEVAGQFVIKLTHD  290 (294)
T ss_dssp             STHHHHHHTTCCCE------EEEEEECSS--CCTTTTSTTCSHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             CCchhHHHhCCCee------EEeeccCCC--CCCCCCCccccHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhCc
Confidence            55788998889998      5442 2222  2468999999988764      234556778888899999843