Citrus Sinensis ID: 044162

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------37
Protein Sequence
MNFNGVVANNKKFCSWTGSDSLPLQLPLLSVSEEHTICPHATILNGMCVVCDKLMDDSYGLCFDYIEKGLRYSIDEISRLKKRNTKNLLRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKYLDLVLGQENSIVIVDDTESVWGGRVENLITVGSYDFFKDKKKNDCKSYSEQMSDESESDGALANILRALKAVHALYFDNPGNHAAGRDVRSCLAKIRSRILMGCTILFGDDDFEELPLTWSRAEEMGAICTLVTDASVTHVVSSNTQSETFEWAE
Secondary Structure (PSIPRED)
ccccccEEccccEEEEcccccccccccccccccccccccccEEEcccccccccccccccccEEEEccccccccHHHHHHHHHHHHHHHHHcccEEEEEEcccccccccccccccccHHHHHHHHHHcccccccccccccccEEEEccccEEEEEEcccHHHHHHHHHHccEEEEEccccHHHHHHHHHHHccccccccccEEEcccccccccccccccccccccEEEEEccccccccccccEEEEccccccccccccccccHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHccccccEEEcccccccccHHHHHHHHHcccEEEccccccccEEEEcccccHHHHHHc
Secondary Structure Prediction (SSPRO)
cccccEEccccHHccccccEEEcccccccEEEEEcccccccEEEccEEEEccccccccccEEEEEcccccEEcHHHHHHHcHHHHHHHHHcccEEEEEEcccEEEEccccHHHccccccccHHHcccccccccccccccccccccccccEEEEEccccHHHHHHHHHHHHHEEEEcHcHHHHHHHHHHHHcccccccccEEEEccccccccccccccccccccEEEEEEccccccccccccEEEEEEEEEEccccccccccccHHcccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccEEEEcccccccccHHHHHHHHHccEEEcccccccEEEEEEccccHHHHccc
Coil and Loop (DISEMBL)
mnfngvvannkkfcswtgsdslplqlpllsvseehticphatilnGMCVVCDklmddsygLCFDYIEKGLRYSIDEISRLKKRNTKNLLRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAgefssdkisrgndlfkikigdnvllvkLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKlldpdckyfnsriitrEDFKQKERKYLDLVlgqensivivddtesvwggrvENLITvgsydffkdkkkndcksyseqmsdesesDGALANILRALKAVHALyfdnpgnhaagrDVRSCLAKIRSRILMGctilfgdddfeelpltwsrAEEMGAICTLVTDASVTHVVSsntqsetfewae
Flexible Loop (DISEMBL)
MNFNGVVANNKKFCSWTGSDSLPLQLPLLSVSEEHTICPHATILNGMCVVCDKLMDDSYGLCFDYIEKGLRYSIDEISRLkkrntknllRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAaagefssdkisrgndlfkikigdnvllVKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVklldpdckyfnsriitredfkqKERKYLDlvlgqensivivddtesvwggrVENLitvgsydffkdkkkNDCKSYSEQMSDESESDGALANILRALKAVHALYFDNpgnhaagrdVRSCLAKIRSRILMGCTILFGDDDFEELPLTWSRAEEMGAICTLVTDASVTHVVssntqsetfewae
Low Complexity Region (SEG)
MNFNGVVANNKKFCSWTGSDslplqlpllsVSEEHTICPHATILNGMCVVCDKLMDDSYGLCFDYIEKGLRYSIDEISRLKKRNTKNLLRMRKlhlvldldhtllhSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKYLDLVLGQENSIVIVDDTESVWGGRVENLITVGSYdffkdkkkNDCKSYSEQMSDESESDGALANILRALKAVHALYFDNPGNHAAGRDVRSCLAKIRSRILMGCTILFGDDDFEELPLTWSRAEEMGAICTLVTDASVTHVVSSNTQSETFEWAE
Disordered region (IsUnstruct)
*****VVANNKKFCSWTGSDSLPLQLPLLSVSEEHTICPHATILNGMCVVCDKLMDDSYGLCFDYIEKGLRYSIDEISRLKKRNTKNLLRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEF**DKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKYLDLVLGQENSIVIVDDTESVWGGRVENLITVGSYDFFK***********************LANILRALKAVHALYFDNPGNHAAGRDVRSCLAKIRSRILMGCTILFGDDDFEELPLTWSRAEEMGAICTLVTDASVTHVV*************
Disordered Region (DISOPRED)
****GVVANNKKFCSWTGSDSLPLQLPLLSVSEEHTICPHATILNGMCVVCDKLMDDSYGLCFDYIEK**************************HLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKYLDLVLGQENSIVIVDDTESVWGGRVENLITVGSYDFFKDKKKNDCKSYSEQMSDESESDGALANILRALKAVHALYFDNPG*HAAGRDVRSCLAKIRSRILMGCTILFGDDDFEELPLTWSRAEEMGAICTLVTDASVTHVVSSNTQSETFEW**
Disordered Region (DISEMBL)
MNFNGVVANNKKFCSWTGSDSLPLQLPLLSVSEEHTICPHATILNGMCVVCDKLMDDSYGLCFDYIEKGLRYSIDEISRLKKRNTKNLLRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKYLDLVLGQENSIVIVDDTESVWGGRVENLITVGSYDFFKDKKKN****************GALANILRALKAVHALYFDNPGNHAAGRDVRSCLAKIRSRILMGCTILFGDDDFEELPLTWSRAEEMGAICTLVTDASVTHVVSSNTQSETFEWAE
Disordered Region (DISPRO)
**FNGVVANNKKFCSWTGSDSLPLQLPLLSVSEEHTICPHATILNGMCVVCDKLMDDSYGLCFDYIEKGLRYSIDEISRLKKRNTKNLLRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKYLDLVLGQENSIVIVDDTESVWGGRVENLITVGSYDFFKDKKKNDCKSYSE****ESESDGALANILRALKAVHALYFDNPGNHAAGRDVRSCLAKIRSRILMGCTILFGDDDFEELPLTWSRAEEMGAICTLVTDASVTHVVSSNTQSET*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNFNGVVANNKKFCSWTGSDSLPLQLPLLSVSEEHTICPHATILNGMCVVCDKLMDDSYGLCFDYIEKGLRYSIDEISRLKKRNTKNLLRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKYLDLVLGQENSIVIVDDTESVWGGRVENLITVGSYDFFKDKKKNDCKSYSEQMSDESESDGALANILRALKAVHALYFDNPGNHAAGRDVRSCLAKIRSRILMGCTILFGDDDFEELPLTWSRAEEMGAICTLVTDASVTHVVSSNTQSETFEWAE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	369	2.2.26 [Sep-21-2011]
Q00IB6	440	RNA polymerase II C-termi	yes	no	0.878	0.736	0.424	1e-68
Q8LL04	1241	RNA polymerase II C-termi	no	no	0.756	0.224	0.347	1e-34
Q9P376	723	RNA polymerase II subunit	yes	no	0.566	0.289	0.280	5e-20
Q8SV03	411	RNA polymerase II subunit	yes	no	0.607	0.545	0.290	2e-18
Q9Y5B0	961	RNA polymerase II subunit	no	no	0.523	0.200	0.278	2e-17
Q7TSG2	960	RNA polymerase II subunit	yes	no	0.523	0.201	0.278	3e-17
Q03254	732	RNA polymerase II subunit	yes	no	0.569	0.286	0.277	2e-13
Q08BB5	469	CTD small phosphatase-lik	no	no	0.403	0.317	0.307	1e-07
Q5XIK8	465	CTD small phosphatase-lik	no	no	0.403	0.320	0.302	2e-07
Q8BG15	465	CTD small phosphatase-lik	no	no	0.403	0.320	0.302	2e-07

>sp|Q00IB6|CPL4_ARATH RNA polymerase II C-terminal domain phosphatase-like 4 OS=Arabidopsis thaliana GN=CPL4 PE=1 SV=1

 Score =  260 bits (664), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 144/339 (42%), Positives = 207/339 (61%), Gaps = 15/339 (4%)

Query: 38  CPHATILNGMCVVCDKLMDDSYGLCFDYIEKGLRYSIDEISRLKKRNTKNLLRMRKLHLV 97
           C H      MC VC + ++++ G+ F YI K +R + DEISRL+  +++ L R RKL+LV
Sbjct: 68  CEHPGSFGNMCFVCGQKLEET-GVSFRYIHKEMRLNEDEISRLRDSDSRFLQRQRKLYLV 126

Query: 98  LDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRP 157
           LDLDHTLL++ ++  L  +E+YL+    +  +  +     G  LF ++     ++ KLRP
Sbjct: 127 LDLDHTLLNTTILRDLKPEEEYLKSHTHSLQDGCN---VSGGSLFLLEFMQ--MMTKLRP 181

Query: 158 FVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKYLDL 217
           FV SFL+EAS +F + + T+G+R YA +  KLLDP  +YF  R+I+R+D   +  K LD+
Sbjct: 182 FVHSFLKEASEMFVMYIYTMGDRNYARQMAKLLDPKGEYFGDRVISRDDGTVRHEKSLDV 241

Query: 218 VLGQENSIVIVDDTESVWGGRVENLITVGSYDFFKDKKK---NDCKSYSEQMSDESESDG 274
           VLGQE++++I+DDTE+ W    +NLI +  Y FF    +   +  KS SE  SDESE DG
Sbjct: 242 VLGQESAVLILDDTENAWPKHKDNLIVIERYHFFSSSCRQFDHRYKSLSELKSDESEPDG 301

Query: 275 ALANILRALKAVHALYFDNPGNHAAGRDVRSCLAKIRSRILMGCTILFG-----DDDFEE 329
           ALA +L+ LK  HAL+F+N     + RDVR  L ++R  IL GC I+F          E+
Sbjct: 302 ALATVLKVLKQAHALFFENVDEGISNRDVRLMLKQVRKEILKGCKIVFSRVFPTKAKPED 361

Query: 330 LPLTWSRAEEMGAICTLVTDASVTHVVSSNTQSETFEWA 368
            PL W  AEE+GA C    DASVTHVV+ +  +E   WA
Sbjct: 362 HPL-WKMAEELGATCATEVDASVTHVVAMDVGTEKARWA 399

Processively dephosphorylates 'Ser-2' and/or 'Ser-5' of the heptad repeats YSPTSPS in the C-terminal domain of the largest RNA polymerase II subunit (RPB1). This promotes the activity of RNA polymerase II (By similarity). Required for normal plant growth.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: 1EC: 6

>sp|Q8LL04|CPL3_ARATH RNA polymerase II C-terminal domain phosphatase-like 3 OS=Arabidopsis thaliana GN=CPL3 PE=1 SV=2

 Score =  147 bits (371), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 109/314 (34%), Positives = 167/314 (53%), Gaps = 35/314 (11%)

Query: 75   DEISRLKKRNTKNLLRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDK 134
            + + RL+++N   +   +KL LVLD+DHTLL+S    K    E   E+      E   +K
Sbjct: 911  ERVRRLEEQN--KMFASQKLSLVLDIDHTLLNS---AKFNEVESRHEEILRKKEEQDREK 965

Query: 135  ISRGNDLFK-IKIGDNVLLVKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPD 193
              R   LF+ + +G   +  KLRP + +FLE+AS+L+E+ + T+GN+ YAT   KLLDP 
Sbjct: 966  PYR--HLFRFLHMG---MWTKLRPGIWNFLEKASKLYELHLYTMGNKLYATEMAKLLDPK 1020

Query: 194  CKYFNSRIITREDF--------KQKERKYLDLVLGQENSIVIVDDTESVWGGRVENLITV 245
               FN R+I++ D         +  + K L+ V+G E+S+VI+DD+  VW     NLI V
Sbjct: 1021 GVLFNGRVISKGDDGDPLDGDERVPKSKDLEGVMGMESSVVIIDDSVRVWPQHKMNLIAV 1080

Query: 246  GSYDFFKDKKKND---CKSYSEQMSDESESDGALANILRALKAVHALYFDNPGNHAA--G 300
              Y +F   ++       S  E   DE   +G LA+ L  ++ +H  +F    +H +   
Sbjct: 1081 ERYLYFPCSRRQFGLLGPSLLELDRDEVPEEGTLASSLAVIEKIHQNFF----SHTSLDE 1136

Query: 301  RDVRSCLAKIRSRILMGCTILF------GDDDFEELPLTWSRAEEMGAICTLVTDASVTH 354
             DVR+ LA  + +IL GC I+F      G+      PL W  AE+ GA+CT   D  VTH
Sbjct: 1137 VDVRNILASEQRKILAGCRIVFSRIIPVGEAKPHLHPL-WQTAEQFGAVCTTQVDEHVTH 1195

Query: 355  VVSSNTQSETFEWA 368
            VV+++  ++   WA
Sbjct: 1196 VVTNSLGTDKVNWA 1209

Processively dephosphorylates 'Ser-2' and/or 'Ser-5' of the heptad repeats YSPTSPS in the C-terminal domain of the largest RNA polymerase II subunit (RPB1). This promotes the activity of RNA polymerase II (By similarity). Negative regulator of stress gene transcription involved in abscisic acid (ABA) mediated signaling pathway and cold resistance.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|Q9P376|FCP1_SCHPO RNA polymerase II subunit A C-terminal domain phosphatase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=fcp1 PE=1 SV=1

 Score = 99.0 bits (245), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 117/239 (48%), Gaps = 30/239 (12%)

Query: 31  VSEEHTICPHATILNGMCVVCDKLMDDSYGLCFDYIEKG----------LRYSIDEISRL 80
           V++ H  C H     G+C +C K +     + +  + +           L  S++E SRL
Sbjct: 92  VAKLHEPCTHEVNYGGLCAICGKNITSQDYMGYSDMARANISMTHNTGDLTVSLEEASRL 151

Query: 81  KKRNTKNLLRMRKLHLVLDLDHTLLHSRL---IGKLTSDEKYLEKAAAAAGEFSSDKISR 137
           +  N K L + ++L L++DLD T++H+ +   +G+  SD           G  + D + R
Sbjct: 152 ESENVKRLRQEKRLSLIVDLDQTIIHATVDPTVGEWMSD----------PGNVNYD-VLR 200

Query: 138 GNDLFKIKIGDN----VLLVKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPD 193
               F ++ G +       +K RP +  FL++ S L+E+ + T+G + YA    K++DP 
Sbjct: 201 DVRSFNLQEGPSGYTSCYYIKFRPGLAQFLQKISELYELHIYTMGTKAYAKEVAKIIDPT 260

Query: 194 CKYFNSRIITREDFKQKERKYLDLVLGQENS-IVIVDDTESVWGGRVENLITVGSYDFF 251
            K F  R+++R+D     +K L  +   + S +V++DD   VW     NLI V  Y+FF
Sbjct: 261 GKLFQDRVLSRDDSGSLAQKSLRRLFPCDTSMVVVIDDRGDVWDWN-PNLIKVVPYEFF 318

Processively dephosphorylates 'Ser-2' and 'Ser-5' of the heptad repeats YSPTSPS in the C-terminal domain of the largest RNA polymerase II subunit. This promotes the activity of RNA polymerase II.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|Q8SV03|FCP1_ENCCU RNA polymerase II subunit A C-terminal domain phosphatase OS=Encephalitozoon cuniculi (strain GB-M1) GN=FCP1 PE=1 SV=1

 Score = 94.0 bits (232), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 116/251 (46%), Gaps = 27/251 (10%)

Query: 38  CPHATILNGMCVVCD-KLMDDSYGLCFDYIEKGLRYSIDEISRLKKRNTKNLLRMRKLHL 96
           C H   L  +C VC  ++ ++S+  C  Y    ++ + +E   + K   + L    KL L
Sbjct: 4   CNHPIRLGTLCGVCGMEIQEESHLFCALYNTDNVKITHEEAVAIHKEKMEALEMQMKLIL 63

Query: 97  VLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLR 156
           VLDLD T+LH+           Y   +     +F  D+                  VKLR
Sbjct: 64  VLDLDQTVLHT----------TYGTSSLEGTVKFVIDRCR--------------YCVKLR 99

Query: 157 PFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKYLD 216
           P +   L   S+L+EI V T+G R YA R V+++DP  KYF+ RIITR++ +    K L 
Sbjct: 100 PNLDYMLRRISKLYEIHVYTMGTRAYAERIVEIIDPSGKYFDDRIITRDENQGVLVKRLS 159

Query: 217 LVLGQEN-SIVIVDDTESVWGGRVENLITVGSYDFFKDKKKNDCKSYSEQMSDESESDGA 275
            +   ++ +IVI+DD   VW    ENL+ +  + +F     ND      ++  E+  + A
Sbjct: 160 RLFPHDHRNIVILDDRPDVW-DYCENLVLIRPFWYFNRVDINDPLRLKRKIEKEAGENKA 218

Query: 276 LANILRALKAV 286
           L   +   K +
Sbjct: 219 LEEFVSKRKKI 229

Processively dephosphorylates 'Ser-2' and 'Ser-5' of the heptad repeats YSPTSPS in the C-terminal domain of the largest RNA polymerase II subunit (RPB1). This promotes the activity of RNA polymerase II.

Encephalitozoon cuniculi (strain GB-M1) (taxid: 284813)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|Q9Y5B0|CTDP1_HUMAN RNA polymerase II subunit A C-terminal domain phosphatase OS=Homo sapiens GN=CTDP1 PE=1 SV=3

 Score = 90.5 bits (223), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 112/233 (48%), Gaps = 40/233 (17%)

Query: 38  CPHATILNGMCVVCDK---------------LMDDSYGLCFDYIEKGLRYSIDEISRLKK 82
           C H  ++ G+C  C +               L   +  +     E  L  S ++  +L +
Sbjct: 114 CSHPVVMKGLCAECGQDLTQLQSKNGKQQVPLSTATVSMVHSVPE--LMVSSEQAEQLGR 171

Query: 83  RNTKNLLRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLF 142
            + + L R RKL L++DLD TL+H+         E++ ++ +           ++G   F
Sbjct: 172 EDQQRLHRNRKLVLMVDLDQTLIHT--------TEQHCQQMS-----------NKGIFHF 212

Query: 143 KIKIGDNVLLVKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRII 202
           ++  G+ +L  +LRP  + FLE+ ++L+E+ V T G+R YA      LDP+ K F+ RI+
Sbjct: 213 QLGRGEPMLHTRLRPHCKDFLEKIAKLYELHVFTFGSRLYAHTIAGFLDPEKKLFSHRIL 272

Query: 203 TRE---DFKQKERKYLDLVLGQENSIVIVDDTESVWGGRVENLITVGSYDFFK 252
           +R+   D   K     +L    ++ + I+DD E VW     NLITV  Y +F+
Sbjct: 273 SRDECIDPFSKTGNLRNLFPCGDSMVCIIDDREDVW-KFAPNLITVKKYVYFQ 324

Processively dephosphorylates 'Ser-2' and 'Ser-5' of the heptad repeats YSPTSPS in the C-terminal domain of the largest RNA polymerase II subunit. This promotes the activity of RNA polymerase II.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|Q7TSG2|CTDP1_MOUSE RNA polymerase II subunit A C-terminal domain phosphatase OS=Mus musculus GN=Ctdp1 PE=1 SV=1

 Score = 89.7 bits (221), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 110/233 (47%), Gaps = 40/233 (17%)

Query: 38  CPHATILNGMCVVCDK---------------LMDDSYGLCFDYIEKGLRYSIDEISRLKK 82
           C H  ++ G+C  C +               L   +  +     E  L  S ++  +L +
Sbjct: 114 CSHPVVMKGLCAECGQDLTQLQSKNGRQQVPLSTATVSMVHSVPE--LMVSSEQAEKLGR 171

Query: 83  RNTKNLLRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLF 142
            + + L R RKL L++DLD TL+H+         E++  + +           ++G   F
Sbjct: 172 EDQQRLHRNRKLVLMVDLDQTLIHT--------TEQHCPQMS-----------NKGIFHF 212

Query: 143 KIKIGDNVLLVKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRII 202
           ++  G+ +L  +LRP  + FLE+ ++L+E+ V T G+R YA      LDP+ K F+ RI+
Sbjct: 213 QLGRGEPMLHTRLRPHCKDFLEKIAKLYELHVFTFGSRLYAHTIAGFLDPEKKLFSHRIL 272

Query: 203 TRE---DFKQKERKYLDLVLGQENSIVIVDDTESVWGGRVENLITVGSYDFFK 252
           +R+   D   K     +L    ++ + I+DD E VW     NLITV  Y +F 
Sbjct: 273 SRDECIDPFSKTGNLRNLFPCGDSMVCIIDDREDVW-KFAPNLITVKKYVYFP 324

Processively dephosphorylates 'Ser-2' and 'Ser-5' of the heptad repeats YSPTSPS in the C-terminal domain of the largest RNA polymerase II subunit. This promotes the activity of RNA polymerase II.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|Q03254|FCP1_YEAST RNA polymerase II subunit A C-terminal domain phosphatase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FCP1 PE=1 SV=1

 Score = 77.0 bits (188), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 110/234 (47%), Gaps = 24/234 (10%)

Query: 38  CPHATILNGMCVVCDKLMD-DSY-GLCFDYI-EKGLRYSIDEISRLKKRNTKNLLRMRKL 94
           C H  +  G+C  C K +  D++ G+  D + +  L+ S  E  R  K   ++L R +KL
Sbjct: 116 CNHDIVYGGLCTQCGKEVSADAFDGVPLDVVGDVDLQISETEAIRTGKALKEHLRRDKKL 175

Query: 95  HLVLDLDHTLLH---SRLIGKLTSDEK-------------YLEKAAAAAGEFSSDKISRG 138
            LV+DLD T++H      I +  +D                L++       + +D    G
Sbjct: 176 ILVVDLDQTIIHCGVDPTIAEWKNDPNNPNFETLRDVKSFTLDEELVLPLMYMNDD---G 232

Query: 139 NDLFKIKIGDNVLLVKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFN 198
           + L    +      VK+RP ++ F  + + LFE+ + T+  R YA +  K++DP  + F 
Sbjct: 233 SMLRPPPVRKCWYYVKVRPGLKEFFAKVAPLFEMHIYTMATRAYALQIAKIVDPTGELFG 292

Query: 199 SRIITREDFKQKERKYLDLVLGQENS-IVIVDDTESVWGGRVENLITVGSYDFF 251
            RI++R++      K L  +   + S +V++DD   VW     NLI V  Y+FF
Sbjct: 293 DRILSRDENGSLTTKSLAKLFPTDQSMVVVIDDRGDVWNW-CPNLIKVVPYNFF 345

Processively dephosphorylates 'Ser-2' and 'Ser-5' of the heptad repeats YSPTSPS in the C-terminal domain of the largest RNA polymerase II subunit (RPB1). This promotes the activity of RNA polymerase II.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|Q08BB5|CTL2A_DANRE CTD small phosphatase-like protein 2-A OS=Danio rerio GN=ctdspl2a PE=2 SV=1

 Score = 57.8 bits (138), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 87/182 (47%), Gaps = 33/182 (18%)

Query: 80  LKKRNTKNLLRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGN 139
           LK R+T       +  LVLDLD TL+H  L          LE AA        D I +  
Sbjct: 283 LKTRSTP------EFSLVLDLDETLVHCSL--------NELEDAALTFPVLFQDVIYQ-- 326

Query: 140 DLFKIKIGDNVLLVKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNS 199
                      + V+LRPF R FLE  S+++EI + T   + YA + + +LDP  +    
Sbjct: 327 -----------VYVRLRPFFREFLERMSQIYEIILFTASKKVYADKLLNILDPKKQLVRH 375

Query: 200 RIITREDFKQKERKYL-DL-VLGQE-NSIVIVDDTESVWGGRVENLITVGSYDFFKDKKK 256
           R+  RE     +  Y+ DL +LG++ +  VI+D++   +  ++ N I + S+  F DK  
Sbjct: 376 RLF-REHCVCVQGNYIKDLNILGRDLSKTVIIDNSPQAFAYQLSNGIPIESW--FVDKND 432

Query: 257 ND 258
           N+
Sbjct: 433 NE 434

Probable phosphatase.

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: -

>sp|Q5XIK8|CTSL2_RAT CTD small phosphatase-like protein 2 OS=Rattus norvegicus GN=Ctdspl2 PE=2 SV=1

 Score = 57.0 bits (136), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 87/182 (47%), Gaps = 33/182 (18%)

Query: 80  LKKRNTKNLLRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGN 139
           LK R+T       +  LVLDLD TL+H  L          LE AA        D I +  
Sbjct: 279 LKTRSTP------EFSLVLDLDETLVHCSL--------NELEDAALTFPVLFQDVIYQ-- 322

Query: 140 DLFKIKIGDNVLLVKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNS 199
                      + V+LRPF R FLE  S+++EI + T   + YA + + +LDP  +    
Sbjct: 323 -----------VYVRLRPFFREFLERMSQMYEIILFTASKKVYADKLLNILDPKKQLVRH 371

Query: 200 RIITREDFKQKERKYL-DL-VLGQE-NSIVIVDDTESVWGGRVENLITVGSYDFFKDKKK 256
           R+  RE     +  Y+ DL +LG++ +  +I+D++   +  ++ N I + S+  F DK  
Sbjct: 372 RLF-REHCVCVQGNYIKDLNILGRDLSKTIIIDNSPQAFAYQLSNGIPIESW--FMDKND 428

Query: 257 ND 258
           N+
Sbjct: 429 NE 430

Probable phosphatase.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: -

>sp|Q8BG15|CTSL2_MOUSE CTD small phosphatase-like protein 2 OS=Mus musculus GN=Ctdspl2 PE=1 SV=1

 Score = 57.0 bits (136), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 87/182 (47%), Gaps = 33/182 (18%)

Query: 80  LKKRNTKNLLRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGN 139
           LK R+T       +  LVLDLD TL+H  L          LE AA        D I +  
Sbjct: 279 LKTRSTP------EFSLVLDLDETLVHCSL--------NELEDAALTFPVLFQDVIYQ-- 322

Query: 140 DLFKIKIGDNVLLVKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNS 199
                      + V+LRPF R FLE  S+++EI + T   + YA + + +LDP  +    
Sbjct: 323 -----------VYVRLRPFFREFLERMSQMYEIILFTASKKVYADKLLNILDPKKQLVRH 371

Query: 200 RIITREDFKQKERKYL-DL-VLGQE-NSIVIVDDTESVWGGRVENLITVGSYDFFKDKKK 256
           R+  RE     +  Y+ DL +LG++ +  +I+D++   +  ++ N I + S+  F DK  
Sbjct: 372 RLF-REHCVCVQGNYIKDLNILGRDLSKTIIIDNSPQAFAYQLSNGIPIESW--FMDKND 428

Query: 257 ND 258
           N+
Sbjct: 429 NE 430

Probable phosphatase.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	369
255570505	478	RNA polymerase II ctd phosphatase, putat	0.891	0.688	0.425	5e-72
356564913	442	PREDICTED: RNA polymerase II C-terminal	0.899	0.751	0.433	5e-70
356498756	428	PREDICTED: RNA polymerase II C-terminal	0.875	0.754	0.435	9e-70
449447765	452	PREDICTED: RNA polymerase II C-terminal	0.899	0.734	0.414	2e-68
9758369	1065	unnamed protein product [Arabidopsis tha	0.878	0.304	0.424	6e-67
145334837	440	RNA polymerase II C-terminal domain phos	0.878	0.736	0.424	8e-67
413945235	533	CPL3 [Zea mays]	0.940	0.651	0.404	9e-65
226497696	531	CPL3 [Zea mays] gi|195656359|gb|ACG47647	0.940	0.653	0.404	1e-64
242093742	558	hypothetical protein SORBIDRAFT_10g02558	0.926	0.612	0.404	1e-63
242087817	547	hypothetical protein SORBIDRAFT_09g01931	0.929	0.627	0.402	3e-63

>gi|255570505|ref|XP_002526210.1| RNA polymerase II ctd phosphatase, putative [Ricinus communis] gi|223534449|gb|EEF36151.1| RNA polymerase II ctd phosphatase, putative [Ricinus communis]

 Score =  277 bits (709), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 149/350 (42%), Positives = 216/350 (61%), Gaps = 21/350 (6%)

Query: 29  LSVSEEHTICPHATILNGMCVVCDKLMDDSYGLCFDYIEKGLRYSIDEISRLKKRNTKNL 88
           L  S     C H      MC++C + + +  G+ F YI KGLR + DEI RL+  + KNL
Sbjct: 102 LVASSSKVACTHPGSFGDMCILCGERLIEETGVTFGYIHKGLRLANDEIVRLRNTDMKNL 161

Query: 89  LRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGD 148
           LR RKL+LVLDLDHTLL+S  +  LT++E+YL+         S   +S G+ LF +    
Sbjct: 162 LRHRKLYLVLDLDHTLLNSTQLMHLTAEEEYLKSQID-----SMQDVSNGS-LFMVDFMH 215

Query: 149 NVLLVKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFK 208
             ++ KLRPF+R+FL+EAS++FE+ + T+G+R YA    K LDP  +YFN+R+I+R+D  
Sbjct: 216 --MMTKLRPFIRTFLKEASQMFEMYIYTMGDRAYALEMAKFLDPGREYFNARVISRDDGT 273

Query: 209 QKERKYLDLVLGQENSIVIVDDTESVWGGRVENLITVGSYDFFKDKKKN---DCKSYSEQ 265
           Q+ +K LD+VLGQE++++I+DDTE+ W    +NLI +  Y FF    +    +CKS S+ 
Sbjct: 274 QRHQKGLDIVLGQESAVLILDDTENAWTKHKDNLILMERYHFFASSCRQFGFECKSLSQL 333

Query: 266 MSDESESDGALANILRALKAVHALYFDNPGNHAAGRDVRSCLAKIRSRILMGCTILFG-- 323
            SDE+ESDGALA++L+ L+ +H ++FD   +   GRDVR  L+ +R  +L GC I+F   
Sbjct: 334 KSDENESDGALASVLKVLRRIHHIFFDELEDAIDGRDVRQVLSTVRKDVLKGCKIVFSRV 393

Query: 324 -----DDDFEELPLTWSRAEEMGAICTLVTDASVTHVVSSNTQSETFEWA 368
                  D   L   W  AE++GA C+   D SVTHVVS+   +E   WA
Sbjct: 394 FPTQFQADNHHL---WKMAEQLGATCSREVDPSVTHVVSAEAGTEKSRWA 440

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564913|ref|XP_003550691.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4-like [Glycine max]

 Score =  271 bits (692), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 149/344 (43%), Positives = 213/344 (61%), Gaps = 12/344 (3%)

Query: 28  LLSVSEEHTICPHATILNGMCVVCDKLMDDSYGLCFDYIEKGLRYSIDEISRLKKRNTKN 87
           L + SE    C H      MC+ C + +D   G+ F YI KGLR   +EISRL+  + K+
Sbjct: 74  LEASSEVDVCCTHPGSFGNMCIRCGQKLDGESGVTFGYIHKGLRLHDEEISRLRNTDMKS 133

Query: 88  LLRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIG 147
           LL  +KL+LVLDLDHTLL+S  + +LTS+E +L          S   +S+G+ LFK++  
Sbjct: 134 LLGRKKLYLVLDLDHTLLNSTHLAQLTSEELHLLNQTD-----SLTNVSKGS-LFKLEHM 187

Query: 148 DNVLLVKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDF 207
           +  ++ KLRPFVR FL+EAS +FE+ + T+G+R YA    KLLDP  +YFN+++I+R+D 
Sbjct: 188 N--MMTKLRPFVRPFLKEASEMFEMYIYTMGDRPYALEMAKLLDPQGEYFNAKVISRDDG 245

Query: 208 KQKERKYLDLVLGQENSIVIVDDTESVWGGRVENLITVGSYDFFKDKKKN---DCKSYSE 264
            QK +K LD+VLGQE++++I+DDTE  W    +NLI +  Y FF    +    +CKS +E
Sbjct: 246 TQKHQKGLDVVLGQESAVIILDDTEHAWMKHKDNLILMERYHFFGSSCRQFGFNCKSLAE 305

Query: 265 QMSDESESDGALANILRALKAVHALYFDNPGNHAAGRDVRSCLAKIRSRILMGCTILFGD 324
             SDE E+DGALA IL+ LK VH ++FD   +    +DVR  L+ +R  +L GC I+F  
Sbjct: 306 LKSDEDETDGALAKILKVLKQVHCMFFDKQEDF-DDQDVRQVLSSVRREVLSGCVIIFSR 364

Query: 325 DDFEELPLTWSRAEEMGAICTLVTDASVTHVVSSNTQSETFEWA 368
                +P     AE+MGA C    D SVTHVV+++  +E   WA
Sbjct: 365 IVHGAIPSLRKMAEQMGATCLTEIDPSVTHVVATDAGTEKCRWA 408

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498756|ref|XP_003518215.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4-like [Glycine max]

 Score =  270 bits (690), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 146/335 (43%), Positives = 211/335 (62%), Gaps = 12/335 (3%)

Query: 37  ICPHATILNGMCVVCDKLMDDSYGLCFDYIEKGLRYSIDEISRLKKRNTKNLLRMRKLHL 96
           +C H      MC+ C + +D   G+ F YI KGLR   +EISRL+  + K+LL  +KL+L
Sbjct: 69  VCTHPGSFGNMCIRCGQKLDGESGVTFGYIHKGLRLHDEEISRLRNTDMKSLLCRKKLYL 128

Query: 97  VLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLR 156
           VLDLDHTLL+S  +  LTS+E +L     +  +     +S+G+ LFK++  +  ++ KLR
Sbjct: 129 VLDLDHTLLNSTHLAHLTSEESHLLNQTDSLRD-----VSKGS-LFKLEHMN--MMTKLR 180

Query: 157 PFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKYLD 216
           PFVR FL+EAS +FE+ + T+G+R YA    KLLDP  +YFN+++I+R+D  QK +K LD
Sbjct: 181 PFVRPFLKEASEMFEMYIYTMGDRPYALEMAKLLDPQGEYFNAKVISRDDGTQKHQKGLD 240

Query: 217 LVLGQENSIVIVDDTESVWGGRVENLITVGSYDFFKDKKKN---DCKSYSEQMSDESESD 273
           +VLGQE++++I+DDTE  W    +NLI +  Y FF    +    +CKS +E  SDE+E+D
Sbjct: 241 VVLGQESAVLILDDTEHAWMKHKDNLILMERYHFFGSSCRQFGFNCKSLAELKSDENETD 300

Query: 274 GALANILRALKAVHALYFDNPGNHAAGRDVRSCLAKIRSRILMGCTILFGDDDFEELPLT 333
           GALA IL+ LK VH ++FD   +    RDVR  L+ +R  +L GC I+F       +P  
Sbjct: 301 GALAKILKVLKQVHCMFFDKQEDF-DDRDVRQMLSLVRREVLSGCVIIFSRIVHGAIPSL 359

Query: 334 WSRAEEMGAICTLVTDASVTHVVSSNTQSETFEWA 368
              AE+MGA C    D SVTHVV+++  +E   WA
Sbjct: 360 RKMAEQMGATCLTEIDPSVTHVVATDAGTEKCRWA 394

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447765|ref|XP_004141638.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4-like [Cucumis sativus]

 Score =  265 bits (678), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 144/347 (41%), Positives = 211/347 (60%), Gaps = 15/347 (4%)

Query: 29  LSVSEEHTICPHATILNGMCVVCDKLMDDSYGLCFDYIEKGLRYSIDEISRLKKRNTKNL 88
           L V  +  +C H      MC++C + +D+  G+ F YI K LR + DEI+R++ +  K L
Sbjct: 73  LEVLSKQQLCSHPGSFGNMCIICGQRLDEESGVTFGYIHKELRLNNDEINRMRNKEMKEL 132

Query: 89  LRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGD 148
           L+ +KL LVLDLDHTLL+S  +  LT +E+YL          S D +++G+ LF +    
Sbjct: 133 LQRKKLILVLDLDHTLLNSTELRYLTVEEEYLRSQTD-----SLDDVTKGS-LFLLNSVH 186

Query: 149 NVLLVKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFK 208
              + KLRPFV SFL+EAS+LFE+ + T+G R YA    KLLDP  +YF+S++I+R+D  
Sbjct: 187 T--MTKLRPFVHSFLKEASKLFEMYIYTMGERRYAFEMAKLLDPKKEYFSSKVISRDDGT 244

Query: 209 QKERKYLDLVLGQENSIVIVDDTESVWGGRVENLITVGSYDFFKDKKKN---DCKSYSEQ 265
           QK +K LD+VLG+E++++I+DDTE+ W    ENLI +  Y FF    +    +CKS SE 
Sbjct: 245 QKHQKGLDVVLGKESAVLILDDTENAWTKHKENLILMERYHFFASSCRQFGFNCKSLSEL 304

Query: 266 MSDESESDGALANILRALKAVHALYFDNPGNHAAGRDVRSCLAKIRSRILMGCTILFG-- 323
            +DESE+DGAL  IL+ LK VH ++F+        RDVR  L  +R+ +L GC ++F   
Sbjct: 305 KNDESETDGALTTILKVLKQVHHMFFNEVSGDLVDRDVRQVLKTVRAEVLEGCKVVFSRV 364

Query: 324 -DDDFE-ELPLTWSRAEEMGAICTLVTDASVTHVVSSNTQSETFEWA 368
               F+ E    W   E++G  C+   D SVTHVV+++  +E   WA
Sbjct: 365 FPTKFQAENHQLWKMVEQLGGTCSTELDQSVTHVVATDAGTEKSRWA 411

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9758369|dbj|BAB08870.1| unnamed protein product [Arabidopsis thaliana]

 Score =  260 bits (665), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 144/339 (42%), Positives = 207/339 (61%), Gaps = 15/339 (4%)

Query: 38   CPHATILNGMCVVCDKLMDDSYGLCFDYIEKGLRYSIDEISRLKKRNTKNLLRMRKLHLV 97
            C H      MC VC + ++++ G+ F YI K +R + DEISRL+  +++ L R RKL+LV
Sbjct: 693  CEHPGSFGNMCFVCGQKLEET-GVSFRYIHKEMRLNEDEISRLRDSDSRFLQRQRKLYLV 751

Query: 98   LDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRP 157
            LDLDHTLL++ ++  L  +E+YL+    +  +  +     G  LF ++     ++ KLRP
Sbjct: 752  LDLDHTLLNTTILRDLKPEEEYLKSHTHSLQDGCN---VSGGSLFLLEFMQ--MMTKLRP 806

Query: 158  FVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKYLDL 217
            FV SFL+EAS +F + + T+G+R YA +  KLLDP  +YF  R+I+R+D   +  K LD+
Sbjct: 807  FVHSFLKEASEMFVMYIYTMGDRNYARQMAKLLDPKGEYFGDRVISRDDGTVRHEKSLDV 866

Query: 218  VLGQENSIVIVDDTESVWGGRVENLITVGSYDFFKDKKK---NDCKSYSEQMSDESESDG 274
            VLGQE++++I+DDTE+ W    +NLI +  Y FF    +   +  KS SE  SDESE DG
Sbjct: 867  VLGQESAVLILDDTENAWPKHKDNLIVIERYHFFSSSCRQFDHRYKSLSELKSDESEPDG 926

Query: 275  ALANILRALKAVHALYFDNPGNHAAGRDVRSCLAKIRSRILMGCTILFG-----DDDFEE 329
            ALA +L+ LK  HAL+F+N     + RDVR  L ++R  IL GC I+F          E+
Sbjct: 927  ALATVLKVLKQAHALFFENVDEGISNRDVRLMLKQVRKEILKGCKIVFSRVFPTKAKPED 986

Query: 330  LPLTWSRAEEMGAICTLVTDASVTHVVSSNTQSETFEWA 368
             PL W  AEE+GA C    DASVTHVV+ +  +E   WA
Sbjct: 987  HPL-WKMAEELGATCATEVDASVTHVVAMDVGTEKARWA 1024

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145334837|ref|NP_001078764.1| RNA polymerase II C-terminal domain phosphatase-like 4 [Arabidopsis thaliana] gi|122154038|sp|Q00IB6.1|CPL4_ARATH RecName: Full=RNA polymerase II C-terminal domain phosphatase-like 4; Short=FCP-like 4; AltName: Full=Carboxyl-terminal phosphatase-like 4; Short=AtCPL4; Short=CTD phosphatase-like 4 gi|95115186|gb|ABF55959.1| carboxyl-terminal phosphatase-like 4 [Arabidopsis thaliana] gi|332009601|gb|AED96984.1| RNA polymerase II C-terminal domain phosphatase-like 4 [Arabidopsis thaliana]

 Score =  260 bits (664), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 144/339 (42%), Positives = 207/339 (61%), Gaps = 15/339 (4%)

Query: 38  CPHATILNGMCVVCDKLMDDSYGLCFDYIEKGLRYSIDEISRLKKRNTKNLLRMRKLHLV 97
           C H      MC VC + ++++ G+ F YI K +R + DEISRL+  +++ L R RKL+LV
Sbjct: 68  CEHPGSFGNMCFVCGQKLEET-GVSFRYIHKEMRLNEDEISRLRDSDSRFLQRQRKLYLV 126

Query: 98  LDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRP 157
           LDLDHTLL++ ++  L  +E+YL+    +  +  +     G  LF ++     ++ KLRP
Sbjct: 127 LDLDHTLLNTTILRDLKPEEEYLKSHTHSLQDGCN---VSGGSLFLLEFMQ--MMTKLRP 181

Query: 158 FVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKYLDL 217
           FV SFL+EAS +F + + T+G+R YA +  KLLDP  +YF  R+I+R+D   +  K LD+
Sbjct: 182 FVHSFLKEASEMFVMYIYTMGDRNYARQMAKLLDPKGEYFGDRVISRDDGTVRHEKSLDV 241

Query: 218 VLGQENSIVIVDDTESVWGGRVENLITVGSYDFFKDKKK---NDCKSYSEQMSDESESDG 274
           VLGQE++++I+DDTE+ W    +NLI +  Y FF    +   +  KS SE  SDESE DG
Sbjct: 242 VLGQESAVLILDDTENAWPKHKDNLIVIERYHFFSSSCRQFDHRYKSLSELKSDESEPDG 301

Query: 275 ALANILRALKAVHALYFDNPGNHAAGRDVRSCLAKIRSRILMGCTILFG-----DDDFEE 329
           ALA +L+ LK  HAL+F+N     + RDVR  L ++R  IL GC I+F          E+
Sbjct: 302 ALATVLKVLKQAHALFFENVDEGISNRDVRLMLKQVRKEILKGCKIVFSRVFPTKAKPED 361

Query: 330 LPLTWSRAEEMGAICTLVTDASVTHVVSSNTQSETFEWA 368
            PL W  AEE+GA C    DASVTHVV+ +  +E   WA
Sbjct: 362 HPL-WKMAEELGATCATEVDASVTHVVAMDVGTEKARWA 399

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413945235|gb|AFW77884.1| CPL3 [Zea mays]

 Score =  253 bits (646), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 148/366 (40%), Positives = 207/366 (56%), Gaps = 19/366 (5%)

Query: 14  CSWTGSDSLPLQLPL-LSVSEEHTICPHATILNGMCVVCDKLMD--DSYGLCFDYIEKGL 70
           C   G+   P ++P   S   +   CPH     G+C++C K  D  D  G+ F YI KGL
Sbjct: 80  CQDQGTSVRPDKIPTGASKIVQVEACPHPGHFGGLCIICGKPQDEEDVSGVAFGYIHKGL 139

Query: 71  RYSIDEISRLKKRNTKNLLRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEF 130
           R    EI RL+  + KNLLR RKL L+LDLDHTL++S  +  ++S EK L   +AA    
Sbjct: 140 RLGTSEIDRLRGADLKNLLRERKLVLILDLDHTLINSTKLQDISSAEKDLGIQSAA---- 195

Query: 131 SSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLL 190
           S D  +R   +F + +    +L KLRPFVR FL+EAS +FE+ + T+G++ YA    KLL
Sbjct: 196 SKDDPNRS--IFALDL--MPMLTKLRPFVREFLKEASNMFEMYIYTMGDKAYAIEIAKLL 251

Query: 191 DPDCKYFNSRIITREDFKQKERKYLDLVLGQENSIVIVDDTESVWGGRVENLITVGSYDF 250
           DP   YF S++I+  D  Q+ +K LD++LG E+  VI+DDTE VW    ENLI +  Y F
Sbjct: 252 DPSNIYFPSKVISNSDCTQRHQKGLDVILGAESVAVILDDTEYVWQKHKENLILMERYHF 311

Query: 251 FKDKKKN---DCKSYSEQMSDESESDGALANILRALKAVHALYFDNPG-NHAAGRDVRSC 306
           F    +      +S SE + DE ESDGALA +L  LK +HA +FD       + RD+R  
Sbjct: 312 FASSCRQFGFGVRSLSESLQDERESDGALATVLDVLKRIHATFFDMAAETDLSSRDIRQV 371

Query: 307 LAKIRSRILMGCTILFG----DDDFEELPLTWSRAEEMGAICTLVTDASVTHVVSSNTQS 362
           +  +R  IL GC I+F     ++   +  + W  AE +GA+C    D SVTHVV+ +  +
Sbjct: 372 IKTLRKEILQGCKIVFSRVFPNNTRPQEQMVWKMAEYLGAVCVKDVDPSVTHVVTVDLGT 431

Query: 363 ETFEWA 368
           E   W 
Sbjct: 432 EKARWG 437

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226497696|ref|NP_001152445.1| CPL3 [Zea mays] gi|195656359|gb|ACG47647.1| CPL3 [Zea mays]

 Score =  253 bits (646), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 148/366 (40%), Positives = 207/366 (56%), Gaps = 19/366 (5%)

Query: 14  CSWTGSDSLPLQLPL-LSVSEEHTICPHATILNGMCVVCDKLMD--DSYGLCFDYIEKGL 70
           C   G+   P ++P   S   +   CPH     G+C++C K  D  D  G+ F YI KGL
Sbjct: 78  CQDQGTSVRPDKIPTGASKIVQVEACPHPGHFGGLCIICGKPQDEEDVSGVAFGYIHKGL 137

Query: 71  RYSIDEISRLKKRNTKNLLRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEF 130
           R    EI RL+  + KNLLR RKL L+LDLDHTL++S  +  ++S EK L   +AA    
Sbjct: 138 RLGTSEIDRLRGADLKNLLRERKLVLILDLDHTLINSTKLQDISSAEKDLGIQSAA---- 193

Query: 131 SSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLL 190
           S D  +R   +F + +    +L KLRPFVR FL+EAS +FE+ + T+G++ YA    KLL
Sbjct: 194 SKDDPNRS--IFALDL--MPMLTKLRPFVREFLKEASNMFEMYIYTMGDKAYAIEIAKLL 249

Query: 191 DPDCKYFNSRIITREDFKQKERKYLDLVLGQENSIVIVDDTESVWGGRVENLITVGSYDF 250
           DP   YF S++I+  D  Q+ +K LD++LG E+  VI+DDTE VW    ENLI +  Y F
Sbjct: 250 DPSNIYFPSKVISNSDCTQRHQKGLDVILGAESVAVILDDTEYVWQKHKENLILMERYHF 309

Query: 251 FKDKKKN---DCKSYSEQMSDESESDGALANILRALKAVHALYFDNPG-NHAAGRDVRSC 306
           F    +      +S SE + DE ESDGALA +L  LK +HA +FD       + RD+R  
Sbjct: 310 FASSCRQFGFGVRSLSESLQDERESDGALATVLDVLKRIHATFFDMAAETDLSSRDIRQV 369

Query: 307 LAKIRSRILMGCTILFG----DDDFEELPLTWSRAEEMGAICTLVTDASVTHVVSSNTQS 362
           +  +R  IL GC I+F     ++   +  + W  AE +GA+C    D SVTHVV+ +  +
Sbjct: 370 IKTLRKEILQGCKIVFSRVFPNNTRPQEQMVWKMAEYLGAVCVKDVDPSVTHVVTVDLGT 429

Query: 363 ETFEWA 368
           E   W 
Sbjct: 430 EKSRWG 435

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242093742|ref|XP_002437361.1| hypothetical protein SORBIDRAFT_10g025580 [Sorghum bicolor] gi|241915584|gb|EER88728.1| hypothetical protein SORBIDRAFT_10g025580 [Sorghum bicolor]

 Score =  249 bits (637), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 147/363 (40%), Positives = 209/363 (57%), Gaps = 21/363 (5%)

Query: 18  GSDSLPLQLPL-LSVSEEHTICPHATILNGMCVVCDKLMDDS--YGLCFDYIEKGLRYSI 74
           G+   P ++P   S + +   CPH     G+C  C K  D+    G+ F YI KGLR   
Sbjct: 86  GTSVRPDKIPTGASKNVQVEACPHPGYFGGLCFRCGKPQDEENVSGVAFGYIHKGLRLGT 145

Query: 75  DEISRLKKRNTKNLLRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDK 134
            EI RL+  + KNLLR RKL L+LDLDHTL++S  +  ++S EK L    AA    S D 
Sbjct: 146 SEIDRLRGADLKNLLRERKLVLILDLDHTLINSTKLQDISSAEKDLGIQTAA----SKDD 201

Query: 135 ISRGNDLFKIKIGDNV-LLVKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPD 193
            +R   +F +   D++ +L KLRPFVR FL+EAS +FE+ + T+G++ YA    KLLDP 
Sbjct: 202 PNRS--IFSL---DSMQMLTKLRPFVREFLKEASNMFEMYIYTMGDKAYAIEIAKLLDPS 256

Query: 194 CKYFNSRIITREDFKQKERKYLDLVLGQENSIVIVDDTESVWGGRVENLITVGSYDFFKD 253
             YF S++I+  D  Q+ +K LD++LG E+  VI+DDTE VW    ENLI +  Y FF  
Sbjct: 257 NIYFPSKVISNSDCTQRHQKGLDVILGAESVAVILDDTEYVWQKHKENLILMERYHFFAS 316

Query: 254 KKKN---DCKSYSEQMSDESESDGALANILRALKAVHALYFD-NPGNHAAGRDVRSCLAK 309
             +      +S SE M DE ESDGALA +L  LK +H+++FD       + +DVR  +  
Sbjct: 317 SCRQFGFGVRSLSESMQDERESDGALATVLDVLKRIHSIFFDLAVETDLSSQDVRQVIKA 376

Query: 310 IRSRILMGCTILFG----DDDFEELPLTWSRAEEMGAICTLVTDASVTHVVSSNTQSETF 365
           +R  IL GC I+F     ++   +  + W  AE +GA+C+   D+SVTHVV+ +  +E  
Sbjct: 377 VRKEILQGCKIVFSRVFPNNTRPQEQMLWKMAEHLGAVCSTDVDSSVTHVVTVDLGTEKA 436

Query: 366 EWA 368
            W 
Sbjct: 437 RWG 439

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242087817|ref|XP_002439741.1| hypothetical protein SORBIDRAFT_09g019310 [Sorghum bicolor] gi|241945026|gb|EES18171.1| hypothetical protein SORBIDRAFT_09g019310 [Sorghum bicolor]

 Score =  248 bits (633), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 146/363 (40%), Positives = 209/363 (57%), Gaps = 20/363 (5%)

Query: 18  GSDSLPLQLPL-LSVSEEHTICPHATILNGMCVVCDKLMDDSY--GLCFDYIEKGLRYSI 74
           G+   P ++P   S + +   CPH   + G+C +C    D+ Y  G+  DYI+KGLR   
Sbjct: 88  GTSVRPDKIPTGASKNIQVEACPHPGYIRGLCYICGNPQDEEYISGVALDYIDKGLRLRT 147

Query: 75  DEISRLKKRNTKNLLRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDK 134
            EI RL+  + KNLLR RKL L+LDLDHTL++S  +  ++S EK L    AA    S D 
Sbjct: 148 SEIDRLRCADLKNLLRERKLVLILDLDHTLINSTKLQNISSAEKDLGIQTAA----SKDD 203

Query: 135 ISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDC 194
            +R   +F ++     LL KLRPFVR FL+EAS +FE+ + T+G++ YA    KLLDP  
Sbjct: 204 PNRS--IFALE--SMQLLTKLRPFVREFLKEASNMFEMYIYTMGDKAYAIEIAKLLDPSN 259

Query: 195 KYFNSRIITREDFKQKERKYLDLVLGQENSIVIVDDTESVWGGRVENLITVGSYDFFKDK 254
            YF  ++I+  D  ++ +K LD++LG  +  VI+DDTE VW    ENLI +  Y FF   
Sbjct: 260 IYFPLKVISNSDCTKRHQKGLDVILGAASVAVILDDTEFVWKKHKENLILMERYHFFASS 319

Query: 255 KKN---DCKSYSEQMSDESESDGALANILRALKAVHALYFDNP--GNHAAGRDVRSCLAK 309
            +      +S SE M DE ESDGALA +L  LK +HA++FD     +  + RDVR  +  
Sbjct: 320 CREFGFAVRSLSELMQDERESDGALATVLDVLKRIHAIFFDMAVETDDLSSRDVRQVIKA 379

Query: 310 IRSRILMGCTILFG----DDDFEELPLTWSRAEEMGAICTLVTDASVTHVVSSNTQSETF 365
           +R  IL GC I+F     ++   +  + W  AE +GA+C+   D+SVTHVV+ +  +E  
Sbjct: 380 VRKEILQGCKIVFSRVFPNNTRPQKQMVWKMAEYLGAVCSTDVDSSVTHVVTVDLGTEKA 439

Query: 366 EWA 368
            W 
Sbjct: 440 RWG 442

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	369
TAIR|locus:4010714056	440	CPL4 "C-terminal domain phosph	0.878	0.736	0.389	2e-56
TAIR|locus:4515103095	307	AT3G19595 [Arabidopsis thalian	0.704	0.846	0.373	9.9e-39
TAIR|locus:2012943	342	AT1G20320 [Arabidopsis thalian	0.691	0.745	0.373	1e-36
TAIR|locus:2045044	277	AT2G04930 [Arabidopsis thalian	0.718	0.956	0.352	1e-36
TAIR|locus:2090467	296	AT3G17550 [Arabidopsis thalian	0.726	0.905	0.347	1.5e-35
TAIR|locus:2162565	306	AT5G54210 [Arabidopsis thalian	0.672	0.810	0.337	1.8e-32
TAIR|locus:2051164	1241	CPL3 "C-terminal domain phosph	0.574	0.170	0.370	3.3e-28
TAIR|locus:2154458	302	AT5G23470 [Arabidopsis thalian	0.707	0.864	0.329	2.5e-26
TAIR|locus:2056256	302	AT2G02290 [Arabidopsis thalian	0.701	0.857	0.309	4e-26
TAIR|locus:2194656	221	AT1G43600 [Arabidopsis thalian	0.547	0.914	0.351	4.6e-25

TAIR|locus:4010714056 CPL4 "C-terminal domain phosphatase-like 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
 Identities = 132/339 (38%), Positives = 193/339 (56%)

Query:    38 CPHATILNGMCVVCDKLMDDSYGLCFDYIEKGLRYSIDEISRLKKRNTKNLLRMRKXXXX 97
             C H      MC VC + ++++ G+ F YI K +R + DEISRL+  +++ L R RK    
Sbjct:    68 CEHPGSFGNMCFVCGQKLEET-GVSFRYIHKEMRLNEDEISRLRDSDSRFLQRQRKLYLV 126

Query:    98 XXXXXXXXXSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRP 157
                      + ++  L  +E+YL+    +  +  +  +S G  LF ++     ++ KLRP
Sbjct:   127 LDLDHTLLNTTILRDLKPEEEYLKSHTHSLQDGCN--VS-GGSLFLLEFMQ--MMTKLRP 181

Query:   158 FVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKYLDL 217
             FV SFL+EAS +F + + T+G+R YA +  KLLDP  +YF  R+I+R+D   +  K LD+
Sbjct:   182 FVHSFLKEASEMFVMYIYTMGDRNYARQMAKLLDPKGEYFGDRVISRDDGTVRHEKSLDV 241

Query:   218 VLGQENSIVIVDDTESVWGGRVENLITVGSYXXXXXX---XXNDCKSYSEQMSDESESDG 274
             VLGQE++++I+DDTE+ W    +NLI +  Y           +  KS SE  SDESE DG
Sbjct:   242 VLGQESAVLILDDTENAWPKHKDNLIVIERYHFFSSSCRQFDHRYKSLSELKSDESEPDG 301

Query:   275 ALANILRALKAVHALYFDNPGNHAAGRDVRSCLAKIRSRILMGCTILFG-----DDDFEE 329
             ALA +L+ LK  HAL+F+N     + RDVR  L ++R  IL GC I+F          E+
Sbjct:   302 ALATVLKVLKQAHALFFENVDEGISNRDVRLMLKQVRKEILKGCKIVFSRVFPTKAKPED 361

Query:   330 LPLTWSRAEEMGAICTLVTDASVTHVVSSNTQSETFEWA 368
              PL W  AEE+GA C    DASVTHVV+ +  +E   WA
Sbjct:   362 HPL-WKMAEELGATCATEVDASVTHVVAMDVGTEKARWA 399

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0008022 "protein C-terminus binding" evidence=IPI

GO:0009651 "response to salt stress" evidence=IEP

TAIR|locus:4515103095 AT3G19595 [Arabidopsis thaliana (taxid:3702)]

 Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
 Identities = 103/276 (37%), Positives = 149/276 (53%)

Query:    38 CPHATILNGMCVVCDKLMDDSYGLCFDYIEKGLRYSIDEISRLKKRNTK-NLLRMRKXXX 96
             C H  I +G+C+ C   +  S G  FDYI  GL+ S + ++  K   TK + L  +K   
Sbjct:    35 CGHWYICHGICIGCKSTVKKSQGRAFDYIFDGLQLSHEAVALTKCFTTKLSCLNEKKLHL 94

Query:    97 XXXXXXXXXXSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIK-IGDNV-LLVK 154
                       + ++  L+  EKYL + A +A        +R +DL+KIK +GD +  L K
Sbjct:    95 VLDLDHTLLHTVMVPSLSQAEKYLIEEAGSA--------TR-DDLWKIKAVGDPMEFLTK 145

Query:   155 LRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKY 214
             LRPF+R FL+EA+  F + V T G+R YA + ++L+DP   YF  R+IT+ +      K 
Sbjct:   146 LRPFLRDFLKEANEFFTMYVYTKGSRVYAKQVLELIDPKKLYFGDRVITKTE--SPHMKT 203

Query:   215 LDLVLGQENSIVIVDDTESVWGGRVENLITVGSYXXXXXXXXNDCKSYSEQMSDESESDG 274
             LD VL +E  +VIVDDT +VW     NL+ +  Y         D   YSE+ +DESES+G
Sbjct:   204 LDFVLAEERGVVIVDDTRNVWPDHKSNLVDISKYSYFRLKG-QDSMPYSEEKTDESESEG 262

Query:   275 ALANILRALKAVHALYFDNPGNHAAGRDVRSCLAKI 310
              LAN+L+ LK VH  +F         +DVRS L +I
Sbjct:   263 GLANVLKLLKEVHQRFF-RVEEELESKDVRSLLQEI 297

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

TAIR|locus:2012943 AT1G20320 [Arabidopsis thaliana (taxid:3702)]

 Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
 Identities = 102/273 (37%), Positives = 141/273 (51%)

Query:    37 ICPHATILNGMCVVCDKLMDDSYGLCFDYIEKGLRYSIDEISRLKKRNTK-NLLRMRKXX 95
             IC H  +  G+C  C   +D  YG  FDY+  GL+ S   ++  K   T+   L  RK  
Sbjct:    19 ICGHFFVRYGICCNCRSTVDRDYGRAFDYLVHGLQLSHKAVAVTKSLTTQLACLNERKLH 78

Query:    96 XXXXXXXXXXXSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKL 155
                        S +I +L+  EKYL       GE  SD   R  DL+ +   D  +L+KL
Sbjct:    79 LVLDLDHTLLHSIMISRLSEGEKYL------LGE--SD--FR-EDLWTL---DREMLIKL 124

Query:   156 RPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKYL 215
             RPFV  FL+EA+ +F + V T+GNR+YA   +K +DP   YF  R+ITR++      K L
Sbjct:   125 RPFVHEFLKEANEIFSMYVYTMGNRDYAQAVLKWIDPKKVYFGDRVITRDE--SGFSKTL 182

Query:   216 DLVLGQENSIVIVDDTESVWGGRVENLITVGSYXXXXXXXXN-DCKSYSEQMSDESESDG 274
             DLVL  E  +VIVDDT  VW     NL+ +  Y        + + KSY+E+  DES + G
Sbjct:   183 DLVLADECGVVIVDDTRHVWPDHERNLLQITKYSYFRDYSHDKESKSYAEEKRDESRNQG 242

Query:   275 ALANILRALKAVHALYFDNPGNHAAGRDVRSCL 307
             +LAN+L+ LK VH  +F         +DVR  L
Sbjct:   243 SLANVLKVLKDVHQEFFRGGIEELDSKDVRLLL 275

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

TAIR|locus:2045044 AT2G04930 [Arabidopsis thaliana (taxid:3702)]

 Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
 Identities = 99/281 (35%), Positives = 150/281 (53%)

Query:    31 VSEEHTICPHATILNGMCVVCDKLMDDSYGLCFDYIEKGLRYSIDEISRLKKRNTKN-LL 89
             V+   + C H  +  G+C+ C   +  S    FDYI KGL+ S + ++  K   TK+  L
Sbjct:     3 VTTSSSCCGHWYVFQGICIGCKSKVHKSQFRKFDYIFKGLQLSNEAVALTKSLTTKHSCL 62

Query:    90 RMRKXXXXXXXXXXXXXSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIK-IGD 148
               +K             S+L+  L+  E+YL + A++         +R  DL+K + IG 
Sbjct:    63 NEKKLHLVLDLDHTLLHSKLVSNLSQAERYLIQEASSR--------TR-EDLWKFRPIGH 113

Query:   149 NV-LLVKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDF 207
              +  L+KLRPFVR FL+EA+ +F + V T+G+R YA   ++++DP   YF +R+IT+++ 
Sbjct:   114 PIDRLIKLRPFVRDFLKEANEMFTMFVYTMGSRIYAKAILEMIDPKKLYFGNRVITKDE- 172

Query:   208 KQKERKYLDLVLGQENSIVIVDDTESVWGGRVENLITVGSYXXXXXXXXNDCKSYSEQMS 267
                  K L+LVL +E  +VIVDDT  +W     NLI +  Y         D  SYSE+ +
Sbjct:   173 -SPRMKTLNLVLAEERGVVIVDDTRDIWPHHKNNLIQIRKYKYFRRSGL-DSNSYSEKKT 230

Query:   268 DESESDGALANILRALKAVHALYFDNPGNHAA-GRDVRSCL 307
             DE E+DG LAN+L+ L+ VH  +F           DVRS L
Sbjct:   231 DEGENDGGLANVLKLLREVHRRFFIVEVEEVLESMDVRSLL 271

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

TAIR|locus:2090467 AT3G17550 [Arabidopsis thaliana (taxid:3702)]

 Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
 Identities = 100/288 (34%), Positives = 146/288 (50%)

Query:    31 VSEEHTICPHATILNGMCVVCDKLMDDSYGLCFDYIEKGLRYSIDEISRLKKRNTKNL-- 88
             +S   + C H  +  G+C+ C   ++  +G  FDY+ +GL+ S  E +   KR T     
Sbjct:    22 LSSSRSSCGHWYVRYGVCIACKSTVNKRHGRAFDYLVQGLQLS-HEAAAFTKRFTTQFYC 80

Query:    89 LRMRKXXXXXXXXXXXXXSRLIGKLTSDEKYL-EKAAAAAGEFSSDKISRGNDLFKIKIG 147
             L  +K             S  +  L+  EK L E+A +   E          DL+K+   
Sbjct:    81 LNEKKLNLVLDLDHTLLHSIRVSLLSETEKCLIEEACSTTRE----------DLWKL--- 127

Query:   148 DNVLLVKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDF 207
             D+  L KLRPFV  FL+EA+ LF + V T+G R YA   +KL+DP   YF  R+ITR++ 
Sbjct:   128 DSDYLTKLRPFVHEFLKEANELFTMYVYTMGTRVYAESLLKLIDPKRIYFGDRVITRDES 187

Query:   208 KQKERKYLDLVLGQENSIVIVDDTESVWGGRVENLITVGSYXXXXXXXXNDCKSYSEQMS 267
                  K LDLVL +E  +VIVDDT  VW     NL+ +  Y         +  SY+E+  
Sbjct:   188 PYV--KTLDLVLAEERGVVIVDDTSDVWTHHKSNLVEINEYHFFRVNGPEESNSYTEEKR 245

Query:   268 DESESDGALANILRALKAVHALYFDNPGNHAAGRDVRSCLAKIRSRIL 315
             DES+++G LAN+L+ LK VH  +F         +DVR  L +I  ++L
Sbjct:   246 DESKNNGGLANVLKLLKEVHYGFF-RVKEELESQDVRFLLQEIDFKLL 292

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

TAIR|locus:2162565 AT5G54210 [Arabidopsis thaliana (taxid:3702)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 89/264 (33%), Positives = 135/264 (51%)

Query:    32 SEEHTICPHATILNGMCVVCDKLMDDSYGLCFDYIEKGLRYSIDEISRLKKRNTK-NLLR 90
             S   T C H  +  G+C  C   ++   G  FDY+  GL+ S   ++  K+  T+     
Sbjct:    26 SSSSTNCDHFFVRYGICCNCRSNVERHRGRSFDYLVDGLQLSDIAVTVTKRVTTQITCFN 85

Query:    91 MRKXXXXXXXXXXXXXSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNV 150
              +K             + +I  LT +E YL +      E S + + R N  +  +     
Sbjct:    86 DKKLHLVLDLDHTLLHTVMISNLTKEETYLIEE-----EDSREDLRRLNGGYSSEF---- 136

Query:   151 LLVKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK 210
              L+KLRPFV  FL+EA+++F + V T+G+R+YA   + L+DP+  YF  R+ITR +    
Sbjct:   137 -LIKLRPFVHEFLKEANKMFSMYVYTMGDRDYAMNVLNLIDPEKVYFGDRVITRNE--SP 193

Query:   211 ERKYLDLVLGQENSIVIVDDTESVWGGRVENLITVGSYXXXXXXXXNDCK---SYSEQMS 267
               K LDLVL  E  +VIVDDT  VW     NL+ +  Y        +D K   SY+E+  
Sbjct:   194 YIKTLDLVLADECGVVIVDDTPHVWPDHKRNLLEITKYNYFSDKTRHDVKYTKSYAEEKR 253

Query:   268 DESESDGALANILRALKAVHALYF 291
             DES +DG+LAN+L+ +K V+  +F
Sbjct:   254 DESRNDGSLANVLKVIKQVYEGFF 277

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

TAIR|locus:2051164 CPL3 "C-terminal domain phosphatase-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 316 (116.3 bits), Expect = 3.3e-28, Sum P(2) = 3.3e-28
 Identities = 86/232 (37%), Positives = 122/232 (52%)

Query:   154 KLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITRED----FKQ 209
             KLRP + +FLE+AS+L+E+ + T+GN+ YAT   KLLDP    FN R+I++ D       
Sbjct:   981 KLRPGIWNFLEKASKLYELHLYTMGNKLYATEMAKLLDPKGVLFNGRVISKGDDGDPLDG 1040

Query:   210 KER--KYLDL--VLGQENSIVIVDDTESVWGGRVENLITVGSYXXXXXXXXNDC---KSY 262
              ER  K  DL  V+G E+S+VI+DD+  VW     NLI V  Y               S 
Sbjct:  1041 DERVPKSKDLEGVMGMESSVVIIDDSVRVWPQHKMNLIAVERYLYFPCSRRQFGLLGPSL 1100

Query:   263 SEQMSDESESDGALANILRALKAVHALYFDNPGNHAAGRDVRSCLAKIRSRILMGCTILF 322
              E   DE   +G LA+ L  ++ +H  +F +        DVR+ LA  + +IL GC I+F
Sbjct:  1101 LELDRDEVPEEGTLASSLAVIEKIHQNFFSHTSLDEV--DVRNILASEQRKILAGCRIVF 1158

Query:   323 ------GDDDFEELPLTWSRAEEMGAICTLVTDASVTHVVSSNTQSETFEWA 368
                   G+      PL W  AE+ GA+CT   D  VTHVV+++  ++   WA
Sbjct:  1159 SRIIPVGEAKPHLHPL-WQTAEQFGAVCTTQVDEHVTHVVTNSLGTDKVNWA 1209

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0008420 "CTD phosphatase activity" evidence=ISS

GO:0008022 "protein C-terminus binding" evidence=IPI

GO:0009651 "response to salt stress" evidence=IEP

GO:0009788 "negative regulation of abscisic acid mediated signaling pathway" evidence=IMP

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=RCA

TAIR|locus:2154458 AT5G23470 [Arabidopsis thaliana (taxid:3702)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 92/279 (32%), Positives = 131/279 (46%)

Query:    38 CPHATILNGMCVVCDKLMDDSYGLCFDYIEKGLRYSIDEISRLKKRNTK-NLLRMRKXXX 96
             C H  + N +C+ C   +D+  G  FDY+ KG++ S + +   K   ++ + L  +K   
Sbjct:    30 CNHWFVRNKICISCYTTVDNFEGRSFDYLYKGMQMSNEALGFTKGLISQTSWLEDKKLHL 89

Query:    97 XXXXXXXXXXSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLR 156
                       +     L   EKY+ +      E   D I R N  F  +      L+KLR
Sbjct:    90 VLDLDQTLIHTIKTSLLYESEKYIIEEV----ESRKD-IKRFNTGFPEES-----LIKLR 139

Query:   157 PFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKYLD 216
             PFV  FL+E + +F + V T G  +YA   ++++DPD  YF +R+ITR +      K LD
Sbjct:   140 PFVHQFLKECNEMFSMYVYTKGGYDYARLVLEMIDPDKFYFGNRVITRRE--SPGFKTLD 197

Query:   217 LVLGQENSIVIVDDTESVWGGRVENLITVGSYXXXXXXXXNDCK-SYSEQMSDESESDGA 275
             LVL  E  IVIVDDT SVW    +NL+ +  Y          C  S  ++  DES+  G 
Sbjct:   198 LVLADERGIVIVDDTSSVWPHDKKNLLQIARYKYFGD---KSCLFSEDKKKIDESDEKGP 254

Query:   276 LANILRALKAVHALYF-DNPGNHAAGRDVRSCLAKIRSR 313
             L   LR LK VH  +F D         DVR  L +I  R
Sbjct:   255 LNTALRFLKDVHEEFFYDWSKKDLDSVDVRPLLKEISLR 293

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

TAIR|locus:2056256 AT2G02290 [Arabidopsis thaliana (taxid:3702)]

 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 87/281 (30%), Positives = 133/281 (47%)

Query:    38 CPHATILNGMCVVCDKLMDDSYGLCFDYIEKGLRYSIDEISRLKKRNTK-NLLRMRKXXX 96
             C H  + N +C  C+ ++D+  G  FDY+  G++ S + +   K+  ++ + L  +K   
Sbjct:    30 CSHWFVRNKVCASCNTIVDNYQGRSFDYLYTGIQMSNEALGFTKRLISQTSWLEDKKLHL 89

Query:    97 XXXXXXXXXXSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIG-DNVLLVKL 155
                       +  + +L+  EKY+ +      E  S K     DL +   G     L+KL
Sbjct:    90 VLDLDHTLVHTIKVSQLSESEKYITE------EVESRK-----DLRRFNTGFPEESLIKL 138

Query:   156 RPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKYL 215
             R FV  FL+E + +F + V T G  +YA   ++++DPD  YF +R+ITR +      K L
Sbjct:   139 RSFVHQFLKECNEMFSLYVYTKGGYDYAQLVLEMIDPDKIYFGNRVITRRE--SPGFKTL 196

Query:   216 DLVLGQENSIVIVDDTESVWGGRVENLITVGSYXXXXXXX--XNDCKSYSEQMSDESESD 273
             DLVL  E  IV+VDD  SVW    +NL+ +  Y          ++CK    +  DES+  
Sbjct:   197 DLVLADERGIVVVDDKSSVWPHDKKNLLQIARYKYFGDQSCLLSECK----KKIDESDEK 252

Query:   274 GALANILRALKAVHALYF-DNPGNHAAGRDVRSCLAKIRSR 313
             G L   LR L  VH  +F D         DVR  L +I  R
Sbjct:   253 GPLNTALRFLMDVHEEFFCDWSRKDLDSVDVRPLLKEISLR 293

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

TAIR|locus:2194656 AT1G43600 [Arabidopsis thaliana (taxid:3702)]

 Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
 Identities = 77/219 (35%), Positives = 113/219 (51%)

Query:    80 LKKRNTKNLL---RMRKXXXXXXXXXXXXXSRLIGKLTSDEKYLEKAAAAAGEFSSDKIS 136
             LKK  T  L    + +K             S L+  L+  EKYL +         +D  S
Sbjct:     2 LKKHLTTQLFQKKKKKKLHLVLDLDHTLLHSVLVSDLSKREKYLLE--------ETD--S 51

Query:   137 RGNDLFKIKIGDNVLLVKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKY 196
             R  DL++  +     ++KLRPF+  FL EA++LF + V T+G+  YA + +KL+DPD  Y
Sbjct:    52 R-QDLWRRNVDGYEFIIKLRPFLHEFLLEANKLFTMHVYTMGSSSYAKQVLKLIDPDKVY 110

Query:   197 FNSRIITREDFKQKERKYLDLVLGQENSIVIVDDTESVWGGRVENLITVGSYXXXXXXXX 256
             F  R+ITRE       K LDL+   +  +VIVDDT  VW     NL+ +  Y        
Sbjct:   111 FGKRVITRE--ASPFNKSLDLLAADKRRVVIVDDTVHVWPFHKRNLLQITKYVYFKVDGT 168

Query:   257 NDCKSYSEQMSDESESDGALANILRALKAVHALYFDNPG 295
                 SY+E   DES+S+G+LAN+L+ L+ VH  + ++ G
Sbjct:   169 K-WDSYAEAKKDESQSNGSLANVLKFLEDVHKRFEEDLG 206

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.3	0.766
3rd Layer	3.1.3.16	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	CPL4	CPL4 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 4); phosphoprotein phosphatase; Encodes a polypeptide that contains FCPH and BRCT domains. RNAi suppression mutant lines were generated, which displayed a range of phenotypic abnormalities, including- incomplete to no cotyledon expansion, slow growth, epinastic leaves or small inflorescences. ; Processively dephosphorylates 'Ser-2' and/or 'Ser-5' of the heptad repeats YSPTSPS in the C-terminal domain of the largest RNA polymerase II subunit (RPB1). This promotes the activity of RNA polymerase II (By similarity). Required for normal plant growth (440 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	RAP74	transcription initiation factor IIF alpha subunit (TFIIF-alpha) family protein; RAP74; FUNCTION [...] (649 aa)					•	•	•		0.999
	AT5G58000	unknown protein; LOCATED IN- endoplasmic reticulum, chloroplast; CONTAINS InterPro DOMAIN/s- Re [...] (487 aa)							•		0.919
	AT2G33540.1-P	CPL3 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 3); CTD phosphatase/ phosphoprotein phosphatase; C-TER [...] (1241 aa)						•	•	•	0.911
	AT2G02290	NLI interacting factor (NIF) family protein; NLI interacting factor (NIF) family protein; FUNCT [...] (302 aa)						•	•	•	0.907
	AT5G23470	NLI interacting factor (NIF) family protein; NLI interacting factor (NIF) family protein; FUNCT [...] (302 aa)						•	•	•	0.907
	SPT42	SPT42 (SPT4 HOMOLOG 2); positive transcription elongation factor/ zinc ion binding; SPT4 HOMOLO [...] (116 aa)						•			0.899
	NRPB7	NRPB7; DNA-directed RNA polymerase/ RNA binding; Non-catalytic subunit specific to DNA-directed [...] (176 aa)						•			0.899
	RPB5C	RPB5C (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, C); DNA binding / DNA-directed RNA polymerase; [...] (210 aa)						•			0.899
	AT5G54210	NLI interacting factor (NIF) family protein; NLI interacting factor (NIF) family protein; FUNCT [...] (306 aa)						•		•	0.899
	CBP20	CBP20 (CAP-BINDING PROTEIN 20); RNA binding / RNA cap binding; Encodes a nuclear cap-binding pr [...] (257 aa)						•			0.899

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	369
TIGR02250	156	TIGR02250, FCP1_euk, FCP1-like phosphatase, phosph	4e-53
smart00577	148	smart00577, CPDc, catalytic domain of ctd-like pho	2e-36
pfam03031	153	pfam03031, NIF, NLI interacting factor-like phosph	5e-24
TIGR02251	162	TIGR02251, HIF-SF_euk, Dullard-like phosphatase do	5e-12
COG5190	390	COG5190, FCP1, TFIIF-interacting CTD phosphatases,	1e-09

>gnl|CDD|131304 TIGR02250, FCP1_euk, FCP1-like phosphatase, phosphatase domain

 Score =  172 bits (439), Expect = 4e-53
 Identities = 72/165 (43%), Positives = 96/165 (58%), Gaps = 10/165 (6%)

Query: 88  LLRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIG 147
           LLR +KLHLVLDLD TL+H+     L+  EKY  +      E +S+      DL K  +G
Sbjct: 1   LLREKKLHLVLDLDQTLIHTTKDPTLSEWEKYDIE------EPNSETRR---DLRKFNLG 51

Query: 148 DNVLLVKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDF 207
               L KLRPF+  FL+EAS+L+E+ V T+G R YA    KL+DPD KYF  RII+R++ 
Sbjct: 52  TMWYLTKLRPFLHEFLKEASKLYEMHVYTMGTRAYAQAIAKLIDPDGKYFGDRIISRDES 111

Query: 208 KQKERKYL-DLVLGQENSIVIVDDTESVWGGRVENLITVGSYDFF 251
                K L  L    E+ +VI+DD E VW     NLI +  Y++F
Sbjct: 112 GSPHTKSLLRLFPADESMVVIIDDREDVWPWHKRNLIQIEPYNYF 156

This model represents the phosphatase domain of the humanRNA polymerase II subunit A C-terminal domain phosphatase (FCP1, ) and closely related phosphatases from eukaryotes including plants, fungi and slime mold. This domain is a member of the haloacid dehalogenase (HAD) superfamily by virtue of a conserved set of three catalytic motifs and a conserved fold as predicted by PSIPRED. The third motif in this family is distinctive (hhhhDDppphW). This domain is classified as a "Class III" HAD, since there is no large "cap" domain found between motifs 1 and 2 or motifs 2 and 3.This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the pfam03031. Length = 156

>gnl|CDD|214729 smart00577, CPDc, catalytic domain of ctd-like phosphatases

 Score =  128 bits (325), Expect = 2e-36
 Identities = 54/169 (31%), Positives = 75/169 (44%), Gaps = 26/169 (15%)

Query: 92  RKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVL 151
           +K  LVLDLD TL+HS                         +  +R   +  + I  +  
Sbjct: 1   KKKTLVLDLDETLVHSTHRSF-------------------KEWTNRD-FIVPVLIDGHPH 40

Query: 152 --LVKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITRED--- 206
              VK RP V  FL+ AS LFE+ V T G R YA   + LLDP  KYF  R + R++   
Sbjct: 41  GVYVKKRPGVDEFLKRASELFELVVFTAGLRMYADPVLDLLDPK-KYFGYRRLFRDECVF 99

Query: 207 FKQKERKYLDLVLGQENSIVIVDDTESVWGGRVENLITVGSYDFFKDKK 255
            K K  K L L+    + ++I+DD+   W    ENLI +  +    D  
Sbjct: 100 VKGKYVKDLSLLNRDLSKVIIIDDSPDSWPFHPENLIPIKPWFGDPDDT 148

Length = 148

>gnl|CDD|217328 pfam03031, NIF, NLI interacting factor-like phosphatase

 Score = 96.1 bits (240), Expect = 5e-24
 Identities = 43/171 (25%), Positives = 68/171 (39%), Gaps = 30/171 (17%)

Query: 94  LHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLV 153
             LVLDLD TL+HS                                    +   ++ + V
Sbjct: 1   KTLVLDLDETLVHSSF--------------------------EPDLPFDFVLNFNHGVYV 34

Query: 154 KLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERK 213
           K RP +  FL+E S+ +EI + T  ++EYA   +  LDP  KYF    + RE       K
Sbjct: 35  KKRPGLDEFLQELSKYYEIVIFTASSKEYADPVLDKLDPKKKYF-KHRLYRESCTFYV-K 92

Query: 214 YLDLVLGQENSIVIVDDTESVWGGRVENLITVGSYDFFKDKKKNDCKSYSE 264
            L L+    + +VIVD++   +  + +N I +    F+ D    +      
Sbjct: 93  DLSLLGRDLSRVVIVDNSPRSFLLQPDNGIPIPP--FYGDPDDTELLKLLP 141

This family contains a number of NLI interacting factor isoforms and also an N-terminal regions of RNA polymerase II CTC phosphatase and FCP1 serine phosphatase. This region has been identified as the minimal phosphatase domain. Length = 153

>gnl|CDD|233801 TIGR02251, HIF-SF_euk, Dullard-like phosphatase domain

 Score = 63.1 bits (154), Expect = 5e-12
 Identities = 48/202 (23%), Positives = 80/202 (39%), Gaps = 47/202 (23%)

Query: 93  KLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGD--NV 150
           K  LVLDLD TL+HS              K      +F             + I      
Sbjct: 1   KKTLVLDLDETLVHSTF------------KMPKVDADF----------KVPVLIDGKIIP 38

Query: 151 LLVKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK 210
           + V  RP V  FLE  S+ +E+ + T    EYA   + +LD   K  + R+  RE     
Sbjct: 39  VYVFKRPHVDEFLERVSKWYELVIFTASLEEYADPVLDILDRGGKVISRRLY-RESCVFT 97

Query: 211 ERKYL-DL-VLGQE-NSIVIVDDTESVWGGRVENLITVGSYDFFKDKKKNDCKSYSEQMS 267
             KY+ DL ++G++ + ++I+D++   +  + +N I                KS+    +
Sbjct: 98  NGKYVKDLSLVGKDLSKVIIIDNSPYSYSLQPDNAIP--------------IKSWFGDPN 143

Query: 268 DESESDGALANILRALKAVHAL 289
           D       L N++  L+ +   
Sbjct: 144 DT-----ELLNLIPFLEGLRFE 160

This model represents the putative phosphatase domain of a family of eukaryotic proteins including "Dullard" , and the NLI interacting factor (NIF)-like phosphatases. This domain is a member of the haloacid dehalogenase (HAD) superfamily by virtue of a conserved set of three catalytic motifs and a conserved fold as predicted by PSIPRED. The third motif in this family is distinctive (hhhhDNxPxxa) and aparrently lacking the last aspartate. This domain is classified as a "Class III" HAD, since there is no large "cap" domain found between motifs 1 and 2 or motifs 2 and 3. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the pfam03031. Length = 162

>gnl|CDD|227517 COG5190, FCP1, TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]

 Score = 59.0 bits (143), Expect = 1e-09
 Identities = 58/203 (28%), Positives = 88/203 (43%), Gaps = 36/203 (17%)

Query: 69  GLRYSIDEISRLKKRNTKNLLRMRKLHLVLDLDHTLLHSR------------LIGKLTSD 116
            +  S +E SR KK + + L + +KL LV+DLD T++H+             L   L S 
Sbjct: 2   NVNISHEEASRTKKESMEALRQDKKLILVVDLDQTIIHTTVDPNDPNNVNQSLERTLKS- 60

Query: 117 EKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEASRLFEISVCT 176
                         +     +    + +K        KL PF+       S L+E+ + T
Sbjct: 61  -------------VNDRDPVQEKCAYYVKA-----RPKLFPFLTKI----SPLYELHIYT 98

Query: 177 LGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKYLD-LVLGQENSIVIVDDTESVW 235
           +G R YA R  K++DP  K FN RI++R++     +K L  L    +N +VI+DD   VW
Sbjct: 99  MGTRAYAERIAKIIDPTGKLFNDRILSRDESGSLSQKSLSRLFPKDQNMVVIIDDRGDVW 158

Query: 236 GGRVENLITVGSYDFFKDKKKND 258
           G    N   V    F K +   D
Sbjct: 159 GVGDMNSNFVAKSPFSKYESDKD 181

Length = 390

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	369
KOG0323	635	consensus TFIIF-interacting CTD phosphatases, incl	100.0
TIGR02250	156	FCP1_euk FCP1-like phosphatase, phosphatase domain	100.0
KOG1605	262	consensus TFIIF-interacting CTD phosphatase, inclu	100.0
TIGR02251	162	HIF-SF_euk Dullard-like phosphatase domain. This d	100.0
PF03031	159	NIF: NLI interacting factor-like phosphatase; Inte	100.0
TIGR02245	195	HAD_IIID1 HAD-superfamily subfamily IIID hydrolase	99.97
KOG2832	393	consensus TFIIF-interacting CTD phosphatase, inclu	99.92
smart00577	148	CPDc catalytic domain of ctd-like phosphatases.	99.91
COG5190	390	FCP1 TFIIF-interacting CTD phosphatases, including	99.81
COG5190	390	FCP1 TFIIF-interacting CTD phosphatases, including	99.79
PF12738	63	PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2W	98.76
PF00533	78	BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IP	98.24
TIGR01681	128	HAD-SF-IIIC HAD-superfamily phosphatase, subfamily	98.1
PLN03243	260	haloacid dehalogenase-like hydrolase; Provisional	98.0
TIGR01684	301	viral_ppase viral phosphatase. These proteins also	97.95
TIGR01685	174	MDP-1 magnesium-dependent phosphatase-1. This mode	97.95
cd01427	139	HAD_like Haloacid dehalogenase-like hydrolases. Th	97.94
PHA03398	303	viral phosphatase superfamily protein; Provisional	97.9
PRK13288	214	pyrophosphatase PpaX; Provisional	97.9
PLN02575	381	haloacid dehalogenase-like hydrolase	97.87
smart00292	80	BRCT breast cancer carboxy-terminal domain.	97.84
PRK10563	221	6-phosphogluconate phosphatase; Provisional	97.82
PRK13225	273	phosphoglycolate phosphatase; Provisional	97.81
PRK10725	188	fructose-1-P/6-phosphogluconate phosphatase; Provi	97.81
PRK13226	229	phosphoglycolate phosphatase; Provisional	97.79
cd00027	72	BRCT Breast Cancer Suppressor Protein (BRCA1), car	97.78
TIGR01662	132	HAD-SF-IIIA HAD-superfamily hydrolase, subfamily I	97.74
TIGR01656	147	Histidinol-ppas histidinol-phosphate phosphatase f	97.72
TIGR01686	320	FkbH FkbH-like domain. The C-terminal portion of t	97.71
TIGR01261	161	hisB_Nterm histidinol-phosphatase. This model desc	97.66
PRK13223	272	phosphoglycolate phosphatase; Provisional	97.66
TIGR01672	237	AphA HAD superfamily (subfamily IIIB) phosphatase,	97.59
PHA02530	300	pseT polynucleotide kinase; Provisional	97.58
TIGR00338	219	serB phosphoserine phosphatase SerB. Phosphoserine	97.49
COG4996	164	Predicted phosphatase [General function prediction	97.46
TIGR01664	166	DNA-3'-Pase DNA 3'-phosphatase. The central phosph	97.44
COG0637	221	Predicted phosphatase/phosphohexomutase [General f	97.43
TIGR00213	176	GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase	97.4
PRK08942	181	D,D-heptose 1,7-bisphosphate phosphatase; Validate	97.37
PRK09552	219	mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosp	97.36
PLN02940	382	riboflavin kinase	97.35
PF05152	297	DUF705: Protein of unknown function (DUF705); Inte	97.27
TIGR01489	188	DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopent	97.23
PF13419	176	HAD_2: Haloacid dehalogenase-like hydrolase; PDB:	97.17
TIGR01533	266	lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) famil	97.17
TIGR01668	170	YqeG_hyp_ppase HAD superfamily (subfamily IIIA) ph	97.12
PF12689	169	Acid_PPase: Acid Phosphatase; InterPro: IPR010036	97.11
PRK13582	205	thrH phosphoserine phosphatase; Provisional	97.09
PRK08238	479	hypothetical protein; Validated	97.08
KOG3226	508	consensus DNA repair protein [Replication, recombi	97.01
TIGR02253	221	CTE7 HAD superfamily (subfamily IA) hydrolase, TIG	96.9
COG2179	175	Predicted hydrolase of the HAD superfamily [Genera	96.89
PRK06769	173	hypothetical protein; Validated	96.68
PLN02770	248	haloacid dehalogenase-like hydrolase family protei	96.67
TIGR01449	213	PGP_bact 2-phosphoglycolate phosphatase, prokaryot	96.65
TIGR02254	224	YjjG/YfnB HAD superfamily (subfamily IA) hydrolase	96.64
COG0546	220	Gph Predicted phosphatases [General function predi	96.61
PRK05446	354	imidazole glycerol-phosphate dehydratase/histidino	96.58
TIGR01993	184	Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These	96.57
TIGR01428	198	HAD_type_II 2-haloalkanoic acid dehalogenase, type	96.57
TIGR01454	205	AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthes	96.55
PRK11009	237	aphA acid phosphatase/phosphotransferase; Provisio	96.55
PLN02954	224	phosphoserine phosphatase	96.53
TIGR01509	183	HAD-SF-IA-v3 haloacid dehalogenase superfamily, su	96.5
PRK06063	313	DNA polymerase III subunit epsilon; Provisional	96.48
PRK09449	224	dUMP phosphatase; Provisional	96.44
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	96.43
TIGR01422	253	phosphonatase phosphonoacetaldehyde hydrolase. Thi	96.36
PRK06195	309	DNA polymerase III subunit epsilon; Validated	96.34
KOG3109	244	consensus Haloacid dehalogenase-like hydrolase [Ge	96.26
PRK14350	669	ligA NAD-dependent DNA ligase LigA; Provisional	96.18
PRK14988	224	GMP/IMP nucleotidase; Provisional	96.13
PRK07956	665	ligA NAD-dependent DNA ligase LigA; Validated	96.13
PRK10826	222	2-deoxyglucose-6-phosphatase; Provisional	96.12
TIGR03351	220	PhnX-like phosphonatase-like hydrolase. This clade	95.89
PRK13222	226	phosphoglycolate phosphatase; Provisional	95.88
COG1011	229	Predicted hydrolase (HAD superfamily) [General fun	95.83
PRK11587	218	putative phosphatase; Provisional	95.83
TIGR01670	154	YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-pho	95.81
PRK09456	199	?-D-glucose-1-phosphatase; Provisional	95.78
COG5275	276	BRCT domain type II [General function prediction o	95.73
PRK14351	689	ligA NAD-dependent DNA ligase LigA; Provisional	95.72
COG0560	212	SerB Phosphoserine phosphatase [Amino acid transpo	95.58
TIGR01459	242	HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolas	95.56
PLN02779	286	haloacid dehalogenase-like hydrolase family protei	95.52
TIGR02009	185	PGMB-YQAB-SF beta-phosphoglucomutase family hydrol	95.52
PLN03122	815	Poly [ADP-ribose] polymerase; Provisional	95.43
PRK13478	267	phosphonoacetaldehyde hydrolase; Provisional	95.38
PF08645	159	PNK3P: Polynucleotide kinase 3 phosphatase; InterP	95.33
TIGR01549	154	HAD-SF-IA-v1 haloacid dehalogenase superfamily, su	95.32
TIGR02252	203	DREG-2 REG-2-like, HAD superfamily (subfamily IA)	95.15
TIGR01548	197	HAD-SF-IA-hyp1 haloacid dehalogenase superfamily,	95.11
TIGR01990	185	bPGM beta-phosphoglucomutase. The enzyme from L. l	95.08
TIGR00575	652	dnlj DNA ligase, NAD-dependent. The member of this	95.0
TIGR01491	201	HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPa	94.93
TIGR01689	126	EcbF-BcbF capsule biosynthesis phosphatase. Due to	94.77
COG0272	667	Lig NAD-dependent DNA ligase (contains BRCT domain	94.74
TIGR02247	211	HAD-1A3-hyp Epoxide hydrolase N-terminal domain-li	94.67
TIGR03333	214	salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl	94.61
TIGR01691	220	enolase-ppase 2,3-diketo-5-methylthio-1-phosphopen	94.57
PRK11133	322	serB phosphoserine phosphatase; Provisional	94.42
PF13344	101	Hydrolase_6: Haloacid dehalogenase-like hydrolase;	94.41
PTZ00445	219	p36-lilke protein; Provisional	94.36
PLN02811	220	hydrolase	94.15
TIGR01493	175	HAD-SF-IA-v2 Haloacid dehalogenase superfamily, su	94.12
TIGR01544	277	HAD-SF-IE haloacid dehalogenase superfamily, subfa	94.04
PHA02597	197	30.2 hypothetical protein; Provisional	93.99
PRK09484	183	3-deoxy-D-manno-octulosonate 8-phosphate phosphata	93.98
PF09419	168	PGP_phosphatase: Mitochondrial PGP phosphatase; In	93.75
PLN03123	981	poly [ADP-ribose] polymerase; Provisional	93.73
KOG2914	222	consensus Predicted haloacid-halidohydrolase and r	93.61
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	93.5
PRK06698	459	bifunctional 5'-methylthioadenosine/S-adenosylhomo	93.01
PF08282	254	Hydrolase_3: haloacid dehalogenase-like hydrolase;	92.7
PF06888	234	Put_Phosphatase: Putative Phosphatase; InterPro: I	92.64
PRK00192	273	mannosyl-3-phosphoglycerate phosphatase; Reviewed	92.52
TIGR02461	225	osmo_MPG_phos mannosyl-3-phosphoglycerate phosphat	92.47
TIGR01456	321	CECR5 HAD-superfamily class IIA hydrolase, TIGR014	91.99
TIGR02463	221	MPGP_rel mannosyl-3-phosphoglycerate phosphatase-r	91.85
PRK03669	271	mannosyl-3-phosphoglycerate phosphatase; Reviewed	91.77
COG0561	264	Cof Predicted hydrolases of the HAD superfamily [G	91.6
PLN02645	311	phosphoglycolate phosphatase	91.11
TIGR00099	256	Cof-subfamily Cof subfamily of IIB subfamily of ha	90.64
TIGR02137	203	HSK-PSP phosphoserine phosphatase/homoserine phosp	90.33
TIGR01675	229	plant-AP plant acid phosphatase. This model explic	90.12
TIGR01487	215	SPP-like sucrose-phosphate phosphatase-like hydrol	90.11
smart00775	157	LNS2 LNS2 domain. This domain is found in Saccharo	90.01
PRK10513	270	sugar phosphate phosphatase; Provisional	89.87
PRK10444	248	UMP phosphatase; Provisional	89.44
COG2503	274	Predicted secreted acid phosphatase [General funct	89.25
TIGR01488	177	HAD-SF-IB Haloacid Dehalogenase superfamily, subfa	89.06
TIGR01484	204	HAD-SF-IIB HAD-superfamily hydrolase, subfamily II	88.89
COG3882	574	FkbH Predicted enzyme involved in methoxymalonyl-A	88.86
PRK10530	272	pyridoxal phosphate (PLP) phosphatase; Provisional	88.53
TIGR01458	257	HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydr	88.48
TIGR01486	256	HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosph	88.08
PRK10748	238	flavin mononucleotide phosphatase; Provisional	87.79
PRK01158	230	phosphoglycolate phosphatase; Provisional	87.74
COG0241	181	HisB Histidinol phosphatase and related phosphatas	87.37
PLN02887	580	hydrolase family protein	87.23
PRK10187	266	trehalose-6-phosphate phosphatase; Provisional	87.12
PRK15126	272	thiamin pyrimidine pyrophosphate hydrolase; Provis	86.83
PRK10976	266	putative hydrolase; Provisional	86.4
PF11019	252	DUF2608: Protein of unknown function (DUF2608); In	86.39
KOG3524	850	consensus Predicted guanine nucleotide exchange fa	86.27
TIGR01680	275	Veg_Stor_Prot vegetative storage protein. The prot	86.06
TIGR01482	225	SPP-subfamily Sucrose-phosphate phosphatase subfam	85.92
COG0647	269	NagD Predicted sugar phosphatases of the HAD super	85.09
TIGR00685	244	T6PP trehalose-phosphatase. At least 18 distinct s	84.99
TIGR01452	279	PGP_euk phosphoglycolate/pyridoxal phosphate phosp	84.97
TIGR01457	249	HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydr	84.72
KOG3120	256	consensus Predicted haloacid dehalogenase-like hyd	84.1
COG4359	220	Uncharacterized conserved protein [Function unknow	83.46
PLN02151	354	trehalose-phosphatase	83.25
TIGR01460	236	HAD-SF-IIA Haloacid Dehalogenase Superfamily Class	82.43
TIGR01485	249	SPP_plant-cyano sucrose-6F-phosphate phosphohydrol	82.38
PLN02423	245	phosphomannomutase	82.08
TIGR01490	202	HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrol	81.99
PLN03017	366	trehalose-phosphatase	81.72
TIGR01548	197	HAD-SF-IA-hyp1 haloacid dehalogenase superfamily,	81.32
KOG1929	811	consensus Nucleotide excision repair factor NEF2,	81.16
PLN02580	384	trehalose-phosphatase	80.67

>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]

Probab=100.00  E-value=3.1e-62  Score=503.89  Aligned_cols=327  Identities=37%  Similarity=0.609  Sum_probs=290.4

Q ss_pred             CCCCCCceeeccccccccccccccCCccceeecCCcccCHHHHHHHhhhhhhh-hhcCCceEEEEeCCCceeeeccCCCC
Q 044162           35 HTICPHATILNGMCVVCDKLMDDSYGLCFDYIEKGLRYSIDEISRLKKRNTKN-LLRMRKLHLVLDLDHTLLHSRLIGKL  113 (369)
Q Consensus        35 ~~~C~H~~~~~~~C~~Cg~~~~~~~~~~~~~~~~~l~vs~~~a~~~~~~~~~~-ll~~~Kl~LVLDLD~TLIhs~~~~~~  113 (369)
                      .+.|.|+++++|||+.||++|+...+..+.|...+++++...+..++...... .+++++|.||+|||+||+|+...+.+
T Consensus        87 ~~~C~H~~v~~GlC~~Cg~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~lv~Dld~tllh~~~~~~l  166 (635)
T KOG0323|consen   87 TSCCEHFTVFGGLCASCGKDLESLQGRSFDYLVKGLQLSNEMVAFTKTLTTQFSSLNRKKLHLVLDLDHTLLHTILKSDL  166 (635)
T ss_pred             cCCccceeecccHHHHHHHHHHHhhccchhcccchhhhhhhhhhhhhHHHHHHHHHhhhcceeehhhhhHHHHhhccchh
Confidence            47899999999999999999999998889999999999999999998876654 46667789999999999999999999


Q ss_pred             CchHHHHHHHHhhccCCccccccCCCceeEEEEc--CceEEEEeCccHHHHHHHHhcCccEEEecCCcHHHHHHHHHHhC
Q 044162          114 TSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIG--DNVLLVKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLD  191 (369)
Q Consensus       114 ~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~--~~~~~vklRPgl~eFL~~ls~~yEi~I~T~g~~~YA~~i~~~lD  191 (369)
                      .++++|++++...+        +.+.++++++.+  ..+||||+|||+++||++++++|||||||||+|.||..|+++||
T Consensus       167 ~e~~~~l~~~~~~~--------~sn~dl~~~~~~~~~~~~~vKlRP~~~efL~~~sklfemhVyTmg~R~YA~~i~~liD  238 (635)
T KOG0323|consen  167 SETEKYLKEEAESV--------ESNKDLFRFNPLGHDTEYLVKLRPFVHEFLKEANKLFEMHVYTMGTRDYALEIAKLID  238 (635)
T ss_pred             hhhhhhcccccccc--------cccccceeecccCCCceEEEEeCccHHHHHHHHHhhceeEEEeccchHHHHHHHHHhC
Confidence            99998887654422        237788988864  45999999999999999999999999999999999999999999


Q ss_pred             CCCCcccceEEeeccccCccccccccc-CCCCCcEEEEeCCccccccCCCceEEeCcccccccccCCC------------
Q 044162          192 PDCKYFNSRIITREDFKQKERKYLDLV-LGQENSIVIVDDTESVWGGRVENLITVGSYDFFKDKKKND------------  258 (369)
Q Consensus       192 p~~~~f~~Ri~srd~~~~~~~KdL~~l-~~~~~~vvIvDD~~~~w~~~~~N~I~I~~y~fF~~~~~~~------------  258 (369)
                      |+|.||++||+||++......+||..+ +++.+|||||||+.+||..++.|+|+|.||.||.+.|+.+            
T Consensus       239 P~~~lF~dRIisrde~~~~kt~dL~~~~p~g~smvvIIDDr~dVW~~~~~nLI~i~~y~yF~~~gd~nap~~~~~~~~~~  318 (635)
T KOG0323|consen  239 PEGKYFGDRIISRDESPFFKTLDLVLLFPCGDSMVVIIDDRSDVWPDHKRNLIQIAPYPYFSGQGDINAPPPLHVLRNVA  318 (635)
T ss_pred             CCCccccceEEEecCCCcccccccccCCCCCCccEEEEeCccccccCCCcceEEeeeeecccCcccccCCcccccccchh
Confidence            999999999999999777666777654 5899999999999999999888999999999999999633            


Q ss_pred             ----------------------------------------------------------------CCcccccccCCcccch
Q 044162          259 ----------------------------------------------------------------CKSYSEQMSDESESDG  274 (369)
Q Consensus       259 ----------------------------------------------------------------~~s~~e~~~de~~~D~  274 (369)
                                                                                      ..|+.+...|+.+.|.
T Consensus       319 ~~~~~~~~k~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~s~~~~~~de~~~D~  398 (635)
T KOG0323|consen  319 CSVRGAFFKEFDPSLKSRISEVRYEDDDESNPTSYSVELSANPGPLKQDGMDEFVPEENAPEARSGSYREKKSDESDEDG  398 (635)
T ss_pred             cccccccccccCcccccccccccccccccccCcccccccccccCcccccccccccccccchhhcccccccccccccccch
Confidence                                                                            2345566678889999


Q ss_pred             HHHHHHHHHHHHHHHhcCCC---CCCCCCCcHHHHHHHHHHhhhcCceEEecccCCCCCh----hHHHHHHhcCCEEEec
Q 044162          275 ALANILRALKAVHALYFDNP---GNHAAGRDVRSCLAKIRSRILMGCTILFGDDDFEELP----LTWSRAEEMGAICTLV  347 (369)
Q Consensus       275 ~L~~l~~~L~~ih~~ff~~~---~~~~~~~DVr~il~~~r~~VL~g~~ivFSg~~p~~~p----~lw~la~~~GA~v~~~  347 (369)
                      +|.+++++|+.+|..||..+   +.....+|||.+|+++|+++++||.++|||++|.+.+    .+...+.+|||....+
T Consensus       399 ~L~~~~kvl~~vH~~ff~~~~~~~e~~~~~Dvr~~i~~~~~~v~~~~~~vfSg~~P~~~~~~~s~~~~~~~~~g~vs~~~  478 (635)
T KOG0323|consen  399 ELANLLKVLKPVHKGFFAKYDEVEETLESPDVRLLIPELRTKVLKGSQIVFSGLHPTGSTDESADILGVAQQLGAVSAPD  478 (635)
T ss_pred             hHHHHhhhhcccchhhhhccccccccccCCChhhhhhhhhhHHhhccceeecccccCcCCcchhhhhhhhhcccceeccc
Confidence            99999999999999999975   3456689999999999999999999999999999643    6666799999999999


Q ss_pred             cCCCceEEEecCCCcccccccC
Q 044162          348 TDASVTHVVSSNTQSETFEWAE  369 (369)
Q Consensus       348 i~~~vTHvVa~~~gT~K~~~a~  369 (369)
                      ++..|||+||++.||.|+.+|.
T Consensus       479 ~~~~~th~i~~~~gt~k~~~a~  500 (635)
T KOG0323|consen  479 VSDKTTHLIAANAGTKKVYKAV  500 (635)
T ss_pred             ccchhhhHHhhccCcceeeccc
Confidence            9999999999999999999884

>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain

Probab=100.00  E-value=5.5e-39  Score=283.76  Aligned_cols=155  Identities=45%  Similarity=0.691  Sum_probs=133.9

Q ss_pred             hhcCCceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHHHHHHHh
Q 044162           88 LLRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEAS  167 (369)
Q Consensus        88 ll~~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~eFL~~ls  167 (369)
                      |++++|++||||||||||||+..+..+..+.+..+.      .   .....++++++...+..+++++|||+.+||++++
T Consensus         1 ~~~~~kl~LVLDLDeTLihs~~~~~~~~~~~~~~~~------~---~~~~~~~~~~f~~~~~~~~v~~rPgv~efL~~l~   71 (156)
T TIGR02250         1 LLREKKLHLVLDLDQTLIHTTKDPTLSEWEKYDIEE------P---NSETRRDLRKFNLGTMWYLTKLRPFLHEFLKEAS   71 (156)
T ss_pred             CCcCCceEEEEeCCCCcccccccCccchhhhccccc------C---CccccccceEEEcCCeEEEEEECCCHHHHHHHHH
Confidence            578999999999999999999987665444331110      0   0011346778877667899999999999999999


Q ss_pred             cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCcccccccc-cCCCCCcEEEEeCCccccccCCCceEEeC
Q 044162          168 RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKYLDL-VLGQENSIVIVDDTESVWGGRVENLITVG  246 (369)
Q Consensus       168 ~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~~~KdL~~-l~~~~~~vvIvDD~~~~w~~~~~N~I~I~  246 (369)
                      +.|+++|||++++.||++|++.|||.+.+|++|+++|++|...+.|||+. +++++++||||||++++|..|++|+|+|+
T Consensus        72 ~~yel~I~T~~~~~yA~~vl~~ldp~~~~F~~ri~~rd~~~~~~~KdL~~i~~~d~~~vvivDd~~~~~~~~~~N~i~i~  151 (156)
T TIGR02250        72 KLYEMHVYTMGTRAYAQAIAKLIDPDGKYFGDRIISRDESGSPHTKSLLRLFPADESMVVIIDDREDVWPWHKRNLIQIE  151 (156)
T ss_pred             hhcEEEEEeCCcHHHHHHHHHHhCcCCCeeccEEEEeccCCCCccccHHHHcCCCcccEEEEeCCHHHhhcCccCEEEeC
Confidence            99999999999999999999999999999999999999999889999954 57899999999999999999999999999


Q ss_pred             ccccc
Q 044162          247 SYDFF  251 (369)
Q Consensus       247 ~y~fF  251 (369)
                      ||.||
T Consensus       152 ~~~~f  156 (156)
T TIGR02250       152 PYNYF  156 (156)
T ss_pred             CcccC
Confidence            99998

This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.

>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]

Probab=100.00  E-value=2.2e-35  Score=278.45  Aligned_cols=172  Identities=29%  Similarity=0.406  Sum_probs=146.9

Q ss_pred             hhhhcCCceEEEEeCCCceeeecc-CCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEc--CceEEEEeCccHHHH
Q 044162           86 KNLLRMRKLHLVLDLDHTLLHSRL-IGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIG--DNVLLVKLRPFVRSF  162 (369)
Q Consensus        86 ~~ll~~~Kl~LVLDLD~TLIhs~~-~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~--~~~~~vklRPgl~eF  162 (369)
                      .++...+|.+|||||||||+||+. .+...++                      .-.+.+.+.  ...+||.+|||+++|
T Consensus        82 ~~~~~~~kk~lVLDLDeTLvHss~~~~~~~~~----------------------d~~~~v~~~~~~~~~yV~kRP~vdeF  139 (262)
T KOG1605|consen   82 LRLATVGRKTLVLDLDETLVHSSLNLKPIVNA----------------------DFTVPVEIDGHIHQVYVRKRPHVDEF  139 (262)
T ss_pred             cccccCCCceEEEeCCCcccccccccCCCCCc----------------------ceeeeeeeCCcceEEEEEcCCCHHHH
Confidence            445588999999999999999995 2211110                      011222222  348999999999999


Q ss_pred             HHHHhcCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccC---cccccccccCCCCCcEEEEeCCccccccCC
Q 044162          163 LEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQ---KERKYLDLVLGQENSIVIVDDTESVWGGRV  239 (369)
Q Consensus       163 L~~ls~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~---~~~KdL~~l~~~~~~vvIvDD~~~~w~~~~  239 (369)
                      |+.++++||+++||++.+.||.+|++.|||.+++|.+|+| |++|..   .|+|||..+++++++||||||+|.++..||
T Consensus       140 L~~~s~~~e~v~FTAs~~~Ya~~v~D~LD~~~~i~~~Rly-R~~C~~~~g~yvKdls~~~~dL~~viIiDNsP~sy~~~p  218 (262)
T KOG1605|consen  140 LSRVSKWYELVLFTASLEVYADPLLDILDPDRKIISHRLY-RDSCTLKDGNYVKDLSVLGRDLSKVIIVDNSPQSYRLQP  218 (262)
T ss_pred             HHHhHHHHHHHHHHhhhHHHHHHHHHHccCCCCeeeeeec-ccceEeECCcEEEEcceeccCcccEEEEcCChHHhccCc
Confidence            9999999999999999999999999999998889999998 999975   589999999999999999999999999999


Q ss_pred             CceEEeCcccccccccCCCCCcccccccCCcccchHHHHHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHH
Q 044162          240 ENLITVGSYDFFKDKKKNDCKSYSEQMSDESESDGALANILRALKAVHALYFDNPGNHAAGRDVRSCLAKI  310 (369)
Q Consensus       240 ~N~I~I~~y~fF~~~~~~~~~s~~e~~~de~~~D~~L~~l~~~L~~ih~~ff~~~~~~~~~~DVr~il~~~  310 (369)
                      +|+|+|++|.  .                 +..|.+|+.|+++|+++..           .+|||++++..
T Consensus       219 ~NgIpI~sw~--~-----------------d~~D~eLL~LlpfLe~L~~-----------~~Dvr~~l~~~  259 (262)
T KOG1605|consen  219 ENGIPIKSWF--D-----------------DPTDTELLKLLPFLEALAF-----------VDDVRPILARR  259 (262)
T ss_pred             cCCCcccccc--c-----------------CCChHHHHHHHHHHHHhcc-----------cccHHHHHHHh
Confidence            9999999996  2                 5779999999999999975           68999999864

>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain

Probab=100.00  E-value=6.6e-34  Score=252.84  Aligned_cols=154  Identities=30%  Similarity=0.373  Sum_probs=131.0

Q ss_pred             ceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEc--CceEEEEeCccHHHHHHHHhcCc
Q 044162           93 KLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIG--DNVLLVKLRPFVRSFLEEASRLF  170 (369)
Q Consensus        93 Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~--~~~~~vklRPgl~eFL~~ls~~y  170 (369)
                      |++||||||||||||+..+... .                     ....+.+...  ...+|+++|||+.+||+++++.|
T Consensus         1 k~~lvlDLDeTLi~~~~~~~~~-~---------------------~~~~~~~~~~~~~~~~~v~~RPgl~eFL~~l~~~y   58 (162)
T TIGR02251         1 KKTLVLDLDETLVHSTFKMPKV-D---------------------ADFKVPVLIDGKIIPVYVFKRPHVDEFLERVSKWY   58 (162)
T ss_pred             CcEEEEcCCCCcCCCCCCCCCC-C---------------------CceEEEEEecCcEEEEEEEECCCHHHHHHHHHhcC
Confidence            6899999999999997754210 0                     0111222211  23899999999999999999999


Q ss_pred             cEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccC---cccccccccCCCCCcEEEEeCCccccccCCCceEEeCc
Q 044162          171 EISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQ---KERKYLDLVLGQENSIVIVDDTESVWGGRVENLITVGS  247 (369)
Q Consensus       171 Ei~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~---~~~KdL~~l~~~~~~vvIvDD~~~~w~~~~~N~I~I~~  247 (369)
                      ||+|||++++.||++|++.|||.+.+|..+++ |++|..   .+.|+|+.++++++++|||||++..|..+++|+|+|.+
T Consensus        59 ei~I~Ts~~~~yA~~il~~ldp~~~~f~~~l~-r~~~~~~~~~~~K~L~~l~~~~~~vIiVDD~~~~~~~~~~NgI~i~~  137 (162)
T TIGR02251        59 ELVIFTASLEEYADPVLDILDRGGKVISRRLY-RESCVFTNGKYVKDLSLVGKDLSKVIIIDNSPYSYSLQPDNAIPIKS  137 (162)
T ss_pred             EEEEEcCCcHHHHHHHHHHHCcCCCEEeEEEE-ccccEEeCCCEEeEchhcCCChhhEEEEeCChhhhccCccCEeecCC
Confidence            99999999999999999999999888987665 999863   47999999999999999999999999999999999999


Q ss_pred             ccccccccCCCCCcccccccCCcccchHHHHHHHHHHHHHH
Q 044162          248 YDFFKDKKKNDCKSYSEQMSDESESDGALANILRALKAVHA  288 (369)
Q Consensus       248 y~fF~~~~~~~~~s~~e~~~de~~~D~~L~~l~~~L~~ih~  288 (369)
                      |.     |              +.+|.+|..|+++|+.|+.
T Consensus       138 f~-----~--------------~~~D~~L~~l~~~L~~l~~  159 (162)
T TIGR02251       138 WF-----G--------------DPNDTELLNLIPFLEGLRF  159 (162)
T ss_pred             CC-----C--------------CCCHHHHHHHHHHHHHHhc
Confidence            97     2              6799999999999999986

This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.

>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear

Probab=100.00  E-value=7.9e-33  Score=243.71  Aligned_cols=150  Identities=33%  Similarity=0.420  Sum_probs=113.4

Q ss_pred             eEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHHHHHHHhcCccEE
Q 044162           94 LHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEASRLFEIS  173 (369)
Q Consensus        94 l~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~eFL~~ls~~yEi~  173 (369)
                      ++|||||||||||+...+..+.                  +      ..... ....+++++|||+++||+++++.|||+
T Consensus         1 k~LVlDLD~TLv~~~~~~~~~~------------------~------~~~~~-~~~~~~v~~RP~l~~FL~~l~~~~ev~   55 (159)
T PF03031_consen    1 KTLVLDLDGTLVHSSSKSPLPY------------------D------FKIID-QRGGYYVKLRPGLDEFLEELSKHYEVV   55 (159)
T ss_dssp             EEEEEE-CTTTEEEESSTCTT-------------------S------EEEET-EEEEEEEEE-TTHHHHHHHHHHHCEEE
T ss_pred             CEEEEeCCCcEEEEeecCCCCc------------------c------cceec-cccceeEeeCchHHHHHHHHHHhceEE
Confidence            5899999999999997653210                  0      00000 123789999999999999999999999


Q ss_pred             EecCCcHHHHHHHHHHhCCCCCcccceEEeeccccC---cccccccccCCCCCcEEEEeCCccccccCCCceEEeCcccc
Q 044162          174 VCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQ---KERKYLDLVLGQENSIVIVDDTESVWGGRVENLITVGSYDF  250 (369)
Q Consensus       174 I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~---~~~KdL~~l~~~~~~vvIvDD~~~~w~~~~~N~I~I~~y~f  250 (369)
                      |||++++.||++|++.|||++.+|.+ +++|++|..   .+.|||+.+++++++||||||++.+|..+++|+|+|++|. 
T Consensus        56 i~T~~~~~ya~~v~~~ldp~~~~~~~-~~~r~~~~~~~~~~~KdL~~l~~~~~~vvivDD~~~~~~~~~~N~i~v~~f~-  133 (159)
T PF03031_consen   56 IWTSASEEYAEPVLDALDPNGKLFSR-RLYRDDCTFDKGSYIKDLSKLGRDLDNVVIVDDSPRKWALQPDNGIPVPPFF-  133 (159)
T ss_dssp             EE-SS-HHHHHHHHHHHTTTTSSEEE-EEEGGGSEEETTEEE--GGGSSS-GGGEEEEES-GGGGTTSGGGEEE----S-
T ss_pred             EEEeehhhhhhHHHHhhhhhcccccc-ccccccccccccccccchHHHhhccccEEEEeCCHHHeeccCCceEEecccc-
Confidence            99999999999999999998889965 556998863   2579999999999999999999999998999999999996 


Q ss_pred             cccccCCCCCcccccccCCc-ccchHHHHHHHHHHHHHH
Q 044162          251 FKDKKKNDCKSYSEQMSDES-ESDGALANILRALKAVHA  288 (369)
Q Consensus       251 F~~~~~~~~~s~~e~~~de~-~~D~~L~~l~~~L~~ih~  288 (369)
                          +              + .+|++|..|+++|++++.
T Consensus       134 ----~--------------~~~~D~~L~~l~~~L~~l~~  154 (159)
T PF03031_consen  134 ----G--------------DTPNDRELLRLLPFLEELAK  154 (159)
T ss_dssp             ----S--------------CHTT--HHHHHHHHHHHHHT
T ss_pred             ----C--------------CCcchhHHHHHHHHHHHhCc
Confidence                1              3 689999999999999986

It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....

>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245

Probab=99.97  E-value=2.2e-30  Score=236.00  Aligned_cols=159  Identities=19%  Similarity=0.226  Sum_probs=127.8

Q ss_pred             hhhcCCceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHHHHHHH
Q 044162           87 NLLRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEA  166 (369)
Q Consensus        87 ~ll~~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~eFL~~l  166 (369)
                      +..+.+|.+|||||||||||+.....                                     ..++.+|||+++||+.+
T Consensus        15 ~~~~~~kklLVLDLDeTLvh~~~~~~-------------------------------------~~~~~kRP~l~eFL~~~   57 (195)
T TIGR02245        15 NPPREGKKLLVLDIDYTLFDHRSPAE-------------------------------------TGEELMRPYLHEFLTSA   57 (195)
T ss_pred             CCCCCCCcEEEEeCCCceEcccccCC-------------------------------------CceEEeCCCHHHHHHHH
Confidence            34578899999999999999753210                                     35688999999999999


Q ss_pred             hcCccEEEecCCcHHHHHHHHHHhCCCCC-cccceEEeeccccC---------c-ccccccccC------CCCCcEEEEe
Q 044162          167 SRLFEISVCTLGNREYATRAVKLLDPDCK-YFNSRIITREDFKQ---------K-ERKYLDLVL------GQENSIVIVD  229 (369)
Q Consensus       167 s~~yEi~I~T~g~~~YA~~i~~~lDp~~~-~f~~Ri~srd~~~~---------~-~~KdL~~l~------~~~~~vvIvD  229 (369)
                      ++.|||+|||++++.||+.+++.|++.+. -+.-+.+ ++.|..         . ++|+|+.++      .+++++||||
T Consensus        58 ~~~feIvVwTAa~~~ya~~~l~~l~~~~~~~~~i~~~-ld~~~~~~~~~~~~g~~~vKdL~~lw~~l~~~~~~~ntiiVD  136 (195)
T TIGR02245        58 YEDYDIVIWSATSMKWIEIKMTELGVLTNPNYKITFL-LDSTAMITVHTPRRGKFDVKPLGVIWALLPEFYSMKNTIMFD  136 (195)
T ss_pred             HhCCEEEEEecCCHHHHHHHHHHhcccCCccceEEEE-eccccceeeEeeccCcEEEeecHHhhhhcccCCCcccEEEEe
Confidence            99999999999999999999999976432 1222233 455521         1 489999773      2789999999


Q ss_pred             CCccccccCCCceEEeCcccccccccCCCCCcccccccCCcccchHHHHHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHH
Q 044162          230 DTESVWGGRVENLITVGSYDFFKDKKKNDCKSYSEQMSDESESDGALANILRALKAVHALYFDNPGNHAAGRDVRSCLAK  309 (369)
Q Consensus       230 D~~~~w~~~~~N~I~I~~y~fF~~~~~~~~~s~~e~~~de~~~D~~L~~l~~~L~~ih~~ff~~~~~~~~~~DVr~il~~  309 (369)
                      |++.++..||+|+|+|+||. ....              .+.+|.+|..|+++|+.|+.           .+|||++...
T Consensus       137 d~p~~~~~~P~N~i~I~~f~-~~~~--------------~~~~D~eL~~L~~yL~~la~-----------~~Dvr~~~~~  190 (195)
T TIGR02245       137 DLRRNFLMNPQNGLKIRPFK-KAHA--------------NRGTDQELLKLTQYLKTIAE-----------LEDFSSLDHK  190 (195)
T ss_pred             CCHHHHhcCCCCccccCCcc-ccCC--------------CCcccHHHHHHHHHHHHHhc-----------Ccccchhhhc
Confidence            99999999999999999995 1111              25799999999999999986           7999998763

This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.

>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]

Probab=99.92  E-value=1.6e-25  Score=215.95  Aligned_cols=157  Identities=23%  Similarity=0.309  Sum_probs=142.8

Q ss_pred             cCCceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHHHHHHHhcC
Q 044162           90 RMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEASRL  169 (369)
Q Consensus        90 ~~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~eFL~~ls~~  169 (369)
                      .+++++|||||.++|||..+.-.                                    ..|.+++|||++.||..++++
T Consensus       186 ~Qp~yTLVleledvLVhpdws~~------------------------------------tGwRf~kRPgvD~FL~~~a~~  229 (393)
T KOG2832|consen  186 EQPPYTLVLELEDVLVHPDWSYK------------------------------------TGWRFKKRPGVDYFLGHLAKY  229 (393)
T ss_pred             cCCCceEEEEeeeeEeccchhhh------------------------------------cCceeccCchHHHHHHhhccc
Confidence            46899999999999999876320                                    168899999999999999999


Q ss_pred             ccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccC---cccccccccCCCCCcEEEEeCCccccccCCCceEEeC
Q 044162          170 FEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQ---KERKYLDLVLGQENSIVIVDDTESVWGGRVENLITVG  246 (369)
Q Consensus       170 yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~---~~~KdL~~l~~~~~~vvIvDD~~~~w~~~~~N~I~I~  246 (369)
                      |||+|||+....||.++++.|||.| ++++|++ |+.+..   .++|||+.|+||+++||+||-++.....||+|.|.++
T Consensus       230 yEIVi~sse~gmt~~pl~d~lDP~g-~IsYkLf-r~~t~y~~G~HvKdls~LNRdl~kVivVd~d~~~~~l~P~N~l~l~  307 (393)
T KOG2832|consen  230 YEIVVYSSEQGMTVFPLLDALDPKG-YISYKLF-RGATKYEEGHHVKDLSKLNRDLQKVIVVDFDANSYKLQPENMLPLE  307 (393)
T ss_pred             ceEEEEecCCccchhhhHhhcCCcc-eEEEEEe-cCcccccCccchhhhhhhccccceeEEEEccccccccCcccccccC
Confidence            9999999999999999999999996 7889999 888765   4899999999999999999999999999999999999


Q ss_pred             cccccccccCCCCCcccccccCCcccchHHHHHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHH
Q 044162          247 SYDFFKDKKKNDCKSYSEQMSDESESDGALANILRALKAVHALYFDNPGNHAAGRDVRSCLAKIRS  312 (369)
Q Consensus       247 ~y~fF~~~~~~~~~s~~e~~~de~~~D~~L~~l~~~L~~ih~~ff~~~~~~~~~~DVr~il~~~r~  312 (369)
                      ||.     |              +++|..|.+|+++|+.||.         .+..|||++|+.+.+
T Consensus       308 ~W~-----G--------------n~dDt~L~dL~~FL~~ia~---------~~~eDvR~vL~~y~~  345 (393)
T KOG2832|consen  308 PWS-----G--------------NDDDTSLFDLLAFLEYIAQ---------QQVEDVRPVLQSYSQ  345 (393)
T ss_pred             cCC-----C--------------CcccchhhhHHHHHHHHHH---------ccHHHHHHHHHHhcc
Confidence            997     3              7888999999999999997         568999999998765

>smart00577 CPDc catalytic domain of ctd-like phosphatases

Probab=99.91  E-value=5.8e-24  Score=186.00  Aligned_cols=140  Identities=34%  Similarity=0.400  Sum_probs=113.4

Q ss_pred             CceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEc--CceEEEEeCccHHHHHHHHhcC
Q 044162           92 RKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIG--DNVLLVKLRPFVRSFLEEASRL  169 (369)
Q Consensus        92 ~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~--~~~~~vklRPgl~eFL~~ls~~  169 (369)
                      ||++|||||||||||+...+.. ++.              .     ..........  ...+++++|||+.+||+++++.
T Consensus         1 ~k~~lvldld~tl~~~~~~~~~-~~~--------------~-----~~~~~~~~~~~~~~~~~v~l~pG~~e~L~~L~~~   60 (148)
T smart00577        1 KKKTLVLDLDETLVHSTHRSFK-EWT--------------N-----RDFIVPVLIDGHPHGVYVKKRPGVDEFLKRASEL   60 (148)
T ss_pred             CCcEEEEeCCCCeECCCCCcCC-CCC--------------c-----cceEEEEEeCCceEEEEEEECCCHHHHHHHHHhc
Confidence            6999999999999999753321 110              0     1111222111  3378999999999999999999


Q ss_pred             ccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccC---cccccccccCCCCCcEEEEeCCccccccCCCceEEeC
Q 044162          170 FEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQ---KERKYLDLVLGQENSIVIVDDTESVWGGRVENLITVG  246 (369)
Q Consensus       170 yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~---~~~KdL~~l~~~~~~vvIvDD~~~~w~~~~~N~I~I~  246 (369)
                      |+++|||++.+.||+.+++.+|+.+.+| +++++++++..   .+.|+|++++.+++.+|+|||++..|..++.|+|.|+
T Consensus        61 ~~l~I~Ts~~~~~~~~il~~l~~~~~~f-~~i~~~~d~~~~KP~~~k~l~~l~~~p~~~i~i~Ds~~~~~aa~~ngI~i~  139 (148)
T smart00577       61 FELVVFTAGLRMYADPVLDLLDPKKYFG-YRRLFRDECVFVKGKYVKDLSLLGRDLSNVIIIDDSPDSWPFHPENLIPIK  139 (148)
T ss_pred             cEEEEEeCCcHHHHHHHHHHhCcCCCEe-eeEEECccccccCCeEeecHHHcCCChhcEEEEECCHHHhhcCccCEEEec
Confidence            9999999999999999999999976444 67899998864   3788999999999999999999999999999999999


Q ss_pred             cccccc
Q 044162          247 SYDFFK  252 (369)
Q Consensus       247 ~y~fF~  252 (369)
                      ||.++.
T Consensus       140 ~f~~~~  145 (148)
T smart00577      140 PWFGDP  145 (148)
T ss_pred             CcCCCC
Confidence            998443

>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]

Probab=99.81  E-value=2.9e-20  Score=183.95  Aligned_cols=170  Identities=27%  Similarity=0.335  Sum_probs=140.6

Q ss_pred             hcCCceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHHHHHHHhc
Q 044162           89 LRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEASR  168 (369)
Q Consensus        89 l~~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~eFL~~ls~  168 (369)
                      -...+.+|++|||+||+|+.....  ..++           |.... + ...+      ...+||..|||+.+||..+++
T Consensus       208 ~~~~~k~L~l~lde~l~~S~~~~~--~~~d-----------f~~~~-e-~~~~------~~~~~v~kRp~l~~fl~~ls~  266 (390)
T COG5190         208 STSPKKTLVLDLDETLVHSSFRYI--TLLD-----------FLVKV-E-ISLL------QHLVYVSKRPELDYFLGKLSK  266 (390)
T ss_pred             CCCCccccccCCCccceeeccccc--cccc-----------hhhcc-c-cccc------eeEEEEcCChHHHHHHhhhhh
Confidence            456889999999999999987532  1111           11100 0 0001      237999999999999999999


Q ss_pred             CccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccC---cccccccccCCCCCcEEEEeCCccccccCCCceEEe
Q 044162          169 LFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQ---KERKYLDLVLGQENSIVIVDDTESVWGGRVENLITV  245 (369)
Q Consensus       169 ~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~---~~~KdL~~l~~~~~~vvIvDD~~~~w~~~~~N~I~I  245 (369)
                      +|++++||+..+.||++|+++||+.+ .|++|+| |.+|..   .|+|||..++++...|+|||++|..|..++.|.|+|
T Consensus       267 ~~~l~~ft~s~~~y~~~v~d~l~~~k-~~~~~lf-r~sc~~~~G~~ikDis~i~r~l~~viiId~~p~SY~~~p~~~i~i  344 (390)
T COG5190         267 IHELVYFTASVKRYADPVLDILDSDK-VFSHRLF-RESCVSYLGVYIKDISKIGRSLDKVIIIDNSPASYEFHPENAIPI  344 (390)
T ss_pred             hEEEEEEecchhhhcchHHHhccccc-eeehhhh-cccceeccCchhhhHHhhccCCCceEEeeCChhhhhhCccceecc
Confidence            99999999999999999999999997 8888888 888864   389999999999999999999999999999999999


Q ss_pred             CcccccccccCCCCCcccccccCCcccchHHHHHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHH
Q 044162          246 GSYDFFKDKKKNDCKSYSEQMSDESESDGALANILRALKAVHALYFDNPGNHAAGRDVRSCLAK  309 (369)
Q Consensus       246 ~~y~fF~~~~~~~~~s~~e~~~de~~~D~~L~~l~~~L~~ih~~ff~~~~~~~~~~DVr~il~~  309 (369)
                      ++|.                   +++.|.+|.+++++|..|..         .+..||+.++..
T Consensus       345 ~~W~-------------------~d~~d~el~~ll~~le~L~~---------~~~~d~~~~l~~  380 (390)
T COG5190         345 EKWI-------------------SDEHDDELLNLLPFLEDLPD---------RDLKDVSSILQS  380 (390)
T ss_pred             Cccc-------------------ccccchhhhhhccccccccc---------ccchhhhhhhhh
Confidence            9997                   25689999999999998875         357889888764

>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]

Probab=99.79  E-value=1.5e-19  Score=178.92  Aligned_cols=273  Identities=23%  Similarity=0.307  Sum_probs=202.1

Q ss_pred             ccCHHHHHHHhhhhhhhhhcCCceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCce
Q 044162           71 RYSIDEISRLKKRNTKNLLRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNV  150 (369)
Q Consensus        71 ~vs~~~a~~~~~~~~~~ll~~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~  150 (369)
                      +++..+|.+.+.+...+|-.++++.||+|+|+|.+||+.++..+.+.++....  .+..+.. .        .+.....+
T Consensus         4 ~i~~~~~~~~~~~~~~~l~q~~~~~l~~~~~~~~~h~~~~~~~p~~~~~~~~~--~~~~~~~-~--------~~~~~~~~   72 (390)
T COG5190           4 NISHEEASRTKKESMEALRQDKKLILVVDLDQTIIHTTVDPNDPNNVNQSLER--TLKSVND-R--------DPVQEKCA   72 (390)
T ss_pred             eeEeeehhhhhhhHHHHhhcCcccccccccccceecccccCCCCCchhhhhhc--cccchhc-c--------cccccccc
Confidence            67888999999999999999999999999999999999988545444421110  0110110 0        01111348


Q ss_pred             EEEEeCccHHHHHHHHhcCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCccccccccc-CCCCCcEEEEe
Q 044162          151 LLVKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKYLDLV-LGQENSIVIVD  229 (369)
Q Consensus       151 ~~vklRPgl~eFL~~ls~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~~~KdL~~l-~~~~~~vvIvD  229 (369)
                      |++|.||++..|+...++.||+++||+|++.||..+++++||.|++|.+|+.+++......+|.++++ +.+.++++++|
T Consensus        73 ~~~k~~~~l~~~~~~i~~~~e~~~~~~~~~~~~~~~~~i~d~~g~~~~d~~~~~~~~~~~~~~s~~~l~p~~~n~~vi~~  152 (390)
T COG5190          73 YYVKARPKLFPFLTKISPLYELHIYTMGTRAYAERIAKIIDPTGKLFNDRILSRDESGSLSQKSLSRLFPKDQNMVVIID  152 (390)
T ss_pred             ceeeecccccchhhhhchhcceeeEeeccccchhhhhhcccccccccccccccccccccchhhhhhhcCccccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999888888999975 58999999999


Q ss_pred             CCcccc---ccCCCceEEeCcccccccccCC--------------C----CCccccc-----------------------
Q 044162          230 DTESVW---GGRVENLITVGSYDFFKDKKKN--------------D----CKSYSEQ-----------------------  265 (369)
Q Consensus       230 D~~~~w---~~~~~N~I~I~~y~fF~~~~~~--------------~----~~s~~e~-----------------------  265 (369)
                      |++++|   .. -.|.+...++..+...-++              +    ...+...                       
T Consensus       153 d~~~~~~~~d~-~~~~v~~~~~~~~~~~~~i~d~~~~~~~~~r~~~~~~l~~~~~~~~~~~k~L~l~lde~l~~S~~~~~  231 (390)
T COG5190         153 DRGDVWGVGDM-NSNFVAKSPFSKYESDKDIVDLPRLERKLSREAGIDTLEPPVSKSTSPKKTLVLDLDETLVHSSFRYI  231 (390)
T ss_pred             cccccCCccch-hhhhhcccccccccccccccCcccccchhhhhcccccccchhhcCCCCccccccCCCccceeeccccc
Confidence            999999   44 3678888885433332220              0    0000000                       


Q ss_pred             -------ccCCc--------ccchHHHHHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHhhhcCceEEecccCCCCC
Q 044162          266 -------MSDES--------ESDGALANILRALKAVHALYFDNPGNHAAGRDVRSCLAKIRSRILMGCTILFGDDDFEEL  330 (369)
Q Consensus       266 -------~~de~--------~~D~~L~~l~~~L~~ih~~ff~~~~~~~~~~DVr~il~~~r~~VL~g~~ivFSg~~p~~~  330 (369)
                             +.+..        ..|.+|..++..|.++|.-+|...........|..+|...+  ++++|.+.++++++.+.
T Consensus       232 ~~~df~~~~e~~~~~~~~~v~kRp~l~~fl~~ls~~~~l~~ft~s~~~y~~~v~d~l~~~k--~~~~~lfr~sc~~~~G~  309 (390)
T COG5190         232 TLLDFLVKVEISLLQHLVYVSKRPELDYFLGKLSKIHELVYFTASVKRYADPVLDILDSDK--VFSHRLFRESCVSYLGV  309 (390)
T ss_pred             cccchhhccccccceeEEEEcCChHHHHHHhhhhhhEEEEEEecchhhhcchHHHhccccc--eeehhhhcccceeccCc
Confidence                   01112        57899999999999999877766433344556999999988  99999999999999874


Q ss_pred             hhHHHHHHhcCCEEEeccCCCceEEEecCCCcccc
Q 044162          331 PLTWSRAEEMGAICTLVTDASVTHVVSSNTQSETF  365 (369)
Q Consensus       331 p~lw~la~~~GA~v~~~i~~~vTHvVa~~~gT~K~  365 (369)
                       .+.-++.-.       .+=.-||.|+.++-|.+.
T Consensus       310 -~ikDis~i~-------r~l~~viiId~~p~SY~~  336 (390)
T COG5190         310 -YIKDISKIG-------RSLDKVIIIDNSPASYEF  336 (390)
T ss_pred             -hhhhHHhhc-------cCCCceEEeeCChhhhhh
Confidence             222222211       333568888887766543

>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A

Probab=98.76  E-value=6.5e-09  Score=77.64  Aligned_cols=52  Identities=17%  Similarity=0.181  Sum_probs=43.6

Q ss_pred             ceEEecccCCCCChhHHHHHHhcCCEEEeccCCCceEEEecCCCcccccccC
Q 044162          318 CTILFGDDDFEELPLTWSRAEEMGAICTLVTDASVTHVVSSNTQSETFEWAE  369 (369)
Q Consensus       318 ~~ivFSg~~p~~~p~lw~la~~~GA~v~~~i~~~vTHvVa~~~gT~K~~~a~  369 (369)
                      |.|.|||+.|.+...++++++++||++..+++..+|||||.+..++|++.|+
T Consensus         1 ~~i~~sg~~~~~~~~l~~~i~~~Gg~~~~~lt~~~THLI~~~~~~~K~~~A~   52 (63)
T PF12738_consen    1 VVICFSGFSGKERSQLRKLIEALGGKYSKDLTKKTTHLICSSPEGKKYRKAK   52 (63)
T ss_dssp             -EEEEEEB-TTTCCHHHHHHHCTT-EEESSSSTT-SEEEEES--HHHHHHHH
T ss_pred             CEEEECCCCHHHHHHHHHHHHHCCCEEeccccCCceEEEEeCCCcHHHHHHH
Confidence            5789999999888899999999999999999999999999999999999884

>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1

Probab=98.24  E-value=1e-06  Score=67.36  Aligned_cols=58  Identities=21%  Similarity=0.300  Sum_probs=48.7

Q ss_pred             HHhhhcCceEEecccCCCCChhHHHHHHhcCCEEEeccCCCceEEEecCC--Cccccccc
Q 044162          311 RSRILMGCTILFGDDDFEELPLTWSRAEEMGAICTLVTDASVTHVVSSNT--QSETFEWA  368 (369)
Q Consensus       311 r~~VL~g~~ivFSg~~p~~~p~lw~la~~~GA~v~~~i~~~vTHvVa~~~--gT~K~~~a  368 (369)
                      +..+|+||.+.|++.-+..+..++++++++||++..++++.+||+|+.+.  .+.|...|
T Consensus         2 ~~~~F~g~~f~i~~~~~~~~~~l~~~i~~~GG~v~~~~~~~~thvI~~~~~~~~~k~~~~   61 (78)
T PF00533_consen    2 KPKIFEGCTFCISGFDSDEREELEQLIKKHGGTVSNSFSKKTTHVIVGNPNKRTKKYKAA   61 (78)
T ss_dssp             STTTTTTEEEEESSTSSSHHHHHHHHHHHTTEEEESSSSTTSSEEEESSSHCCCHHHHHH
T ss_pred             CCCCCCCEEEEEccCCCCCHHHHHHHHHHcCCEEEeecccCcEEEEeCCCCCccHHHHHH
Confidence            46799999999965554445589999999999999999999999999987  77776654

The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....

>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC

Probab=98.10  E-value=2.6e-06  Score=72.70  Aligned_cols=80  Identities=15%  Similarity=0.157  Sum_probs=58.7

Q ss_pred             EeCccHHHHHHHHh-cCccEEEecCC-cHHHHHHHHHHhCC------CCCcccceEEeeccccC--cccccccccC--CC
Q 044162          154 KLRPFVRSFLEEAS-RLFEISVCTLG-NREYATRAVKLLDP------DCKYFNSRIITREDFKQ--KERKYLDLVL--GQ  221 (369)
Q Consensus       154 klRPgl~eFL~~ls-~~yEi~I~T~g-~~~YA~~i~~~lDp------~~~~f~~Ri~srd~~~~--~~~KdL~~l~--~~  221 (369)
                      ++.||+.++|+.+. +.+.++|.|++ .+.|+..+++...+      -..+|.. +++.++...  .+.+-++.++  ..
T Consensus        29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~~~~~i~~l~~~f~~-~~~~~~~pkp~~~~~a~~~lg~~~~  107 (128)
T TIGR01681        29 VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFEDFGIIFPLAEYFDP-LTIGYWLPKSPRLVEIALKLNGVLK  107 (128)
T ss_pred             HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhccccccchhhHhhhhh-hhhcCCCcHHHHHHHHHHHhcCCCC
Confidence            57899999999996 68999999999 89999999988762      1235543 332322211  2445566678  78


Q ss_pred             CCcEEEEeCCccc
Q 044162          222 ENSIVIVDDTESV  234 (369)
Q Consensus       222 ~~~vvIvDD~~~~  234 (369)
                      .+.+++|||++..
T Consensus       108 p~~~l~igDs~~n  120 (128)
T TIGR01681       108 PKSILFVDDRPDN  120 (128)
T ss_pred             cceEEEECCCHhH
Confidence            9999999999753

No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.

>PLN03243 haloacid dehalogenase-like hydrolase; Provisional

Probab=98.00  E-value=6.8e-06  Score=78.57  Aligned_cols=92  Identities=17%  Similarity=0.257  Sum_probs=72.0

Q ss_pred             EEEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccC------cccccccccCCCCCc
Q 044162          152 LVKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQ------KERKYLDLVLGQENS  224 (369)
Q Consensus       152 ~vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~------~~~KdL~~l~~~~~~  224 (369)
                      .+.+.||+.++|+.+. ..|.++|-|++++.++..+++.++-.. ||. .+++.++...      .+.+-+++++...+.
T Consensus       107 ~~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~-~Fd-~ii~~~d~~~~KP~Pe~~~~a~~~l~~~p~~  184 (260)
T PLN03243        107 LYRLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAVGMEG-FFS-VVLAAEDVYRGKPDPEMFMYAAERLGFIPER  184 (260)
T ss_pred             CcccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHcCCHh-hCc-EEEecccCCCCCCCHHHHHHHHHHhCCChHH
Confidence            3678999999999998 679999999999999999999988664 785 4777776542      145566778888899


Q ss_pred             EEEEeCCccccccCCCceEEe
Q 044162          225 IVIVDDTESVWGGRVENLITV  245 (369)
Q Consensus       225 vvIvDD~~~~w~~~~~N~I~I  245 (369)
                      +++|+|+..-.......|+.+
T Consensus       185 ~l~IgDs~~Di~aA~~aG~~~  205 (260)
T PLN03243        185 CIVFGNSNSSVEAAHDGCMKC  205 (260)
T ss_pred             eEEEcCCHHHHHHHHHcCCEE
Confidence            999999986554444555543

>TIGR01684 viral_ppase viral phosphatase

Probab=97.95  E-value=2.4e-05  Score=75.65  Aligned_cols=88  Identities=24%  Similarity=0.340  Sum_probs=66.7

Q ss_pred             CHHHHHHHhhhhhhhhhcCCceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEE
Q 044162           73 SIDEISRLKKRNTKNLLRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLL  152 (369)
Q Consensus        73 s~~~a~~~~~~~~~~ll~~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~  152 (369)
                      +..|...++.   ..+.-.....+|+|||||||....                                          -
T Consensus       109 ~~~~v~~l~~---~~~~~~~~kvIvFDLDgTLi~~~~------------------------------------------~  143 (301)
T TIGR01684       109 ELEEIYNLNL---PSKVFEPPHVVVFDLDSTLITDEE------------------------------------------P  143 (301)
T ss_pred             cHhhhhhccc---cccccccceEEEEecCCCCcCCCC------------------------------------------c
Confidence            3344444433   335556777999999999997532                                          1


Q ss_pred             EEeC-ccHHHHHHHHhc-CccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccc
Q 044162          153 VKLR-PFVRSFLEEASR-LFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDF  207 (369)
Q Consensus       153 vklR-Pgl~eFL~~ls~-~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~  207 (369)
                      +.+| ||+.+.|+++.+ .+.++|+|++.+.+|..+++.++..+ +| +.|++.++.
T Consensus       144 v~irdPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lGLd~-YF-dvIIs~Gdv  198 (301)
T TIGR01684       144 VRIRDPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVKLDR-YF-DIIISGGHK  198 (301)
T ss_pred             cccCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCCCc-cc-CEEEECCcc
Confidence            5568 999999999985 58999999999999999999999985 77 456655543

These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.

>TIGR01685 MDP-1 magnesium-dependent phosphatase-1

Probab=97.95  E-value=1.5e-05  Score=71.78  Aligned_cols=96  Identities=15%  Similarity=0.045  Sum_probs=68.7

Q ss_pred             eEEEEeCccHHHHHHHHh-cCccEEEecCC-cHHHHHHHHHHhCCC--C------CcccceEEeeccccC-cc----ccc
Q 044162          150 VLLVKLRPFVRSFLEEAS-RLFEISVCTLG-NREYATRAVKLLDPD--C------KYFNSRIITREDFKQ-KE----RKY  214 (369)
Q Consensus       150 ~~~vklRPgl~eFL~~ls-~~yEi~I~T~g-~~~YA~~i~~~lDp~--~------~~f~~Ri~srd~~~~-~~----~Kd  214 (369)
                      ..-+.++||+.++|+.+. +.+.+.|-|++ .+.++..+++.++-.  |      .+|.. +++.++... ..    .+.
T Consensus        41 ~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~~~l~~~~~~~~~~~~Fd~-iv~~~~~~~~kp~~~i~~~  119 (174)
T TIGR01685        41 GTEVTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGTFEITYAGKTVPMHSLFDD-RIEIYKPNKAKQLEMILQK  119 (174)
T ss_pred             CCEEEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHhCCcCCCCCcccHHHhcee-eeeccCCchHHHHHHHHHH
Confidence            346788999999999997 77999999988 999999999998854  2      47754 444444221 11    111


Q ss_pred             ccc-c--CCCCCcEEEEeCCccccccCCCceEEeC
Q 044162          215 LDL-V--LGQENSIVIVDDTESVWGGRVENLITVG  246 (369)
Q Consensus       215 L~~-l--~~~~~~vvIvDD~~~~w~~~~~N~I~I~  246 (369)
                      +.. +  +-+.+.+++|||++.-......+++.+-
T Consensus       120 ~~~~~~~gl~p~e~l~VgDs~~di~aA~~aGi~~i  154 (174)
T TIGR01685       120 VNKVDPSVLKPAQILFFDDRTDNVREVWGYGVTSC  154 (174)
T ss_pred             hhhcccCCCCHHHeEEEcChhHhHHHHHHhCCEEE
Confidence            211 1  3678999999999987766566776653

This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.

>cd01427 HAD_like Haloacid dehalogenase-like hydrolases

Probab=97.94  E-value=1.4e-05  Score=65.85  Aligned_cols=101  Identities=24%  Similarity=0.233  Sum_probs=69.0

Q ss_pred             EEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHHHHHHHhc-CccEE
Q 044162           95 HLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEASR-LFEIS  173 (369)
Q Consensus        95 ~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~eFL~~ls~-~yEi~  173 (369)
                      ++|||+|+||+........                                    .....++|++.++|+.+.+ .+.++
T Consensus         1 ~~vfD~D~tl~~~~~~~~~------------------------------------~~~~~~~~~~~~~l~~l~~~g~~i~   44 (139)
T cd01427           1 AVLFDLDGTLLDSEPGIAE------------------------------------IEELELYPGVKEALKELKEKGIKLA   44 (139)
T ss_pred             CeEEccCCceEccCccccc------------------------------------cccCCcCcCHHHHHHHHHHCCCeEE
Confidence            4799999999987543210                                    2336789999999999986 49999


Q ss_pred             EecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc----------------------ccccccccCCCCCcEEEEeCC
Q 044162          174 VCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK----------------------ERKYLDLVLGQENSIVIVDDT  231 (369)
Q Consensus       174 I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~----------------------~~KdL~~l~~~~~~vvIvDD~  231 (369)
                      |.|++.+.++..+++.+.-.. +| ..+++.+.....                      +..-++.+....+.++.+||+
T Consensus        45 ivS~~~~~~~~~~~~~~~~~~-~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igD~  122 (139)
T cd01427          45 LATNKSRREVLELLEELGLDD-YF-DPVITSNGAAIYYPKEGLFLGGGPFDIGKPNPDKLLAALKLLGVDPEEVLMVGDS  122 (139)
T ss_pred             EEeCchHHHHHHHHHHcCCch-hh-hheeccchhhhhcccccccccccccccCCCCHHHHHHHHHHcCCChhhEEEeCCC
Confidence            999999999999999876542 33 334433322210                      011122334457889999998


Q ss_pred             cc
Q 044162          232 ES  233 (369)
Q Consensus       232 ~~  233 (369)
                      ..
T Consensus       123 ~~  124 (139)
T cd01427         123 LN  124 (139)
T ss_pred             HH
Confidence            73

The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.

>PHA03398 viral phosphatase superfamily protein; Provisional

Probab=97.90  E-value=5.1e-05  Score=73.50  Aligned_cols=78  Identities=29%  Similarity=0.399  Sum_probs=62.6

Q ss_pred             hhhhcCCceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeC-ccHHHHHH
Q 044162           86 KNLLRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLR-PFVRSFLE  164 (369)
Q Consensus        86 ~~ll~~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklR-Pgl~eFL~  164 (369)
                      ..+....+..+|+||||||+.....                                          +.+| |++.+.|+
T Consensus       121 ~~~~~~~~~~i~~D~D~TL~~~~~~------------------------------------------v~irdp~V~EtL~  158 (303)
T PHA03398        121 ESLVWEIPHVIVFDLDSTLITDEEP------------------------------------------VRIRDPFVYDSLD  158 (303)
T ss_pred             ceeEeeeccEEEEecCCCccCCCCc------------------------------------------cccCChhHHHHHH
Confidence            3445677789999999999976321                                          5578 99999999


Q ss_pred             HHhc-CccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccc
Q 044162          165 EASR-LFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDF  207 (369)
Q Consensus       165 ~ls~-~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~  207 (369)
                      ++.+ .+.+.|+|+|.++++..+++.++.. .+|. -+++.++.
T Consensus       159 eLkekGikLaIvTNg~Re~v~~~Le~lgL~-~yFD-vII~~g~i  200 (303)
T PHA03398        159 ELKERGCVLVLWSYGNREHVVHSLKETKLE-GYFD-IIICGGRK  200 (303)
T ss_pred             HHHHCCCEEEEEcCCChHHHHHHHHHcCCC-cccc-EEEECCCc
Confidence            9985 6999999999999999999999987 4773 45555543

>PRK13288 pyrophosphatase PpaX; Provisional

Probab=97.90  E-value=1.4e-05  Score=73.20  Aligned_cols=92  Identities=20%  Similarity=0.222  Sum_probs=70.5

Q ss_pred             EEEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCc
Q 044162          152 LVKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENS  224 (369)
Q Consensus       152 ~vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~  224 (369)
                      .+++.||+.++|+.+. +.+.+.|.|++.+.++..+++.++-. .||. .+++.++....      +.+-++.++.+.+.
T Consensus        80 ~~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~-~~f~-~i~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~  157 (214)
T PRK13288         80 LVTEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLD-EFFD-VVITLDDVEHAKPDPEPVLKALELLGAKPEE  157 (214)
T ss_pred             hcccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCh-hcee-EEEecCcCCCCCCCcHHHHHHHHHcCCCHHH
Confidence            4678899999999997 57999999999999999999999877 4784 57776665431      33445566777899


Q ss_pred             EEEEeCCccccccCCCceEEe
Q 044162          225 IVIVDDTESVWGGRVENLITV  245 (369)
Q Consensus       225 vvIvDD~~~~w~~~~~N~I~I  245 (369)
                      +++|+|++.-......++++.
T Consensus       158 ~~~iGDs~~Di~aa~~aG~~~  178 (214)
T PRK13288        158 ALMVGDNHHDILAGKNAGTKT  178 (214)
T ss_pred             EEEECCCHHHHHHHHHCCCeE
Confidence            999999986554444555543

>PLN02575 haloacid dehalogenase-like hydrolase

Probab=97.87  E-value=1.6e-05  Score=79.87  Aligned_cols=90  Identities=11%  Similarity=0.122  Sum_probs=70.7

Q ss_pred             EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccC------cccccccccCCCCCcE
Q 044162          153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQ------KERKYLDLVLGQENSI  225 (369)
Q Consensus       153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~------~~~KdL~~l~~~~~~v  225 (369)
                      +.+.||+.+||+.+. ..+.+.|-|++.+.+++.+++.++-. .||. .+++.++...      .+.+-++.++...+.+
T Consensus       215 ~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~lgL~-~yFd-~Iv~sddv~~~KP~Peifl~A~~~lgl~Peec  292 (381)
T PLN02575        215 YRLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSIGIR-GFFS-VIVAAEDVYRGKPDPEMFIYAAQLLNFIPERC  292 (381)
T ss_pred             CCcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCH-HHce-EEEecCcCCCCCCCHHHHHHHHHHcCCCcccE
Confidence            467899999999996 67999999999999999999999876 4885 5887777643      1445566778889999


Q ss_pred             EEEeCCccccccCCCceEE
Q 044162          226 VIVDDTESVWGGRVENLIT  244 (369)
Q Consensus       226 vIvDD~~~~w~~~~~N~I~  244 (369)
                      |+|+|+..-.......++.
T Consensus       293 l~IGDS~~DIeAAk~AGm~  311 (381)
T PLN02575        293 IVFGNSNQTVEAAHDARMK  311 (381)
T ss_pred             EEEcCCHHHHHHHHHcCCE
Confidence            9999998666443444443

>smart00292 BRCT breast cancer carboxy-terminal domain

Probab=97.84  E-value=2.8e-05  Score=58.43  Aligned_cols=53  Identities=15%  Similarity=0.178  Sum_probs=43.8

Q ss_pred             hhhcCceEEecccC-CCCChhHHHHHHhcCCEEEeccCC-CceEEEecCCCcccc
Q 044162          313 RILMGCTILFGDDD-FEELPLTWSRAEEMGAICTLVTDA-SVTHVVSSNTQSETF  365 (369)
Q Consensus       313 ~VL~g~~ivFSg~~-p~~~p~lw~la~~~GA~v~~~i~~-~vTHvVa~~~gT~K~  365 (369)
                      .+|+|+.++|+|-. +.....++++++++||++...+++ .+||+|+.+....+.
T Consensus         1 ~~f~g~~~~~~g~~~~~~~~~l~~~i~~~Gg~~~~~~~~~~~thvi~~~~~~~~~   55 (80)
T smart00292        1 KLFKGKVFVITGKFDKNERDELKELIEALGGKVTSSLSSKTTTHVIVGSPEGGKL   55 (80)
T ss_pred             CccCCeEEEEeCCCCCccHHHHHHHHHHcCCEEecccCccceeEEEEcCCCCccH
Confidence            37899999999922 223349999999999999999999 999999998777653

>PRK10563 6-phosphogluconate phosphatase; Provisional

Probab=97.82  E-value=1.3e-05  Score=73.86  Aligned_cols=92  Identities=12%  Similarity=0.092  Sum_probs=69.8

Q ss_pred             EEEeCccHHHHHHHHhcCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccC------cccccccccCCCCCcE
Q 044162          152 LVKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQ------KERKYLDLVLGQENSI  225 (369)
Q Consensus       152 ~vklRPgl~eFL~~ls~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~------~~~KdL~~l~~~~~~v  225 (369)
                      ...+.||+.++|+.+.  +.+.|.|++++.+++.+++..+-.. +|...+++.++...      .+.+-++.++...+.+
T Consensus        86 ~~~~~~gv~~~L~~L~--~~~~ivTn~~~~~~~~~l~~~~l~~-~F~~~v~~~~~~~~~KP~p~~~~~a~~~~~~~p~~~  162 (221)
T PRK10563         86 ELEPIAGANALLESIT--VPMCVVSNGPVSKMQHSLGKTGMLH-YFPDKLFSGYDIQRWKPDPALMFHAAEAMNVNVENC  162 (221)
T ss_pred             cCCcCCCHHHHHHHcC--CCEEEEeCCcHHHHHHHHHhcChHH-hCcceEeeHHhcCCCCCChHHHHHHHHHcCCCHHHe
Confidence            4677899999999994  8999999999999999999887764 77555776655432      1344456677788899


Q ss_pred             EEEeCCccccccCCCceEEeC
Q 044162          226 VIVDDTESVWGGRVENLITVG  246 (369)
Q Consensus       226 vIvDD~~~~w~~~~~N~I~I~  246 (369)
                      |+|+|++.-.......|+++-
T Consensus       163 l~igDs~~di~aA~~aG~~~i  183 (221)
T PRK10563        163 ILVDDSSAGAQSGIAAGMEVF  183 (221)
T ss_pred             EEEeCcHhhHHHHHHCCCEEE
Confidence            999999877655455665553

>PRK13225 phosphoglycolate phosphatase; Provisional

Probab=97.81  E-value=2.1e-05  Score=75.69  Aligned_cols=91  Identities=11%  Similarity=0.066  Sum_probs=65.0

Q ss_pred             EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccC---cccccccccCCCCCcEEEE
Q 044162          153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQ---KERKYLDLVLGQENSIVIV  228 (369)
Q Consensus       153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~---~~~KdL~~l~~~~~~vvIv  228 (369)
                      +.+-||+.++|+.+. +.+.+.|.|++.+.++..+++.++-. .+|. .+++.++...   .+.+-++.++.+.+.+++|
T Consensus       141 ~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~gl~-~~F~-~vi~~~~~~~k~~~~~~~l~~~~~~p~~~l~I  218 (273)
T PRK13225        141 LQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQGLR-SLFS-VVQAGTPILSKRRALSQLVAREGWQPAAVMYV  218 (273)
T ss_pred             CCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCh-hheE-EEEecCCCCCCHHHHHHHHHHhCcChhHEEEE
Confidence            567899999999997 67899999999999999999999876 4785 4555444221   1222334456677899999


Q ss_pred             eCCccccccCCCceEEe
Q 044162          229 DDTESVWGGRVENLITV  245 (369)
Q Consensus       229 DD~~~~w~~~~~N~I~I  245 (369)
                      +|++.-.......++..
T Consensus       219 GDs~~Di~aA~~AG~~~  235 (273)
T PRK13225        219 GDETRDVEAARQVGLIA  235 (273)
T ss_pred             CCCHHHHHHHHHCCCeE
Confidence            99985443333445543

>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional

Probab=97.81  E-value=1.8e-05  Score=70.80  Aligned_cols=89  Identities=15%  Similarity=0.156  Sum_probs=66.6

Q ss_pred             EEeCccHHHHHHHHhcCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCcEE
Q 044162          153 VKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENSIV  226 (369)
Q Consensus       153 vklRPgl~eFL~~ls~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~vv  226 (369)
                      +.+-|++ +.|+.+.+.+.+.|-|++.+.+++.+++.++-.+ ||. .+++.++....      +..-+++++.+.+.+|
T Consensus        87 ~~~~~~~-e~L~~L~~~~~l~I~T~~~~~~~~~~l~~~~l~~-~fd-~i~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~l  163 (188)
T PRK10725         87 VEPLPLI-EVVKAWHGRRPMAVGTGSESAIAEALLAHLGLRR-YFD-AVVAADDVQHHKPAPDTFLRCAQLMGVQPTQCV  163 (188)
T ss_pred             CCCccHH-HHHHHHHhCCCEEEEcCCchHHHHHHHHhCCcHh-Hce-EEEehhhccCCCCChHHHHHHHHHcCCCHHHeE
Confidence            4456874 8999998779999999999999999999998764 785 68877775431      3344556677788999


Q ss_pred             EEeCCccccccCCCceEE
Q 044162          227 IVDDTESVWGGRVENLIT  244 (369)
Q Consensus       227 IvDD~~~~w~~~~~N~I~  244 (369)
                      +|+|++.-......+|++
T Consensus       164 ~igDs~~di~aA~~aG~~  181 (188)
T PRK10725        164 VFEDADFGIQAARAAGMD  181 (188)
T ss_pred             EEeccHhhHHHHHHCCCE
Confidence            999997666544444443

>PRK13226 phosphoglycolate phosphatase; Provisional

Probab=97.79  E-value=4.5e-05  Score=71.08  Aligned_cols=91  Identities=12%  Similarity=-0.046  Sum_probs=68.2

Q ss_pred             EEEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCc
Q 044162          152 LVKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENS  224 (369)
Q Consensus       152 ~vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~  224 (369)
                      .+.+.||+.++|+.+. +.+.+.|-|++...++..+++.++-.. +|. .+++.++....      +.+-++.++.+.+.
T Consensus        93 ~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~l~~-~f~-~i~~~~~~~~~KP~p~~~~~~~~~l~~~p~~  170 (229)
T PRK13226         93 QSQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQLGWEQ-RCA-VLIGGDTLAERKPHPLPLLVAAERIGVAPTD  170 (229)
T ss_pred             cCeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCchh-ccc-EEEecCcCCCCCCCHHHHHHHHHHhCCChhh
Confidence            4688999999999997 568999999999999999999887664 674 46665554321      34555667788899


Q ss_pred             EEEEeCCccccccCCCceEE
Q 044162          225 IVIVDDTESVWGGRVENLIT  244 (369)
Q Consensus       225 vvIvDD~~~~w~~~~~N~I~  244 (369)
                      +++|+|++.-.......|+.
T Consensus       171 ~l~IGDs~~Di~aA~~aG~~  190 (229)
T PRK13226        171 CVYVGDDERDILAARAAGMP  190 (229)
T ss_pred             EEEeCCCHHHHHHHHHCCCc
Confidence            99999998655433344443

>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain

Probab=97.78  E-value=3.7e-05  Score=56.41  Aligned_cols=48  Identities=21%  Similarity=0.176  Sum_probs=42.0

Q ss_pred             CceEEecccCCC-CChhHHHHHHhcCCEEEeccCCCceEEEecCCCccc
Q 044162          317 GCTILFGDDDFE-ELPLTWSRAEEMGAICTLVTDASVTHVVSSNTQSET  364 (369)
Q Consensus       317 g~~ivFSg~~p~-~~p~lw~la~~~GA~v~~~i~~~vTHvVa~~~gT~K  364 (369)
                      ||.++|+|..+. ....+.++++++||++..++++.+||+|+.+..+.+
T Consensus         1 ~~~~~i~g~~~~~~~~~l~~~i~~~Gg~v~~~~~~~~thvI~~~~~~~~   49 (72)
T cd00027           1 GLTFVITGDLPSEERDELKELIEKLGGKVTSSVSKKTTHVIVGSDAGPK   49 (72)
T ss_pred             CCEEEEEecCCCcCHHHHHHHHHHcCCEEeccccCCceEEEECCCCCch
Confidence            689999999853 345999999999999999999999999999887765

The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.

>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA

Probab=97.74  E-value=4.9e-05  Score=64.36  Aligned_cols=75  Identities=16%  Similarity=0.058  Sum_probs=53.9

Q ss_pred             EEeCccHHHHHHHHh-cCccEEEecCCc--------HHHHHHHHHHhCCCCCcccceEEeeccccC----ccccccccc-
Q 044162          153 VKLRPFVRSFLEEAS-RLFEISVCTLGN--------REYATRAVKLLDPDCKYFNSRIITREDFKQ----KERKYLDLV-  218 (369)
Q Consensus       153 vklRPgl~eFL~~ls-~~yEi~I~T~g~--------~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~----~~~KdL~~l-  218 (369)
                      ..+.||+.++|+.+. +.+.++|.|++.        ..++..+++.++-.  ++  .+++......    .+.+-++.+ 
T Consensus        24 ~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~--~~--~~~~~~~~~KP~~~~~~~~~~~~~   99 (132)
T TIGR01662        24 RILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVP--ID--VLYACPHCRKPKPGMFLEALKRFN   99 (132)
T ss_pred             heeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCC--EE--EEEECCCCCCCChHHHHHHHHHcC
Confidence            567899999999997 669999999999        88899999888764  12  1222221111    133445567 


Q ss_pred             CCCCCcEEEEeCC
Q 044162          219 LGQENSIVIVDDT  231 (369)
Q Consensus       219 ~~~~~~vvIvDD~  231 (369)
                      +.+.+.+++|+|+
T Consensus       100 ~~~~~~~v~IGD~  112 (132)
T TIGR01662       100 EIDPEESVYVGDQ  112 (132)
T ss_pred             CCChhheEEEcCC
Confidence            4788999999994

In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.

>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain

Probab=97.72  E-value=7.3e-05  Score=64.98  Aligned_cols=107  Identities=13%  Similarity=0.017  Sum_probs=67.5

Q ss_pred             EEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHHHHHHHh-cCccEE
Q 044162           95 HLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEAS-RLFEIS  173 (369)
Q Consensus        95 ~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~eFL~~ls-~~yEi~  173 (369)
                      +|++|+||||+......- ...                                 +.-+++.||+.++|+.+. +.|.++
T Consensus         2 ~~~~d~dgtl~~~~~~~~-~~~---------------------------------~~~~~~~~g~~~~l~~Lk~~g~~~~   47 (147)
T TIGR01656         2 ALFLDRDGVINEDTVSDY-PRS---------------------------------LDDWQLRPGAVPALLTLRAAGYTVV   47 (147)
T ss_pred             eEEEeCCCceeccCCccc-CCC---------------------------------HHHeEEcCChHHHHHHHHHCCCEEE
Confidence            689999999998775321 000                                 112467899999999996 789999


Q ss_pred             EecCCcH---------------HHHHHHHHHhCCCCC-cccceEEeeccccC------cccccccccCCCCCcEEEEeCC
Q 044162          174 VCTLGNR---------------EYATRAVKLLDPDCK-YFNSRIITREDFKQ------KERKYLDLVLGQENSIVIVDDT  231 (369)
Q Consensus       174 I~T~g~~---------------~YA~~i~~~lDp~~~-~f~~Ri~srd~~~~------~~~KdL~~l~~~~~~vvIvDD~  231 (369)
                      |.|++.+               .++..+++.++..-. +|...+.+.+....      .+.+-++.++.+.+.+++|+|+
T Consensus        48 I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~KP~~~~~~~~~~~~~~~~~e~i~IGDs  127 (147)
T TIGR01656        48 VVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLGVAVDGVLFCPHHPADNCSCRKPKPGLILEALKRLGVDASRSLVVGDR  127 (147)
T ss_pred             EEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCCCceeEEEECCCCCCCCCCCCCCCHHHHHHHHHHcCCChHHEEEEcCC
Confidence            9999874               567777777665410 11110100111111      1233345567788999999998


Q ss_pred             cccc
Q 044162          232 ESVW  235 (369)
Q Consensus       232 ~~~w  235 (369)
                      ..-.
T Consensus       128 ~~Di  131 (147)
T TIGR01656       128 LRDL  131 (147)
T ss_pred             HHHH
Confidence            6433

This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.

>TIGR01686 FkbH FkbH-like domain

Probab=97.71  E-value=5.4e-05  Score=74.38  Aligned_cols=110  Identities=19%  Similarity=0.170  Sum_probs=72.7

Q ss_pred             CceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHHHHHHHh-cCc
Q 044162           92 RKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEAS-RLF  170 (369)
Q Consensus        92 ~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~eFL~~ls-~~y  170 (369)
                      .+.+||+|||+||..-..-.                      +.+     ..+      -+....||+.++|+.+. +.+
T Consensus         2 ~~k~~v~DlDnTlw~gv~~e----------------------~g~-----~~i------~~~~~~~~~~e~L~~L~~~Gi   48 (320)
T TIGR01686         2 ALKVLVLDLDNTLWGGVLGE----------------------DGI-----DNL------NLSPLHKTLQEKIKTLKKQGF   48 (320)
T ss_pred             CeEEEEEcCCCCCCCCEEcc----------------------CCc-----ccc------ccCccHHHHHHHHHHHHhCCC
Confidence            46899999999999654211                      100     000      11234799999999997 779


Q ss_pred             cEEEecCCcHHHHHHHHHH----hCCCCCcccceEEeeccccCcccccccccCCCCCcEEEEeCCcccc
Q 044162          171 EISVCTLGNREYATRAVKL----LDPDCKYFNSRIITREDFKQKERKYLDLVLGQENSIVIVDDTESVW  235 (369)
Q Consensus       171 Ei~I~T~g~~~YA~~i~~~----lDp~~~~f~~Ri~srd~~~~~~~KdL~~l~~~~~~vvIvDD~~~~w  235 (369)
                      .+.|.|+..+..|..+++.    +... .+|..-..+.........+-++.++-+.+.+|+|||++.-.
T Consensus        49 ~lai~S~n~~~~a~~~l~~~~~~~~~~-~~f~~~~~~~~pk~~~i~~~~~~l~i~~~~~vfidD~~~d~  116 (320)
T TIGR01686        49 LLALASKNDEDDAKKVFERRKDFILQA-EDFDARSINWGPKSESLRKIAKKLNLGTDSFLFIDDNPAER  116 (320)
T ss_pred             EEEEEcCCCHHHHHHHHHhCccccCcH-HHeeEEEEecCchHHHHHHHHHHhCCCcCcEEEECCCHHHH
Confidence            9999999999999999987    5544 35643222211111112333455777889999999988443

The C-terminal portion of this domain is unique to this family (by BLAST).

>TIGR01261 hisB_Nterm histidinol-phosphatase

Probab=97.66  E-value=0.00012  Score=65.12  Aligned_cols=93  Identities=13%  Similarity=0.068  Sum_probs=62.4

Q ss_pred             EEeCccHHHHHHHHh-cCccEEEecCC---------------cHHHHHHHHHHhCCCCCcccceEEe----eccccCc--
Q 044162          153 VKLRPFVRSFLEEAS-RLFEISVCTLG---------------NREYATRAVKLLDPDCKYFNSRIIT----REDFKQK--  210 (369)
Q Consensus       153 vklRPgl~eFL~~ls-~~yEi~I~T~g---------------~~~YA~~i~~~lDp~~~~f~~Ri~s----rd~~~~~--  210 (369)
                      +++-||+.++|+.+. +.|.++|.|+.               ...++..+++.++..   |...+++    .+++...  
T Consensus        28 ~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~gl~---fd~ii~~~~~~~~~~~~~KP  104 (161)
T TIGR01261        28 LRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQGII---FDDVLICPHFPDDNCDCRKP  104 (161)
T ss_pred             eeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHCCCc---eeEEEECCCCCCCCCCCCCC
Confidence            677899999999998 57999999996               466888888888775   6444554    2443321  


Q ss_pred             ----ccccccccCCCCCcEEEEeCCccccccCCCceEEeCcc
Q 044162          211 ----ERKYLDLVLGQENSIVIVDDTESVWGGRVENLITVGSY  248 (369)
Q Consensus       211 ----~~KdL~~l~~~~~~vvIvDD~~~~w~~~~~N~I~I~~y  248 (369)
                          +..-++..+.+.+.+++|.|+..-......+++..--+
T Consensus       105 ~~~~~~~~~~~~~~~~~e~l~IGD~~~Di~~A~~aGi~~i~~  146 (161)
T TIGR01261       105 KIKLLEPYLKKNLIDKARSYVIGDRETDMQLAENLGIRGIQY  146 (161)
T ss_pred             CHHHHHHHHHHcCCCHHHeEEEeCCHHHHHHHHHCCCeEEEE
Confidence                12223345668889999999964333334555554433

This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.

>PRK13223 phosphoglycolate phosphatase; Provisional

Probab=97.66  E-value=5.4e-05  Score=72.66  Aligned_cols=90  Identities=17%  Similarity=0.140  Sum_probs=67.0

Q ss_pred             EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCcE
Q 044162          153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENSI  225 (369)
Q Consensus       153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~v  225 (369)
                      +.++||+.++|+.+. +.+.++|.|++...++..+++.++-. .+|. .+++.++....      +.+-++.++.+.+.+
T Consensus       100 ~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~~i~-~~f~-~i~~~d~~~~~Kp~p~~~~~~~~~~g~~~~~~  177 (272)
T PRK13223        100 TVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQMKIG-RYFR-WIIGGDTLPQKKPDPAALLFVMKMAGVPPSQS  177 (272)
T ss_pred             CccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHcCcH-hhCe-EEEecCCCCCCCCCcHHHHHHHHHhCCChhHE
Confidence            568999999999997 57999999999999999999988765 4774 57766654421      223344566788999


Q ss_pred             EEEeCCccccccCCCceEE
Q 044162          226 VIVDDTESVWGGRVENLIT  244 (369)
Q Consensus       226 vIvDD~~~~w~~~~~N~I~  244 (369)
                      ++|+|+..-......+++.
T Consensus       178 l~IGD~~~Di~aA~~aGi~  196 (272)
T PRK13223        178 LFVGDSRSDVLAAKAAGVQ  196 (272)
T ss_pred             EEECCCHHHHHHHHHCCCe
Confidence            9999998555443445543

>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672

Probab=97.59  E-value=0.00016  Score=68.37  Aligned_cols=136  Identities=15%  Similarity=0.064  Sum_probs=77.6

Q ss_pred             hhcCCceEEEEeCCCceeeeccC-----CCCCch-HHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHH
Q 044162           88 LLRMRKLHLVLDLDHTLLHSRLI-----GKLTSD-EKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRS  161 (369)
Q Consensus        88 ll~~~Kl~LVLDLD~TLIhs~~~-----~~~~~~-e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~e  161 (369)
                      |-.++++.++|||||||++|+..     +..+++ ..|++.+..             .+.+.  . ...-.....|++.+
T Consensus        58 ~~~~~p~aViFDlDgTLlDSs~~~~~G~~~~s~~~~~~l~g~~~-------------w~~~~--~-~~~~~s~p~~~a~e  121 (237)
T TIGR01672        58 LEGRPPIAVSFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQVF-------------WEKVN--N-GWDEFSIPKEVARQ  121 (237)
T ss_pred             cCCCCCeEEEEeCCCccccCcHHHhCCcccCCHHHhhhhcChHH-------------HHHHH--H-hcccCCcchhHHHH
Confidence            44555679999999999999862     111111 011111000             00000  0 00112344556999


Q ss_pred             HHHHHh-cCccEEEecCC----cHHHHHHHHHHhCCCCCcccceEEeeccccCc-ccccccccCCCCCcEEEEeCCcccc
Q 044162          162 FLEEAS-RLFEISVCTLG----NREYATRAVKLLDPDCKYFNSRIITREDFKQK-ERKYLDLVLGQENSIVIVDDTESVW  235 (369)
Q Consensus       162 FL~~ls-~~yEi~I~T~g----~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~-~~KdL~~l~~~~~~vvIvDD~~~~w  235 (369)
                      ||+++. +.+.++|.|+.    .+.+++.+++.++-.. +| .-+++.++.... .-|. ..+ ...+.+++|-|+..=.
T Consensus       122 lL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~lGi~~-~f-~~i~~~d~~~~~Kp~~~-~~l-~~~~i~i~vGDs~~DI  197 (237)
T TIGR01672       122 LIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNFHIPA-MN-PVIFAGDKPGQYQYTKT-QWI-QDKNIRIHYGDSDNDI  197 (237)
T ss_pred             HHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHhCCch-he-eEEECCCCCCCCCCCHH-HHH-HhCCCeEEEeCCHHHH
Confidence            999996 67999999998    6789999999888764 66 346655543221 1121 111 2344578899987555


Q ss_pred             ccCCCceE
Q 044162          236 GGRVENLI  243 (369)
Q Consensus       236 ~~~~~N~I  243 (369)
                      .....+++
T Consensus       198 ~aAk~AGi  205 (237)
T TIGR01672       198 TAAKEAGA  205 (237)
T ss_pred             HHHHHCCC
Confidence            43333443

Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=97.58  E-value=6.3e-05  Score=72.63  Aligned_cols=122  Identities=17%  Similarity=0.145  Sum_probs=85.3

Q ss_pred             CCceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHHHHHHHh-cC
Q 044162           91 MRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEAS-RL  169 (369)
Q Consensus        91 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~eFL~~ls-~~  169 (369)
                      .++..+++|+|+||.........    .|.    .                        ..-..+.||+.++|+++. ..
T Consensus       156 ~~~~~~~~D~dgtl~~~~~~~~~----~~~----~------------------------~~~~~~~~~~~~~l~~l~~~g  203 (300)
T PHA02530        156 GLPKAVIFDIDGTLAKMGGRSPY----DWT----K------------------------VKEDKPNPMVVELVKMYKAAG  203 (300)
T ss_pred             CCCCEEEEECCCcCcCCCCCCcc----chh----h------------------------cccCCCChhHHHHHHHHHhCC
Confidence            45678999999999976542110    000    0                        112456899999999997 56


Q ss_pred             ccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeecc-------ccCc------ccccccccCC-CCCcEEEEeCCcccc
Q 044162          170 FEISVCTLGNREYATRAVKLLDPDCKYFNSRIITRED-------FKQK------ERKYLDLVLG-QENSIVIVDDTESVW  235 (369)
Q Consensus       170 yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~-------~~~~------~~KdL~~l~~-~~~~vvIvDD~~~~w  235 (369)
                      +.++|.|+....+++.+++.|+..+.+|. .++..+.       ....      ..+.|..++. +.+.+++|||++...
T Consensus       204 ~~i~i~T~r~~~~~~~~l~~l~~~~~~f~-~i~~~~~~~~~~~~~~~~kp~p~~~~~~l~~~~~~~~~~~~~vgD~~~d~  282 (300)
T PHA02530        204 YEIIVVSGRDGVCEEDTVEWLRQTDIWFD-DLIGRPPDMHFQREQGDKRPDDVVKEEIFWEKIAPKYDVLLAVDDRDQVV  282 (300)
T ss_pred             CEEEEEeCCChhhHHHHHHHHHHcCCchh-hhhCCcchhhhcccCCCCCCcHHHHHHHHHHHhccCceEEEEEcCcHHHH
Confidence            99999999999999999999999876774 4555552       1111      2233444555 568999999999777


Q ss_pred             ccCCCceEEe
Q 044162          236 GGRVENLITV  245 (369)
Q Consensus       236 ~~~~~N~I~I  245 (369)
                      .....+||++
T Consensus       283 ~~a~~~Gi~~  292 (300)
T PHA02530        283 DMWRRIGLEC  292 (300)
T ss_pred             HHHHHhCCeE
Confidence            6555666654

>TIGR00338 serB phosphoserine phosphatase SerB

Probab=97.49  E-value=9.2e-05  Score=67.92  Aligned_cols=92  Identities=13%  Similarity=0.076  Sum_probs=62.9

Q ss_pred             EEeCccHHHHHHHHhc-CccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeecc----------ccC-----ccccccc
Q 044162          153 VKLRPFVRSFLEEASR-LFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITRED----------FKQ-----KERKYLD  216 (369)
Q Consensus       153 vklRPgl~eFL~~ls~-~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~----------~~~-----~~~KdL~  216 (369)
                      ++++||+.+||+.+.+ .+.++|.|+|...++..+++.++-.. +|.+.+.+-+.          +..     .+.+-++
T Consensus        84 ~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~  162 (219)
T TIGR00338        84 LPLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLDA-AFANRLEVEDGKLTGLVEGPIVDASYKGKTLLILLR  162 (219)
T ss_pred             CCcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCc-eEeeEEEEECCEEEEEecCcccCCcccHHHHHHHHH
Confidence            5689999999999985 79999999999999999999987664 67654432110          000     0112233


Q ss_pred             ccCCCCCcEEEEeCCccccccCCCceEEe
Q 044162          217 LVLGQENSIVIVDDTESVWGGRVENLITV  245 (369)
Q Consensus       217 ~l~~~~~~vvIvDD~~~~w~~~~~N~I~I  245 (369)
                      +++.+.+.+++|+|+..-.......++.|
T Consensus       163 ~~~~~~~~~i~iGDs~~Di~aa~~ag~~i  191 (219)
T TIGR00338       163 KEGISPENTVAVGDGANDLSMIKAAGLGI  191 (219)
T ss_pred             HcCCCHHHEEEEECCHHHHHHHHhCCCeE
Confidence            45567789999999875443333344544

Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.

>COG4996 Predicted phosphatase [General function prediction only]

Probab=97.46  E-value=0.0005  Score=58.84  Aligned_cols=133  Identities=23%  Similarity=0.294  Sum_probs=85.7

Q ss_pred             EEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHHHHHHHh-cCccEE
Q 044162           95 HLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEAS-RLFEIS  173 (369)
Q Consensus        95 ~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~eFL~~ls-~~yEi~  173 (369)
                      .+|||+|+||-.....+++.+.             |..      -+-..++ +..+.-+.++|++.+||+++. ..|-+.
T Consensus         2 ~i~~d~d~t~wdhh~iSsl~pP-------------f~r------Vs~n~i~-Ds~G~ev~L~~~v~~~l~warnsG~i~~   61 (164)
T COG4996           2 AIVFDADKTLWDHHNISSLEPP-------------FRR------VSSNTIE-DSKGREVHLFPDVKETLKWARNSGYILG   61 (164)
T ss_pred             cEEEeCCCcccccccchhcCCc-------------cee------cCcccee-cCCCeEEEEcHHHHHHHHHHHhCCcEEE
Confidence            4799999999976555443221             110      0001111 123667999999999999997 788899


Q ss_pred             EecCCcHHHHHHHHHHhCCCCCcccceEEeeccccC-ccccccccc------CCCCCcEEEEeCCcc----ccccCCCce
Q 044162          174 VCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQ-KERKYLDLV------LGQENSIVIVDDTES----VWGGRVENL  242 (369)
Q Consensus       174 I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~-~~~KdL~~l------~~~~~~vvIvDD~~~----~w~~~~~N~  242 (369)
                      .+|=.-..-|-++++.+|-. .||..-++-..--.. +..+=|..+      .-.++.+|.+|||..    .|. .-.|+
T Consensus        62 ~~sWN~~~kA~~aLral~~~-~yFhy~ViePhP~K~~ML~~llr~i~~er~~~ikP~~Ivy~DDR~iH~~~Iwe-~~G~V  139 (164)
T COG4996          62 LASWNFEDKAIKALRALDLL-QYFHYIVIEPHPYKFLMLSQLLREINTERNQKIKPSEIVYLDDRRIHFGNIWE-YLGNV  139 (164)
T ss_pred             EeecCchHHHHHHHHHhchh-hhEEEEEecCCChhHHHHHHHHHHHHHhhccccCcceEEEEecccccHHHHHH-hcCCe
Confidence            99999999999999999999 489654542211111 011112222      235789999999984    444 35666


Q ss_pred             EEeCccc
Q 044162          243 ITVGSYD  249 (369)
Q Consensus       243 I~I~~y~  249 (369)
                      =-++.|.
T Consensus       140 ~~~~~~~  146 (164)
T COG4996         140 KCLEMWK  146 (164)
T ss_pred             eeeEeec
Confidence            6666553

>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase

Probab=97.44  E-value=0.0004  Score=61.96  Aligned_cols=74  Identities=12%  Similarity=-0.002  Sum_probs=50.0

Q ss_pred             eCccHHHHHHHHh-cCccEEEecCCcHH------------HHHHHHHHhCCCCCcccceEEeeccccCc------ccccc
Q 044162          155 LRPFVRSFLEEAS-RLFEISVCTLGNRE------------YATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYL  215 (369)
Q Consensus       155 lRPgl~eFL~~ls-~~yEi~I~T~g~~~------------YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL  215 (369)
                      +-||+.+.|+.+. +.|.+.|.|++...            ++..+++.++..   + .-+++.++....      ...-+
T Consensus        43 ~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~gl~---~-~~ii~~~~~~~~KP~p~~~~~~~  118 (166)
T TIGR01664        43 LYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKLKVP---I-QVLAATHAGLYRKPMTGMWEYLQ  118 (166)
T ss_pred             ecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHcCCC---E-EEEEecCCCCCCCCccHHHHHHH
Confidence            5699999999996 78999999998763            566677777653   2 224433332111      11223


Q ss_pred             cccC--CCCCcEEEEeCCc
Q 044162          216 DLVL--GQENSIVIVDDTE  232 (369)
Q Consensus       216 ~~l~--~~~~~vvIvDD~~  232 (369)
                      +.++  .+.+.+++|.|++
T Consensus       119 ~~~~~~~~~~~~v~VGD~~  137 (166)
T TIGR01664       119 SQYNSPIKMTRSFYVGDAA  137 (166)
T ss_pred             HHcCCCCCchhcEEEECCC
Confidence            4455  6788999999996

The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.

>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]

Probab=97.43  E-value=0.00018  Score=67.05  Aligned_cols=84  Identities=19%  Similarity=0.156  Sum_probs=69.1

Q ss_pred             EEEeCccHHHHHHHHhcC-ccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccC------cccccccccCCCCCc
Q 044162          152 LVKLRPFVRSFLEEASRL-FEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQ------KERKYLDLVLGQENS  224 (369)
Q Consensus       152 ~vklRPgl~eFL~~ls~~-yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~------~~~KdL~~l~~~~~~  224 (369)
                      -++..||+.+||+.+... .-+.+-|++.+.-+..+++.++-.. +|...+. .++...      .|.+-.++|+.+++.
T Consensus        84 ~~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl~~-~f~~~v~-~~dv~~~KP~Pd~yL~Aa~~Lgv~P~~  161 (221)
T COG0637          84 GLKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARLGLLD-YFDVIVT-ADDVARGKPAPDIYLLAAERLGVDPEE  161 (221)
T ss_pred             CCCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHccChh-hcchhcc-HHHHhcCCCCCHHHHHHHHHcCCChHH
Confidence            368999999999999866 9999999999999999999999874 7876554 555432      267778889999999


Q ss_pred             EEEEeCCcccccc
Q 044162          225 IVIVDDTESVWGG  237 (369)
Q Consensus       225 vvIvDD~~~~w~~  237 (369)
                      +|+|+|++.--..
T Consensus       162 CvviEDs~~Gi~A  174 (221)
T COG0637         162 CVVVEDSPAGIQA  174 (221)
T ss_pred             eEEEecchhHHHH
Confidence            9999999865543

>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase

Probab=97.40  E-value=0.00073  Score=60.38  Aligned_cols=87  Identities=13%  Similarity=-0.006  Sum_probs=54.9

Q ss_pred             EEeCccHHHHHHHHh-cCccEEEecCCcH---------------HHHHHHHHHhCCCCCcccceEEee-----------c
Q 044162          153 VKLRPFVRSFLEEAS-RLFEISVCTLGNR---------------EYATRAVKLLDPDCKYFNSRIITR-----------E  205 (369)
Q Consensus       153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~---------------~YA~~i~~~lDp~~~~f~~Ri~sr-----------d  205 (369)
                      +++-||+.++|+++. +.|.++|.|++..               .|...++..+...   |. .++..           +
T Consensus        25 ~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~-~i~~~~~~~~~~~~~~~  100 (176)
T TIGR00213        25 FEFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSLAERDVD---LD-GIYYCPHHPEGVEEFRQ  100 (176)
T ss_pred             eEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCC---cc-EEEECCCCCcccccccC
Confidence            556799999999997 6799999999985               3444555443322   22 22211           1


Q ss_pred             cccC------cccccccccCCCCCcEEEEeCCccccccCCCceE
Q 044162          206 DFKQ------KERKYLDLVLGQENSIVIVDDTESVWGGRVENLI  243 (369)
Q Consensus       206 ~~~~------~~~KdL~~l~~~~~~vvIvDD~~~~w~~~~~N~I  243 (369)
                      ++..      .+.+-+++++-+.+.+++|+|+..-......+++
T Consensus       101 ~~~~~KP~p~~~~~a~~~~~~~~~~~v~VGDs~~Di~aA~~aG~  144 (176)
T TIGR00213       101 VCDCRKPKPGMLLQARKELHIDMAQSYMVGDKLEDMQAGVAAKV  144 (176)
T ss_pred             CCCCCCCCHHHHHHHHHHcCcChhhEEEEcCCHHHHHHHHHCCC
Confidence            2211      1344456677789999999999754433334454

This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).

>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated

Probab=97.37  E-value=0.0011  Score=59.34  Aligned_cols=79  Identities=9%  Similarity=-0.095  Sum_probs=51.4

Q ss_pred             EEeCccHHHHHHHHhc-CccEEEecCCcH---------------HHHHHHHHHhCCCCCcccceEEeec-----cccC--
Q 044162          153 VKLRPFVRSFLEEASR-LFEISVCTLGNR---------------EYATRAVKLLDPDCKYFNSRIITRE-----DFKQ--  209 (369)
Q Consensus       153 vklRPgl~eFL~~ls~-~yEi~I~T~g~~---------------~YA~~i~~~lDp~~~~f~~Ri~srd-----~~~~--  209 (369)
                      +.+.||+.++|+++.+ .|.+.|.|+++.               .+...+++.++   .+|.. ++...     +...  
T Consensus        28 ~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g---~~f~~-i~~~~~~~~~~~~~~K  103 (181)
T PRK08942         28 WIPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSLADRG---GRLDG-IYYCPHHPEDGCDCRK  103 (181)
T ss_pred             eEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcC---Cccce-EEECCCCCCCCCcCCC
Confidence            4578999999999985 699999999873               33344444443   23533 43222     1111  


Q ss_pred             ----cccccccccCCCCCcEEEEeCCcccc
Q 044162          210 ----KERKYLDLVLGQENSIVIVDDTESVW  235 (369)
Q Consensus       210 ----~~~KdL~~l~~~~~~vvIvDD~~~~w  235 (369)
                          .+.+-++.++.+.+.+++|+|++.-.
T Consensus       104 P~p~~~~~~~~~l~~~~~~~~~VgDs~~Di  133 (181)
T PRK08942        104 PKPGMLLSIAERLNIDLAGSPMVGDSLRDL  133 (181)
T ss_pred             CCHHHHHHHHHHcCCChhhEEEEeCCHHHH
Confidence                13455566777889999999997433

>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed

Probab=97.36  E-value=0.0007  Score=62.54  Aligned_cols=91  Identities=9%  Similarity=0.034  Sum_probs=57.8

Q ss_pred             EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEE-eecc----------------ccCccccc
Q 044162          153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRII-TRED----------------FKQKERKY  214 (369)
Q Consensus       153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~-srd~----------------~~~~~~Kd  214 (369)
                      +.++||+.+||+.+. +.+.++|.|++.+.|++.+++.+-+...++.+... +.+.                |+....+-
T Consensus        73 ~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~~~i~~n~~~~~~~~~~~~kp~p~~~~~~~~~~~~K~~~  152 (219)
T PRK09552         73 AEIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGLIPKEQIYCNGSDFSGEYITITWPHPCDEHCQNHCGCCKPSL  152 (219)
T ss_pred             CCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHhCCcCcEEEeEEEecCCeeEEeccCCccccccccCCCchHHH
Confidence            689999999999997 67999999999999999999876222223332211 1111                11111223


Q ss_pred             ccccCCCCCcEEEEeCCccccccCCCceE
Q 044162          215 LDLVLGQENSIVIVDDTESVWGGRVENLI  243 (369)
Q Consensus       215 L~~l~~~~~~vvIvDD~~~~w~~~~~N~I  243 (369)
                      ++.+......+++|.|+..-.......++
T Consensus       153 l~~~~~~~~~~i~iGDs~~Di~aa~~Ag~  181 (219)
T PRK09552        153 IRKLSDTNDFHIVIGDSITDLEAAKQADK  181 (219)
T ss_pred             HHHhccCCCCEEEEeCCHHHHHHHHHCCc
Confidence            34455566789999998754433233344

>PLN02940 riboflavin kinase

Probab=97.35  E-value=0.00021  Score=71.99  Aligned_cols=91  Identities=7%  Similarity=0.037  Sum_probs=67.1

Q ss_pred             EEEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHH-HhCCCCCcccceEEeeccccCc------ccccccccCCCCC
Q 044162          152 LVKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVK-LLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQEN  223 (369)
Q Consensus       152 ~vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~-~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~  223 (369)
                      .+.+.||+.++|+.+. +.+.+.|-|++.+.++..+++ ..+-. .+|. .+++.++....      +..-++.++-..+
T Consensus        91 ~~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~-~~Fd-~ii~~d~v~~~KP~p~~~~~a~~~lgv~p~  168 (382)
T PLN02940         91 NIKALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWK-ESFS-VIVGGDEVEKGKPSPDIFLEAAKRLNVEPS  168 (382)
T ss_pred             cCCCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChH-hhCC-EEEehhhcCCCCCCHHHHHHHHHHcCCChh
Confidence            3567899999999996 669999999999999998886 55544 4784 57777775431      3444566777889


Q ss_pred             cEEEEeCCccccccCCCceEE
Q 044162          224 SIVIVDDTESVWGGRVENLIT  244 (369)
Q Consensus       224 ~vvIvDD~~~~w~~~~~N~I~  244 (369)
                      .+|+|+|+..-.......|+.
T Consensus       169 ~~l~VGDs~~Di~aA~~aGi~  189 (382)
T PLN02940        169 NCLVIEDSLPGVMAGKAAGME  189 (382)
T ss_pred             HEEEEeCCHHHHHHHHHcCCE
Confidence            999999998555433344443

>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins

Probab=97.27  E-value=0.0018  Score=62.31  Aligned_cols=79  Identities=27%  Similarity=0.299  Sum_probs=60.9

Q ss_pred             hhhhcCCceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHHHHHH
Q 044162           86 KNLLRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEE  165 (369)
Q Consensus        86 ~~ll~~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~eFL~~  165 (369)
                      ..+.-..+-++|+|||.|||.......+                                         .-|.+.+-|.+
T Consensus       115 ~~~~~~~phVIVfDlD~TLItd~~~v~I-----------------------------------------r~~~v~~sL~~  153 (297)
T PF05152_consen  115 ESLVWEPPHVIVFDLDSTLITDEGDVRI-----------------------------------------RDPAVYDSLRE  153 (297)
T ss_pred             hhccCCCCcEEEEECCCcccccCCcccc-----------------------------------------CChHHHHHHHH
Confidence            3445577789999999999976542110                                         12788899999


Q ss_pred             HhcCc-cEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccc
Q 044162          166 ASRLF-EISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDF  207 (369)
Q Consensus       166 ls~~y-Ei~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~  207 (369)
                      +.+.+ -+++|+.|+++|+..-++.++.. .+| +-|++++..
T Consensus       154 Lk~~g~vLvLWSyG~~eHV~~sl~~~~L~-~~F-d~ii~~G~~  194 (297)
T PF05152_consen  154 LKEQGCVLVLWSYGNREHVRHSLKELKLE-GYF-DIIICGGNK  194 (297)
T ss_pred             HHHcCCEEEEecCCCHHHHHHHHHHhCCc-ccc-EEEEeCCcc
Confidence            98665 89999999999999999999988 478 457766543

>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase

Probab=97.23  E-value=0.00098  Score=59.09  Aligned_cols=49  Identities=14%  Similarity=0.216  Sum_probs=41.2

Q ss_pred             EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEe
Q 044162          153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIIT  203 (369)
Q Consensus       153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~s  203 (369)
                      +.++||+.++|+.+. ..+.++|.|++...+++.+++.++-. .+|. .+++
T Consensus        71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~-~~f~-~i~~  120 (188)
T TIGR01489        71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGIGEK-DVFI-EIYS  120 (188)
T ss_pred             CCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHcCCh-hhee-EEec
Confidence            689999999999997 56999999999999999999988765 3563 3554

Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.

>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A

Probab=97.17  E-value=0.00088  Score=57.80  Aligned_cols=83  Identities=27%  Similarity=0.369  Sum_probs=67.9

Q ss_pred             EEEEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCC
Q 044162          151 LLVKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQEN  223 (369)
Q Consensus       151 ~~vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~  223 (369)
                      ...++.||+.++|+.++ +.+.++|.|++.+.++..+++.+... .+|. .+++.++.+..      +.+-++.++.+++
T Consensus        74 ~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~-~~f~-~i~~~~~~~~~Kp~~~~~~~~~~~~~~~p~  151 (176)
T PF13419_consen   74 SKLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERLGLD-DYFD-EIISSDDVGSRKPDPDAYRRALEKLGIPPE  151 (176)
T ss_dssp             GGEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHG-GGCS-EEEEGGGSSSSTTSHHHHHHHHHHHTSSGG
T ss_pred             hccchhhhhhhhhhhcccccceeEEeecCCcccccccccccccc-cccc-cccccchhhhhhhHHHHHHHHHHHcCCCcc
Confidence            46889999999999998 99999999999999999999999877 5785 57777766531      3444556677889


Q ss_pred             cEEEEeCCcccc
Q 044162          224 SIVIVDDTESVW  235 (369)
Q Consensus       224 ~vvIvDD~~~~w  235 (369)
                      .+++|||++.-.
T Consensus       152 ~~~~vgD~~~d~  163 (176)
T PF13419_consen  152 EILFVGDSPSDV  163 (176)
T ss_dssp             GEEEEESSHHHH
T ss_pred             eEEEEeCCHHHH
Confidence            999999998544

...

>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family

Probab=97.17  E-value=0.0025  Score=61.25  Aligned_cols=122  Identities=17%  Similarity=0.100  Sum_probs=68.1

Q ss_pred             cCCceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHHHHHHHh-c
Q 044162           90 RMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEAS-R  168 (369)
Q Consensus        90 ~~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~eFL~~ls-~  168 (369)
                      +.+++.+|||+|||+++.+..         ...+...-..|..++      .-+...   .--...-||+.+||+.+. +
T Consensus        72 ~~kp~AVV~DIDeTvLdns~y---------~~~~~~~~~~~~~~~------w~~wv~---~~~a~~ipGA~e~L~~L~~~  133 (266)
T TIGR01533        72 KDKKYAIVLDLDETVLDNSPY---------QGYQVLNNKPFDPET------WDKWVQ---AAQAKPVAGALDFLNYANSK  133 (266)
T ss_pred             CCCCCEEEEeCccccccChHH---------HHHHhcCCCcCCHHH------HHHHHH---cCCCCcCccHHHHHHHHHHC
Confidence            578899999999999987632         111111001111100      000000   112445799999999995 6


Q ss_pred             CccEEEecCCcHHHHHHHHHHh---CCCCCcccceEEeeccccCcccccccc--cCCCCCcEEEEeCCcc
Q 044162          169 LFEISVCTLGNREYATRAVKLL---DPDCKYFNSRIITREDFKQKERKYLDL--VLGQENSIVIVDDTES  233 (369)
Q Consensus       169 ~yEi~I~T~g~~~YA~~i~~~l---Dp~~~~f~~Ri~srd~~~~~~~KdL~~--l~~~~~~vvIvDD~~~  233 (369)
                      ...++|.|+....+.+...+.|   +-.. ++.+.++.|++..   -|...+  +-..-.-++.|.|+..
T Consensus       134 G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~-~~~d~lllr~~~~---~K~~rr~~I~~~y~Ivl~vGD~~~  199 (266)
T TIGR01533       134 GVKIFYVSNRSEKEKAATLKNLKRFGFPQ-ADEEHLLLKKDKS---SKESRRQKVQKDYEIVLLFGDNLL  199 (266)
T ss_pred             CCeEEEEeCCCcchHHHHHHHHHHcCcCC-CCcceEEeCCCCC---CcHHHHHHHHhcCCEEEEECCCHH
Confidence            7899999998866666544444   4332 2334577675422   243322  2233344777777754

which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.

>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668

Probab=97.12  E-value=0.0012  Score=58.83  Aligned_cols=107  Identities=18%  Similarity=0.117  Sum_probs=70.6

Q ss_pred             hhhhhhhhcCCceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHH
Q 044162           82 KRNTKNLLRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRS  161 (369)
Q Consensus        82 ~~~~~~ll~~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~e  161 (369)
                      ......+...+-..+|+|+|+||.....                                           ..+-||+.+
T Consensus        14 ~i~~~~~~~~~v~~vv~D~Dgtl~~~~~-------------------------------------------~~~~pgv~e   50 (170)
T TIGR01668        14 DLTIDLLKKVGIKGVVLDKDNTLVYPDH-------------------------------------------NEAYPALRD   50 (170)
T ss_pred             hCCHHHHHHCCCCEEEEecCCccccCCC-------------------------------------------CCcChhHHH
Confidence            3344444556667899999999985421                                           123489999


Q ss_pred             HHHHHhc-CccEEEecCCc-HHHHHHHHHHhCCCCCcccceEEeeccccCcccccccccCCCCCcEEEEeCCc--cccc
Q 044162          162 FLEEASR-LFEISVCTLGN-REYATRAVKLLDPDCKYFNSRIITREDFKQKERKYLDLVLGQENSIVIVDDTE--SVWG  236 (369)
Q Consensus       162 FL~~ls~-~yEi~I~T~g~-~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~~~KdL~~l~~~~~~vvIvDD~~--~~w~  236 (369)
                      +|+.+.+ .+.++|.|++. ...+..+++.++... ++..    .......+.+-++.++.+.+.+++|+|+.  ++-.
T Consensus        51 ~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~gl~~-~~~~----~KP~p~~~~~~l~~~~~~~~~~l~IGDs~~~Di~a  124 (170)
T TIGR01668        51 WIEELKAAGRKLLIVSNNAGEQRAKAVEKALGIPV-LPHA----VKPPGCAFRRAHPEMGLTSEQVAVVGDRLFTDVMG  124 (170)
T ss_pred             HHHHHHHcCCEEEEEeCCchHHHHHHHHHHcCCEE-EcCC----CCCChHHHHHHHHHcCCCHHHEEEECCcchHHHHH
Confidence            9999974 59999999999 788888877765431 1110    00001113344555667789999999996  4554

This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.

>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea

Probab=97.11  E-value=0.0013  Score=59.14  Aligned_cols=122  Identities=21%  Similarity=0.225  Sum_probs=65.4

Q ss_pred             eEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHHHHHHHh-cCccE
Q 044162           94 LHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEAS-RLFEI  172 (369)
Q Consensus        94 l~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~eFL~~ls-~~yEi  172 (369)
                      ..+|+|||.||-....+..+.+             +|....   .. .  .-.+....-+++-|++.+.|+++. ....|
T Consensus         4 klvvFDLD~TlW~~~~~~~~~~-------------Pf~~~~---~~-~--~v~D~~g~~v~lypdv~~iL~~L~~~gv~l   64 (169)
T PF12689_consen    4 KLVVFDLDYTLWPPWMDTHVGP-------------PFKKIS---NG-N--VVVDSRGEEVSLYPDVPEILQELKERGVKL   64 (169)
T ss_dssp             SEEEE-STTTSSSS-TTTSS-S--------------EEE-T---TS-----EEETT--EE---TTHHHHHHHHHHCT--E
T ss_pred             cEEEEcCcCCCCchhHhhccCC-------------CceecC---CC-C--EEEeCCCCEEEeCcCHHHHHHHHHHCCCEE
Confidence            4679999999987665443211             111111   00 0  011223667899999999999998 68999


Q ss_pred             EEec-CCcHHHHHHHHHHhCCC---------CCcccceEEeeccccCccccccc-ccCCCCCcEEEEeCCcccc
Q 044162          173 SVCT-LGNREYATRAVKLLDPD---------CKYFNSRIITREDFKQKERKYLD-LVLGQENSIVIVDDTESVW  235 (369)
Q Consensus       173 ~I~T-~g~~~YA~~i~~~lDp~---------~~~f~~Ri~srd~~~~~~~KdL~-~l~~~~~~vvIvDD~~~~w  235 (369)
                      .+-| +.....|.++++.|+-.         ..+|.+--+.+. +...+.+.|. ..+-+.+.++.+||....-
T Consensus        65 avASRt~~P~~A~~~L~~l~i~~~~~~~~~~~~~F~~~eI~~g-sK~~Hf~~i~~~tgI~y~eMlFFDDe~~N~  137 (169)
T PF12689_consen   65 AVASRTDEPDWARELLKLLEIDDADGDGVPLIEYFDYLEIYPG-SKTTHFRRIHRKTGIPYEEMLFFDDESRNI  137 (169)
T ss_dssp             EEEE--S-HHHHHHHHHHTT-C----------CCECEEEESSS--HHHHHHHHHHHH---GGGEEEEES-HHHH
T ss_pred             EEEECCCChHHHHHHHHhcCCCccccccccchhhcchhheecC-chHHHHHHHHHhcCCChhHEEEecCchhcc
Confidence            9999 56789999999998876         135544333232 2222344444 3466888899999987543

The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.

>PRK13582 thrH phosphoserine phosphatase; Provisional

Probab=97.09  E-value=0.0013  Score=59.66  Aligned_cols=82  Identities=16%  Similarity=0.177  Sum_probs=55.8

Q ss_pred             EEEeCccHHHHHHHHhcCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeec-------cccCcccc--cccccCCCC
Q 044162          152 LVKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITRE-------DFKQKERK--YLDLVLGQE  222 (369)
Q Consensus       152 ~vklRPgl~eFL~~ls~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd-------~~~~~~~K--dL~~l~~~~  222 (369)
                      .+.+.||+.+||+.+.+.+.++|.|++.+.+++.+++.++-. .+|.+.+...+       +......|  -+..+....
T Consensus        66 ~~~~~pg~~e~L~~L~~~~~~~IvS~~~~~~~~~~l~~~gl~-~~f~~~~~~~~~~~i~~~~~~~p~~k~~~l~~~~~~~  144 (205)
T PRK13582         66 TLDPLPGAVEFLDWLRERFQVVILSDTFYEFAGPLMRQLGWP-TLFCHSLEVDEDGMITGYDLRQPDGKRQAVKALKSLG  144 (205)
T ss_pred             hCCCCCCHHHHHHHHHhcCCEEEEeCCcHHHHHHHHHHcCCc-hhhcceEEECCCCeEECccccccchHHHHHHHHHHhC
Confidence            356789999999999866999999999999999999998865 36655433211       11111111  122233344


Q ss_pred             CcEEEEeCCccc
Q 044162          223 NSIVIVDDTESV  234 (369)
Q Consensus       223 ~~vvIvDD~~~~  234 (369)
                      ..+++|.|+..=
T Consensus       145 ~~~v~iGDs~~D  156 (205)
T PRK13582        145 YRVIAAGDSYND  156 (205)
T ss_pred             CeEEEEeCCHHH
Confidence            689999998743

>PRK08238 hypothetical protein; Validated

Probab=97.08  E-value=0.0007  Score=70.28  Aligned_cols=88  Identities=15%  Similarity=0.219  Sum_probs=59.0

Q ss_pred             EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc--ccccccccC--CCCCcEEE
Q 044162          153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK--ERKYLDLVL--GQENSIVI  227 (369)
Q Consensus       153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~--~~KdL~~l~--~~~~~vvI  227 (369)
                      ...+|++.++|+++. +.+.++|-|++.+.+++++++.++-    | +.+++.++....  ..|- ..+.  -+.+.++.
T Consensus        71 lp~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~lGl----F-d~Vigsd~~~~~kg~~K~-~~l~~~l~~~~~~y  144 (479)
T PRK08238         71 LPYNEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHLGL----F-DGVFASDGTTNLKGAAKA-AALVEAFGERGFDY  144 (479)
T ss_pred             CCCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCC----C-CEEEeCCCccccCCchHH-HHHHHHhCccCeeE
Confidence            357899999999996 7899999999999999999998853    5 356655543221  1121 1111  12344677


Q ss_pred             EeCCc---cccccCCCceEEeCc
Q 044162          228 VDDTE---SVWGGRVENLITVGS  247 (369)
Q Consensus       228 vDD~~---~~w~~~~~N~I~I~~  247 (369)
                      +.|+.   .+|.. -+|.+.|.|
T Consensus       145 vGDS~~Dlp~~~~-A~~av~Vn~  166 (479)
T PRK08238        145 AGNSAADLPVWAA-ARRAIVVGA  166 (479)
T ss_pred             ecCCHHHHHHHHh-CCCeEEECC
Confidence            78877   55553 467776654

>KOG3226 consensus DNA repair protein [Replication, recombination and repair]

Probab=97.01  E-value=0.0007  Score=66.67  Aligned_cols=57  Identities=19%  Similarity=0.219  Sum_probs=52.4

Q ss_pred             HhhhcCceEEecccCCCCChhHHHHHHhcCCEEEeccCCCceEEEecCCCccccccc
Q 044162          312 SRILMGCTILFGDDDFEELPLTWSRAEEMGAICTLVTDASVTHVVSSNTQSETFEWA  368 (369)
Q Consensus       312 ~~VL~g~~ivFSg~~p~~~p~lw~la~~~GA~v~~~i~~~vTHvVa~~~gT~K~~~a  368 (369)
                      .++|+|+.+|+||+.--.+..|+--|-.|||+...|-+.+.||+||+=.+|-|++|-
T Consensus       315 ~klL~GVV~VlSGfqNP~Rs~LRskAl~LGAkY~pDW~~gsThLICAF~NTPKy~QV  371 (508)
T KOG3226|consen  315 SKLLEGVVFVLSGFQNPERSTLRSKALTLGAKYQPDWNAGSTHLICAFPNTPKYRQV  371 (508)
T ss_pred             HHhhhceEEEEecccCchHHHHHHHHHhhcccccCCcCCCceeEEEecCCCcchhhc
Confidence            678999999999987556678999999999999999999999999999999999874

>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253

Probab=96.90  E-value=0.0014  Score=60.02  Aligned_cols=79  Identities=20%  Similarity=0.180  Sum_probs=64.5

Q ss_pred             EEEeCccHHHHHHHHhc-CccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccC------cccccccccCCCCCc
Q 044162          152 LVKLRPFVRSFLEEASR-LFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQ------KERKYLDLVLGQENS  224 (369)
Q Consensus       152 ~vklRPgl~eFL~~ls~-~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~------~~~KdL~~l~~~~~~  224 (369)
                      ++.+.||+.+||+.+.+ .+.+.|.|++.+.++...++.++-. .+|. .+++.++.+.      .+.+-++.++-+.+.
T Consensus        92 ~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~-~~f~-~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~  169 (221)
T TIGR02253        92 YLRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERLGVR-DFFD-AVITSEEEGVEKPHPKIFYAALKRLGVKPEE  169 (221)
T ss_pred             hCCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCChH-Hhcc-EEEEeccCCCCCCCHHHHHHHHHHcCCChhh
Confidence            57899999999999985 5999999999999999999999876 4785 5776666543      134556677878899


Q ss_pred             EEEEeCCc
Q 044162          225 IVIVDDTE  232 (369)
Q Consensus       225 vvIvDD~~  232 (369)
                      +|+|+|++
T Consensus       170 ~~~igDs~  177 (221)
T TIGR02253       170 AVMVGDRL  177 (221)
T ss_pred             EEEECCCh
Confidence            99999997

This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).

>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]

Probab=96.89  E-value=0.0046  Score=55.10  Aligned_cols=127  Identities=21%  Similarity=0.223  Sum_probs=92.4

Q ss_pred             HHHHHHhhhhhhhhhcCCceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEE
Q 044162           75 DEISRLKKRNTKNLLRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVK  154 (369)
Q Consensus        75 ~~a~~~~~~~~~~ll~~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vk  154 (369)
                      +..+.+...+...|...+...+++|||+|||-=.. +.                                          
T Consensus        10 ~~v~tv~~i~~~~L~~~Gikgvi~DlDNTLv~wd~-~~------------------------------------------   46 (175)
T COG2179          10 KLVETVFDITPDILKAHGIKGVILDLDNTLVPWDN-PD------------------------------------------   46 (175)
T ss_pred             HHHhhHhhCCHHHHHHcCCcEEEEeccCceecccC-CC------------------------------------------
Confidence            34456677788889999999999999999994321 11                                          


Q ss_pred             eCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCcccccccccCCCCCcEEEEeCCc-
Q 044162          155 LRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKYLDLVLGQENSIVIVDDTE-  232 (369)
Q Consensus       155 lRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~~~KdL~~l~~~~~~vvIvDD~~-  232 (369)
                      .=|-+++-+.++. +.-.++|.++.++.=+..++..||-+.  + +|  ..--.....-|-|..++-+.+.|++|-|.- 
T Consensus        47 ~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~f--i-~~--A~KP~~~~fr~Al~~m~l~~~~vvmVGDqL~  121 (175)
T COG2179          47 ATPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVPF--I-YR--AKKPFGRAFRRALKEMNLPPEEVVMVGDQLF  121 (175)
T ss_pred             CCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhcCCce--e-ec--ccCccHHHHHHHHHHcCCChhHEEEEcchhh
Confidence            1267778888887 558999999999999999999999773  1 11  111111224566777888999999999975 


Q ss_pred             -cccccCCCc--eEEeCccc
Q 044162          233 -SVWGGRVEN--LITVGSYD  249 (369)
Q Consensus       233 -~~w~~~~~N--~I~I~~y~  249 (369)
                       |+...+...  .|.|+|-.
T Consensus       122 TDVlggnr~G~~tIlV~Pl~  141 (175)
T COG2179         122 TDVLGGNRAGMRTILVEPLV  141 (175)
T ss_pred             hhhhcccccCcEEEEEEEec
Confidence             777665443  58888874

>PRK06769 hypothetical protein; Validated

Probab=96.68  E-value=0.0061  Score=54.53  Aligned_cols=90  Identities=12%  Similarity=-0.018  Sum_probs=52.4

Q ss_pred             EEeCccHHHHHHHHh-cCccEEEecCCcHHH-----HHHHHHHhCCCCCcccceEEeeccc----cC------ccccccc
Q 044162          153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREY-----ATRAVKLLDPDCKYFNSRIITREDF----KQ------KERKYLD  216 (369)
Q Consensus       153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~Y-----A~~i~~~lDp~~~~f~~Ri~srd~~----~~------~~~KdL~  216 (369)
                      +.+-||+.++|+++. +.|.+.|.|++....     .......+...|  |.+.+++-..+    ..      .+.+-++
T Consensus        27 ~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~g--~~~~~~~~~~~~~~~~~~KP~p~~~~~~~~  104 (173)
T PRK06769         27 FTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQELKGFG--FDDIYLCPHKHGDGCECRKPSTGMLLQAAE  104 (173)
T ss_pred             eEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHhCC--cCEEEECcCCCCCCCCCCCCCHHHHHHHHH
Confidence            456799999999997 579999999987421     011222232222  22223322211    11      1345566


Q ss_pred             ccCCCCCcEEEEeCCccccccCCCceEE
Q 044162          217 LVLGQENSIVIVDDTESVWGGRVENLIT  244 (369)
Q Consensus       217 ~l~~~~~~vvIvDD~~~~w~~~~~N~I~  244 (369)
                      +++.+.+.+++|+|++.-.......++.
T Consensus       105 ~l~~~p~~~i~IGD~~~Di~aA~~aGi~  132 (173)
T PRK06769        105 KHGLDLTQCAVIGDRWTDIVAAAKVNAT  132 (173)
T ss_pred             HcCCCHHHeEEEcCCHHHHHHHHHCCCe
Confidence            6777889999999997433322334443

>PLN02770 haloacid dehalogenase-like hydrolase family protein

Probab=96.67  E-value=0.0018  Score=61.15  Aligned_cols=93  Identities=17%  Similarity=0.144  Sum_probs=72.0

Q ss_pred             EEEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCc
Q 044162          152 LVKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENS  224 (369)
Q Consensus       152 ~vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~  224 (369)
                      .+.+.||+.++|+.+. +.+.+.|-|++.+.+++.+++.++-. .||. .+++.++....      +.+-+++++.+.+.
T Consensus       106 ~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~-~~Fd-~iv~~~~~~~~KP~p~~~~~a~~~~~~~~~~  183 (248)
T PLN02770        106 QLKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLGLS-DFFQ-AVIIGSECEHAKPHPDPYLKALEVLKVSKDH  183 (248)
T ss_pred             cCCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCCh-hhCc-EEEecCcCCCCCCChHHHHHHHHHhCCChhH
Confidence            4678899999999995 67999999999999999999999877 4785 57767765431      45556777888899


Q ss_pred             EEEEeCCccccccCCCceEEeC
Q 044162          225 IVIVDDTESVWGGRVENLITVG  246 (369)
Q Consensus       225 vvIvDD~~~~w~~~~~N~I~I~  246 (369)
                      +++|+|++.-......+++.+-
T Consensus       184 ~l~vgDs~~Di~aA~~aGi~~i  205 (248)
T PLN02770        184 TFVFEDSVSGIKAGVAAGMPVV  205 (248)
T ss_pred             EEEEcCCHHHHHHHHHCCCEEE
Confidence            9999999855443345565543

>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic

Probab=96.65  E-value=0.0018  Score=58.78  Aligned_cols=95  Identities=16%  Similarity=0.091  Sum_probs=72.0

Q ss_pred             EEEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCc
Q 044162          152 LVKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENS  224 (369)
Q Consensus       152 ~vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~  224 (369)
                      .+.+.||+.++|+.+. +.+.++|.|++.+.++..+++.++-.+ +|. .+++.++....      +.+-++.++.+.+.
T Consensus        83 ~~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f~-~~~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~  160 (213)
T TIGR01449        83 LTSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELLGLAK-YFS-VLIGGDSLAQRKPHPDPLLLAAERLGVAPQQ  160 (213)
T ss_pred             cCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcHh-hCc-EEEecCCCCCCCCChHHHHHHHHHcCCChhH
Confidence            4688999999999997 669999999999999999999988764 674 57766654321      34445667778889


Q ss_pred             EEEEeCCccccccCCCceEEeCcc
Q 044162          225 IVIVDDTESVWGGRVENLITVGSY  248 (369)
Q Consensus       225 vvIvDD~~~~w~~~~~N~I~I~~y  248 (369)
                      +++|+|++.-.......++++-..
T Consensus       161 ~~~igDs~~d~~aa~~aG~~~i~v  184 (213)
T TIGR01449       161 MVYVGDSRVDIQAARAAGCPSVLL  184 (213)
T ss_pred             eEEeCCCHHHHHHHHHCCCeEEEE
Confidence            999999986665444556655443

This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).

>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254

Probab=96.64  E-value=0.0038  Score=56.99  Aligned_cols=91  Identities=16%  Similarity=0.168  Sum_probs=68.6

Q ss_pred             EEEeCccHHHHHHHHhcCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------cccccccc-CCCCCc
Q 044162          152 LVKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLV-LGQENS  224 (369)
Q Consensus       152 ~vklRPgl~eFL~~ls~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l-~~~~~~  224 (369)
                      .++++||+.++|+.+.+.+.++|-|++.+.++..+++.++-.+ +|. .+++.++....      +.+-++++ +..++.
T Consensus        95 ~~~~~~g~~~~L~~l~~~~~~~i~Sn~~~~~~~~~l~~~~l~~-~fd-~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~  172 (224)
T TIGR02254        95 GHQLLPGAFELMENLQQKFRLYIVTNGVRETQYKRLRKSGLFP-FFD-DIFVSEDAGIQKPDKEIFNYALERMPKFSKEE  172 (224)
T ss_pred             cCeeCccHHHHHHHHHhcCcEEEEeCCchHHHHHHHHHCCcHh-hcC-EEEEcCccCCCCCCHHHHHHHHHHhcCCCchh
Confidence            3689999999999998669999999999999999999987764 784 57766665431      34556677 778889


Q ss_pred             EEEEeCCc-cccccCCCceEE
Q 044162          225 IVIVDDTE-SVWGGRVENLIT  244 (369)
Q Consensus       225 vvIvDD~~-~~w~~~~~N~I~  244 (369)
                      +|+|+|++ .-......++++
T Consensus       173 ~v~igD~~~~di~~A~~~G~~  193 (224)
T TIGR02254       173 VLMIGDSLTADIKGGQNAGLD  193 (224)
T ss_pred             eEEECCCcHHHHHHHHHCCCc
Confidence            99999986 233222344543

This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.

>COG0546 Gph Predicted phosphatases [General function prediction only]

Probab=96.61  E-value=0.0068  Score=56.13  Aligned_cols=89  Identities=16%  Similarity=0.131  Sum_probs=63.8

Q ss_pred             EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCcE
Q 044162          153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENSI  225 (369)
Q Consensus       153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~v  225 (369)
                      ..+-||+.+.|+.++ +.|.+.|.|+..+..++.+++.++-.. +|.- +++-++....      ...-+..++.+.+.+
T Consensus        88 ~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~~-~F~~-i~g~~~~~~~KP~P~~l~~~~~~~~~~~~~~  165 (220)
T COG0546          88 SRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKALGLAD-YFDV-IVGGDDVPPPKPDPEPLLLLLEKLGLDPEEA  165 (220)
T ss_pred             CccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCcc-ccce-EEcCCCCCCCCcCHHHHHHHHHHhCCChhhe
Confidence            578899999999997 788999999999999999999999884 7853 5542322221      122334455565689


Q ss_pred             EEEeCCccccccCCCceE
Q 044162          226 VIVDDTESVWGGRVENLI  243 (369)
Q Consensus       226 vIvDD~~~~w~~~~~N~I  243 (369)
                      ++|=|+..=....+..++
T Consensus       166 l~VGDs~~Di~aA~~Ag~  183 (220)
T COG0546         166 LMVGDSLNDILAAKAAGV  183 (220)
T ss_pred             EEECCCHHHHHHHHHcCC
Confidence            999998855543334443

>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional

Probab=96.58  E-value=0.01  Score=59.44  Aligned_cols=105  Identities=14%  Similarity=0.148  Sum_probs=66.8

Q ss_pred             CceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHHHHHHHh-cCc
Q 044162           92 RKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEAS-RLF  170 (369)
Q Consensus        92 ~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~eFL~~ls-~~y  170 (369)
                      +|.+|+||-|+||+......       |..            +              ....+.+.||+.++|+++. +.|
T Consensus         1 ~~k~l~lDrDgtl~~~~~~~-------y~~------------~--------------~~~~~~l~pGV~e~L~~Lk~~G~   47 (354)
T PRK05446          1 MQKILFIDRDGTLIEEPPTD-------FQV------------D--------------SLDKLAFEPGVIPALLKLQKAGY   47 (354)
T ss_pred             CCcEEEEeCCCCccCCCCcc-------ccc------------c--------------CcccceECcCHHHHHHHHHhCCC
Confidence            47889999999999865311       110            0              0234788999999999997 569


Q ss_pred             cEEEecCC---------------cHHHHHHHHHHhCCCCCcccceEEee----ccccCcc------cccccccCCCCCcE
Q 044162          171 EISVCTLG---------------NREYATRAVKLLDPDCKYFNSRIITR----EDFKQKE------RKYLDLVLGQENSI  225 (369)
Q Consensus       171 Ei~I~T~g---------------~~~YA~~i~~~lDp~~~~f~~Ri~sr----d~~~~~~------~KdL~~l~~~~~~v  225 (369)
                      .++|.|+.               .+.++..+++.++-   +|..-+++.    +++....      ..-+..++-+.+.+
T Consensus        48 kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~~~gl---~fd~i~i~~~~~sd~~~~rKP~p~~l~~a~~~l~v~~~~s  124 (354)
T PRK05446         48 KLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFESQGI---KFDEVLICPHFPEDNCSCRKPKTGLVEEYLAEGAIDLANS  124 (354)
T ss_pred             eEEEEECCccccCccccHHHHhhHHHHHHHHHHHcCC---ceeeEEEeCCcCcccCCCCCCCHHHHHHHHHHcCCCcccE
Confidence            99999994               24455555555543   353323432    3333211      11122345678999


Q ss_pred             EEEeCCc
Q 044162          226 VIVDDTE  232 (369)
Q Consensus       226 vIvDD~~  232 (369)
                      ++|-|+.
T Consensus       125 vmIGDs~  131 (354)
T PRK05446        125 YVIGDRE  131 (354)
T ss_pred             EEEcCCH
Confidence            9999986

>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase

Probab=96.57  E-value=0.0016  Score=58.16  Aligned_cols=87  Identities=20%  Similarity=0.162  Sum_probs=64.8

Q ss_pred             EEeCccHHHHHHHHhcCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccC----------cccccccccCCCC
Q 044162          153 VKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQ----------KERKYLDLVLGQE  222 (369)
Q Consensus       153 vklRPgl~eFL~~ls~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~----------~~~KdL~~l~~~~  222 (369)
                      ++..||+.++|+++.  +.++|.|++.+.++..+++.++-. .+|. .+++.++...          .+.+-++.++.++
T Consensus        83 ~~~~~g~~~~L~~L~--~~~~i~Tn~~~~~~~~~l~~~gl~-~~fd-~i~~~~~~~~~~~~~KP~p~~~~~~~~~~~~~~  158 (184)
T TIGR01993        83 LKPDPELRNLLLRLP--GRKIIFTNGDRAHARRALNRLGIE-DCFD-GIFCFDTANPDYLLPKPSPQAYEKALREAGVDP  158 (184)
T ss_pred             CCCCHHHHHHHHhCC--CCEEEEeCCCHHHHHHHHHHcCcH-hhhC-eEEEeecccCccCCCCCCHHHHHHHHHHhCCCc
Confidence            567899999999997  689999999999999999998865 4785 4776665432          1234455677888


Q ss_pred             CcEEEEeCCccccccCCCceE
Q 044162          223 NSIVIVDDTESVWGGRVENLI  243 (369)
Q Consensus       223 ~~vvIvDD~~~~w~~~~~N~I  243 (369)
                      +.+++|+|++.-.......|+
T Consensus       159 ~~~l~vgD~~~di~aA~~~G~  179 (184)
T TIGR01993       159 ERAIFFDDSARNIAAAKALGM  179 (184)
T ss_pred             cceEEEeCCHHHHHHHHHcCC
Confidence            999999999744333334444

These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).

>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II

Probab=96.57  E-value=0.0019  Score=58.26  Aligned_cols=89  Identities=13%  Similarity=0.150  Sum_probs=66.6

Q ss_pred             EEeCccHHHHHHHHhc-CccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCcE
Q 044162          153 VKLRPFVRSFLEEASR-LFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENSI  225 (369)
Q Consensus       153 vklRPgl~eFL~~ls~-~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~v  225 (369)
                      +.+.||+.++|+.+.+ .|.++|.|++...++..+++.++-. .+|. .+++.++....      +.+-++.++.+++.+
T Consensus        91 ~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~-~~fd-~i~~s~~~~~~KP~~~~~~~~~~~~~~~p~~~  168 (198)
T TIGR01428        91 LPPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGLD-DPFD-AVLSADAVRAYKPAPQVYQLALEALGVPPDEV  168 (198)
T ss_pred             CCCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCCh-hhhh-eeEehhhcCCCCCCHHHHHHHHHHhCCChhhE
Confidence            5678999999999986 5999999999999999999988755 4784 57766665431      334455677788999


Q ss_pred             EEEeCCccccccCCCceE
Q 044162          226 VIVDDTESVWGGRVENLI  243 (369)
Q Consensus       226 vIvDD~~~~w~~~~~N~I  243 (369)
                      ++|+|++.-.......|+
T Consensus       169 ~~vgD~~~Di~~A~~~G~  186 (198)
T TIGR01428       169 LFVASNPWDLGGAKKFGF  186 (198)
T ss_pred             EEEeCCHHHHHHHHHCCC
Confidence            999999844433333443

Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.

>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein

Probab=96.55  E-value=0.0025  Score=57.87  Aligned_cols=92  Identities=17%  Similarity=0.125  Sum_probs=70.0

Q ss_pred             EEEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCc
Q 044162          152 LVKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENS  224 (369)
Q Consensus       152 ~vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~  224 (369)
                      .+.+.||+.++|+.+. +.+.++|.|++.+.++..+++.++-.+ +|. .+++.++....      +.+-++.++.+.+.
T Consensus        73 ~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~l~~-~f~-~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~  150 (205)
T TIGR01454        73 EVEVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEALGLLP-LFD-HVIGSDEVPRPKPAPDIVREALRLLDVPPED  150 (205)
T ss_pred             ccccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHcCChh-hee-eEEecCcCCCCCCChHHHHHHHHHcCCChhh
Confidence            4678999999999996 679999999999999999999988874 775 57766665321      23334556777899


Q ss_pred             EEEEeCCccccccCCCceEEe
Q 044162          225 IVIVDDTESVWGGRVENLITV  245 (369)
Q Consensus       225 vvIvDD~~~~w~~~~~N~I~I  245 (369)
                      +++|+|++.-......+|+++
T Consensus       151 ~l~igD~~~Di~aA~~~Gi~~  171 (205)
T TIGR01454       151 AVMVGDAVTDLASARAAGTAT  171 (205)
T ss_pred             eEEEcCCHHHHHHHHHcCCeE
Confidence            999999985554445566654

The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.

>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional

Probab=96.55  E-value=0.0073  Score=57.14  Aligned_cols=82  Identities=10%  Similarity=0.003  Sum_probs=52.2

Q ss_pred             EEEEeCccHHHHHHHH-hcCccEEEecC----CcHHHHHHHHHHhCC-CCCcccceEEeeccccCcccccccccCCCCCc
Q 044162          151 LLVKLRPFVRSFLEEA-SRLFEISVCTL----GNREYATRAVKLLDP-DCKYFNSRIITREDFKQKERKYLDLVLGQENS  224 (369)
Q Consensus       151 ~~vklRPgl~eFL~~l-s~~yEi~I~T~----g~~~YA~~i~~~lDp-~~~~f~~Ri~srd~~~~~~~KdL~~l~~~~~~  224 (369)
                      .+....||+.+||+.+ .+.++|++-|+    ....+++.+++.++- ...+|. -+++.+.. ...-|. ..+ .....
T Consensus       111 ~~a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~gip~~~~f~-vil~gd~~-~K~~K~-~~l-~~~~i  186 (237)
T PRK11009        111 EFSIPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADDFHIPADNMNP-VIFAGDKP-GQYTKT-QWL-KKKNI  186 (237)
T ss_pred             ccCcchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHcCCCccccee-EEEcCCCC-CCCCHH-HHH-HhcCC
Confidence            3466777899999999 68899999999    457789999986665 234663 45544432 111111 111 13344


Q ss_pred             EEEEeCCccccc
Q 044162          225 IVIVDDTESVWG  236 (369)
Q Consensus       225 vvIvDD~~~~w~  236 (369)
                      +|+|-|+..=..
T Consensus       187 ~I~IGDs~~Di~  198 (237)
T PRK11009        187 RIFYGDSDNDIT  198 (237)
T ss_pred             eEEEcCCHHHHH
Confidence            788888864443

>PLN02954 phosphoserine phosphatase

Probab=96.53  E-value=0.0062  Score=55.94  Aligned_cols=49  Identities=16%  Similarity=0.255  Sum_probs=40.6

Q ss_pred             EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCC-CcccceE
Q 044162          153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDC-KYFNSRI  201 (369)
Q Consensus       153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~-~~f~~Ri  201 (369)
                      ..++||+.++|+.+. +.+.++|-|++.+.+++.+++.++-.. .+|.+++
T Consensus        83 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~~~~~~~~~~  133 (224)
T PLN02954         83 PRLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIPPENIFANQI  133 (224)
T ss_pred             CCCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCChhhEEEeEE
Confidence            568899999999996 568999999999999999999987542 3665443

>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED

Probab=96.50  E-value=0.0054  Score=53.96  Aligned_cols=80  Identities=21%  Similarity=0.151  Sum_probs=59.0

Q ss_pred             EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCcE
Q 044162          153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENSI  225 (369)
Q Consensus       153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~v  225 (369)
                      +.+.||+.+||+.+. ..+.++|.|++...+ ..+...++... +|.. +++.++....      +.+-++.++.+.+.+
T Consensus        84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~~~l~~-~f~~-i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~  160 (183)
T TIGR01509        84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQELGLRD-LFDV-VIFSGDVGRGKPDPDIYLLALKKLGLKPEEC  160 (183)
T ss_pred             CccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHhcCCHH-HCCE-EEEcCCCCCCCCCHHHHHHHHHHcCCCcceE
Confidence            688999999999997 579999999999999 66666577664 6754 5544444321      233445567788999


Q ss_pred             EEEeCCcccc
Q 044162          226 VIVDDTESVW  235 (369)
Q Consensus       226 vIvDD~~~~w  235 (369)
                      ++|||++.-.
T Consensus       161 ~~vgD~~~di  170 (183)
T TIGR01509       161 LFVDDSPAGI  170 (183)
T ss_pred             EEEcCCHHHH
Confidence            9999998543

HAD subfamilies caused by an overly broad single model.

>PRK06063 DNA polymerase III subunit epsilon; Provisional

Probab=96.48  E-value=0.0027  Score=62.42  Aligned_cols=57  Identities=12%  Similarity=0.060  Sum_probs=48.7

Q ss_pred             hhhcCceEEecccCCCCChhHHHHHHhcCCEEEeccCCCceEEEecCCCc--ccccccC
Q 044162          313 RILMGCTILFGDDDFEELPLTWSRAEEMGAICTLVTDASVTHVVSSNTQS--ETFEWAE  369 (369)
Q Consensus       313 ~VL~g~~ivFSg~~p~~~p~lw~la~~~GA~v~~~i~~~vTHvVa~~~gT--~K~~~a~  369 (369)
                      ..+.|-+|||+|-+...+..++++++.+||++.+.++.+|+.|||..+..  .|.+.|+
T Consensus       231 ~l~~g~~~v~TG~l~~~R~e~~~~~~~~G~~v~~sVs~~t~~lv~g~~~~~ssK~~kA~  289 (313)
T PRK06063        231 PLVQGMRVALSAEVSRTHEELVERILHAGLAYSDSVDRDTSLVVCNDPAPEQGKGYHAR  289 (313)
T ss_pred             cccCCCEEEEecCCCCCHHHHHHHHHHcCCEecCccccCccEEEECCCCCcccHHHHHH
Confidence            35799999999988754559999999999999999999999999987544  7887763

>PRK09449 dUMP phosphatase; Provisional

Probab=96.44  E-value=0.0055  Score=56.29  Aligned_cols=78  Identities=14%  Similarity=0.144  Sum_probs=62.2

Q ss_pred             EEeCccHHHHHHHHhcCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCC-CCCcE
Q 044162          153 VKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLG-QENSI  225 (369)
Q Consensus       153 vklRPgl~eFL~~ls~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~-~~~~v  225 (369)
                      +.+.||+.++|+.+.+.|.+.|.|++.+.++..+++.++..+ +|. .+++.++....      +.+-++.++. +.+.+
T Consensus        94 ~~~~~g~~~~L~~L~~~~~~~i~Tn~~~~~~~~~l~~~~l~~-~fd-~v~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~  171 (224)
T PRK09449         94 CTPLPGAVELLNALRGKVKMGIITNGFTELQQVRLERTGLRD-YFD-LLVISEQVGVAKPDVAIFDYALEQMGNPDRSRV  171 (224)
T ss_pred             CccCccHHHHHHHHHhCCeEEEEeCCcHHHHHHHHHhCChHH-HcC-EEEEECccCCCCCCHHHHHHHHHHcCCCCcccE
Confidence            568999999999999889999999999999999999888764 784 57766665431      3445566664 45789


Q ss_pred             EEEeCCc
Q 044162          226 VIVDDTE  232 (369)
Q Consensus       226 vIvDD~~  232 (369)
                      ++|+|++
T Consensus       172 ~~vgD~~  178 (224)
T PRK09449        172 LMVGDNL  178 (224)
T ss_pred             EEEcCCc
Confidence            9999996

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=96.43  E-value=0.0079  Score=63.11  Aligned_cols=107  Identities=17%  Similarity=0.074  Sum_probs=70.0

Q ss_pred             cCCceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHHHHHHHh-c
Q 044162           90 RMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEAS-R  168 (369)
Q Consensus        90 ~~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~eFL~~ls-~  168 (369)
                      ..+..++.||+||||+.+.+........                                .=|..+-||+.+.|+++. .
T Consensus       165 ~~~~Kia~fD~DGTLi~t~sg~~~~~~~--------------------------------~d~~~l~pgV~e~L~~L~~~  212 (526)
T TIGR01663       165 KGQEKIAGFDLDGTIIKTKSGKVFPKGP--------------------------------DDWQIIFPEIPEKLKELEAD  212 (526)
T ss_pred             CccCcEEEEECCCCccccCCCccCCCCH--------------------------------HHeeecccCHHHHHHHHHHC
Confidence            4567899999999999765321111000                                001224599999999997 6


Q ss_pred             CccEEEecCCcH------------HHHHHHHHHhCCCCCcccceEEeeccccCc---------cccccc-ccCCCCCcEE
Q 044162          169 LFEISVCTLGNR------------EYATRAVKLLDPDCKYFNSRIITREDFKQK---------ERKYLD-LVLGQENSIV  226 (369)
Q Consensus       169 ~yEi~I~T~g~~------------~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~---------~~KdL~-~l~~~~~~vv  226 (369)
                      .|.|+|+|+...            .++..+++.++-.   |. -+++.+++..+         ..+++. .++.+.+..+
T Consensus       213 Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~~lgip---fd-viia~~~~~~RKP~pGm~~~a~~~~~~~~~Id~~~S~  288 (526)
T TIGR01663       213 GFKICIFTNQGGIARGKINADDFKAKIEAIVAKLGVP---FQ-VFIAIGAGFYRKPLTGMWDHLKEEANDGTEIQEDDCF  288 (526)
T ss_pred             CCEEEEEECCcccccCcccHHHHHHHHHHHHHHcCCc---eE-EEEeCCCCCCCCCCHHHHHHHHHhcCcccCCCHHHeE
Confidence            799999999776            5688888887643   53 45555554332         112221 1235788999


Q ss_pred             EEeCCc
Q 044162          227 IVDDTE  232 (369)
Q Consensus       227 IvDD~~  232 (369)
                      +|-|+.
T Consensus       289 ~VGDaa  294 (526)
T TIGR01663       289 FVGDAA  294 (526)
T ss_pred             EeCCcc
Confidence            999987

Note that the EC number for the kinase function is: 2.7.1.78

>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase

Probab=96.36  E-value=0.004  Score=58.63  Aligned_cols=92  Identities=16%  Similarity=-0.050  Sum_probs=69.8

Q ss_pred             EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccC------cccccccccCC-CCCc
Q 044162          153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQ------KERKYLDLVLG-QENS  224 (369)
Q Consensus       153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~------~~~KdL~~l~~-~~~~  224 (369)
                      +++.||+.++|+.+. +.+.+.|-|++++.+++.+++.++-.+ +|.+.+++.++...      .+.+-+++++. +.+.
T Consensus        98 ~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~gl~~-~f~d~ii~~~~~~~~KP~p~~~~~a~~~l~~~~~~~  176 (253)
T TIGR01422        98 SSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEAALQG-YRPDYNVTTDDVPAGRPAPWMALKNAIELGVYDVAA  176 (253)
T ss_pred             CccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHHHhcC-CCCceEEccccCCCCCCCHHHHHHHHHHcCCCCchh
Confidence            678899999999996 579999999999999999999988775 55456887776532      13455566776 4789


Q ss_pred             EEEEeCCccccccCCCceEEe
Q 044162          225 IVIVDDTESVWGGRVENLITV  245 (369)
Q Consensus       225 vvIvDD~~~~w~~~~~N~I~I  245 (369)
                      +|+|.|++.-.......|+..
T Consensus       177 ~l~IGDs~~Di~aA~~aGi~~  197 (253)
T TIGR01422       177 CVKVGDTVPDIEEGRNAGMWT  197 (253)
T ss_pred             eEEECCcHHHHHHHHHCCCeE
Confidence            999999985554444455543

This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.

>PRK06195 DNA polymerase III subunit epsilon; Validated

Probab=96.34  E-value=0.0034  Score=61.53  Aligned_cols=56  Identities=11%  Similarity=0.055  Sum_probs=48.0

Q ss_pred             hhhcCceEEecccCCC-CChhHHHHHHhcCCEEEeccCCCceEEEecC---------CCccccccc
Q 044162          313 RILMGCTILFGDDDFE-ELPLTWSRAEEMGAICTLVTDASVTHVVSSN---------TQSETFEWA  368 (369)
Q Consensus       313 ~VL~g~~ivFSg~~p~-~~p~lw~la~~~GA~v~~~i~~~vTHvVa~~---------~gT~K~~~a  368 (369)
                      ..|.|-++||+|.+.. .+..++.+++.+||+|.+.++.+||.||+..         ..+.|.+.|
T Consensus       219 ~~l~g~~~vfTG~l~~~~R~~~~~~~~~~Gg~v~~sVs~~t~~lV~G~~~~~~~~~~~~~~K~~kA  284 (309)
T PRK06195        219 TAFKEEVVVFTGGLASMTRDEAMILVRRLGGTVGSSVTKKTTYLVTNTKDIEDLNREEMSNKLKKA  284 (309)
T ss_pred             ccccCCEEEEccccCCCCHHHHHHHHHHhCCEecCCcccCceEEEECCCcchhhcccCcChHHHHH
Confidence            4699999999999864 4569999999999999999999999999984         345677776

>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]

Probab=96.26  E-value=0.0043  Score=57.59  Aligned_cols=82  Identities=21%  Similarity=0.169  Sum_probs=60.4

Q ss_pred             EEeCccHHHHHHHHhcCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccC------------cccccccccCC
Q 044162          153 VKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQ------------KERKYLDLVLG  220 (369)
Q Consensus       153 vklRPgl~eFL~~ls~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~------------~~~KdL~~l~~  220 (369)
                      +|.-|=|++||-.|.+.+ .++||+|.+..|..+++.|+-.. .|.. |++-+-...            .+.|-....+-
T Consensus        99 LkPD~~LRnlLL~l~~r~-k~~FTNa~k~HA~r~Lk~LGieD-cFeg-ii~~e~~np~~~~~vcKP~~~afE~a~k~agi  175 (244)
T KOG3109|consen   99 LKPDPVLRNLLLSLKKRR-KWIFTNAYKVHAIRILKKLGIED-CFEG-IICFETLNPIEKTVVCKPSEEAFEKAMKVAGI  175 (244)
T ss_pred             cCCCHHHHHHHHhCcccc-EEEecCCcHHHHHHHHHHhChHH-hccc-eeEeeccCCCCCceeecCCHHHHHHHHHHhCC
Confidence            777788999999998777 99999999999999999999885 6743 443332210            12233333454


Q ss_pred             -CCCcEEEEeCCcccccc
Q 044162          221 -QENSIVIVDDTESVWGG  237 (369)
Q Consensus       221 -~~~~vvIvDD~~~~w~~  237 (369)
                       ++.+++.+||+......
T Consensus       176 ~~p~~t~FfDDS~~NI~~  193 (244)
T KOG3109|consen  176 DSPRNTYFFDDSERNIQT  193 (244)
T ss_pred             CCcCceEEEcCchhhHHH
Confidence             48999999999876644

>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional

Probab=96.18  E-value=0.0078  Score=64.87  Aligned_cols=56  Identities=11%  Similarity=0.099  Sum_probs=49.2

Q ss_pred             hhcCceEEecccCCC-CChhHHHHHHhcCCEEEeccCCCceEEEecCCCcccccccC
Q 044162          314 ILMGCTILFGDDDFE-ELPLTWSRAEEMGAICTLVTDASVTHVVSSNTQSETFEWAE  369 (369)
Q Consensus       314 VL~g~~ivFSg~~p~-~~p~lw~la~~~GA~v~~~i~~~vTHvVa~~~gT~K~~~a~  369 (369)
                      .|.|.++||+|-++. .++.+-++++++||+++..++.+|+.|||......|...|+
T Consensus       593 ~l~gktfV~TG~l~~~~R~e~~~lie~~Ggkv~ssVSkktd~LV~G~~aGsKl~KA~  649 (669)
T PRK14350        593 FLFGKKFCITGSFNGYSRSVLIDKLTKKGAIFNTCVTKYLDFLLVGEKAGLKLKKAN  649 (669)
T ss_pred             ccCCcEEEEecccCCCCHHHHHHHHHHcCCEEeccccCCCcEEEECCCCCchHHHHH
Confidence            388999999998876 46699999999999999999999999999977678887763

>PRK14988 GMP/IMP nucleotidase; Provisional

Probab=96.13  E-value=0.004  Score=57.94  Aligned_cols=90  Identities=13%  Similarity=0.080  Sum_probs=69.2

Q ss_pred             EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCcE
Q 044162          153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENSI  225 (369)
Q Consensus       153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~v  225 (369)
                      +.+.||+.++|+.+. +.+.+.|-|++.+.++...++.++-. .+|.. +++.++....      +.+-+++++.+++.+
T Consensus        92 ~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~l~-~~fd~-iv~s~~~~~~KP~p~~~~~~~~~~~~~p~~~  169 (224)
T PRK14988         92 AVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHTGLD-AHLDL-LLSTHTFGYPKEDQRLWQAVAEHTGLKAERT  169 (224)
T ss_pred             CCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHCCcH-HHCCE-EEEeeeCCCCCCCHHHHHHHHHHcCCChHHE
Confidence            678999999999998 57999999999999999999887765 47854 6555554421      344456678889999


Q ss_pred             EEEeCCccccccCCCceEE
Q 044162          226 VIVDDTESVWGGRVENLIT  244 (369)
Q Consensus       226 vIvDD~~~~w~~~~~N~I~  244 (369)
                      ++|+|++.-......+|+.
T Consensus       170 l~igDs~~di~aA~~aG~~  188 (224)
T PRK14988        170 LFIDDSEPILDAAAQFGIR  188 (224)
T ss_pred             EEEcCCHHHHHHHHHcCCe
Confidence            9999998666544556664

>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated

Probab=96.13  E-value=0.0082  Score=64.78  Aligned_cols=69  Identities=14%  Similarity=0.169  Sum_probs=57.5

Q ss_pred             CcHHHHHHHHHHh-h----------hcCceEEecccCCC-CChhHHHHHHhcCCEEEeccCCCceEEEecCCCccccccc
Q 044162          301 RDVRSCLAKIRSR-I----------LMGCTILFGDDDFE-ELPLTWSRAEEMGAICTLVTDASVTHVVSSNTQSETFEWA  368 (369)
Q Consensus       301 ~DVr~il~~~r~~-V----------L~g~~ivFSg~~p~-~~p~lw~la~~~GA~v~~~i~~~vTHvVa~~~gT~K~~~a  368 (369)
                      ++.+.+|..++.. |          |+|.++||+|-++. .+..+..+++.+||.|++.++.+|+-|||....+.|.+.|
T Consensus       566 ~~~~~~i~~L~~~gv~~~~~~~~~~~~g~~~v~TG~l~~~~R~e~~~~i~~~G~~v~~sVs~kt~~lv~G~~~gsK~~kA  645 (665)
T PRK07956        566 EENRELIDELLEAGVNMEYKGEEVDLAGKTVVLTGTLEQLSRDEAKEKLEALGAKVSGSVSKKTDLVVAGEAAGSKLAKA  645 (665)
T ss_pred             hhHHHHHHHHHHcCCCccccccCCCccccEEEEeCCCCCCCHHHHHHHHHHcCCEEeCcccCCCCEEEECCCCChHHHHH
Confidence            4567777776642 2          88999999999976 5569999999999999999999999999998767888777


Q ss_pred             C
Q 044162          369 E  369 (369)
Q Consensus       369 ~  369 (369)
                      +
T Consensus       646 ~  646 (665)
T PRK07956        646 Q  646 (665)
T ss_pred             H
Confidence            3

>PRK10826 2-deoxyglucose-6-phosphatase; Provisional

Probab=96.12  E-value=0.0051  Score=56.63  Aligned_cols=91  Identities=13%  Similarity=0.088  Sum_probs=70.4

Q ss_pred             EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCcE
Q 044162          153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENSI  225 (369)
Q Consensus       153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~v  225 (369)
                      ..+.||+.++|+.+. +.+.++|.|++.+.+++.+++.++-.+ +|. .+++.++....      +..-++.++.+.+.+
T Consensus        91 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f~-~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~  168 (222)
T PRK10826         91 RPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMFDLRD-YFD-ALASAEKLPYSKPHPEVYLNCAAKLGVDPLTC  168 (222)
T ss_pred             CCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcchh-ccc-EEEEcccCCCCCCCHHHHHHHHHHcCCCHHHe
Confidence            567899999999997 679999999999999999999988764 774 57767664321      344456677788999


Q ss_pred             EEEeCCccccccCCCceEEe
Q 044162          226 VIVDDTESVWGGRVENLITV  245 (369)
Q Consensus       226 vIvDD~~~~w~~~~~N~I~I  245 (369)
                      ++|+|+..-.......|++.
T Consensus       169 ~~igDs~~Di~aA~~aG~~~  188 (222)
T PRK10826        169 VALEDSFNGMIAAKAARMRS  188 (222)
T ss_pred             EEEcCChhhHHHHHHcCCEE
Confidence            99999997665544555543

>TIGR03351 PhnX-like phosphonatase-like hydrolase

Probab=95.89  E-value=0.015  Score=53.32  Aligned_cols=91  Identities=13%  Similarity=0.075  Sum_probs=67.1

Q ss_pred             EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCC-CcccceEEeeccccCc------ccccccccCCC-CC
Q 044162          153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDC-KYFNSRIITREDFKQK------ERKYLDLVLGQ-EN  223 (369)
Q Consensus       153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~-~~f~~Ri~srd~~~~~------~~KdL~~l~~~-~~  223 (369)
                      ..+.||+.++|+.+. +.+.+.|-|++.+.++..+++.++-.. .+|. .+++.++....      +.+-+++++.. .+
T Consensus        86 ~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~~~~~f~-~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~  164 (220)
T TIGR03351        86 PVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWTVGDDVD-AVVCPSDVAAGRPAPDLILRAMELTGVQDVQ  164 (220)
T ss_pred             CccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhhhhccCC-EEEcCCcCCCCCCCHHHHHHHHHHcCCCChh
Confidence            579999999999996 789999999999999999999988652 5784 57766664321      23445566655 68


Q ss_pred             cEEEEeCCccccccCCCceEE
Q 044162          224 SIVIVDDTESVWGGRVENLIT  244 (369)
Q Consensus       224 ~vvIvDD~~~~w~~~~~N~I~  244 (369)
                      .+++|+|++.-.......++.
T Consensus       165 ~~~~igD~~~Di~aa~~aG~~  185 (220)
T TIGR03351       165 SVAVAGDTPNDLEAGINAGAG  185 (220)
T ss_pred             HeEEeCCCHHHHHHHHHCCCC
Confidence            999999998444333334444

This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the

>PRK13222 phosphoglycolate phosphatase; Provisional

Probab=95.88  E-value=0.017  Score=52.75  Aligned_cols=90  Identities=14%  Similarity=0.128  Sum_probs=66.5

Q ss_pred             EEEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCc
Q 044162          152 LVKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENS  224 (369)
Q Consensus       152 ~vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~  224 (369)
                      ..+++||+.+||+.+. ..+.++|.|++...++..+++.++-. .+|. .+++.++....      +.+-++.++.+.+.
T Consensus        91 ~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~-~~f~-~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~  168 (226)
T PRK13222         91 GSRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALGIA-DYFS-VVIGGDSLPNKKPDPAPLLLACEKLGLDPEE  168 (226)
T ss_pred             cCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCc-cCcc-EEEcCCCCCCCCcChHHHHHHHHHcCCChhh
Confidence            4778999999999998 57999999999999999999998876 4674 56765543321      23344556778899


Q ss_pred             EEEEeCCccccccCCCceE
Q 044162          225 IVIVDDTESVWGGRVENLI  243 (369)
Q Consensus       225 vvIvDD~~~~w~~~~~N~I  243 (369)
                      +++|+|++.-.......++
T Consensus       169 ~i~igD~~~Di~~a~~~g~  187 (226)
T PRK13222        169 MLFVGDSRNDIQAARAAGC  187 (226)
T ss_pred             eEEECCCHHHHHHHHHCCC
Confidence            9999999755543333333

>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]

Probab=95.83  E-value=0.017  Score=52.87  Aligned_cols=82  Identities=20%  Similarity=0.204  Sum_probs=66.1

Q ss_pred             EEEeCccHHHHHHHHhcCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccC------cccccccccCCCCCcE
Q 044162          152 LVKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQ------KERKYLDLVLGQENSI  225 (369)
Q Consensus       152 ~vklRPgl~eFL~~ls~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~------~~~KdL~~l~~~~~~v  225 (369)
                      .+..-|++.++|+.+.+.|.++|.|+|...++...++.+.-. .+|.. +++.++.+.      .+..-++.++.+++.+
T Consensus        97 ~~~~~~~~~~~L~~l~~~~~l~ilTNg~~~~~~~~l~~~gl~-~~Fd~-v~~s~~~g~~KP~~~~f~~~~~~~g~~p~~~  174 (229)
T COG1011          97 LLPDYPEALEALKELGKKYKLGILTNGARPHQERKLRQLGLL-DYFDA-VFISEDVGVAKPDPEIFEYALEKLGVPPEEA  174 (229)
T ss_pred             hCccChhHHHHHHHHHhhccEEEEeCCChHHHHHHHHHcCCh-hhhhe-EEEecccccCCCCcHHHHHHHHHcCCCcceE
Confidence            378889999999999877999999999999999999999844 68854 666676652      1344566677789999


Q ss_pred             EEEeCCcccc
Q 044162          226 VIVDDTESVW  235 (369)
Q Consensus       226 vIvDD~~~~w  235 (369)
                      ++|||+...-
T Consensus       175 l~VgD~~~~d  184 (229)
T COG1011         175 LFVGDSLEND  184 (229)
T ss_pred             EEECCChhhh
Confidence            9999998544

>PRK11587 putative phosphatase; Provisional

Probab=95.83  E-value=0.013  Score=53.81  Aligned_cols=90  Identities=14%  Similarity=-0.009  Sum_probs=66.3

Q ss_pred             EEEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccC------cccccccccCCCCCc
Q 044162          152 LVKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQ------KERKYLDLVLGQENS  224 (369)
Q Consensus       152 ~vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~------~~~KdL~~l~~~~~~  224 (369)
                      .+.+.||+.++|+.+. +.+.+.|-|++++.++..+++...-.  +| .-+++.++...      .+.+-++.++..++.
T Consensus        81 ~~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~~l~--~~-~~i~~~~~~~~~KP~p~~~~~~~~~~g~~p~~  157 (218)
T PRK11587         81 GITALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAAGLP--AP-EVFVTAERVKRGKPEPDAYLLGAQLLGLAPQE  157 (218)
T ss_pred             CceeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhcCCC--Cc-cEEEEHHHhcCCCCCcHHHHHHHHHcCCCccc
Confidence            4678999999999996 67999999999999988887766542  35 34666665432      145556677888899


Q ss_pred             EEEEeCCccccccCCCceEE
Q 044162          225 IVIVDDTESVWGGRVENLIT  244 (369)
Q Consensus       225 vvIvDD~~~~w~~~~~N~I~  244 (369)
                      +++|+|++.-.......|+.
T Consensus       158 ~l~igDs~~di~aA~~aG~~  177 (218)
T PRK11587        158 CVVVEDAPAGVLSGLAAGCH  177 (218)
T ss_pred             EEEEecchhhhHHHHHCCCE
Confidence            99999998555443445554

>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family

Probab=95.81  E-value=0.013  Score=51.33  Aligned_cols=86  Identities=12%  Similarity=0.058  Sum_probs=56.5

Q ss_pred             EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCcccccccccCCCCCcEEEEeCC
Q 044162          153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKYLDLVLGQENSIVIVDDT  231 (369)
Q Consensus       153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~~~KdL~~l~~~~~~vvIvDD~  231 (369)
                      +.++|+.  -++++. +.+.++|.|+..+..+..+++.+.-. .+|...    ........+-++.++.+.+.++.|-|+
T Consensus        29 ~~~~~~~--~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~gi~-~~~~~~----~~k~~~~~~~~~~~~~~~~~~~~vGDs  101 (154)
T TIGR01670        29 FNVRDGY--GIRCALKSGIEVAIITGRKAKLVEDRCKTLGIT-HLYQGQ----SNKLIAFSDILEKLALAPENVAYIGDD  101 (154)
T ss_pred             EechhHH--HHHHHHHCCCEEEEEECCCCHHHHHHHHHcCCC-EEEecc----cchHHHHHHHHHHcCCCHHHEEEECCC
Confidence            4667776  677776 57999999999999999999998876 355321    111111223334556677899999998


Q ss_pred             ccccccCCCceEEe
Q 044162          232 ESVWGGRVENLITV  245 (369)
Q Consensus       232 ~~~w~~~~~N~I~I  245 (369)
                      ..=...-...++.+
T Consensus       102 ~~D~~~~~~ag~~~  115 (154)
T TIGR01670       102 LIDWPVMEKVGLSV  115 (154)
T ss_pred             HHHHHHHHHCCCeE
Confidence            75554433444443

The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.

>PRK09456 ?-D-glucose-1-phosphatase; Provisional

Probab=95.78  E-value=0.0061  Score=55.30  Aligned_cols=96  Identities=18%  Similarity=0.045  Sum_probs=67.8

Q ss_pred             EEEEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCC
Q 044162          151 LLVKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQEN  223 (369)
Q Consensus       151 ~~vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~  223 (369)
                      ++..+.||+.++|+.+. +.|.++|-|++.+..+..++.....-..+|. .+++.++....      +..-++.++.+++
T Consensus        81 ~~~~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~~fd-~v~~s~~~~~~KP~p~~~~~~~~~~~~~p~  159 (199)
T PRK09456         81 VFVALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRAAAD-HIYLSQDLGMRKPEARIYQHVLQAEGFSAA  159 (199)
T ss_pred             HHhccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHHhcC-EEEEecccCCCCCCHHHHHHHHHHcCCChh
Confidence            34678999999999997 5799999999998876655433211124674 57766665532      4455677788999


Q ss_pred             cEEEEeCCccccccCCCceEEeCc
Q 044162          224 SIVIVDDTESVWGGRVENLITVGS  247 (369)
Q Consensus       224 ~vvIvDD~~~~w~~~~~N~I~I~~  247 (369)
                      .+++|||++.-.......|+..--
T Consensus       160 ~~l~vgD~~~di~aA~~aG~~~i~  183 (199)
T PRK09456        160 DAVFFDDNADNIEAANALGITSIL  183 (199)
T ss_pred             HeEEeCCCHHHHHHHHHcCCEEEE
Confidence            999999998655444556666543

>COG5275 BRCT domain type II [General function prediction only]

Probab=95.73  E-value=0.01  Score=54.71  Aligned_cols=61  Identities=18%  Similarity=0.112  Sum_probs=51.5

Q ss_pred             HHHHHhhhcCceEEecccCCC-CChhHHHHHHhcCCEEEeccCCCceEEEec-CCCccccccc
Q 044162          308 AKIRSRILMGCTILFGDDDFE-ELPLTWSRAEEMGAICTLVTDASVTHVVSS-NTQSETFEWA  368 (369)
Q Consensus       308 ~~~r~~VL~g~~ivFSg~~p~-~~p~lw~la~~~GA~v~~~i~~~vTHvVa~-~~gT~K~~~a  368 (369)
                      .+..+.-|+|..|||+|++|. .+...-.|+..+||+|+..+...+|-+|+. +.|..|++-+
T Consensus       150 peg~~~cL~G~~fVfTG~l~TlsR~~a~~lvk~yGgrvT~~pSskTtflvlGdnaGP~K~eki  212 (276)
T COG5275         150 PEGERECLKGKVFVFTGDLKTLSRDDAKTLVKVYGGRVTAVPSSKTTFLVLGDNAGPSKMEKI  212 (276)
T ss_pred             CCCCcccccccEEEEecccccccchhHHHHHHHhCCeeecccccceeEEEecCCCChHHHHHH
Confidence            446778899999999999994 566778899999999999999999999997 4677776544

>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional

Probab=95.72  E-value=0.015  Score=63.02  Aligned_cols=55  Identities=18%  Similarity=0.068  Sum_probs=47.8

Q ss_pred             hcCceEEecccCCC-CChhHHHHHHhcCCEEEeccCCCceEEEecC-CCcccccccC
Q 044162          315 LMGCTILFGDDDFE-ELPLTWSRAEEMGAICTLVTDASVTHVVSSN-TQSETFEWAE  369 (369)
Q Consensus       315 L~g~~ivFSg~~p~-~~p~lw~la~~~GA~v~~~i~~~vTHvVa~~-~gT~K~~~a~  369 (369)
                      |.|.++||+|.+.. .+..+..+++++||++..+++.+|+.||+.. .|..|.+.|+
T Consensus       610 l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~sVs~kt~~Lv~G~~~g~sKl~kA~  666 (689)
T PRK14351        610 LDGLTFVFTGSLSGYTRSEAQELVEAHGGNATGSVSGNTDYLVVGENPGQSKRDDAE  666 (689)
T ss_pred             CCCcEEEEccCCCCCCHHHHHHHHHHcCCEEcCCcCCCccEEEEcCCCChhHHHHHH
Confidence            88999999999876 4669999999999999999999999999986 4447877763

>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]

Probab=95.58  E-value=0.019  Score=53.39  Aligned_cols=50  Identities=10%  Similarity=0.077  Sum_probs=44.1

Q ss_pred             EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEe
Q 044162          153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIIT  203 (369)
Q Consensus       153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~s  203 (369)
                      ++++||+.+.++.+. ..+.++|.|.|-..++++|++.+.-+. .+.+++..
T Consensus        76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~-~~an~l~~  126 (212)
T COG0560          76 LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDY-VVANELEI  126 (212)
T ss_pred             CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCch-heeeEEEE
Confidence            899999999999997 679999999999999999999999884 56665553

>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459

Probab=95.56  E-value=0.025  Score=53.11  Aligned_cols=76  Identities=12%  Similarity=0.020  Sum_probs=50.7

Q ss_pred             CccHHHHHHHHh-cCccEEEecCCcHHHHH--HHHHHhCCCCCcccceEEeeccccCccccc-ccccCCCCCcEEEEeCC
Q 044162          156 RPFVRSFLEEAS-RLFEISVCTLGNREYAT--RAVKLLDPDCKYFNSRIITREDFKQKERKY-LDLVLGQENSIVIVDDT  231 (369)
Q Consensus       156 RPgl~eFL~~ls-~~yEi~I~T~g~~~YA~--~i~~~lDp~~~~f~~Ri~srd~~~~~~~Kd-L~~l~~~~~~vvIvDD~  231 (369)
                      -||+.++|+++. +.+.++|.|++++..+.  +.++.++....+|. -|++.++....+... ++.++.+...+++|-|.
T Consensus        26 ~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~~~~~~-~Ii~s~~~~~~~l~~~~~~~~~~~~~~~~vGd~  104 (242)
T TIGR01459        26 YPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGINADLPE-MIISSGEIAVQMILESKKRFDIRNGIIYLLGHL  104 (242)
T ss_pred             CccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCCccccc-eEEccHHHHHHHHHhhhhhccCCCceEEEeCCc
Confidence            499999999997 67999999999998877  67777776532563 477655433222221 22334445667777775


Q ss_pred             c
Q 044162          232 E  232 (369)
Q Consensus       232 ~  232 (369)
                      +
T Consensus       105 ~  105 (242)
T TIGR01459       105 E  105 (242)
T ss_pred             c
Confidence            4

This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)

>PLN02779 haloacid dehalogenase-like hydrolase family protein

Probab=95.52  E-value=0.014  Score=56.38  Aligned_cols=92  Identities=17%  Similarity=0.203  Sum_probs=65.1

Q ss_pred             EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccc-eEEeeccccCc------ccccccccCCCCCc
Q 044162          153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNS-RIITREDFKQK------ERKYLDLVLGQENS  224 (369)
Q Consensus       153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~-Ri~srd~~~~~------~~KdL~~l~~~~~~  224 (369)
                      +++.||+.++|+.+. +.+.++|-|++++.++..+++.+.-. .+|.. .+++.+++...      +.+-++.++.+.+.
T Consensus       143 ~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~~~-~~~~~~~~v~~~~~~~~KP~p~~~~~a~~~~~~~p~~  221 (286)
T PLN02779        143 LPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLGP-ERAQGLDVFAGDDVPKKKPDPDIYNLAAETLGVDPSR  221 (286)
T ss_pred             CCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhccc-cccCceEEEeccccCCCCCCHHHHHHHHHHhCcChHH
Confidence            578999999999997 67999999999999999999876311 13332 23345554321      23445667778899


Q ss_pred             EEEEeCCccccccCCCceEEe
Q 044162          225 IVIVDDTESVWGGRVENLITV  245 (369)
Q Consensus       225 vvIvDD~~~~w~~~~~N~I~I  245 (369)
                      +++|+|++.-+.....+|+.+
T Consensus       222 ~l~IGDs~~Di~aA~~aG~~~  242 (286)
T PLN02779        222 CVVVEDSVIGLQAAKAAGMRC  242 (286)
T ss_pred             EEEEeCCHHhHHHHHHcCCEE
Confidence            999999987665544555443

>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase

Probab=95.52  E-value=0.0084  Score=53.06  Aligned_cols=87  Identities=16%  Similarity=0.213  Sum_probs=62.6

Q ss_pred             EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCcE
Q 044162          153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENSI  225 (369)
Q Consensus       153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~v  225 (369)
                      +.+.||+.++|+.+. ..+.+.|-|++  .+++.+++.++-. .+|. .+++.++....      +.+-++.++...+.+
T Consensus        87 ~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~~l~-~~f~-~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~  162 (185)
T TIGR02009        87 AEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKLGLT-DYFD-AIVDADEVKEGKPHPETFLLAAELLGVSPNEC  162 (185)
T ss_pred             CCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHcChH-HHCC-EeeehhhCCCCCCChHHHHHHHHHcCCCHHHe
Confidence            678999999999997 56899999988  7899999887766 4785 45555544321      234455667778999


Q ss_pred             EEEeCCccccccCCCceE
Q 044162          226 VIVDDTESVWGGRVENLI  243 (369)
Q Consensus       226 vIvDD~~~~w~~~~~N~I  243 (369)
                      |+|+|++.-......+++
T Consensus       163 v~IgD~~~di~aA~~~G~  180 (185)
T TIGR02009       163 VVFEDALAGVQAARAAGM  180 (185)
T ss_pred             EEEeCcHhhHHHHHHCCC
Confidence            999999755443334444

All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).

>PLN03122 Poly [ADP-ribose] polymerase; Provisional

Probab=95.43  E-value=0.013  Score=64.35  Aligned_cols=59  Identities=17%  Similarity=0.031  Sum_probs=48.4

Q ss_pred             HHHhhhcCceEEecccCCCCChhHHHHHHhcCCEEEeccCCCceEEEecC-----CCcccccccC
Q 044162          310 IRSRILMGCTILFGDDDFEELPLTWSRAEEMGAICTLVTDASVTHVVSSN-----TQSETFEWAE  369 (369)
Q Consensus       310 ~r~~VL~g~~ivFSg~~p~~~p~lw~la~~~GA~v~~~i~~~vTHvVa~~-----~gT~K~~~a~  369 (369)
                      .....|.|+.|+|+|-++..+..+-.+.+.+||++++.+ .+.||+|++.     .|+.|++.|+
T Consensus       185 ~~~kpL~G~~fviTGtl~~sr~elK~~Ie~~GGkvsssV-s~~T~lIvt~~ev~k~gsSKlkkAk  248 (815)
T PLN03122        185 APGKPFSGMMISLSGRLSRTHQYWKKDIEKHGGKVANSV-EGVTCLVVSPAERERGGSSKIAEAM  248 (815)
T ss_pred             ccCCCcCCcEEEEeCCCCCCHHHHHHHHHHcCCEEcccc-ccceEEEEcCccccccCccHHHHHH
Confidence            345679999999999987645588889999999999999 5788999876     3567888774

>PRK13478 phosphonoacetaldehyde hydrolase; Provisional

Probab=95.38  E-value=0.021  Score=54.29  Aligned_cols=91  Identities=20%  Similarity=0.061  Sum_probs=67.5

Q ss_pred             EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCC-CCc
Q 044162          153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQ-ENS  224 (369)
Q Consensus       153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~-~~~  224 (369)
                      +.+-||+.++|+.+. +.+.+.|-|++.+..+..+++.+.-.+ +|.+.+++.++....      +.+-+++++.. .+.
T Consensus       100 ~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~~l~~-~~~d~i~~~~~~~~~KP~p~~~~~a~~~l~~~~~~e  178 (267)
T PRK13478        100 ATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLAAAQG-YRPDHVVTTDDVPAGRPYPWMALKNAIELGVYDVAA  178 (267)
T ss_pred             CCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHhhcC-CCceEEEcCCcCCCCCCChHHHHHHHHHcCCCCCcc
Confidence            577899999999996 679999999999999999999877654 443567777665421      34455667754 688


Q ss_pred             EEEEeCCccccccCCCceEE
Q 044162          225 IVIVDDTESVWGGRVENLIT  244 (369)
Q Consensus       225 vvIvDD~~~~w~~~~~N~I~  244 (369)
                      +++|+|++.-.......|+.
T Consensus       179 ~l~IGDs~~Di~aA~~aG~~  198 (267)
T PRK13478        179 CVKVDDTVPGIEEGLNAGMW  198 (267)
T ss_pred             eEEEcCcHHHHHHHHHCCCE
Confidence            99999998555444445554

>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []

Probab=95.33  E-value=0.015  Score=51.46  Aligned_cols=52  Identities=25%  Similarity=0.224  Sum_probs=34.3

Q ss_pred             EEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHHHHHHHh-cCccEE
Q 044162           95 HLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEAS-RLFEIS  173 (369)
Q Consensus        95 ~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~eFL~~ls-~~yEi~  173 (369)
                      ++.+|||||||.+......+..                   |             .=|..+-|++.+-|+++. +.|.|+
T Consensus         2 ia~fD~DgTLi~~~s~~~f~~~-------------------~-------------~D~~~~~~~v~~~L~~l~~~Gy~Iv   49 (159)
T PF08645_consen    2 IAFFDLDGTLIKTKSGKKFPKD-------------------P-------------DDWKFFPPGVPEALRELHKKGYKIV   49 (159)
T ss_dssp             EEEE-SCTTTEE-STSTTS-SS-------------------T-------------CGGEEC-TTHHHHHHHHHHTTEEEE
T ss_pred             EEEEeCCCCccCCCCCCcCcCC-------------------H-------------HHhhhcchhHHHHHHHHHhcCCeEE
Confidence            6789999999998764321110                   0             012345688999999997 699999


Q ss_pred             EecCC
Q 044162          174 VCTLG  178 (369)
Q Consensus       174 I~T~g  178 (369)
                      |+|+-
T Consensus        50 IvTNQ   54 (159)
T PF08645_consen   50 IVTNQ   54 (159)
T ss_dssp             EEEE-
T ss_pred             EEeCc
Confidence            99986

; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....

>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E

Probab=95.32  E-value=0.046  Score=47.03  Aligned_cols=76  Identities=13%  Similarity=0.111  Sum_probs=56.9

Q ss_pred             EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc-----ccccccccCCCCCcEE
Q 044162          153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK-----ERKYLDLVLGQENSIV  226 (369)
Q Consensus       153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~-----~~KdL~~l~~~~~~vv  226 (369)
                      ....||+.++|+.+. +.+.++|.|++.+.++..+++.+ - ..+|. .+++.++....     +.+-++.++.+. .++
T Consensus        63 ~~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~-l-~~~f~-~i~~~~~~~~Kp~~~~~~~~~~~~~~~~-~~l  138 (154)
T TIGR01549        63 EAYIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH-L-GDYFD-LILGSDEFGAKPEPEIFLAALESLGLPP-EVL  138 (154)
T ss_pred             heeccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH-H-HhcCc-EEEecCCCCCCcCHHHHHHHHHHcCCCC-CEE
Confidence            445699999999995 67999999999999999999885 2 24674 57766665411     233345566666 899


Q ss_pred             EEeCCc
Q 044162          227 IVDDTE  232 (369)
Q Consensus       227 IvDD~~  232 (369)
                      +|+|++
T Consensus       139 ~iGDs~  144 (154)
T TIGR01549       139 HVGDNL  144 (154)
T ss_pred             EEeCCH
Confidence            999985

HAD subfamilies caused by an overly broad single model.

>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase

Probab=95.15  E-value=0.04  Score=49.71  Aligned_cols=77  Identities=12%  Similarity=0.106  Sum_probs=57.5

Q ss_pred             EEeCccHHHHHHHHhc-CccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCcE
Q 044162          153 VKLRPFVRSFLEEASR-LFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENSI  225 (369)
Q Consensus       153 vklRPgl~eFL~~ls~-~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~v  225 (369)
                      +++-||+.++|+.+.+ .+.+.|.|++.+.+ ..+++.++-. .+|. .+++.++....      +.+-++.++.+.+.+
T Consensus       104 ~~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~~-~~~l~~~~l~-~~fd-~i~~s~~~~~~KP~~~~~~~~~~~~~~~~~~~  180 (203)
T TIGR02252       104 WQVYPDAIKLLKDLRERGLILGVISNFDSRL-RGLLEALGLL-EYFD-FVVTSYEVGAEKPDPKIFQEALERAGISPEEA  180 (203)
T ss_pred             ceeCcCHHHHHHHHHHCCCEEEEEeCCchhH-HHHHHHCCcH-Hhcc-eEEeecccCCCCCCHHHHHHHHHHcCCChhHE
Confidence            4678999999999984 69999999998764 6777777655 3674 46655554421      334455677788999


Q ss_pred             EEEeCCc
Q 044162          226 VIVDDTE  232 (369)
Q Consensus       226 vIvDD~~  232 (369)
                      ++|+|+.
T Consensus       181 ~~IgD~~  187 (203)
T TIGR02252       181 LHIGDSL  187 (203)
T ss_pred             EEECCCc
Confidence            9999986

Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.

>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548

Probab=95.11  E-value=0.06  Score=48.62  Aligned_cols=77  Identities=18%  Similarity=0.032  Sum_probs=59.8

Q ss_pred             EeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc-----ccccccccCCCCCcEEE
Q 044162          154 KLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK-----ERKYLDLVLGQENSIVI  227 (369)
Q Consensus       154 klRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~-----~~KdL~~l~~~~~~vvI  227 (369)
                      +..|+..++|+.+. +.+.+.|.|++.+.+++.+++.++-. .+|. .+++.++....     +.+-++.++.+.+.+++
T Consensus       106 ~~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~-~~f~-~~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~i~  183 (197)
T TIGR01548       106 ETLLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTHGLE-ILFP-VQIWMEDCPPKPNPEPLILAAKALGVEACHAAM  183 (197)
T ss_pred             ccccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHcCch-hhCC-EEEeecCCCCCcCHHHHHHHHHHhCcCcccEEE
Confidence            45566799999998 56999999999999999999999876 4784 56666654321     23445567778889999


Q ss_pred             EeCCc
Q 044162          228 VDDTE  232 (369)
Q Consensus       228 vDD~~  232 (369)
                      |+|++
T Consensus       184 vGD~~  188 (197)
T TIGR01548       184 VGDTV  188 (197)
T ss_pred             EeCCH
Confidence            99987

All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.

>TIGR01990 bPGM beta-phosphoglucomutase

Probab=95.08  E-value=0.016  Score=51.30  Aligned_cols=88  Identities=11%  Similarity=0.146  Sum_probs=61.4

Q ss_pred             EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccC------cccccccccCCCCCcE
Q 044162          153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQ------KERKYLDLVLGQENSI  225 (369)
Q Consensus       153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~------~~~KdL~~l~~~~~~v  225 (369)
                      .++.||+.++|+.+. ..+.+.|-|++.  .+..+++.++-. .+|. .+++.++...      .+.+-+++++.+.+.+
T Consensus        86 ~~~~pg~~~~L~~L~~~g~~~~i~s~~~--~~~~~l~~~~l~-~~f~-~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~  161 (185)
T TIGR01990        86 ADVLPGIKNLLDDLKKNNIKIALASASK--NAPTVLEKLGLI-DYFD-AIVDPAEIKKGKPDPEIFLAAAEGLGVSPSEC  161 (185)
T ss_pred             cccCccHHHHHHHHHHCCCeEEEEeCCc--cHHHHHHhcCcH-hhCc-EEEehhhcCCCCCChHHHHHHHHHcCCCHHHe
Confidence            467899999999996 679999999875  356778888766 4674 4665554332      1345566677788899


Q ss_pred             EEEeCCccccccCCCceEE
Q 044162          226 VIVDDTESVWGGRVENLIT  244 (369)
Q Consensus       226 vIvDD~~~~w~~~~~N~I~  244 (369)
                      |+|+|++.-......++++
T Consensus       162 v~vgD~~~di~aA~~aG~~  180 (185)
T TIGR01990       162 IGIEDAQAGIEAIKAAGMF  180 (185)
T ss_pred             EEEecCHHHHHHHHHcCCE
Confidence            9999997544333344443

The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.

>TIGR00575 dnlj DNA ligase, NAD-dependent

Probab=95.00  E-value=0.024  Score=61.11  Aligned_cols=55  Identities=13%  Similarity=0.103  Sum_probs=47.9

Q ss_pred             hcCceEEecccCCC-CChhHHHHHHhcCCEEEeccCCCceEEEecCCCcccccccC
Q 044162          315 LMGCTILFGDDDFE-ELPLTWSRAEEMGAICTLVTDASVTHVVSSNTQSETFEWAE  369 (369)
Q Consensus       315 L~g~~ivFSg~~p~-~~p~lw~la~~~GA~v~~~i~~~vTHvVa~~~gT~K~~~a~  369 (369)
                      |.|.++||+|-++. .+..+..+++.+||+|+++++.+|+.||+......|.+.|+
T Consensus       585 l~gk~~v~TG~l~~~~R~~~~~~i~~~G~~v~~sVs~kt~~lv~G~~~gsKl~kA~  640 (652)
T TIGR00575       585 LAGKTFVLTGTLSQMSRDEAKELLENLGGKVASSVSKKTDYVIAGEKAGSKLAKAQ  640 (652)
T ss_pred             ccCcEEEEeccCCCCCHHHHHHHHHHcCCEEeCCcCCCccEEEECCCCChHHHHHH
Confidence            78999999999875 45689999999999999999999999999976556887763

The member of this family from Treponema pallidum differs in having three rather than just one copy of the BRCT (BRCA1 C Terminus) domain (pfam00533) at the C-terminus. It is included in the seed.

>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal

Probab=94.93  E-value=0.025  Score=50.64  Aligned_cols=82  Identities=15%  Similarity=0.183  Sum_probs=59.1

Q ss_pred             EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccC---c------ccc--c----cc
Q 044162          153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQ---K------ERK--Y----LD  216 (369)
Q Consensus       153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~---~------~~K--d----L~  216 (369)
                      +.++||+.++|+.+. +.+.++|.|++...+++.+++.++.+ .+|...+.+.+....   .      .-|  -    ++
T Consensus        79 ~~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~-~~~~~~~~~~~~g~~~p~~~~~~~~~~k~~~~~~~~~  157 (201)
T TIGR01491        79 ISLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPD-YVYSNELVFDEKGFIQPDGIVRVTFDNKGEAVERLKR  157 (201)
T ss_pred             CCCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCC-eEEEEEEEEcCCCeEecceeeEEccccHHHHHHHHHH
Confidence            678999999999997 67999999999999999999999866 467665554322110   0      011  1    22


Q ss_pred             ccCCCCCcEEEEeCCcccc
Q 044162          217 LVLGQENSIVIVDDTESVW  235 (369)
Q Consensus       217 ~l~~~~~~vvIvDD~~~~w  235 (369)
                      .++.+.+.+++|.|+..-.
T Consensus       158 ~~~~~~~~~i~iGDs~~D~  176 (201)
T TIGR01491       158 ELNPSLTETVAVGDSKNDL  176 (201)
T ss_pred             HhCCCHHHEEEEcCCHhHH
Confidence            3455678899999997443

This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.

>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase

Probab=94.77  E-value=0.069  Score=45.66  Aligned_cols=50  Identities=16%  Similarity=0.029  Sum_probs=37.0

Q ss_pred             EeCccHHHHHHHH-hcCccEEEecCCcHHHHH------------HHHHHhCCCCCcccceEEee
Q 044162          154 KLRPFVRSFLEEA-SRLFEISVCTLGNREYAT------------RAVKLLDPDCKYFNSRIITR  204 (369)
Q Consensus       154 klRPgl~eFL~~l-s~~yEi~I~T~g~~~YA~------------~i~~~lDp~~~~f~~Ri~sr  204 (369)
                      ...|.+.+-|+++ .+.+++++.|+-......            .+.+.|+.++--+ +.|+-|
T Consensus        24 ~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ipY-d~l~~~   86 (126)
T TIGR01689        24 APILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVPY-DEIYVG   86 (126)
T ss_pred             ccCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCCC-ceEEeC
Confidence            3578888999988 578999999988877766            6777887776333 445533

Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.

>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]

Probab=94.74  E-value=0.051  Score=58.02  Aligned_cols=57  Identities=16%  Similarity=0.069  Sum_probs=49.5

Q ss_pred             hhhcCceEEecccCCC-CChhHHHHHHhcCCEEEeccCCCceEEEecCCCcccccccC
Q 044162          313 RILMGCTILFGDDDFE-ELPLTWSRAEEMGAICTLVTDASVTHVVSSNTQSETFEWAE  369 (369)
Q Consensus       313 ~VL~g~~ivFSg~~p~-~~p~lw~la~~~GA~v~~~i~~~vTHvVa~~~gT~K~~~a~  369 (369)
                      .+|.|.++||+|-++. .+..+..+++++||+|+.+++.+|.-|||...-..|...|+
T Consensus       593 ~~l~gkt~V~TGtL~~~sR~eak~~le~lGakv~~SVSkktD~vvaG~~aGSKl~kA~  650 (667)
T COG0272         593 SPLAGKTFVLTGTLEGMSRDEAKALLEALGAKVSGSVSKKTDYVVAGENAGSKLAKAQ  650 (667)
T ss_pred             cccCCCEEEEeccCCCCCHHHHHHHHHHcCCEEeceecccccEEEEcCCCChHHHHHH
Confidence            4599999999999985 45588889999999999999999999999987777887663

>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase

Probab=94.67  E-value=0.015  Score=52.99  Aligned_cols=92  Identities=18%  Similarity=0.048  Sum_probs=60.5

Q ss_pred             EEEeCccHHHHHHHHh-cCccEEEecCCcHHH--HHHHHHHhCCCCCcccceEEeeccccC------cccccccccCCCC
Q 044162          152 LVKLRPFVRSFLEEAS-RLFEISVCTLGNREY--ATRAVKLLDPDCKYFNSRIITREDFKQ------KERKYLDLVLGQE  222 (369)
Q Consensus       152 ~vklRPgl~eFL~~ls-~~yEi~I~T~g~~~Y--A~~i~~~lDp~~~~f~~Ri~srd~~~~------~~~KdL~~l~~~~  222 (369)
                      .+++.||+.++|+.+. +.|.++|.|++...+  +...+..++-. .+|. .+++.++...      .+.+-+++++.+.
T Consensus        92 ~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l~-~~fd-~v~~s~~~~~~KP~p~~~~~~~~~~g~~~  169 (211)
T TIGR02247        92 NTKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDIM-ALFD-AVVESCLEGLRKPDPRIYQLMLERLGVAP  169 (211)
T ss_pred             ccccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhhH-hhCC-EEEEeeecCCCCCCHHHHHHHHHHcCCCH
Confidence            4678999999999997 579999999987655  32222222222 4674 4665554432      1345566777788


Q ss_pred             CcEEEEeCCccccccCCCceEEe
Q 044162          223 NSIVIVDDTESVWGGRVENLITV  245 (369)
Q Consensus       223 ~~vvIvDD~~~~w~~~~~N~I~I  245 (369)
                      +.+++|||++.-.......|+..
T Consensus       170 ~~~l~i~D~~~di~aA~~aG~~~  192 (211)
T TIGR02247       170 EECVFLDDLGSNLKPAAALGITT  192 (211)
T ss_pred             HHeEEEcCCHHHHHHHHHcCCEE
Confidence            89999999986554434455544

These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.

>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase

Probab=94.61  E-value=0.085  Score=48.49  Aligned_cols=51  Identities=10%  Similarity=0.038  Sum_probs=41.8

Q ss_pred             EEEeCccHHHHHHHHhc-CccEEEecCCcHHHHHHHHHHhCCCCCcccceEE
Q 044162          152 LVKLRPFVRSFLEEASR-LFEISVCTLGNREYATRAVKLLDPDCKYFNSRII  202 (369)
Q Consensus       152 ~vklRPgl~eFL~~ls~-~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~  202 (369)
                      .+.+|||+.+||+.+.+ .+.++|.|++.+.|++.+++.+.+...++.++..
T Consensus        68 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~~~i~~n~~~  119 (214)
T TIGR03333        68 TAEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGIVEKDRIYCNEAD  119 (214)
T ss_pred             cCcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhhCCcccEEeceeE
Confidence            47899999999999985 6999999999999999999988654444444433

Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.

>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase

Probab=94.57  E-value=0.037  Score=51.73  Aligned_cols=92  Identities=16%  Similarity=0.058  Sum_probs=63.7

Q ss_pred             EEEEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhC---CCCCcccceEEeecccc----CcccccccccCCCC
Q 044162          151 LLVKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLD---PDCKYFNSRIITREDFK----QKERKYLDLVLGQE  222 (369)
Q Consensus       151 ~~vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lD---p~~~~f~~Ri~srd~~~----~~~~KdL~~l~~~~  222 (369)
                      ....+.||+.++|+.+. +.+.++|+|+++..+...+++..+   -. .+|.. ++....+.    ..+.+-++.++.++
T Consensus        92 ~~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~~~L~-~~f~~-~fd~~~g~KP~p~~y~~i~~~lgv~p  169 (220)
T TIGR01691        92 LTSHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDAGNLT-PYFSG-YFDTTVGLKTEAQSYVKIAGQLGSPP  169 (220)
T ss_pred             cccCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhccccchh-hhcce-EEEeCcccCCCHHHHHHHHHHhCcCh
Confidence            34568999999999996 689999999999999998887753   22 24543 33211111    12455567778888


Q ss_pred             CcEEEEeCCccccccCCCceEE
Q 044162          223 NSIVIVDDTESVWGGRVENLIT  244 (369)
Q Consensus       223 ~~vvIvDD~~~~w~~~~~N~I~  244 (369)
                      +.+++|+|+..-.......|+.
T Consensus       170 ~e~lfVgDs~~Di~AA~~AG~~  191 (220)
T TIGR01691       170 REILFLSDIINELDAARKAGLH  191 (220)
T ss_pred             hHEEEEeCCHHHHHHHHHcCCE
Confidence            9999999998655443344443

This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.

>PRK11133 serB phosphoserine phosphatase; Provisional

Probab=94.42  E-value=0.041  Score=54.38  Aligned_cols=93  Identities=10%  Similarity=0.000  Sum_probs=60.6

Q ss_pred             EEEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeec---------cccCc-----cccc-c
Q 044162          152 LVKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITRE---------DFKQK-----ERKY-L  215 (369)
Q Consensus       152 ~vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd---------~~~~~-----~~Kd-L  215 (369)
                      .+.++||+.++|+.+. ..+.+.|.|.|...+++.+.+.++-+. +|.+++--.+         +....     ..+. +
T Consensus       179 ~l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lgld~-~~an~lei~dg~ltg~v~g~iv~~k~K~~~L~~la  257 (322)
T PRK11133        179 NLPLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKLRLDA-AVANELEIMDGKLTGNVLGDIVDAQYKADTLTRLA  257 (322)
T ss_pred             hCCCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHcCCCe-EEEeEEEEECCEEEeEecCccCCcccHHHHHHHHH
Confidence            3678999999999997 569999999999999999999887653 3332221111         11011     1112 2


Q ss_pred             cccCCCCCcEEEEeCCccccccCCCceEEe
Q 044162          216 DLVLGQENSIVIVDDTESVWGGRVENLITV  245 (369)
Q Consensus       216 ~~l~~~~~~vvIvDD~~~~w~~~~~N~I~I  245 (369)
                      +.++-+.+.++.|-|...=.+.-...++.|
T Consensus       258 ~~lgi~~~qtIaVGDg~NDl~m~~~AGlgi  287 (322)
T PRK11133        258 QEYEIPLAQTVAIGDGANDLPMIKAAGLGI  287 (322)
T ss_pred             HHcCCChhhEEEEECCHHHHHHHHHCCCeE
Confidence            345667889999999885554333344444

>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A

Probab=94.41  E-value=0.062  Score=43.88  Aligned_cols=30  Identities=20%  Similarity=0.149  Sum_probs=24.0

Q ss_pred             ccHHHHHHHHhc-CccEEEecCCc----HHHHHHH
Q 044162          157 PFVRSFLEEASR-LFEISVCTLGN----REYATRA  186 (369)
Q Consensus       157 Pgl~eFL~~ls~-~yEi~I~T~g~----~~YA~~i  186 (369)
                      ||+.+||+.+.+ ...+++.|+++    ..|++.+
T Consensus        17 pga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L   51 (101)
T PF13344_consen   17 PGAVEALDALRERGKPVVFLTNNSSRSREEYAKKL   51 (101)
T ss_dssp             TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHH
T ss_pred             cCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHH
Confidence            999999999985 59999999998    4555555

...

>PTZ00445 p36-lilke protein; Provisional

Probab=94.36  E-value=0.047  Score=50.73  Aligned_cols=142  Identities=16%  Similarity=0.116  Sum_probs=82.2

Q ss_pred             ccCHHHHHHHhhhhhhhhhcCCceEEEEeCCCceee--eccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcC
Q 044162           71 RYSIDEISRLKKRNTKNLLRMRKLHLVLDLDHTLLH--SRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGD  148 (369)
Q Consensus        71 ~vs~~~a~~~~~~~~~~ll~~~Kl~LVLDLD~TLIh--s~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~  148 (369)
                      .+|..++.+   .-.+.|.+.+=..+++|||+|||-  |...-.  +.                     +.        .
T Consensus        24 ~~~~~~~~~---~~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~--~~---------------------~~--------~   69 (219)
T PTZ00445         24 HLNPHESAD---KFVDLLNECGIKVIASDFDLTMITKHSGGYID--PD---------------------ND--------D   69 (219)
T ss_pred             cCCHHHHHH---HHHHHHHHcCCeEEEecchhhhhhhhcccccC--CC---------------------cc--------h
Confidence            345555433   334556778889999999999984  433210  00                     00        1


Q ss_pred             ceEEEEeCccHHHHHHHHh-cCccEEEecCCcHHH-----------HHHHHH-HhCCCCC------cc--cceEEeeccc
Q 044162          149 NVLLVKLRPFVRSFLEEAS-RLFEISVCTLGNREY-----------ATRAVK-LLDPDCK------YF--NSRIITREDF  207 (369)
Q Consensus       149 ~~~~vklRPgl~eFL~~ls-~~yEi~I~T~g~~~Y-----------A~~i~~-~lDp~~~------~f--~~Ri~srd~~  207 (369)
                      ..+....+|.+.++++.+. ..+.|+|-|.+.+..           ..++++ .|.-.+-      .+  --|++. +..
T Consensus        70 ~~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk~s~~~~~i~~~~~yyp~~w~-~p~  148 (219)
T PTZ00445         70 IRVLTSVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMVEAALKKSKCDFKIKKVYAYYPKFWQ-EPS  148 (219)
T ss_pred             hhhhccCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHHHHHHHHhcCccceeeeeeeeCCcccC-Chh
Confidence            1345678999999999997 689999999998865           222222 2331211      11  112221 110


Q ss_pred             cC---------ccccc------ccccCCCCCcEEEEeCCccccccCCCceEEeCc
Q 044162          208 KQ---------KERKY------LDLVLGQENSIVIVDDTESVWGGRVENLITVGS  247 (369)
Q Consensus       208 ~~---------~~~Kd------L~~l~~~~~~vvIvDD~~~~w~~~~~N~I~I~~  247 (369)
                      ..         ..+|.      ++..+.+++.++.|||++........-|+..--
T Consensus       149 ~y~~~gl~KPdp~iK~yHle~ll~~~gl~peE~LFIDD~~~NVeaA~~lGi~ai~  203 (219)
T PTZ00445        149 DYRPLGLDAPMPLDKSYHLKQVCSDFNVNPDEILFIDDDMNNCKNALKEGYIALH  203 (219)
T ss_pred             hhhhhcccCCCccchHHHHHHHHHHcCCCHHHeEeecCCHHHHHHHHHCCCEEEE
Confidence            00         11222      234567899999999999877654445555433

>PLN02811 hydrolase

Probab=94.15  E-value=0.036  Score=51.08  Aligned_cols=90  Identities=10%  Similarity=0.055  Sum_probs=60.3

Q ss_pred             EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHH-HHHhCCCCCcccceEEeec--cccC------cccccccccC---
Q 044162          153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRA-VKLLDPDCKYFNSRIITRE--DFKQ------KERKYLDLVL---  219 (369)
Q Consensus       153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i-~~~lDp~~~~f~~Ri~srd--~~~~------~~~KdL~~l~---  219 (369)
                      +.+.||+.++|+.++ ..+.+.|-|++.+.+.... .+..... .+|. .+++.+  ++..      .+.+-++.++   
T Consensus        77 ~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~-~~f~-~i~~~~~~~~~~~KP~p~~~~~a~~~~~~~~  154 (220)
T PLN02811         77 SDLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELF-SLMH-HVVTGDDPEVKQGKPAPDIFLAAARRFEDGP  154 (220)
T ss_pred             CCCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHH-hhCC-EEEECChhhccCCCCCcHHHHHHHHHhCCCC
Confidence            567899999999997 5799999999998766543 3222222 3664 577777  4432      1344455564   


Q ss_pred             CCCCcEEEEeCCccccccCCCceEE
Q 044162          220 GQENSIVIVDDTESVWGGRVENLIT  244 (369)
Q Consensus       220 ~~~~~vvIvDD~~~~w~~~~~N~I~  244 (369)
                      ...+.+|+|+|+..-.......+++
T Consensus       155 ~~~~~~v~IgDs~~di~aA~~aG~~  179 (220)
T PLN02811        155 VDPGKVLVFEDAPSGVEAAKNAGMS  179 (220)
T ss_pred             CCccceEEEeccHhhHHHHHHCCCe
Confidence            6788999999998655443344443

>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase

Probab=94.12  E-value=0.019  Score=50.46  Aligned_cols=73  Identities=11%  Similarity=0.094  Sum_probs=57.9

Q ss_pred             EEEeCccHHHHHHHHhcCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCcE
Q 044162          152 LVKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENSI  225 (369)
Q Consensus       152 ~vklRPgl~eFL~~ls~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~v  225 (369)
                      .+.+.||+.++|+.      +.|.|++.+.++..+++.+.-. .+|. .+++.++....      +.+-+++++.+++.+
T Consensus        88 ~~~~~~g~~~~L~~------~~i~Tn~~~~~~~~~l~~~~l~-~~fd-~v~~~~~~~~~KP~p~~f~~~~~~~~~~p~~~  159 (175)
T TIGR01493        88 NLPPWPDSAAALAR------VAILSNASHWAFDQFAQQAGLP-WYFD-RAFSVDTVRAYKPDPVVYELVFDTVGLPPDRV  159 (175)
T ss_pred             cCCCCCchHHHHHH------HhhhhCCCHHHHHHHHHHCCCH-HHHh-hhccHhhcCCCCCCHHHHHHHHHHHCCCHHHe
Confidence            35689999999993      7899999999999999998765 4785 47777764321      455567778889999


Q ss_pred             EEEeCCc
Q 044162          226 VIVDDTE  232 (369)
Q Consensus       226 vIvDD~~  232 (369)
                      ++|+|++
T Consensus       160 l~vgD~~  166 (175)
T TIGR01493       160 LMVAAHQ  166 (175)
T ss_pred             EeEecCh
Confidence            9999995

The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o

>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544

Probab=94.04  E-value=0.14  Score=49.66  Aligned_cols=95  Identities=14%  Similarity=0.223  Sum_probs=62.8

Q ss_pred             EEEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhC---CCCCcccceEEeec-cccCc--------cccc--c-
Q 044162          152 LVKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLD---PDCKYFNSRIITRE-DFKQK--------ERKY--L-  215 (369)
Q Consensus       152 ~vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lD---p~~~~f~~Ri~srd-~~~~~--------~~Kd--L-  215 (369)
                      -+.+|||+.+||+.+. ....++|+|+|...+++.+++.++   +...++.+++.-.+ .....        .-|.  + 
T Consensus       119 ~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lgl~~~~~~IvSN~L~f~~dGvltG~~~P~i~~~~K~~~v~  198 (277)
T TIGR01544       119 DVMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQAGVYHPNVKVVSNFMDFDEDGVLKGFKGPLIHTFNKNHDVA  198 (277)
T ss_pred             CCccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHcCCCCcCceEEeeeEEECCCCeEeCCCCCcccccccHHHHH
Confidence            4889999999999996 679999999999999999999644   34445555544322 11100        1121  1 


Q ss_pred             ----cccC--CCCCcEEEEeCCcccccc-----CCCceEEeC
Q 044162          216 ----DLVL--GQENSIVIVDDTESVWGG-----RVENLITVG  246 (369)
Q Consensus       216 ----~~l~--~~~~~vvIvDD~~~~w~~-----~~~N~I~I~  246 (369)
                          +.++  .+.+.+|+|.|+..=...     +.+|.|.|-
T Consensus       199 ~~~~~~~~~~~~~~~vI~vGDs~~Dl~ma~g~~~~~~~l~ig  240 (277)
T TIGR01544       199 LRNTEYFNQLKDRSNIILLGDSQGDLRMADGVANVEHILKIG  240 (277)
T ss_pred             HHHHHHhCccCCcceEEEECcChhhhhHhcCCCcccceEEEE
Confidence                1233  467789999998743321     345777774

This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.

>PHA02597 30

Probab=93.99  E-value=0.036  Score=49.90  Aligned_cols=94  Identities=10%  Similarity=0.032  Sum_probs=61.5

Q ss_pred             EEEeCccHHHHHHHHhcCccEEEecCCcHHHHHHHHHHhCCCC---CcccceEEeeccccCc---ccccccccCCCCCcE
Q 044162          152 LVKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDC---KYFNSRIITREDFKQK---ERKYLDLVLGQENSI  225 (369)
Q Consensus       152 ~vklRPgl~eFL~~ls~~yEi~I~T~g~~~YA~~i~~~lDp~~---~~f~~Ri~srd~~~~~---~~KdL~~l~~~~~~v  225 (369)
                      .+++.||+.++|+.|.+.+.+++-|+++......+.+.+...+   .+|. .+++.++....   +.+-++.++  .+.+
T Consensus        72 ~~~~~pG~~e~L~~L~~~~~~~i~Tn~~~~~~~~~~~~~~l~~~f~~~f~-~i~~~~~~~~kp~~~~~a~~~~~--~~~~  148 (197)
T PHA02597         72 YLSAYDDALDVINKLKEDYDFVAVTALGDSIDALLNRQFNLNALFPGAFS-EVLMCGHDESKEKLFIKAKEKYG--DRVV  148 (197)
T ss_pred             hccCCCCHHHHHHHHHhcCCEEEEeCCccchhHHHHhhCCHHHhCCCccc-EEEEeccCcccHHHHHHHHHHhC--CCcE
Confidence            3678999999999999878888888877665555666654332   2453 45555554321   222334445  6779


Q ss_pred             EEEeCCccccccCCCc--eEEeCcc
Q 044162          226 VIVDDTESVWGGRVEN--LITVGSY  248 (369)
Q Consensus       226 vIvDD~~~~w~~~~~N--~I~I~~y  248 (369)
                      |+|||+..-......+  +|++--+
T Consensus       149 v~vgDs~~di~aA~~a~~Gi~~i~~  173 (197)
T PHA02597        149 CFVDDLAHNLDAAHEALSQLPVIHM  173 (197)
T ss_pred             EEeCCCHHHHHHHHHHHcCCcEEEe
Confidence            9999999777655566  6765443

2 hypothetical protein; Provisional

>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional

Probab=93.98  E-value=0.079  Score=47.75  Aligned_cols=73  Identities=10%  Similarity=0.074  Sum_probs=47.6

Q ss_pred             cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCcccccccccCCCCCcEEEEeCCccccccCCCceEEe
Q 044162          168 RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKYLDLVLGQENSIVIVDDTESVWGGRVENLITV  245 (369)
Q Consensus       168 ~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~~~KdL~~l~~~~~~vvIvDD~~~~w~~~~~N~I~I  245 (369)
                      +.+++.|-|+.....+..+++.+.-.. +|..    .++-.....+-++.++.+.+.+++|-|+..=...-...++.+
T Consensus        63 ~Gi~v~I~T~~~~~~v~~~l~~lgl~~-~f~g----~~~k~~~l~~~~~~~gl~~~ev~~VGDs~~D~~~a~~aG~~~  135 (183)
T PRK09484         63 SGIEVAIITGRKSKLVEDRMTTLGITH-LYQG----QSNKLIAFSDLLEKLAIAPEQVAYIGDDLIDWPVMEKVGLSV  135 (183)
T ss_pred             CCCEEEEEeCCCcHHHHHHHHHcCCce-eecC----CCcHHHHHHHHHHHhCCCHHHEEEECCCHHHHHHHHHCCCeE
Confidence            789999999999999999999987653 4531    111111123334556677889999988875443333345544

>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases

Probab=93.75  E-value=0.089  Score=47.23  Aligned_cols=112  Identities=19%  Similarity=0.221  Sum_probs=70.4

Q ss_pred             HHHhhhhhhh--hhcCCceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEe
Q 044162           78 SRLKKRNTKN--LLRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKL  155 (369)
Q Consensus        78 ~~~~~~~~~~--ll~~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vkl  155 (369)
                      ..+...+.+.  |.+.+=..||+|+|+||..-..                                           -.+
T Consensus        24 ~si~~I~~~~~~Lk~~Gik~li~DkDNTL~~~~~-------------------------------------------~~i   60 (168)
T PF09419_consen   24 PSIRDIDFEANHLKKKGIKALIFDKDNTLTPPYE-------------------------------------------DEI   60 (168)
T ss_pred             CChhhCCcchhhhhhcCceEEEEcCCCCCCCCCc-------------------------------------------CcC
Confidence            4455555666  7788889999999999974322                                           112


Q ss_pred             CccHHHHHHHHhcCc-c--EEEecCC-------cHHHHHHHHHHhCCCCCcccceEEeeccccCcccccccccC-----C
Q 044162          156 RPFVRSFLEEASRLF-E--ISVCTLG-------NREYATRAVKLLDPDCKYFNSRIITREDFKQKERKYLDLVL-----G  220 (369)
Q Consensus       156 RPgl~eFL~~ls~~y-E--i~I~T~g-------~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~~~KdL~~l~-----~  220 (369)
                      -|-+.+.++++.+.| +  |.|++++       ...-|+.+.+.|.-.  +|.++.--. .|.   .+-++.+.     .
T Consensus        61 ~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIp--vl~h~~kKP-~~~---~~i~~~~~~~~~~~  134 (168)
T PF09419_consen   61 PPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKALGIP--VLRHRAKKP-GCF---REILKYFKCQKVVT  134 (168)
T ss_pred             CHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhhCCc--EEEeCCCCC-ccH---HHHHHHHhhccCCC
Confidence            366778888888665 3  9999998       367788888888744  232221101 111   11122232     2


Q ss_pred             CCCcEEEEeCCc--cccccC
Q 044162          221 QENSIVIVDDTE--SVWGGR  238 (369)
Q Consensus       221 ~~~~vvIvDD~~--~~w~~~  238 (369)
                      ..+.+++|.|+-  +++..+
T Consensus       135 ~p~eiavIGDrl~TDVl~gN  154 (168)
T PF09419_consen  135 SPSEIAVIGDRLFTDVLMGN  154 (168)
T ss_pred             CchhEEEEcchHHHHHHHhh
Confidence            478999999986  666544

All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.

>PLN03123 poly [ADP-ribose] polymerase; Provisional

Probab=93.73  E-value=0.055  Score=60.67  Aligned_cols=60  Identities=13%  Similarity=0.110  Sum_probs=48.7

Q ss_pred             HHHhhhcCceEEecccCCCCChhHHHHHHhcCCEEEeccCCCceEEEecC---CCcccccccC
Q 044162          310 IRSRILMGCTILFGDDDFEELPLTWSRAEEMGAICTLVTDASVTHVVSSN---TQSETFEWAE  369 (369)
Q Consensus       310 ~r~~VL~g~~ivFSg~~p~~~p~lw~la~~~GA~v~~~i~~~vTHvVa~~---~gT~K~~~a~  369 (369)
                      ...+.|+|++|+++|-++...+.+.++.+.+||+++..+++.+||+|+..   ....|+++|+
T Consensus       389 ~~~~~l~~~~i~i~G~~~~~~~~~k~~Ie~~GG~~s~~v~~~~t~l~tt~e~~k~~~kv~qAk  451 (981)
T PLN03123        389 SESEFLGDLKVSIVGASKEKVTEWKAKIEEAGGVFHATVKKDTNCLVVCGELDDEDAEMRKAR  451 (981)
T ss_pred             ccCCCcCCeEEEEecCCCCcHHHHHHHHHhcCCEEeeeccCCceEEEccHHhhhcchHHHHHH
Confidence            44678999999999998765556667899999999999999999999974   3445666663

>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]

Probab=93.61  E-value=0.17  Score=47.44  Aligned_cols=98  Identities=11%  Similarity=0.050  Sum_probs=70.9

Q ss_pred             eEEEEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhC-CCCCcccceEEeeccc--c------CcccccccccC
Q 044162          150 VLLVKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLD-PDCKYFNSRIITREDF--K------QKERKYLDLVL  219 (369)
Q Consensus       150 ~~~vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lD-p~~~~f~~Ri~srd~~--~------~~~~KdL~~l~  219 (369)
                      ....++-||+.++++.|. ..-.+.++|.+++..++..++.+. +- ..|++-++ -++-  .      ..|.+-.++++
T Consensus        88 ~~~~~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~~~~~-~~f~~~v~-~d~~~v~~gKP~Pdi~l~A~~~l~  165 (222)
T KOG2914|consen   88 FMNSILMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRHEDIF-KNFSHVVL-GDDPEVKNGKPDPDIYLKAAKRLG  165 (222)
T ss_pred             ccccccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHhhHHH-HhcCCCee-cCCccccCCCCCchHHHHHHHhcC
Confidence            556888899999999997 678899999999888888777654 44 45765555 2221  1      12567778888


Q ss_pred             CCC-CcEEEEeCCcccccc---CCCceEEeCccc
Q 044162          220 GQE-NSIVIVDDTESVWGG---RVENLITVGSYD  249 (369)
Q Consensus       220 ~~~-~~vvIvDD~~~~w~~---~~~N~I~I~~y~  249 (369)
                      .+. +.+++++|++.-...   .--++|-|..+.
T Consensus       166 ~~~~~k~lVfeds~~Gv~aa~aagm~vi~v~~~~  199 (222)
T KOG2914|consen  166 VPPPSKCLVFEDSPVGVQAAKAAGMQVVGVATPD  199 (222)
T ss_pred             CCCccceEEECCCHHHHHHHHhcCCeEEEecCCC
Confidence            777 999999999976643   234567776643

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=93.50  E-value=0.085  Score=60.03  Aligned_cols=82  Identities=10%  Similarity=0.115  Sum_probs=65.6

Q ss_pred             eCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccC------cccccccccCCCCCcEEE
Q 044162          155 LRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQ------KERKYLDLVLGQENSIVI  227 (369)
Q Consensus       155 lRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~------~~~KdL~~l~~~~~~vvI  227 (369)
                      +-||+.++|++|. +.|.+.|.|++.+.+++.+++.++-...+|. .+++.++...      .+.+-+++++.+.+.+|+
T Consensus       162 ~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~gl~~~~Fd-~iv~~~~~~~~KP~Pe~~~~a~~~lgv~p~e~v~  240 (1057)
T PLN02919        162 GFPGALELITQCKNKGLKVAVASSADRIKVDANLAAAGLPLSMFD-AIVSADAFENLKPAPDIFLAAAKILGVPTSECVV  240 (1057)
T ss_pred             cCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHcCCChhHCC-EEEECcccccCCCCHHHHHHHHHHcCcCcccEEE
Confidence            5799999999996 6799999999999999999998876545774 5777776553      145556677888899999


Q ss_pred             EeCCcccccc
Q 044162          228 VDDTESVWGG  237 (369)
Q Consensus       228 vDD~~~~w~~  237 (369)
                      |+|++.-...
T Consensus       241 IgDs~~Di~A  250 (1057)
T PLN02919        241 IEDALAGVQA  250 (1057)
T ss_pred             EcCCHHHHHH
Confidence            9999865543

>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated

Probab=93.01  E-value=0.1  Score=53.76  Aligned_cols=89  Identities=18%  Similarity=0.179  Sum_probs=64.2

Q ss_pred             EEEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccC-----cccccccccCCCCCcE
Q 044162          152 LVKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQ-----KERKYLDLVLGQENSI  225 (369)
Q Consensus       152 ~vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~-----~~~KdL~~l~~~~~~v  225 (369)
                      .+++.||+.++|+.+. +.+.+.|.|++.+.++..+++.++-.. ||. .+++.++...     .+.+-++.+  +++.+
T Consensus       328 ~~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~~l~~-~f~-~i~~~d~v~~~~kP~~~~~al~~l--~~~~~  403 (459)
T PRK06698        328 KGALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYYDLDQ-WVT-ETFSIEQINSLNKSDLVKSILNKY--DIKEA  403 (459)
T ss_pred             CCCcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHCCcHh-hcc-eeEecCCCCCCCCcHHHHHHHHhc--CcceE
Confidence            3678999999999996 679999999999999999999988764 784 4776665421     122223333  35789


Q ss_pred             EEEeCCccccccCCCceEE
Q 044162          226 VIVDDTESVWGGRVENLIT  244 (369)
Q Consensus       226 vIvDD~~~~w~~~~~N~I~  244 (369)
                      ++|.|++.-.......++.
T Consensus       404 v~VGDs~~Di~aAk~AG~~  422 (459)
T PRK06698        404 AVVGDRLSDINAAKDNGLI  422 (459)
T ss_pred             EEEeCCHHHHHHHHHCCCe
Confidence            9999998555433444543

>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []

Probab=92.70  E-value=0.24  Score=45.14  Aligned_cols=37  Identities=22%  Similarity=0.169  Sum_probs=29.1

Q ss_pred             ccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCC
Q 044162          157 PFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPD  193 (369)
Q Consensus       157 Pgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~  193 (369)
                      |...+.|+++. +...++|.|.-+...+..+++.+.-.
T Consensus        18 ~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~~~~~~   55 (254)
T PF08282_consen   18 PETIEALKELQEKGIKLVIATGRSYSSIKRLLKELGID   55 (254)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHHHTTHC
T ss_pred             HHHHHHHHhhcccceEEEEEccCcccccccccccccch
Confidence            45566777776 88899999999999999999876644

This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....

>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []

Probab=92.64  E-value=0.15  Score=48.10  Aligned_cols=49  Identities=16%  Similarity=0.253  Sum_probs=42.3

Q ss_pred             EEeCccHHHHHHHHh---cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEe
Q 044162          153 VKLRPFVRSFLEEAS---RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIIT  203 (369)
Q Consensus       153 vklRPgl~eFL~~ls---~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~s  203 (369)
                      +.+-||..+|++.++   ..++++|-|.|..-|.+.|++.-+-.. +|. .|+|
T Consensus        70 ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~gl~~-~f~-~I~T  121 (234)
T PF06888_consen   70 IPIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEHHGLRD-CFS-EIFT  121 (234)
T ss_pred             CCCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHhCCCcc-ccc-eEEe
Confidence            677899999999994   489999999999999999999888764 674 4775

It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity

>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed

Probab=92.52  E-value=0.3  Score=46.56  Aligned_cols=37  Identities=14%  Similarity=0.063  Sum_probs=30.6

Q ss_pred             ccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCC
Q 044162          157 PFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPD  193 (369)
Q Consensus       157 Pgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~  193 (369)
                      |...+.|+.+. +.+.++|.|.-....+..+++.++..
T Consensus        24 ~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~~~l~l~   61 (273)
T PRK00192         24 EPAKPALKALKEKGIPVIPCTSKTAAEVEVLRKELGLE   61 (273)
T ss_pred             HHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC
Confidence            55777888887 46899999999999999999988755

>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase

Probab=92.47  E-value=0.28  Score=45.77  Aligned_cols=37  Identities=22%  Similarity=0.077  Sum_probs=27.0

Q ss_pred             ccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCC
Q 044162          157 PFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPD  193 (369)
Q Consensus       157 Pgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~  193 (369)
                      |...++|+++. +...+++.|.-++..+..+++.++..
T Consensus        18 ~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~lg~~   55 (225)
T TIGR02461        18 GPAREALEELKDLGFPIVFVSSKTRAEQEYYREELGVE   55 (225)
T ss_pred             hHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCC
Confidence            34567777776 45888888888888777888777643

Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.

>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5

Probab=91.99  E-value=0.32  Score=47.86  Aligned_cols=34  Identities=24%  Similarity=0.152  Sum_probs=22.2

Q ss_pred             ccHHHHHHHHhc-----CccEEEecCCc----HHHHHHHHHHh
Q 044162          157 PFVRSFLEEASR-----LFEISVCTLGN----REYATRAVKLL  190 (369)
Q Consensus       157 Pgl~eFL~~ls~-----~yEi~I~T~g~----~~YA~~i~~~l  190 (369)
                      ||+.++|+.+..     ...+.++|+.+    +.+|+.+.+.+
T Consensus        19 ~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~l   61 (321)
T TIGR01456        19 AGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLL   61 (321)
T ss_pred             HHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHc
Confidence            677777777765     66777777664    55666664444

The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.

>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein

Probab=91.85  E-value=0.41  Score=43.83  Aligned_cols=35  Identities=14%  Similarity=0.123  Sum_probs=28.5

Q ss_pred             HHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCC
Q 044162          159 VRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPD  193 (369)
Q Consensus       159 l~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~  193 (369)
                      ..+.|+.+. +...++|.|.-+...+..+++.+...
T Consensus        21 ~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~~   56 (221)
T TIGR02463        21 AAPWLTRLQEAGIPVILCTSKTAAEVEYLQKALGLT   56 (221)
T ss_pred             HHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence            566777776 56899999999999999999988754

This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.

>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed

Probab=91.77  E-value=0.49  Score=45.06  Aligned_cols=33  Identities=9%  Similarity=0.120  Sum_probs=21.6

Q ss_pred             HHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCC
Q 044162          161 SFLEEAS-RLFEISVCTLGNREYATRAVKLLDPD  193 (369)
Q Consensus       161 eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~  193 (369)
                      +-|+++. +...++|.|.-+...+..+++.|+.+
T Consensus        31 ~ai~~l~~~Gi~~viaTGR~~~~i~~~~~~l~~~   64 (271)
T PRK03669         31 PWLTRLREAQVPVILCSSKTAAEMLPLQQTLGLQ   64 (271)
T ss_pred             HHHHHHHHcCCeEEEEcCCCHHHHHHHHHHhCCC
Confidence            3344544 45677777777777777777777654

>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]

Probab=91.60  E-value=0.42  Score=45.03  Aligned_cols=59  Identities=22%  Similarity=0.163  Sum_probs=48.5

Q ss_pred             CceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHHHHHHH-hcCc
Q 044162           92 RKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEA-SRLF  170 (369)
Q Consensus        92 ~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~eFL~~l-s~~y  170 (369)
                      ....+++||||||+.....                                            ..|...+-|+++ ++..
T Consensus         2 ~~kli~~DlDGTLl~~~~~--------------------------------------------i~~~~~~al~~~~~~g~   37 (264)
T COG0561           2 MIKLLAFDLDGTLLDSNKT--------------------------------------------ISPETKEALARLREKGV   37 (264)
T ss_pred             CeeEEEEcCCCCccCCCCc--------------------------------------------cCHHHHHHHHHHHHCCC
Confidence            3567899999999986531                                            346677778877 5889


Q ss_pred             cEEEecCCcHHHHHHHHHHhCCCC
Q 044162          171 EISVCTLGNREYATRAVKLLDPDC  194 (369)
Q Consensus       171 Ei~I~T~g~~~YA~~i~~~lDp~~  194 (369)
                      .++|-|--+...+..+++.|..++
T Consensus        38 ~v~iaTGR~~~~~~~~~~~l~~~~   61 (264)
T COG0561          38 KVVLATGRPLPDVLSILEELGLDG   61 (264)
T ss_pred             EEEEECCCChHHHHHHHHHcCCCc
Confidence            999999999999999999998886

>PLN02645 phosphoglycolate phosphatase

Probab=91.11  E-value=0.31  Score=47.70  Aligned_cols=33  Identities=12%  Similarity=-0.110  Sum_probs=24.1

Q ss_pred             ccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHH
Q 044162          157 PFVRSFLEEAS-RLFEISVCTLGNREYATRAVKL  189 (369)
Q Consensus       157 Pgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~  189 (369)
                      ||..++|+.+. +...+++-|+.+..-...+++.
T Consensus        47 ~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~   80 (311)
T PLN02645         47 EGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKK   80 (311)
T ss_pred             cCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHH
Confidence            88889998886 6888999998774444444433

>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily

Probab=90.64  E-value=0.58  Score=43.91  Aligned_cols=38  Identities=16%  Similarity=0.133  Sum_probs=28.7

Q ss_pred             ccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCC
Q 044162          157 PFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDC  194 (369)
Q Consensus       157 Pgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~  194 (369)
                      |...+.|+++. +...++|-|.-+...+..+++.++.+.
T Consensus        19 ~~~~~~i~~l~~~G~~~~iaTGR~~~~~~~~~~~~~~~~   57 (256)
T TIGR00099        19 PSTKEALAKLREKGIKVVLATGRPYKEVKNILKELGLDT   57 (256)
T ss_pred             HHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCCC
Confidence            44556666666 568899999999888888888877653

The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.

>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein

Probab=90.33  E-value=0.5  Score=43.44  Aligned_cols=50  Identities=10%  Similarity=0.091  Sum_probs=43.8

Q ss_pred             EEeCccHHHHHHHHhcCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEe
Q 044162          153 VKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIIT  203 (369)
Q Consensus       153 vklRPgl~eFL~~ls~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~s  203 (369)
                      +.++||+.+||+.+.+.+.++|-|++...+++++++.++-+ .+|.+++..
T Consensus        67 i~l~pga~ell~~lk~~~~~~IVS~~~~~~~~~il~~lgi~-~~~an~l~~  116 (203)
T TIGR02137        67 LKPLEGAVEFVDWLRERFQVVILSDTFYEFSQPLMRQLGFP-TLLCHKLEI  116 (203)
T ss_pred             CCCCccHHHHHHHHHhCCeEEEEeCChHHHHHHHHHHcCCc-hhhceeeEE
Confidence            56899999999999877899999999999999999999877 477766553

This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).

>TIGR01675 plant-AP plant acid phosphatase

Probab=90.12  E-value=1.6  Score=41.10  Aligned_cols=130  Identities=12%  Similarity=-0.107  Sum_probs=70.6

Q ss_pred             hhcCCceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHHHHHHHh
Q 044162           88 LLRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEAS  167 (369)
Q Consensus        88 ll~~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~eFL~~ls  167 (369)
                      +-..+|..+|||+|+|++.....         ..........|....   ......      .---..-|++.+|++.+.
T Consensus        72 ~~~dg~~A~V~DIDET~LsN~py---------~~~~~~g~~~~~~~~---~~~wv~------~~~apaip~al~l~~~l~  133 (229)
T TIGR01675        72 LSGDGMDAWIFDVDDTLLSNIPY---------YKKHGYGTEKTDPTA---FWLWLG------KGAAPALPEGLKLYQKII  133 (229)
T ss_pred             ccCCCCcEEEEccccccccCHHH---------HHHhccCCCcCCHHH---HHHHHH------cCCCCCCHHHHHHHHHHH
Confidence            34579999999999999976632         111111011110000   000000      001234599999999985


Q ss_pred             -cCccEEEecCCcHHHHHHHHHHhCCCCCc-ccceEEeeccccCc----ccccccc---cCCCCCcEEEEeCCccccc
Q 044162          168 -RLFEISVCTLGNREYATRAVKLLDPDCKY-FNSRIITREDFKQK----ERKYLDL---VLGQENSIVIVDDTESVWG  236 (369)
Q Consensus       168 -~~yEi~I~T~g~~~YA~~i~~~lDp~~~~-f~~Ri~srd~~~~~----~~KdL~~---l~~~~~~vvIvDD~~~~w~  236 (369)
                       ..++|++.|.-+........+.|--.|-- + .+++=|......    ..|.-.+   ....-.-+..|+|...-+.
T Consensus       134 ~~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~~~-~~LiLR~~~d~~~~~~~yKs~~R~~l~~~GYrIv~~iGDq~sDl~  210 (229)
T TIGR01675       134 ELGIKIFLLSGRWEELRNATLDNLINAGFTGW-KHLILRGLEDSNKTVVTYKSEVRKSLMEEGYRIWGNIGDQWSDLL  210 (229)
T ss_pred             HCCCEEEEEcCCChHHHHHHHHHHHHcCCCCc-CeeeecCCCCCCchHhHHHHHHHHHHHhCCceEEEEECCChHHhc
Confidence             79999999998887766666665444411 1 455556421110    1133222   2234556678888765553

This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.

>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal

Probab=90.11  E-value=0.7  Score=42.19  Aligned_cols=38  Identities=13%  Similarity=0.096  Sum_probs=29.0

Q ss_pred             ccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCC
Q 044162          157 PFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDC  194 (369)
Q Consensus       157 Pgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~  194 (369)
                      |...+-|+++. +.+.++|.|.-+...+..+++.|+.++
T Consensus        21 ~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~~~l~~~~   59 (215)
T TIGR01487        21 ERAIEAIRKAEKKGIPVSLVTGNTVPFARALAVLIGTSG   59 (215)
T ss_pred             HHHHHHHHHHHHCCCEEEEEcCCcchhHHHHHHHhCCCC
Confidence            44555566665 568889999988888889988888764

TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.

>smart00775 LNS2 LNS2 domain

Probab=90.01  E-value=0.67  Score=40.87  Aligned_cols=30  Identities=17%  Similarity=0.085  Sum_probs=24.3

Q ss_pred             eCccHHHHHHHHh-cCccEEEecCCcHHHHH
Q 044162          155 LRPFVRSFLEEAS-RLFEISVCTLGNREYAT  184 (369)
Q Consensus       155 lRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~  184 (369)
                      ..|++.++++.+. +.|.+++.|.-....+.
T Consensus        28 ~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~   58 (157)
T smart00775       28 THPGVAKLYRDIQNNGYKILYLTARPIGQAD   58 (157)
T ss_pred             CCHHHHHHHHHHHHcCCeEEEEcCCcHHHHH
Confidence            3699999999997 67888888887766664

This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.

>PRK10513 sugar phosphate phosphatase; Provisional

Probab=89.87  E-value=0.81  Score=43.14  Aligned_cols=65  Identities=15%  Similarity=0.031  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHhhhcCceEEecc-----cCCCCCh---hHHHHHHhcCCEEEecc------C-----CCceEEEecCCCcc
Q 044162          303 VRSCLAKIRSRILMGCTILFGD-----DDFEELP---LTWSRAEEMGAICTLVT------D-----ASVTHVVSSNTQSE  363 (369)
Q Consensus       303 Vr~il~~~r~~VL~g~~ivFSg-----~~p~~~p---~lw~la~~~GA~v~~~i------~-----~~vTHvVa~~~gT~  363 (369)
                      +..+..++....-.++.++.|+     +.|.+..   .+..|++.+|-....-+      +     ..+-|-||..++++
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~s~~~~~eI~~~gvsKg~al~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag~~vAm~NA~~  242 (270)
T PRK10513        163 LDAAIARIPAEVKERYTVLKSAPYFLEILDKRVNKGTGVKSLAEHLGIKPEEVMAIGDQENDIAMIEYAGVGVAMGNAIP  242 (270)
T ss_pred             HHHHHHHhHHHhcCcEEEEEecCeeEEEeCCCCChHHHHHHHHHHhCCCHHHEEEECCchhhHHHHHhCCceEEecCccH
Confidence            3344444544433456666665     4455432   88889999995421111      1     24667788888877


Q ss_pred             cccc
Q 044162          364 TFEW  367 (369)
Q Consensus       364 K~~~  367 (369)
                      .++.
T Consensus       243 ~vK~  246 (270)
T PRK10513        243 SVKE  246 (270)
T ss_pred             HHHH
Confidence            7664

>PRK10444 UMP phosphatase; Provisional

Probab=89.44  E-value=0.58  Score=44.38  Aligned_cols=14  Identities=29%  Similarity=0.691  Sum_probs=12.0

Q ss_pred             EEEEeCCCceeeec
Q 044162           95 HLVLDLDHTLLHSR  108 (369)
Q Consensus        95 ~LVLDLD~TLIhs~  108 (369)
                      .+++||||||++..
T Consensus         3 ~v~~DlDGtL~~~~   16 (248)
T PRK10444          3 NVICDIDGVLMHDN   16 (248)
T ss_pred             EEEEeCCCceEeCC
Confidence            57899999999864

>COG2503 Predicted secreted acid phosphatase [General function prediction only]

Probab=89.25  E-value=0.37  Score=45.70  Aligned_cols=79  Identities=20%  Similarity=0.145  Sum_probs=42.6

Q ss_pred             hhhhhhhcCCceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHHH
Q 044162           83 RNTKNLLRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSF  162 (369)
Q Consensus        83 ~~~~~ll~~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~eF  162 (369)
                      .+.-..-+.++..+|||||||+++.+...      .|   ++..-..|.+++      .-++.   ..---+.=||+.||
T Consensus        69 d~~~k~~k~K~~aVvlDlDETvLdNs~Yq------gy---~v~nnk~f~pe~------Wd~wV---~a~~sk~vpGA~eF  130 (274)
T COG2503          69 DTQAKKKKGKKKAVVLDLDETVLDNSAYQ------GY---QVLNNKGFTPET------WDKWV---QAKKSKAVPGAVEF  130 (274)
T ss_pred             HhhhccccCCCceEEEecchHhhcCcccc------ch---hhhcCCCCCccc------hHHHH---hhcccccCccHHHH
Confidence            33444566788899999999999876432      12   111112232221      00000   01124556999999


Q ss_pred             HHHHhc-CccEEEecCCc
Q 044162          163 LEEASR-LFEISVCTLGN  179 (369)
Q Consensus       163 L~~ls~-~yEi~I~T~g~  179 (369)
                      |+.+.+ .-.|+--|+-+
T Consensus       131 l~Yvn~~Gg~ifyiSNR~  148 (274)
T COG2503         131 LNYVNSNGGKIFYISNRD  148 (274)
T ss_pred             HHHHHhcCcEEEEEeccc
Confidence            999864 33444334333

>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like

Probab=89.06  E-value=0.8  Score=39.94  Aligned_cols=49  Identities=22%  Similarity=0.288  Sum_probs=41.4

Q ss_pred             EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEE
Q 044162          153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRII  202 (369)
Q Consensus       153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~  202 (369)
                      +.++||+.++|+.+. ..+.++|.|++.+.|++.+++.++-. .+|+.++.
T Consensus        72 ~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~-~~~~~~~~  121 (177)
T TIGR01488        72 VALRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGID-DVFANRLE  121 (177)
T ss_pred             CCcCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCc-hheeeeEE
Confidence            567999999999996 67899999999999999999998765 46665544

Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.

>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB

Probab=88.89  E-value=0.89  Score=40.98  Aligned_cols=35  Identities=17%  Similarity=0.088  Sum_probs=28.4

Q ss_pred             CccHHHHHHHHhcC-ccEEEecCCcHHHHHHHHHHh
Q 044162          156 RPFVRSFLEEASRL-FEISVCTLGNREYATRAVKLL  190 (369)
Q Consensus       156 RPgl~eFL~~ls~~-yEi~I~T~g~~~YA~~i~~~l  190 (369)
                      .|.+.+.|+++.+. ..++|-|..+..++..+++.+
T Consensus        19 ~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~~   54 (204)
T TIGR01484        19 SPETIEALERLREAGVKVVLVTGRSLAEIKELLKQL   54 (204)
T ss_pred             CHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHhC
Confidence            36777888888754 789999999999999988874

The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.

>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=88.86  E-value=0.79  Score=47.46  Aligned_cols=124  Identities=22%  Similarity=0.278  Sum_probs=70.7

Q ss_pred             hhhhcCCceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEc----CceEEEEeCccHHH
Q 044162           86 KNLLRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIG----DNVLLVKLRPFVRS  161 (369)
Q Consensus        86 ~~ll~~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~----~~~~~vklRPgl~e  161 (369)
                      ..+-+..|.+||||||+||.--..-..                           .+-.+++.    |..++     -+++
T Consensus       215 ~A~~g~~kK~LVLDLDNTLWGGVIGed---------------------------Gv~GI~Ls~~~~G~~fk-----~fQ~  262 (574)
T COG3882         215 AAMSGKSKKALVLDLDNTLWGGVIGED---------------------------GVDGIRLSNSAEGEAFK-----TFQN  262 (574)
T ss_pred             HHhhCcccceEEEecCCcccccccccc---------------------------cccceeecCCCCchhHH-----HHHH
Confidence            344678999999999999986543210                           01011111    11111     1355


Q ss_pred             HHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccC------c----ccccccccCCCCCcEEEEeC
Q 044162          162 FLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQ------K----ERKYLDLVLGQENSIVIVDD  230 (369)
Q Consensus       162 FL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~------~----~~KdL~~l~~~~~~vvIvDD  230 (369)
                      |...+. +.+=+.|.+-.+..=|..+... -|      +-|+.-++...      .    -.|-.+.|+-+.+..|.+||
T Consensus       263 ~Ik~l~kqGVlLav~SKN~~~da~evF~k-hp------~MiLkeedfa~~~iNW~~K~eNirkIAkklNlg~dSmvFiDD  335 (574)
T COG3882         263 FIKGLKKQGVLLAVCSKNTEKDAKEVFRK-HP------DMILKEEDFAVFQINWDPKAENIRKIAKKLNLGLDSMVFIDD  335 (574)
T ss_pred             HHHHHHhccEEEEEecCCchhhHHHHHhh-CC------CeEeeHhhhhhheecCCcchhhHHHHHHHhCCCccceEEecC
Confidence            666665 5667889998888888887743 12      22553333211      1    12333457788999999999


Q ss_pred             CccccccCCCce-EEeCcc
Q 044162          231 TESVWGGRVENL-ITVGSY  248 (369)
Q Consensus       231 ~~~~w~~~~~N~-I~I~~y  248 (369)
                      +|---..-+.++ |.|.+|
T Consensus       336 ~p~ErE~vk~~~~v~Vi~~  354 (574)
T COG3882         336 NPAERELVKRELPVSVIEF  354 (574)
T ss_pred             CHHHHHHHHhcCceeeccC
Confidence            985543222222 566665

>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional

Probab=88.53  E-value=1.3  Score=41.53  Aligned_cols=34  Identities=15%  Similarity=0.056  Sum_probs=19.7

Q ss_pred             HHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCC
Q 044162          161 SFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDC  194 (369)
Q Consensus       161 eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~  194 (369)
                      +-|+++. +...++|-|.-....+..+++.++.++
T Consensus        27 ~ai~~~~~~G~~~~iaTGR~~~~~~~~~~~l~~~~   61 (272)
T PRK10530         27 EALARAREAGYKVIIVTGRHHVAIHPFYQALALDT   61 (272)
T ss_pred             HHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCCC
Confidence            3344443 456666666666666666666666543

>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458

Probab=88.48  E-value=0.69  Score=43.96  Aligned_cols=25  Identities=12%  Similarity=0.130  Sum_probs=19.5

Q ss_pred             ccHHHHHHHHh-cCccEEEecCCcHH
Q 044162          157 PFVRSFLEEAS-RLFEISVCTLGNRE  181 (369)
Q Consensus       157 Pgl~eFL~~ls-~~yEi~I~T~g~~~  181 (369)
                      ||..++|+.+. +...+++.|+.+..
T Consensus        24 ~~a~~al~~l~~~G~~~~~~Tn~~~~   49 (257)
T TIGR01458        24 PGSQEAVKRLRGASVKVRFVTNTTKE   49 (257)
T ss_pred             CCHHHHHHHHHHCCCeEEEEECCCCC
Confidence            78888998887 56888888875543

This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.

>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family

Probab=88.08  E-value=1.1  Score=42.15  Aligned_cols=35  Identities=17%  Similarity=0.111  Sum_probs=27.1

Q ss_pred             HHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCC
Q 044162          159 VRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPD  193 (369)
Q Consensus       159 l~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~  193 (369)
                      ..++++.+. +...++|.|.-+...+..+++.++..
T Consensus        21 ~~~~i~~l~~~g~~~~~~TgR~~~~~~~~~~~~~~~   56 (256)
T TIGR01486        21 AKEVLERLQELGIPVIPCTSKTAAEVEYLRKELGLE   56 (256)
T ss_pred             HHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence            567777776 45888899988888888888888743

This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta

>PRK10748 flavin mononucleotide phosphatase; Provisional

Probab=87.79  E-value=0.65  Score=43.35  Aligned_cols=85  Identities=14%  Similarity=0.176  Sum_probs=57.7

Q ss_pred             EEeCccHHHHHHHHhcCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccC------cccccccccCCCCCcEE
Q 044162          153 VKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQ------KERKYLDLVLGQENSIV  226 (369)
Q Consensus       153 vklRPgl~eFL~~ls~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~------~~~KdL~~l~~~~~~vv  226 (369)
                      +..-||+.++|+.+.+.|.+.|.|+|+..     ++..+-. .+|. .+++.++...      .+.+-++.++.+.+.++
T Consensus       112 ~~~~~gv~~~L~~L~~~~~l~i~Tn~~~~-----~~~~gl~-~~fd-~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~~  184 (238)
T PRK10748        112 IDVPQATHDTLKQLAKKWPLVAITNGNAQ-----PELFGLG-DYFE-FVLRAGPHGRSKPFSDMYHLAAEKLNVPIGEIL  184 (238)
T ss_pred             CCCCccHHHHHHHHHcCCCEEEEECCCch-----HHHCCcH-Hhhc-eeEecccCCcCCCcHHHHHHHHHHcCCChhHEE
Confidence            55669999999999988999999999875     2444433 4674 4665554432      13444566777889999


Q ss_pred             EEeCCc--cccccCCCceEEe
Q 044162          227 IVDDTE--SVWGGRVENLITV  245 (369)
Q Consensus       227 IvDD~~--~~w~~~~~N~I~I  245 (369)
                      +|.|++  ++-.. ..+|+..
T Consensus       185 ~VGD~~~~Di~~A-~~aG~~~  204 (238)
T PRK10748        185 HVGDDLTTDVAGA-IRCGMQA  204 (238)
T ss_pred             EEcCCcHHHHHHH-HHCCCeE
Confidence            998874  55543 3455543

>PRK01158 phosphoglycolate phosphatase; Provisional

Probab=87.74  E-value=1.4  Score=40.31  Aligned_cols=38  Identities=16%  Similarity=0.037  Sum_probs=25.4

Q ss_pred             ccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCC
Q 044162          157 PFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDC  194 (369)
Q Consensus       157 Pgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~  194 (369)
                      |...+-|+++. +...++|-|.-+...+..+++.+..++
T Consensus        23 ~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~   61 (230)
T PRK01158         23 LKAVEAIRKAEKLGIPVILATGNVLCFARAAAKLIGTSG   61 (230)
T ss_pred             HHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCCC
Confidence            34445555555 456777888777777778887777654

>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]

Probab=87.37  E-value=1.4  Score=40.01  Aligned_cols=101  Identities=11%  Similarity=0.009  Sum_probs=61.2

Q ss_pred             EEeCccHHHHHHHHh-cCccEEEecCCc------------HHHHHHHHHHhCCCCCcccceEEeecc----ccCc-----
Q 044162          153 VKLRPFVRSFLEEAS-RLFEISVCTLGN------------REYATRAVKLLDPDCKYFNSRIITRED----FKQK-----  210 (369)
Q Consensus       153 vklRPgl~eFL~~ls-~~yEi~I~T~g~------------~~YA~~i~~~lDp~~~~f~~Ri~srd~----~~~~-----  210 (369)
                      ..+.||+.+=|..+. ..|-++|+|+-+            ..+-..+.+.|--.|.-|...++.+..    |..+     
T Consensus        30 ~~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l~~~gv~id~i~~Cph~p~~~c~cRKP~~g  109 (181)
T COG0241          30 FQFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKILASQGVKIDGILYCPHHPEDNCDCRKPKPG  109 (181)
T ss_pred             hccCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHHHHcCCccceEEECCCCCCCCCcccCCChH
Confidence            345699999999995 789999999932            223334566666666567665654332    3332     


Q ss_pred             -ccccccccCCCCCcEEEEeCCccccccCCCceEEeCccccccccc
Q 044162          211 -ERKYLDLVLGQENSIVIVDDTESVWGGRVENLITVGSYDFFKDKK  255 (369)
Q Consensus       211 -~~KdL~~l~~~~~~vvIvDD~~~~w~~~~~N~I~I~~y~fF~~~~  255 (369)
                       ...-++....|++..++|=|+..=-......+|.  |+.|..+.+
T Consensus       110 m~~~~~~~~~iD~~~s~~VGD~~~Dlq~a~n~gi~--~~~~~~~~~  153 (181)
T COG0241         110 MLLSALKEYNIDLSRSYVVGDRLTDLQAAENAGIK--GVLVLTGIG  153 (181)
T ss_pred             HHHHHHHHhCCCccceEEecCcHHHHHHHHHCCCC--ceEEEcCcc
Confidence             1222344567899999999996433322233444  666555544

>PLN02887 hydrolase family protein

Probab=87.23  E-value=1.2  Score=47.59  Aligned_cols=77  Identities=21%  Similarity=0.250  Sum_probs=48.7

Q ss_pred             CHHHHHHHhhhhhhhhhcCCceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEE
Q 044162           73 SIDEISRLKKRNTKNLLRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLL  152 (369)
Q Consensus        73 s~~~a~~~~~~~~~~ll~~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~  152 (369)
                      |.+.....++....|.++.+...+++||||||+++..  .++                                      
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~iKLIa~DLDGTLLn~d~--~Is--------------------------------------  327 (580)
T PLN02887        288 QLEKSDDRKKEGSLRFYKPKFSYIFCDMDGTLLNSKS--QIS--------------------------------------  327 (580)
T ss_pred             ccccccchhhhcchhhhccCccEEEEeCCCCCCCCCC--ccC--------------------------------------
Confidence            3333344455556677777888999999999997643  222                                      


Q ss_pred             EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCC
Q 044162          153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPD  193 (369)
Q Consensus       153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~  193 (369)
                          |...+-|+++. +...++|.|--...-+..+++.++.+
T Consensus       328 ----~~t~eAI~kl~ekGi~~vIATGR~~~~i~~~l~~L~l~  365 (580)
T PLN02887        328 ----ETNAKALKEALSRGVKVVIATGKARPAVIDILKMVDLA  365 (580)
T ss_pred             ----HHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHhCcc
Confidence                22233444444 56777777777777777777776643

>PRK10187 trehalose-6-phosphate phosphatase; Provisional

Probab=87.12  E-value=1  Score=43.07  Aligned_cols=60  Identities=13%  Similarity=-0.033  Sum_probs=39.9

Q ss_pred             CceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHHHHHHHhc--C
Q 044162           92 RKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEASR--L  169 (369)
Q Consensus        92 ~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~eFL~~ls~--~  169 (369)
                      +++.+++|+||||+.....|.-                                       ..+-|.+.+-|+.+++  .
T Consensus        13 ~~~li~~D~DGTLl~~~~~p~~---------------------------------------~~i~~~~~~~L~~L~~~~g   53 (266)
T PRK10187         13 ANYAWFFDLDGTLAEIKPHPDQ---------------------------------------VVVPDNILQGLQLLATAND   53 (266)
T ss_pred             CCEEEEEecCCCCCCCCCCccc---------------------------------------ccCCHHHHHHHHHHHhCCC
Confidence            3689999999999986544320                                       1123777777888875  4


Q ss_pred             ccEEEecCCcHHHHHHHHHHh
Q 044162          170 FEISVCTLGNREYATRAVKLL  190 (369)
Q Consensus       170 yEi~I~T~g~~~YA~~i~~~l  190 (369)
                      ..++|-|--...-+..+++.+
T Consensus        54 ~~v~i~SGR~~~~~~~~~~~~   74 (266)
T PRK10187         54 GALALISGRSMVELDALAKPY   74 (266)
T ss_pred             CcEEEEeCCCHHHHHHhcCcc
Confidence            667777766666666655433

>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional

Probab=86.83  E-value=1.6  Score=41.40  Aligned_cols=66  Identities=6%  Similarity=-0.088  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHhhhcCceEEecc-----cCCCCCh---hHHHHHHhcCCEEEec--c----C-----CCceEEEecCCCcc
Q 044162          303 VRSCLAKIRSRILMGCTILFGD-----DDFEELP---LTWSRAEEMGAICTLV--T----D-----ASVTHVVSSNTQSE  363 (369)
Q Consensus       303 Vr~il~~~r~~VL~g~~ivFSg-----~~p~~~p---~lw~la~~~GA~v~~~--i----~-----~~vTHvVa~~~gT~  363 (369)
                      +..+...+++..-..+.+++|+     +.|.+..   -+..|++.+|-....-  +    +     ..+.|=||..++.+
T Consensus       155 ~~~~~~~l~~~~~~~~~~~~s~~~~~eI~~~g~sKg~al~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag~~vAm~Na~~  234 (272)
T PRK15126        155 LTRLQIQLNEALGERAHLCFSATDCLEVLPVGCNKGAALAVLSQHLGLSLADCMAFGDAMNDREMLGSVGRGFIMGNAMP  234 (272)
T ss_pred             HHHHHHHHHHHhcCCEEEEEcCCcEEEeecCCCChHHHHHHHHHHhCCCHHHeEEecCCHHHHHHHHHcCCceeccCChH
Confidence            3343334433322345666665     4455422   8888999999532111  1    1     24678888888888


Q ss_pred             ccccc
Q 044162          364 TFEWA  368 (369)
Q Consensus       364 K~~~a  368 (369)
                      .++.+
T Consensus       235 ~vK~~  239 (272)
T PRK15126        235 QLRAE  239 (272)
T ss_pred             HHHHh
Confidence            77653

>PRK10976 putative hydrolase; Provisional

Probab=86.40  E-value=1.6  Score=41.01  Aligned_cols=64  Identities=8%  Similarity=-0.082  Sum_probs=35.8

Q ss_pred             HHHHHHHHhhhcCceEEecc-----cCCCCCh---hHHHHHHhcCCEEEe-----cc-C-----CCceEEEecCCCcccc
Q 044162          305 SCLAKIRSRILMGCTILFGD-----DDFEELP---LTWSRAEEMGAICTL-----VT-D-----ASVTHVVSSNTQSETF  365 (369)
Q Consensus       305 ~il~~~r~~VL~g~~ivFSg-----~~p~~~p---~lw~la~~~GA~v~~-----~i-~-----~~vTHvVa~~~gT~K~  365 (369)
                      .+...+++..-.++.+++|+     +.|.+..   -+..+|+.+|-....     |- +     ..+-|=||..++++.+
T Consensus       159 ~~~~~l~~~~~~~~~~~~s~~~~~eI~~~gvsKg~al~~l~~~lgi~~~~viafGD~~NDi~Ml~~ag~~vAm~NA~~~v  238 (266)
T PRK10976        159 PLEQAINARWGDRVNVSFSTLTCLEVMAGGVSKGHALEAVAKKLGYSLKDCIAFGDGMNDAEMLSMAGKGCIMGNAHQRL  238 (266)
T ss_pred             HHHHHHHHHhCCcEEEEEeCCceEEEEcCCCChHHHHHHHHHHcCCCHHHeEEEcCCcccHHHHHHcCCCeeecCCcHHH
Confidence            33334443333456666664     3344322   888899999954211     11 1     2466778888888777


Q ss_pred             ccc
Q 044162          366 EWA  368 (369)
Q Consensus       366 ~~a  368 (369)
                      +.+
T Consensus       239 K~~  241 (266)
T PRK10976        239 KDL  241 (266)
T ss_pred             HHh
Confidence            653

>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria

Probab=86.39  E-value=1.1  Score=42.75  Aligned_cols=101  Identities=12%  Similarity=0.155  Sum_probs=65.6

Q ss_pred             EEEEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeecc----------cc-----------
Q 044162          151 LLVKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITRED----------FK-----------  208 (369)
Q Consensus       151 ~~vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~----------~~-----------  208 (369)
                      -+...-|.+.++++.++ +..-+..+|+....|...-++.|--.|--|.++.+..+.          +.           
T Consensus        78 ~~~lie~~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~Lk~~gi~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~GIlf  157 (252)
T PF11019_consen   78 KMELIESDVPNIINSLQNKGIPVIALTARGPNMEDWTLRELKSLGIDFSSSSFPEDGIISFPVFDSALSRAPSFYDGILF  157 (252)
T ss_pred             ceEEcchhHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHHHHHCCCCccccccccCcceecccccCCCCCCceeecCeEE
Confidence            34566799999999998 679999999999999998887764444334333210000          00           


Q ss_pred             -Ccccc------cccccCCCCCcEEEEeCCcccccc----CCCceEEeCccccc
Q 044162          209 -QKERK------YLDLVLGQENSIVIVDDTESVWGG----RVENLITVGSYDFF  251 (369)
Q Consensus       209 -~~~~K------dL~~l~~~~~~vvIvDD~~~~w~~----~~~N~I~I~~y~fF  251 (369)
                       ...-|      =|+.++..++.||+|||+.+.-..    ....+|..--|+|-
T Consensus       158 t~~~~KG~~L~~fL~~~~~~pk~IIfIDD~~~nl~sv~~a~k~~~I~f~G~~Yt  211 (252)
T PF11019_consen  158 TGGQDKGEVLKYFLDKINQSPKKIIFIDDNKENLKSVEKACKKSGIDFIGFHYT  211 (252)
T ss_pred             eCCCccHHHHHHHHHHcCCCCCeEEEEeCCHHHHHHHHHHHhhCCCcEEEEEEc
Confidence             00111      234567789999999999866532    23466666666653

The function is not known.

>KOG3524 consensus Predicted guanine nucleotide exchange factor (PEBBLE) [Signal transduction mechanisms]

Probab=86.27  E-value=0.74  Score=49.34  Aligned_cols=56  Identities=14%  Similarity=0.159  Sum_probs=49.5

Q ss_pred             hhhcCceEEecccCCCCChhHHHHHHhcCCEEEeccCCCceEEEecCCCcccccccC
Q 044162          313 RILMGCTILFGDDDFEELPLTWSRAEEMGAICTLVTDASVTHVVSSNTQSETFEWAE  369 (369)
Q Consensus       313 ~VL~g~~ivFSg~~p~~~p~lw~la~~~GA~v~~~i~~~vTHvVa~~~gT~K~~~a~  369 (369)
                      ..++|..+.|+|..+... .+..+...||+.|..|...++||+||.+.+-+|.+.|+
T Consensus       117 ~~m~~vvlcfTg~rkk~e-~lv~lvh~mgg~irkd~nsktthli~n~s~gek~~~a~  172 (850)
T KOG3524|consen  117 ELMKDVVMCFTGERKKKE-ELVDLVHYMGGSIRKDTNSKTTHLIANKVEGEKQSIAL  172 (850)
T ss_pred             hhhcCceeeeeccchhhH-HHHHHHHHhcceeEeeeccCceEEEeecccceEEEEEe
Confidence            356888999999998865 88889999999999999999999999999988887663

>TIGR01680 Veg_Stor_Prot vegetative storage protein

Probab=86.06  E-value=2.9  Score=40.43  Aligned_cols=81  Identities=14%  Similarity=0.003  Sum_probs=49.3

Q ss_pred             CccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc-----cccccc---ccCCCCCcEE
Q 044162          156 RPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK-----ERKYLD---LVLGQENSIV  226 (369)
Q Consensus       156 RPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~-----~~KdL~---~l~~~~~~vv  226 (369)
                      =|+..+|++.+. ..+.|++-|.-....-..=++.|--.|--.-++++=|+.....     ..|.-.   .+...-.-+.
T Consensus       147 lp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL~kaGy~~~~~LiLR~~~D~~~~~av~yKs~~R~~li~eGYrIv~  226 (275)
T TIGR01680       147 LPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANLKKAGYHTWEKLILKDPQDNSAENAVEYKTAARAKLIQEGYNIVG  226 (275)
T ss_pred             ChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHHcCCCCcceeeecCCCCCccchhHHHHHHHHHHHHHcCceEEE
Confidence            489999999995 7899999998887665555666655552111455556442111     123221   1234456677


Q ss_pred             EEeCCccccc
Q 044162          227 IVDDTESVWG  236 (369)
Q Consensus       227 IvDD~~~~w~  236 (369)
                      .|+|...-+.
T Consensus       227 ~iGDq~sDl~  236 (275)
T TIGR01680       227 IIGDQWNDLK  236 (275)
T ss_pred             EECCCHHhcc
Confidence            8899865554

The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.

>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily

Probab=85.92  E-value=1.5  Score=40.02  Aligned_cols=31  Identities=16%  Similarity=0.192  Sum_probs=17.9

Q ss_pred             HHHHHHh-cCccEEEecCCcHHHHHHHHHHhC
Q 044162          161 SFLEEAS-RLFEISVCTLGNREYATRAVKLLD  191 (369)
Q Consensus       161 eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lD  191 (369)
                      +-|+++. +...+++.|--+...+..+++.++
T Consensus        22 ~al~~l~~~Gi~~~~aTGR~~~~~~~~~~~l~   53 (225)
T TIGR01482        22 EAIRKAESVGIPVVLVTGNSVQFARALAKLIG   53 (225)
T ss_pred             HHHHHHHHCCCEEEEEcCCchHHHHHHHHHhC
Confidence            3344443 445666666666666666666665

catalyze the same reaction as SPP.

>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]

Probab=85.09  E-value=1.4  Score=42.59  Aligned_cols=48  Identities=21%  Similarity=0.115  Sum_probs=30.7

Q ss_pred             ccHHHHHHHHhc-CccEEEecCCcHH----HHHHHHHHhCCCCCcccceEEeecc
Q 044162          157 PFVRSFLEEASR-LFEISVCTLGNRE----YATRAVKLLDPDCKYFNSRIITRED  206 (369)
Q Consensus       157 Pgl~eFL~~ls~-~yEi~I~T~g~~~----YA~~i~~~lDp~~~~f~~Ri~srd~  206 (369)
                      ||+.+||+.+.+ .-.+++-||++..    |+..+..+..++-.  .++|++...
T Consensus        27 pga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~~~--~~~i~TS~~   79 (269)
T COG0647          27 PGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGGVDVT--PDDIVTSGD   79 (269)
T ss_pred             chHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcCCCCC--HHHeecHHH
Confidence            899999999974 4788888988754    44455553444322  245664433

>TIGR00685 T6PP trehalose-phosphatase

Probab=84.99  E-value=0.78  Score=43.09  Aligned_cols=53  Identities=15%  Similarity=0.141  Sum_probs=35.5

Q ss_pred             CCceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHHHHHHHhcCc
Q 044162           91 MRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEASRLF  170 (369)
Q Consensus        91 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~eFL~~ls~~y  170 (369)
                      .||..|+||+||||+-....|.                                       ..+.=|++.+-|+.|++..
T Consensus         1 ~~~~~l~lD~DGTL~~~~~~p~---------------------------------------~~~~~~~~~~~L~~L~~~~   41 (244)
T TIGR00685         1 ARKRAFFFDYDGTLSEIVPDPD---------------------------------------AAVVSDRLLTILQKLAARP   41 (244)
T ss_pred             CCcEEEEEecCccccCCcCCCc---------------------------------------ccCCCHHHHHHHHHHHhCC
Confidence            3788999999999996443331                                       0223488999999999876


Q ss_pred             cEEEecCCcHHH
Q 044162          171 EISVCTLGNREY  182 (369)
Q Consensus       171 Ei~I~T~g~~~Y  182 (369)
                      ...|+=.+.|.+
T Consensus        42 ~~~v~ivSGR~~   53 (244)
T TIGR00685        42 HNAIWIISGRKF   53 (244)
T ss_pred             CCeEEEEECCCh
Confidence            655433334444

At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.

>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family

Probab=84.97  E-value=1.3  Score=42.43  Aligned_cols=23  Identities=13%  Similarity=0.010  Sum_probs=16.4

Q ss_pred             ccHHHHHHHHh-cCccEEEecCCc
Q 044162          157 PFVRSFLEEAS-RLFEISVCTLGN  179 (369)
Q Consensus       157 Pgl~eFL~~ls-~~yEi~I~T~g~  179 (369)
                      ||+.++|+++. +...+++.|+.+
T Consensus        21 ~ga~e~l~~L~~~g~~~~~~Tnns   44 (279)
T TIGR01452        21 PGAPELLDRLARAGKAALFVTNNS   44 (279)
T ss_pred             cCHHHHHHHHHHCCCeEEEEeCCC
Confidence            67778887776 456777888743

This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.

>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457

Probab=84.72  E-value=1.5  Score=41.42  Aligned_cols=14  Identities=29%  Similarity=0.577  Sum_probs=11.9

Q ss_pred             EEEEeCCCceeeec
Q 044162           95 HLVLDLDHTLLHSR  108 (369)
Q Consensus        95 ~LVLDLD~TLIhs~  108 (369)
                      .+++|+||||++..
T Consensus         3 ~~~~D~DGtl~~~~   16 (249)
T TIGR01457         3 GYLIDLDGTMYKGK   16 (249)
T ss_pred             EEEEeCCCceEcCC
Confidence            57899999999754

This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.

>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]

Probab=84.10  E-value=2.5  Score=39.76  Aligned_cols=50  Identities=16%  Similarity=0.317  Sum_probs=40.7

Q ss_pred             EEeCccHHHHHHHHhc--CccEEEecCCcHHHHHHHHHHhCCCCCcccceEEee
Q 044162          153 VKLRPFVRSFLEEASR--LFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITR  204 (369)
Q Consensus       153 vklRPgl~eFL~~ls~--~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~sr  204 (369)
                      +-.-||+-+-++.+++  .||+.|-+.++.-+.+.+++..+-. .+|. +|+|.
T Consensus        83 iP~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~Lea~~~~-d~F~-~IfTN  134 (256)
T KOG3120|consen   83 IPIVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEILEAAGIH-DLFS-EIFTN  134 (256)
T ss_pred             CCCCccHHHHHHHHHhCCCceEEEEecCchhHHHHHHHHccHH-HHHH-HHhcC
Confidence            4556999999988873  4899999999999999999998876 4674 56654

>COG4359 Uncharacterized conserved protein [Function unknown]

Probab=83.46  E-value=2.4  Score=38.75  Aligned_cols=41  Identities=15%  Similarity=0.167  Sum_probs=36.6

Q ss_pred             EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCC
Q 044162          153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPD  193 (369)
Q Consensus       153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~  193 (369)
                      +++|||.++|.+.+. +.-.++|-++|...|..+++..|--.
T Consensus        72 i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgk  113 (220)
T COG4359          72 IKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGK  113 (220)
T ss_pred             cccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhccc
Confidence            889999999999997 67889999999999999999876533

>PLN02151 trehalose-phosphatase

Probab=83.25  E-value=2.2  Score=42.86  Aligned_cols=63  Identities=17%  Similarity=0.126  Sum_probs=47.7

Q ss_pred             hhhcCCceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHHHHHHH
Q 044162           87 NLLRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEA  166 (369)
Q Consensus        87 ~ll~~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~eFL~~l  166 (369)
                      .+.+.+++.|+||+||||+--...|.                                       -+..-|.+.+-|+.+
T Consensus        92 ~~~~~~~~ll~lDyDGTL~PIv~~P~---------------------------------------~A~~~~~~~~aL~~L  132 (354)
T PLN02151         92 HKSEGKQIVMFLDYDGTLSPIVDDPD---------------------------------------RAFMSKKMRNTVRKL  132 (354)
T ss_pred             HhhcCCceEEEEecCccCCCCCCCcc---------------------------------------cccCCHHHHHHHHHH
Confidence            34567899999999999994332221                                       133458999999999


Q ss_pred             hcCccEEEecCCcHHHHHHHHH
Q 044162          167 SRLFEISVCTLGNREYATRAVK  188 (369)
Q Consensus       167 s~~yEi~I~T~g~~~YA~~i~~  188 (369)
                      ++.+.++|-|--...-.+.++.
T Consensus       133 a~~~~vaIvSGR~~~~l~~~~~  154 (354)
T PLN02151        133 AKCFPTAIVSGRCREKVSSFVK  154 (354)
T ss_pred             hcCCCEEEEECCCHHHHHHHcC
Confidence            9999999999887777776653

>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA

Probab=82.43  E-value=1.5  Score=41.08  Aligned_cols=33  Identities=18%  Similarity=0.179  Sum_probs=21.6

Q ss_pred             ccHHHHHHHHh-cCccEEEecCCc----HHHHHHHHHH
Q 044162          157 PFVRSFLEEAS-RLFEISVCTLGN----REYATRAVKL  189 (369)
Q Consensus       157 Pgl~eFL~~ls-~~yEi~I~T~g~----~~YA~~i~~~  189 (369)
                      |++.++|+.+. +.+.+.+-|+++    ..+++.+.+.
T Consensus        17 ~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~   54 (236)
T TIGR01460        17 PGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSL   54 (236)
T ss_pred             cCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            57777787776 457777777554    5566556553

Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.

>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase

Probab=82.38  E-value=2.1  Score=40.09  Aligned_cols=16  Identities=50%  Similarity=0.688  Sum_probs=13.1

Q ss_pred             ceEEEEeCCCceeeec
Q 044162           93 KLHLVLDLDHTLLHSR  108 (369)
Q Consensus        93 Kl~LVLDLD~TLIhs~  108 (369)
                      ++.++.||||||+++.
T Consensus         1 ~~li~tDlDGTLl~~~   16 (249)
T TIGR01485         1 RLLLVSDLDNTLVDHT   16 (249)
T ss_pred             CeEEEEcCCCcCcCCC
Confidence            4678999999999743

Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.

>PLN02423 phosphomannomutase

Probab=82.08  E-value=2.9  Score=39.47  Aligned_cols=18  Identities=28%  Similarity=0.337  Sum_probs=14.3

Q ss_pred             CCceEEEEeCCCceeeec
Q 044162           91 MRKLHLVLDLDHTLLHSR  108 (369)
Q Consensus        91 ~~Kl~LVLDLD~TLIhs~  108 (369)
                      ..|..+++||||||+++.
T Consensus         5 ~~~~i~~~D~DGTLl~~~   22 (245)
T PLN02423          5 KPGVIALFDVDGTLTAPR   22 (245)
T ss_pred             ccceEEEEeccCCCcCCC
Confidence            456677799999999764

>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490

Probab=81.99  E-value=2.4  Score=37.99  Aligned_cols=49  Identities=14%  Similarity=0.120  Sum_probs=41.9

Q ss_pred             EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEE
Q 044162          153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRII  202 (369)
Q Consensus       153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~  202 (369)
                      .+++||+.++|+.+. +.+.++|-|++...+++.+++.++-+. +|+.++.
T Consensus        86 ~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~~-~~~~~l~  135 (202)
T TIGR01490        86 SILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILGIDN-AIGTRLE  135 (202)
T ss_pred             HhccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCcc-eEecceE
Confidence            468999999999986 579999999999999999999988764 6766554

A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.

>PLN03017 trehalose-phosphatase

Probab=81.72  E-value=2.8  Score=42.26  Aligned_cols=63  Identities=16%  Similarity=0.080  Sum_probs=45.4

Q ss_pred             hhhhcCCceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHHHHHH
Q 044162           86 KNLLRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEE  165 (369)
Q Consensus        86 ~~ll~~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~eFL~~  165 (369)
                      ..+.+.+++.|+||+||||+--...+.                                       ....-|.+.+-|++
T Consensus       104 ~~~~~~k~~llflD~DGTL~Piv~~p~---------------------------------------~a~i~~~~~~aL~~  144 (366)
T PLN03017        104 MEASRGKQIVMFLDYDGTLSPIVDDPD---------------------------------------KAFMSSKMRRTVKK  144 (366)
T ss_pred             HHHhcCCCeEEEEecCCcCcCCcCCcc---------------------------------------cccCCHHHHHHHHH
Confidence            334678999999999999993322221                                       01234778888999


Q ss_pred             HhcCccEEEecCCcHHHHHHHH
Q 044162          166 ASRLFEISVCTLGNREYATRAV  187 (369)
Q Consensus       166 ls~~yEi~I~T~g~~~YA~~i~  187 (369)
                      +++.+.++|-|--...-+..+.
T Consensus       145 La~~~~vaIvSGR~~~~l~~~~  166 (366)
T PLN03017        145 LAKCFPTAIVTGRCIDKVYNFV  166 (366)
T ss_pred             HhcCCcEEEEeCCCHHHHHHhh
Confidence            9988999999877777766664

>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548

Probab=81.32  E-value=0.81  Score=41.17  Aligned_cols=15  Identities=33%  Similarity=0.459  Sum_probs=13.2

Q ss_pred             EEEEeCCCceeeecc
Q 044162           95 HLVLDLDHTLLHSRL  109 (369)
Q Consensus        95 ~LVLDLD~TLIhs~~  109 (369)
                      .+++||||||++|..
T Consensus         2 ~viFD~DGTLiDs~~   16 (197)
T TIGR01548         2 ALVLDMDGVMADVSQ   16 (197)
T ss_pred             ceEEecCceEEechH
Confidence            479999999999874

All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.

>KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair]

Probab=81.16  E-value=1.2  Score=48.95  Aligned_cols=55  Identities=18%  Similarity=0.108  Sum_probs=46.9

Q ss_pred             HhhhcCceEEecccCCCCChhHHHHHHhcCCEEEeccCCCceEEEecCCCccccc
Q 044162          312 SRILMGCTILFGDDDFEELPLTWSRAEEMGAICTLVTDASVTHVVSSNTQSETFE  366 (369)
Q Consensus       312 ~~VL~g~~ivFSg~~p~~~p~lw~la~~~GA~v~~~i~~~vTHvVa~~~gT~K~~  366 (369)
                      ...++|+.+.-.++-|.....+.+.+..+||....++++.|||+|+....+.|.-
T Consensus         7 ~~~~~~v~~~~t~i~p~~~~~l~~~~~~~Gg~~~~~~t~~~thli~~~~~s~~~~   61 (811)
T KOG1929|consen    7 SKPMSGVTFSPTGINPIKREELSKKFIKLGGIDFKDFTPSVTHLIVGSVTSSKYA   61 (811)
T ss_pred             CcccCCceeccCcCCHHHHHHHHHHHHhcCceeeeccCCcCceeecccccccchh
Confidence            3567788887777777666688899999999999999999999999999888763

>PLN02580 trehalose-phosphatase

Probab=80.67  E-value=3.3  Score=41.98  Aligned_cols=64  Identities=20%  Similarity=0.202  Sum_probs=49.5

Q ss_pred             hhhhcCCceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHHHHHH
Q 044162           86 KNLLRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEE  165 (369)
Q Consensus        86 ~~ll~~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~eFL~~  165 (369)
                      ..+.+.+++.|+||.||||.--...|.                                       -+..=|++.+-|+.
T Consensus       112 ~~~~~~k~~~LfLDyDGTLaPIv~~Pd---------------------------------------~A~~s~~~~~aL~~  152 (384)
T PLN02580        112 ANFAKGKKIALFLDYDGTLSPIVDDPD---------------------------------------RALMSDAMRSAVKN  152 (384)
T ss_pred             HHHhhcCCeEEEEecCCccCCCCCCcc---------------------------------------cccCCHHHHHHHHH
Confidence            345677899999999999985443331                                       13345899999999


Q ss_pred             HhcCccEEEecCCcHHHHHHHHH
Q 044162          166 ASRLFEISVCTLGNREYATRAVK  188 (369)
Q Consensus       166 ls~~yEi~I~T~g~~~YA~~i~~  188 (369)
                      +++.+.++|-|--.+.-.+..+.
T Consensus       153 La~~~~VAIVSGR~~~~L~~~l~  175 (384)
T PLN02580        153 VAKYFPTAIISGRSRDKVYELVG  175 (384)
T ss_pred             HhhCCCEEEEeCCCHHHHHHHhC
Confidence            99999999999888887776664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	369
3ef0_A	372	The Structure Of Fcp1, An Essential Rna Polymerase		8e-13
3ef1_A	442	The Structure Of Fcp1, An Essential Rna Polymerase		3e-10

>pdb|3EF0|A Chain A, The Structure Of Fcp1, An Essential Rna Polymerase Ii Ctd Phosphatase Length = 372

Iteration: 1
 Score = 71.2 bits (173), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 109/266 (40%), Gaps = 59/266 (22%)
Query: 153 VKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQKER 212
           +K RP +  FL++ S L+E+ + T+G + YA    K++DP  K F  R+++R+D     +
Sbjct: 74  IKFRPGLAQFLQKISELYELHIYTMGTKAYAKEVAKIIDPTGKLFQDRVLSRDDSGSLAQ 133
Query: 213 KYLDLVLGQENS-IVIVDDTESVWGGRVENLITVGSYX-------XXXXXXXNDCKSYSE 264
           K L  +   + S +V++DD   VW     NLI V  Y                + ++  E
Sbjct: 134 KSLRRLFPCDTSMVVVIDDRGDVWDWN-PNLIKVVPYEFFVGIGDINSNFLSGNREALEE 192
Query: 265 Q------------------------MSDESES----------DGALANILRALKAVHALY 290
           Q                        + DE +           D  L  + + LK +HA+Y
Sbjct: 193 QNKERVTALELQKSERPLAKQQNALLEDEGKPTPSHTLLHNRDHELERLEKVLKDIHAVY 252
Query: 291 FDN-------PGNHAAGRDVRSCLAKIRSRILMGCTILF------GDDDFEELPLTWSRA 337
           ++         GNH    +V   + K++ ++L GC +LF      G D        W  A
Sbjct: 253 YEEENDISSRSGNHKHA-NVGLIIPKMKQKVLKGCRLLFSGVIPLGVDVLSSDIAKW--A 309
Query: 338 EEMGAICTLVTDASVTHVVSSNTQSE 363
              GA   L      TH++++  ++E
Sbjct: 310 MSFGAEVVLDFSVPPTHLIAAKIRTE 335

>pdb|3EF1|A Chain A, The Structure Of Fcp1, An Essential Rna Polymerase Ii Ctd Phosphatase Length = 442

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 2/97 (2%)
Query: 153 VKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQKER 212
           +K RP +  FL++ S L+E+ + T+G + YA    K++DP  K F  R+++R+D     +
Sbjct: 82  IKFRPGLAQFLQKISELYELHIYTMGTKAYAKEVAKIIDPTGKLFQDRVLSRDDSGSLAQ 141
Query: 213 KYLDLVLGQENS-IVIVDDTESVWGGRVENLITVGSY 248
           K L  +   + S +V++DD   VW     NLI V  Y
Sbjct: 142 KSLRRLFPCDTSMVVVIDDRGDVWDWN-PNLIKVVPY 177

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	369
3ef0_A	372	RNA polymerase II subunit A C-terminal domain phos	4e-55
3ef1_A	442	RNA polymerase II subunit A C-terminal domain phos	4e-39
3ef1_A	442	RNA polymerase II subunit A C-terminal domain phos	3e-10
2ght_A	181	Carboxy-terminal domain RNA polymerase II polypept	3e-16
3qle_A	204	TIM50P; chaperone, mitochondrion, preprotein trans	5e-16
2hhl_A	195	CTD small phosphatase-like protein; CTD phosphatas	6e-16
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	9e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
3l3e_A	107	DNA topoisomerase 2-binding protein 1; BRCT domain	8e-05
2d8m_A	129	DNA-repair protein XRCC1; parallel beta-sheet, DNA	4e-04
3pa6_A	107	Microcephalin; BRCT domain, cell cycle; HET: MSE;	8e-04

>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe} Length = 372

 Score =  184 bits (467), Expect = 4e-55
 Identities = 74/346 (21%), Positives = 141/346 (40%), Gaps = 61/346 (17%)

Query: 77  ISRLKKRNTKNLLRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEK-AAAAAGEFSSDKI 135
           +SRL+  N K L + ++L L++DLD T++H+ +   +                +  S  +
Sbjct: 2   LSRLESENVKRLRQEKRLSLIVDLDQTIIHATVDPTVGEWMSDPGNVNYDVLRDVRSFNL 61

Query: 136 SRGNDLFKIKIGDNVLLVKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCK 195
             G   +          +K RP +  FL++ S L+E+ + T+G + YA    K++DP  K
Sbjct: 62  QEGPSGYTSCY-----YIKFRPGLAQFLQKISELYELHIYTMGTKAYAKEVAKIIDPTGK 116

Query: 196 YFNSRIITREDFKQKERKYLDLVLGQENS-IVIVDDTESVWGGRVENLITVGSYDFFKD- 253
            F  R+++R+D     +K L  +   + S +V++DD   VW     NLI V  Y+FF   
Sbjct: 117 LFQDRVLSRDDSGSLAQKSLRRLFPCDTSMVVVIDDRGDVWDWN-PNLIKVVPYEFFVGI 175

Query: 254 --------------------------KKKNDCKSYSEQMSDE--------------SESD 273
                                     + +   +  ++Q +                   D
Sbjct: 176 GDINSNFLSGNREALEEQNKERVTALELQKSERPLAKQQNALLEDEGKPTPSHTLLHNRD 235

Query: 274 GALANILRALKAVHALYFDNPGNHAAGR------DVRSCLAKIRSRILMGCTILF----- 322
             L  + + LK +HA+Y++   + ++        +V   + K++ ++L GC +LF     
Sbjct: 236 HELERLEKVLKDIHAVYYEEENDISSRSGNHKHANVGLIIPKMKQKVLKGCRLLFSGVIP 295

Query: 323 GDDDFEELPLTWSRAEEMGAICTLVTDASVTHVVSSNTQSETFEWA 368
              D     +    A   GA   L      TH++++  ++E  + A
Sbjct: 296 LGVDVLSSDI-AKWAMSFGAEVVLDFSVPPTHLIAAKIRTEKVKKA 340

>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe} Length = 442

 Score =  143 bits (362), Expect = 4e-39
 Identities = 53/189 (28%), Positives = 92/189 (48%), Gaps = 8/189 (4%)

Query: 69  GLRYSIDEISRLKKRNTKNLLRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAG 128
            L  S++E SRL+  N K L + ++L L++ LD T++H+ +   +               
Sbjct: 2   DLTVSLEEASRLESENVKRLRQEKRLSLIVXLDQTIIHATVDPTVGEWMSDPGNV----- 56

Query: 129 EFSSDKISRGNDLFKIKIGDNV-LLVKLRPFVRSFLEEASRLFEISVCTLGNREYATRAV 187
            +   +  R  +L +   G      +K RP +  FL++ S L+E+ + T+G + YA    
Sbjct: 57  NYDVLRDVRSFNLQEGPSGYTSCYYIKFRPGLAQFLQKISELYELHIYTMGTKAYAKEVA 116

Query: 188 KLLDPDCKYFNSRIITREDFKQKERKYLDLVLGQENS-IVIVDDTESVWGGRVENLITVG 246
           K++DP  K F  R+++R+D     +K L  +   + S +V++DD   VW     NLI V 
Sbjct: 117 KIIDPTGKLFQDRVLSRDDSGSLAQKSLRRLFPCDTSMVVVIDDRGDVWDWN-PNLIKVV 175

Query: 247 SYDFFKDKK 255
            Y+FF    
Sbjct: 176 PYEFFVGIG 184

>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe} Length = 442

 Score = 60.4 bits (145), Expect = 3e-10
 Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 12/124 (9%)

Query: 256 KNDCKSYSEQMSDESESDGALANILRALKAVHALYFDNPGNHAAGR------DVRSCLAK 309
             D    +   +     D  L  + + LK +HA+Y++   + ++        +V   + K
Sbjct: 288 LEDEGKPTPSHTLLHNRDHELERLEKVLKDIHAVYYEEENDISSRSGNHKHANVGLIIPK 347

Query: 310 IRSRILMGCTILF-----GDDDFEELPLTWSRAEEMGAICTLVTDASVTHVVSSNTQSET 364
           ++ ++L GC +LF        D     +    A   GA   L      TH++++  ++E 
Sbjct: 348 MKQKVLKGCRLLFSGVIPLGVDVLSSDI-AKWAMSFGAEVVLDFSVPPTHLIAAKIRTEK 406

Query: 365 FEWA 368
            + A
Sbjct: 407 VKKA 410

>2ght_A Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1; protein-peptide complex, HAD superfamily, hydrolase; HET: SEP; 1.80A {Homo sapiens} PDB: 2ghq_A* 3pgl_A* 1t9z_A* 1ta0_A* 3l0c_A 3l0y_A 3l0b_A* 2q5e_A Length = 181

 Score = 75.1 bits (185), Expect = 3e-16
 Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 30/162 (18%)

Query: 92  RKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVL 151
            K+ +V++LD TL+HS                       S   ++  + +  ++I   V 
Sbjct: 14  DKICVVINLDETLVHS-----------------------SFKPVNNADFIIPVEIDGVVH 50

Query: 152 L--VKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQ 209
              V  RP V  FL+    LFE  + T    +YA     LLD     F +R + RE    
Sbjct: 51  QVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKW-GAFRAR-LFRESCVF 108

Query: 210 KERKYL-DL-VLGQE-NSIVIVDDTESVWGGRVENLITVGSY 248
               Y+ DL  LG++   ++I+D++ + +    +N + V S+
Sbjct: 109 HRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASW 150

>3qle_A TIM50P; chaperone, mitochondrion, preprotein translocation; HET: 1PE; 1.83A {Saccharomyces cerevisiae EC1118} Length = 204

 Score = 75.1 bits (185), Expect = 5e-16
 Identities = 40/227 (17%), Positives = 76/227 (33%), Gaps = 69/227 (30%)

Query: 90  RMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDN 149
             R L LV+ L+  L+HS                     E+S     R            
Sbjct: 31  YQRPLTLVITLEDFLVHS---------------------EWSQKHGWR------------ 57

Query: 150 VLLVKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQ 209
                 RP    FL   S+ +EI + +     Y+ +  + LDP   + +   + +E    
Sbjct: 58  ---TAKRPGADYFLGYLSQYYEIVLFSSNYMMYSDKIAEKLDPIHAFVSYN-LFKEHCVY 113

Query: 210 KERKYL-DL-VLGQE-NSIVIVDDTESVWGGRVENLITVGSYDFFKDKKKNDCKSYSEQM 266
           K+  ++ DL  L ++ + ++I+D   + +  + EN I +  ++                 
Sbjct: 114 KDGVHIKDLSKLNRDLSKVIIIDTDPNSYKLQPENAIPMEPWN----------------- 156

Query: 267 SDESESDGALANILRALKAVHALYFDNPGNHAAGRDVRSCLAKIRSR 313
               E+D  L  ++  L+ +               DVR  L     +
Sbjct: 157 ---GEADDKLVRLIPFLEYLATQQTK---------DVRPILNSFEDK 191

>2hhl_A CTD small phosphatase-like protein; CTD phosphatase, keggins anion, structural genomics, PSI, protein structure initiative; HET: KEG; 2.10A {Homo sapiens} Length = 195

 Score = 74.3 bits (183), Expect = 6e-16
 Identities = 44/162 (27%), Positives = 68/162 (41%), Gaps = 30/162 (18%)

Query: 92  RKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVL 151
            K  +V+DLD TL+HS                       S   IS  + +  ++I   + 
Sbjct: 27  GKKCVVIDLDETLVHS-----------------------SFKPISNADFIVPVEIDGTIH 63

Query: 152 L--VKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQ 209
              V  RP V  FL+   +LFE  + T    +YA     LLD     F    + RE    
Sbjct: 64  QVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPVADLLDRW-GVF-RARLFRESCVF 121

Query: 210 KERKYL-DL-VLGQE-NSIVIVDDTESVWGGRVENLITVGSY 248
               Y+ DL  LG+E + ++IVD++ + +    EN + V S+
Sbjct: 122 HRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQSW 163

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster} Length = 320

 Score = 49.1 bits (116), Expect = 9e-07
 Identities = 15/121 (12%), Positives = 43/121 (35%), Gaps = 17/121 (14%)

Query: 155 LRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITRED-------- 206
           +RP++  FL  A   ++I + +  +  +    ++LL       N +++   D        
Sbjct: 165 MRPYLHEFLTSAYEDYDIVIWSATSMRWIEEKMRLLGVA-SNDNYKVMFYLDSTAMISVH 223

Query: 207 ---FKQKERKYLDLVLGQ-----ENSIVIVDDTESVWGGRVENLITVGSYDFFKDKKKND 258
                  + K L ++         ++ ++ DD    +    ++ + +  +      +  D
Sbjct: 224 VPERGVVDVKPLGVIWALYKQYNSSNTIMFDDIRRNFLMNPKSGLKIRPFRQAHLNRGTD 283

Query: 259 C 259
            
Sbjct: 284 T 284

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 2e-05
 Identities = 35/237 (14%), Positives = 78/237 (32%), Gaps = 61/237 (25%)

Query: 29  LSVSEEHTICPHATILNGMCVV-CDKLMDDSYGLCFDYIEKGLRYSIDEISRLKKRNTKN 87
           LSV       P       + ++  D +  D        + K  +YS+     ++K+  ++
Sbjct: 378 LSVFPPSAHIPTIL----LSLIWFDVIKSD----VMVVVNKLHKYSL-----VEKQPKES 424

Query: 88  LLRMRKLHLVLDL---DHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISR------G 138
            + +  ++L L +   +   LH  ++      + Y       + +     + +      G
Sbjct: 425 TISIPSIYLELKVKLENEYALHRSIV------DHYNIPKTFDSDDLIPPYLDQYFYSHIG 478

Query: 139 NDLFKIKIGDNV-----LLVKLRPFVRSFLEEASRLFEISVCTLGN--------REYATR 185
           + L  I+  + +     + +  R     FLE+  R    +    G+        + Y   
Sbjct: 479 HHLKNIEHPERMTLFRMVFLDFR-----FLEQKIRHDSTAWNASGSILNTLQQLKFYK-- 531

Query: 186 AVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLV---LGQENSIVIVDDTES 233
               +  +   +   +    DF  K        KY DL+   L  E+   I ++   
Sbjct: 532 --PYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDE-AIFEEAHK 585

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 1e-04
 Identities = 33/241 (13%), Positives = 73/241 (30%), Gaps = 53/241 (21%)

Query: 163 LEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQKE---RKYLDLVL 219
           +    RLF   + +           ++L  + K+  S I  + + +Q     R Y++   
Sbjct: 61  VSGTLRLFWT-LLSKQEEMVQKFVEEVLRINYKFLMSPI--KTEQRQPSMMTRMYIEQRD 117

Query: 220 GQENSIVIVDD------------TESVWGGRVENLITV----GS---------YDFFKDK 254
              N   +                +++   R    + +    GS            +K +
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177

Query: 255 KKNDCKSYSEQMSDESESDGALANILRALKAVHALYFDNPGNHAAGRDVRSCLAKIRSRI 314
            K D K +   +     S   +  +L+ L       + +  +H++   +R    +   R 
Sbjct: 178 CKMDFKIFWLNLK-NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236

Query: 315 LMGCT-------ILFGDDDFEELPLTWSR--AEEMGAIC-TLVT--DASVTHVVSSNTQS 362
           L+          +L   +         +          C  L+T     VT  +S+ T +
Sbjct: 237 LLKSKPYENCLLVL--LN-------VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287

Query: 363 E 363
            
Sbjct: 288 H 288

>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 129

 Score = 38.7 bits (90), Expect = 4e-04
 Identities = 9/68 (13%), Positives = 20/68 (29%)

Query: 302 DVRSCLAKIRSRILMGCTILFGDDDFEELPLTWSRAEEMGAICTLVTDASVTHVVSSNTQ 361
                  +   +IL G  ++              +A E+GA          TH++ +   
Sbjct: 10  RRPRAGPEELGKILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFAN 69

Query: 362 SETFEWAE 369
           +  +    
Sbjct: 70  TPKYSQVL 77

>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A* Length = 107

 Score = 37.6 bits (87), Expect = 8e-04
 Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 8/67 (11%)

Query: 308 AKIRSRILMGCTILF------GDDDFEELPLTWSRAEEMGAICTLVTDASVTHVVSSNTQ 361
             + + IL             G +++ +     ++  +MGA  +   +  VTHV+  +  
Sbjct: 1   GHMAAPILKDVVAYVEVWSSNGTENYSKT--FTTQLVDMGAKVSKTFNKQVTHVIFKDGY 58

Query: 362 SETFEWA 368
             T++ A
Sbjct: 59  QSTWDKA 65

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	369
3ef1_A	442	RNA polymerase II subunit A C-terminal domain phos	100.0
3ef0_A	372	RNA polymerase II subunit A C-terminal domain phos	100.0
3qle_A	204	TIM50P; chaperone, mitochondrion, preprotein trans	100.0
2ght_A	181	Carboxy-terminal domain RNA polymerase II polypept	100.0
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	99.98
2hhl_A	195	CTD small phosphatase-like protein; CTD phosphatas	99.97
3l3e_A	107	DNA topoisomerase 2-binding protein 1; BRCT domain	98.84
2d8m_A	129	DNA-repair protein XRCC1; parallel beta-sheet, DNA	98.69
3l46_A	112	Protein ECT2; alternative splicing, guanine-nucleo	98.59
2cou_A	109	ECT2 protein; BRCT domain, RHO GTPase, structural	98.59
4id3_A	92	DNA repair protein REV1; BRCT domain, protein bind	98.46
2ebw_A	97	DNA repair protein REV1; A/B/A 3 layers, parallel	98.29
3pa6_A	107	Microcephalin; BRCT domain, cell cycle; HET: MSE;	98.29
2wm8_A	187	MDP-1, magnesium-dependent phosphatase 1; haloacid	98.21
1wf6_A	132	Similar to S.pombe -RAD4+/CUT5+product (A40727); B	98.14
3olc_X	298	DNA topoisomerase 2-binding protein 1; BRCT domain	98.14
3kbb_A	216	Phosphorylated carbohydrates phosphatase TM_1254;	98.13
3pc6_A	104	DNA repair protein XRCC1; BRCT domain, protein:pro	98.1
3olc_X	298	DNA topoisomerase 2-binding protein 1; BRCT domain	98.08
2fpr_A	176	Histidine biosynthesis bifunctional protein HISB;	98.04
1l7b_A	92	DNA ligase; BRCT, autostructure, structural genomi	98.03
3ib6_A	189	Uncharacterized protein; structural genomics, unkn	97.96
3m9l_A	205	Hydrolase, haloacid dehalogenase-like family; HAD	97.89
3l8h_A	179	Putative haloacid dehalogenase-like hydrolase; HAD	97.88
2pr7_A	137	Haloacid dehalogenase/epoxide hydrolase family; NP	97.85
3m1y_A	217	Phosphoserine phosphatase (SERB); NYSGXRC, PSI II,	97.78
2gmw_A	211	D,D-heptose 1,7-bisphosphate phosphatase; Zn-bindi	97.77
3kzx_A	231	HAD-superfamily hydrolase, subfamily IA, variant;	97.75
3umb_A	233	Dehalogenase-like hydrolase; 2.20A {Ralstonia sola	97.75
2k6g_A	109	Replication factor C subunit 1; protein, BRCT, DNA	97.7
3um9_A	230	Haloacid dehalogenase, type II; haloacid dehalogen	97.66
2ebu_A	112	Replication factor C subunit 1; A/B/A 3 layers, pa	97.63
2p9j_A	162	Hypothetical protein AQ2171; secsg, riken, PSI, st	97.61
2jw5_A	106	DNA polymerase lambda; BRCT domain, family X polym	97.55
2w43_A	201	Hypothetical 2-haloalkanoic acid dehalogenase; hyd	97.53
2etx_A	209	Mediator of DNA damage checkpoint protein 1; tande	97.53
3sqd_A	219	PAX-interacting protein 1; tandem BRCT domains, ce	97.44
2cok_A	113	Poly [ADP-ribose] polymerase-1; BRCT domain, DNA r	97.42
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	97.4
2oda_A	196	Hypothetical protein pspto_2114; haloacid dehaloge	97.4
4eze_A	317	Haloacid dehalogenase-like hydrolase; magnesium bi	97.4
3nvb_A	387	Uncharacterized protein; protein FKBH, protein fkb	97.39
2o2x_A	218	Hypothetical protein; structural genomics, joint c	97.34
3fvv_A	232	Uncharacterized protein; unknown function, structu	97.31
3al2_A	235	DNA topoisomerase 2-binding protein 1; BRCT domain	97.15
3ij5_A	211	3-deoxy-D-manno-octulosonate 8-phosphate phosphat;	97.13
3e8m_A	164	Acylneuraminate cytidylyltransferase; 2-keto-3-deo	97.06
2b0c_A	206	Putative phosphatase; alpha-D-glucose-1-phosphate,	96.98
1k1e_A	180	Deoxy-D-mannose-octulosonate 8-phosphate phosphat;	96.98
3mmz_A	176	Putative HAD family hydrolase; structural genomics	96.95
3mn1_A	189	Probable YRBI family phosphatase; structural genom	96.95
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	96.94
3n07_A	195	3-deoxy-D-manno-octulosonate 8-phosphate phosphat;	96.66
4ap9_A	201	Phosphoserine phosphatase; hydrolase, haloacid deh	96.64
2r8e_A	188	3-deoxy-D-manno-octulosonate 8-phosphate phosphata	96.6
2i7d_A	193	5'(3')-deoxyribonucleotidase, cytosolic type; hydr	96.6
3pct_A	260	Class C acid phosphatase; hydrolase, outer membran	96.53
3n1u_A	191	Hydrolase, HAD superfamily, subfamily III A; struc	96.49
3u3z_A	199	Microcephalin; DNA repair, cell cycle regulation,	96.46
3skx_A	280	Copper-exporting P-type ATPase B; P1B-ATPase, ATP	96.38
2coe_A	120	Deoxynucleotidyltransferase, terminal variant; BRC	96.29
3ocu_A	262	Lipoprotein E; hydrolase, outer membrane; HET: NMN	96.29
2gfh_A	260	Haloacid dehalogenase-like hydrolase domain conta;	96.27
2i33_A	258	Acid phosphatase; HAD superfamily, hydrolase; 1.57	96.23
2pib_A	216	Phosphorylated carbohydrates phosphatase TM_1254;	96.15
1dgs_A	667	DNA ligase; AMP complex, NAD+-dependent; HET: DNA	96.11
1rku_A	206	Homoserine kinase; phosphoserine phosphatase, phos	96.06
3qnm_A	240	Haloacid dehalogenase-like hydrolase; structural g	96.04
3e58_A	214	Putative beta-phosphoglucomutase; structu genomics	96.04
2ah5_A	210	COG0546: predicted phosphatases; MCSG, structural	96.01
3ii6_X	263	DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alter	95.98
2ep8_A	100	Pescadillo homolog 1; A/B/A 3 layers, nucleolus, r	95.97
2obb_A	142	Hypothetical protein; structural genomics, PSI-2,	95.93
3sd7_A	240	Putative phosphatase; structural genomics, haloaci	95.89
2nyv_A	222	Pgpase, PGP, phosphoglycolate phosphatase; structu	95.88
2hi0_A	240	Putative phosphoglycolate phosphatase; YP_619066.1	95.86
3s6j_A	233	Hydrolase, haloacid dehalogenase-like family; stru	95.8
2hoq_A	241	Putative HAD-hydrolase PH1655; haloacid dehalogena	95.8
3ed5_A	238	YFNB; APC60080, bacillus subtilis subsp. subtilis	95.76
3ii6_X	263	DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alter	95.74
2hsz_A	243	Novel predicted phosphatase; structural genomics,	95.67
1zrn_A	232	L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseud	95.67
2hdo_A	209	Phosphoglycolate phosphatase; NP_784602.1, structu	95.66
4eek_A	259	Beta-phosphoglucomutase-related protein; hydrolase	95.53
3mc1_A	226	Predicted phosphatase, HAD family; PSI2, NYSGXRC,	95.5
2no4_A	240	(S)-2-haloacid dehalogenase IVA; HAD superfamily,	95.46
4ex6_A	237	ALNB; modified rossman fold, phosphatase, magnesiu	95.46
2zg6_A	220	Putative uncharacterized protein ST2620, probable	95.45
1yns_A	261	E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo	95.36
1qq5_A	253	Protein (L-2-haloacid dehalogenase); hydrolase; 1.	95.32
2i6x_A	211	Hydrolase, haloacid dehalogenase-like family; HAD	95.3
4dcc_A	229	Putative haloacid dehalogenase-like hydrolase; mag	95.28
1kzy_C	259	Tumor suppressor P53-binding protein 1; tandem-BRC	95.22
3u26_A	234	PF00702 domain protein; structural genomics, PSI-b	95.19
3pc7_A	88	DNA ligase 3; DNA repair, BRCT domain, protein:pro	95.11
3ddh_A	234	Putative haloacid dehalogenase-like family hydrol;	95.09
2owo_A	671	DNA ligase; protein-DNA complex, ligase-DNA comple	95.04
2hcf_A	234	Hydrolase, haloacid dehalogenase-like family; NP_6	94.9
2pke_A	251	Haloacid delahogenase-like family hydrolase; NP_63	94.85
3cnh_A	200	Hydrolase family protein; NP_295428.1, predicted h	94.77
2b82_A	211	APHA, class B acid phosphatase; DDDD acid phosphat	94.73
1qyi_A	384	ZR25, hypothetical protein; structural genomics, P	94.71
3iru_A	277	Phoshonoacetaldehyde hydrolase like protein; phosp	94.51
3nuq_A	282	Protein SSM1, putative nucleotide phosphatase; sup	94.44
3a1c_A	287	Probable copper-exporting P-type ATPase A; ATP-bin	94.44
2fea_A	236	2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate	94.35
1z56_C	264	DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA	94.35
1nnl_A	225	L-3-phosphoserine phosphatase; PSP, HPSP, phospho-	94.28
3smv_A	240	S-(-)-azetidine-2-carboxylate hydrolase; haloacid	94.27
3umc_A	254	Haloacid dehalogenase; HY; 2.15A {Pseudomonas aeru	94.24
3dv9_A	247	Beta-phosphoglucomutase; structural genomics, APC6	94.09
3qxg_A	243	Inorganic pyrophosphatase; hydrolase, magnesium bi	94.01
3k1z_A	263	Haloacid dehalogenase-like hydrolase domain-conta	93.98
2om6_A	235	Probable phosphoserine phosphatase; rossmann fold,	93.75
4g9b_A	243	Beta-PGM, beta-phosphoglucomutase; HAD, putative p	93.75
3nas_A	233	Beta-PGM, beta-phosphoglucomutase; PSI, structural	93.7
1te2_A	226	Putative phosphatase; structural genomics, phospha	93.65
3umg_A	254	Haloacid dehalogenase; defluorinase, hydrolase; 2.	93.65
3ewi_A	168	N-acylneuraminate cytidylyltransferase; beta barre	93.43
2dun_A	133	POL MU, DNA polymerase MU; layers A/B/A, parallel	93.41
3kc2_A	352	Uncharacterized protein YKR070W; HAD-like, mitocho	93.11
2go7_A	207	Hydrolase, haloacid dehalogenase-like family; stru	93.07
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	92.97
3d6j_A	225	Putative haloacid dehalogenase-like hydrolase; str	92.9
2qlt_A	275	(DL)-glycerol-3-phosphatase 1; APC7326, RHR2P, sac	92.83
1wr8_A	231	Phosphoglycolate phosphatase; alpha / beta core do	92.82
2p11_A	231	Hypothetical protein; putative haloacid dehalogena	92.82
3gyg_A	289	NTD biosynthesis operon putative hydrolase NTDB; P	92.43
2fdr_A	229	Conserved hypothetical protein; SAD, structural ge	92.13
1l6r_A	227	Hypothetical protein TA0175; structural genomics,	91.94
3mpo_A	279	Predicted hydrolase of the HAD superfamily; SGX, P	91.82
1xvi_A	275	MPGP, YEDP, putative mannosyl-3-phosphoglycerate p	91.7
2g80_A	253	Protein UTR4; YEL038W, UTR4 protein (unknown trans	91.7
3dnp_A	290	Stress response protein YHAX; structural PSI-2, pr	91.66
1xpj_A	126	Hypothetical protein; structural genomics, MCSG, p	91.59
4dw8_A	279	Haloacid dehalogenase-like hydrolase; HAD, putativ	91.57
1z56_C	264	DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA	91.47
3i28_A	555	Epoxide hydrolase 2; aromatic hydrocarbons catabol	91.47
4gib_A	250	Beta-phosphoglucomutase; rossmann fold, HAD-like,	91.45
3qgm_A	268	P-nitrophenyl phosphatase (PHO2); structural genom	91.36
3l5k_A	250	Protein GS1, haloacid dehalogenase-like hydrolase	91.34
3pgv_A	285	Haloacid dehalogenase-like hydrolase; structural g	91.24
3kd3_A	219	Phosphoserine phosphohydrolase-like protein; csgid	91.23
2fi1_A	190	Hydrolase, haloacid dehalogenase-like family; stru	91.23
3bwv_A	180	Putative 5'(3')-deoxyribonucleotidase; NP_764060.1	90.5
3qbz_A	160	DDK kinase regulatory subunit DBF4; FHA domain,RAD	90.47
1swv_A	267	Phosphonoacetaldehyde hydrolase; HAD enzyme superf	90.45
1nf2_A	268	Phosphatase; structural proteomics, HAD NEW fold,	90.34
1nrw_A	288	Hypothetical protein, haloacid dehalogenase-like h	90.18
3epr_A	264	Hydrolase, haloacid dehalogenase-like family; stru	90.06
3dao_A	283	Putative phosphatse; structural genomics, joint ce	89.71
2zos_A	249	MPGP, mannosyl-3-phosphoglycerate phosphatase; hal	89.67
3pdw_A	266	Uncharacterized hydrolase YUTF; structural genomic	89.33
2pq0_A	258	Hypothetical conserved protein GK1056; hyopthetica	89.25
3vay_A	230	HAD-superfamily hydrolase; rossmann fold, haloacid	89.15
1q92_A	197	5(3)-deoxyribonucleotidase; alpha-beta rossman fol	88.84
2wf7_A	221	Beta-PGM, beta-phosphoglucomutase; transition stat	88.82
1vjr_A	271	4-nitrophenylphosphatase; TM1742, structural genom	88.58
1rkq_A	282	Hypothetical protein YIDA; two domain structure wi	88.31
1s2o_A	244	SPP, sucrose-phosphatase; phosphohydrolase, HAD su	88.22
2yj3_A	263	Copper-transporting ATPase; hydrolase, P-type ATPa	87.86
1zjj_A	263	Hypothetical protein PH1952; alpha/beta hydrolase	87.61
2hx1_A	284	Predicted sugar phosphatases of the HAD superfamil	87.57
3fzq_A	274	Putative hydrolase; YP_001086940.1, putative haloa	87.05
2fue_A	262	PMM 1, PMMH-22, phosphomannomutase 1; enzyme-produ	86.92
2b30_A	301	Pvivax hypothetical protein; SGPP, structural geno	86.7
3n28_A	335	Phosphoserine phosphatase; HAD family hydrolase, s	86.62
1l0b_A	229	BRCA1; TANDEM-BRCT, three-helix bundle, unknown fu	86.01
2oyc_A	306	PLP phosphatase, pyridoxal phosphate phosphatase;	85.73
2amy_A	246	PMM 2, phosphomannomutase 2; HS.459855, HS.313504,	85.08
1l7m_A	211	Phosphoserine phosphatase; rossmann fold, four-hel	84.79
3oq0_A	151	DBF4, protein DNA52; DDK, BRCT, RAD53, replication	83.82
2ho4_A	259	Haloacid dehalogenase-like hydrolase domain contai	83.64
3f9r_A	246	Phosphomannomutase; trypanosome glycobiology struc	83.59
2etx_A	209	Mediator of DNA damage checkpoint protein 1; tande	83.24
3l7y_A	304	Putative uncharacterized protein SMU.1108C; hydrol	83.12
1q92_A	197	5(3)-deoxyribonucleotidase; alpha-beta rossman fol	83.01
1l7m_A	211	Phosphoserine phosphatase; rossmann fold, four-hel	82.88
1rlm_A	271	Phosphatase; HAD family, rossman fold, hydrolase;	82.64
1yv9_A	264	Hydrolase, haloacid dehalogenase family; hypotheti	82.25
2x4d_A	271	HLHPP, phospholysine phosphohistidine inorganic py	82.14
2rbk_A	261	Putative uncharacterized protein; HAD-like phospha	81.51
1u02_A	239	Trehalose-6-phosphate phosphatase related protein;	81.33
1t15_A	214	Breast cancer type 1 susceptibility protein; prote	80.06
3bwv_A	180	Putative 5'(3')-deoxyribonucleotidase; NP_764060.1	80.02

>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.3e-64  Score=505.51  Aligned_cols=288  Identities=25%  Similarity=0.428  Sum_probs=243.8

Q ss_pred             CCcccCHHHHHHHhhhhhhhhhcCCceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCcccccc---CCCceeEE
Q 044162           68 KGLRYSIDEISRLKKRNTKNLLRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKIS---RGNDLFKI  144 (369)
Q Consensus        68 ~~l~vs~~~a~~~~~~~~~~ll~~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p---~~~~~~~~  144 (369)
                      +||+||++||++++++..+||+..+|++||||||||||||+..+.+.++...       .      ..|   ...+++.|
T Consensus         1 ~~l~vs~~~a~~~~~~~~~rll~~~Kl~LVLDLDeTLiHs~~~~~~~~~~~~-------~------~~~~~~~~~dv~~F   67 (442)
T 3ef1_A            1 SDLTVSLEEASRLESENVKRLRQEKRLSLIVXLDQTIIHATVDPTVGEWMSD-------P------GNVNYDVLRDVRSF   67 (442)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHTTCEEEEECCBTTTEEEECCTHHHHHHTC-------T------TSTTTGGGTTCEEE
T ss_pred             CCceecHHHHHHHHHHHHHHHHhcCCeEEEEeeccceeccccccccchhccC-------C------CCcchhhhccccce
Confidence            5899999999999999999999999999999999999999987743211000       0      000   02344444


Q ss_pred             EEc------CceEEEEeCccHHHHHHHHhcCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCccccccccc
Q 044162          145 KIG------DNVLLVKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKYLDLV  218 (369)
Q Consensus       145 ~~~------~~~~~vklRPgl~eFL~~ls~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~~~KdL~~l  218 (369)
                      .+.      +.+|||++|||+++||++++++|||+|||+|.+.||++|++.|||++.||++|+|+|++|+..++|||+++
T Consensus        68 ~l~~~~~~~~~~~~V~~RPgl~eFL~~ls~~yEivIfTas~~~YA~~Vl~~LDp~~~~f~~Rl~sRd~cg~~~~KdL~~l  147 (442)
T 3ef1_A           68 NLQEGPSGYTSCYYIKFRPGLAQFLQKISELYELHIYTMGTKAYAKEVAKIIDPTGKLFQDRVLSRDDSGSLAQKSLRRL  147 (442)
T ss_dssp             EEEETTTTEEEEEEEEECTTHHHHHHHHTTTEEEEEECSSCHHHHHHHHHHHCTTSTTTTTCEECTTTSSCSSCCCGGGT
T ss_pred             eeeeccCCceeEEEEEeCCCHHHHHHHHhCCcEEEEEcCCCHHHHHHHHHHhccCCccccceEEEecCCCCceeeehHHh
Confidence            432      34899999999999999999999999999999999999999999999999999999999988789999965


Q ss_pred             -CCCCCcEEEEeCCccccccCCCceEEeCcccccccccCCCCC------------cc-c-----c---------------
Q 044162          219 -LGQENSIVIVDDTESVWGGRVENLITVGSYDFFKDKKKNDCK------------SY-S-----E---------------  264 (369)
Q Consensus       219 -~~~~~~vvIvDD~~~~w~~~~~N~I~I~~y~fF~~~~~~~~~------------s~-~-----e---------------  264 (369)
                       ++++++||||||++.+|..|+ |+|+|.||+||.+.|+.+.+            .+ .     .               
T Consensus       148 l~rdl~~vvIIDd~p~~~~~~p-N~I~I~~~~fF~~~gD~n~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (442)
T 3ef1_A          148 FPCDTSMVVVIDDRGDVWDWNP-NLIKVVPYEFFVGIGDINSNFLAKSTPLPEQEQLIPLEIPKDEPDSVDEINEENEET  226 (442)
T ss_dssp             CSSCCTTEEEEESCSGGGTTCT-TEEECCCCCCSTTCCCSCC--------------------------------------
T ss_pred             cCCCcceEEEEECCHHHhCCCC-CEEEcCCccccCCCCcccccccccccccccccccccccccccccccccccccccccC
Confidence             899999999999999999996 99999999999999874311            00 0     0               


Q ss_pred             --------c----------------------------------------------------ccC----------Ccccch
Q 044162          265 --------Q----------------------------------------------------MSD----------ESESDG  274 (369)
Q Consensus       265 --------~----------------------------------------------------~~d----------e~~~D~  274 (369)
                              .                                                    ..|          ..++|+
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~rpl~~~q~~l~~~~~~~~~~~~~l~d~D~  306 (442)
T 3ef1_A          227 PEYDSSNSSYAQDSSTIPEKTLLKDTFLQNREALEEQNKERVTALELQKSERPLAKQQNALLEDEGKPTPSHTLLHNRDH  306 (442)
T ss_dssp             --------------------------------CHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTSCCSCHHHHCSCCCCCC
T ss_pred             cccccccccccccccccchhhhhccccCccchhhHHHHHHhhhhhhhhhccCchhhHHHHhhhhhhccccccccccCCcH
Confidence                    0                                                    000          024699


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCC------CCCCcHHHHHHHHHHhhhcCceEEecccCCCCC----hhHHHHHHhcCCEE
Q 044162          275 ALANILRALKAVHALYFDNPGNH------AAGRDVRSCLAKIRSRILMGCTILFGDDDFEEL----PLTWSRAEEMGAIC  344 (369)
Q Consensus       275 ~L~~l~~~L~~ih~~ff~~~~~~------~~~~DVr~il~~~r~~VL~g~~ivFSg~~p~~~----p~lw~la~~~GA~v  344 (369)
                      +|..|.++|.+||++||+.++..      ...+||+.||+++|+++|+||+|+|||++|...    ..+|++|++|||+|
T Consensus       307 ~L~~l~~~L~~iH~~fy~~~d~~~~~~~~~~~~Dv~~il~~~k~~~L~G~~IvfSG~~p~~~~~~r~~l~~~~~~lGa~~  386 (442)
T 3ef1_A          307 ELERLEKVLKDIHAVYYEEENDISSRSGNHKHANVGLIIPKMKQKVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEV  386 (442)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCSCCSSSCCCCHHHHHHHHHHTTSTTCEEEEESSSCTTSCSTTSHHHHHHHTTTCEE
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccccCCCCcHHHHHHHHhhcccCCcEEEEecccCCCCCccHHHHHHHHHHcCCEE
Confidence            99999999999999999986432      235899999999999999999999999999853    39999999999999


Q ss_pred             EeccCCCceEEEecCCCcccccccC
Q 044162          345 TLVTDASVTHVVSSNTQSETFEWAE  369 (369)
Q Consensus       345 ~~~i~~~vTHvVa~~~gT~K~~~a~  369 (369)
                      +.+++++||||||.+.+|.|+++|+
T Consensus       387 ~~~vs~~vTHLVa~~~~t~K~~~A~  411 (442)
T 3ef1_A          387 VLDFSVPPTHLIAAKIRTEKVKKAV  411 (442)
T ss_dssp             CSSSSSCCSEEEECSCCCHHHHHHH
T ss_pred             eCCCCCCceEEEeCCCCCHHHHHHH
Confidence            9999999999999999999999984

>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.6e-60  Score=472.52  Aligned_cols=282  Identities=26%  Similarity=0.425  Sum_probs=232.7

Q ss_pred             HHHHhhhhhhhhhcCCceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEc------Cce
Q 044162           77 ISRLKKRNTKNLLRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIG------DNV  150 (369)
Q Consensus        77 a~~~~~~~~~~ll~~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~------~~~  150 (369)
                      .+|+++.+.+||+..+|++||||||||||||+..|....+.++         ...... ....++..|.+.      +++
T Consensus         2 ~~~~~~~~~~rl~~~~k~~LVlDLD~TLvhS~~~~~~~~w~~~---------~~~~~~-~~~~dv~~f~~~~~~~~~~~~   71 (372)
T 3ef0_A            2 LSRLESENVKRLRQEKRLSLIVDLDQTIIHATVDPTVGEWMSD---------PGNVNY-DVLRDVRSFNLQEGPSGYTSC   71 (372)
T ss_dssp             --CHHHHHHHHHHHHTCEEEEECCBTTTEEEECCTHHHHHHTC---------TTSTTT-GGGTTCEEEEEEETTTTEEEE
T ss_pred             hhhhhhHHHHHHHhCCCCEEEEcCCCCcccccCcCccchhhcc---------CCCCch-hhhhhhhceeeeeccCCceEE
Confidence            3678999999999999999999999999999887642111100         000000 002334444332      358


Q ss_pred             EEEEeCccHHHHHHHHhcCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCccccccccc-CCCCCcEEEEe
Q 044162          151 LLVKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKYLDLV-LGQENSIVIVD  229 (369)
Q Consensus       151 ~~vklRPgl~eFL~~ls~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~~~KdL~~l-~~~~~~vvIvD  229 (369)
                      +||++|||+++||+.++++|||+|||++++.||++|++.|||++.||.+|+++|++|+..++|||+++ ++++++|||||
T Consensus        72 ~~v~~RPg~~eFL~~l~~~yeivI~Tas~~~yA~~vl~~LDp~~~~f~~ri~sr~~~g~~~~KdL~~L~~~dl~~viiiD  151 (372)
T 3ef0_A           72 YYIKFRPGLAQFLQKISELYELHIYTMGTKAYAKEVAKIIDPTGKLFQDRVLSRDDSGSLAQKSLRRLFPCDTSMVVVID  151 (372)
T ss_dssp             EEEEECTTHHHHHHHHHTTEEEEEECSSCHHHHHHHHHHHCTTSCSSSSCEECTTTSSCSSCCCGGGTCSSCCTTEEEEE
T ss_pred             EEEEECcCHHHHHHHHhcCcEEEEEeCCcHHHHHHHHHHhccCCceeeeEEEEecCCCCcceecHHHhcCCCCceEEEEe
Confidence            99999999999999999999999999999999999999999999999999999999988789999976 89999999999


Q ss_pred             CCccccccCCCceEEeCcccccccccCCCCCcccc-------cc------------------------cCC---------
Q 044162          230 DTESVWGGRVENLITVGSYDFFKDKKKNDCKSYSE-------QM------------------------SDE---------  269 (369)
Q Consensus       230 D~~~~w~~~~~N~I~I~~y~fF~~~~~~~~~s~~e-------~~------------------------~de---------  269 (369)
                      |++.+|..|| |+|+|+||+||++.|+.+++.++.       +.                        .||         
T Consensus       152 d~~~~~~~~p-N~I~i~~~~~f~~~~d~n~~~lp~~~~~~~~~~~~~~~~~~~q~~~~p~~~~q~~l~~~e~~~~~~~~~  230 (372)
T 3ef0_A          152 DRGDVWDWNP-NLIKVVPYEFFVGIGDINSNFLSGNREALEEQNKERVTALELQKSERPLAKQQNALLEDEGKPTPSHTL  230 (372)
T ss_dssp             SCSGGGTTCT-TEEECCCCCCSTTCCCTTC--------CCGGGGHHHHHHHHHHHHHCHHHHHHHHHHHSCCSCSGGGCS
T ss_pred             CCHHHcCCCC-cEeeeCCccccCCcCccccccccccchhHHHhhhhhhhhhhhhhcccchhHHHHhhhccccccchhhcc
Confidence            9999999996 999999999999999865432211       00                        011         


Q ss_pred             -cccchHHHHHHHHHHHHHHHhcCCCCC------CCCCCcHHHHHHHHHHhhhcCceEEecccCCCC-C---hhHHHHHH
Q 044162          270 -SESDGALANILRALKAVHALYFDNPGN------HAAGRDVRSCLAKIRSRILMGCTILFGDDDFEE-L---PLTWSRAE  338 (369)
Q Consensus       270 -~~~D~~L~~l~~~L~~ih~~ff~~~~~------~~~~~DVr~il~~~r~~VL~g~~ivFSg~~p~~-~---p~lw~la~  338 (369)
                       .++|++|..++++|++||++||+.++.      ....+||+.+|+++|+++|+||+|+|||++|.. +   ..+|++|+
T Consensus       231 ~~d~D~~L~~~~~~L~~iH~~Ff~~~~~~~~~~~~~~~~dv~~ii~~lk~~~L~G~~ivfSG~~~~~~~~~~~~l~~l~~  310 (372)
T 3ef0_A          231 LHNRDHELERLEKVLKDIHAVYYEEENDISSRSGNHKHANVGLIIPKMKQKVLKGCRLLFSGVIPLGVDVLSSDIAKWAM  310 (372)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHTTTSTTCEEEEESSSCTTSCTTTSHHHHHHH
T ss_pred             ccCChHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHhhhcCCcEEEEecccCCCcchhHHHHHHHHH
Confidence             357999999999999999999998421      234689999999999999999999999999974 2   49999999


Q ss_pred             hcCCEEEeccCCCceEEEecCCCcccccccC
Q 044162          339 EMGAICTLVTDASVTHVVSSNTQSETFEWAE  369 (369)
Q Consensus       339 ~~GA~v~~~i~~~vTHvVa~~~gT~K~~~a~  369 (369)
                      +|||+|+.+++++||||||.+.+|.|+++|+
T Consensus       311 ~lGa~v~~~vs~~vTHLVa~~~~t~K~~~A~  341 (372)
T 3ef0_A          311 SFGAEVVLDFSVPPTHLIAAKIRTEKVKKAV  341 (372)
T ss_dssp             HTTCEEESSSSSCCSEEEECSCCCHHHHHHH
T ss_pred             HcCCEEeCcCCCCceEEEEcCCCchHHHHHH
Confidence            9999999999999999999999999999984

>3qle_A TIM50P; chaperone, mitochondrion, preprotein translocation; HET: 1PE; 1.83A {Saccharomyces cerevisiae EC1118}

Probab=100.00  E-value=2.7e-38  Score=289.43  Aligned_cols=157  Identities=23%  Similarity=0.320  Sum_probs=140.2

Q ss_pred             cCCceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHHHHHHHhcC
Q 044162           90 RMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEASRL  169 (369)
Q Consensus        90 ~~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~eFL~~ls~~  169 (369)
                      .++|++||||||+||||++..+.                                    +.+++++|||+++||+.++++
T Consensus        31 ~~~~~tLVLDLDeTLvh~~~~~~------------------------------------~~~~v~~RPgl~eFL~~l~~~   74 (204)
T 3qle_A           31 YQRPLTLVITLEDFLVHSEWSQK------------------------------------HGWRTAKRPGADYFLGYLSQY   74 (204)
T ss_dssp             -CCSEEEEEECBTTTEEEEEETT------------------------------------TEEEEEECTTHHHHHHHHTTT
T ss_pred             cCCCeEEEEeccccEEeeecccc------------------------------------CceeEEeCCCHHHHHHHHHhC
Confidence            47899999999999999987431                                    167899999999999999999


Q ss_pred             ccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccC---cccccccccCCCCCcEEEEeCCccccccCCCceEEeC
Q 044162          170 FEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQ---KERKYLDLVLGQENSIVIVDDTESVWGGRVENLITVG  246 (369)
Q Consensus       170 yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~---~~~KdL~~l~~~~~~vvIvDD~~~~w~~~~~N~I~I~  246 (369)
                      |||+|||++.+.||++|++.|||.+.+|.+|++ |++|..   .++|||+++++++++||||||++.+|..|++|+|+|+
T Consensus        75 yeivI~Tas~~~ya~~vl~~LDp~~~~f~~rl~-R~~c~~~~g~y~KdL~~Lgrdl~~vIiIDDsp~~~~~~p~N~I~I~  153 (204)
T 3qle_A           75 YEIVLFSSNYMMYSDKIAEKLDPIHAFVSYNLF-KEHCVYKDGVHIKDLSKLNRDLSKVIIIDTDPNSYKLQPENAIPME  153 (204)
T ss_dssp             EEEEEECSSCHHHHHHHHHHTSTTCSSEEEEEC-GGGSEEETTEEECCGGGSCSCGGGEEEEESCTTTTTTCGGGEEECC
T ss_pred             CEEEEEcCCcHHHHHHHHHHhCCCCCeEEEEEE-ecceeEECCeeeecHHHhCCChHHEEEEECCHHHHhhCccCceEee
Confidence            999999999999999999999999889988766 999864   4799999999999999999999999999999999999


Q ss_pred             cccccccccCCCCCcccccccCCcccchHHHHHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHH
Q 044162          247 SYDFFKDKKKNDCKSYSEQMSDESESDGALANILRALKAVHALYFDNPGNHAAGRDVRSCLAKIRS  312 (369)
Q Consensus       247 ~y~fF~~~~~~~~~s~~e~~~de~~~D~~L~~l~~~L~~ih~~ff~~~~~~~~~~DVr~il~~~r~  312 (369)
                      ||.                    ++.|.+|..|+++|+.|+.         ....|||++|++++.
T Consensus       154 ~~~--------------------~~~D~eL~~L~~~L~~L~~---------~~~~DVR~~L~~~~~  190 (204)
T 3qle_A          154 PWN--------------------GEADDKLVRLIPFLEYLAT---------QQTKDVRPILNSFED  190 (204)
T ss_dssp             CCC--------------------SSCCCHHHHHHHHHHHHHH---------TCCSCSHHHHTTSSC
T ss_pred             eEC--------------------CCCChhHHHHHHHHHHHhh---------cChHHHHHHHHHhcC
Confidence            995                    2346699999999999985         237899999998765

>2ght_A Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1; protein-peptide complex, HAD superfamily, hydrolase; HET: SEP; 1.80A {Homo sapiens} PDB: 2ghq_A* 3pgl_A* 1t9z_A* 1ta0_A* 3l0c_A 3l0y_A 3l0b_A* 2q5e_A

Probab=100.00  E-value=8.9e-35  Score=261.20  Aligned_cols=165  Identities=26%  Similarity=0.332  Sum_probs=141.7

Q ss_pred             hcCCceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcC--ceEEEEeCccHHHHHHHH
Q 044162           89 LRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGD--NVLLVKLRPFVRSFLEEA  166 (369)
Q Consensus        89 l~~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~--~~~~vklRPgl~eFL~~l  166 (369)
                      ...+|++||||||||||||+..+...                       ...++.+...|  ..+++++|||+++||+++
T Consensus        11 ~~~~k~~LVLDLD~TLvhs~~~~~~~-----------------------~d~~~~~~~~~~~~~~~v~~rPg~~efL~~l   67 (181)
T 2ght_A           11 QDSDKICVVINLDETLVHSSFKPVNN-----------------------ADFIIPVEIDGVVHQVYVLKRPHVDEFLQRM   67 (181)
T ss_dssp             GGTTSCEEEECCBTTTEEEESSCCSS-----------------------CSEEEEEEETTEEEEEEEEECTTHHHHHHHH
T ss_pred             ccCCCeEEEECCCCCeECCcccCCCC-----------------------ccceeeeeeCCeeEEEEEEeCCCHHHHHHHH
Confidence            45789999999999999998765310                       11123333333  268999999999999999


Q ss_pred             hcCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccC---cccccccccCCCCCcEEEEeCCccccccCCCceE
Q 044162          167 SRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQ---KERKYLDLVLGQENSIVIVDDTESVWGGRVENLI  243 (369)
Q Consensus       167 s~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~---~~~KdL~~l~~~~~~vvIvDD~~~~w~~~~~N~I  243 (369)
                      ++.|+|+|||++.+.||+++++.|||.+ +|..|++ |++|..   .+.|+|++++++++++|||||++..|..++.|+|
T Consensus        68 ~~~~~i~I~T~~~~~~a~~vl~~ld~~~-~f~~~~~-rd~~~~~k~~~~k~L~~Lg~~~~~~vivdDs~~~~~~~~~ngi  145 (181)
T 2ght_A           68 GELFECVLFTASLAKYADPVADLLDKWG-AFRARLF-RESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAV  145 (181)
T ss_dssp             HHHSEEEEECSSCHHHHHHHHHHHCTTC-CEEEEEC-GGGSEEETTEEECCGGGTCSCGGGEEEECSCGGGGTTCTTSBC
T ss_pred             HhCCCEEEEcCCCHHHHHHHHHHHCCCC-cEEEEEe-ccCceecCCcEeccHHHhCCCcceEEEEeCCHHHhccCcCCEe
Confidence            9999999999999999999999999997 8987665 999863   4799999999999999999999999999999999


Q ss_pred             EeCcccccccccCCCCCcccccccCCcccchHHHHHHHHHHHHHHHhcCCCCCCCCCCcHHHHHH
Q 044162          244 TVGSYDFFKDKKKNDCKSYSEQMSDESESDGALANILRALKAVHALYFDNPGNHAAGRDVRSCLA  308 (369)
Q Consensus       244 ~I~~y~fF~~~~~~~~~s~~e~~~de~~~D~~L~~l~~~L~~ih~~ff~~~~~~~~~~DVr~il~  308 (369)
                      +|.+|.     +              +.+|++|..|+++|+.|+.           .+|||++|+
T Consensus       146 ~i~~~~-----~--------------~~~D~eL~~l~~~L~~l~~-----------~~DVr~~l~  180 (181)
T 2ght_A          146 PVASWF-----D--------------NMSDTELHDLLPFFEQLSR-----------VDDVYSVLR  180 (181)
T ss_dssp             CCCCCS-----S--------------CTTCCHHHHHHHHHHHHTT-----------CSCTHHHHC
T ss_pred             Eecccc-----C--------------CCChHHHHHHHHHHHHhCc-----------CccHHHHhh
Confidence            999996     1              5788999999999999986           799999985

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}

Probab=99.98  E-value=3.5e-33  Score=271.65  Aligned_cols=157  Identities=17%  Similarity=0.224  Sum_probs=135.7

Q ss_pred             hcCCceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHHHHHHHhc
Q 044162           89 LRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEASR  168 (369)
Q Consensus        89 l~~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~eFL~~ls~  168 (369)
                      .+.+|++|||||||||||+.....                                     .+++.+|||+++||+.+++
T Consensus       136 ~~~~k~tLVLDLDeTLvh~~~~~~-------------------------------------~~~~~~RP~l~eFL~~l~~  178 (320)
T 3shq_A          136 PREGKKLLVLDIDYTLFDHRSPAE-------------------------------------TGTELMRPYLHEFLTSAYE  178 (320)
T ss_dssp             CCTTCEEEEECCBTTTBCSSSCCS-------------------------------------SHHHHBCTTHHHHHHHHHH
T ss_pred             CcCCCcEEEEeccccEEcccccCC-------------------------------------CcceEeCCCHHHHHHHHHh
Confidence            466899999999999999975220                                     3468899999999999999


Q ss_pred             CccEEEecCCcHHHHHHHHHHhCCCCCc-ccceEEeecccc---------C-ccccccccc-----CCCCCcEEEEeCCc
Q 044162          169 LFEISVCTLGNREYATRAVKLLDPDCKY-FNSRIITREDFK---------Q-KERKYLDLV-----LGQENSIVIVDDTE  232 (369)
Q Consensus       169 ~yEi~I~T~g~~~YA~~i~~~lDp~~~~-f~~Ri~srd~~~---------~-~~~KdL~~l-----~~~~~~vvIvDD~~  232 (369)
                      +|||+|||++.+.||++|++.|||.+.+ |.+|++ |++|.         . .++|||+++     ++++++||||||++
T Consensus       179 ~yeivIfTas~~~ya~~vld~Ld~~~~~~~~~~~~-r~~~~~~~~~~~~~g~~~vKdLs~Lw~~~p~rdl~~tIiIDdsp  257 (320)
T 3shq_A          179 DYDIVIWSATSMRWIEEKMRLLGVASNDNYKVMFY-LDSTAMISVHVPERGVVDVKPLGVIWALYKQYNSSNTIMFDDIR  257 (320)
T ss_dssp             HEEEEEECSSCHHHHHHHHHHTTCTTCSSCCCCEE-ECGGGCEEEEETTTEEEEECCHHHHHHHCTTCCGGGEEEEESCG
T ss_pred             CCEEEEEcCCcHHHHHHHHHHhCCCCCcceeEEEE-EcCCccccccccCCCCEEEEEhHHhhcccCCCChhHEEEEeCCh
Confidence            9999999999999999999999999875 778888 77764         1 379999999     89999999999999


Q ss_pred             cccccCCCceEEeCcccccccccCCCCCcccccccCCcccchHHHHHHHHHHHHH-HHhcCCCCCCCCCCcHHHHHHH
Q 044162          233 SVWGGRVENLITVGSYDFFKDKKKNDCKSYSEQMSDESESDGALANILRALKAVH-ALYFDNPGNHAAGRDVRSCLAK  309 (369)
Q Consensus       233 ~~w~~~~~N~I~I~~y~fF~~~~~~~~~s~~e~~~de~~~D~~L~~l~~~L~~ih-~~ff~~~~~~~~~~DVr~il~~  309 (369)
                      .+|..||+|+|+|.||.... .+              +.+|++|..|+++|+.|+ .           .+|||+++++
T Consensus       258 ~~~~~~p~NgI~I~~~~~~~-~~--------------~~~D~eL~~L~~~L~~L~~~-----------~~DVr~~~~~  309 (320)
T 3shq_A          258 RNFLMNPKSGLKIRPFRQAH-LN--------------RGTDTELLKLSDYLRKIAHH-----------CPDFNSLNHR  309 (320)
T ss_dssp             GGGTTSGGGEEECCCCCCHH-HH--------------TTTCCHHHHHHHHHHHHHHH-----------CSCGGGCCGG
T ss_pred             HHhccCcCceEEeCeEcCCC-CC--------------CCccHHHHHHHHHHHHHhcc-----------CcchhHHHHH
Confidence            99999999999999996110 01              368999999999999999 5           7899998764

>2hhl_A CTD small phosphatase-like protein; CTD phosphatase, keggins anion, structural genomics, PSI, protein structure initiative; HET: KEG; 2.10A {Homo sapiens}

Probab=99.97  E-value=2.9e-31  Score=241.23  Aligned_cols=155  Identities=26%  Similarity=0.337  Sum_probs=132.7

Q ss_pred             cCCceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcC--ceEEEEeCccHHHHHHHHh
Q 044162           90 RMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGD--NVLLVKLRPFVRSFLEEAS  167 (369)
Q Consensus        90 ~~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~--~~~~vklRPgl~eFL~~ls  167 (369)
                      ..+|++||||||||||||+..+...                       ...++.+...+  ..+++++|||+++||++++
T Consensus        25 ~~~k~~LVLDLD~TLvhs~~~~~~~-----------------------~d~~~~~~~~g~~~~~~v~~RPgv~efL~~l~   81 (195)
T 2hhl_A           25 DYGKKCVVIDLDETLVHSSFKPISN-----------------------ADFIVPVEIDGTIHQVYVLKRPHVDEFLQRMG   81 (195)
T ss_dssp             GTTCCEEEECCBTTTEEEESSCCTT-----------------------CSEEEEEEETTEEEEEEEEECTTHHHHHHHHH
T ss_pred             cCCCeEEEEccccceEcccccCCCC-----------------------ccceeeeecCCceeeEEEEeCcCHHHHHHHHH
Confidence            5789999999999999998765310                       11123333333  2689999999999999999


Q ss_pred             cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccC---cccccccccCCCCCcEEEEeCCccccccCCCceEE
Q 044162          168 RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQ---KERKYLDLVLGQENSIVIVDDTESVWGGRVENLIT  244 (369)
Q Consensus       168 ~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~---~~~KdL~~l~~~~~~vvIvDD~~~~w~~~~~N~I~  244 (369)
                      +.|+|+|||++.+.||+++++.|||.+ +|..|+ +|++|..   .+.|+|++++++++++|||||++..|..++.|+|+
T Consensus        82 ~~~~i~I~Tss~~~~a~~vl~~ld~~~-~f~~~l-~rd~~~~~k~~~lK~L~~Lg~~~~~~vivDDs~~~~~~~~~ngi~  159 (195)
T 2hhl_A           82 QLFECVLFTASLAKYADPVADLLDRWG-VFRARL-FRESCVFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVP  159 (195)
T ss_dssp             HHSEEEEECSSCHHHHHHHHHHHCCSS-CEEEEE-CGGGCEEETTEEECCGGGSSSCGGGEEEEESCGGGGTTCGGGEEE
T ss_pred             cCCeEEEEcCCCHHHHHHHHHHhCCcc-cEEEEE-EcccceecCCceeeeHhHhCCChhHEEEEECCHHHhhhCccCccE
Confidence            999999999999999999999999996 897755 5998864   47999999999999999999999999999999999


Q ss_pred             eCcccccccccCCCCCcccccccCCcccchHHHHHHHHHHHHHH
Q 044162          245 VGSYDFFKDKKKNDCKSYSEQMSDESESDGALANILRALKAVHA  288 (369)
Q Consensus       245 I~~y~fF~~~~~~~~~s~~e~~~de~~~D~~L~~l~~~L~~ih~  288 (369)
                      |.+|.                   .+.+|++|..|+++|+.|+.
T Consensus       160 i~~~~-------------------~~~~D~eL~~L~~~L~~l~~  184 (195)
T 2hhl_A          160 VQSWF-------------------DDMTDTELLDLIPFFEGLSR  184 (195)
T ss_dssp             CCCCS-------------------SCTTCCHHHHHHHHHHHHHC
T ss_pred             Eeeec-------------------CCCChHHHHHHHHHHHHHHh
Confidence            99996                   15789999999999999986

>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.69  E-value=7.8e-09  Score=87.23  Aligned_cols=58  Identities=16%  Similarity=0.149  Sum_probs=52.6

Q ss_pred             HHhhhcCceEEecccCCCCChhHHHHHHhcCCEEEeccCCCceEEEecCCCccccccc
Q 044162          311 RSRILMGCTILFGDDDFEELPLTWSRAEEMGAICTLVTDASVTHVVSSNTQSETFEWA  368 (369)
Q Consensus       311 r~~VL~g~~ivFSg~~p~~~p~lw~la~~~GA~v~~~i~~~vTHvVa~~~gT~K~~~a  368 (369)
                      ..++|+||.|+|||..+..+..++++++++||+++.+++..||||||....+.|+++|
T Consensus        19 ~~~~f~g~~i~itG~~~~~r~~l~~~i~~~Gg~v~~~~s~~~ThLI~~~~~~~K~~~A   76 (129)
T 2d8m_A           19 LGKILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQV   76 (129)
T ss_dssp             HTTTSTTEEEEEESCCTTHHHHHHHHHHHTTEEEESSCCTTCCEEEESSSSCHHHHHH
T ss_pred             ccccCCCeEEEEeCCCcHHHHHHHHHHHHcCCEEeCCcCCCCeEEEecCCCChHHHHH
Confidence            4568999999999998544559999999999999999999999999999999999887

>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}

Probab=98.59  E-value=1.6e-08  Score=83.52  Aligned_cols=67  Identities=18%  Similarity=0.092  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHhhhcCceEEecccCCCCChhHHHHHHhcCCEEEeccCCCceEEEecCCCcccccccC
Q 044162          303 VRSCLAKIRSRILMGCTILFGDDDFEELPLTWSRAEEMGAICTLVTDASVTHVVSSNTQSETFEWAE  369 (369)
Q Consensus       303 Vr~il~~~r~~VL~g~~ivFSg~~p~~~p~lw~la~~~GA~v~~~i~~~vTHvVa~~~gT~K~~~a~  369 (369)
                      =|+-+.++|-.+|+||.|.|||+.+.++..++++.+++||++..++++.+||||+....+.|++.|+
T Consensus        10 ~~~~~~~~~~p~F~g~~Ic~sGf~~~er~~l~~~i~~~GG~~~~~l~~~cTHLV~~~~~~~K~~~A~   76 (112)
T 3l46_A           10 GRENLYFQGVPPFQDCILSFLGFSDEEKTNMEEMTEMQGGKYLPLGDERCTHLVVEENIVKDLPFEP   76 (112)
T ss_dssp             --------CCCTTTTCEECEESCCHHHHHHHHHHHHHTTCEECCTTCTTCSEEEECTTTBSSCSSCC
T ss_pred             ccccccccCCCccCCeEEEEeCCCHHHHHHHHHHHHHcCCEECcccCCCceEEEecCCchhhHHHHH
Confidence            4566778999999999999999655455599999999999999999999999999999888888763

>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.59  E-value=7.9e-09  Score=84.78  Aligned_cols=60  Identities=17%  Similarity=0.166  Sum_probs=53.0

Q ss_pred             HHHhhhcCceEEecccCCCCChhHHHHHHhcCCEEEeccCCCceEEEecCCCcccccccC
Q 044162          310 IRSRILMGCTILFGDDDFEELPLTWSRAEEMGAICTLVTDASVTHVVSSNTQSETFEWAE  369 (369)
Q Consensus       310 ~r~~VL~g~~ivFSg~~p~~~p~lw~la~~~GA~v~~~i~~~vTHvVa~~~gT~K~~~a~  369 (369)
                      +|-.+|+||.|+|||+-+..+..++++++++||+++.++++.+||||+....+.|+++|+
T Consensus         8 ~~~~~F~g~~i~~sg~~~~~r~~l~~~i~~~GG~~~~~~~~~~THLV~~~~~~~K~~~a~   67 (109)
T 2cou_A            8 FKVPPFQDCILSFLGFSDEEKHSMEEMTEMQGGSYLPVGDERCTHLIVEENTVKDLPFEP   67 (109)
T ss_dssp             SCCCTTTTCBEEEESSCHHHHHHHHHHHHHHTCBCCCTTCTTCSEEEECTTTCSSCSSCC
T ss_pred             ccCCcCCCeEEEecCCCHHHHHHHHHHHHHcCCEEecccCCCccEEEEeCCccHHHHHHH
Confidence            466799999999999655445599999999999999999999999999999999998874

>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}

Probab=98.46  E-value=1.2e-07  Score=74.27  Aligned_cols=57  Identities=19%  Similarity=0.096  Sum_probs=47.2

Q ss_pred             HHhhhcCceEEecccCCCCChhHHHHHHhcCCEEEeccC--CCceEEEecCCCcccccc
Q 044162          311 RSRILMGCTILFGDDDFEELPLTWSRAEEMGAICTLVTD--ASVTHVVSSNTQSETFEW  367 (369)
Q Consensus       311 r~~VL~g~~ivFSg~~p~~~p~lw~la~~~GA~v~~~i~--~~vTHvVa~~~gT~K~~~  367 (369)
                      ..++|+||.|+|+|........++++++++||+++.+++  +.+|||||.+..+.|+..
T Consensus         4 ~~~~f~g~~~~i~g~~~~~~~~l~~~i~~~GG~~~~~~~~~~~~THlI~~~~~~~K~~~   62 (92)
T 4id3_A            4 SSKIFKNCVIYINGYTKPGRLQLHEMIVLHGGKFLHYLSSKKTVTHIVASNLPLKKRIE   62 (92)
T ss_dssp             --CTTTTCEEEECSCCSSCHHHHHHHHHHTTCEEESSCCCTTTCCEEECSCCCHHHHHH
T ss_pred             cccccCCEEEEEeCCCCcCHHHHHHHHHHCCCEEEEEecCCCceEEEEecCCCHHHHHH
Confidence            357999999999995433344899999999999999999  899999999988888654

>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens}

Probab=98.29  E-value=5.5e-07  Score=71.58  Aligned_cols=58  Identities=14%  Similarity=0.105  Sum_probs=49.6

Q ss_pred             HhhhcCceEEecccCCCCChhHHHHHHhcCCEEEeccC-CCceEEEecCCCcccccccC
Q 044162          312 SRILMGCTILFGDDDFEELPLTWSRAEEMGAICTLVTD-ASVTHVVSSNTQSETFEWAE  369 (369)
Q Consensus       312 ~~VL~g~~ivFSg~~p~~~p~lw~la~~~GA~v~~~i~-~~vTHvVa~~~gT~K~~~a~  369 (369)
                      ..+|+||.|.+||........++++++++||++..+++ +.+||+||.+..+.|++.|+
T Consensus        10 ~~lF~g~~~~isg~~~~~~~~L~~~i~~~GG~~~~~~~~~~~THlI~~~~~~~k~~~~~   68 (97)
T 2ebw_A           10 STIFSGVAIYVNGYTDPSAEELRKLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELK   68 (97)
T ss_dssp             CCTTTTCEEEECSSCSSCHHHHHHHHHHTTCEECSSCCSSSCCEEECSCCCTTHHHHTS
T ss_pred             CCCCCCeEEEEeCCCcccHHHHHHHHHHcCCEEeeecCCCCCEEEEecCCChHHHHHhc
Confidence            46899999999997544445999999999999998877 68999999999889987763

>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A*

Probab=98.29  E-value=3.2e-07  Score=75.02  Aligned_cols=60  Identities=18%  Similarity=0.148  Sum_probs=49.7

Q ss_pred             HHHHhhhcCceEEecccCCCC---C-hhHHHHHHhcCCEEEeccCCCceEEEecCCCccccccc
Q 044162          309 KIRSRILMGCTILFGDDDFEE---L-PLTWSRAEEMGAICTLVTDASVTHVVSSNTQSETFEWA  368 (369)
Q Consensus       309 ~~r~~VL~g~~ivFSg~~p~~---~-p~lw~la~~~GA~v~~~i~~~vTHvVa~~~gT~K~~~a  368 (369)
                      +++..+|+||.+.|+..-..+   + ..++.+++++||+|+.+++..|||||+.+.++.|++.|
T Consensus         2 ~~~~p~f~g~vvyvd~~~~~g~~~~s~~l~~~l~~~GA~v~~~l~~~vTHvV~~~~~~~~~~~A   65 (107)
T 3pa6_A            2 HMAAPILKDVVAYVEVWSSNGTENYSKTFTTQLVDMGAKVSKTFNKQVTHVIFKDGYQSTWDKA   65 (107)
T ss_dssp             --CCCTTTTCEEEEEEBCTTSCCBCHHHHHHHHHHTTCEECSSCCTTCCEEEEESCCHHHHHHH
T ss_pred             CccccccCCEEEEEeccCCCChhhHHHHHHHHHHHcCCEEecccCCCccEEEEeCCCChHHHHH
Confidence            456789999999998765432   2 28899999999999999999999999999888887766

>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A

Probab=98.21  E-value=8.8e-07  Score=77.80  Aligned_cols=93  Identities=17%  Similarity=0.039  Sum_probs=65.7

Q ss_pred             EEEeCccHHHHHHHHh-cCccEEEecCCc-HHHHHHHHHHhCCCCCcccceEEeeccccCcccccccccCCCCCcEEEEe
Q 044162          152 LVKLRPFVRSFLEEAS-RLFEISVCTLGN-REYATRAVKLLDPDCKYFNSRIITREDFKQKERKYLDLVLGQENSIVIVD  229 (369)
Q Consensus       152 ~vklRPgl~eFL~~ls-~~yEi~I~T~g~-~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~~~KdL~~l~~~~~~vvIvD  229 (369)
                      .+.+.||+.++|+.+. +.+.++|.|++. +.++..+++.++... +|..-+.........+.+-++.++.+.+.+++|+
T Consensus        66 ~~~~~~g~~e~L~~L~~~G~~v~ivT~~~~~~~~~~~l~~~gl~~-~f~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ig  144 (187)
T 2wm8_A           66 DVRLYPEVPEVLKRLQSLGVPGAAASRTSEIEGANQLLELFDLFR-YFVHREIYPGSKITHFERLQQKTGIPFSQMIFFD  144 (187)
T ss_dssp             EECCCTTHHHHHHHHHHHTCCEEEEECCSCHHHHHHHHHHTTCTT-TEEEEEESSSCHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred             ccCcchhHHHHHHHHHHCCceEEEEeCCCChHHHHHHHHHcCcHh-hcceeEEEeCchHHHHHHHHHHcCCChHHEEEEe
Confidence            4678999999999997 569999999999 799999999998774 6754222211111123344566778889999999


Q ss_pred             CCccccccCCCceEEe
Q 044162          230 DTESVWGGRVENLITV  245 (369)
Q Consensus       230 D~~~~w~~~~~N~I~I  245 (369)
                      |++.-.......|+.+
T Consensus       145 D~~~Di~~a~~aG~~~  160 (187)
T 2wm8_A          145 DERRNIVDVSKLGVTC  160 (187)
T ss_dssp             SCHHHHHHHHTTTCEE
T ss_pred             CCccChHHHHHcCCEE
Confidence            9975543333455544

>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5

Probab=98.14  E-value=1.1e-06  Score=74.16  Aligned_cols=59  Identities=17%  Similarity=0.189  Sum_probs=47.6

Q ss_pred             HHHHHHHhhhcCceEEecccCCCCChhHHHHHHhcCCEEEeccCCCceEEEecCCCcccc
Q 044162          306 CLAKIRSRILMGCTILFGDDDFEELPLTWSRAEEMGAICTLVTDASVTHVVSSNTQSETF  365 (369)
Q Consensus       306 il~~~r~~VL~g~~ivFSg~~p~~~p~lw~la~~~GA~v~~~i~~~vTHvVa~~~gT~K~  365 (369)
                      .+.+.+..+|+||.|+|+|.-......++++++++||+++.++++.+||||+.+. +.++
T Consensus        32 ~~~~~~~~lF~g~~i~i~G~~~~~~~~L~~~i~~~Gg~v~~~l~~~vTHvI~~~~-~~~~   90 (132)
T 1wf6_A           32 SAFQAPEDLLDGCRIYLCGFSGRKLDKLRRLINSGGGVRFNQLNEDVTHVIVGDY-DDEL   90 (132)
T ss_dssp             GGCCCCTTTTTTCEEEEESCCSHHHHHHHHHHHHTTCEEESSCCSSCCEEEESSC-CSHH
T ss_pred             ccccccccccCCEEEEEECCChHHHHHHHHHHHHCCCEEeCcCCCCCeEEEECCc-hHHH
Confidence            3455667899999999999743333489999999999999999999999999874 4433

>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*

Probab=98.14  E-value=7.1e-07  Score=85.58  Aligned_cols=57  Identities=19%  Similarity=0.165  Sum_probs=52.3

Q ss_pred             HhhhcCceEEecccCCCCChhHHHHHHhcCCEEEeccCCCceEEEecCCCccccccc
Q 044162          312 SRILMGCTILFGDDDFEELPLTWSRAEEMGAICTLVTDASVTHVVSSNTQSETFEWA  368 (369)
Q Consensus       312 ~~VL~g~~ivFSg~~p~~~p~lw~la~~~GA~v~~~i~~~vTHvVa~~~gT~K~~~a  368 (369)
                      ..+|+|+.|+|||+.|..+..+..+++++||+++.+++++||||||...+|.|+++|
T Consensus       103 ~~~l~g~~~~~tG~~~~~r~~l~~~i~~~GG~v~~~~t~~tTHLI~~~~~t~Ky~~A  159 (298)
T 3olc_X          103 NMVMSDVTISCTSLEKEKREEVHKYVQMMGGRVYRDLNVSVTHLIAGEVGSKKYLVA  159 (298)
T ss_dssp             CCTTTTCEEEEESCCHHHHHHHHHHHHHTTCEECSSCCTTCCEEEESSSCSHHHHHH
T ss_pred             ccccCCeEEEeCCCcHHhHHHHHHHHHHCCCEEecCcCCCeeEEEEeCCCChHHHHH
Confidence            358999999999998865559999999999999999999999999999999999887

>3kbb_A Phosphorylated carbohydrates phosphatase TM_1254; hydrolase, arbohydrate metabolism, COBA magnesium, manganese, metal-binding, nickel; HET: MSE GOL; 1.74A {Thermotoga maritima MSB8}

Probab=98.13  E-value=2.4e-06  Score=75.52  Aligned_cols=83  Identities=23%  Similarity=0.286  Sum_probs=67.0

Q ss_pred             EEEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCc
Q 044162          152 LVKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENS  224 (369)
Q Consensus       152 ~vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~  224 (369)
                      ..+..||+.++|+.+. ..+.+.|.|++.+.++..+++.++.. .+|. .+++.++....      +.+-++.++.+++.
T Consensus        82 ~~~~~pg~~~~l~~L~~~g~~~~i~tn~~~~~~~~~l~~~~l~-~~fd-~~~~~~~~~~~KP~p~~~~~a~~~lg~~p~e  159 (216)
T 3kbb_A           82 LLKENPGVREALEFVKSKRIKLALATSTPQREALERLRRLDLE-KYFD-VMVFGDQVKNGKPDPEIYLLVLERLNVVPEK  159 (216)
T ss_dssp             HCCBCTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTTCG-GGCS-EEECGGGSSSCTTSTHHHHHHHHHHTCCGGG
T ss_pred             hcccCccHHHHHHHHHHcCCCcccccCCcHHHHHHHHHhcCCC-cccc-ccccccccCCCcccHHHHHHHHHhhCCCccc
Confidence            3567899999999996 67999999999999999999999987 4785 46656665432      45557778889999


Q ss_pred             EEEEeCCccccc
Q 044162          225 IVIVDDTESVWG  236 (369)
Q Consensus       225 vvIvDD~~~~w~  236 (369)
                      +|+|+|++.-..
T Consensus       160 ~l~VgDs~~Di~  171 (216)
T 3kbb_A          160 VVVFEDSKSGVE  171 (216)
T ss_dssp             EEEEECSHHHHH
T ss_pred             eEEEecCHHHHH
Confidence            999999985443

>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A

Probab=98.10  E-value=2.5e-06  Score=69.42  Aligned_cols=56  Identities=11%  Similarity=0.033  Sum_probs=48.8

Q ss_pred             hhhcCceEEecccCCCC-ChhHHHHHHhcCCEEEeccCCCceEEEecCCCccccccc
Q 044162          313 RILMGCTILFGDDDFEE-LPLTWSRAEEMGAICTLVTDASVTHVVSSNTQSETFEWA  368 (369)
Q Consensus       313 ~VL~g~~ivFSg~~p~~-~p~lw~la~~~GA~v~~~i~~~vTHvVa~~~gT~K~~~a  368 (369)
                      .+|.||++.|||.+|.. ...++++..+||++|....+++|||+|+.+..+.|++.|
T Consensus         6 d~F~g~~f~l~~~~p~~~r~~l~ryiia~GG~v~~~~~~~vTHvIt~~~~d~~~~~a   62 (104)
T 3pc6_A            6 DFFEGKHFFLYGEFPGDERRRLIRYVTAFNGELEDYMNERVQFVITAQEWDPNFEEA   62 (104)
T ss_dssp             CTTTTCEEEEESCCSTTHHHHHHHHHHHTTCEECSSCCTTCCEEEESSCCCHHHHHH
T ss_pred             hhhCCeEEEEcCCCcHHHHHHHHHHHHHcCCEEEcccCCCceEEEeCCCCChhHHHH
Confidence            37899999999999843 348999999999999998999999999999988887654

>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*

Probab=98.08  E-value=7.1e-07  Score=85.58  Aligned_cols=62  Identities=15%  Similarity=0.179  Sum_probs=54.9

Q ss_pred             HHHHHhhhcCceEEecccCCCCChhHHHHHHhcCCEEEeccC-CCceEEEecCCCcccccccC
Q 044162          308 AKIRSRILMGCTILFGDDDFEELPLTWSRAEEMGAICTLVTD-ASVTHVVSSNTQSETFEWAE  369 (369)
Q Consensus       308 ~~~r~~VL~g~~ivFSg~~p~~~p~lw~la~~~GA~v~~~i~-~~vTHvVa~~~gT~K~~~a~  369 (369)
                      ...+..+|+||.|+|||+.+..+..++.+++++||+++.+++ +.+|||||.+..+.|++.|+
T Consensus       193 ~~~~~~~f~g~~i~~tG~~~~~r~~l~~li~~~GG~~~~~ls~~~~THLI~~~~~g~K~~~A~  255 (298)
T 3olc_X          193 EDFKCPIFLGCIICVTGLCGLDRKEVQQLTVKHGGQYMGQLKMNECTHLIVQEPKGQKYECAK  255 (298)
T ss_dssp             GGGBCCTTTTCEEEECSCCHHHHHHHHHHHHHTTCEECSSCCTTTCCEEECSSSCSHHHHHHH
T ss_pred             ccccccccCCeEEEEeCCCCccHHHHHHHHHHcCCEEeceecCCCceEEEEeCCCchHHHHHH
Confidence            456788999999999998765555999999999999999999 79999999999999998773

>2fpr_A Histidine biosynthesis bifunctional protein HISB; histidinola phosphate phosphatase, bifunctional enzyme structural genomics; 1.70A {Escherichia coli} SCOP: c.108.1.19 PDB: 2fps_A 2fpu_A* 2fpx_A 2fpw_A*

Probab=98.04  E-value=1.3e-05  Score=70.14  Aligned_cols=121  Identities=14%  Similarity=0.103  Sum_probs=76.3

Q ss_pred             hcCCceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHHHHHHHhc
Q 044162           89 LRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEASR  168 (369)
Q Consensus        89 l~~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~eFL~~ls~  168 (369)
                      ..++-.++++|+|+||+......                  |....               .-.+++.||+.++|+.+.+
T Consensus        10 ~~~~~k~~~~D~Dgtl~~~~~~~------------------~~~~~---------------~~~~~~~pg~~e~L~~L~~   56 (176)
T 2fpr_A           10 HGSSQKYLFIDRDGTLISEPPSD------------------FQVDR---------------FDKLAFEPGVIPQLLKLQK   56 (176)
T ss_dssp             ---CCEEEEECSBTTTBCCC--C------------------CCCCS---------------GGGCCBCTTHHHHHHHHHH
T ss_pred             cCCcCcEEEEeCCCCeEcCCCCC------------------cCcCC---------------HHHCcCCccHHHHHHHHHH
Confidence            35677889999999999764210                  00000               1124578999999999985


Q ss_pred             -CccEEEecCC---------------cHHHHHHHHHHhCCCCCcccceEEe----eccccC------cccccccccCCCC
Q 044162          169 -LFEISVCTLG---------------NREYATRAVKLLDPDCKYFNSRIIT----REDFKQ------KERKYLDLVLGQE  222 (369)
Q Consensus       169 -~yEi~I~T~g---------------~~~YA~~i~~~lDp~~~~f~~Ri~s----rd~~~~------~~~KdL~~l~~~~  222 (369)
                       .|.++|.|++               .+.++..+++.++..   |..-+++    .+++..      .+.+-++.++.+.
T Consensus        57 ~G~~l~i~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~---fd~v~~s~~~~~~~~~~~KP~p~~~~~~~~~~gi~~  133 (176)
T 2fpr_A           57 AGYKLVMITNQDGLGTQSFPQADFDGPHNLMMQIFTSQGVQ---FDEVLICPHLPADECDCRKPKVKLVERYLAEQAMDR  133 (176)
T ss_dssp             TTEEEEEEEECTTTTBTTBCHHHHHHHHHHHHHHHHHTTCC---EEEEEEECCCGGGCCSSSTTSCGGGGGGC----CCG
T ss_pred             CCCEEEEEECCccccccccchHhhhhhHHHHHHHHHHcCCC---eeEEEEcCCCCcccccccCCCHHHHHHHHHHcCCCH
Confidence             6999999999               688999999988765   6433344    244332      1334456667788


Q ss_pred             CcEEEEeCCccccccCCCceEEe
Q 044162          223 NSIVIVDDTESVWGGRVENLITV  245 (369)
Q Consensus       223 ~~vvIvDD~~~~w~~~~~N~I~I  245 (369)
                      +.+++|+|++.-.......++..
T Consensus       134 ~~~l~VGD~~~Di~~A~~aG~~~  156 (176)
T 2fpr_A          134 ANSYVIGDRATDIQLAENMGING  156 (176)
T ss_dssp             GGCEEEESSHHHHHHHHHHTSEE
T ss_pred             HHEEEEcCCHHHHHHHHHcCCeE
Confidence            99999999984443333445544

>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2

Probab=98.03  E-value=2.5e-06  Score=67.85  Aligned_cols=57  Identities=16%  Similarity=0.095  Sum_probs=51.0

Q ss_pred             hhhcCceEEecccCCCCChhHHHHHHhcCCEEEeccCCCceEEEecCCCcccccccC
Q 044162          313 RILMGCTILFGDDDFEELPLTWSRAEEMGAICTLVTDASVTHVVSSNTQSETFEWAE  369 (369)
Q Consensus       313 ~VL~g~~ivFSg~~p~~~p~lw~la~~~GA~v~~~i~~~vTHvVa~~~gT~K~~~a~  369 (369)
                      ..|.|.+|||+|.++..+..+..+++++||.+...++.+|||||+......|.+.|+
T Consensus         6 ~~l~G~~~v~TG~l~~~R~e~~~~i~~~Gg~v~~sVskkt~~LV~g~~~gsK~~kA~   62 (92)
T 1l7b_A            6 EALKGLTFVITGELSRPREEVKALLRRLGAKVTDSVSRKTSYLVVGENPGSKLEKAR   62 (92)
T ss_dssp             CSSTTCEEECSTTTTSCHHHHHHHHHHTTCEEESCCSSSCCCBEECSSSSTTHHHHH
T ss_pred             CCcCCcEEEEecCCCCCHHHHHHHHHHcCCEEeCcccCCeeEEEeCCCCChHHHHHH
Confidence            469999999999998744588999999999999999999999999988889988773

>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes}

Probab=97.96  E-value=4.7e-06  Score=73.27  Aligned_cols=77  Identities=21%  Similarity=0.175  Sum_probs=60.9

Q ss_pred             EEeCccHHHHHHHHhc-CccEEEecCCcH---HHHHHHHHHhCCCCCcccceEEeeccc----cC------ccccccccc
Q 044162          153 VKLRPFVRSFLEEASR-LFEISVCTLGNR---EYATRAVKLLDPDCKYFNSRIITREDF----KQ------KERKYLDLV  218 (369)
Q Consensus       153 vklRPgl~eFL~~ls~-~yEi~I~T~g~~---~YA~~i~~~lDp~~~~f~~Ri~srd~~----~~------~~~KdL~~l  218 (369)
                      +.+.||+.++|+.+.+ .+.++|.|++..   .++..+++.++... +|. .+++.++.    ..      .+.+-++.+
T Consensus        33 ~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~~~~l~~~gl~~-~fd-~i~~~~~~~~~~~~~KP~p~~~~~~~~~~  110 (189)
T 3ib6_A           33 VVLRKNAKETLEKVKQLGFKQAILSNTATSDTEVIKRVLTNFGIID-YFD-FIYASNSELQPGKMEKPDKTIFDFTLNAL  110 (189)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHTTCGG-GEE-EEEECCTTSSTTCCCTTSHHHHHHHHHHH
T ss_pred             ceeCcCHHHHHHHHHHCCCEEEEEECCCccchHHHHHHHHhcCchh-heE-EEEEccccccccCCCCcCHHHHHHHHHHc
Confidence            5678999999999985 599999999987   99999999998874 785 56666653    11      133445667


Q ss_pred             CCCCCcEEEEeCC
Q 044162          219 LGQENSIVIVDDT  231 (369)
Q Consensus       219 ~~~~~~vvIvDD~  231 (369)
                      +.+.+.+++|+|+
T Consensus       111 ~~~~~~~l~VGD~  123 (189)
T 3ib6_A          111 QIDKTEAVMVGNT  123 (189)
T ss_dssp             TCCGGGEEEEESB
T ss_pred             CCCcccEEEECCC
Confidence            7889999999999

>3m9l_A Hydrolase, haloacid dehalogenase-like family; HAD family hydrolase, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Pseudomonas fluorescens} PDB: 2ybd_A* 3r09_A*

Probab=97.89  E-value=2.7e-05  Score=68.15  Aligned_cols=85  Identities=14%  Similarity=0.134  Sum_probs=65.1

Q ss_pred             EEEEeCccHHHHHHHHhc-CccEEEecCCcHHHHHHHHHHhCCCCCccc-ceEEeeccccC-----cccccccccCCCCC
Q 044162          151 LLVKLRPFVRSFLEEASR-LFEISVCTLGNREYATRAVKLLDPDCKYFN-SRIITREDFKQ-----KERKYLDLVLGQEN  223 (369)
Q Consensus       151 ~~vklRPgl~eFL~~ls~-~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~-~Ri~srd~~~~-----~~~KdL~~l~~~~~  223 (369)
                      ......||+.++|+.+.+ .+.++|.|++...++..+++.++.. .+|. ..+++.+....     .+.+-++.++.+.+
T Consensus        67 ~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~-~~f~~~~i~~~~~~~~kp~~~~~~~~~~~~g~~~~  145 (205)
T 3m9l_A           67 QGSRPAPGAVELVRELAGRGYRLGILTRNARELAHVTLEAIGLA-DCFAEADVLGRDEAPPKPHPGGLLKLAEAWDVSPS  145 (205)
T ss_dssp             EEEEECTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTTCG-GGSCGGGEECTTTSCCTTSSHHHHHHHHHTTCCGG
T ss_pred             hcCCCCccHHHHHHHHHhcCCeEEEEeCCchHHHHHHHHHcCch-hhcCcceEEeCCCCCCCCCHHHHHHHHHHcCCCHH
Confidence            457889999999999985 5999999999999999999999876 3673 45776655211     12334456778889


Q ss_pred             cEEEEeCCccccc
Q 044162          224 SIVIVDDTESVWG  236 (369)
Q Consensus       224 ~vvIvDD~~~~w~  236 (369)
                      .++.|+|+..-..
T Consensus       146 ~~i~iGD~~~Di~  158 (205)
T 3m9l_A          146 RMVMVGDYRFDLD  158 (205)
T ss_dssp             GEEEEESSHHHHH
T ss_pred             HEEEECCCHHHHH
Confidence            9999999985553

>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily, GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase; HET: FX1; 1.68A {Bordetella bronchiseptica}

Probab=97.88  E-value=2.7e-05  Score=67.11  Aligned_cols=88  Identities=8%  Similarity=-0.014  Sum_probs=59.9

Q ss_pred             EEeCccHHHHHHHHhc-CccEEEecCCcH---------------HHHHHHHHHhCCCCCcccceEEe----eccccCc--
Q 044162          153 VKLRPFVRSFLEEASR-LFEISVCTLGNR---------------EYATRAVKLLDPDCKYFNSRIIT----REDFKQK--  210 (369)
Q Consensus       153 vklRPgl~eFL~~ls~-~yEi~I~T~g~~---------------~YA~~i~~~lDp~~~~f~~Ri~s----rd~~~~~--  210 (369)
                      +++.||+.++|+.+.+ .|.++|.|++..               .++..+++.++   .+|...+++    .+++...  
T Consensus        26 ~~~~~g~~~~l~~L~~~g~~~~i~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g---~~~~~~~~~~~~~~~~~~~~KP  102 (179)
T 3l8h_A           26 WIALPGSLQAIARLTQADWTVVLATNQSGLARGLFDTATLNAIHDKMHRALAQMG---GVVDAIFMCPHGPDDGCACRKP  102 (179)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEEEECTTTTTTSSCHHHHHHHHHHHHHHHHHTT---CCCCEEEEECCCTTSCCSSSTT
T ss_pred             ceECcCHHHHHHHHHHCCCEEEEEECCCccccCcCCHHHHHHHHHHHHHHHHhCC---CceeEEEEcCCCCCCCCCCCCC
Confidence            4567999999999985 599999999987               67788887776   345432221    2333221  


Q ss_pred             ----ccccccccCCCCCcEEEEeCCccccccCCCceE
Q 044162          211 ----ERKYLDLVLGQENSIVIVDDTESVWGGRVENLI  243 (369)
Q Consensus       211 ----~~KdL~~l~~~~~~vvIvDD~~~~w~~~~~N~I  243 (369)
                          +.+-++.++.+.+.+++|+|+..-.......|+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~vGD~~~Di~~a~~aG~  139 (179)
T 3l8h_A          103 LPGMYRDIARRYDVDLAGVPAVGDSLRDLQAAAQAGC  139 (179)
T ss_dssp             SSHHHHHHHHHHTCCCTTCEEEESSHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHCCC
Confidence                234456678899999999999854433333444

>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}

Probab=97.85  E-value=3.5e-06  Score=68.84  Aligned_cols=88  Identities=14%  Similarity=0.124  Sum_probs=63.3

Q ss_pred             CccHHHHHHHHhc-CccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCcEEEE
Q 044162          156 RPFVRSFLEEASR-LFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENSIVIV  228 (369)
Q Consensus       156 RPgl~eFL~~ls~-~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~vvIv  228 (369)
                      .||+.++|+.+.+ .+.++|.|++...++..+++.++.. .+|. .+++.++....      +.+-++.++.+.+.+++|
T Consensus        20 ~~~~~~~l~~L~~~G~~~~i~S~~~~~~~~~~l~~~~l~-~~f~-~i~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~v   97 (137)
T 2pr7_A           20 QRRWRNLLAAAKKNGVGTVILSNDPGGLGAAPIRELETN-GVVD-KVLLSGELGVEKPEEAAFQAAADAIDLPMRDCVLV   97 (137)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEECSCCGGGGHHHHHHHHT-TSSS-EEEEHHHHSCCTTSHHHHHHHHHHTTCCGGGEEEE
T ss_pred             CccHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHCChH-hhcc-EEEEeccCCCCCCCHHHHHHHHHHcCCCcccEEEE
Confidence            5999999999985 5999999999999999999888655 3674 46655543321      233345567788899999


Q ss_pred             eCCccccccCCCceEEe
Q 044162          229 DDTESVWGGRVENLITV  245 (369)
Q Consensus       229 DD~~~~w~~~~~N~I~I  245 (369)
                      +|++.-.......++..
T Consensus        98 gD~~~di~~a~~~G~~~  114 (137)
T 2pr7_A           98 DDSILNVRGAVEAGLVG  114 (137)
T ss_dssp             ESCHHHHHHHHHHTCEE
T ss_pred             cCCHHHHHHHHHCCCEE
Confidence            99986554333445543

>3m1y_A Phosphoserine phosphatase (SERB); NYSGXRC, PSI II, phophoserine phosphatase, protein structure initiative, structural genomics; 2.40A {Helicobacter pylori} SCOP: c.108.1.0

Probab=97.78  E-value=2.5e-05  Score=68.49  Aligned_cols=91  Identities=12%  Similarity=0.061  Sum_probs=66.5

Q ss_pred             EEeCccHHHHHHHHhcC-ccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeecc-----------ccC-----cccccc
Q 044162          153 VKLRPFVRSFLEEASRL-FEISVCTLGNREYATRAVKLLDPDCKYFNSRIITRED-----------FKQ-----KERKYL  215 (369)
Q Consensus       153 vklRPgl~eFL~~ls~~-yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~-----------~~~-----~~~KdL  215 (369)
                      +.++||+.++|+.+.+. +.++|.|++.+.++..+++.++... +|...+ +.++           +..     .+.+-+
T Consensus        74 ~~~~~~~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~gl~~-~f~~~~-~~~~~~~~~~~~~~~~~~k~k~~~~~~~~  151 (217)
T 3m1y_A           74 LPLFEGALELVSALKEKNYKVVCFSGGFDLATNHYRDLLHLDA-AFSNTL-IVENDALNGLVTGHMMFSHSKGEMLLVLQ  151 (217)
T ss_dssp             CCBCBTHHHHHHHHHTTTEEEEEEEEEEHHHHHHHHHHHTCSE-EEEEEE-EEETTEEEEEEEESCCSTTHHHHHHHHHH
T ss_pred             CcCCCCHHHHHHHHHHCCCEEEEEcCCchhHHHHHHHHcCcch-hcccee-EEeCCEEEeeeccCCCCCCChHHHHHHHH
Confidence            56899999999999854 9999999999999999999998764 675433 2222           111     122334


Q ss_pred             cccCCCCCcEEEEeCCccccccCCCceEEe
Q 044162          216 DLVLGQENSIVIVDDTESVWGGRVENLITV  245 (369)
Q Consensus       216 ~~l~~~~~~vvIvDD~~~~w~~~~~N~I~I  245 (369)
                      +.++.+.+.++.|+|++.-......-++.+
T Consensus       152 ~~~g~~~~~~i~vGDs~~Di~~a~~aG~~~  181 (217)
T 3m1y_A          152 RLLNISKTNTLVVGDGANDLSMFKHAHIKI  181 (217)
T ss_dssp             HHHTCCSTTEEEEECSGGGHHHHTTCSEEE
T ss_pred             HHcCCCHhHEEEEeCCHHHHHHHHHCCCeE
Confidence            556778899999999986554444556655

>2gmw_A D,D-heptose 1,7-bisphosphate phosphatase; Zn-binding protein, hydrolase; 1.50A {Escherichia coli} SCOP: c.108.1.19 PDB: 3esq_A 3esr_A 3l1u_A 3l1v_A 3l8e_A 3l8f_A 3l8g_A*

Probab=97.77  E-value=3.2e-05  Score=69.23  Aligned_cols=106  Identities=14%  Similarity=0.001  Sum_probs=72.1

Q ss_pred             CCceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHHHHHHHh-cC
Q 044162           91 MRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEAS-RL  169 (369)
Q Consensus        91 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~eFL~~ls-~~  169 (369)
                      .+...+++|+||||+.......  .                                  .-.+.+.||+.++|+.+. +.
T Consensus        23 ~~~k~v~~D~DGTL~~~~~~~~--~----------------------------------~~~~~~~pg~~e~L~~L~~~G   66 (211)
T 2gmw_A           23 KSVPAIFLDRDGTINVDHGYVH--E----------------------------------IDNFEFIDGVIDAMRELKKMG   66 (211)
T ss_dssp             -CBCEEEECSBTTTBCCCSSCC--S----------------------------------GGGCCBCTTHHHHHHHHHHTT
T ss_pred             hcCCEEEEcCCCCeECCCCccc--C----------------------------------cccCcCCcCHHHHHHHHHHCC
Confidence            3456899999999997542211  0                                  001346799999999997 56


Q ss_pred             ccEEEecCCc---------------HHHHHHHHHHhCCCCCcccceEEeec-----------cccCc------ccccccc
Q 044162          170 FEISVCTLGN---------------REYATRAVKLLDPDCKYFNSRIITRE-----------DFKQK------ERKYLDL  217 (369)
Q Consensus       170 yEi~I~T~g~---------------~~YA~~i~~~lDp~~~~f~~Ri~srd-----------~~~~~------~~KdL~~  217 (369)
                      +.++|.|++.               ..++..+++.++-.   |..-+++.+           ++...      +.+-++.
T Consensus        67 ~~~~ivTn~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~---f~~~~~~~~~~~~~~~~~~~~~~~~KP~p~~~~~~~~~  143 (211)
T 2gmw_A           67 FALVVVTNQSGIARGKFTEAQFETLTEWMDWSLADRDVD---LDGIYYCPHHPQGSVEEFRQVCDCRKPHPGMLLSARDY  143 (211)
T ss_dssp             CEEEEEEECTHHHHTSSCHHHHHHHHHHHHHHHHHTTCC---CSEEEEECCBTTCSSGGGBSCCSSSTTSCHHHHHHHHH
T ss_pred             CeEEEEECcCCcCCCccCHHHHHHHHHHHHHHHHHcCCc---eEEEEECCcCCCCcccccCccCcCCCCCHHHHHHHHHH
Confidence            9999999999               58899999888765   543333332           12111      2233455


Q ss_pred             cCCCCCcEEEEeCCcccc
Q 044162          218 VLGQENSIVIVDDTESVW  235 (369)
Q Consensus       218 l~~~~~~vvIvDD~~~~w  235 (369)
                      ++.+.+.+++|+|+..-.
T Consensus       144 lgi~~~~~~~VGD~~~Di  161 (211)
T 2gmw_A          144 LHIDMAASYMVGDKLEDM  161 (211)
T ss_dssp             HTBCGGGCEEEESSHHHH
T ss_pred             cCCCHHHEEEEcCCHHHH
Confidence            677889999999998444

>3kzx_A HAD-superfamily hydrolase, subfamily IA, variant; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 1.90A {Ehrlichia chaffeensis}

Probab=97.75  E-value=9.8e-05  Score=65.43  Aligned_cols=83  Identities=14%  Similarity=0.102  Sum_probs=64.3

Q ss_pred             EEEeCccHHHHHHHHhc-CccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCC-
Q 044162          152 LVKLRPFVRSFLEEASR-LFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQEN-  223 (369)
Q Consensus       152 ~vklRPgl~eFL~~ls~-~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~-  223 (369)
                      .....||+.++|+.+.+ .+.++|+|++.+.++..+++.++-.. +|. .+++.++....      +.+-++.++.+.+ 
T Consensus       101 ~~~~~~~~~~~l~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~-~f~-~i~~~~~~~~~Kp~~~~~~~~~~~lgi~~~~  178 (231)
T 3kzx_A          101 NFMLNDGAIELLDTLKENNITMAIVSNKNGERLRSEIHHKNLTH-YFD-SIIGSGDTGTIKPSPEPVLAALTNINIEPSK  178 (231)
T ss_dssp             CCEECTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHTTCGG-GCS-EEEEETSSSCCTTSSHHHHHHHHHHTCCCST
T ss_pred             cceECcCHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHCCchh-hee-eEEcccccCCCCCChHHHHHHHHHcCCCccc
Confidence            46789999999999985 59999999999999999999988763 674 46666655431      2334556777887 


Q ss_pred             cEEEEeCCccccc
Q 044162          224 SIVIVDDTESVWG  236 (369)
Q Consensus       224 ~vvIvDD~~~~w~  236 (369)
                      .++.|+|++.-..
T Consensus       179 ~~v~vGD~~~Di~  191 (231)
T 3kzx_A          179 EVFFIGDSISDIQ  191 (231)
T ss_dssp             TEEEEESSHHHHH
T ss_pred             CEEEEcCCHHHHH
Confidence            8999999985443

>3umb_A Dehalogenase-like hydrolase; 2.20A {Ralstonia solanacearum}

Probab=97.75  E-value=7e-05  Score=66.23  Aligned_cols=81  Identities=12%  Similarity=0.076  Sum_probs=63.9

Q ss_pred             EEeCccHHHHHHHHhcC-ccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCcE
Q 044162          153 VKLRPFVRSFLEEASRL-FEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENSI  225 (369)
Q Consensus       153 vklRPgl~eFL~~ls~~-yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~v  225 (369)
                      +...||+.++|+.+.+. +.++|.|++...++..+++.++... +|. .+++.++....      +.+-++.++.+.+.+
T Consensus        98 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~l~~-~f~-~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~  175 (233)
T 3umb_A           98 LSAFPENVPVLRQLREMGLPLGILSNGNPQMLEIAVKSAGMSG-LFD-HVLSVDAVRLYKTAPAAYALAPRAFGVPAAQI  175 (233)
T ss_dssp             CEECTTHHHHHHHHHTTTCCEEEEESSCHHHHHHHHHTTTCTT-TCS-EEEEGGGTTCCTTSHHHHTHHHHHHTSCGGGE
T ss_pred             CCCCCCHHHHHHHHHhCCCcEEEEeCCCHHHHHHHHHHCCcHh-hcC-EEEEecccCCCCcCHHHHHHHHHHhCCCcccE
Confidence            66789999999999854 9999999999999999999888764 674 56766655431      334455677889999


Q ss_pred             EEEeCCcccc
Q 044162          226 VIVDDTESVW  235 (369)
Q Consensus       226 vIvDD~~~~w  235 (369)
                      ++|+|+..-.
T Consensus       176 ~~vGD~~~Di  185 (233)
T 3umb_A          176 LFVSSNGWDA  185 (233)
T ss_dssp             EEEESCHHHH
T ss_pred             EEEeCCHHHH
Confidence            9999997544

>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A

Probab=97.70  E-value=3.6e-05  Score=62.98  Aligned_cols=58  Identities=16%  Similarity=-0.007  Sum_probs=49.5

Q ss_pred             HhhhcCceEEecccCCC-CChhHHHHHHhcCCEEEeccCCCceEEEecCC-CcccccccC
Q 044162          312 SRILMGCTILFGDDDFE-ELPLTWSRAEEMGAICTLVTDASVTHVVSSNT-QSETFEWAE  369 (369)
Q Consensus       312 ~~VL~g~~ivFSg~~p~-~~p~lw~la~~~GA~v~~~i~~~vTHvVa~~~-gT~K~~~a~  369 (369)
                      ...|.|.++||+|.++. .+..+..+++.+||.|+..++..|+|||+... |+.|.+.|+
T Consensus        30 ~~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Gg~v~~sVSkkTd~LV~G~~~g~sK~~kA~   89 (109)
T 2k6g_A           30 ENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAA   89 (109)
T ss_dssp             TTTTTTCEEEEESBCSSCCHHHHHHHHHHTTCEEESSCCTTCCEEEECBCCCHHHHHHHH
T ss_pred             CCCCCCCEEEEeeeCCCCCHHHHHHHHHHcCCEeeCcccCCceEEEECCCCChHHHHHHH
Confidence            35799999999999976 45588999999999999999999999999865 447877763

>3um9_A Haloacid dehalogenase, type II; haloacid dehalogenase-like hydrolase protein superfamily, defluorinase, hydrolase; 2.19A {Polaromonas SP}

Probab=97.66  E-value=8.2e-05  Score=65.53  Aligned_cols=81  Identities=14%  Similarity=0.094  Sum_probs=63.1

Q ss_pred             EEeCccHHHHHHHHhcC-ccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCcE
Q 044162          153 VKLRPFVRSFLEEASRL-FEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENSI  225 (369)
Q Consensus       153 vklRPgl~eFL~~ls~~-yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~v  225 (369)
                      ....||+.++|+.+.+. +.++|.|++.+.++..+++.++-. .+|. .+++.++....      +.+-++.++.+.+.+
T Consensus        95 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~-~~f~-~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~  172 (230)
T 3um9_A           95 LTPFADVPQALQQLRAAGLKTAILSNGSRHSIRQVVGNSGLT-NSFD-HLISVDEVRLFKPHQKVYELAMDTLHLGESEI  172 (230)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHTCG-GGCS-EEEEGGGTTCCTTCHHHHHHHHHHHTCCGGGE
T ss_pred             CCCCCCHHHHHHHHHhCCCeEEEEeCCCHHHHHHHHHHCCCh-hhcc-eeEehhhcccCCCChHHHHHHHHHhCCCcccE
Confidence            56789999999999854 999999999999999999998866 3674 56666655431      233455677889999


Q ss_pred             EEEeCCcccc
Q 044162          226 VIVDDTESVW  235 (369)
Q Consensus       226 vIvDD~~~~w  235 (369)
                      +.|+|+..-.
T Consensus       173 ~~iGD~~~Di  182 (230)
T 3um9_A          173 LFVSCNSWDA  182 (230)
T ss_dssp             EEEESCHHHH
T ss_pred             EEEeCCHHHH
Confidence            9999998433

>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.63  E-value=4.7e-05  Score=62.61  Aligned_cols=58  Identities=16%  Similarity=-0.007  Sum_probs=49.7

Q ss_pred             HhhhcCceEEecccCCC-CChhHHHHHHhcCCEEEeccCCCceEEEecCC-CcccccccC
Q 044162          312 SRILMGCTILFGDDDFE-ELPLTWSRAEEMGAICTLVTDASVTHVVSSNT-QSETFEWAE  369 (369)
Q Consensus       312 ~~VL~g~~ivFSg~~p~-~~p~lw~la~~~GA~v~~~i~~~vTHvVa~~~-gT~K~~~a~  369 (369)
                      ...|.|.+|||+|.++. .+..++.+++++||.|+..++.+|+|||+... |+.|.+.|+
T Consensus        20 ~~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~~sVSkkTd~LV~G~~~g~sKl~KA~   79 (112)
T 2ebu_A           20 ENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAA   79 (112)
T ss_dssp             SSSSTTCEEEECSCCSSSCHHHHHHHHHHTTCEECSSCCSSCCEEEECSSCCSHHHHHHH
T ss_pred             CCCcCCCEEEEeeeCCCCCHHHHHHHHHHcCCEEeccccCCeeEEEecCCCChHHHHHHH
Confidence            35699999999999976 45589999999999999999999999999864 558887763

>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}

Probab=97.61  E-value=5.1e-05  Score=64.49  Aligned_cols=90  Identities=8%  Similarity=-0.068  Sum_probs=62.1

Q ss_pred             EEEeCccHHHHHHHHhc-CccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCcccccccccCCCCCcEEEEeC
Q 044162          152 LVKLRPFVRSFLEEASR-LFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKYLDLVLGQENSIVIVDD  230 (369)
Q Consensus       152 ~vklRPgl~eFL~~ls~-~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~~~KdL~~l~~~~~~vvIvDD  230 (369)
                      .-...|+..++|+.+.+ .+.++|.|++...++..+++.++... +|...    ......+.+-++.++.+.+.+++|+|
T Consensus        34 ~~~~~~~~~~~l~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~-~~~~~----kp~~~~~~~~~~~~~~~~~~~~~vGD  108 (162)
T 2p9j_A           34 IKVFNVLDGIGIKLLQKMGITLAVISGRDSAPLITRLKELGVEE-IYTGS----YKKLEIYEKIKEKYSLKDEEIGFIGD  108 (162)
T ss_dssp             EEEEEHHHHHHHHHHHTTTCEEEEEESCCCHHHHHHHHHTTCCE-EEECC------CHHHHHHHHHHTTCCGGGEEEEEC
T ss_pred             eeeecccHHHHHHHHHHCCCEEEEEeCCCcHHHHHHHHHcCCHh-hccCC----CCCHHHHHHHHHHcCCCHHHEEEECC
Confidence            34567999999999984 69999999999999999999987663 45320    00011122334556677889999999


Q ss_pred             CccccccCCCceEEeC
Q 044162          231 TESVWGGRVENLITVG  246 (369)
Q Consensus       231 ~~~~w~~~~~N~I~I~  246 (369)
                      +..-.......++.+-
T Consensus       109 ~~~Di~~a~~ag~~~~  124 (162)
T 2p9j_A          109 DVVDIEVMKKVGFPVA  124 (162)
T ss_dssp             SGGGHHHHHHSSEEEE
T ss_pred             CHHHHHHHHHCCCeEE
Confidence            9855543334566543

>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens}

Probab=97.55  E-value=4e-05  Score=62.34  Aligned_cols=53  Identities=11%  Similarity=-0.015  Sum_probs=41.4

Q ss_pred             HHHhhhcCceEEecccCCCC----ChhHHH-HHHhcCCEEEeccCCCceEEEecCCCcccc
Q 044162          310 IRSRILMGCTILFGDDDFEE----LPLTWS-RAEEMGAICTLVTDASVTHVVSSNTQSETF  365 (369)
Q Consensus       310 ~r~~VL~g~~ivFSg~~p~~----~p~lw~-la~~~GA~v~~~i~~~vTHvVa~~~gT~K~  365 (369)
                      ....+|+||.++|   +|..    +..++. +|+++||+++.+++++|||||+.+..|.|.
T Consensus         7 ~~~~~F~g~~v~~---~p~~~~~~r~~i~~~~a~~~Ga~v~~~~~~~vTHVVvd~~~s~~~   64 (106)
T 2jw5_A            7 EAEEWLSSLRAHV---VRTGIGRARAELFEKQIVQHGGQLCPAQGPGVTHIVVDEGMDYER   64 (106)
T ss_dssp             CGGGCGGGSCCCB---CTTTCCSSSTTHHHHHHHHTTCCCCSTTCTTCCEEEECSSSCHHH
T ss_pred             cCcCEeCCeEEEE---EecCCchHHHHHHHHHHHHcCCEEeeccCCCccEEEEcCCCCHHH
Confidence            4678999999997   3443    225555 899999999999999999999986555543

>2w43_A Hypothetical 2-haloalkanoic acid dehalogenase; hydrolase, metabolic process; HET: MES; 1.66A {Sulfolobus tokodaii} PDB: 2w11_A

Probab=97.53  E-value=0.00019  Score=62.49  Aligned_cols=88  Identities=17%  Similarity=0.161  Sum_probs=62.9

Q ss_pred             EEeCccHHHHHHHHhcCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCcEE
Q 044162          153 VKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENSIV  226 (369)
Q Consensus       153 vklRPgl~eFL~~ls~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~vv  226 (369)
                      +.+.||+.+ |+.+.+.+.++|.|++.+.++..+++.++.. .+|. .+++.++....      +.+-++.++  .+.++
T Consensus        73 ~~~~~~~~~-l~~l~~~~~~~i~t~~~~~~~~~~l~~~~l~-~~f~-~~~~~~~~~~~Kp~~~~~~~~~~~~~--~~~~~  147 (201)
T 2w43_A           73 LKAYEDTKY-LKEISEIAEVYALSNGSINEVKQHLERNGLL-RYFK-GIFSAESVKEYKPSPKVYKYFLDSIG--AKEAF  147 (201)
T ss_dssp             CEECGGGGG-HHHHHHHSEEEEEESSCHHHHHHHHHHTTCG-GGCS-EEEEGGGGTCCTTCHHHHHHHHHHHT--CSCCE
T ss_pred             cccCCChHH-HHHHHhCCeEEEEeCcCHHHHHHHHHHCCcH-HhCc-EEEehhhcCCCCCCHHHHHHHHHhcC--CCcEE
Confidence            567899999 9999744999999999999999999998876 4674 57766655431      222344555  78899


Q ss_pred             EEeCCccccccCCCceEEe
Q 044162          227 IVDDTESVWGGRVENLITV  245 (369)
Q Consensus       227 IvDD~~~~w~~~~~N~I~I  245 (369)
                      +|+|++.-.......++.+
T Consensus       148 ~vGD~~~Di~~a~~aG~~~  166 (201)
T 2w43_A          148 LVSSNAFDVIGAKNAGMRS  166 (201)
T ss_dssp             EEESCHHHHHHHHHTTCEE
T ss_pred             EEeCCHHHhHHHHHCCCEE
Confidence            9999985443323344443

>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A

Probab=97.53  E-value=4.8e-05  Score=68.82  Aligned_cols=55  Identities=13%  Similarity=0.035  Sum_probs=41.6

Q ss_pred             HHHhhhcCceEEecccCCCCChhHHHHHHhcCCEEEeccCCCceEEEecCC-Cccccccc
Q 044162          310 IRSRILMGCTILFGDDDFEELPLTWSRAEEMGAICTLVTDASVTHVVSSNT-QSETFEWA  368 (369)
Q Consensus       310 ~r~~VL~g~~ivFSg~~p~~~p~lw~la~~~GA~v~~~i~~~vTHvVa~~~-gT~K~~~a  368 (369)
                      -+++.+++++|+|||+.+.   .+.++++.|||.++.++++ +|||||.+. .|.|+..|
T Consensus         5 ~~~~~~~~~~v~~sG~~~~---~~~~~i~~lGg~~~~~~~~-~THlI~~~~~rt~K~l~a   60 (209)
T 2etx_A            5 KLNQESTAPKVLFTGVVDA---RGERAVLALGGSLAGSAAE-ASHLVTDRIRRTVKFLCA   60 (209)
T ss_dssp             -------CCEEEECSSCCH---HHHHHHHHTTCEECSSTTT-CSEEECSSCCCSHHHHHH
T ss_pred             cccccCCCcEEEEeCCCcH---HHHHHHHHCCCEEeCCCCC-ceEEEECCCCCCHHHHHH
Confidence            4678899999999998863   5688999999999999984 999999864 69998765

>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}

Probab=97.44  E-value=4e-05  Score=70.08  Aligned_cols=58  Identities=16%  Similarity=0.131  Sum_probs=48.4

Q ss_pred             HHHhhhcCceEEecccCCCCChhHHHHHHhcCCEEEeccCCCceEEEecC-CCccccccc
Q 044162          310 IRSRILMGCTILFGDDDFEELPLTWSRAEEMGAICTLVTDASVTHVVSSN-TQSETFEWA  368 (369)
Q Consensus       310 ~r~~VL~g~~ivFSg~~p~~~p~lw~la~~~GA~v~~~i~~~vTHvVa~~-~gT~K~~~a  368 (369)
                      ++--.+.|++|+|||+.+.....+.+++++|||.++.++ +++|||||.+ .+|.|+.+|
T Consensus         9 ~~~~~~~~~~i~~SG~~~~~~~~l~~~i~~lGg~v~~~~-~~~THLI~~~~~rT~K~l~A   67 (219)
T 3sqd_A            9 MKLTPELTPFVLFTGFEPVQVQQYIKKLYILGGEVAESA-QKCTHLIASKVTRTVKFLTA   67 (219)
T ss_dssp             CCCCGGGCCEEEECSCCHHHHHHHHHHHHHTTCEECSSG-GGCSEEECSSCCCCHHHHHH
T ss_pred             cccCCCCCeEEEEeCCChHHHHHHHHHHHHCCCEEeCCC-CCceEEEECCCCCCHHHHHH
Confidence            444568999999999777655578899999999999987 7999999986 578898776

>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A

Probab=97.42  E-value=4.7e-05  Score=62.71  Aligned_cols=57  Identities=12%  Similarity=0.034  Sum_probs=48.0

Q ss_pred             hhhcCceEEecccCCCCChhHHHHHHhcCCEEEeccCCCceEEEecC---CCcccccccC
Q 044162          313 RILMGCTILFGDDDFEELPLTWSRAEEMGAICTLVTDASVTHVVSSN---TQSETFEWAE  369 (369)
Q Consensus       313 ~VL~g~~ivFSg~~p~~~p~lw~la~~~GA~v~~~i~~~vTHvVa~~---~gT~K~~~a~  369 (369)
                      ..|.|.++||+|-++..+..+..+.+.+||+++..++..|||||+..   ....|.+.|+
T Consensus         9 ~~l~G~~~ViTG~l~~~R~e~k~~ie~~Ggkv~~sVskkT~~lV~g~~~e~~gsKl~kA~   68 (113)
T 2cok_A            9 KPLSNMKILTLGKLSRNKDEVKAMIEKLGGKLTGTANKASLCISTKKEVEKMNKKMEEVK   68 (113)
T ss_dssp             CSSSSCEEEECSCCSSCHHHHHHHHHHTTCEEESCSTTCSEEECCHHHHHHCCHHHHHHH
T ss_pred             CCcCCCEEEEEecCCCCHHHHHHHHHHCCCEEcCccccCccEEEECCCCCCCChHHHHHH
Confidence            46999999999999764458888999999999999999999999983   2557777663

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=97.40  E-value=0.00027  Score=70.32  Aligned_cols=107  Identities=15%  Similarity=0.108  Sum_probs=73.4

Q ss_pred             cCCceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHHHHHHHh-c
Q 044162           90 RMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEAS-R  168 (369)
Q Consensus        90 ~~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~eFL~~ls-~  168 (369)
                      ..+...++||+||||+.+........                      ..          .-|..+-||+.++|+.|. .
T Consensus        55 ~~~~k~v~fD~DGTL~~~~~~~~~~~----------------------~~----------~~~~~~~pgv~e~L~~L~~~  102 (416)
T 3zvl_A           55 KPQGKVAAFDLDGTLITTRSGKVFPT----------------------SP----------SDWRILYPEIPKKLQELAAE  102 (416)
T ss_dssp             CCCSSEEEECSBTTTEECSSCSSSCS----------------------ST----------TCCEESCTTHHHHHHHHHHT
T ss_pred             CCCCeEEEEeCCCCccccCCCccCCC----------------------CH----------HHhhhhcccHHHHHHHHHHC
Confidence            34567899999999997653211000                      00          112346799999999997 5


Q ss_pred             CccEEEecCCc------------HHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccC----CCCCcEE
Q 044162          169 LFEISVCTLGN------------REYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVL----GQENSIV  226 (369)
Q Consensus       169 ~yEi~I~T~g~------------~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~----~~~~~vv  226 (369)
                      .|.|+|.|+..            +.++..+++.++..   | +.+++.+++...      +.+-++.++    .+.+.++
T Consensus       103 G~~l~IvTN~~gi~~g~~~~~~~~~~~~~~l~~lgl~---f-d~i~~~~~~~~~KP~p~~~~~a~~~l~~~~~v~~~~~l  178 (416)
T 3zvl_A          103 GYKLVIFTNQMGIGRGKLPAEVFKGKVEAVLEKLGVP---F-QVLVATHAGLNRKPVSGMWDHLQEQANEGIPISVEDSV  178 (416)
T ss_dssp             TCEEEEEEECHHHHTTSSCHHHHHHHHHHHHHHHTSC---C-EEEEECSSSTTSTTSSHHHHHHHHHSSTTCCCCGGGCE
T ss_pred             CCeEEEEeCCccccCCCCCHHHHHHHHHHHHHHcCCC---E-EEEEECCCCCCCCCCHHHHHHHHHHhCCCCCCCHHHeE
Confidence            69999999966            34488888887653   6 457777776532      333445565    6889999


Q ss_pred             EEeCCc
Q 044162          227 IVDDTE  232 (369)
Q Consensus       227 IvDD~~  232 (369)
                      +|.|+.
T Consensus       179 ~VGDs~  184 (416)
T 3zvl_A          179 FVGDAA  184 (416)
T ss_dssp             EECSCS
T ss_pred             EEECCC
Confidence            999996

>2oda_A Hypothetical protein pspto_2114; haloacid dehalogenase, phosphonoacetaldehyde hydrolase, protein binding; HET: EPE; 1.90A {Pseudomonas syringae PV}

Probab=97.40  E-value=0.00013  Score=65.00  Aligned_cols=85  Identities=8%  Similarity=-0.054  Sum_probs=57.5

Q ss_pred             EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCC-CCc
Q 044162          153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQ-ENS  224 (369)
Q Consensus       153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~-~~~  224 (369)
                      +++.||+.++|+.+. +.|.+.|-|+..+..+..++   .   .+| +.+++.++....      +.+-++.++.. .+.
T Consensus        35 ~~~~pg~~e~L~~L~~~g~~~~i~T~~~~~~~~~~~---~---~~~-d~v~~~~~~~~~KP~p~~~~~a~~~l~~~~~~~  107 (196)
T 2oda_A           35 AQLTPGAQNALKALRDQGMPCAWIDELPEALSTPLA---A---PVN-DWMIAAPRPTAGWPQPDACWMALMALNVSQLEG  107 (196)
T ss_dssp             GSBCTTHHHHHHHHHHHTCCEEEECCSCHHHHHHHH---T---TTT-TTCEECCCCSSCTTSTHHHHHHHHHTTCSCSTT
T ss_pred             CCcCcCHHHHHHHHHHCCCEEEEEcCChHHHHHHhc---C---ccC-CEEEECCcCCCCCCChHHHHHHHHHcCCCCCcc
Confidence            456799999999997 57999999999998885444   3   345 446666665421      33445566665 478


Q ss_pred             EEEEeCCccccccCCCceEE
Q 044162          225 IVIVDDTESVWGGRVENLIT  244 (369)
Q Consensus       225 vvIvDD~~~~w~~~~~N~I~  244 (369)
                      +++|.|++.-.......++.
T Consensus       108 ~v~VGDs~~Di~aA~~aG~~  127 (196)
T 2oda_A          108 CVLISGDPRLLQSGLNAGLW  127 (196)
T ss_dssp             CEEEESCHHHHHHHHHHTCE
T ss_pred             EEEEeCCHHHHHHHHHCCCE
Confidence            99999998544332334443

>4eze_A Haloacid dehalogenase-like hydrolase; magnesium binding site, enzyme function initiativ; 2.27A {Salmonella enterica subsp}

Probab=97.40  E-value=0.00028  Score=67.71  Aligned_cols=92  Identities=12%  Similarity=0.082  Sum_probs=65.0

Q ss_pred             EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccc---------cC------ccccccc
Q 044162          153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDF---------KQ------KERKYLD  216 (369)
Q Consensus       153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~---------~~------~~~KdL~  216 (369)
                      +.++||+.++|+.+. ..+.++|.|++...+++.+++.++-. .+|...+...+..         ..      .+.+-++
T Consensus       178 ~~l~pg~~e~L~~Lk~~G~~v~IvSn~~~~~~~~~l~~lgl~-~~f~~~l~~~dg~~tg~i~~~~~~~kpkp~~~~~~~~  256 (317)
T 4eze_A          178 MTLSPGLLTILPVIKAKGFKTAIISGGLDIFTQRLKARYQLD-YAFSNTVEIRDNVLTDNITLPIMNAANKKQTLVDLAA  256 (317)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHHTCS-EEEEECEEEETTEEEEEECSSCCCHHHHHHHHHHHHH
T ss_pred             CEECcCHHHHHHHHHhCCCEEEEEeCccHHHHHHHHHHcCCC-eEEEEEEEeeCCeeeeeEecccCCCCCCHHHHHHHHH
Confidence            568999999999998 56999999999999999999999876 4676544322210         00      0223344


Q ss_pred             ccCCCCCcEEEEeCCccccccCCCceEEe
Q 044162          217 LVLGQENSIVIVDDTESVWGGRVENLITV  245 (369)
Q Consensus       217 ~l~~~~~~vvIvDD~~~~w~~~~~N~I~I  245 (369)
                      .++.+.+.+++|.|+..-.......++.+
T Consensus       257 ~lgv~~~~~i~VGDs~~Di~aa~~AG~~v  285 (317)
T 4eze_A          257 RLNIATENIIACGDGANDLPMLEHAGTGI  285 (317)
T ss_dssp             HHTCCGGGEEEEECSGGGHHHHHHSSEEE
T ss_pred             HcCCCcceEEEEeCCHHHHHHHHHCCCeE
Confidence            56778899999999985444333344443

>2o2x_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; 1.50A {Mesorhizobium loti} SCOP: c.108.1.19

Probab=97.34  E-value=0.00033  Score=62.66  Aligned_cols=78  Identities=13%  Similarity=0.022  Sum_probs=54.7

Q ss_pred             EEeCccHHHHHHHHh-cCccEEEecCCcH---------------HHHHHHHHHhCCCCCcccceEEee-----------c
Q 044162          153 VKLRPFVRSFLEEAS-RLFEISVCTLGNR---------------EYATRAVKLLDPDCKYFNSRIITR-----------E  205 (369)
Q Consensus       153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~---------------~YA~~i~~~lDp~~~~f~~Ri~sr-----------d  205 (369)
                      ..+.||+.++|+.+. +.+.++|.|++..               .++..+++.++-.   |..-+.+.           +
T Consensus        55 ~~~~~g~~e~L~~L~~~G~~~~i~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~---~~~~~~~~~~~~g~~~~~~~  131 (218)
T 2o2x_A           55 IVLRPQMLPAIATANRAGIPVVVVTNQSGIARGYFGWSAFAAVNGRVLELLREEGVF---VDMVLACAYHEAGVGPLAIP  131 (218)
T ss_dssp             CCBCGGGHHHHHHHHHHTCCEEEEEECHHHHTTSCCHHHHHHHHHHHHHHHHHTTCC---CSEEEEECCCTTCCSTTCCS
T ss_pred             CeECcCHHHHHHHHHHCCCEEEEEcCcCCCCcccccHHHHHHHHHHHHHHHHHcCCc---eeeEEEeecCCCCceeeccc
Confidence            345799999999997 5799999999998               7888888887643   43222232           2


Q ss_pred             cccCc------ccccccccCCCCCcEEEEeCCcc
Q 044162          206 DFKQK------ERKYLDLVLGQENSIVIVDDTES  233 (369)
Q Consensus       206 ~~~~~------~~KdL~~l~~~~~~vvIvDD~~~  233 (369)
                      ++...      +.+-++.++.+.+.+++|.|+..
T Consensus       132 ~~~~~KP~~~~~~~~~~~~~i~~~~~~~VGD~~~  165 (218)
T 2o2x_A          132 DHPMRKPNPGMLVEAGKRLALDLQRSLIVGDKLA  165 (218)
T ss_dssp             SCTTSTTSCHHHHHHHHHHTCCGGGCEEEESSHH
T ss_pred             CCccCCCCHHHHHHHHHHcCCCHHHEEEEeCCHH
Confidence            22211      22334556778899999999983

>3fvv_A Uncharacterized protein; unknown function, structural genomics, PSI,MCSG, protein STR initiative, midwest center for structural genomics; 2.10A {Bordetella pertussis}

Probab=97.31  E-value=0.00039  Score=61.76  Aligned_cols=82  Identities=9%  Similarity=-0.076  Sum_probs=57.8

Q ss_pred             EeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeecccc------Cc-c--c------ccccc
Q 044162          154 KLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFK------QK-E--R------KYLDL  217 (369)
Q Consensus       154 klRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~------~~-~--~------KdL~~  217 (369)
                      .++||+.++|+.+. +.+.++|.|++.+.+++.+++.++-+ .+|...+...+...      .. +  -      +-++.
T Consensus        92 ~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~K~~~~~~~~~~  170 (232)
T 3fvv_A           92 SLTVQAVDVVRGHLAAGDLCALVTATNSFVTAPIARAFGVQ-HLIATDPEYRDGRYTGRIEGTPSFREGKVVRVNQWLAG  170 (232)
T ss_dssp             GCCHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCC-EEEECEEEEETTEEEEEEESSCSSTHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCC-EEEEcceEEECCEEeeeecCCCCcchHHHHHHHHHHHH
Confidence            46999999999997 57999999999999999999999876 36655544322210      00 0  0      11223


Q ss_pred             cC---CCCCcEEEEeCCccccc
Q 044162          218 VL---GQENSIVIVDDTESVWG  236 (369)
Q Consensus       218 l~---~~~~~vvIvDD~~~~w~  236 (369)
                      ++   .+.+.+++|.|+..-.+
T Consensus       171 ~~~~~~~~~~~~~vGDs~~D~~  192 (232)
T 3fvv_A          171 MGLALGDFAESYFYSDSVNDVP  192 (232)
T ss_dssp             TTCCGGGSSEEEEEECCGGGHH
T ss_pred             cCCCcCchhheEEEeCCHhhHH
Confidence            45   56788999999985443

>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*

Probab=97.15  E-value=0.00017  Score=66.62  Aligned_cols=56  Identities=14%  Similarity=0.145  Sum_probs=44.6

Q ss_pred             hhhcCceEEecccCCCCChhHHHHHHhcCCEEEe--ccCCCceEEEecCC-Cccccccc
Q 044162          313 RILMGCTILFGDDDFEELPLTWSRAEEMGAICTL--VTDASVTHVVSSNT-QSETFEWA  368 (369)
Q Consensus       313 ~VL~g~~ivFSg~~p~~~p~lw~la~~~GA~v~~--~i~~~vTHvVa~~~-gT~K~~~a  368 (369)
                      ++.++..|+|||+.+..+..++++++.||+.++.  ++++++||||+.+. .|.|+-.|
T Consensus         5 ~~~~~~~~~~Sg~~~~~~~~l~~~i~~LGg~~~~~~~~~~~~THlV~~~~~RT~K~l~a   63 (235)
T 3al2_A            5 SLKKQYIFQLSSLNPQERIDYCHLIEKLGGLVIEKQCFDPTCTHIVVGHPLRNEKYLAS   63 (235)
T ss_dssp             ---CCCEEEEESCCHHHHHHHHHHHHHTTCEECCSSSCCTTCCEEEESSCCCSHHHHHH
T ss_pred             cCCCCEEEEEcCCCHHHHHHHHHHHHHcCCEEeccCCCCCCCcEEEECCCCCCHHHHHH
Confidence            4567899999998864445889999999999986  58899999999985 48887654

>3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; IDP022 hydrolase, lipopolysaccharide biosynthesis, magnesium, STRU genomics; 1.95A {Yersinia pestis}

Probab=97.13  E-value=0.00071  Score=61.10  Aligned_cols=87  Identities=10%  Similarity=0.059  Sum_probs=59.5

Q ss_pred             EeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCcccccccccCCCCCcEEEEeCCc
Q 044162          154 KLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKYLDLVLGQENSIVIVDDTE  232 (369)
Q Consensus       154 klRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~~~KdL~~l~~~~~~vvIvDD~~  232 (369)
                      .+++++  +|+.+. ..+.+.|.|+..+..|..+++.++-.. +|...    ..-.....+-++.++.+.+.++.|-|+.
T Consensus        78 ~~~d~~--~L~~L~~~G~~l~I~T~~~~~~~~~~l~~lgi~~-~f~~~----k~K~~~l~~~~~~lg~~~~~~~~vGDs~  150 (211)
T 3ij5_A           78 NVRDGY--GIRCLITSDIDVAIITGRRAKLLEDRANTLGITH-LYQGQ----SDKLVAYHELLATLQCQPEQVAYIGDDL  150 (211)
T ss_dssp             EHHHHH--HHHHHHHTTCEEEEECSSCCHHHHHHHHHHTCCE-EECSC----SSHHHHHHHHHHHHTCCGGGEEEEECSG
T ss_pred             ccchHH--HHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCch-hhccc----CChHHHHHHHHHHcCcCcceEEEEcCCH
Confidence            345555  888886 579999999999999999999998763 55432    1101112233445677889999999998


Q ss_pred             cccccCCCceEEeCc
Q 044162          233 SVWGGRVENLITVGS  247 (369)
Q Consensus       233 ~~w~~~~~N~I~I~~  247 (369)
                      .=...-...++.+..
T Consensus       151 nDi~~~~~ag~~~a~  165 (211)
T 3ij5_A          151 IDWPVMAQVGLSVAV  165 (211)
T ss_dssp             GGHHHHTTSSEEEEC
T ss_pred             HHHHHHHHCCCEEEe
Confidence            655544456666654

>3e8m_A Acylneuraminate cytidylyltransferase; 2-keto-3-deoxynononic acid 9-phosphate phosphohydrolase, nucleotidyltransferase; HET: PEG PG4 EDO PGE; 1.10A {Bacteroides thetaiotaomicron} PDB: 3e84_A 3e81_A*

Probab=97.06  E-value=0.00013  Score=61.98  Aligned_cols=87  Identities=11%  Similarity=-0.067  Sum_probs=59.6

Q ss_pred             EeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCcccccccccCCCCCcEEEEeCCc
Q 044162          154 KLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKYLDLVLGQENSIVIVDDTE  232 (369)
Q Consensus       154 klRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~~~KdL~~l~~~~~~vvIvDD~~  232 (369)
                      ..++++  .|+.+. ..+.++|.|++.+.+++.+++.++-.. +|...    ......+.+-++.++.+.+.+++|.|+.
T Consensus        33 ~~~~~~--~l~~l~~~g~~~~i~T~~~~~~~~~~~~~~gl~~-~~~~~----kpk~~~~~~~~~~~~~~~~~~~~vGD~~  105 (164)
T 3e8m_A           33 NTSDSA--GIFWAHNKGIPVGILTGEKTEIVRRRAEKLKVDY-LFQGV----VDKLSAAEELCNELGINLEQVAYIGDDL  105 (164)
T ss_dssp             EGGGHH--HHHHHHHTTCCEEEECSSCCHHHHHHHHHTTCSE-EECSC----SCHHHHHHHHHHHHTCCGGGEEEECCSG
T ss_pred             cCChHH--HHHHHHHCCCEEEEEeCCChHHHHHHHHHcCCCE-eeccc----CChHHHHHHHHHHcCCCHHHEEEECCCH
Confidence            344544  788886 569999999999999999999988663 45331    1111112333456677889999999999


Q ss_pred             cccccCCCceEEeCc
Q 044162          233 SVWGGRVENLITVGS  247 (369)
Q Consensus       233 ~~w~~~~~N~I~I~~  247 (369)
                      .-.......++.+-.
T Consensus       106 ~Di~~~~~ag~~~~~  120 (164)
T 3e8m_A          106 NDAKLLKRVGIAGVP  120 (164)
T ss_dssp             GGHHHHTTSSEEECC
T ss_pred             HHHHHHHHCCCeEEc
Confidence            655544566776654

>2b0c_A Putative phosphatase; alpha-D-glucose-1-phosphate, structural genomic protein structure initiative, midwest center for structural genomics, MCSG; HET: G1P; 2.00A {Escherichia coli} SCOP: c.108.1.2

Probab=96.98  E-value=0.0001  Score=64.06  Aligned_cols=94  Identities=19%  Similarity=0.087  Sum_probs=63.8

Q ss_pred             EEEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHH-hCCCCCcccceEEeeccccCc------ccccccccCCCCC
Q 044162          152 LVKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKL-LDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQEN  223 (369)
Q Consensus       152 ~vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~-lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~  223 (369)
                      ++.+.||+.++|+.+. ..+.++|.|++.+.++..++.. ++.. .+|. .+++.++....      +.+-++.++.+.+
T Consensus        89 ~~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~~~~~~~l~-~~f~-~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~  166 (206)
T 2b0c_A           89 FVALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEIR-DAAD-HIYLSQDLGMRKPEARIYQHVLQAEGFSPS  166 (206)
T ss_dssp             EEEECHHHHHHHHHHHHTTCEEEEEECCCCCTTSCCGGGCHHHH-HHCS-EEEEHHHHTCCTTCHHHHHHHHHHHTCCGG
T ss_pred             hcccCccHHHHHHHHHHCCCeEEEEECCChHHHHHHHHhccChh-hhee-eEEEecccCCCCCCHHHHHHHHHHcCCCHH
Confidence            4788999999999998 6799999999998887665544 3222 2453 46655544321      2334556778889


Q ss_pred             cEEEEeCCccccccCCCceEEeCc
Q 044162          224 SIVIVDDTESVWGGRVENLITVGS  247 (369)
Q Consensus       224 ~vvIvDD~~~~w~~~~~N~I~I~~  247 (369)
                      .+++|+|++.-.......|+.+--
T Consensus       167 ~~~~vgD~~~Di~~a~~aG~~~~~  190 (206)
T 2b0c_A          167 DTVFFDDNADNIEGANQLGITSIL  190 (206)
T ss_dssp             GEEEEESCHHHHHHHHTTTCEEEE
T ss_pred             HeEEeCCCHHHHHHHHHcCCeEEE
Confidence            999999998655443445655433

>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*

Probab=96.98  E-value=0.00068  Score=58.91  Aligned_cols=114  Identities=8%  Similarity=-0.004  Sum_probs=75.2

Q ss_pred             eEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHHHHHHHh-cCccE
Q 044162           94 LHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEAS-RLFEI  172 (369)
Q Consensus        94 l~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~eFL~~ls-~~yEi  172 (369)
                      ..+++|+||||+++...-.  .                                .....-.+.|...+.|+.+. +.+.+
T Consensus         9 k~i~~DlDGTL~~~~~~~~--~--------------------------------~~~~~~~~~~~~~~~l~~L~~~G~~~   54 (180)
T 1k1e_A            9 KFVITDVDGVLTDGQLHYD--A--------------------------------NGEAIKSFHVRDGLGIKMLMDADIQV   54 (180)
T ss_dssp             CEEEEECTTTTSCSEEEEE--T--------------------------------TEEEEEEEEHHHHHHHHHHHHTTCEE
T ss_pred             eEEEEeCCCCcCCCCeeec--c--------------------------------CcceeeeeccchHHHHHHHHHCCCeE
Confidence            5789999999997643110  0                                01233456788889999997 57999


Q ss_pred             EEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCcccccccccCCCCCcEEEEeCCccccccCCCceEEeC
Q 044162          173 SVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKYLDLVLGQENSIVIVDDTESVWGGRVENLITVG  246 (369)
Q Consensus       173 ~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~~~KdL~~l~~~~~~vvIvDD~~~~w~~~~~N~I~I~  246 (369)
                      +|.|+....++..+++.++... +|...    ........+-++.++.+.+.++.|.|+..-...-...++.+-
T Consensus        55 ~i~Tg~~~~~~~~~~~~lgl~~-~~~~~----k~k~~~~~~~~~~~~~~~~~~~~vGD~~~Di~~~~~ag~~~~  123 (180)
T 1k1e_A           55 AVLSGRDSPILRRRIADLGIKL-FFLGK----LEKETACFDLMKQAGVTAEQTAYIGDDSVDLPAFAACGTSFA  123 (180)
T ss_dssp             EEEESCCCHHHHHHHHHHTCCE-EEESC----SCHHHHHHHHHHHHTCCGGGEEEEECSGGGHHHHHHSSEEEE
T ss_pred             EEEeCCCcHHHHHHHHHcCCce-eecCC----CCcHHHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHcCCeEE
Confidence            9999999999999999998763 44221    000001122234556677899999999855543334455544

>3mmz_A Putative HAD family hydrolase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.84A {Streptomyces avermitilis}

Probab=96.95  E-value=0.00056  Score=59.46  Aligned_cols=83  Identities=4%  Similarity=-0.116  Sum_probs=55.0

Q ss_pred             eCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCcccccccccCCCCCcEEEEeCCcc
Q 044162          155 LRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKYLDLVLGQENSIVIVDDTES  233 (369)
Q Consensus       155 lRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~~~KdL~~l~~~~~~vvIvDD~~~  233 (369)
                      .++++  +|+.+. ..+.++|.|++.+.+++.+++.++..  +|...    ..-.....+-++.++.+.+.++.|.|+..
T Consensus        42 ~~~~~--~l~~L~~~g~~~~i~T~~~~~~~~~~~~~lgi~--~~~~~----~~k~~~l~~~~~~~~~~~~~~~~vGD~~n  113 (176)
T 3mmz_A           42 RGDGL--GIAALRKSGLTMLILSTEQNPVVAARARKLKIP--VLHGI----DRKDLALKQWCEEQGIAPERVLYVGNDVN  113 (176)
T ss_dssp             HHHHH--HHHHHHHTTCEEEEEESSCCHHHHHHHHHHTCC--EEESC----SCHHHHHHHHHHHHTCCGGGEEEEECSGG
T ss_pred             cccHH--HHHHHHHCCCeEEEEECcChHHHHHHHHHcCCe--eEeCC----CChHHHHHHHHHHcCCCHHHEEEEcCCHH
Confidence            44554  788886 57999999999999999999999876  45321    11011122334456778889999999875


Q ss_pred             ccccCCCceEEe
Q 044162          234 VWGGRVENLITV  245 (369)
Q Consensus       234 ~w~~~~~N~I~I  245 (369)
                      =...-...++.+
T Consensus       114 D~~~~~~ag~~v  125 (176)
T 3mmz_A          114 DLPCFALVGWPV  125 (176)
T ss_dssp             GHHHHHHSSEEE
T ss_pred             HHHHHHHCCCeE
Confidence            443322344444

>3mn1_A Probable YRBI family phosphatase; structural genomics, PSI, protein structure initiative, NYSG phosphatase; 1.80A {Pseudomonas syringae PV} PDB: 3nrj_A

Probab=96.95  E-value=0.00045  Score=60.81  Aligned_cols=87  Identities=11%  Similarity=-0.059  Sum_probs=57.9

Q ss_pred             EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCcccccccccCCCCCcEEEEeCC
Q 044162          153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKYLDLVLGQENSIVIVDDT  231 (369)
Q Consensus       153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~~~KdL~~l~~~~~~vvIvDD~  231 (369)
                      +.++++.  +|+.+. ..+.++|.|++.+..++.+++.++-.. +|...    ..-.....+-++.++.+.+.++.|.|+
T Consensus        47 ~~~~~~~--~l~~L~~~g~~~~i~T~~~~~~~~~~~~~lgl~~-~f~~~----~~K~~~~~~~~~~~g~~~~~~~~vGD~  119 (189)
T 3mn1_A           47 FNTLDGQ--GIKMLIASGVTTAIISGRKTAIVERRAKSLGIEH-LFQGR----EDKLVVLDKLLAELQLGYEQVAYLGDD  119 (189)
T ss_dssp             EEHHHHH--HHHHHHHTTCEEEEECSSCCHHHHHHHHHHTCSE-EECSC----SCHHHHHHHHHHHHTCCGGGEEEEECS
T ss_pred             eccccHH--HHHHHHHCCCEEEEEECcChHHHHHHHHHcCCHH-HhcCc----CChHHHHHHHHHHcCCChhHEEEECCC
Confidence            3445554  888887 579999999999999999999998763 55431    110111223344567788999999999


Q ss_pred             ccccccCCCceEEeC
Q 044162          232 ESVWGGRVENLITVG  246 (369)
Q Consensus       232 ~~~w~~~~~N~I~I~  246 (369)
                      ..-...-...++.+.
T Consensus       120 ~nDi~~~~~ag~~~~  134 (189)
T 3mn1_A          120 LPDLPVIRRVGLGMA  134 (189)
T ss_dssp             GGGHHHHHHSSEEEE
T ss_pred             HHHHHHHHHCCCeEE
Confidence            855443334455543

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=96.94  E-value=0.00049  Score=67.97  Aligned_cols=93  Identities=15%  Similarity=0.067  Sum_probs=64.7

Q ss_pred             EEeCccHHHHHHHHhc-CccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeecc---------ccC------ccccccc
Q 044162          153 VKLRPFVRSFLEEASR-LFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITRED---------FKQ------KERKYLD  216 (369)
Q Consensus       153 vklRPgl~eFL~~ls~-~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~---------~~~------~~~KdL~  216 (369)
                      +.++||+.++|+.+.+ .|.++|.|++...+++.+++.++-+ .+|.+.+-..+.         ...      .+.+-++
T Consensus       255 ~~~~pg~~e~l~~Lk~~G~~~~ivS~~~~~~~~~~~~~lgl~-~~~~~~l~~~dg~~tg~~~~~v~~~kpk~~~~~~~~~  333 (415)
T 3p96_A          255 LELMPGARTTLRTLRRLGYACGVVSGGFRRIIEPLAEELMLD-YVAANELEIVDGTLTGRVVGPIIDRAGKATALREFAQ  333 (415)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHTTCS-EEEEECEEEETTEEEEEECSSCCCHHHHHHHHHHHHH
T ss_pred             CccCccHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCcc-ceeeeeEEEeCCEEEeeEccCCCCCcchHHHHHHHHH
Confidence            4789999999999985 5999999999999999999999876 356543311111         000      1223344


Q ss_pred             ccCCCCCcEEEEeCCccccccCCCceEEeC
Q 044162          217 LVLGQENSIVIVDDTESVWGGRVENLITVG  246 (369)
Q Consensus       217 ~l~~~~~~vvIvDD~~~~w~~~~~N~I~I~  246 (369)
                      .++.+.+.++.|+|+..-...-...++.+.
T Consensus       334 ~~gi~~~~~i~vGD~~~Di~~a~~aG~~va  363 (415)
T 3p96_A          334 RAGVPMAQTVAVGDGANDIDMLAAAGLGIA  363 (415)
T ss_dssp             HHTCCGGGEEEEECSGGGHHHHHHSSEEEE
T ss_pred             HcCcChhhEEEEECCHHHHHHHHHCCCeEE
Confidence            567788999999999855543334455543

>3n07_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; structural genomics, phosphatase, PSI-2, protein structure initiative; HET: MSE; 1.76A {Vibrio cholerae}

Probab=96.66  E-value=0.00042  Score=61.79  Aligned_cols=80  Identities=13%  Similarity=0.053  Sum_probs=53.9

Q ss_pred             HHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCcccccccccCCCCCcEEEEeCCccccccCCCc
Q 044162          163 LEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKYLDLVLGQENSIVIVDDTESVWGGRVEN  241 (369)
Q Consensus       163 L~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~~~KdL~~l~~~~~~vvIvDD~~~~w~~~~~N  241 (369)
                      |+.+. ..+.+.|.|+..+..+..+++.++-.. +|...    ........+-++.++.+.+.++.|.|+..-...-...
T Consensus        61 l~~L~~~G~~~~ivT~~~~~~~~~~l~~lgi~~-~~~~~----k~k~~~~~~~~~~~~~~~~~~~~vGD~~nDi~~~~~a  135 (195)
T 3n07_A           61 VKALMNAGIEIAIITGRRSQIVENRMKALGISL-IYQGQ----DDKVQAYYDICQKLAIAPEQTGYIGDDLIDWPVMEKV  135 (195)
T ss_dssp             HHHHHHTTCEEEEECSSCCHHHHHHHHHTTCCE-EECSC----SSHHHHHHHHHHHHCCCGGGEEEEESSGGGHHHHTTS
T ss_pred             HHHHHHCCCEEEEEECcCHHHHHHHHHHcCCcE-EeeCC----CCcHHHHHHHHHHhCCCHHHEEEEcCCHHHHHHHHHC
Confidence            77776 569999999999999999999998763 44321    1100111222345677889999999998655444455


Q ss_pred             eEEeCc
Q 044162          242 LITVGS  247 (369)
Q Consensus       242 ~I~I~~  247 (369)
                      ++.+..
T Consensus       136 g~~va~  141 (195)
T 3n07_A          136 ALRVCV  141 (195)
T ss_dssp             SEEEEC
T ss_pred             CCEEEE
Confidence            666543

>4ap9_A Phosphoserine phosphatase; hydrolase, haloacid dehalogenase superfamily, NDSB; HET: 1PS; 1.78A {Thermococcus onnurineus} PDB: 4b6j_A

Probab=96.64  E-value=0.00021  Score=61.35  Aligned_cols=88  Identities=15%  Similarity=0.125  Sum_probs=58.3

Q ss_pred             EEeCccHHHHHHHHhc-CccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeecccc-------CcccccccccCCCCCc
Q 044162          153 VKLRPFVRSFLEEASR-LFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFK-------QKERKYLDLVLGQENS  224 (369)
Q Consensus       153 vklRPgl~eFL~~ls~-~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~-------~~~~KdL~~l~~~~~~  224 (369)
                      +.++||+.++|+.+.+ .+.++|.|++.+.++..+ +.++... +| ..+.+.+...       .....-+..+  +.+.
T Consensus        78 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~-~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~k~~~l~~l--~~~~  152 (201)
T 4ap9_A           78 VNVSPEARELVETLREKGFKVVLISGSFEEVLEPF-KELGDEF-MA-NRAIFEDGKFQGIRLRFRDKGEFLKRF--RDGF  152 (201)
T ss_dssp             CCCCHHHHHHHHHHHHTTCEEEEEEEEETTTSGGG-TTTSSEE-EE-EEEEEETTEEEEEECCSSCHHHHHGGG--TTSC
T ss_pred             CCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHH-HHcCchh-he-eeEEeeCCceECCcCCccCHHHHHHhc--CcCc
Confidence            4789999999999985 599999999999999988 8777653 33 3333333211       1111233444  7788


Q ss_pred             EEEEeCCccccccCCCceEEe
Q 044162          225 IVIVDDTESVWGGRVENLITV  245 (369)
Q Consensus       225 vvIvDD~~~~w~~~~~N~I~I  245 (369)
                      ++.|.|+..-.......++.|
T Consensus       153 ~i~iGD~~~Di~~~~~ag~~v  173 (201)
T 4ap9_A          153 ILAMGDGYADAKMFERADMGI  173 (201)
T ss_dssp             EEEEECTTCCHHHHHHCSEEE
T ss_pred             EEEEeCCHHHHHHHHhCCceE
Confidence            999999985443333344543

>2r8e_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; YRBI, divalent metal, HAD superfamily, KDO 8-P, hydrolase; 1.40A {Escherichia coli O6} PDB: 2r8x_A 2r8y_A 2r8z_A 3hyc_A 3i6b_A*

Probab=96.60  E-value=0.0081  Score=52.40  Aligned_cols=81  Identities=11%  Similarity=0.037  Sum_probs=54.4

Q ss_pred             HHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCcccccccccCCCCCcEEEEeCCccccccCC
Q 044162          161 SFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKYLDLVLGQENSIVIVDDTESVWGGRV  239 (369)
Q Consensus       161 eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~~~KdL~~l~~~~~~vvIvDD~~~~w~~~~  239 (369)
                      .+|+.+. ..+.++|.|+.++..+..+++.++-.. +|...    ......+.+-++.++.+.+.+++|+|+..-.....
T Consensus        60 ~~l~~L~~~g~~v~ivT~~~~~~~~~~l~~lgl~~-~~~~~----kpk~~~~~~~~~~~g~~~~~~~~iGD~~~Di~~a~  134 (188)
T 2r8e_A           60 YGIRCALTSDIEVAIITGRKAKLVEDRCATLGITH-LYQGQ----SNKLIAFSDLLEKLAIAPENVAYVGDDLIDWPVME  134 (188)
T ss_dssp             HHHHHHHTTTCEEEEECSSCCHHHHHHHHHHTCCE-EECSC----SCSHHHHHHHHHHHTCCGGGEEEEESSGGGHHHHT
T ss_pred             HHHHHHHHCCCeEEEEeCCChHHHHHHHHHcCCce-eecCC----CCCHHHHHHHHHHcCCCHHHEEEECCCHHHHHHHH
Confidence            3788887 469999999999999999999987653 44321    00011122223455667789999999985554444


Q ss_pred             CceEEeC
Q 044162          240 ENLITVG  246 (369)
Q Consensus       240 ~N~I~I~  246 (369)
                      ..++.+.
T Consensus       135 ~ag~~~~  141 (188)
T 2r8e_A          135 KVGLSVA  141 (188)
T ss_dssp             TSSEEEE
T ss_pred             HCCCEEE
Confidence            5677664

>2i7d_A 5'(3')-deoxyribonucleotidase, cytosolic type; hydrolase; HET: DUR; 1.20A {Homo sapiens} PDB: 2jar_A* 2jao_A*

Probab=96.60  E-value=0.00058  Score=59.74  Aligned_cols=66  Identities=11%  Similarity=0.145  Sum_probs=46.7

Q ss_pred             EEeCccHHHHHHHHhc--CccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCcccccccccCCCCCcEEEEeC
Q 044162          153 VKLRPFVRSFLEEASR--LFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKYLDLVLGQENSIVIVDD  230 (369)
Q Consensus       153 vklRPgl~eFL~~ls~--~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~~~KdL~~l~~~~~~vvIvDD  230 (369)
                      +.+.||+.++|+.+.+  .+.++|.|++.+.++..+++.++.    |. .+++.+        -++.++.+++.+++|.|
T Consensus        72 ~~~~~g~~e~L~~L~~~~g~~~~ivT~~~~~~~~~~l~~~gl----f~-~i~~~~--------~~~~~~~~~~~~~~vgD  138 (193)
T 2i7d_A           72 LEPIPGALDAVREMNDLPDTQVFICTSPLLKYHHCVGEKYRW----VE-QHLGPQ--------FVERIILTRDKTVVLGD  138 (193)
T ss_dssp             CCBCTTHHHHHHHHHTSTTEEEEEEECCCSSCTTTHHHHHHH----HH-HHHCHH--------HHTTEEECSCGGGBCCS
T ss_pred             CccCcCHHHHHHHHHhCCCCeEEEEeCCChhhHHHHHHHhCc----hh-hhcCHH--------HHHHcCCCcccEEEECC
Confidence            5678999999999986  699999999999999988887654    53 233322        23344445566666544


Q ss_pred             C
Q 044162          231 T  231 (369)
Q Consensus       231 ~  231 (369)
                      +
T Consensus       139 s  139 (193)
T 2i7d_A          139 L  139 (193)
T ss_dssp             E
T ss_pred             c
Confidence            3

>3pct_A Class C acid phosphatase; hydrolase, outer membrane; 1.85A {Pasteurella multocida}

Probab=96.53  E-value=0.0094  Score=55.80  Aligned_cols=124  Identities=15%  Similarity=0.089  Sum_probs=69.5

Q ss_pred             CCceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHHHHHHHh-cC
Q 044162           91 MRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEAS-RL  169 (369)
Q Consensus        91 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~eFL~~ls-~~  169 (369)
                      .+|..+|||+||||+.....         ..........|+.+.      ...+..   .-....-||+.+||+.+. ..
T Consensus        56 g~~~avVfDIDgTlldn~~y---------~~~~~~~~~~f~~~~------w~~wv~---~g~~~~~pg~~ell~~L~~~G  117 (260)
T 3pct_A           56 GKKKAVVVDLDETMIDNSAY---------AGWQVQSGQGFSPKT------WTKWVD---ARQSAAIPGAVEFSNYVNANG  117 (260)
T ss_dssp             --CEEEEECCBTTTEECHHH---------HHHHHHHTCCCCHHH------HHHHHH---TTCCEECTTHHHHHHHHHHTT
T ss_pred             CCCCEEEEECCccCcCChhH---------HHhhcccCCCCCHHH------HHHHHH---cCCCCCCccHHHHHHHHHHCC
Confidence            45569999999999987632         111111111222100      000000   012567899999999997 67


Q ss_pred             ccEEEecCCcH----HHHHHHHHHhCCCCCcccceEEeeccccCccccccc--ccCC-CCCcEEEEeCCccccc
Q 044162          170 FEISVCTLGNR----EYATRAVKLLDPDCKYFNSRIITREDFKQKERKYLD--LVLG-QENSIVIVDDTESVWG  236 (369)
Q Consensus       170 yEi~I~T~g~~----~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~~~KdL~--~l~~-~~~~vvIvDD~~~~w~  236 (369)
                      +.|+|-|+-+.    .-+..-++.++-.. ++...++-|....   .|.-.  .+.. ..+-++.|.|+..-+.
T Consensus       118 ~~i~ivTgR~~~~~r~~T~~~L~~lGi~~-~~~~~Lilr~~~~---~K~~~r~~L~~~gy~iv~~iGD~~~Dl~  187 (260)
T 3pct_A          118 GTMFFVSNRRDDVEKAGTVDDMKRLGFTG-VNDKTLLLKKDKS---NKSVRFKQVEDMGYDIVLFVGDNLNDFG  187 (260)
T ss_dssp             CEEEEEEEEETTTSHHHHHHHHHHHTCCC-CSTTTEEEESSCS---SSHHHHHHHHTTTCEEEEEEESSGGGGC
T ss_pred             CeEEEEeCCCccccHHHHHHHHHHcCcCc-cccceeEecCCCC---ChHHHHHHHHhcCCCEEEEECCChHHcC
Confidence            99999998754    57777777776553 3432455454432   12211  1222 4556888888765443

>3n1u_A Hydrolase, HAD superfamily, subfamily III A; structural genomics, PSI-2; 1.80A {Legionella pneumophila} SCOP: c.108.1.0

Probab=96.49  E-value=0.00083  Score=59.29  Aligned_cols=80  Identities=9%  Similarity=0.034  Sum_probs=54.2

Q ss_pred             HHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCcccccccccCCCCCcEEEEeCCccccccCCC
Q 044162          162 FLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKYLDLVLGQENSIVIVDDTESVWGGRVE  240 (369)
Q Consensus       162 FL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~~~KdL~~l~~~~~~vvIvDD~~~~w~~~~~  240 (369)
                      -|+.+. ..+.++|.|++++..+..+++.++-.. +|...    ......+.+-++.++.+.+.+++|.|+..-...-..
T Consensus        54 ~l~~L~~~g~~~~ivTn~~~~~~~~~l~~lgl~~-~~~~~----kpk~~~~~~~~~~~~~~~~~~~~vGD~~~Di~~~~~  128 (191)
T 3n1u_A           54 GLKLLMAAGIQVAIITTAQNAVVDHRMEQLGITH-YYKGQ----VDKRSAYQHLKKTLGLNDDEFAYIGDDLPDLPLIQQ  128 (191)
T ss_dssp             HHHHHHHTTCEEEEECSCCSHHHHHHHHHHTCCE-EECSC----SSCHHHHHHHHHHHTCCGGGEEEEECSGGGHHHHHH
T ss_pred             HHHHHHHCCCeEEEEeCcChHHHHHHHHHcCCcc-ceeCC----CChHHHHHHHHHHhCCCHHHEEEECCCHHHHHHHHH
Confidence            377776 569999999999999999999988663 44321    011111233345567788899999999855544344


Q ss_pred             ceEEeC
Q 044162          241 NLITVG  246 (369)
Q Consensus       241 N~I~I~  246 (369)
                      .++.+.
T Consensus       129 ag~~~~  134 (191)
T 3n1u_A          129 VGLGVA  134 (191)
T ss_dssp             SSEEEE
T ss_pred             CCCEEE
Confidence            566653

>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*

Probab=96.46  E-value=0.0012  Score=59.24  Aligned_cols=52  Identities=12%  Similarity=0.063  Sum_probs=42.5

Q ss_pred             CceEEecccCCCCChhHHHHHHhcCC-EEEeccCCCceEEEecC-CCccccccc
Q 044162          317 GCTILFGDDDFEELPLTWSRAEEMGA-ICTLVTDASVTHVVSSN-TQSETFEWA  368 (369)
Q Consensus       317 g~~ivFSg~~p~~~p~lw~la~~~GA-~v~~~i~~~vTHvVa~~-~gT~K~~~a  368 (369)
                      .-.|++||+-+..+..+.+++++||+ .++.++++.+|||||.+ ..|.|+..|
T Consensus        11 ~~~~~~sgl~~~~~~~l~~~i~~lgG~~~~~~~~~~~THlv~~~~~rT~K~l~a   64 (199)
T 3u3z_A           11 TRTLVMTSMPSEKQNVVIQVVDKLKGFSIAPDVCETTTHVLSGKPLRTLNVLLG   64 (199)
T ss_dssp             CCEEEEESCCHHHHHHHHHHHHHHCSCEEESSCCTTEEEEEESSCCCBHHHHHH
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHHcCCcEEecCCCCCCeEEEECCCCCCHHHHHH
Confidence            45689999876655578889999965 78899999999999988 588888665

>3skx_A Copper-exporting P-type ATPase B; P1B-ATPase, ATP binding domain, copper(II) transporter, MEMB protein, hydrolase; 1.59A {Archaeoglobus fulgidus} PDB: 3sky_A*

Probab=96.38  E-value=0.011  Score=53.51  Aligned_cols=84  Identities=18%  Similarity=0.172  Sum_probs=56.2

Q ss_pred             EeCccHHHHHHHHhc-CccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCcccccccccCCCCCcEEEEeCCc
Q 044162          154 KLRPFVRSFLEEASR-LFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKYLDLVLGQENSIVIVDDTE  232 (369)
Q Consensus       154 klRPgl~eFL~~ls~-~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~~~KdL~~l~~~~~~vvIvDD~~  232 (369)
                      .++||+.++|+.+.+ .+.+.|.|++.+.++..+++.++... +|. .+++.+..  ...|.+..    .-.+++|-|+.
T Consensus       144 ~~~~~~~~~l~~l~~~g~~~~i~T~~~~~~~~~~~~~~gl~~-~f~-~~~~~~k~--~~~k~~~~----~~~~~~vGD~~  215 (280)
T 3skx_A          144 RIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGLDD-YFA-EVLPHEKA--EKVKEVQQ----KYVTAMVGDGV  215 (280)
T ss_dssp             EECTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTCSE-EEC-SCCGGGHH--HHHHHHHT----TSCEEEEECTT
T ss_pred             CCCHhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCChh-HhH-hcCHHHHH--HHHHHHHh----cCCEEEEeCCc
Confidence            789999999999975 69999999999999999999998763 563 23322211  11232221    12678999987


Q ss_pred             cccccCCCceEEe
Q 044162          233 SVWGGRVENLITV  245 (369)
Q Consensus       233 ~~w~~~~~N~I~I  245 (369)
                      .=...-...++.|
T Consensus       216 nDi~~~~~Ag~~v  228 (280)
T 3skx_A          216 NDAPALAQADVGI  228 (280)
T ss_dssp             TTHHHHHHSSEEE
T ss_pred             hhHHHHHhCCceE
Confidence            4443323344544

>2coe_A Deoxynucleotidyltransferase, terminal variant; BRCT domain, DNA polymerase, teminal deoxynucleotidyltransferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.29  E-value=0.0025  Score=52.82  Aligned_cols=47  Identities=19%  Similarity=0.139  Sum_probs=36.0

Q ss_pred             hhhcCceEEecccCCCC--C-hhHHHHHHhcCCEEEeccCCCceEEEecCC
Q 044162          313 RILMGCTILFGDDDFEE--L-PLTWSRAEEMGAICTLVTDASVTHVVSSNT  360 (369)
Q Consensus       313 ~VL~g~~ivFSg~~p~~--~-p~lw~la~~~GA~v~~~i~~~vTHvVa~~~  360 (369)
                      ..|+||.|.|-..- .+  + .-+-++|...||+|.+++++.|||||+.+.
T Consensus        19 ~~F~g~~iy~v~~~-~g~~R~~~l~~l~r~~G~~V~~~ls~~VTHVVve~~   68 (120)
T 2coe_A           19 IKFQDLVVFILEKK-MGTTRRALLMELARRKGFRVENELSDSVTHIVAENN   68 (120)
T ss_dssp             CSCTTCEEEEECTT-TCHHHHHHHHHHHHHHTCEECSSCCTTCCEEEESSC
T ss_pred             cccCCeEEEEeecc-cchHHHHHHHHHHHHcCCEEeeccCCCcCEEEecCC
Confidence            57899999983211 11  1 155669999999999999999999999744

>3ocu_A Lipoprotein E; hydrolase, outer membrane; HET: NMN; 1.35A {Haemophilus influenzae} PDB: 3ocv_A* 3ocw_A* 3ocx_A* 3ocz_A* 3ocy_A* 3sf0_A* 2hlk_A 2hll_A 3et4_A 3et5_A

Probab=96.29  E-value=0.01  Score=55.55  Aligned_cols=125  Identities=14%  Similarity=0.067  Sum_probs=70.9

Q ss_pred             cCCceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHHHHHHHh-c
Q 044162           90 RMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEAS-R  168 (369)
Q Consensus        90 ~~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~eFL~~ls-~  168 (369)
                      ..+|..+|||+||||+.....         ..........|....-   ...+.      .-....-||+.+||+.+. .
T Consensus        55 ~~~~~avVfDIDgTlldn~~y---------~~~~~~~~~~f~~~~w---~~wv~------~~~~~~~pG~~ell~~L~~~  116 (262)
T 3ocu_A           55 KGKKKAVVADLNETMLDNSPY---------AGWQVQNNKPFDGKDW---TRWVD------ARQSRAVPGAVEFNNYVNSH  116 (262)
T ss_dssp             TTCEEEEEECCBTTTEECHHH---------HHHHHHHTCCCCHHHH---HHHHH------HTCCEECTTHHHHHHHHHHT
T ss_pred             CCCCeEEEEECCCcCCCCchh---------hhhhccccccCCHHHH---HHHHH------cCCCCCCccHHHHHHHHHHC
Confidence            467889999999999987631         1111111111211000   00000      012567899999999996 6


Q ss_pred             CccEEEecCCcH----HHHHHHHHHhCCCCCcccceEEeeccccCccccccc--ccC-CCCCcEEEEeCCccccc
Q 044162          169 LFEISVCTLGNR----EYATRAVKLLDPDCKYFNSRIITREDFKQKERKYLD--LVL-GQENSIVIVDDTESVWG  236 (369)
Q Consensus       169 ~yEi~I~T~g~~----~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~~~KdL~--~l~-~~~~~vvIvDD~~~~w~  236 (369)
                      .+.|+|-|+.+.    .-+..-++.++-.. ++...++.|.....   |.-.  .+. .+..-++.|.|...-+.
T Consensus       117 G~ki~ivTgR~~~~~r~~T~~~L~~lGi~~-~~~~~Lilr~~~~~---K~~~r~~l~~~Gy~iv~~vGD~~~Dl~  187 (262)
T 3ocu_A          117 NGKVFYVTNRKDSTEKSGTIDDMKRLGFNG-VEESAFYLKKDKSA---KAARFAEIEKQGYEIVLYVGDNLDDFG  187 (262)
T ss_dssp             TEEEEEEEEEETTTTHHHHHHHHHHHTCSC-CSGGGEEEESSCSC---CHHHHHHHHHTTEEEEEEEESSGGGGC
T ss_pred             CCeEEEEeCCCccchHHHHHHHHHHcCcCc-ccccceeccCCCCC---hHHHHHHHHhcCCCEEEEECCChHHhc
Confidence            799999998754    56666677776542 33335665654322   2211  111 12345888888765554

>2gfh_A Haloacid dehalogenase-like hydrolase domain conta; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.90A {Mus musculus} SCOP: c.108.1.6 PDB: 2w4m_A

Probab=96.27  E-value=0.0047  Score=56.58  Aligned_cols=77  Identities=23%  Similarity=0.292  Sum_probs=62.0

Q ss_pred             EEeCccHHHHHHHHhcCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCcEE
Q 044162          153 VKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENSIV  226 (369)
Q Consensus       153 vklRPgl~eFL~~ls~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~vv  226 (369)
                      +.+.||+.++|+.+.+.+.++|.|++.+.++..+++.++.. .+|. .+++.++....      +.+-++.++.+++.++
T Consensus       120 ~~~~~g~~~~L~~L~~~~~l~i~Tn~~~~~~~~~l~~~gl~-~~f~-~i~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~  197 (260)
T 2gfh_A          120 MILADDVKAMLTELRKEVRLLLLTNGDRQTQREKIEACACQ-SYFD-AIVIGGEQKEEKPAPSIFYHCCDLLGVQPGDCV  197 (260)
T ss_dssp             CCCCHHHHHHHHHHHTTSEEEEEECSCHHHHHHHHHHHTCG-GGCS-EEEEGGGSSSCTTCHHHHHHHHHHHTCCGGGEE
T ss_pred             CCCCcCHHHHHHHHHcCCcEEEEECcChHHHHHHHHhcCHH-hhhh-eEEecCCCCCCCCCHHHHHHHHHHcCCChhhEE
Confidence            46789999999999988999999999999999999999876 4785 46656655421      3344566778889999


Q ss_pred             EEeCC
Q 044162          227 IVDDT  231 (369)
Q Consensus       227 IvDD~  231 (369)
                      +|+|+
T Consensus       198 ~vGDs  202 (260)
T 2gfh_A          198 MVGDT  202 (260)
T ss_dssp             EEESC
T ss_pred             EECCC
Confidence            99995

>2i33_A Acid phosphatase; HAD superfamily, hydrolase; 1.57A {Bacillus anthracis} PDB: 2i34_A

Probab=96.23  E-value=0.0088  Score=55.64  Aligned_cols=124  Identities=15%  Similarity=0.120  Sum_probs=68.3

Q ss_pred             cCCceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHHHHHHHh-c
Q 044162           90 RMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEAS-R  168 (369)
Q Consensus        90 ~~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~eFL~~ls-~  168 (369)
                      ..++..+|+||||||+.+...         ..........| .+.   ...+..      .--..+.||+.++|+.+. +
T Consensus        56 ~~~~kavifDlDGTLld~~~~---------~~~~~~~~~~~-~~~---~~~~~~------~~~~~~~pg~~e~L~~L~~~  116 (258)
T 2i33_A           56 TEKKPAIVLDLDETVLDNSPH---------QAMSVKTGKGY-PYK---WDDWIN------KAEAEALPGSIDFLKYTESK  116 (258)
T ss_dssp             CSSEEEEEECSBTTTEECHHH---------HHHHHHHSCCT-TTT---HHHHHH------HCCCEECTTHHHHHHHHHHT
T ss_pred             CCCCCEEEEeCcccCcCCHHH---------HHHHHhcccch-HHH---HHHHHH------cCCCCcCccHHHHHHHHHHC
Confidence            567789999999999987521         11111111111 000   000000      001456799999999997 6


Q ss_pred             CccEEEecCCc---HHHHHHHHHHhCCCC-CcccceEEeeccccCcccccccc--cCCCCCcEEEEeCCccccc
Q 044162          169 LFEISVCTLGN---REYATRAVKLLDPDC-KYFNSRIITREDFKQKERKYLDL--VLGQENSIVIVDDTESVWG  236 (369)
Q Consensus       169 ~yEi~I~T~g~---~~YA~~i~~~lDp~~-~~f~~Ri~srd~~~~~~~KdL~~--l~~~~~~vvIvDD~~~~w~  236 (369)
                      .+.|+|.|+..   +..+...++.++-.. .+| .-+++.++ .  +.++...  +......+++|.|+..-..
T Consensus       117 Gi~i~iaTnr~~~~~~~~~~~L~~~Gl~~v~~~-~vi~~~~~-~--~K~~~~~~~~~~~~~~~l~VGDs~~Di~  186 (258)
T 2i33_A          117 GVDIYYISNRKTNQLDATIKNLERVGAPQATKE-HILLQDPK-E--KGKEKRRELVSQTHDIVLFFGDNLSDFT  186 (258)
T ss_dssp             TCEEEEEEEEEGGGHHHHHHHHHHHTCSSCSTT-TEEEECTT-C--CSSHHHHHHHHHHEEEEEEEESSGGGST
T ss_pred             CCEEEEEcCCchhHHHHHHHHHHHcCCCcCCCc-eEEECCCC-C--CCcHHHHHHHHhCCCceEEeCCCHHHhc
Confidence            69999999998   556666677766552 234 33443332 1  1122211  1112334888999875443

>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*

Probab=96.11  E-value=0.0011  Score=69.80  Aligned_cols=56  Identities=16%  Similarity=0.114  Sum_probs=0.0

Q ss_pred             hhcCceEEecccCCCCChhHHHHHHhcCCEEEeccCCCceEEEecCCCcccccccC
Q 044162          314 ILMGCTILFGDDDFEELPLTWSRAEEMGAICTLVTDASVTHVVSSNTQSETFEWAE  369 (369)
Q Consensus       314 VL~g~~ivFSg~~p~~~p~lw~la~~~GA~v~~~i~~~vTHvVa~~~gT~K~~~a~  369 (369)
                      .|.|.++||+|.++..+..+..+++++||+|+..++.+|++||+......|.+.|+
T Consensus       587 ~l~G~~~v~TG~l~~~R~e~~~~i~~~Ggkv~~sVSkkTd~lV~G~~~gsKl~KA~  642 (667)
T 1dgs_A          587 LLSGLTFVLTGELSRPREEVKALLGRLGAKVTDSVSRKTSYLVVGENPGSKLEKAR  642 (667)
T ss_dssp             --------------------------------------------------------
T ss_pred             ccCCCEEEEeCCCCCCHHHHHHHHHHcCCEEcCcccCCeeEEEECCCCChHHHHHH
Confidence            48999999999998744588899999999999999999999999987778988874

>1rku_A Homoserine kinase; phosphoserine phosphatase, phosphoserine:homoserine phosphotransferase, THRH, phosphoserine phosphoryl donor; 1.47A {Pseudomonas aeruginosa} SCOP: c.108.1.11 PDB: 1rkv_A

Probab=96.06  E-value=0.0052  Score=53.38  Aligned_cols=93  Identities=10%  Similarity=0.019  Sum_probs=66.6

Q ss_pred             EEeCccHHHHHHHHhcCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeecccc-------C--cccccccccCCCCC
Q 044162          153 VKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFK-------Q--KERKYLDLVLGQEN  223 (369)
Q Consensus       153 vklRPgl~eFL~~ls~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~-------~--~~~KdL~~l~~~~~  223 (369)
                      +.++||+.++|+.+.+.|.++|.|++.+.++..+++.++-.. +|.+.+.+.++..       .  .+.+-++.++...+
T Consensus        68 ~~~~~g~~~~l~~l~~~~~~~i~s~~~~~~~~~~l~~~gl~~-~f~~~~~~~~~~~~~~~~~p~p~~~~~~l~~l~~~~~  146 (206)
T 1rku_A           68 LKPLEGAVEFVDWLRERFQVVILSDTFYEFSQPLMRQLGFPT-LLCHKLEIDDSDRVVGYQLRQKDPKRQSVIAFKSLYY  146 (206)
T ss_dssp             CCCCTTHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTCCC-EEEEEEEECTTSCEEEEECCSSSHHHHHHHHHHHTTC
T ss_pred             cCCCccHHHHHHHHHhcCcEEEEECChHHHHHHHHHHcCCcc-eecceeEEcCCceEEeeecCCCchHHHHHHHHHhcCC
Confidence            567999999999998669999999999999999999988774 7755555443321       0  12233445555678


Q ss_pred             cEEEEeCCccccccCCCceEEeC
Q 044162          224 SIVIVDDTESVWGGRVENLITVG  246 (369)
Q Consensus       224 ~vvIvDD~~~~w~~~~~N~I~I~  246 (369)
                      .+++|+|+..-.......++.+-
T Consensus       147 ~~~~iGD~~~Di~~a~~aG~~~~  169 (206)
T 1rku_A          147 RVIAAGDSYNDTTMLSEAHAGIL  169 (206)
T ss_dssp             EEEEEECSSTTHHHHHHSSEEEE
T ss_pred             EEEEEeCChhhHHHHHhcCccEE
Confidence            99999999754443334566543

>3qnm_A Haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 1.70A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0

Probab=96.04  E-value=0.0091  Score=52.27  Aligned_cols=78  Identities=22%  Similarity=0.301  Sum_probs=63.1

Q ss_pred             EEeCccHHHHHHHHhcCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCcEE
Q 044162          153 VKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENSIV  226 (369)
Q Consensus       153 vklRPgl~eFL~~ls~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~vv  226 (369)
                      ..+.|++.++|+.+.+.|.++|.|++.+.++..+++.++... +|. .+++.++....      +.+-++.++.+.+.++
T Consensus       106 ~~~~~~~~~~l~~l~~g~~~~i~sn~~~~~~~~~l~~~~l~~-~f~-~~~~~~~~~~~kp~~~~~~~~~~~lgi~~~~~~  183 (240)
T 3qnm_A          106 SGLMPHAKEVLEYLAPQYNLYILSNGFRELQSRKMRSAGVDR-YFK-KIILSEDLGVLKPRPEIFHFALSATQSELRESL  183 (240)
T ss_dssp             CCBSTTHHHHHHHHTTTSEEEEEECSCHHHHHHHHHHHTCGG-GCS-EEEEGGGTTCCTTSHHHHHHHHHHTTCCGGGEE
T ss_pred             CCcCccHHHHHHHHHcCCeEEEEeCCchHHHHHHHHHcChHh-hce-eEEEeccCCCCCCCHHHHHHHHHHcCCCcccEE
Confidence            567899999999999889999999999999999999987663 674 56666655432      2334566788899999


Q ss_pred             EEeCCc
Q 044162          227 IVDDTE  232 (369)
Q Consensus       227 IvDD~~  232 (369)
                      .|+|++
T Consensus       184 ~iGD~~  189 (240)
T 3qnm_A          184 MIGDSW  189 (240)
T ss_dssp             EEESCT
T ss_pred             EECCCc
Confidence            999995

>3e58_A Putative beta-phosphoglucomutase; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.86A {Streptococcus thermophilus lmg 18311}

Probab=96.04  E-value=0.01  Score=50.78  Aligned_cols=82  Identities=21%  Similarity=0.242  Sum_probs=64.2

Q ss_pred             EEeCccHHHHHHHHhc-CccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCcE
Q 044162          153 VKLRPFVRSFLEEASR-LFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENSI  225 (369)
Q Consensus       153 vklRPgl~eFL~~ls~-~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~v  225 (369)
                      +..+||+.++|+.+.+ .+.++|.|++.+.++..+++.++-.. +|. .+++.++....      +.+-++.++.+.+.+
T Consensus        88 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~-~f~-~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~  165 (214)
T 3e58_A           88 ELIFPDVLKVLNEVKSQGLEIGLASSSVKADIFRALEENRLQG-FFD-IVLSGEEFKESKPNPEIYLTALKQLNVQASRA  165 (214)
T ss_dssp             HHBCTTHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCGG-GCS-EEEEGGGCSSCTTSSHHHHHHHHHHTCCGGGE
T ss_pred             CCcCchHHHHHHHHHHCCCCEEEEeCCcHHHHHHHHHHcCcHh-hee-eEeecccccCCCCChHHHHHHHHHcCCChHHe
Confidence            4689999999999985 49999999999999999999988764 674 46666654431      233455677888999


Q ss_pred             EEEeCCccccc
Q 044162          226 VIVDDTESVWG  236 (369)
Q Consensus       226 vIvDD~~~~w~  236 (369)
                      +.|+|+..-..
T Consensus       166 ~~iGD~~~Di~  176 (214)
T 3e58_A          166 LIIEDSEKGIA  176 (214)
T ss_dssp             EEEECSHHHHH
T ss_pred             EEEeccHhhHH
Confidence            99999975443

>2ah5_A COG0546: predicted phosphatases; MCSG, structural genomics, hydrola haloacid dehalogenase-like, PSI; 1.74A {Streptococcus pneumoniae} SCOP: c.108.1.6

Probab=96.01  E-value=0.0087  Score=52.44  Aligned_cols=90  Identities=21%  Similarity=0.195  Sum_probs=67.7

Q ss_pred             EEeCccHHHHHHHHhcCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccC----cccccccccCCCCCcEEEE
Q 044162          153 VKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQ----KERKYLDLVLGQENSIVIV  228 (369)
Q Consensus       153 vklRPgl~eFL~~ls~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~----~~~KdL~~l~~~~~~vvIv  228 (369)
                      +.+.||+.++|+.+.+.|.+.|.|++.+.++..+++.++-. .+|. .+++.+....    .+.+-++.++.+++.+++|
T Consensus        83 ~~~~~g~~~~l~~L~~~~~l~i~T~~~~~~~~~~l~~~gl~-~~f~-~i~~~~~~~Kp~p~~~~~~~~~lg~~p~~~~~v  160 (210)
T 2ah5_A           83 AQLFPQIIDLLEELSSSYPLYITTTKDTSTAQDMAKNLEIH-HFFD-GIYGSSPEAPHKADVIHQALQTHQLAPEQAIII  160 (210)
T ss_dssp             CEECTTHHHHHHHHHTTSCEEEEEEEEHHHHHHHHHHTTCG-GGCS-EEEEECSSCCSHHHHHHHHHHHTTCCGGGEEEE
T ss_pred             CCCCCCHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCch-hhee-eeecCCCCCCCChHHHHHHHHHcCCCcccEEEE
Confidence            56789999999999888999999999999999999999876 4784 4665551111    1345566788889999999


Q ss_pred             eCCccccccCCCceEE
Q 044162          229 DDTESVWGGRVENLIT  244 (369)
Q Consensus       229 DD~~~~w~~~~~N~I~  244 (369)
                      +|++.-.......|+.
T Consensus       161 gDs~~Di~~a~~aG~~  176 (210)
T 2ah5_A          161 GDTKFDMLGARETGIQ  176 (210)
T ss_dssp             ESSHHHHHHHHHHTCE
T ss_pred             CCCHHHHHHHHHCCCc
Confidence            9998544433344554

>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*

Probab=95.98  E-value=0.0032  Score=58.86  Aligned_cols=61  Identities=13%  Similarity=0.106  Sum_probs=44.3

Q ss_pred             HHHHHHhhhcCceEE-ecccCCCCChhHHHHHHhcCCEEEeccCCCceEEEecCCCccccccc
Q 044162          307 LAKIRSRILMGCTIL-FGDDDFEELPLTWSRAEEMGAICTLVTDASVTHVVSSNTQSETFEWA  368 (369)
Q Consensus       307 l~~~r~~VL~g~~iv-FSg~~p~~~p~lw~la~~~GA~v~~~i~~~vTHvVa~~~gT~K~~~a  368 (369)
                      |.....++|+|+.|. +||.-......+.++..++||+++.+.++.+||+||.+. |.|++.|
T Consensus         3 ~~~~~s~lF~G~~f~V~sg~~~~~k~~L~~lI~~~GG~v~~n~~~~t~~iIa~~~-~~k~~~~   64 (263)
T 3ii6_X            3 MGSKISNIFEDVEFCVMSGTDSQPKPDLENRIAEFGGYIVQNPGPDTYCVIAGSE-NIRVKNI   64 (263)
T ss_dssp             ---CCCCTTTTCEEEECCCC--CCHHHHHHHHHHTTCEECSSCCTTEEEEECSSC-CHHHHHH
T ss_pred             CCCcCcccCCCeEEEEEcCCCCCCHHHHHHHHHHcCCEEEecCCCCEEEEEeCCC-CHHHHHH
Confidence            445567899999995 577322123499999999999999999988888888765 5777654

>2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.97  E-value=0.0063  Score=48.72  Aligned_cols=48  Identities=13%  Similarity=0.171  Sum_probs=39.3

Q ss_pred             HhhhcCceEEecccCCCCChhHHHHHHhcCCEEEec-----------cCCCceEEEecCCC
Q 044162          312 SRILMGCTILFGDDDFEELPLTWSRAEEMGAICTLV-----------TDASVTHVVSSNTQ  361 (369)
Q Consensus       312 ~~VL~g~~ivFSg~~p~~~p~lw~la~~~GA~v~~~-----------i~~~vTHvVa~~~g  361 (369)
                      ..+|+|+++.+++-.|.  ..+..+.+++|++++.+           .++.+||+|+.++.
T Consensus        10 ~~LF~g~~F~i~~e~p~--~~le~~I~~~GG~v~~~~~~~~g~~~~~~~~~iTh~I~drp~   68 (100)
T 2ep8_A           10 KKLFEGLKFFLNREVPR--EALAFIIRSFGGEVSWDKSLCIGATYDVTDSRITHQIVDRPG   68 (100)
T ss_dssp             CCTTSSCEEECCSSSCH--HHHHHHHHHTTCEEECCTTTSSCCCSCTTCTTCCEEECSCTT
T ss_pred             HHHcCCcEEEEecCCCH--HHHHHHHHHcCCEEEeccccccCcccccCCCceEEEEecccc
Confidence            46899999999885543  37888999999999876           35789999999864

>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic unknown function; 2.20A {Bacteroides thetaiotaomicron} SCOP: c.108.1.25

Probab=95.93  E-value=0.022  Score=48.38  Aligned_cols=39  Identities=13%  Similarity=0.150  Sum_probs=31.9

Q ss_pred             CccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCC
Q 044162          156 RPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDC  194 (369)
Q Consensus       156 RPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~  194 (369)
                      -|++.+.|+.+. +.+.++|+|.-+......+++.++..|
T Consensus        26 ~~~~~~al~~l~~~G~~iii~TgR~~~~~~~~~~~l~~~g   65 (142)
T 2obb_A           26 IPFAVETLKLLQQEKHRLILWSVREGELLDEAIEWCRARG   65 (142)
T ss_dssp             CTTHHHHHHHHHHTTCEEEECCSCCHHHHHHHHHHHHTTT
T ss_pred             CHHHHHHHHHHHHCCCEEEEEeCCCcccHHHHHHHHHHcC
Confidence            478999999996 679999999988777777777777665

>3sd7_A Putative phosphatase; structural genomics, haloacid dehalogenase-like hydrolase, H center for structural genomics of infectious diseases; HET: PGE; 1.70A {Clostridium difficile}

Probab=95.89  E-value=0.0093  Score=52.85  Aligned_cols=89  Identities=20%  Similarity=0.163  Sum_probs=67.1

Q ss_pred             EEeCccHHHHHHHHhc-CccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCC-CCc
Q 044162          153 VKLRPFVRSFLEEASR-LFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQ-ENS  224 (369)
Q Consensus       153 vklRPgl~eFL~~ls~-~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~-~~~  224 (369)
                      ..++||+.++|+.+.+ .+.++|.|++.+.++..+++.++-.. +|. .+++.++....      +.+-++.++.+ .+.
T Consensus       109 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~-~f~-~~~~~~~~~~~kp~~~~~~~~~~~~g~~~~~~  186 (240)
T 3sd7_A          109 NKIYENMKEILEMLYKNGKILLVATSKPTVFAETILRYFDIDR-YFK-YIAGSNLDGTRVNKNEVIQYVLDLCNVKDKDK  186 (240)
T ss_dssp             CEECTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHTTCGG-GCS-EEEEECTTSCCCCHHHHHHHHHHHHTCCCGGG
T ss_pred             cccCccHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHcCcHh-hEE-EEEeccccCCCCCCHHHHHHHHHHcCCCCCCc
Confidence            5789999999999985 49999999999999999999988764 675 46666665432      22335567778 999


Q ss_pred             EEEEeCCccccccCCCceE
Q 044162          225 IVIVDDTESVWGGRVENLI  243 (369)
Q Consensus       225 vvIvDD~~~~w~~~~~N~I  243 (369)
                      ++.|+|++.-.......++
T Consensus       187 ~i~vGD~~~Di~~a~~aG~  205 (240)
T 3sd7_A          187 VIMVGDRKYDIIGAKKIGI  205 (240)
T ss_dssp             EEEEESSHHHHHHHHHHTC
T ss_pred             EEEECCCHHHHHHHHHCCC
Confidence            9999999854443333344

>2nyv_A Pgpase, PGP, phosphoglycolate phosphatase; structural genomics, PSI-2, protein structure initiative; 2.10A {Aquifex aeolicus} PDB: 2yy6_A

Probab=95.88  E-value=0.012  Score=52.00  Aligned_cols=91  Identities=21%  Similarity=0.273  Sum_probs=66.4

Q ss_pred             EEEeCccHHHHHHHHhc-CccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCc
Q 044162          152 LVKLRPFVRSFLEEASR-LFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENS  224 (369)
Q Consensus       152 ~vklRPgl~eFL~~ls~-~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~  224 (369)
                      .+.+.||+.++|+.+.+ .+.++|.|++.+.++..+++.++.. .+|. .+++.++....      +.+-++.++.+.+.
T Consensus        81 ~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~-~~f~-~i~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~  158 (222)
T 2nyv_A           81 YTKPYPEIPYTLEALKSKGFKLAVVSNKLEELSKKILDILNLS-GYFD-LIVGGDTFGEKKPSPTPVLKTLEILGEEPEK  158 (222)
T ss_dssp             SCEECTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTTCG-GGCS-EEECTTSSCTTCCTTHHHHHHHHHHTCCGGG
T ss_pred             cCccCCCHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCH-HHhe-EEEecCcCCCCCCChHHHHHHHHHhCCCchh
Confidence            36789999999999975 5999999999999999999998865 4674 46666554321      22334556778899


Q ss_pred             EEEEeCCccccccCCCceEE
Q 044162          225 IVIVDDTESVWGGRVENLIT  244 (369)
Q Consensus       225 vvIvDD~~~~w~~~~~N~I~  244 (369)
                      +++|+|+..-.......++.
T Consensus       159 ~~~vGD~~~Di~~a~~aG~~  178 (222)
T 2nyv_A          159 ALIVGDTDADIEAGKRAGTK  178 (222)
T ss_dssp             EEEEESSHHHHHHHHHHTCE
T ss_pred             EEEECCCHHHHHHHHHCCCe
Confidence            99999997544332333433

>2hi0_A Putative phosphoglycolate phosphatase; YP_619066.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.51A {Lactobacillus delbrueckii}

Probab=95.86  E-value=0.011  Score=52.71  Aligned_cols=89  Identities=11%  Similarity=0.091  Sum_probs=66.8

Q ss_pred             EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCcE
Q 044162          153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENSI  225 (369)
Q Consensus       153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~v  225 (369)
                      +.+.||+.++|+.+. +.+.+.|.|++.+.++..+++.++..  +|. .+++.++....      +.+-++.++.+++.+
T Consensus       109 ~~~~~g~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~l~--~f~-~~~~~~~~~~~Kp~p~~~~~~~~~l~~~~~~~  185 (240)
T 2hi0_A          109 TGPFPGILDLMKNLRQKGVKLAVVSNKPNEAVQVLVEELFPG--SFD-FALGEKSGIRRKPAPDMTSECVKVLGVPRDKC  185 (240)
T ss_dssp             CEECTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHHSTT--TCS-EEEEECTTSCCTTSSHHHHHHHHHHTCCGGGE
T ss_pred             CCcCCCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCc--cee-EEEecCCCCCCCCCHHHHHHHHHHcCCCHHHe
Confidence            577899999999997 56999999999999999999998865  674 57766654321      334456678889999


Q ss_pred             EEEeCCccccccCCCceEE
Q 044162          226 VIVDDTESVWGGRVENLIT  244 (369)
Q Consensus       226 vIvDD~~~~w~~~~~N~I~  244 (369)
                      ++|.|++.-.......++.
T Consensus       186 ~~vGDs~~Di~~a~~aG~~  204 (240)
T 2hi0_A          186 VYIGDSEIDIQTARNSEMD  204 (240)
T ss_dssp             EEEESSHHHHHHHHHTTCE
T ss_pred             EEEcCCHHHHHHHHHCCCe
Confidence            9999998544333334443

>3s6j_A Hydrolase, haloacid dehalogenase-like family; structural genomics, PSI-2; 2.20A {Pseudomonas syringae PV}

Probab=95.80  E-value=0.015  Score=50.77  Aligned_cols=89  Identities=17%  Similarity=0.078  Sum_probs=66.9

Q ss_pred             EEeCccHHHHHHHHhc-CccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCcE
Q 044162          153 VKLRPFVRSFLEEASR-LFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENSI  225 (369)
Q Consensus       153 vklRPgl~eFL~~ls~-~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~v  225 (369)
                      ....||+.++|+.+.+ .+.++|.|++...++..+++.++-.. +|. .+++.++....      +.+-++.++.+.+.+
T Consensus        90 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~-~f~-~~~~~~~~~~~kp~~~~~~~~~~~l~~~~~~~  167 (233)
T 3s6j_A           90 IIALPGAVELLETLDKENLKWCIATSGGIDTATINLKALKLDI-NKI-NIVTRDDVSYGKPDPDLFLAAAKKIGAPIDEC  167 (233)
T ss_dssp             CEECTTHHHHHHHHHHTTCCEEEECSSCHHHHHHHHHTTTCCT-TSS-CEECGGGSSCCTTSTHHHHHHHHHTTCCGGGE
T ss_pred             CccCCCHHHHHHHHHHCCCeEEEEeCCchhhHHHHHHhcchhh-hhh-eeeccccCCCCCCChHHHHHHHHHhCCCHHHE
Confidence            5789999999999985 59999999999999999999887764 674 46656654421      234455677889999


Q ss_pred             EEEeCCccccccCCCceE
Q 044162          226 VIVDDTESVWGGRVENLI  243 (369)
Q Consensus       226 vIvDD~~~~w~~~~~N~I  243 (369)
                      +.|+|+..-.......|+
T Consensus       168 i~iGD~~~Di~~a~~aG~  185 (233)
T 3s6j_A          168 LVIGDAIWDMLAARRCKA  185 (233)
T ss_dssp             EEEESSHHHHHHHHHTTC
T ss_pred             EEEeCCHHhHHHHHHCCC
Confidence            999999855543333344

>2hoq_A Putative HAD-hydrolase PH1655; haloacid dehalogenase, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.70A {Pyrococcus horikoshii}

Probab=95.80  E-value=0.01  Score=52.79  Aligned_cols=78  Identities=21%  Similarity=0.210  Sum_probs=61.4

Q ss_pred             EEeCccHHHHHHHHhc-CccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCcE
Q 044162          153 VKLRPFVRSFLEEASR-LFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENSI  225 (369)
Q Consensus       153 vklRPgl~eFL~~ls~-~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~v  225 (369)
                      +...||+.++|+.+.+ .+.++|.|++.+.++..+++.++.. .+|. .+++.++....      +.+-++.++.+.+.+
T Consensus        93 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~l~-~~f~-~~~~~~~~~~~Kp~~~~~~~~~~~~g~~~~~~  170 (241)
T 2hoq_A           93 LREVPGARKVLIRLKELGYELGIITDGNPVKQWEKILRLELD-DFFE-HVIISDFEGVKKPHPKIFKKALKAFNVKPEEA  170 (241)
T ss_dssp             CCBCTTHHHHHHHHHHHTCEEEEEECSCHHHHHHHHHHTTCG-GGCS-EEEEGGGGTCCTTCHHHHHHHHHHHTCCGGGE
T ss_pred             CCCCccHHHHHHHHHHCCCEEEEEECCCchhHHHHHHHcCcH-hhcc-EEEEeCCCCCCCCCHHHHHHHHHHcCCCcccE
Confidence            4578999999999985 5999999999999999999998866 4674 46666655431      223355677788999


Q ss_pred             EEEeCCc
Q 044162          226 VIVDDTE  232 (369)
Q Consensus       226 vIvDD~~  232 (369)
                      +.|+|+.
T Consensus       171 i~iGD~~  177 (241)
T 2hoq_A          171 LMVGDRL  177 (241)
T ss_dssp             EEEESCT
T ss_pred             EEECCCc
Confidence            9999997

>3ed5_A YFNB; APC60080, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.72A {Bacillus subtilis} PDB: 3i76_A

Probab=95.76  E-value=0.016  Score=50.70  Aligned_cols=78  Identities=13%  Similarity=0.129  Sum_probs=62.4

Q ss_pred             EEeCccHHHHHHHHhcCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccC-CCCCcE
Q 044162          153 VKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVL-GQENSI  225 (369)
Q Consensus       153 vklRPgl~eFL~~ls~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~-~~~~~v  225 (369)
                      ....||+.++|+.+.+.+.+.|.|++.+.++..+++.++-. .+|. .+++.++....      +.+-++.++ .+.+.+
T Consensus       102 ~~~~~~~~~~l~~l~~~~~~~i~t~~~~~~~~~~l~~~~l~-~~f~-~~~~~~~~~~~kp~~~~~~~~~~~~g~~~~~~~  179 (238)
T 3ed5_A          102 HQLIDGAFDLISNLQQQFDLYIVTNGVSHTQYKRLRDSGLF-PFFK-DIFVSEDTGFQKPMKEYFNYVFERIPQFSAEHT  179 (238)
T ss_dssp             CCBCTTHHHHHHHHHTTSEEEEEECSCHHHHHHHHHHTTCG-GGCS-EEEEGGGTTSCTTCHHHHHHHHHTSTTCCGGGE
T ss_pred             CCCCccHHHHHHHHHhcCeEEEEeCCCHHHHHHHHHHcChH-hhhh-eEEEecccCCCCCChHHHHHHHHHcCCCChhHe
Confidence            56789999999999866999999999999999999998766 4674 46666655432      233456778 789999


Q ss_pred             EEEeCCc
Q 044162          226 VIVDDTE  232 (369)
Q Consensus       226 vIvDD~~  232 (369)
                      +.|+|+.
T Consensus       180 i~vGD~~  186 (238)
T 3ed5_A          180 LIIGDSL  186 (238)
T ss_dssp             EEEESCT
T ss_pred             EEECCCc
Confidence            9999997

>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*

Probab=95.74  E-value=0.016  Score=54.07  Aligned_cols=51  Identities=12%  Similarity=0.062  Sum_probs=39.1

Q ss_pred             HHhhhcCceEEecccCCCCC--------h--hHHHHHHhcCCEEEeccCCCceEEEecCCC
Q 044162          311 RSRILMGCTILFGDDDFEEL--------P--LTWSRAEEMGAICTLVTDASVTHVVSSNTQ  361 (369)
Q Consensus       311 r~~VL~g~~ivFSg~~p~~~--------p--~lw~la~~~GA~v~~~i~~~vTHvVa~~~g  361 (369)
                      +..+|+||++.|.+.-....        +  .+..+...+||+|+.++++.|||||+.+..
T Consensus       161 ~~~lF~~~~vy~~~~~~~~~~~~~i~~~~l~~~~~~i~~~GG~v~~~l~~~vTHVVv~~~~  221 (263)
T 3ii6_X          161 PLSMFRRHTVYLDSYAVINDLSTKNEGTRLAIKALELRFHGAKVVSCLAEGVSHVIIGEDH  221 (263)
T ss_dssp             GGGTTTTCEEEECCBSSTTCGGGBCCSSHHHHHHHHHHHTTCEEESSCCTTCCEEEECSCC
T ss_pred             cchhhCCeEEEEecccccCCcccccchhHHHHHHHHHHccCCEEecCCCCCceEEEECCCC
Confidence            45689999999976432211        1  335678999999999999999999998743

>2hsz_A Novel predicted phosphatase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: UNL; 1.90A {Haemophilus somnus 129PT} SCOP: c.108.1.6

Probab=95.67  E-value=0.018  Score=51.64  Aligned_cols=82  Identities=15%  Similarity=0.110  Sum_probs=62.8

Q ss_pred             EEeCccHHHHHHHHhc-CccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCcE
Q 044162          153 VKLRPFVRSFLEEASR-LFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENSI  225 (369)
Q Consensus       153 vklRPgl~eFL~~ls~-~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~v  225 (369)
                      +.+.||+.++|+.+.+ .+.++|.|++.+.++..+++.++.. .+|. .+++.+++...      +.+-++.++.+.+.+
T Consensus       113 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~gl~-~~f~-~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~  190 (243)
T 2hsz_A          113 SRLYPNVKETLEALKAQGYILAVVTNKPTKHVQPILTAFGID-HLFS-EMLGGQSLPEIKPHPAPFYYLCGKFGLYPKQI  190 (243)
T ss_dssp             CEECTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTTCG-GGCS-EEECTTTSSSCTTSSHHHHHHHHHHTCCGGGE
T ss_pred             CccCCCHHHHHHHHHHCCCEEEEEECCcHHHHHHHHHHcCch-heEE-EEEecccCCCCCcCHHHHHHHHHHhCcChhhE
Confidence            5788999999999974 5999999999999999999998765 3674 56766655432      122345567788999


Q ss_pred             EEEeCCccccc
Q 044162          226 VIVDDTESVWG  236 (369)
Q Consensus       226 vIvDD~~~~w~  236 (369)
                      ++|+|+..-..
T Consensus       191 ~~vGD~~~Di~  201 (243)
T 2hsz_A          191 LFVGDSQNDIF  201 (243)
T ss_dssp             EEEESSHHHHH
T ss_pred             EEEcCCHHHHH
Confidence            99999985443

>1zrn_A L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseudomonas SP} SCOP: c.108.1.1 PDB: 1zrm_A 1jud_A 1qh9_A

Probab=95.67  E-value=0.017  Score=50.79  Aligned_cols=79  Identities=11%  Similarity=0.068  Sum_probs=61.6

Q ss_pred             EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCcE
Q 044162          153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENSI  225 (369)
Q Consensus       153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~v  225 (369)
                      +.+.||+.++|+.+. ..+.++|.|++.+.++..+++.++.. .+|. .+++.++....      +.+-++.++.+.+.+
T Consensus        94 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~l~-~~f~-~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~  171 (232)
T 1zrn_A           94 LAPFSEVPDSLRELKRRGLKLAILSNGSPQSIDAVVSHAGLR-DGFD-HLLSVDPVQVYKPDNRVYELAEQALGLDRSAI  171 (232)
T ss_dssp             CEECTTHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCG-GGCS-EEEESGGGTCCTTSHHHHHHHHHHHTSCGGGE
T ss_pred             CCCCccHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhcChH-hhhh-eEEEecccCCCCCCHHHHHHHHHHcCCCcccE
Confidence            567899999999997 46999999999999999999998876 3674 46666654421      223345677788999


Q ss_pred             EEEeCCcc
Q 044162          226 VIVDDTES  233 (369)
Q Consensus       226 vIvDD~~~  233 (369)
                      ++|+|+..
T Consensus       172 ~~iGD~~~  179 (232)
T 1zrn_A          172 LFVASNAW  179 (232)
T ss_dssp             EEEESCHH
T ss_pred             EEEeCCHH
Confidence            99999984

>2hdo_A Phosphoglycolate phosphatase; NP_784602.1, structur genomics, PSI-2, protein structure initiative, joint center structural genomics; HET: MSE; 1.50A {Lactobacillus plantarum} SCOP: c.108.1.6

Probab=95.66  E-value=0.0087  Score=51.82  Aligned_cols=91  Identities=13%  Similarity=0.110  Sum_probs=65.9

Q ss_pred             EEeCccHHHHHHHHhcCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCcEE
Q 044162          153 VKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENSIV  226 (369)
Q Consensus       153 vklRPgl~eFL~~ls~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~vv  226 (369)
                      +.+.||+.++|+.+.+.+.++|.|++.+.++..+++.++.. .+|. .+++.++....      +.+-++.++.+.+.++
T Consensus        82 ~~~~~~~~~~l~~l~~~~~~~i~s~~~~~~~~~~l~~~~l~-~~f~-~~~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~i  159 (209)
T 2hdo_A           82 IELYPGITSLFEQLPSELRLGIVTSQRRNELESGMRSYPFM-MRMA-VTISADDTPKRKPDPLPLLTALEKVNVAPQNAL  159 (209)
T ss_dssp             CEECTTHHHHHHHSCTTSEEEEECSSCHHHHHHHHTTSGGG-GGEE-EEECGGGSSCCTTSSHHHHHHHHHTTCCGGGEE
T ss_pred             CCcCCCHHHHHHHHHhcCcEEEEeCCCHHHHHHHHHHcChH-hhcc-EEEecCcCCCCCCCcHHHHHHHHHcCCCcccEE
Confidence            57899999999999755999999999999999999887655 3674 46666654321      2333456777889999


Q ss_pred             EEeCCccccccCCCceEEe
Q 044162          227 IVDDTESVWGGRVENLITV  245 (369)
Q Consensus       227 IvDD~~~~w~~~~~N~I~I  245 (369)
                      .|+|+..-.......++.+
T Consensus       160 ~vGD~~~Di~~a~~aG~~~  178 (209)
T 2hdo_A          160 FIGDSVSDEQTAQAANVDF  178 (209)
T ss_dssp             EEESSHHHHHHHHHHTCEE
T ss_pred             EECCChhhHHHHHHcCCeE
Confidence            9999975553323334433

>4eek_A Beta-phosphoglucomutase-related protein; hydrolase, magnesium binding site, enzyme function initiativ; 1.60A {Deinococcus radiodurans} PDB: 4eel_A* 4een_A

Probab=95.53  E-value=0.011  Score=53.02  Aligned_cols=91  Identities=8%  Similarity=-0.071  Sum_probs=68.6

Q ss_pred             EEeCccHHHHHHHHhc-CccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeecccc-Cc------ccccccccCCCCCc
Q 044162          153 VKLRPFVRSFLEEASR-LFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFK-QK------ERKYLDLVLGQENS  224 (369)
Q Consensus       153 vklRPgl~eFL~~ls~-~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~-~~------~~KdL~~l~~~~~~  224 (369)
                      ....||+.++|+.+.+ .+.++|+|++...++..+++.++.. .+|...+++.++.. ..      +.+-++.++.+.+.
T Consensus       109 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~-~~f~~~i~~~~~~~~~~Kp~~~~~~~~~~~lgi~~~~  187 (259)
T 4eek_A          109 VTAIEGAAETLRALRAAGVPFAIGSNSERGRLHLKLRVAGLT-ELAGEHIYDPSWVGGRGKPHPDLYTFAAQQLGILPER  187 (259)
T ss_dssp             CEECTTHHHHHHHHHHHTCCEEEECSSCHHHHHHHHHHTTCH-HHHCSCEECGGGGTTCCTTSSHHHHHHHHHTTCCGGG
T ss_pred             CCcCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHhcChH-hhccceEEeHhhcCcCCCCChHHHHHHHHHcCCCHHH
Confidence            6789999999999985 7999999999999999999998766 36765477666654 32      23345567788899


Q ss_pred             EEEEeCCccccccCCCceEE
Q 044162          225 IVIVDDTESVWGGRVENLIT  244 (369)
Q Consensus       225 vvIvDD~~~~w~~~~~N~I~  244 (369)
                      ++.|+|+..-.......|+.
T Consensus       188 ~i~iGD~~~Di~~a~~aG~~  207 (259)
T 4eek_A          188 CVVIEDSVTGGAAGLAAGAT  207 (259)
T ss_dssp             EEEEESSHHHHHHHHHHTCE
T ss_pred             EEEEcCCHHHHHHHHHCCCE
Confidence            99999998555433334444

>3mc1_A Predicted phosphatase, HAD family; PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.93A {Clostridium acetobutylicum} SCOP: c.108.1.0

Probab=95.50  E-value=0.012  Score=51.33  Aligned_cols=89  Identities=15%  Similarity=0.164  Sum_probs=66.9

Q ss_pred             EEeCccHHHHHHHHhc-CccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCcE
Q 044162          153 VKLRPFVRSFLEEASR-LFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENSI  225 (369)
Q Consensus       153 vklRPgl~eFL~~ls~-~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~v  225 (369)
                      +.+.||+.++|+.+.+ .+.++|.|++.+.++..+++.++-. .+|. .+++.++....      +.+-++.++.+.+.+
T Consensus        85 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~l~-~~f~-~~~~~~~~~~~kp~~~~~~~~~~~lgi~~~~~  162 (226)
T 3mc1_A           85 NKVYDGIEALLSSLKDYGFHLVVATSKPTVFSKQILEHFKLA-FYFD-AIVGSSLDGKLSTKEDVIRYAMESLNIKSDDA  162 (226)
T ss_dssp             CCBCTTHHHHHHHHHHHTCEEEEEEEEEHHHHHHHHHHTTCG-GGCS-EEEEECTTSSSCSHHHHHHHHHHHHTCCGGGE
T ss_pred             CccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhCCH-hhee-eeeccCCCCCCCCCHHHHHHHHHHhCcCcccE
Confidence            5688999999999985 5999999999999999999998876 3674 46666655431      233455677788899


Q ss_pred             EEEeCCccccccCCCceE
Q 044162          226 VIVDDTESVWGGRVENLI  243 (369)
Q Consensus       226 vIvDD~~~~w~~~~~N~I  243 (369)
                      +.|+|+..-.......|+
T Consensus       163 i~iGD~~~Di~~a~~aG~  180 (226)
T 3mc1_A          163 IMIGDREYDVIGALKNNL  180 (226)
T ss_dssp             EEEESSHHHHHHHHTTTC
T ss_pred             EEECCCHHHHHHHHHCCC
Confidence            999999855543333444

>2no4_A (S)-2-haloacid dehalogenase IVA; HAD superfamily, rossman fold, hydrol; 1.93A {Burkholderia cepacia} PDB: 2no5_A*

Probab=95.46  E-value=0.018  Score=50.96  Aligned_cols=81  Identities=17%  Similarity=0.164  Sum_probs=62.4

Q ss_pred             EEeCccHHHHHHHHhc-CccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCcE
Q 044162          153 VKLRPFVRSFLEEASR-LFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENSI  225 (369)
Q Consensus       153 vklRPgl~eFL~~ls~-~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~v  225 (369)
                      +.+.||+.++|+.+.+ .+.++|.|++.+.++..+++.++.. .+|. .+++.++....      +.+-++.++.+.+.+
T Consensus       104 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~-~~f~-~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~  181 (240)
T 2no4_A          104 LSAYPDAAETLEKLKSAGYIVAILSNGNDEMLQAALKASKLD-RVLD-SCLSADDLKIYKPDPRIYQFACDRLGVNPNEV  181 (240)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCG-GGCS-EEEEGGGTTCCTTSHHHHHHHHHHHTCCGGGE
T ss_pred             CCCCCCHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHhcCcH-HHcC-EEEEccccCCCCCCHHHHHHHHHHcCCCcccE
Confidence            4678999999999975 6999999999999999999998876 3674 46666654321      223355677888999


Q ss_pred             EEEeCCcccc
Q 044162          226 VIVDDTESVW  235 (369)
Q Consensus       226 vIvDD~~~~w  235 (369)
                      +.|+|+..-.
T Consensus       182 ~~iGD~~~Di  191 (240)
T 2no4_A          182 CFVSSNAWDL  191 (240)
T ss_dssp             EEEESCHHHH
T ss_pred             EEEeCCHHHH
Confidence            9999997433

>4ex6_A ALNB; modified rossman fold, phosphatase, magnesium binding, hydro; 1.25A {Streptomyces SP} PDB: 4ex7_A

Probab=95.46  E-value=0.017  Score=50.83  Aligned_cols=89  Identities=15%  Similarity=0.008  Sum_probs=66.6

Q ss_pred             EEeCccHHHHHHHHhc-CccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCcE
Q 044162          153 VKLRPFVRSFLEEASR-LFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENSI  225 (369)
Q Consensus       153 vklRPgl~eFL~~ls~-~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~v  225 (369)
                      ..+.||+.++|+.+.+ .+.++|.|++.+.+++.+++.++-. .+|. .+++.++....      +.+-++.++.+.+.+
T Consensus       103 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~-~~f~-~~~~~~~~~~~kp~~~~~~~~~~~lg~~~~~~  180 (237)
T 4ex6_A          103 RLLYPGVLEGLDRLSAAGFRLAMATSKVEKAARAIAELTGLD-TRLT-VIAGDDSVERGKPHPDMALHVARGLGIPPERC  180 (237)
T ss_dssp             GGBCTTHHHHHHHHHHTTEEEEEECSSCHHHHHHHHHHHTGG-GTCS-EEECTTTSSSCTTSSHHHHHHHHHHTCCGGGE
T ss_pred             CccCCCHHHHHHHHHhCCCcEEEEcCCChHHHHHHHHHcCch-hhee-eEEeCCCCCCCCCCHHHHHHHHHHcCCCHHHe
Confidence            4578999999999985 5999999999999999999998866 3674 46666654421      233455678889999


Q ss_pred             EEEeCCccccccCCCceE
Q 044162          226 VIVDDTESVWGGRVENLI  243 (369)
Q Consensus       226 vIvDD~~~~w~~~~~N~I  243 (369)
                      +.|+|+..-.......|+
T Consensus       181 i~vGD~~~Di~~a~~aG~  198 (237)
T 4ex6_A          181 VVIGDGVPDAEMGRAAGM  198 (237)
T ss_dssp             EEEESSHHHHHHHHHTTC
T ss_pred             EEEcCCHHHHHHHHHCCC
Confidence            999999854443333444

>2zg6_A Putative uncharacterized protein ST2620, probable 2-haloalkanoic; probable 2-haloalkanoic acid dehalogenase, hydrolase, structural genomics; 2.40A {Sulfolobus tokodaii}

Probab=95.45  E-value=0.023  Score=49.99  Aligned_cols=89  Identities=17%  Similarity=0.095  Sum_probs=59.1

Q ss_pred             EEEeCccHHHHHHHHhc-CccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCc
Q 044162          152 LVKLRPFVRSFLEEASR-LFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENS  224 (369)
Q Consensus       152 ~vklRPgl~eFL~~ls~-~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~  224 (369)
                      .+.+.||+.++|+.+.+ .+.++|.|++.+ ++..+++.++-. .+|. .+++.++....      +.+-++.++.+.  
T Consensus        93 ~~~~~~~~~~~l~~l~~~g~~~~i~Tn~~~-~~~~~l~~~gl~-~~f~-~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~--  167 (220)
T 2zg6_A           93 EAFLYDDTLEFLEGLKSNGYKLALVSNASP-RVKTLLEKFDLK-KYFD-ALALSYEIKAVKPNPKIFGFALAKVGYPA--  167 (220)
T ss_dssp             EEEECTTHHHHHHHHHTTTCEEEECCSCHH-HHHHHHHHHTCG-GGCS-EEC-----------CCHHHHHHHHHCSSE--
T ss_pred             CceECcCHHHHHHHHHHCCCEEEEEeCCcH-HHHHHHHhcCcH-hHee-EEEeccccCCCCCCHHHHHHHHHHcCCCe--
Confidence            57889999999999986 599999999987 688899988876 3674 46555554321      223344555444  


Q ss_pred             EEEEeCCcc-ccccCCCceEEeC
Q 044162          225 IVIVDDTES-VWGGRVENLITVG  246 (369)
Q Consensus       225 vvIvDD~~~-~w~~~~~N~I~I~  246 (369)
                       ++|+|++. -.......|+.+-
T Consensus       168 -~~vgD~~~~Di~~a~~aG~~~i  189 (220)
T 2zg6_A          168 -VHVGDIYELDYIGAKRSYVDPI  189 (220)
T ss_dssp             -EEEESSCCCCCCCSSSCSEEEE
T ss_pred             -EEEcCCchHhHHHHHHCCCeEE
Confidence             99999986 5544455666543

>1yns_A E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo sapiens} SCOP: c.108.1.22 PDB: 1zs9_A

Probab=95.36  E-value=0.017  Score=53.10  Aligned_cols=80  Identities=13%  Similarity=0.038  Sum_probs=61.8

Q ss_pred             EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhC---CCCCcccceEEeeccccCc-----ccccccccCCCCC
Q 044162          153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLD---PDCKYFNSRIITREDFKQK-----ERKYLDLVLGQEN  223 (369)
Q Consensus       153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lD---p~~~~f~~Ri~srd~~~~~-----~~KdL~~l~~~~~  223 (369)
                      +.+.||+.++|+.+. +.+.++|.|++.+.++..+++.++   -. .+|. .+++. +....     +.+-++.++.+++
T Consensus       129 ~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~~~~l~-~~fd-~i~~~-~~~~KP~p~~~~~~~~~lg~~p~  205 (261)
T 1yns_A          129 AEFFADVVPAVRKWREAGMKVYIYSSGSVEAQKLLFGHSTEGDIL-ELVD-GHFDT-KIGHKVESESYRKIADSIGCSTN  205 (261)
T ss_dssp             BCCCTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHTBTTBCCG-GGCS-EEECG-GGCCTTCHHHHHHHHHHHTSCGG
T ss_pred             cccCcCHHHHHHHHHhCCCeEEEEeCCCHHHHHHHHHhhcccChH-hhcc-EEEec-CCCCCCCHHHHHHHHHHhCcCcc
Confidence            678999999999996 679999999999999999998664   33 4784 46765 44321     3444567788889


Q ss_pred             cEEEEeCCcccc
Q 044162          224 SIVIVDDTESVW  235 (369)
Q Consensus       224 ~vvIvDD~~~~w  235 (369)
                      .+|+|+|+..-.
T Consensus       206 ~~l~VgDs~~di  217 (261)
T 1yns_A          206 NILFLTDVTREA  217 (261)
T ss_dssp             GEEEEESCHHHH
T ss_pred             cEEEEcCCHHHH
Confidence            999999997444

>1qq5_A Protein (L-2-haloacid dehalogenase); hydrolase; 1.52A {Xanthobacter autotrophicus} SCOP: c.108.1.1 PDB: 1qq6_A* 1qq7_A* 1aq6_A

Probab=95.32  E-value=0.021  Score=51.31  Aligned_cols=80  Identities=10%  Similarity=0.043  Sum_probs=62.8

Q ss_pred             EEeCccHHHHHHHHhcCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCcEE
Q 044162          153 VKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENSIV  226 (369)
Q Consensus       153 vklRPgl~eFL~~ls~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~vv  226 (369)
                      +.+.||+.++|+.+. .+.++|.|++.+.++..+++.++-. .+|. .+++.++....      +.+-++.++.+.+.++
T Consensus        92 ~~~~~~~~~~l~~l~-g~~~~i~t~~~~~~~~~~l~~~gl~-~~f~-~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~  168 (253)
T 1qq5_A           92 LTPYPDAAQCLAELA-PLKRAILSNGAPDMLQALVANAGLT-DSFD-AVISVDAKRVFKPHPDSYALVEEVLGVTPAEVL  168 (253)
T ss_dssp             CCBCTTHHHHHHHHT-TSEEEEEESSCHHHHHHHHHHTTCG-GGCS-EEEEGGGGTCCTTSHHHHHHHHHHHCCCGGGEE
T ss_pred             CCCCccHHHHHHHHc-CCCEEEEeCcCHHHHHHHHHHCCch-hhcc-EEEEccccCCCCCCHHHHHHHHHHcCCCHHHEE
Confidence            467899999999999 9999999999999999999998765 4674 46666665421      2334556778889999


Q ss_pred             EEeCCcccc
Q 044162          227 IVDDTESVW  235 (369)
Q Consensus       227 IvDD~~~~w  235 (369)
                      +|+|+..-.
T Consensus       169 ~vGD~~~Di  177 (253)
T 1qq5_A          169 FVSSNGFDV  177 (253)
T ss_dssp             EEESCHHHH
T ss_pred             EEeCChhhH
Confidence            999997433

>2i6x_A Hydrolase, haloacid dehalogenase-like family; HAD superfamily, struct genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Porphyromonas gingivalis}

Probab=95.30  E-value=0.01  Score=51.41  Aligned_cols=95  Identities=7%  Similarity=0.005  Sum_probs=68.2

Q ss_pred             EEEeCccHHHHHHHHhcCccEEEecCCcHHHHHHHHHH------hCCCCCcccceEEeeccccCc------ccccccccC
Q 044162          152 LVKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKL------LDPDCKYFNSRIITREDFKQK------ERKYLDLVL  219 (369)
Q Consensus       152 ~vklRPgl~eFL~~ls~~yEi~I~T~g~~~YA~~i~~~------lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~  219 (369)
                      .+...||+.++|+.+.+.+.++|.|++.+.++..+++.      ++.. .+|. .+++.++....      +.+-++.++
T Consensus        87 ~~~~~~~~~~~l~~l~~g~~~~i~t~~~~~~~~~~~~~l~~~~~~~l~-~~f~-~~~~~~~~~~~Kp~~~~~~~~~~~~~  164 (211)
T 2i6x_A           87 LEEISAEKFDYIDSLRPDYRLFLLSNTNPYVLDLAMSPRFLPSGRTLD-SFFD-KVYASCQMGKYKPNEDIFLEMIADSG  164 (211)
T ss_dssp             EEEECHHHHHHHHHHTTTSEEEEEECCCHHHHHHHTSTTSSTTCCCGG-GGSS-EEEEHHHHTCCTTSHHHHHHHHHHHC
T ss_pred             hcccChHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHhhhccccccCHH-HHcC-eEEeecccCCCCCCHHHHHHHHHHhC
Confidence            56789999999999988899999999999999988876      4443 3664 46655544321      233355677


Q ss_pred             CCCCcEEEEeCCccccccCCCceEEeCcc
Q 044162          220 GQENSIVIVDDTESVWGGRVENLITVGSY  248 (369)
Q Consensus       220 ~~~~~vvIvDD~~~~w~~~~~N~I~I~~y  248 (369)
                      .+.+.++.|+|++.-.......|+.+--+
T Consensus       165 ~~~~~~~~igD~~~Di~~a~~aG~~~~~~  193 (211)
T 2i6x_A          165 MKPEETLFIDDGPANVATAERLGFHTYCP  193 (211)
T ss_dssp             CCGGGEEEECSCHHHHHHHHHTTCEEECC
T ss_pred             CChHHeEEeCCCHHHHHHHHHcCCEEEEE
Confidence            78899999999986554434456655433

>4dcc_A Putative haloacid dehalogenase-like hydrolase; magnesium binding site, enzyme function initiativ; 1.65A {Bacteroides thetaiotaomicron} PDB: 4dfd_A 4f71_A 4f72_A

Probab=95.28  E-value=0.013  Score=51.79  Aligned_cols=94  Identities=12%  Similarity=0.010  Sum_probs=67.5

Q ss_pred             EeCccHHHHHHHHhcCccEEEecCCcHHHHHHHHHHh---CCCC--CcccceEEeeccccCc------ccccccccCCCC
Q 044162          154 KLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLL---DPDC--KYFNSRIITREDFKQK------ERKYLDLVLGQE  222 (369)
Q Consensus       154 klRPgl~eFL~~ls~~yEi~I~T~g~~~YA~~i~~~l---Dp~~--~~f~~Ri~srd~~~~~------~~KdL~~l~~~~  222 (369)
                      .+.||+.++|+.+.+.|.++|.|++.+.++..+++.|   ...+  .+|. .+++.++....      +.+-++.++.+.
T Consensus       112 ~~~~~~~~~l~~l~~~~~~~i~Sn~~~~~~~~~~~~l~~~~~~~l~~~fd-~i~~~~~~~~~KP~~~~~~~~~~~~g~~~  190 (229)
T 4dcc_A          112 DIPTYKLDLLLKLREKYVVYLLSNTNDIHWKWVCKNAFPYRTFKVEDYFE-KTYLSYEMKMAKPEPEIFKAVTEDAGIDP  190 (229)
T ss_dssp             CCCHHHHHHHHHHTTTSEEEEEECCCHHHHHHHHHHTSCBTTBCHHHHCS-EEEEHHHHTCCTTCHHHHHHHHHHHTCCG
T ss_pred             hccHHHHHHHHHHHhcCcEEEEECCChHHHHHHHhhhhhhccCCHHHhCC-EEEeecccCCCCCCHHHHHHHHHHcCCCH
Confidence            4679999999999866999999999999999888776   4433  2564 46666554431      334456678889


Q ss_pred             CcEEEEeCCccccccCCCceEEeCcc
Q 044162          223 NSIVIVDDTESVWGGRVENLITVGSY  248 (369)
Q Consensus       223 ~~vvIvDD~~~~w~~~~~N~I~I~~y  248 (369)
                      +.+++|+|++.-.......|+.+--+
T Consensus       191 ~~~~~vGD~~~Di~~a~~aG~~~i~v  216 (229)
T 4dcc_A          191 KETFFIDDSEINCKVAQELGISTYTP  216 (229)
T ss_dssp             GGEEEECSCHHHHHHHHHTTCEEECC
T ss_pred             HHeEEECCCHHHHHHHHHcCCEEEEE
Confidence            99999999985444334456554433

>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B

Probab=95.22  E-value=0.014  Score=54.28  Aligned_cols=57  Identities=7%  Similarity=0.070  Sum_probs=46.4

Q ss_pred             HhhhcCceEEecccCCC-----------------------------CChhHHHHHHhcCCEEEeccCCC------ceEEE
Q 044162          312 SRILMGCTILFGDDDFE-----------------------------ELPLTWSRAEEMGAICTLVTDAS------VTHVV  356 (369)
Q Consensus       312 ~~VL~g~~ivFSg~~p~-----------------------------~~p~lw~la~~~GA~v~~~i~~~------vTHvV  356 (369)
                      +.+|+|+.+++|+..+.                             ....+.++.+++|++++.++++.      +||||
T Consensus        13 ~~iF~g~~F~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~I~~~GG~v~~~~~~~~~~~~~~t~LI   92 (259)
T 1kzy_C           13 KTLFLGYAFLLTMATTSDKLASRSKLPDGPTGSSEEEEEFLEIPPFNKQYTESQLRAGAGYILEDFNEAQCNTAYQCLLI   92 (259)
T ss_dssp             TTTTTTEEEEECCCC---------------------------CCCCCHHHHHHHHHTTTCEECSSCCTTTTTTTCEEEEE
T ss_pred             CcCcCCcEEEEEcccccccccccccccccccccccccccccccCcccHHHHHHHHHHCCCEEecCccccccccCCCeEEE
Confidence            67999999999998753                             11278899999999999999865      79999


Q ss_pred             ecC-CCccccccc
Q 044162          357 SSN-TQSETFEWA  368 (369)
Q Consensus       357 a~~-~gT~K~~~a  368 (369)
                      |.+ ..|.|..+|
T Consensus        93 a~~~~rt~K~l~a  105 (259)
T 1kzy_C           93 ADQHCRTRKYFLC  105 (259)
T ss_dssp             ESSCCCSHHHHHH
T ss_pred             cCCCCCcHHHHHH
Confidence            976 778887765

>3u26_A PF00702 domain protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 1.59A {Pyrococcus horikoshii} SCOP: c.108.1.1 PDB: 1x42_A

Probab=95.19  E-value=0.019  Score=50.18  Aligned_cols=78  Identities=21%  Similarity=0.139  Sum_probs=61.7

Q ss_pred             EEeCccHHHHHHHHhcCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCcEE
Q 044162          153 VKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENSIV  226 (369)
Q Consensus       153 vklRPgl~eFL~~ls~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~vv  226 (369)
                      ....|++.++|+.+.+.+.++|+|++...++..+++.++.. .+|. .+++.++....      +.+-++.++.+.+.++
T Consensus        99 ~~~~~~~~~~l~~l~~~~~~~i~t~~~~~~~~~~l~~~~~~-~~f~-~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~  176 (234)
T 3u26_A           99 GELYPEVVEVLKSLKGKYHVGMITDSDTEQAMAFLDALGIK-DLFD-SITTSEEAGFFKPHPRIFELALKKAGVKGEEAV  176 (234)
T ss_dssp             CCBCTTHHHHHHHHTTTSEEEEEESSCHHHHHHHHHHTTCG-GGCS-EEEEHHHHTBCTTSHHHHHHHHHHHTCCGGGEE
T ss_pred             CCcCcCHHHHHHHHHhCCcEEEEECCCHHHHHHHHHHcCcH-HHcc-eeEeccccCCCCcCHHHHHHHHHHcCCCchhEE
Confidence            56789999999999866999999999999999999998876 3674 46666554321      2334456778899999


Q ss_pred             EEeCCc
Q 044162          227 IVDDTE  232 (369)
Q Consensus       227 IvDD~~  232 (369)
                      .|+|+.
T Consensus       177 ~vGD~~  182 (234)
T 3u26_A          177 YVGDNP  182 (234)
T ss_dssp             EEESCT
T ss_pred             EEcCCc
Confidence            999997

>3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein interactions, XRCC1 domain, DNA binding protein; HET: DNA MSE; 1.65A {Homo sapiens} SCOP: c.15.1.2 PDB: 3pc8_C* 1imo_A* 1in1_A* 3qvg_A*

Probab=95.11  E-value=0.012  Score=46.14  Aligned_cols=46  Identities=17%  Similarity=0.094  Sum_probs=38.0

Q ss_pred             hhhcCceEEecccCCCCChhHHHHHHhcCCEEEeccCC-CceEEEecC
Q 044162          313 RILMGCTILFGDDDFEELPLTWSRAEEMGAICTLVTDA-SVTHVVSSN  359 (369)
Q Consensus       313 ~VL~g~~ivFSg~~p~~~p~lw~la~~~GA~v~~~i~~-~vTHvVa~~  359 (369)
                      .+|.||++.+++-+|.. ..+.+...+||++++.+.+. ++||+|+.+
T Consensus        15 diFsg~~~~l~~~v~~~-~~l~RyiiAfgG~v~~~~~~~~vTHvI~~~   61 (88)
T 3pc7_A           15 DIFTGVRLYLPPSTPDF-SRLRRYFVAFDGDLVQEFDMTSATHVLGSR   61 (88)
T ss_dssp             CCSTTCEECCCTTSTTH-HHHHHHHHHTTCEECCGGGGGGCSEEESCC
T ss_pred             hhhcCeEEEccCCcCch-hhheeeeeecCCEEecccCCCcCeEEecCC
Confidence            47889999998877642 37778899999999998885 899999865

>3ddh_A Putative haloacid dehalogenase-like family hydrol; hydrolase, HAD superfamily, ST genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides thetaiotaomicron}

Probab=95.09  E-value=0.019  Score=49.77  Aligned_cols=78  Identities=17%  Similarity=0.238  Sum_probs=60.1

Q ss_pred             EEeCccHHHHHHHHhc--CccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccc-cCcccccccccCCCCCcEEEEe
Q 044162          153 VKLRPFVRSFLEEASR--LFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDF-KQKERKYLDLVLGQENSIVIVD  229 (369)
Q Consensus       153 vklRPgl~eFL~~ls~--~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~-~~~~~KdL~~l~~~~~~vvIvD  229 (369)
                      +...||+.++|+.+.+  .+.++|.|++.+.++..+++.+.... +|.. +++...- ...+.+-++.++.+.+.++.|+
T Consensus       104 ~~~~~~~~~~l~~l~~~g~~~~~i~t~~~~~~~~~~l~~~~~~~-~f~~-~~~~~kpk~~~~~~~~~~lgi~~~~~i~iG  181 (234)
T 3ddh_A          104 IELLPGVKETLKTLKETGKYKLVVATKGDLLDQENKLERSGLSP-YFDH-IEVMSDKTEKEYLRLLSILQIAPSELLMVG  181 (234)
T ss_dssp             CCBCTTHHHHHHHHHHHCCCEEEEEEESCHHHHHHHHHHHTCGG-GCSE-EEEESCCSHHHHHHHHHHHTCCGGGEEEEE
T ss_pred             CCcCccHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhCcHh-hhhe-eeecCCCCHHHHHHHHHHhCCCcceEEEEC
Confidence            5678999999999986  59999999999999999999988763 6754 4443221 1123445566788999999999


Q ss_pred             CCc
Q 044162          230 DTE  232 (369)
Q Consensus       230 D~~  232 (369)
                      |+.
T Consensus       182 D~~  184 (234)
T 3ddh_A          182 NSF  184 (234)
T ss_dssp             SCC
T ss_pred             CCc
Confidence            995

>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}

Probab=95.04  E-value=0.004  Score=65.65  Aligned_cols=56  Identities=14%  Similarity=0.114  Sum_probs=0.0

Q ss_pred             hhcCceEEecccCCC-CChhHHHHHHhcCCEEEeccCCCceEEEecCCCcccccccC
Q 044162          314 ILMGCTILFGDDDFE-ELPLTWSRAEEMGAICTLVTDASVTHVVSSNTQSETFEWAE  369 (369)
Q Consensus       314 VL~g~~ivFSg~~p~-~~p~lw~la~~~GA~v~~~i~~~vTHvVa~~~gT~K~~~a~  369 (369)
                      .|.|.++||+|.++. .+..+..+++++||+|+..++.+|++||+......|.+.|+
T Consensus       597 ~l~G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~~sVSkkTd~lV~G~~~gsKl~KA~  653 (671)
T 2owo_A          597 PFAGKTVVLTGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQ  653 (671)
T ss_dssp             ---------------------------------------------------------
T ss_pred             cccCcEEEEcCCCCCCCHHHHHHHHHHcCCEEeCcccCceeEEEECCCCChHHHHHH
Confidence            489999999999976 45688899999999999999999999999987778888774

>2hcf_A Hydrolase, haloacid dehalogenase-like family; NP_662590.1, ST genomics, PSI-2, protein structure initiative; 1.80A {Chlorobaculum tepidum} SCOP: c.108.1.6

Probab=94.90  E-value=0.035  Score=48.38  Aligned_cols=90  Identities=21%  Similarity=0.094  Sum_probs=64.8

Q ss_pred             EEEeCccHHHHHHHHhcC--ccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc-------ccccccccC--C
Q 044162          152 LVKLRPFVRSFLEEASRL--FEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK-------ERKYLDLVL--G  220 (369)
Q Consensus       152 ~vklRPgl~eFL~~ls~~--yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~-------~~KdL~~l~--~  220 (369)
                      .+...||+.++|+.+.+.  +.+.|.|++.+.++..+++.++... +|.. +++.++....       +.+-++.++  .
T Consensus        91 ~~~~~~~~~~~l~~l~~~~g~~~~i~t~~~~~~~~~~l~~~~l~~-~f~~-~~~~~~~~~~~k~~~~~~~~~~~~lg~~~  168 (234)
T 2hcf_A           91 DITLLEGVRELLDALSSRSDVLLGLLTGNFEASGRHKLKLPGIDH-YFPF-GAFADDALDRNELPHIALERARRMTGANY  168 (234)
T ss_dssp             GEEECTTHHHHHHHHHTCTTEEEEEECSSCHHHHHHHHHTTTCST-TCSC-EECTTTCSSGGGHHHHHHHHHHHHHCCCC
T ss_pred             CCCcCCCHHHHHHHHHhCCCceEEEEcCCcHHHHHHHHHHCCchh-hcCc-ceecCCCcCccchHHHHHHHHHHHhCCCC
Confidence            367899999999999864  9999999999999999999988764 6754 4434443221       112234566  6


Q ss_pred             CCCcEEEEeCCccccccCCCceE
Q 044162          221 QENSIVIVDDTESVWGGRVENLI  243 (369)
Q Consensus       221 ~~~~vvIvDD~~~~w~~~~~N~I  243 (369)
                      +.+.++.|+|++.-.......|+
T Consensus       169 ~~~~~i~iGD~~~Di~~a~~aG~  191 (234)
T 2hcf_A          169 SPSQIVIIGDTEHDIRCARELDA  191 (234)
T ss_dssp             CGGGEEEEESSHHHHHHHHTTTC
T ss_pred             CcccEEEECCCHHHHHHHHHCCC
Confidence            88999999999855543334453

>2pke_A Haloacid delahogenase-like family hydrolase; NP_639141.1, ST genomics, joint center for structural genomics, JCSG; 1.81A {Xanthomonas campestris PV}

Probab=94.85  E-value=0.022  Score=50.90  Aligned_cols=81  Identities=15%  Similarity=0.094  Sum_probs=61.0

Q ss_pred             EEeCccHHHHHHHHhcCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeecc-ccCcccccccccCCCCCcEEEEeCC
Q 044162          153 VKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITRED-FKQKERKYLDLVLGQENSIVIVDDT  231 (369)
Q Consensus       153 vklRPgl~eFL~~ls~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~-~~~~~~KdL~~l~~~~~~vvIvDD~  231 (369)
                      +.+.||+.++|+.+...+.+.|.|++.+.++..+++.++.. .+|. .+++... ....+.+-++.++.+.+.++.|.|+
T Consensus       111 ~~~~~~~~~~l~~l~~~~~~~i~t~~~~~~~~~~l~~~~l~-~~f~-~i~~~~kp~~~~~~~~~~~l~~~~~~~i~iGD~  188 (251)
T 2pke_A          111 VEVIAGVREAVAAIAADYAVVLITKGDLFHQEQKIEQSGLS-DLFP-RIEVVSEKDPQTYARVLSEFDLPAERFVMIGNS  188 (251)
T ss_dssp             CCBCTTHHHHHHHHHTTSEEEEEEESCHHHHHHHHHHHSGG-GTCC-CEEEESCCSHHHHHHHHHHHTCCGGGEEEEESC
T ss_pred             CCcCccHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCcH-HhCc-eeeeeCCCCHHHHHHHHHHhCcCchhEEEECCC
Confidence            56789999999999978999999999999999999988766 3674 3554321 1112334455677888999999999


Q ss_pred             c-ccc
Q 044162          232 E-SVW  235 (369)
Q Consensus       232 ~-~~w  235 (369)
                      . .-.
T Consensus       189 ~~~Di  193 (251)
T 2pke_A          189 LRSDV  193 (251)
T ss_dssp             CCCCC
T ss_pred             chhhH
Confidence            8 433

>3cnh_A Hydrolase family protein; NP_295428.1, predicted hydrolase of haloacid dehalogenase-LI superfamily; HET: MSE PG4; 1.66A {Deinococcus radiodurans R1}

Probab=94.77  E-value=0.026  Score=48.40  Aligned_cols=91  Identities=13%  Similarity=0.119  Sum_probs=65.2

Q ss_pred             EEeCccHHHHHHHHhcCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCcEE
Q 044162          153 VKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENSIV  226 (369)
Q Consensus       153 vklRPgl~eFL~~ls~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~vv  226 (369)
                      ....||+.++|+.+.+...++|.|++.+.++..+++.++-. .+|. .+++.++....      +.+-++.++.+.+.++
T Consensus        85 ~~~~~~~~~~l~~l~~~g~~~i~s~~~~~~~~~~l~~~~~~-~~f~-~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~  162 (200)
T 3cnh_A           85 SQPRPEVLALARDLGQRYRMYSLNNEGRDLNEYRIRTFGLG-EFLL-AFFTSSALGVMKPNPAMYRLGLTLAQVRPEEAV  162 (200)
T ss_dssp             CCBCHHHHHHHHHHTTTSEEEEEECCCHHHHHHHHHHHTGG-GTCS-CEEEHHHHSCCTTCHHHHHHHHHHHTCCGGGEE
T ss_pred             CccCccHHHHHHHHHHcCCEEEEeCCcHHHHHHHHHhCCHH-Hhcc-eEEeecccCCCCCCHHHHHHHHHHcCCCHHHeE
Confidence            34789999999999754499999999999999999988765 3674 46655543321      2333556777889999


Q ss_pred             EEeCCccccccCCCceEEe
Q 044162          227 IVDDTESVWGGRVENLITV  245 (369)
Q Consensus       227 IvDD~~~~w~~~~~N~I~I  245 (369)
                      +|+|++.-.......++.+
T Consensus       163 ~vgD~~~Di~~a~~aG~~~  181 (200)
T 3cnh_A          163 MVDDRLQNVQAARAVGMHA  181 (200)
T ss_dssp             EEESCHHHHHHHHHTTCEE
T ss_pred             EeCCCHHHHHHHHHCCCEE
Confidence            9999986554333344443

>2b82_A APHA, class B acid phosphatase; DDDD acid phosphatase, metallo-ENZ hydrolase; HET: ADN; 1.25A {Escherichia coli} SCOP: c.108.1.12 PDB: 2b8j_A* 2hf7_A 1rmt_A* 1n9k_A 1rmq_A 1n8n_A* 1rmy_A* 2g1a_A* 3cz4_A 2heg_A* 1z5g_A 1z5u_A* 1z88_A 2aut_A

Probab=94.73  E-value=0.0058  Score=54.74  Aligned_cols=36  Identities=17%  Similarity=0.058  Sum_probs=29.9

Q ss_pred             eCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHh
Q 044162          155 LRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLL  190 (369)
Q Consensus       155 lRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~l  190 (369)
                      ..||+.++|+.+. +.+.++|.|++.+..+..+++.|
T Consensus        89 ~~~~~~e~l~~L~~~G~~l~ivTn~~~~~~~~~l~~l  125 (211)
T 2b82_A           89 PKEVARQLIDMHVRRGDAIFFVTGRSPTKTETVSKTL  125 (211)
T ss_dssp             ECHHHHHHHHHHHHHTCEEEEEECSCCCSSCCHHHHH
T ss_pred             CcHHHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHH
Confidence            5789999999997 57999999999877776666654

>1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.50A {Staphylococcus aureus subsp} SCOP: c.108.1.13

Probab=94.71  E-value=0.022  Score=56.09  Aligned_cols=91  Identities=18%  Similarity=0.062  Sum_probs=66.1

Q ss_pred             EEeCccHHHHHHHHhc-CccEEEecCCcHHHHHHHHHHhCCCCCccc-ceEEeecccc-------------C----cccc
Q 044162          153 VKLRPFVRSFLEEASR-LFEISVCTLGNREYATRAVKLLDPDCKYFN-SRIITREDFK-------------Q----KERK  213 (369)
Q Consensus       153 vklRPgl~eFL~~ls~-~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~-~Ri~srd~~~-------------~----~~~K  213 (369)
                      +.+.||+.++|+.+.+ .|.++|.|++.+.++..+++.++-. .+|. +.+++.++..             .    .+.+
T Consensus       214 ~~l~pGv~elL~~Lk~~Gi~laIvTn~~~~~~~~~L~~lgL~-~~Fd~~~Ivs~ddv~~~~~~~~~~kp~~KP~P~~~~~  292 (384)
T 1qyi_A          214 LRPVDEVKVLLNDLKGAGFELGIATGRPYTETVVPFENLGLL-PYFEADFIATASDVLEAENMYPQARPLGKPNPFSYIA  292 (384)
T ss_dssp             SSCHHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTCG-GGSCGGGEECHHHHHHHHHHSTTSCCCCTTSTHHHHH
T ss_pred             CCcCcCHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHcCCh-HhcCCCEEEecccccccccccccccCCCCCCHHHHHH
Confidence            5678999999999985 5999999999999999999999876 4785 2688766532             1    1233


Q ss_pred             cccccC--------------CCCCcEEEEeCCccccccCCCceEE
Q 044162          214 YLDLVL--------------GQENSIVIVDDTESVWGGRVENLIT  244 (369)
Q Consensus       214 dL~~l~--------------~~~~~vvIvDD~~~~w~~~~~N~I~  244 (369)
                      -+..++              .+++.+++|+|++.-.......|+.
T Consensus       293 a~~~lg~~~~~~~~~~~~~~v~p~e~l~VGDs~~Di~aAk~AG~~  337 (384)
T 1qyi_A          293 ALYGNNRDKYESYINKQDNIVNKDDVFIVGDSLADLLSAQKIGAT  337 (384)
T ss_dssp             HHHCCCGGGHHHHHHCCTTCSCTTTEEEEESSHHHHHHHHHHTCE
T ss_pred             HHHHcCCccccccccccccCCCCcCeEEEcCCHHHHHHHHHcCCE
Confidence            344555              5789999999998544332333443

>3iru_A Phoshonoacetaldehyde hydrolase like protein; phosphonoacetaldehyde hydrolase like P structural genomics, PSI-2, protein structure initiative; 2.30A {Oleispira antarctica} SCOP: c.108.1.0

Probab=94.51  E-value=0.037  Score=49.56  Aligned_cols=89  Identities=12%  Similarity=-0.059  Sum_probs=65.5

Q ss_pred             EEeCccHHHHHHHHhc-CccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCC-Cc
Q 044162          153 VKLRPFVRSFLEEASR-LFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQE-NS  224 (369)
Q Consensus       153 vklRPgl~eFL~~ls~-~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~-~~  224 (369)
                      +.+.||+.++|+.+.+ .+.++|.|++.+.++..+++.++..+..| +.+++.++....      +.+-++.++.+. +.
T Consensus       110 ~~~~~~~~~~l~~l~~~g~~~~i~tn~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~kp~~~~~~~~~~~lgi~~~~~  188 (277)
T 3iru_A          110 SQLIPGWKEVFDKLIAQGIKVGGNTGYGPGMMAPALIAAKEQGYTP-ASTVFATDVVRGRPFPDMALKVALELEVGHVNG  188 (277)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHTTCCC-SEEECGGGSSSCTTSSHHHHHHHHHHTCSCGGG
T ss_pred             CccCcCHHHHHHHHHHcCCeEEEEeCCchHHHHHHHHhcCcccCCC-ceEecHHhcCCCCCCHHHHHHHHHHcCCCCCcc
Confidence            5778999999999985 59999999999999999999877654225 557766664431      233455678888 99


Q ss_pred             EEEEeCCccccccCCCce
Q 044162          225 IVIVDDTESVWGGRVENL  242 (369)
Q Consensus       225 vvIvDD~~~~w~~~~~N~  242 (369)
                      +++|+|+..-.......|
T Consensus       189 ~i~vGD~~~Di~~a~~aG  206 (277)
T 3iru_A          189 CIKVDDTLPGIEEGLRAG  206 (277)
T ss_dssp             EEEEESSHHHHHHHHHTT
T ss_pred             EEEEcCCHHHHHHHHHCC
Confidence            999999985443323344

>3nuq_A Protein SSM1, putative nucleotide phosphatase; suppresses the 6-AU sensitivity of transcription elongation II; 1.70A {Saccharomyces cerevisiae} PDB: 3onn_A 3opx_A*

Probab=94.44  E-value=0.058  Score=49.16  Aligned_cols=82  Identities=15%  Similarity=0.080  Sum_probs=62.7

Q ss_pred             EEeCccHHHHHHHHhc-Cc--cEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccC----------cccccccccC
Q 044162          153 VKLRPFVRSFLEEASR-LF--EISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQ----------KERKYLDLVL  219 (369)
Q Consensus       153 vklRPgl~eFL~~ls~-~y--Ei~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~----------~~~KdL~~l~  219 (369)
                      +...||+.++|+.+.+ .+  .++|.|++.+.++..+++.++... +|.. +++.+....          .+.+-++.++
T Consensus       141 ~~~~p~~~~~L~~L~~~g~~~~l~i~Tn~~~~~~~~~l~~~gl~~-~fd~-v~~~~~~~~~~~~~Kp~~~~~~~~~~~lg  218 (282)
T 3nuq_A          141 LKPDIPLRNMLLRLRQSGKIDKLWLFTNAYKNHAIRCLRLLGIAD-LFDG-LTYCDYSRTDTLVCKPHVKAFEKAMKESG  218 (282)
T ss_dssp             CCCCHHHHHHHHHHHHSSSCSEEEEECSSCHHHHHHHHHHHTCTT-SCSE-EECCCCSSCSSCCCTTSHHHHHHHHHHHT
T ss_pred             cCcChhHHHHHHHHHhCCCCceEEEEECCChHHHHHHHHhCCccc-ccce-EEEeccCCCcccCCCcCHHHHHHHHHHcC
Confidence            5678999999999985 68  999999999999999999998774 6754 554444321          1233455677


Q ss_pred             CCC-CcEEEEeCCccccc
Q 044162          220 GQE-NSIVIVDDTESVWG  236 (369)
Q Consensus       220 ~~~-~~vvIvDD~~~~w~  236 (369)
                      .+. +.+++|+|+..-..
T Consensus       219 i~~~~~~i~vGD~~~Di~  236 (282)
T 3nuq_A          219 LARYENAYFIDDSGKNIE  236 (282)
T ss_dssp             CCCGGGEEEEESCHHHHH
T ss_pred             CCCcccEEEEcCCHHHHH
Confidence            887 99999999985443

>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell membrane, copper transport, hydrolase, ION transport, magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I

Probab=94.44  E-value=0.11  Score=48.01  Aligned_cols=84  Identities=12%  Similarity=0.112  Sum_probs=60.4

Q ss_pred             EEeCccHHHHHHHHhc-CccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCcccccccccCCCCCcEEEEeCC
Q 044162          153 VKLRPFVRSFLEEASR-LFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKYLDLVLGQENSIVIVDDT  231 (369)
Q Consensus       153 vklRPgl~eFL~~ls~-~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~~~KdL~~l~~~~~~vvIvDD~  231 (369)
                      ..++||+.++|+.+.+ .+.+.|.|++.+.++..+++.++.. .+|.. ++     .....+-++.++.. +.+++|.|+
T Consensus       162 ~~~~~g~~~~l~~L~~~g~~~~i~T~~~~~~~~~~l~~~gl~-~~f~~-i~-----~~~K~~~~~~l~~~-~~~~~vGDs  233 (287)
T 3a1c_A          162 DTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNLD-LVIAE-VL-----PHQKSEEVKKLQAK-EVVAFVGDG  233 (287)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTCS-EEECS-CC-----TTCHHHHHHHHTTT-CCEEEEECT
T ss_pred             cccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhCCc-eeeee-cC-----hHHHHHHHHHHhcC-CeEEEEECC
Confidence            4679999999999984 6999999999999999999999765 35532 22     11223445566667 999999998


Q ss_pred             ccccccCCCceEE
Q 044162          232 ESVWGGRVENLIT  244 (369)
Q Consensus       232 ~~~w~~~~~N~I~  244 (369)
                      ..-.......++.
T Consensus       234 ~~Di~~a~~ag~~  246 (287)
T 3a1c_A          234 INDAPALAQADLG  246 (287)
T ss_dssp             TTCHHHHHHSSEE
T ss_pred             HHHHHHHHHCCee
Confidence            7444332334454

>2fea_A 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; 2633731, structural genomics, joint center for structural GE JCSG; HET: MSE; 2.00A {Bacillus subtilis} SCOP: c.108.1.20

Probab=94.35  E-value=0.028  Score=50.20  Aligned_cols=91  Identities=12%  Similarity=0.051  Sum_probs=63.9

Q ss_pred             EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccC------------cc--c-----
Q 044162          153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQ------------KE--R-----  212 (369)
Q Consensus       153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~------------~~--~-----  212 (369)
                      +.++||+.++|+.+. ..|.++|.|++.+.++..+++-|  .+  | +.+++.+....            ..  .     
T Consensus        76 ~~~~pg~~~~l~~L~~~g~~~~ivS~~~~~~~~~~l~~l--~~--~-~~v~~~~~~~~~~~~~~~~~kp~p~~~~~~~~~  150 (236)
T 2fea_A           76 AKIREGFREFVAFINEHEIPFYVISGGMDFFVYPLLEGI--VE--K-DRIYCNHASFDNDYIHIDWPHSCKGTCSNQCGC  150 (236)
T ss_dssp             CCBCTTHHHHHHHHHHHTCCEEEEEEEEHHHHHHHHTTT--SC--G-GGEEEEEEECSSSBCEEECTTCCCTTCCSCCSS
T ss_pred             CCCCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHhcC--CC--C-CeEEeeeeEEcCCceEEecCCCCccccccccCC
Confidence            678999999999997 57999999999999999998822  22  2 44665543221            01  1     


Q ss_pred             ---ccccccCCCCCcEEEEeCCccccccCCCceEEeCcc
Q 044162          213 ---KYLDLVLGQENSIVIVDDTESVWGGRVENLITVGSY  248 (369)
Q Consensus       213 ---KdL~~l~~~~~~vvIvDD~~~~w~~~~~N~I~I~~y  248 (369)
                         +-++.++.+.+.+++|+|+..-.......++.+-.|
T Consensus       151 ~K~~~~~~~~~~~~~~~~vGDs~~Di~~a~~aG~~~~~~  189 (236)
T 2fea_A          151 CKPSVIHELSEPNQYIIMIGDSVTDVEAAKLSDLCFARD  189 (236)
T ss_dssp             CHHHHHHHHCCTTCEEEEEECCGGGHHHHHTCSEEEECH
T ss_pred             cHHHHHHHHhccCCeEEEEeCChHHHHHHHhCCeeeech
Confidence               445566778899999999975554334556665433

>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}

Probab=94.35  E-value=0.011  Score=54.89  Aligned_cols=50  Identities=4%  Similarity=-0.076  Sum_probs=25.5

Q ss_pred             HHhhhcCceEEecccCCCCC-hhHHHHHHhcCCEEEeccCCCceEEEecCC
Q 044162          311 RSRILMGCTILFGDDDFEEL-PLTWSRAEEMGAICTLVTDASVTHVVSSNT  360 (369)
Q Consensus       311 r~~VL~g~~ivFSg~~p~~~-p~lw~la~~~GA~v~~~i~~~vTHvVa~~~  360 (369)
                      ...+|+||++.|++..+... ..+..+.+++||+++.+++..|||||+...
T Consensus       157 ~~~lF~g~~~yl~~~~~~~~~~~l~~~i~~~GG~v~~~l~~~t~hVV~~~~  207 (264)
T 1z56_C          157 PLFLFSNRIAYVPRRKISTEDDIIEMKIKLFGGKITDQQSLCNLIIIPYTD  207 (264)
T ss_dssp             CCC--------------------CHHHHHHHTTSCCCCSSSCSEEECCCSS
T ss_pred             chhhhCCeEEEEecCCCchhHHHHHHHHHHcCCEEecccCCCEEEEEeCCC
Confidence            35689999999999765432 256677999999999999988888888543

>1nnl_A L-3-phosphoserine phosphatase; PSP, HPSP, phospho-aspartyl, hydrolase; 1.53A {Homo sapiens} SCOP: c.108.1.4 PDB: 1l8l_A* 1l8o_A

Probab=94.28  E-value=0.057  Score=47.31  Aligned_cols=89  Identities=12%  Similarity=0.136  Sum_probs=60.8

Q ss_pred             EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCC-CcccceE--------Eeecccc----C-c----ccc
Q 044162          153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDC-KYFNSRI--------ITREDFK----Q-K----ERK  213 (369)
Q Consensus       153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~-~~f~~Ri--------~srd~~~----~-~----~~K  213 (369)
                      +.++||+.++|+.+. +.+.++|.|++.+.++..+++.++... .+|...+        .+.+...    . .    +.+
T Consensus        85 ~~~~~g~~~~l~~L~~~g~~~~i~T~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~Kp~~~~~  164 (225)
T 1nnl_A           85 PHLTPGIRELVSRLQERNVQVFLISGGFRSIVEHVASKLNIPATNVFANRLKFYFNGEYAGFDETQPTAESGGKGKVIKL  164 (225)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHTTCCGGGEEEECEEECTTSCEEEECTTSGGGSTTHHHHHHHH
T ss_pred             CCCCccHHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHcCCCcccEEeeeEEEcCCCcEecCCCCCcccCCCchHHHHHH
Confidence            578999999999997 469999999999999999999988663 4665443        2222211    0 0    111


Q ss_pred             cccccCCCCCcEEEEeCCccccccCCCceE
Q 044162          214 YLDLVLGQENSIVIVDDTESVWGGRVENLI  243 (369)
Q Consensus       214 dL~~l~~~~~~vvIvDD~~~~w~~~~~N~I  243 (369)
                      -++.++.  +.+++|+|++.-.......++
T Consensus       165 ~~~~~~~--~~~~~vGDs~~Di~~a~~ag~  192 (225)
T 1nnl_A          165 LKEKFHF--KKIIMIGDGATDMEACPPADA  192 (225)
T ss_dssp             HHHHHCC--SCEEEEESSHHHHTTTTTSSE
T ss_pred             HHHHcCC--CcEEEEeCcHHhHHHHHhCCe
Confidence            1222333  689999999865554445566

>3smv_A S-(-)-azetidine-2-carboxylate hydrolase; haloacid dehalogenase superfamily, L-azetidine-2- carboxylate; HET: GOL; 1.38A {Pseudomonas}

Probab=94.27  E-value=0.037  Score=48.14  Aligned_cols=76  Identities=14%  Similarity=0.060  Sum_probs=59.3

Q ss_pred             EEeCccHHHHHHHHhcCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------cccc---ccccCCCCC
Q 044162          153 VKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKY---LDLVLGQEN  223 (369)
Q Consensus       153 vklRPgl~eFL~~ls~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~Kd---L~~l~~~~~  223 (369)
                      +...||+.++|+.+.+.+.++|.|++.+.++..+++.|+   .+|. .+++.++....      +.+-   ++.++.+++
T Consensus        98 ~~~~~~~~~~l~~l~~~~~~~i~tn~~~~~~~~~l~~l~---~~fd-~i~~~~~~~~~KP~~~~~~~~l~~~~~lgi~~~  173 (240)
T 3smv_A           98 WPAFPDTVEALQYLKKHYKLVILSNIDRNEFKLSNAKLG---VEFD-HIITAQDVGSYKPNPNNFTYMIDALAKAGIEKK  173 (240)
T ss_dssp             CCBCTTHHHHHHHHHHHSEEEEEESSCHHHHHHHHTTTC---SCCS-EEEEHHHHTSCTTSHHHHHHHHHHHHHTTCCGG
T ss_pred             CCCCCcHHHHHHHHHhCCeEEEEeCCChhHHHHHHHhcC---CccC-EEEEccccCCCCCCHHHHHHHHHHHHhcCCCch
Confidence            467899999999998889999999999999999887754   4674 56666654431      1122   667788999


Q ss_pred             cEEEEeCCc
Q 044162          224 SIVIVDDTE  232 (369)
Q Consensus       224 ~vvIvDD~~  232 (369)
                      .++.|+|+.
T Consensus       174 ~~~~vGD~~  182 (240)
T 3smv_A          174 DILHTAESL  182 (240)
T ss_dssp             GEEEEESCT
T ss_pred             hEEEECCCc
Confidence            999999995

>3umc_A Haloacid dehalogenase; HY; 2.15A {Pseudomonas aeruginosa}

Probab=94.24  E-value=0.042  Score=48.67  Aligned_cols=80  Identities=6%  Similarity=0.005  Sum_probs=61.7

Q ss_pred             EEeCccHHHHHHHHhcCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCcEE
Q 044162          153 VKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENSIV  226 (369)
Q Consensus       153 vklRPgl~eFL~~ls~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~vv  226 (369)
                      ....|++.++|+.+.+.+.++|.|++...++..+++.++..   | +.+++.+.....      +.+-++.++.+.+.++
T Consensus       119 ~~~~~~~~~~l~~l~~~~~~~i~s~~~~~~~~~~l~~~g~~---f-~~~~~~~~~~~~kp~~~~~~~~~~~lgi~~~~~~  194 (254)
T 3umc_A          119 LRPWPDTLAGMHALKADYWLAALSNGNTALMLDVARHAGLP---W-DMLLCADLFGHYKPDPQVYLGACRLLDLPPQEVM  194 (254)
T ss_dssp             CEECTTHHHHHHHHTTTSEEEECCSSCHHHHHHHHHHHTCC---C-SEECCHHHHTCCTTSHHHHHHHHHHHTCCGGGEE
T ss_pred             CCCCccHHHHHHHHHhcCeEEEEeCCCHHHHHHHHHHcCCC---c-ceEEeecccccCCCCHHHHHHHHHHcCCChHHEE
Confidence            46789999999999877999999999999999999988764   5 345555543321      2344566788899999


Q ss_pred             EEeCCccccc
Q 044162          227 IVDDTESVWG  236 (369)
Q Consensus       227 IvDD~~~~w~  236 (369)
                      .|+|+..-..
T Consensus       195 ~iGD~~~Di~  204 (254)
T 3umc_A          195 LCAAHNYDLK  204 (254)
T ss_dssp             EEESCHHHHH
T ss_pred             EEcCchHhHH
Confidence            9999975443

>3dv9_A Beta-phosphoglucomutase; structural genomics, APC60149, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.72A {Bacteroides vulgatus}

Probab=94.09  E-value=0.042  Score=48.34  Aligned_cols=88  Identities=13%  Similarity=-0.023  Sum_probs=61.6

Q ss_pred             EEeCccHHHHHHHHhc-CccEEEecCCcHHHHHHHHHHhCCCCCccc-ceEEeeccccCc------ccccccccCCCCCc
Q 044162          153 VKLRPFVRSFLEEASR-LFEISVCTLGNREYATRAVKLLDPDCKYFN-SRIITREDFKQK------ERKYLDLVLGQENS  224 (369)
Q Consensus       153 vklRPgl~eFL~~ls~-~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~-~Ri~srd~~~~~------~~KdL~~l~~~~~~  224 (369)
                      ....||+.++|+.+.+ .+.++|.|++.+.++..+++. +-. .+|. +.+++.++....      +.+-++.++.+.+.
T Consensus       107 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~-~l~-~~f~~~~~~~~~~~~~~kp~~~~~~~~~~~lg~~~~~  184 (247)
T 3dv9_A          107 AERMPGALEVLTKIKSEGLTPMVVTGSGQTSLLDRLNH-NFP-GIFQANLMVTAFDVKYGKPNPEPYLMALKKGGFKPNE  184 (247)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEECSCC---CHHHHHH-HST-TTCCGGGEECGGGCSSCTTSSHHHHHHHHHHTCCGGG
T ss_pred             CCCCCCHHHHHHHHHHcCCcEEEEcCCchHHHHHHHHh-hHH-HhcCCCeEEecccCCCCCCCCHHHHHHHHHcCCChhh
Confidence            5678999999999985 599999999999999999887 554 4673 356666654432      23345567888999


Q ss_pred             EEEEeCCccccccCCCce
Q 044162          225 IVIVDDTESVWGGRVENL  242 (369)
Q Consensus       225 vvIvDD~~~~w~~~~~N~  242 (369)
                      ++.|+|+..-.......|
T Consensus       185 ~i~vGD~~~Di~~a~~aG  202 (247)
T 3dv9_A          185 ALVIENAPLGVQAGVAAG  202 (247)
T ss_dssp             EEEEECSHHHHHHHHHTT
T ss_pred             eEEEeCCHHHHHHHHHCC
Confidence            999999985443323334

>3qxg_A Inorganic pyrophosphatase; hydrolase, magnesium binding site, NEW YORK research center for structural genomics; HET: TLA; 1.24A {Bacteroides thetaiotaomicron} PDB: 3qu2_A* 3qx7_A 3quq_A* 3r9k_A 3qut_A 3qu9_A* 3qu7_A 3qu5_A 3qyp_A 3quc_A 3qub_A 3qu4_A

Probab=94.01  E-value=0.041  Score=48.76  Aligned_cols=89  Identities=12%  Similarity=-0.003  Sum_probs=64.8

Q ss_pred             EEeCccHHHHHHHHhc-CccEEEecCCcHHHHHHHHHHhCCCCCccc-ceEEeeccccCc------ccccccccCCCCCc
Q 044162          153 VKLRPFVRSFLEEASR-LFEISVCTLGNREYATRAVKLLDPDCKYFN-SRIITREDFKQK------ERKYLDLVLGQENS  224 (369)
Q Consensus       153 vklRPgl~eFL~~ls~-~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~-~Ri~srd~~~~~------~~KdL~~l~~~~~~  224 (369)
                      ..+.||+.++|+.+.+ .+.++|.|++.+.++..+++. +-. .+|. +.+++.++....      +.+-++.++.+.+.
T Consensus       108 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~-~l~-~~f~~d~i~~~~~~~~~kp~~~~~~~~~~~lg~~~~~  185 (243)
T 3qxg_A          108 AERMPGAWELLQKVKSEGLTPMVVTGSGQLSLLERLEH-NFP-GMFHKELMVTAFDVKYGKPNPEPYLMALKKGGLKADE  185 (243)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEECCCCCHHHHTTHHH-HST-TTCCGGGEECTTTCSSCTTSSHHHHHHHHHTTCCGGG
T ss_pred             CCCCCCHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHH-hHH-HhcCcceEEeHHhCCCCCCChHHHHHHHHHcCCCHHH
Confidence            5678999999999985 599999999999999988887 554 4673 346666654321      33445667889999


Q ss_pred             EEEEeCCccccccCCCceE
Q 044162          225 IVIVDDTESVWGGRVENLI  243 (369)
Q Consensus       225 vvIvDD~~~~w~~~~~N~I  243 (369)
                      ++.|+|+..-.......|+
T Consensus       186 ~i~vGD~~~Di~~a~~aG~  204 (243)
T 3qxg_A          186 AVVIENAPLGVEAGHKAGI  204 (243)
T ss_dssp             EEEEECSHHHHHHHHHTTC
T ss_pred             eEEEeCCHHHHHHHHHCCC
Confidence            9999999854433333444

>3k1z_A Haloacid dehalogenase-like hydrolase domain-conta protein 3; HDHD3, haloacid dehalogenase-like hydrolase domain containin structural genomics; 1.55A {Homo sapiens}

Probab=93.98  E-value=0.049  Score=49.39  Aligned_cols=92  Identities=14%  Similarity=0.003  Sum_probs=65.2

Q ss_pred             EEeCccHHHHHHHHhc-CccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCcE
Q 044162          153 VKLRPFVRSFLEEASR-LFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENSI  225 (369)
Q Consensus       153 vklRPgl~eFL~~ls~-~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~v  225 (369)
                      +.+.||+.++|+.+.+ .+.++|.|++.+. +..+++.++.. .+|. .+++.++....      +.+-++.++.+.+.+
T Consensus       105 ~~~~~~~~~~l~~l~~~g~~~~i~tn~~~~-~~~~l~~~gl~-~~f~-~~~~~~~~~~~Kp~~~~~~~~~~~~g~~~~~~  181 (263)
T 3k1z_A          105 WQVLDGAEDTLRECRTRGLRLAVISNFDRR-LEGILGGLGLR-EHFD-FVLTSEAAGWPKPDPRIFQEALRLAHMEPVVA  181 (263)
T ss_dssp             EEECTTHHHHHHHHHHTTCEEEEEESCCTT-HHHHHHHTTCG-GGCS-CEEEHHHHSSCTTSHHHHHHHHHHHTCCGGGE
T ss_pred             ceECcCHHHHHHHHHhCCCcEEEEeCCcHH-HHHHHHhCCcH-Hhhh-EEEeecccCCCCCCHHHHHHHHHHcCCCHHHE
Confidence            5788999999999985 5999999998874 68888888866 3674 46666654421      334456678889999


Q ss_pred             EEEeCCc-cccccCCCceEEeCc
Q 044162          226 VIVDDTE-SVWGGRVENLITVGS  247 (369)
Q Consensus       226 vIvDD~~-~~w~~~~~N~I~I~~  247 (369)
                      ++|+|++ .-.......|+.+--
T Consensus       182 ~~vGD~~~~Di~~a~~aG~~~i~  204 (263)
T 3k1z_A          182 AHVGDNYLCDYQGPRAVGMHSFL  204 (263)
T ss_dssp             EEEESCHHHHTHHHHTTTCEEEE
T ss_pred             EEECCCcHHHHHHHHHCCCEEEE
Confidence            9999996 323222344554433

>2om6_A Probable phosphoserine phosphatase; rossmann fold, B-hairpin, four-helix bundle, structural GENO NPPSFA; 2.20A {Pyrococcus horikoshii}

Probab=93.75  E-value=0.08  Score=45.89  Aligned_cols=76  Identities=9%  Similarity=0.029  Sum_probs=58.7

Q ss_pred             eCccHHHHHHHHhc-CccEEEecCCc---HHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCc
Q 044162          155 LRPFVRSFLEEASR-LFEISVCTLGN---REYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENS  224 (369)
Q Consensus       155 lRPgl~eFL~~ls~-~yEi~I~T~g~---~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~  224 (369)
                      ..|++.++|+.+.+ .+.++|.|++.   +.++..+++.++.. .+|. .+++.++....      +.+-++.++.+.+.
T Consensus       100 ~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~~~~l~~~~l~-~~f~-~~~~~~~~~~~kp~~~~~~~~~~~lgi~~~~  177 (235)
T 2om6_A          100 VLEGTKEALQFVKERGLKTAVIGNVMFWPGSYTRLLLERFGLM-EFID-KTFFADEVLSYKPRKEMFEKVLNSFEVKPEE  177 (235)
T ss_dssp             BCTTHHHHHHHHHHTTCEEEEEECCCSSCHHHHHHHHHHTTCG-GGCS-EEEEHHHHTCCTTCHHHHHHHHHHTTCCGGG
T ss_pred             cCccHHHHHHHHHHCCCEEEEEcCCcccchhHHHHHHHhCCcH-HHhh-hheeccccCCCCCCHHHHHHHHHHcCCCccc
Confidence            48999999999985 59999999999   99999999988766 3674 45555543321      22335567788999


Q ss_pred             EEEEeCCc
Q 044162          225 IVIVDDTE  232 (369)
Q Consensus       225 vvIvDD~~  232 (369)
                      ++.|+|++
T Consensus       178 ~~~iGD~~  185 (235)
T 2om6_A          178 SLHIGDTY  185 (235)
T ss_dssp             EEEEESCT
T ss_pred             eEEECCCh
Confidence            99999998

>4g9b_A Beta-PGM, beta-phosphoglucomutase; HAD, putative phosphoglucomutase, enzyme function initiative structural genomics, isomerase; 1.70A {Escherichia coli}

Probab=93.75  E-value=0.056  Score=48.61  Aligned_cols=79  Identities=11%  Similarity=0.148  Sum_probs=60.9

Q ss_pred             EeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCcEE
Q 044162          154 KLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENSIV  226 (369)
Q Consensus       154 klRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~vv  226 (369)
                      .+.||+.++|+.+. ..+.+.+.|++.+  +..+++.++-. .+|. .+++.++....      +.+-+++++.+++.+|
T Consensus        95 ~~~pg~~~ll~~L~~~g~~i~i~t~~~~--~~~~l~~~gl~-~~fd-~i~~~~~~~~~KP~p~~~~~a~~~lg~~p~e~l  170 (243)
T 4g9b_A           95 AVLPGIRSLLADLRAQQISVGLASVSLN--APTILAALELR-EFFT-FCADASQLKNSKPDPEIFLAACAGLGVPPQACI  170 (243)
T ss_dssp             GBCTTHHHHHHHHHHTTCEEEECCCCTT--HHHHHHHTTCG-GGCS-EECCGGGCSSCTTSTHHHHHHHHHHTSCGGGEE
T ss_pred             cccccHHHHHHhhhcccccceecccccc--hhhhhhhhhhc-cccc-cccccccccCCCCcHHHHHHHHHHcCCChHHEE
Confidence            46899999999996 6788999998654  67788888876 4774 57766665431      5566778899999999


Q ss_pred             EEeCCccccc
Q 044162          227 IVDDTESVWG  236 (369)
Q Consensus       227 IvDD~~~~w~  236 (369)
                      +|+|++.-..
T Consensus       171 ~VgDs~~di~  180 (243)
T 4g9b_A          171 GIEDAQAGID  180 (243)
T ss_dssp             EEESSHHHHH
T ss_pred             EEcCCHHHHH
Confidence            9999985443

>3nas_A Beta-PGM, beta-phosphoglucomutase; PSI, structural genomics, protein structure initiative, NEW research center for structural genomics; 3.00A {Bacillus subtilis}

Probab=93.70  E-value=0.056  Score=47.24  Aligned_cols=87  Identities=11%  Similarity=0.072  Sum_probs=59.7

Q ss_pred             eCccHHHHHHHHhcC-ccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccC------cccccccccCCCCCcEEE
Q 044162          155 LRPFVRSFLEEASRL-FEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQ------KERKYLDLVLGQENSIVI  227 (369)
Q Consensus       155 lRPgl~eFL~~ls~~-yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~------~~~KdL~~l~~~~~~vvI  227 (369)
                      +.||+.++|+.+.+. +.++|.|++.+  +..+++.++-.+ +|. .+++.++...      .+.+-++.++.+.+.+++
T Consensus        93 ~~~~~~~~l~~l~~~g~~~~i~t~~~~--~~~~l~~~gl~~-~f~-~i~~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~i~  168 (233)
T 3nas_A           93 LLPGIGRLLCQLKNENIKIGLASSSRN--APKILRRLAIID-DFH-AIVDPTTLAKGKPDPDIFLTAAAMLDVSPADCAA  168 (233)
T ss_dssp             SCTTHHHHHHHHHHTTCEEEECCSCTT--HHHHHHHTTCTT-TCS-EECCC---------CCHHHHHHHHHTSCGGGEEE
T ss_pred             cCcCHHHHHHHHHHCCCcEEEEcCchh--HHHHHHHcCcHh-hcC-EEeeHhhCCCCCCChHHHHHHHHHcCCCHHHEEE
Confidence            689999999999854 99999999865  888888888664 674 4555555432      133445667888999999


Q ss_pred             EeCCccccccCCCceEEe
Q 044162          228 VDDTESVWGGRVENLITV  245 (369)
Q Consensus       228 vDD~~~~w~~~~~N~I~I  245 (369)
                      |+|+..-.......|+.+
T Consensus       169 vGDs~~Di~~a~~aG~~~  186 (233)
T 3nas_A          169 IEDAEAGISAIKSAGMFA  186 (233)
T ss_dssp             EECSHHHHHHHHHTTCEE
T ss_pred             EeCCHHHHHHHHHcCCEE
Confidence            999974443323344433

>1te2_A Putative phosphatase; structural genomics, phosphates, PSI, protein S initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Escherichia coli} SCOP: c.108.1.6

Probab=93.65  E-value=0.12  Score=44.41  Aligned_cols=91  Identities=10%  Similarity=0.056  Sum_probs=64.7

Q ss_pred             EEeCccHHHHHHHHhc-CccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCcE
Q 044162          153 VKLRPFVRSFLEEASR-LFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENSI  225 (369)
Q Consensus       153 vklRPgl~eFL~~ls~-~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~v  225 (369)
                      ....|++.++|+.+.+ .+.++|.|++.+.++..+++.++.. .+|. .+++.++....      +.+-++.++.+.+.+
T Consensus        93 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~~~-~~~~-~~~~~~~~~~~kp~~~~~~~~~~~~~i~~~~~  170 (226)
T 1te2_A           93 RPLLPGVREAVALCKEQGLLVGLASASPLHMLEKVLTMFDLR-DSFD-ALASAEKLPYSKPHPQVYLDCAAKLGVDPLTC  170 (226)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCG-GGCS-EEEECTTSSCCTTSTHHHHHHHHHHTSCGGGE
T ss_pred             CCcCccHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhcCcH-hhCc-EEEeccccCCCCCChHHHHHHHHHcCCCHHHe
Confidence            4678999999999975 5999999999999999999988765 3674 45555554321      122344567788999


Q ss_pred             EEEeCCccccccCCCceEEe
Q 044162          226 VIVDDTESVWGGRVENLITV  245 (369)
Q Consensus       226 vIvDD~~~~w~~~~~N~I~I  245 (369)
                      +.|+|+..-.......++.+
T Consensus       171 i~iGD~~nDi~~a~~aG~~~  190 (226)
T 1te2_A          171 VALEDSVNGMIASKAARMRS  190 (226)
T ss_dssp             EEEESSHHHHHHHHHTTCEE
T ss_pred             EEEeCCHHHHHHHHHcCCEE
Confidence            99999985554323334433

>3umg_A Haloacid dehalogenase; defluorinase, hydrolase; 2.25A {Rhodococcus jostii}

Probab=93.65  E-value=0.037  Score=48.72  Aligned_cols=80  Identities=10%  Similarity=0.009  Sum_probs=60.4

Q ss_pred             EEeCccHHHHHHHHhcCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCcEE
Q 044162          153 VKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENSIV  226 (369)
Q Consensus       153 vklRPgl~eFL~~ls~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~vv  226 (369)
                      +...|++.++|+.+.+.+.++|.|++.+.++..+++.++..   |. .+++.++....      +.+-++.++.+.+.++
T Consensus       115 ~~~~~~~~~~l~~l~~~~~~~i~t~~~~~~~~~~l~~~~~~---f~-~~~~~~~~~~~kp~~~~~~~~~~~lgi~~~~~~  190 (254)
T 3umg_A          115 LTPWPDSVPGLTAIKAEYIIGPLSNGNTSLLLDMAKNAGIP---WD-VIIGSDINRKYKPDPQAYLRTAQVLGLHPGEVM  190 (254)
T ss_dssp             CCBCTTHHHHHHHHHHHSEEEECSSSCHHHHHHHHHHHTCC---CS-CCCCHHHHTCCTTSHHHHHHHHHHTTCCGGGEE
T ss_pred             CcCCcCHHHHHHHHHhCCeEEEEeCCCHHHHHHHHHhCCCC---ee-EEEEcCcCCCCCCCHHHHHHHHHHcCCChHHEE
Confidence            46689999999999866999999999999999999988654   53 34444443321      2334556788899999


Q ss_pred             EEeCCccccc
Q 044162          227 IVDDTESVWG  236 (369)
Q Consensus       227 IvDD~~~~w~  236 (369)
                      .|+|+..-..
T Consensus       191 ~iGD~~~Di~  200 (254)
T 3umg_A          191 LAAAHNGDLE  200 (254)
T ss_dssp             EEESCHHHHH
T ss_pred             EEeCChHhHH
Confidence            9999975443

>3ewi_A N-acylneuraminate cytidylyltransferase; beta barrel, HAD-like, rossmannoid fold, nucleotidyltransferase, nucleus; 1.90A {Mus musculus}

Probab=93.43  E-value=0.048  Score=47.24  Aligned_cols=115  Identities=10%  Similarity=-0.010  Sum_probs=67.7

Q ss_pred             CceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHHHHHHHh-cCc
Q 044162           92 RKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEAS-RLF  170 (369)
Q Consensus        92 ~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~eFL~~ls-~~y  170 (369)
                      +-..||+|+||||+.....-  ++.                     ...         .-.+.+|.+.  .|+.+. ..+
T Consensus         8 ~ikliv~D~DGtL~d~~~~~--~~~---------------------g~~---------~~~f~~~D~~--~L~~Lk~~Gi   53 (168)
T 3ewi_A            8 EIKLLVCNIDGCLTNGHIYV--SGD---------------------QKE---------IISYDVKDAI--GISLLKKSGI   53 (168)
T ss_dssp             CCCEEEEECCCCCSCSCCBC--CSS---------------------CCC---------EEEEEHHHHH--HHHHHHHTTC
T ss_pred             cCcEEEEeCccceECCcEEE--cCC---------------------CCE---------EEEEecCcHH--HHHHHHHCCC
Confidence            34578999999999765321  100                     000         1123445553  577776 679


Q ss_pred             cEEEecCCcHHHHHHHHH--HhCCCCCcccceEEeeccccCcccccccccCCCCCcEEEEeCCccccccCCCceEEeCcc
Q 044162          171 EISVCTLGNREYATRAVK--LLDPDCKYFNSRIITREDFKQKERKYLDLVLGQENSIVIVDDTESVWGGRVENLITVGSY  248 (369)
Q Consensus       171 Ei~I~T~g~~~YA~~i~~--~lDp~~~~f~~Ri~srd~~~~~~~KdL~~l~~~~~~vvIvDD~~~~w~~~~~N~I~I~~y  248 (369)
                      .+.|-|+.  ..+..+++  .++..  +|..    ..+-.....+=++.++.+.+.++.|-|+..-.+.-...++.+-+-
T Consensus        54 ~~~I~Tg~--~~~~~~l~~l~lgi~--~~~g----~~~K~~~l~~~~~~~gi~~~~~~~vGD~~nDi~~~~~ag~~~a~~  125 (168)
T 3ewi_A           54 EVRLISER--ACSKQTLSALKLDCK--TEVS----VSDKLATVDEWRKEMGLCWKEVAYLGNEVSDEECLKRVGLSAVPA  125 (168)
T ss_dssp             EEEEECSS--CCCHHHHHTTCCCCC--EECS----CSCHHHHHHHHHHHTTCCGGGEEEECCSGGGHHHHHHSSEEEECT
T ss_pred             EEEEEeCc--HHHHHHHHHhCCCcE--EEEC----CCChHHHHHHHHHHcCcChHHEEEEeCCHhHHHHHHHCCCEEEeC
Confidence            99999988  78888998  45433  3321    111111112223456678889999999886554433455665543

>2dun_A POL MU, DNA polymerase MU; layers A/B/A, parallel beta-sheet of 4 strands, non- homologous END jonting, somatic hypermutation, V(D)J recombination; HET: DNA; NMR {Homo sapiens} PDB: 2htf_A*

Probab=93.41  E-value=0.046  Score=45.85  Aligned_cols=46  Identities=20%  Similarity=0.149  Sum_probs=33.9

Q ss_pred             hhcCceEEecccCCCCC---hhHHHHHHhcCCEEEeccCCCceEEEecCC
Q 044162          314 ILMGCTILFGDDDFEEL---PLTWSRAEEMGAICTLVTDASVTHVVSSNT  360 (369)
Q Consensus       314 VL~g~~ivFSg~~p~~~---p~lw~la~~~GA~v~~~i~~~vTHvVa~~~  360 (369)
                      .|.|+.|.+=+.-. +.   .-+-+||.+.|+++.+++.+.|||||+.+.
T Consensus        10 ~F~~v~iyive~km-G~sRr~fL~~la~~kGf~v~~~~S~~VTHVV~E~~   58 (133)
T 2dun_A           10 RFPGVAIYLVEPRM-GRSRRAFLTGLARSKGFRVLDACSSEATHVVMEET   58 (133)
T ss_dssp             SEEEEEEEECHHHH-CSHHHHHHHHHHHHHTEEECSSCCTTCCEEEESSC
T ss_pred             ccCccEEEEecCCc-CHHHHHHHHHHHHhcCCEeccccCCCceEEEecCC
Confidence            45666666543211 21   267789999999999999999999999654

>3kc2_A Uncharacterized protein YKR070W; HAD-like, mitochondral protein, PSI, MCSG, structural genomi protein structure initiative; HET: MSE; 1.55A {Saccharomyces cerevisiae} PDB: 3rf6_A*

Probab=93.11  E-value=0.14  Score=49.79  Aligned_cols=56  Identities=18%  Similarity=0.164  Sum_probs=44.7

Q ss_pred             CceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHHHHHHHh-cCc
Q 044162           92 RKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEAS-RLF  170 (369)
Q Consensus        92 ~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~eFL~~ls-~~y  170 (369)
                      ++..+++|+||||++...                                             .=||+.++|+.+. ..+
T Consensus        12 ~~~~~l~D~DGvl~~g~~---------------------------------------------~~p~a~~~l~~l~~~g~   46 (352)
T 3kc2_A           12 KKIAFAFDIDGVLFRGKK---------------------------------------------PIAGASDALKLLNRNKI   46 (352)
T ss_dssp             CCEEEEECCBTTTEETTE---------------------------------------------ECTTHHHHHHHHHHTTC
T ss_pred             cCCEEEEECCCeeEcCCe---------------------------------------------eCcCHHHHHHHHHHCCC
Confidence            678899999999997431                                             0189999999997 678


Q ss_pred             cEEEecCCc----HHHHHHHHHHhCC
Q 044162          171 EISVCTLGN----REYATRAVKLLDP  192 (369)
Q Consensus       171 Ei~I~T~g~----~~YA~~i~~~lDp  192 (369)
                      .+++.|+++    +.+|+.+.+.++-
T Consensus        47 ~~~~vTNn~~~~~~~~~~~l~~~lgi   72 (352)
T 3kc2_A           47 PYILLTNGGGFSERARTEFISSKLDV   72 (352)
T ss_dssp             CEEEECSCCSSCHHHHHHHHHHHHTS
T ss_pred             EEEEEeCCCCCCchHHHHHHHHhcCC
Confidence            999999875    7888888865553

>2go7_A Hydrolase, haloacid dehalogenase-like family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.10A {Streptococcus pneumoniae} SCOP: c.108.1.6

Probab=93.07  E-value=0.15  Score=42.86  Aligned_cols=81  Identities=21%  Similarity=0.137  Sum_probs=59.7

Q ss_pred             EEeCccHHHHHHHHhc-CccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCcE
Q 044162          153 VKLRPFVRSFLEEASR-LFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENSI  225 (369)
Q Consensus       153 vklRPgl~eFL~~ls~-~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~v  225 (369)
                      ...+|++.++|+.+.+ .+.++|+|++...++. +++.++.. .+|. .+++.++....      +.+-++.++.+.+.+
T Consensus        84 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~-~~~~~~~~-~~f~-~~~~~~~~~~~Kp~~~~~~~~~~~~~i~~~~~  160 (207)
T 2go7_A           84 VVLMPGAREVLAWADESGIQQFIYTHKGNNAFT-ILKDLGVE-SYFT-EILTSQSGFVRKPSPEAATYLLDKYQLNSDNT  160 (207)
T ss_dssp             CEECTTHHHHHHHHHHTTCEEEEECSSCTHHHH-HHHHHTCG-GGEE-EEECGGGCCCCTTSSHHHHHHHHHHTCCGGGE
T ss_pred             ceeCcCHHHHHHHHHHCCCeEEEEeCCchHHHH-HHHHcCch-hhee-eEEecCcCCCCCCCcHHHHHHHHHhCCCcccE
Confidence            5678999999999986 5999999999999999 98888765 3664 45554443221      122234567788999


Q ss_pred             EEEeCCccccc
Q 044162          226 VIVDDTESVWG  236 (369)
Q Consensus       226 vIvDD~~~~w~  236 (369)
                      +.|+|+..-..
T Consensus       161 ~~iGD~~nDi~  171 (207)
T 2go7_A          161 YYIGDRTLDVE  171 (207)
T ss_dssp             EEEESSHHHHH
T ss_pred             EEECCCHHHHH
Confidence            99999975554

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=92.97  E-value=0.023  Score=52.97  Aligned_cols=88  Identities=10%  Similarity=0.030  Sum_probs=55.3

Q ss_pred             EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHH---HHHH--------hCCCCCcccceEEeeccccCc-----ccccc
Q 044162          153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATR---AVKL--------LDPDCKYFNSRIITREDFKQK-----ERKYL  215 (369)
Q Consensus       153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~---i~~~--------lDp~~~~f~~Ri~srd~~~~~-----~~KdL  215 (369)
                      ..+.||+.++|+.+. +.+.+.|.|+..+.++..   +++.        ++.   +| +-++++++....     +.+-+
T Consensus       187 ~~~~~g~~e~L~~L~~~g~~~~v~T~k~~~~~~~~~~~l~~~~~~~~~~~~~---~~-~~~~~~~~~~~kp~p~~~~~~~  262 (301)
T 1ltq_A          187 DVINPMVVELSKMYALMGYQIVVVSGRESGTKEDPTKYYRMTRKWVEDIAGV---PL-VMQCQREQGDTRKDDVVKEEIF  262 (301)
T ss_dssp             CCBCHHHHHHHHHHHHTTCEEEEEECSCCCCSSSTTHHHHHHHHHHHHTTCC---CC-SEEEECCTTCCSCHHHHHHHHH
T ss_pred             cCCChHHHHHHHHHHHCCCeEEEEeCCCcccchhHHHHHHhcccccccccCC---Cc-hheeeccCCCCcHHHHHHHHHH
Confidence            456899999999997 579999999999887644   4544        333   45 346656554211     11223


Q ss_pred             cccCCCC-CcEEEEeCCccccccCCCceEE
Q 044162          216 DLVLGQE-NSIVIVDDTESVWGGRVENLIT  244 (369)
Q Consensus       216 ~~l~~~~-~~vvIvDD~~~~w~~~~~N~I~  244 (369)
                      +.+..+. +.+++|+|++.-......+++.
T Consensus       263 ~~~~~~~~~~~~~vgD~~~di~~a~~aG~~  292 (301)
T 1ltq_A          263 WKHIAPHFDVKLAIDDRTQVVEMWRRIGVE  292 (301)
T ss_dssp             HHHTTTTCEEEEEEECCHHHHHHHHHTTCC
T ss_pred             HHHhccccceEEEeCCcHHHHHHHHHcCCe
Confidence            3344443 3468899998665443344543

>3d6j_A Putative haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}

Probab=92.90  E-value=0.15  Score=43.64  Aligned_cols=90  Identities=17%  Similarity=0.136  Sum_probs=63.7

Q ss_pred             EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCcE
Q 044162          153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENSI  225 (369)
Q Consensus       153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~v  225 (369)
                      +...|++.++|+.+. ..+.++|.|++.+.++..+++.++... +|. .+++.++....      +.+-++.++.+.+.+
T Consensus        88 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~  165 (225)
T 3d6j_A           88 TILFPDTLPTLTHLKKQGIRIGIISTKYRFRILSFLRNHMPDD-WFD-IIIGGEDVTHHKPDPEGLLLAIDRLKACPEEV  165 (225)
T ss_dssp             CEECTTHHHHHHHHHHHTCEEEEECSSCHHHHHHHHHTSSCTT-CCS-EEECGGGCSSCTTSTHHHHHHHHHTTCCGGGE
T ss_pred             CccCcCHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHcCchh-hee-eeeehhhcCCCCCChHHHHHHHHHhCCChHHe
Confidence            456899999999997 469999999999999999999887653 564 45555543321      122345567788999


Q ss_pred             EEEeCCccccccCCCceEE
Q 044162          226 VIVDDTESVWGGRVENLIT  244 (369)
Q Consensus       226 vIvDD~~~~w~~~~~N~I~  244 (369)
                      +.|+|+..-...-...++.
T Consensus       166 i~iGD~~nDi~~~~~aG~~  184 (225)
T 3d6j_A          166 LYIGDSTVDAGTAAAAGVS  184 (225)
T ss_dssp             EEEESSHHHHHHHHHHTCE
T ss_pred             EEEcCCHHHHHHHHHCCCe
Confidence            9999998544332233443

>2qlt_A (DL)-glycerol-3-phosphatase 1; APC7326, RHR2P, saccharom cerevisiae, structural genomics, PSI-2, protein structure initiative; 1.60A {Saccharomyces cerevisiae}

Probab=92.83  E-value=0.19  Score=45.81  Aligned_cols=81  Identities=19%  Similarity=0.093  Sum_probs=61.6

Q ss_pred             EEeCccHHHHHHHHhc--CccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCC----
Q 044162          153 VKLRPFVRSFLEEASR--LFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLG----  220 (369)
Q Consensus       153 vklRPgl~eFL~~ls~--~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~----  220 (369)
                      ....||+.++|+.+.+  .+.+.|.|++.+.++..+++.++..  .| +.+++.++....      +.+-++.++.    
T Consensus       113 ~~~~~g~~~~L~~l~~~~g~~l~i~T~~~~~~~~~~l~~~~l~--~f-~~i~~~~~~~~~kp~~~~~~~~~~~lgi~~~~  189 (275)
T 2qlt_A          113 SIEVPGAVKLCNALNALPKEKWAVATSGTRDMAKKWFDILKIK--RP-EYFITANDVKQGKPHPEPYLKGRNGLGFPINE  189 (275)
T ss_dssp             CEECTTHHHHHHHHHTSCGGGEEEECSSCHHHHHHHHHHHTCC--CC-SSEECGGGCSSCTTSSHHHHHHHHHTTCCCCS
T ss_pred             CCcCcCHHHHHHHHHhccCCeEEEEeCCCHHHHHHHHHHcCCC--cc-CEEEEcccCCCCCCChHHHHHHHHHcCCCccc
Confidence            5678999999999986  5999999999999999999988765  35 346666654321      2233456677    


Q ss_pred             ---CCCcEEEEeCCccccc
Q 044162          221 ---QENSIVIVDDTESVWG  236 (369)
Q Consensus       221 ---~~~~vvIvDD~~~~w~  236 (369)
                         +.+.++.|.|++.-..
T Consensus       190 ~~~~~~~~i~~GDs~nDi~  208 (275)
T 2qlt_A          190 QDPSKSKVVVFEDAPAGIA  208 (275)
T ss_dssp             SCGGGSCEEEEESSHHHHH
T ss_pred             cCCCcceEEEEeCCHHHHH
Confidence               8899999999985543

>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD superfamily, structural genomi structural genomics/proteomics initiative, RSGI; 1.60A {Pyrococcus horikoshii} SCOP: c.108.1.10

Probab=92.82  E-value=0.18  Score=44.98  Aligned_cols=38  Identities=16%  Similarity=0.062  Sum_probs=29.2

Q ss_pred             ccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCC
Q 044162          157 PFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDC  194 (369)
Q Consensus       157 Pgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~  194 (369)
                      |...+.|+++. +...+++.|.-+...+..+++.++...
T Consensus        23 ~~~~~al~~l~~~G~~v~i~TGR~~~~~~~~~~~l~~~~   61 (231)
T 1wr8_A           23 EKALEAIRRAESLGIPIMLVTGNTVQFAEAASILIGTSG   61 (231)
T ss_dssp             HHHHHHHHHHHHTTCCEEEECSSCHHHHHHHHHHHTCCS
T ss_pred             HHHHHHHHHHHHCCCEEEEEcCCChhHHHHHHHHcCCCC
Confidence            55667777774 678888999888888888888887653

>2p11_A Hypothetical protein; putative haloacid dehalogenase-like hydrolase, structural GE joint center for structural genomics, JCSG; 2.20A {Burkholderia xenovorans}

Probab=92.82  E-value=0.056  Score=47.87  Aligned_cols=78  Identities=13%  Similarity=0.025  Sum_probs=55.6

Q ss_pred             EEeCccHHHHHHHHhcCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCcccccccccCCCCCcEEEEeCCc
Q 044162          153 VKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKYLDLVLGQENSIVIVDDTE  232 (369)
Q Consensus       153 vklRPgl~eFL~~ls~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~~~KdL~~l~~~~~~vvIvDD~~  232 (369)
                      +.+.||+.++|+.+.+...++|.|++.+.++..+++.++-. .+|...+... .......+.+.. +.+.+.+++|+|++
T Consensus        95 ~~~~~g~~~~l~~l~~~g~~~i~Tn~~~~~~~~~l~~~gl~-~~f~~~~~~~-~~K~~~~~~~~~-~~~~~~~~~vgDs~  171 (231)
T 2p11_A           95 SRVYPGALNALRHLGARGPTVILSDGDVVFQPRKIARSGLW-DEVEGRVLIY-IHKELMLDQVME-CYPARHYVMVDDKL  171 (231)
T ss_dssp             GGBCTTHHHHHHHHHTTSCEEEEEECCSSHHHHHHHHTTHH-HHTTTCEEEE-SSGGGCHHHHHH-HSCCSEEEEECSCH
T ss_pred             CCcCccHHHHHHHHHhCCCEEEEeCCCHHHHHHHHHHcCcH-HhcCeeEEec-CChHHHHHHHHh-cCCCceEEEEcCcc
Confidence            56789999999999865599999999999999999988765 3665433211 111112222222 45778999999998


Q ss_pred             c
Q 044162          233 S  233 (369)
Q Consensus       233 ~  233 (369)
                      .
T Consensus       172 ~  172 (231)
T 2p11_A          172 R  172 (231)
T ss_dssp             H
T ss_pred             c
Confidence            5

>3gyg_A NTD biosynthesis operon putative hydrolase NTDB; PF05116, PF08282, MCSG, PSI-2, haloacid dehalogenase-like HY structural genomics; 2.45A {Bacillus subtilis subsp}

Probab=92.43  E-value=0.19  Score=46.15  Aligned_cols=90  Identities=8%  Similarity=-0.137  Sum_probs=50.0

Q ss_pred             eCccHHHHHHHHhcC--ccEEEecCC---------------------cHHHHHHHHHHhCCCCCcccceE----------
Q 044162          155 LRPFVRSFLEEASRL--FEISVCTLG---------------------NREYATRAVKLLDPDCKYFNSRI----------  201 (369)
Q Consensus       155 lRPgl~eFL~~ls~~--yEi~I~T~g---------------------~~~YA~~i~~~lDp~~~~f~~Ri----------  201 (369)
                      .+|++.+.|+.+.+.  +.+.+.|..                     ....+..+++..+... +|. ++          
T Consensus       123 ~~~~v~e~l~~l~~~~g~~l~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~-~~~-~~~~~~~~~~~~  200 (289)
T 3gyg_A          123 SKEKVEKLVKQLHENHNILLNPQTQLGKSRYKHNFYYQEQDEINDKKNLLAIEKICEEYGVSV-NIN-RCNPLAGDPEDS  200 (289)
T ss_dssp             CHHHHHHHHHHHHHHSSCCCEEGGGTCGGGTTCCEEEECCCHHHHHHHHHHHHHHHHHHTEEE-EEE-ECCGGGTCCTTE
T ss_pred             CHHHHHHHHHHHHhhhCceeeecccccccceEEEEEEeccccccchHHHHHHHHHHHHcCCCE-EEE-EccccccCCCCc
Confidence            568999999999764  456788876                     4455556665544331 121 00          


Q ss_pred             EeeccccCc------ccccccccCCCCCcEEEEeCCccccccCCCceEEeC
Q 044162          202 ITREDFKQK------ERKYLDLVLGQENSIVIVDDTESVWGGRVENLITVG  246 (369)
Q Consensus       202 ~srd~~~~~------~~KdL~~l~~~~~~vvIvDD~~~~w~~~~~N~I~I~  246 (369)
                      +.-+.....      ..+-++.++.+.+.++.|-|+..-...-...++.|.
T Consensus       201 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~GDs~~D~~~~~~ag~~~~  251 (289)
T 3gyg_A          201 YDVDFIPIGTGKNEIVTFMLEKYNLNTERAIAFGDSGNDVRMLQTVGNGYL  251 (289)
T ss_dssp             EEEEEEESCCSHHHHHHHHHHHHTCCGGGEEEEECSGGGHHHHTTSSEEEE
T ss_pred             eEEEEEeCCCCHHHHHHHHHHHcCCChhhEEEEcCCHHHHHHHHhCCcEEE
Confidence            111111110      112234466778899999998865544334455443

>2fdr_A Conserved hypothetical protein; SAD, structural genomics, agrobacter tumefaciens, HAD-superfamily hydrolase; 2.00A {Agrobacterium tumefaciens str} SCOP: c.108.1.6

Probab=92.13  E-value=0.099  Score=45.28  Aligned_cols=81  Identities=15%  Similarity=0.142  Sum_probs=60.9

Q ss_pred             EEeCccHHHHHHHHhcCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc--------ccccccccCCCCCc
Q 044162          153 VKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK--------ERKYLDLVLGQENS  224 (369)
Q Consensus       153 vklRPgl~eFL~~ls~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~--------~~KdL~~l~~~~~~  224 (369)
                      +...|++.++|+.+..  .++|.|++.+.++..+++.++.. .+|.+.+++.++....        +.+-++.++.+.+.
T Consensus        86 ~~~~~~~~~~l~~l~~--~~~i~s~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~~~~~kpk~~~~~~~~~~l~~~~~~  162 (229)
T 2fdr_A           86 VKIIDGVKFALSRLTT--PRCICSNSSSHRLDMMLTKVGLK-PYFAPHIYSAKDLGADRVKPKPDIFLHGAAQFGVSPDR  162 (229)
T ss_dssp             CCBCTTHHHHHHHCCS--CEEEEESSCHHHHHHHHHHTTCG-GGTTTCEEEHHHHCTTCCTTSSHHHHHHHHHHTCCGGG
T ss_pred             CccCcCHHHHHHHhCC--CEEEEECCChhHHHHHHHhCChH-HhccceEEeccccccCCCCcCHHHHHHHHHHcCCChhH
Confidence            5678999999999875  99999999999999999998765 4673456665543221        22334556778899


Q ss_pred             EEEEeCCccccc
Q 044162          225 IVIVDDTESVWG  236 (369)
Q Consensus       225 vvIvDD~~~~w~  236 (369)
                      ++.|+|+..-..
T Consensus       163 ~i~iGD~~~Di~  174 (229)
T 2fdr_A          163 VVVVEDSVHGIH  174 (229)
T ss_dssp             EEEEESSHHHHH
T ss_pred             eEEEcCCHHHHH
Confidence            999999985554

>1l6r_A Hypothetical protein TA0175; structural genomics, putative hydrolas midwest center for structural genomics, MCSG, PSI; 1.40A {Thermoplasma acidophilum} SCOP: c.108.1.10 PDB: 1kyt_A

Probab=91.94  E-value=0.16  Score=45.54  Aligned_cols=39  Identities=8%  Similarity=-0.073  Sum_probs=32.4

Q ss_pred             CccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCC
Q 044162          156 RPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDC  194 (369)
Q Consensus       156 RPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~  194 (369)
                      .|...+.|+++. +.+.++|.|.-+...+..+++.++.++
T Consensus        24 ~~~~~~~l~~l~~~g~~~~i~TGr~~~~~~~~~~~l~~~~   63 (227)
T 1l6r_A           24 STKAIESIRSAEKKGLTVSLLSGNVIPVVYALKIFLGING   63 (227)
T ss_dssp             CHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTCCS
T ss_pred             CHHHHHHHHHHHHCCCEEEEECCCCcHHHHHHHHHhCCCC
Confidence            467788888886 568999999999999999998887654

>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural genomics, protein structure initiative; 2.90A {Lactobacillus brevis} SCOP: c.108.1.0

Probab=91.82  E-value=0.24  Score=44.90  Aligned_cols=37  Identities=14%  Similarity=0.107  Sum_probs=26.9

Q ss_pred             ccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCC
Q 044162          157 PFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPD  193 (369)
Q Consensus       157 Pgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~  193 (369)
                      |...+.|+++. +...+++.|.-+..-+..+++.++..
T Consensus        25 ~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~   62 (279)
T 3mpo_A           25 QATIDAVQAAKAQGIKVVLCTGRPLTGVQPYLDAMDID   62 (279)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC
Confidence            44556666664 66788888888888888888888765

>1xvi_A MPGP, YEDP, putative mannosyl-3-phosphoglycerate phosphatase; hypothetical protein, conserved protein, phophatase-like domain; HET: 1PE PG4 PGE; 2.26A {Escherichia coli K12} SCOP: c.108.1.10

Probab=91.70  E-value=0.32  Score=44.70  Aligned_cols=37  Identities=11%  Similarity=0.049  Sum_probs=28.1

Q ss_pred             cHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCC
Q 044162          158 FVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDC  194 (369)
Q Consensus       158 gl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~  194 (369)
                      ...+.|+++. +...++|-|.-+...+..+++.++.++
T Consensus        30 ~~~~~l~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~   67 (275)
T 1xvi_A           30 PAAPWLTRLREANVPVILCSSKTSAEMLYLQKTLGLQG   67 (275)
T ss_dssp             TTHHHHHHHHHTTCCEEEECSSCHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCCC
Confidence            3466777775 568899999888888888888876653

>2g80_A Protein UTR4; YEL038W, UTR4 protein (unknown transcript 4 protein), struct genomics, PSI, protein structure initiative; 2.28A {Saccharomyces cerevisiae} SCOP: c.108.1.22

Probab=91.70  E-value=0.046  Score=50.32  Aligned_cols=87  Identities=7%  Similarity=0.061  Sum_probs=60.5

Q ss_pred             EEeCccHHHHHHHHhcCccEEEecCCcHHHHHHHHHHhC-----------CCCCcccceEEeeccccC-----ccccccc
Q 044162          153 VKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLD-----------PDCKYFNSRIITREDFKQ-----KERKYLD  216 (369)
Q Consensus       153 vklRPgl~eFL~~ls~~yEi~I~T~g~~~YA~~i~~~lD-----------p~~~~f~~Ri~srd~~~~-----~~~KdL~  216 (369)
                      +.+.||+.++|+.   .|.+.|.|++++..++.+++...           -. .+|. .++...-++.     .+.+-++
T Consensus       124 ~~~~pgv~e~L~~---g~~l~i~Tn~~~~~~~~~l~~~~~g~~~~~~~l~l~-~~~~-~~f~~~~~g~KP~p~~~~~a~~  198 (253)
T 2g80_A          124 APVYADAIDFIKR---KKRVFIYSSGSVKAQKLLFGYVQDPNAPAHDSLDLN-SYID-GYFDINTSGKKTETQSYANILR  198 (253)
T ss_dssp             BCCCHHHHHHHHH---CSCEEEECSSCHHHHHHHHHSBCCTTCTTSCCBCCG-GGCC-EEECHHHHCCTTCHHHHHHHHH
T ss_pred             CCCCCCHHHHHHc---CCEEEEEeCCCHHHHHHHHHhhcccccccccccchH-hhcc-eEEeeeccCCCCCHHHHHHHHH
Confidence            5678999999999   89999999999999999998762           22 2353 2342211011     1455567


Q ss_pred             ccCCCCCcEEEEeCCccccccCCCceEE
Q 044162          217 LVLGQENSIVIVDDTESVWGGRVENLIT  244 (369)
Q Consensus       217 ~l~~~~~~vvIvDD~~~~w~~~~~N~I~  244 (369)
                      +++.+++.+|+|+|++.-.......|+.
T Consensus       199 ~lg~~p~~~l~vgDs~~di~aA~~aG~~  226 (253)
T 2g80_A          199 DIGAKASEVLFLSDNPLELDAAAGVGIA  226 (253)
T ss_dssp             HHTCCGGGEEEEESCHHHHHHHHTTTCE
T ss_pred             HcCCCcccEEEEcCCHHHHHHHHHcCCE
Confidence            7888899999999998555333344544

>3dnp_A Stress response protein YHAX; structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, unknown function; HET: MSE; 1.85A {Bacillus subtilis} SCOP: c.108.1.0

Probab=91.66  E-value=0.27  Score=44.86  Aligned_cols=67  Identities=9%  Similarity=-0.084  Sum_probs=40.7

Q ss_pred             CCcHHHHHHHHHHhhhcCceEEecc-----cCCCCCh---hHHHHHHhcCCEEEe-----c-cC-----CCceEEEecCC
Q 044162          300 GRDVRSCLAKIRSRILMGCTILFGD-----DDFEELP---LTWSRAEEMGAICTL-----V-TD-----ASVTHVVSSNT  360 (369)
Q Consensus       300 ~~DVr~il~~~r~~VL~g~~ivFSg-----~~p~~~p---~lw~la~~~GA~v~~-----~-i~-----~~vTHvVa~~~  360 (369)
                      ...+..++..+ .....++.+++|+     +.|.+.+   .+..+++.+|.....     | .+     ..+-+-||..+
T Consensus       167 ~~~~~~~~~~l-~~~~~~~~~~~s~~~~~ei~~~~~~K~~~l~~l~~~lgi~~~~~i~~GD~~NDi~m~~~ag~~vam~n  245 (290)
T 3dnp_A          167 HDIQHDITETI-TKAFPAVDVIRVNDEKLNIVPKGVSKEAGLALVASELGLSMDDVVAIGHQYDDLPMIELAGLGVAMGN  245 (290)
T ss_dssp             GGGHHHHHHHH-HHHCTTEEEEEEETTEEEEEETTCCHHHHHHHHHHHTTCCGGGEEEEECSGGGHHHHHHSSEEEECTT
T ss_pred             HHHHHHHHHHH-HhhCCcEEEEEeCCCeEEEEECCCCHHHHHHHHHHHcCCCHHHEEEECCchhhHHHHHhcCCEEEecC
Confidence            34566666666 4566788888875     3344322   788899999973221     1 11     13556777777


Q ss_pred             Ccccccc
Q 044162          361 QSETFEW  367 (369)
Q Consensus       361 gT~K~~~  367 (369)
                      +++.++.
T Consensus       246 a~~~~k~  252 (290)
T 3dnp_A          246 AVPEIKR  252 (290)
T ss_dssp             SCHHHHH
T ss_pred             CcHHHHH
Confidence            7666543

>1xpj_A Hypothetical protein; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics, UN function; HET: TLA; 2.30A {Vibrio cholerae} SCOP: c.108.1.18

Probab=91.59  E-value=0.079  Score=43.38  Aligned_cols=40  Identities=28%  Similarity=0.112  Sum_probs=26.2

Q ss_pred             eCccHHHHHHHHh-cCccEEEecCCcHHH------------HHHHHHHhCCCC
Q 044162          155 LRPFVRSFLEEAS-RLFEISVCTLGNREY------------ATRAVKLLDPDC  194 (369)
Q Consensus       155 lRPgl~eFL~~ls-~~yEi~I~T~g~~~Y------------A~~i~~~lDp~~  194 (369)
                      +.|+..+.|+.+. +.+.++|.|.-....            +..+++.+...+
T Consensus        25 ~~~~~~~~l~~l~~~Gi~~~iaTGR~~~~~nG~~~~~~~~~~~~i~~~~~~~~   77 (126)
T 1xpj_A           25 PRLDVIEQLREYHQLGFEIVISTARNMRTYEGNVGKINIHTLPIITEWLDKHQ   77 (126)
T ss_dssp             BCHHHHHHHHHHHHTTCEEEEEECTTTTTTTTCHHHHHHHTHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHhCCCeEEEEeCCChhhccccccccCHHHHHHHHHHHHHcC
Confidence            3577888888875 678888888655322            456666655443

>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase, enzyme function initiative, EFI, structural genomics; 1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A

Probab=91.57  E-value=0.28  Score=44.48  Aligned_cols=36  Identities=8%  Similarity=-0.125  Sum_probs=25.9

Q ss_pred             ccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCC
Q 044162          157 PFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDP  192 (369)
Q Consensus       157 Pgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp  192 (369)
                      |...+.|+++. +...++|.|.-+..-+..+++.++.
T Consensus        25 ~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~   61 (279)
T 4dw8_A           25 SRNRETLIRIQEQGIRLVLASGRPTYGIVPLANELRM   61 (279)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTTG
T ss_pred             HHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHhCC
Confidence            44556666664 6678888888777778888887764

>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}

Probab=91.47  E-value=0.038  Score=51.10  Aligned_cols=56  Identities=13%  Similarity=-0.017  Sum_probs=40.2

Q ss_pred             HhhhcCceE-EecccC-C---C--CChhHHHHHHhcCCEEEeccCCC-----ceEEEecCCCccccccc
Q 044162          312 SRILMGCTI-LFGDDD-F---E--ELPLTWSRAEEMGAICTLVTDAS-----VTHVVSSNTQSETFEWA  368 (369)
Q Consensus       312 ~~VL~g~~i-vFSg~~-p---~--~~p~lw~la~~~GA~v~~~i~~~-----vTHvVa~~~gT~K~~~a  368 (369)
                      +++|+||.+ ++||.. |   .  ....+.++.+++||+++.+..+.     +||+||.+ .|.|++.+
T Consensus         3 s~lF~g~~f~v~~~~~~p~~~~~~~~~~L~~li~~~GG~~~~~~~~~t~~~~~~~iI~~~-~t~k~~~~   70 (264)
T 1z56_C            3 SNIFAGLLFYVLSDYVTEDTGIRITRAELEKTIVEHGGKLIYNVILKRHSIGDVRLISCK-TTTECKAL   70 (264)
T ss_dssp             CCCCCTTCCCCSEEEECCCCCSSSSCCCTHHHHHHHHTTSCCCSSCCCCCSSCCEEEECS-CCGGGGGG
T ss_pred             cccCCCcEEEEEcCCCCccccccCCHHHHHHHHHHcCCEEeecCCCCccCccceEEEecC-CcHHHHHH
Confidence            578999999 557754 3   1  23389999999999987655443     47777765 58887654

>3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism, detoxification, magnesium, metal-binding, peroxisome; HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P* 1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A* 4hai_A* 1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A*

Probab=91.47  E-value=0.14  Score=50.04  Aligned_cols=79  Identities=15%  Similarity=0.099  Sum_probs=58.6

Q ss_pred             EEeCccHHHHHHHHhc-CccEEEecCC------cHHHHHHHHHHhCCCCCcccceEEeeccccC------cccccccccC
Q 044162          153 VKLRPFVRSFLEEASR-LFEISVCTLG------NREYATRAVKLLDPDCKYFNSRIITREDFKQ------KERKYLDLVL  219 (369)
Q Consensus       153 vklRPgl~eFL~~ls~-~yEi~I~T~g------~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~------~~~KdL~~l~  219 (369)
                      +.+.||+.++|+.+.+ .|.++|.|++      .+......+.-|+   .+|. .+++.++...      .+.+-++.++
T Consensus        99 ~~~~~~~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~~~~~~~~~~l~---~~fd-~i~~~~~~~~~KP~p~~~~~~~~~lg  174 (555)
T 3i28_A           99 RKINRPMLQAALMLRKKGFTTAILTNTWLDDRAERDGLAQLMCELK---MHFD-FLIESCQVGMVKPEPQIYKFLLDTLK  174 (555)
T ss_dssp             CEECHHHHHHHHHHHHTTCEEEEEECCCCCCSTTHHHHHHHHHHHH---TTSS-EEEEHHHHTCCTTCHHHHHHHHHHHT
T ss_pred             cCcChhHHHHHHHHHHCCCEEEEEeCCCccccchhhHHHHHhhhhh---hhee-EEEeccccCCCCCCHHHHHHHHHHcC
Confidence            5788999999999985 5999999999      6666665554444   2674 4666666543      2456677788


Q ss_pred             CCCCcEEEEeCCcccc
Q 044162          220 GQENSIVIVDDTESVW  235 (369)
Q Consensus       220 ~~~~~vvIvDD~~~~w  235 (369)
                      .+.+.+++|||+..-.
T Consensus       175 ~~p~~~~~v~D~~~di  190 (555)
T 3i28_A          175 ASPSEVVFLDDIGANL  190 (555)
T ss_dssp             CCGGGEEEEESCHHHH
T ss_pred             CChhHEEEECCcHHHH
Confidence            8999999999997543

>4gib_A Beta-phosphoglucomutase; rossmann fold, HAD-like, structural genomics, center for structural genomics of infectious DISE csgid, isomerase; 2.27A {Clostridium difficile}

Probab=91.45  E-value=0.1  Score=46.93  Aligned_cols=87  Identities=11%  Similarity=0.069  Sum_probs=61.6

Q ss_pred             EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCcE
Q 044162          153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENSI  225 (369)
Q Consensus       153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~v  225 (369)
                      ..+.||+.++|+.+. ..+.+.+-|+  ...+..+++.++-. .+|. .+++.++....      +.+-++.++.+++.+
T Consensus       115 ~~~~p~~~~ll~~Lk~~g~~i~i~~~--~~~~~~~L~~~gl~-~~Fd-~i~~~~~~~~~KP~p~~~~~a~~~lg~~p~e~  190 (250)
T 4gib_A          115 NDILPGIESLLIDVKSNNIKIGLSSA--SKNAINVLNHLGIS-DKFD-FIADAGKCKNNKPHPEIFLMSAKGLNVNPQNC  190 (250)
T ss_dssp             GGSCTTHHHHHHHHHHTTCEEEECCS--CTTHHHHHHHHTCG-GGCS-EECCGGGCCSCTTSSHHHHHHHHHHTCCGGGE
T ss_pred             cccchhHHHHHHHHHhcccccccccc--cchhhhHhhhcccc-cccc-eeecccccCCCCCcHHHHHHHHHHhCCChHHe
Confidence            346799999999997 5566666554  35678889988877 4784 57767765531      456677788899999


Q ss_pred             EEEeCCccccccCCCceE
Q 044162          226 VIVDDTESVWGGRVENLI  243 (369)
Q Consensus       226 vIvDD~~~~w~~~~~N~I  243 (369)
                      |+|+|++.-.......|+
T Consensus       191 l~VGDs~~Di~aA~~aG~  208 (250)
T 4gib_A          191 IGIEDASAGIDAINSANM  208 (250)
T ss_dssp             EEEESSHHHHHHHHHTTC
T ss_pred             EEECCCHHHHHHHHHcCC
Confidence            999999855443334444

>3qgm_A P-nitrophenyl phosphatase (PHO2); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 2.00A {Archaeoglobus fulgidus} SCOP: c.108.1.0

Probab=91.36  E-value=0.32  Score=43.85  Aligned_cols=16  Identities=25%  Similarity=0.326  Sum_probs=12.9

Q ss_pred             ceEEEEeCCCceeeec
Q 044162           93 KLHLVLDLDHTLLHSR  108 (369)
Q Consensus        93 Kl~LVLDLD~TLIhs~  108 (369)
                      ...+++||||||+++.
T Consensus         8 ~kli~~DlDGTLl~~~   23 (268)
T 3qgm_A            8 KKGYIIDIDGVIGKSV   23 (268)
T ss_dssp             CSEEEEECBTTTEETT
T ss_pred             CCEEEEcCcCcEECCC
Confidence            3568999999999843

>3l5k_A Protein GS1, haloacid dehalogenase-like hydrolase domain- containing protein 1A; HDHD1A, haloacid dehalogenase-like hydrolase domain containing 1A; 2.00A {Homo sapiens}

Probab=91.34  E-value=0.084  Score=46.88  Aligned_cols=89  Identities=7%  Similarity=0.027  Sum_probs=60.0

Q ss_pred             EEeCccHHHHHHHHhc-CccEEEecCCcHHHHHHHHHH-hCCCCCcccceEEeec--cccCc------ccccccccCCCC
Q 044162          153 VKLRPFVRSFLEEASR-LFEISVCTLGNREYATRAVKL-LDPDCKYFNSRIITRE--DFKQK------ERKYLDLVLGQE  222 (369)
Q Consensus       153 vklRPgl~eFL~~ls~-~yEi~I~T~g~~~YA~~i~~~-lDp~~~~f~~Ri~srd--~~~~~------~~KdL~~l~~~~  222 (369)
                      +...||+.++|+.+.+ .+.++|.|++.+.++...+.. ++-. .+|. .+++.+  +....      +.+-++.++.+.
T Consensus       111 ~~~~~~~~~~l~~l~~~g~~~~i~sn~~~~~~~~~l~~~~~l~-~~f~-~~~~~~~~~~~~~Kp~~~~~~~~~~~lgi~~  188 (250)
T 3l5k_A          111 AALMPGAEKLIIHLRKHGIPFALATSSRSASFDMKTSRHKEFF-SLFS-HIVLGDDPEVQHGKPDPDIFLACAKRFSPPP  188 (250)
T ss_dssp             CCBCTTHHHHHHHHHHTTCCEEEECSCCHHHHHHHTTTCHHHH-TTSS-CEECTTCTTCCSCTTSTHHHHHHHHTSSSCC
T ss_pred             CCCCCCHHHHHHHHHhCCCcEEEEeCCCHHHHHHHHHhccCHH-hhee-eEEecchhhccCCCCChHHHHHHHHHcCCCC
Confidence            5689999999999985 599999999998887765532 2222 3564 466555  33321      234455677666


Q ss_pred             --CcEEEEeCCccccccCCCceE
Q 044162          223 --NSIVIVDDTESVWGGRVENLI  243 (369)
Q Consensus       223 --~~vvIvDD~~~~w~~~~~N~I  243 (369)
                        +.++.|+|+..-.......|+
T Consensus       189 ~~~~~i~iGD~~~Di~~a~~aG~  211 (250)
T 3l5k_A          189 AMEKCLVFEDAPNGVEAALAAGM  211 (250)
T ss_dssp             CGGGEEEEESSHHHHHHHHHTTC
T ss_pred             CcceEEEEeCCHHHHHHHHHcCC
Confidence              999999999855543334453

>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: EPE; 2.39A {Klebsiella pneumoniae subsp}

Probab=91.24  E-value=0.21  Score=45.90  Aligned_cols=19  Identities=32%  Similarity=0.226  Sum_probs=13.8

Q ss_pred             cCCceEEEEeCCCceeeec
Q 044162           90 RMRKLHLVLDLDHTLLHSR  108 (369)
Q Consensus        90 ~~~Kl~LVLDLD~TLIhs~  108 (369)
                      ..+...+++||||||+++.
T Consensus        18 ~~~~kli~~DlDGTLl~~~   36 (285)
T 3pgv_A           18 QGMYQVVASDLDGTLLSPD   36 (285)
T ss_dssp             ---CCEEEEECCCCCSCTT
T ss_pred             cCcceEEEEeCcCCCCCCC
Confidence            3455788999999999864

>3kd3_A Phosphoserine phosphohydrolase-like protein; csgid, niaid, S genomics, national institute of allergy and infectious DISE (niaid); 1.70A {Francisella tularensis subsp}

Probab=91.23  E-value=0.27  Score=41.80  Aligned_cols=83  Identities=13%  Similarity=0.115  Sum_probs=57.5

Q ss_pred             EeCccHHHHHHHHhc-CccEEEecCCcHHHHHHHHHHhCCC-CCcccceEEe-eccc----c------Ccccccccc-cC
Q 044162          154 KLRPFVRSFLEEASR-LFEISVCTLGNREYATRAVKLLDPD-CKYFNSRIIT-REDF----K------QKERKYLDL-VL  219 (369)
Q Consensus       154 klRPgl~eFL~~ls~-~yEi~I~T~g~~~YA~~i~~~lDp~-~~~f~~Ri~s-rd~~----~------~~~~KdL~~-l~  219 (369)
                      .++||+.++|+.+.+ .+.++|.|++...++..+++.++-. ..+|...+.. .+..    .      ....+-+.. ++
T Consensus        82 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  161 (219)
T 3kd3_A           82 LLTDGIKELVQDLKNKGFEIWIFSGGLSESIQPFADYLNIPRENIFAVETIWNSDGSFKELDNSNGACDSKLSAFDKAKG  161 (219)
T ss_dssp             TBCTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHHTCCGGGEEEEEEEECTTSBEEEEECTTSTTTCHHHHHHHHGG
T ss_pred             cCChhHHHHHHHHHHCCCeEEEEcCCcHHHHHHHHHHcCCCcccEEEeeeeecCCCceeccCCCCCCcccHHHHHHHHhC
Confidence            378999999999984 6999999999999999999998764 2355433332 2211    0      012233333 36


Q ss_pred             CCCCcEEEEeCCccccc
Q 044162          220 GQENSIVIVDDTESVWG  236 (369)
Q Consensus       220 ~~~~~vvIvDD~~~~w~  236 (369)
                      .+.+.++.|.|+..-..
T Consensus       162 ~~~~~~~~vGD~~~Di~  178 (219)
T 3kd3_A          162 LIDGEVIAIGDGYTDYQ  178 (219)
T ss_dssp             GCCSEEEEEESSHHHHH
T ss_pred             CCCCCEEEEECCHhHHH
Confidence            67889999999985443

>2fi1_A Hydrolase, haloacid dehalogenase-like family; structural genomics, haloacid dehalogenase-like F PSI, protein structure initiative; 1.40A {Streptococcus pneumoniae} SCOP: c.108.1.3

Probab=91.23  E-value=0.33  Score=40.73  Aligned_cols=85  Identities=13%  Similarity=0.015  Sum_probs=57.7

Q ss_pred             eCccHHHHHHHHhc-CccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCcEEE
Q 044162          155 LRPFVRSFLEEASR-LFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENSIVI  227 (369)
Q Consensus       155 lRPgl~eFL~~ls~-~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~vvI  227 (369)
                      ..|++.++|+.+.+ .+.++|.|++. .++..+++.++.. .+|. .+++.++....      +.+-++.++.+  .++.
T Consensus        83 ~~~~~~~~l~~l~~~g~~~~i~t~~~-~~~~~~l~~~~~~-~~f~-~~~~~~~~~~~kp~~~~~~~~~~~~~~~--~~~~  157 (190)
T 2fi1_A           83 LFEGVSDLLEDISNQGGRHFLVSHRN-DQVLEILEKTSIA-AYFT-EVVTSSSGFKRKPNPESMLYLREKYQIS--SGLV  157 (190)
T ss_dssp             BCTTHHHHHHHHHHTTCEEEEECSSC-THHHHHHHHTTCG-GGEE-EEECGGGCCCCTTSCHHHHHHHHHTTCS--SEEE
T ss_pred             cCcCHHHHHHHHHHCCCcEEEEECCc-HHHHHHHHHcCCH-hhee-eeeeccccCCCCCCHHHHHHHHHHcCCC--eEEE
Confidence            78999999999985 59999999886 4788888888765 3664 46655554321      12223445555  8999


Q ss_pred             EeCCccccccCCCceEE
Q 044162          228 VDDTESVWGGRVENLIT  244 (369)
Q Consensus       228 vDD~~~~w~~~~~N~I~  244 (369)
                      |+|++.-.......++.
T Consensus       158 iGD~~~Di~~a~~aG~~  174 (190)
T 2fi1_A          158 IGDRPIDIEAGQAAGLD  174 (190)
T ss_dssp             EESSHHHHHHHHHTTCE
T ss_pred             EcCCHHHHHHHHHcCCe
Confidence            99998555432333443

>3bwv_A Putative 5'(3')-deoxyribonucleotidase; NP_764060.1, deoxyribonucleotidase-like protein; HET: MSE; 1.55A {Staphylococcus epidermidis}

Probab=90.50  E-value=0.42  Score=40.53  Aligned_cols=79  Identities=8%  Similarity=0.056  Sum_probs=49.9

Q ss_pred             EEeCccHHHHHHHHhcCccEEEecCC---cHHHH--HHHHHH-hCCCCCcccceEEeeccccCcccccccccCCCCCcEE
Q 044162          153 VKLRPFVRSFLEEASRLFEISVCTLG---NREYA--TRAVKL-LDPDCKYFNSRIITREDFKQKERKYLDLVLGQENSIV  226 (369)
Q Consensus       153 vklRPgl~eFL~~ls~~yEi~I~T~g---~~~YA--~~i~~~-lDp~~~~f~~Ri~srd~~~~~~~KdL~~l~~~~~~vv  226 (369)
                      +.+.||+.++|+.+.+.+.+.|-|++   .+...  ...+.. ++.. .+| +.+++.++.         .+    +.++
T Consensus        68 ~~~~pg~~e~L~~L~~~~~~~i~T~~~~~~~~~~~~~~~l~~~f~~~-~~~-~~i~~~~~~---------~l----~~~l  132 (180)
T 3bwv_A           68 LDVMPHAQEVVKQLNEHYDIYIATAAMDVPTSFHDKYEWLLEYFPFL-DPQ-HFVFCGRKN---------II----LADY  132 (180)
T ss_dssp             CCBCTTHHHHHHHHTTTSEEEEEECC--CCSHHHHHHHHHHHHCTTS-CGG-GEEECSCGG---------GB----CCSE
T ss_pred             CCCCcCHHHHHHHHHhcCCEEEEeCCCCcchHHHHHHHHHHHHcCCC-Ccc-cEEEeCCcC---------ee----cccE
Confidence            56789999999999877999999998   32222  333433 3322 233 567765541         12    5579


Q ss_pred             EEeCCccccccCCCceEEeC
Q 044162          227 IVDDTESVWGGRVENLITVG  246 (369)
Q Consensus       227 IvDD~~~~w~~~~~N~I~I~  246 (369)
                      +|||++.........+|.+.
T Consensus       133 ~ieDs~~~i~~aaG~~i~~~  152 (180)
T 3bwv_A          133 LIDDNPKQLEIFEGKSIMFT  152 (180)
T ss_dssp             EEESCHHHHHHCSSEEEEEC
T ss_pred             EecCCcchHHHhCCCeEEeC
Confidence            99999975433222455553

>3qbz_A DDK kinase regulatory subunit DBF4; FHA domain,RAD53, replication checkpoint, cell cycle; 2.69A {Saccharomyces cerevisiae}

Probab=90.47  E-value=0.36  Score=41.52  Aligned_cols=53  Identities=25%  Similarity=0.246  Sum_probs=39.5

Q ss_pred             Hhhhc-CceEEecccCCCCCh------------hHHHHHHhcCCEEEeccCCCceEEEecCCCccc
Q 044162          312 SRILM-GCTILFGDDDFEELP------------LTWSRAEEMGAICTLVTDASVTHVVSSNTQSET  364 (369)
Q Consensus       312 ~~VL~-g~~ivFSg~~p~~~p------------~lw~la~~~GA~v~~~i~~~vTHvVa~~~gT~K  364 (369)
                      +++|+ ++.|+|-..-+....            .+.+-...+||+++.-++.+|||||..++-...
T Consensus        56 Rkifk~~~vfYFDt~~~~~~~~~~k~kl~K~~~llkr~f~~LGA~I~~FFd~~VTiVIT~R~i~~~  121 (160)
T 3qbz_A           56 KKIMKRDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITRRSVENI  121 (160)
T ss_dssp             HHHHHHHCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHTTTCEEESSCCTTCCEEEESSCSSCG
T ss_pred             HHhCccCcEEEecCCChhhhhHHHHHHHHHHHHHHHHHHHHcCCEeeeeccCCeEEEEecCcCccc
Confidence            46887 899999876654211            122344699999999999999999999875544

>1swv_A Phosphonoacetaldehyde hydrolase; HAD enzyme superfamily, phosphonotase, metal binding; 2.30A {Bacillus cereus} SCOP: c.108.1.3 PDB: 1sww_A 2iof_A* 2ioh_A 1rql_A 1rqn_A 2iof_K* 1rdf_A 1fez_A

Probab=90.45  E-value=0.21  Score=44.57  Aligned_cols=83  Identities=18%  Similarity=0.014  Sum_probs=59.4

Q ss_pred             EEeCccHHHHHHHHhc-CccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCC-Cc
Q 044162          153 VKLRPFVRSFLEEASR-LFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQE-NS  224 (369)
Q Consensus       153 vklRPgl~eFL~~ls~-~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~-~~  224 (369)
                      ....||+.++|+.+.+ .+.+.|.|++...++..+++.++..+ +|.+.+++.++....      +.+-++.++.+. +.
T Consensus       102 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~kp~~~~~~~~~~~lgi~~~~~  180 (267)
T 1swv_A          102 ASPINGVKEVIASLRERGIKIGSTTGYTREMMDIVAKEAALQG-YKPDFLVTPDDVPAGRPYPWMCYKNAMELGVYPMNH  180 (267)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEBCSSCHHHHHHHHHHHHHTT-CCCSCCBCGGGSSCCTTSSHHHHHHHHHHTCCSGGG
T ss_pred             cccCccHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHcCCcc-cChHheecCCccCCCCCCHHHHHHHHHHhCCCCCcC
Confidence            4567999999999974 59999999999999999998876543 432345555544321      222345567777 89


Q ss_pred             EEEEeCCccccc
Q 044162          225 IVIVDDTESVWG  236 (369)
Q Consensus       225 vvIvDD~~~~w~  236 (369)
                      ++.|.|+..-..
T Consensus       181 ~i~iGD~~nDi~  192 (267)
T 1swv_A          181 MIKVGDTVSDMK  192 (267)
T ss_dssp             EEEEESSHHHHH
T ss_pred             EEEEeCCHHHHH
Confidence            999999985443

>1nf2_A Phosphatase; structural proteomics, HAD NEW fold, structural genomics, BSGC structure funded by NIH structure initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.108.1.10

Probab=90.34  E-value=0.46  Score=43.22  Aligned_cols=38  Identities=13%  Similarity=-0.120  Sum_probs=26.1

Q ss_pred             ccHHHHHHHHhcCccEEEecCCcHHHHHHHHHHhCCCC
Q 044162          157 PFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDC  194 (369)
Q Consensus       157 Pgl~eFL~~ls~~yEi~I~T~g~~~YA~~i~~~lDp~~  194 (369)
                      |...+.|++..+...++|.|.-+..-+..+++.++.++
T Consensus        22 ~~~~~al~~~~~Gi~v~iaTGR~~~~~~~~~~~l~~~~   59 (268)
T 1nf2_A           22 EKDRRNIEKLSRKCYVVFASGRMLVSTLNVEKKYFKRT   59 (268)
T ss_dssp             HHHHHHHHHHTTTSEEEEECSSCHHHHHHHHHHHSSSC
T ss_pred             HHHHHHHHHHhCCCEEEEECCCChHHHHHHHHHhCCCC
Confidence            33455565533567788888888877888888877654

>1nrw_A Hypothetical protein, haloacid dehalogenase-like hydrolase; structural genomics, PSI, protein structure initiative; 1.70A {Bacillus subtilis} SCOP: c.108.1.10

Probab=90.18  E-value=0.44  Score=43.81  Aligned_cols=37  Identities=16%  Similarity=-0.042  Sum_probs=24.6

Q ss_pred             ccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCC
Q 044162          157 PFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPD  193 (369)
Q Consensus       157 Pgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~  193 (369)
                      |...+.|+++. +...+++.|.-+...+..+++.++.+
T Consensus        24 ~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~   61 (288)
T 1nrw_A           24 LENENALRQAQRDGIEVVVSTGRAHFDVMSIFEPLGIK   61 (288)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHGGGTCC
T ss_pred             HHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCC
Confidence            44455566654 46777788877777777777766544

>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics, unknown function, HAD superfamily hydro PSI-2; 1.55A {Streptococcus agalactiae serogroup V} SCOP: c.108.1.14 PDB: 1ys9_A 1wvi_A 1ydf_A

Probab=90.06  E-value=0.23  Score=45.02  Aligned_cols=16  Identities=25%  Similarity=0.418  Sum_probs=13.2

Q ss_pred             ceEEEEeCCCceeeec
Q 044162           93 KLHLVLDLDHTLLHSR  108 (369)
Q Consensus        93 Kl~LVLDLD~TLIhs~  108 (369)
                      ...+++||||||+++.
T Consensus         5 ~kli~~DlDGTLl~~~   20 (264)
T 3epr_A            5 YKGYLIDLDGTIYKGK   20 (264)
T ss_dssp             CCEEEECCBTTTEETT
T ss_pred             CCEEEEeCCCceEeCC
Confidence            3578999999999864

>3dao_A Putative phosphatse; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE 1PE CIT; 1.80A {Eubacterium rectale}

Probab=89.71  E-value=0.29  Score=44.92  Aligned_cols=65  Identities=2%  Similarity=-0.104  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHhhhcCceEEeccc-----CCCCCh---hHHHHHHhcCCEEEe-----c-cC-----CCceEEEecCCCcc
Q 044162          303 VRSCLAKIRSRILMGCTILFGDD-----DFEELP---LTWSRAEEMGAICTL-----V-TD-----ASVTHVVSSNTQSE  363 (369)
Q Consensus       303 Vr~il~~~r~~VL~g~~ivFSg~-----~p~~~p---~lw~la~~~GA~v~~-----~-i~-----~~vTHvVa~~~gT~  363 (369)
                      ...+...+++..-..+.+++|+.     .|...+   .+..+++.+|.....     | .+     ..+-+-||..++++
T Consensus       178 ~~~~~~~l~~~~~~~~~~~~s~~~~~ei~~~~~~K~~~l~~l~~~lgi~~~e~ia~GD~~NDi~ml~~ag~~vam~na~~  257 (283)
T 3dao_A          178 EELCTPVFIPAWNKKAHLAAAGKEWVDCNAKGVSKWTALSYLIDRFDLLPDEVCCFGDNLNDIEMLQNAGISYAVSNARQ  257 (283)
T ss_dssp             HHHHTTTHHHHHTTTEEEEEETTTEEEEEETTCCHHHHHHHHHHHTTCCGGGEEEEECSGGGHHHHHHSSEEEEETTSCH
T ss_pred             HHHHHHHHHHHhcCCEEEEEecCceEEEeeCCCcHHHHHHHHHHHhCCCHHHEEEECCCHHHHHHHHhCCCEEEcCCCCH
Confidence            33344444433334466777763     233322   788889999964211     1 11     12457777777776


Q ss_pred             cccc
Q 044162          364 TFEW  367 (369)
Q Consensus       364 K~~~  367 (369)
                      .++.
T Consensus       258 ~~k~  261 (283)
T 3dao_A          258 EVIA  261 (283)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6553

>2zos_A MPGP, mannosyl-3-phosphoglycerate phosphatase; haloacid dehalogenase like hydrolase, mannosylglycerate, cytoplasm, hydrolase, magnesium; 1.70A {Pyrococcus horikoshii} PDB: 1wzc_A

Probab=89.67  E-value=0.53  Score=42.44  Aligned_cols=35  Identities=23%  Similarity=0.198  Sum_probs=26.7

Q ss_pred             HHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCC
Q 044162          159 VRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPD  193 (369)
Q Consensus       159 l~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~  193 (369)
                      ..+.|+++. +...++|.|.-+...+..+++.++..
T Consensus        22 ~~~~l~~l~~~g~~~~i~Tgr~~~~~~~~~~~~~~~   57 (249)
T 2zos_A           22 AKPIIEELKDMGFEIIFNSSKTRAEQEYYRKELEVE   57 (249)
T ss_dssp             GHHHHHHHHHTTEEEEEBCSSCHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCC
Confidence            456666664 67888888888888888888888765

>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC, protein structure initia YORK SGX research center for structural genomics; 1.60A {Bacillus subtilis} SCOP: c.108.1.0

Probab=89.33  E-value=0.35  Score=43.56  Aligned_cols=15  Identities=27%  Similarity=0.399  Sum_probs=12.7

Q ss_pred             ceEEEEeCCCceeee
Q 044162           93 KLHLVLDLDHTLLHS  107 (369)
Q Consensus        93 Kl~LVLDLD~TLIhs  107 (369)
                      ...+++||||||+++
T Consensus         6 ~kli~~DlDGTLl~~   20 (266)
T 3pdw_A            6 YKGYLIDLDGTMYNG   20 (266)
T ss_dssp             CSEEEEECSSSTTCH
T ss_pred             CCEEEEeCcCceEeC
Confidence            356899999999986

>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein, structural genomics, unknown function; 2.60A {Geobacillus kaustophilus} PDB: 2qyh_A

Probab=89.25  E-value=0.39  Score=43.11  Aligned_cols=15  Identities=33%  Similarity=0.512  Sum_probs=12.9

Q ss_pred             eEEEEeCCCceeeec
Q 044162           94 LHLVLDLDHTLLHSR  108 (369)
Q Consensus        94 l~LVLDLD~TLIhs~  108 (369)
                      ..+++||||||+++.
T Consensus         4 kli~~DlDGTLl~~~   18 (258)
T 2pq0_A            4 KIVFFDIDGTLLDEQ   18 (258)
T ss_dssp             CEEEECTBTTTBCTT
T ss_pred             eEEEEeCCCCCcCCC
Confidence            468999999999875

>3vay_A HAD-superfamily hydrolase; rossmann fold, haloacid dehalogenase; 1.98A {Pseudomonas syringae PV}

Probab=89.15  E-value=0.14  Score=44.45  Aligned_cols=73  Identities=27%  Similarity=0.303  Sum_probs=53.4

Q ss_pred             EEeCccHHHHHHHHhcCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCcEE
Q 044162          153 VKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENSIV  226 (369)
Q Consensus       153 vklRPgl~eFL~~ls~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~vv  226 (369)
                      +...||+.++|+.+.+.+.++|.|++...     ++.++-. .+|. .+++.++....      +.+-++.++.+.+.++
T Consensus       104 ~~~~~~~~~~l~~l~~~~~~~i~t~~~~~-----l~~~~l~-~~f~-~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~  176 (230)
T 3vay_A          104 VQIFPEVQPTLEILAKTFTLGVITNGNAD-----VRRLGLA-DYFA-FALCAEDLGIGKPDPAPFLEALRRAKVDASAAV  176 (230)
T ss_dssp             CCBCTTHHHHHHHHHTTSEEEEEESSCCC-----GGGSTTG-GGCS-EEEEHHHHTCCTTSHHHHHHHHHHHTCCGGGEE
T ss_pred             CccCcCHHHHHHHHHhCCeEEEEECCchh-----hhhcCcH-HHee-eeEEccccCCCCcCHHHHHHHHHHhCCCchheE
Confidence            56789999999999877999999999875     3444443 3574 46665554321      2344556788899999


Q ss_pred             EEeCCc
Q 044162          227 IVDDTE  232 (369)
Q Consensus       227 IvDD~~  232 (369)
                      +|+|+.
T Consensus       177 ~vGD~~  182 (230)
T 3vay_A          177 HVGDHP  182 (230)
T ss_dssp             EEESCT
T ss_pred             EEeCCh
Confidence            999996

>1q92_A 5(3)-deoxyribonucleotidase; alpha-beta rossman fold, hydrolase; HET: DRM; 1.40A {Homo sapiens} SCOP: c.108.1.8 PDB: 1mh9_A* 1q91_A* 1z4m_A* 1z4i_A* 1z4j_A* 1z4l_A* 1z4k_A* 1z4p_X* 1z4q_A* 2jau_A* 2jaw_A* 3u19_A* 3u13_A 4e88_A

Probab=88.84  E-value=0.031  Score=48.70  Aligned_cols=45  Identities=16%  Similarity=0.139  Sum_probs=36.5

Q ss_pred             EEeCccHHHHHHHHhc--CccEEEecCCcHHHHHHHHHHhCCCCCcc
Q 044162          153 VKLRPFVRSFLEEASR--LFEISVCTLGNREYATRAVKLLDPDCKYF  197 (369)
Q Consensus       153 vklRPgl~eFL~~ls~--~yEi~I~T~g~~~YA~~i~~~lDp~~~~f  197 (369)
                      +.+.||+.++|+.+.+  .+.+.|.|++.+.++..+++.++-..++|
T Consensus        74 ~~~~~g~~e~L~~L~~~~g~~~~ivT~~~~~~~~~~l~~~~l~~~~f  120 (197)
T 1q92_A           74 LEPLPGAVEAVKEMASLQNTDVFICTSPIKMFKYCPYEKYAWVEKYF  120 (197)
T ss_dssp             CCBCTTHHHHHHHHHHSTTEEEEEEECCCSCCSSHHHHHHHHHHHHH
T ss_pred             CCcCcCHHHHHHHHHhcCCCeEEEEeCCccchHHHHHHHhchHHHhc
Confidence            5678999999999986  69999999999988888777665432245

>2wf7_A Beta-PGM, beta-phosphoglucomutase; transition state analogue, haloacid dehalogenase superfamily, isomerase, phosphotransferase; HET: G7P; 1.05A {Lactococcus lactis} PDB: 1o03_A* 1z4n_A* 1z4o_A* 1zol_A 2wf5_A* 2wf6_A* 1o08_A* 2wf8_A* 2wf9_A* 2wfa_A 2whe_A 1lvh_A* 3fm9_A

Probab=88.82  E-value=0.34  Score=41.39  Aligned_cols=89  Identities=9%  Similarity=0.081  Sum_probs=60.6

Q ss_pred             EEeCccHHHHHHHHhc-CccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCcE
Q 044162          153 VKLRPFVRSFLEEASR-LFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENSI  225 (369)
Q Consensus       153 vklRPgl~eFL~~ls~-~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~v  225 (369)
                      ....|++.++|+.+.+ .+.+.|+|++  ..+..+++.++.. .+|. .+++.++....      +.+-++.++.+.+.+
T Consensus        90 ~~~~~~~~~~l~~l~~~g~~~~i~t~~--~~~~~~l~~~~l~-~~f~-~~~~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~  165 (221)
T 2wf7_A           90 ADVYPGILQLLKDLRSNKIKIALASAS--KNGPFLLERMNLT-GYFD-AIADPAEVAASKPAPDIFIAAAHAVGVAPSES  165 (221)
T ss_dssp             GGBCTTHHHHHHHHHHTTCEEEECCCC--TTHHHHHHHTTCG-GGCS-EECCTTTSSSCTTSSHHHHHHHHHTTCCGGGE
T ss_pred             CCCCCCHHHHHHHHHHCCCeEEEEcCc--HHHHHHHHHcChH-HHcc-eEeccccCCCCCCChHHHHHHHHHcCCChhHe
Confidence            3568999999999975 5999999998  5677788877765 3664 35555544321      223345677888999


Q ss_pred             EEEeCCccccccCCCceEEe
Q 044162          226 VIVDDTESVWGGRVENLITV  245 (369)
Q Consensus       226 vIvDD~~~~w~~~~~N~I~I  245 (369)
                      +.|+|+..-.......|+.+
T Consensus       166 i~iGD~~nDi~~a~~aG~~~  185 (221)
T 2wf7_A          166 IGLEDSQAGIQAIKDSGALP  185 (221)
T ss_dssp             EEEESSHHHHHHHHHHTCEE
T ss_pred             EEEeCCHHHHHHHHHCCCEE
Confidence            99999985444333334443

>1vjr_A 4-nitrophenylphosphatase; TM1742, structural genomics, JCSG, protein structure initiative, joint center for structural G hydrolase; 2.40A {Thermotoga maritima} SCOP: c.108.1.14 PDB: 1pw5_A*

Probab=88.58  E-value=0.66  Score=41.70  Aligned_cols=16  Identities=25%  Similarity=0.395  Sum_probs=13.3

Q ss_pred             CceEEEEeCCCceeee
Q 044162           92 RKLHLVLDLDHTLLHS  107 (369)
Q Consensus        92 ~Kl~LVLDLD~TLIhs  107 (369)
                      +...+++||||||+++
T Consensus        16 ~~~~v~~DlDGTLl~~   31 (271)
T 1vjr_A           16 KIELFILDMDGTFYLD   31 (271)
T ss_dssp             GCCEEEECCBTTTEET
T ss_pred             CCCEEEEcCcCcEEeC
Confidence            3456899999999987

>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha sandwich. stucture contains A magnesium ION., PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: c.108.1.10

Probab=88.31  E-value=0.49  Score=43.47  Aligned_cols=36  Identities=17%  Similarity=0.070  Sum_probs=21.1

Q ss_pred             cHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCC
Q 044162          158 FVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPD  193 (369)
Q Consensus       158 gl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~  193 (369)
                      ...+.|+++. +...++|.|.-+...+..+++.++.+
T Consensus        26 ~~~~aL~~l~~~Gi~vviaTGR~~~~~~~~~~~l~l~   62 (282)
T 1rkq_A           26 AVKNAIAAARARGVNVVLTTGRPYAGVHNYLKELHME   62 (282)
T ss_dssp             HHHHHHHHHHHTTCEEEEECSSCGGGTHHHHHHTTCC
T ss_pred             HHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCC
Confidence            3445555554 45666677766666666666666543

>1s2o_A SPP, sucrose-phosphatase; phosphohydrolase, HAD superfamily, cyanobacteria; 1.40A {Synechocystis SP} SCOP: c.108.1.10 PDB: 1tj3_A 1tj4_A* 1tj5_A* 1u2s_A* 1u2t_A* 2b1q_A* 2b1r_A* 2d2v_A*

Probab=88.22  E-value=0.34  Score=43.71  Aligned_cols=33  Identities=15%  Similarity=0.116  Sum_probs=20.6

Q ss_pred             HHHHHHHhcCccEEEecCCcHHHHHHHHHHhCC
Q 044162          160 RSFLEEASRLFEISVCTLGNREYATRAVKLLDP  192 (369)
Q Consensus       160 ~eFL~~ls~~yEi~I~T~g~~~YA~~i~~~lDp  192 (369)
                      .+.|+++.+...++|-|.-+...+..+++.++.
T Consensus        25 ~~~l~~~~~gi~v~iaTGR~~~~~~~~~~~l~l   57 (244)
T 1s2o_A           25 QEYLGDRRGNFYLAYATGRSYHSARELQKQVGL   57 (244)
T ss_dssp             HHHHHTTGGGEEEEEECSSCHHHHHHHHHHHTC
T ss_pred             HHHHHHhcCCCEEEEEcCCCHHHHHHHHHHcCC
Confidence            445555555566777776666667777766543

>2yj3_A Copper-transporting ATPase; hydrolase, P-type ATPase, COPB, heavy metal translocation; 2.20A {Sulfolobus solfataricus} PDB: 2iye_A 2yj6_A* 2yj5_A* 2yj4_A*

Probab=87.86  E-value=0.095  Score=48.16  Aligned_cols=86  Identities=14%  Similarity=0.214  Sum_probs=62.3

Q ss_pred             EEeCccHHHHHHHHhc-CccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCcccccccccCCCCCcEEEEeCC
Q 044162          153 VKLRPFVRSFLEEASR-LFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKYLDLVLGQENSIVIVDDT  231 (369)
Q Consensus       153 vklRPgl~eFL~~ls~-~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~~~KdL~~l~~~~~~vvIvDD~  231 (369)
                      ..+|||+.++|+.+.+ .+.++|.|++.+..+..+++.++-.. +|.. ++ .+    .+.+-++.++...+.+++|.|+
T Consensus       135 ~~~~~g~~~~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~gl~~-~f~~-~~-p~----~k~~~~~~l~~~~~~~~~VGD~  207 (263)
T 2yj3_A          135 DVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNIQE-YYSN-LS-PE----DKVRIIEKLKQNGNKVLMIGDG  207 (263)
Confidence            4689999999999985 59999999999999999999988763 6643 33 21    1234455566677889999998


Q ss_pred             ccccccCCCceEEe
Q 044162          232 ESVWGGRVENLITV  245 (369)
Q Consensus       232 ~~~w~~~~~N~I~I  245 (369)
                      ..-.+.-...++.|
T Consensus       208 ~~D~~aa~~Agv~v  221 (263)
T 2yj3_A          208 VNDAAALALADVSV  221 (263)
Confidence            74443333445544

>1zjj_A Hypothetical protein PH1952; alpha/beta hydrolase fold, HAD superfamily, structural genom riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii}

Probab=87.61  E-value=0.53  Score=42.54  Aligned_cols=14  Identities=21%  Similarity=0.553  Sum_probs=11.9

Q ss_pred             EEEEeCCCceeeec
Q 044162           95 HLVLDLDHTLLHSR  108 (369)
Q Consensus        95 ~LVLDLD~TLIhs~  108 (369)
                      .+++||||||++..
T Consensus         3 ~i~~D~DGtL~~~~   16 (263)
T 1zjj_A            3 AIIFDMDGVLYRGN   16 (263)
T ss_dssp             EEEEECBTTTEETT
T ss_pred             EEEEeCcCceEeCC
Confidence            68999999999753

>2hx1_A Predicted sugar phosphatases of the HAD superfamily; ZP_00311070.1, possible sugar phosphatase, structural genomics; HET: MSE EPE; 2.10A {Cytophaga hutchinsonii}

Probab=87.57  E-value=0.88  Score=41.44  Aligned_cols=37  Identities=11%  Similarity=-0.011  Sum_probs=22.1

Q ss_pred             ccHHHHHHHHh-cCccEEEecC---CcHHHHHHHHHHhCCC
Q 044162          157 PFVRSFLEEAS-RLFEISVCTL---GNREYATRAVKLLDPD  193 (369)
Q Consensus       157 Pgl~eFL~~ls-~~yEi~I~T~---g~~~YA~~i~~~lDp~  193 (369)
                      |+..++|+.+. +...+++.|+   -+.......++.++-.
T Consensus        33 ~~~~~~l~~l~~~g~~~~~~Tn~~~r~~~~~~~~l~~lg~~   73 (284)
T 2hx1_A           33 PGIENTFDYLKAQGQDYYIVTNDASRSPEQLADSYHKLGLF   73 (284)
T ss_dssp             TTHHHHHHHHHHTTCEEEEEECCCSSCHHHHHHHHHHTTCT
T ss_pred             hhHHHHHHHHHHCCCEEEEEeCCCCcCHHHHHHHHHHCCcC
Confidence            66777777765 6677888885   2333344445555443

>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid dehalogenase-like hydrolas structural genomics, joint center for structural genomics; HET: MSE; 2.10A {Clostridium difficile} SCOP: c.108.1.0

Probab=87.05  E-value=0.37  Score=43.33  Aligned_cols=17  Identities=35%  Similarity=0.368  Sum_probs=14.1

Q ss_pred             ceEEEEeCCCceeeecc
Q 044162           93 KLHLVLDLDHTLLHSRL  109 (369)
Q Consensus        93 Kl~LVLDLD~TLIhs~~  109 (369)
                      ...+++||||||+++..
T Consensus         5 ~kli~fDlDGTLl~~~~   21 (274)
T 3fzq_A            5 YKLLILDIDGTLRDEVY   21 (274)
T ss_dssp             CCEEEECSBTTTBBTTT
T ss_pred             ceEEEEECCCCCCCCCC
Confidence            35689999999998764

>2fue_A PMM 1, PMMH-22, phosphomannomutase 1; enzyme-product complex, protein glycosyl carbohydrate-deficient glycoprotein syndrome; HET: MSE M1P; 1.75A {Homo sapiens} SCOP: c.108.1.10 PDB: 2fuc_A*

Probab=86.92  E-value=0.86  Score=41.36  Aligned_cols=17  Identities=29%  Similarity=0.491  Sum_probs=13.5

Q ss_pred             CceEEEEeCCCceeeec
Q 044162           92 RKLHLVLDLDHTLLHSR  108 (369)
Q Consensus        92 ~Kl~LVLDLD~TLIhs~  108 (369)
                      +...+++||||||+++.
T Consensus        12 ~~kli~~DlDGTLl~~~   28 (262)
T 2fue_A           12 ERVLCLFDVDGTLTPAR   28 (262)
T ss_dssp             -CEEEEEESBTTTBSTT
T ss_pred             CeEEEEEeCccCCCCCC
Confidence            45678999999999854

>2b30_A Pvivax hypothetical protein; SGPP, structural genomics, PSI, protein structure initiative; 2.70A {Plasmodium vivax} SCOP: c.108.1.10

Probab=86.70  E-value=1  Score=41.96  Aligned_cols=42  Identities=5%  Similarity=-0.041  Sum_probs=25.9

Q ss_pred             CcHHHHHHHHHHhhhcCceEEeccc-----CCCCCh---hHHHHHHhcCC
Q 044162          301 RDVRSCLAKIRSRILMGCTILFGDD-----DFEELP---LTWSRAEEMGA  342 (369)
Q Consensus       301 ~DVr~il~~~r~~VL~g~~ivFSg~-----~p~~~p---~lw~la~~~GA  342 (369)
                      ..+..+...+++..-.++.++.|+-     .|.+.+   .+..+++.+|.
T Consensus       189 ~~~~~~~~~l~~~~~~~~~~~~s~~~~lei~~~~~~K~~~l~~l~~~~~~  238 (301)
T 2b30_A          189 SESKTVIGNLKQKFKNKLTIFTTYNGHAEVTKLGHDKYTGINYLLKHYNI  238 (301)
T ss_dssp             TTHHHHHHHHHHHSTTTEEEEECTTSCEEEEETTCCHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEeCCcceEecCCCCCcHHHHHHHHHHcCC
Confidence            3455666666554445677777762     243322   77888888885

>3n28_A Phosphoserine phosphatase; HAD family hydrolase, structural genomics, PSI, protein STRU initiative, nysgrc; 2.30A {Vibrio cholerae}

Probab=86.62  E-value=0.52  Score=44.42  Aligned_cols=92  Identities=10%  Similarity=0.002  Sum_probs=64.2

Q ss_pred             EEeCccHHHHHHHHhc-CccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeec---------cccC------ccccccc
Q 044162          153 VKLRPFVRSFLEEASR-LFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITRE---------DFKQ------KERKYLD  216 (369)
Q Consensus       153 vklRPgl~eFL~~ls~-~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd---------~~~~------~~~KdL~  216 (369)
                      +.++||+.++|+.+.+ .+.++|.|++...+++.+++.++-. .+|...+-..+         +...      .+.+-++
T Consensus       177 ~~~~pg~~~~l~~L~~~g~~~~ivS~~~~~~~~~~~~~lgl~-~~~~~~l~~~d~~~tg~~~~~~~~~kpk~~~~~~~~~  255 (335)
T 3n28_A          177 LPLMPELPELVATLHAFGWKVAIASGGFTYFSDYLKEQLSLD-YAQSNTLEIVSGKLTGQVLGEVVSAQTKADILLTLAQ  255 (335)
T ss_dssp             CCCCTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHHTCS-EEEEEEEEEETTEEEEEEESCCCCHHHHHHHHHHHHH
T ss_pred             CCcCcCHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCC-eEEeeeeEeeCCeeeeeecccccChhhhHHHHHHHHH
Confidence            5689999999999985 6999999999999999999999886 36654322111         1111      1222344


Q ss_pred             ccCCCCCcEEEEeCCccccccCCCceEEe
Q 044162          217 LVLGQENSIVIVDDTESVWGGRVENLITV  245 (369)
Q Consensus       217 ~l~~~~~~vvIvDD~~~~w~~~~~N~I~I  245 (369)
                      .++.+.+.++.|.|+..-...-...++.|
T Consensus       256 ~lgi~~~~~v~vGDs~nDi~~a~~aG~~v  284 (335)
T 3n28_A          256 QYDVEIHNTVAVGDGANDLVMMAAAGLGV  284 (335)
T ss_dssp             HHTCCGGGEEEEECSGGGHHHHHHSSEEE
T ss_pred             HcCCChhhEEEEeCCHHHHHHHHHCCCeE
Confidence            56778899999999985554333345544

>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3

Probab=86.01  E-value=0.82  Score=40.78  Aligned_cols=50  Identities=10%  Similarity=-0.045  Sum_probs=37.3

Q ss_pred             HHHhhhcCceEEecccCCCC-ChhHHHHHHhcCCEEEeccCC-----CceEEEecC
Q 044162          310 IRSRILMGCTILFGDDDFEE-LPLTWSRAEEMGAICTLVTDA-----SVTHVVSSN  359 (369)
Q Consensus       310 ~r~~VL~g~~ivFSg~~p~~-~p~lw~la~~~GA~v~~~i~~-----~vTHvVa~~  359 (369)
                      .+..+|+|+.+.|+|-+... ...+..+.+..||+++....+     .+||+|...
T Consensus       113 ~~~~lF~g~~~~~~~~~~~~~~~~l~~li~~~GG~v~~~~~~~~~~~~~~~~vvv~  168 (229)
T 1l0b_A          113 SQEKLFEGLQIYCCEPFTNMPKDELERMLQLCGASVVKELPLLTRDTGAHPIVLVQ  168 (229)
T ss_dssp             HC--CCTTCEEEECSCCSSSCHHHHHHHHHHTTCEEECSSSCGGGCCSSCCEEEEC
T ss_pred             hhhhhhcCceEEEEecCCCCCHHHHHHHHHHCCCEEeCCcccccccCCCceEEEEc
Confidence            45689999999998865432 348889999999999998865     368866554

>2oyc_A PLP phosphatase, pyridoxal phosphate phosphatase; structural genomics, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI-2; 1.72A {Homo sapiens} PDB: 2p27_A 2p69_A* 2cft_A* 2cfs_A 2cfr_A*

Probab=85.73  E-value=0.95  Score=41.90  Aligned_cols=21  Identities=14%  Similarity=-0.012  Sum_probs=14.7

Q ss_pred             ccHHHHHHHHh-cCccEEEecC
Q 044162          157 PFVRSFLEEAS-RLFEISVCTL  177 (369)
Q Consensus       157 Pgl~eFL~~ls-~~yEi~I~T~  177 (369)
                      |+..++|+.+. +.+.+++.|+
T Consensus        40 ~~~~~~l~~l~~~g~~~~~~Tn   61 (306)
T 2oyc_A           40 PGAPELLERLARAGKAALFVSN   61 (306)
T ss_dssp             TTHHHHHHHHHHTTCEEEEEEC
T ss_pred             cCHHHHHHHHHHCCCeEEEEEC
Confidence            56777777765 5677777774

>2amy_A PMM 2, phosphomannomutase 2; HS.459855, HS.313504, BC008310, phosphatase, PFAM PF03332, H superfamily, jaecken disease; 2.09A {Homo sapiens} SCOP: c.108.1.10 PDB: 2q4r_A

Probab=85.08  E-value=1.3  Score=39.49  Aligned_cols=17  Identities=29%  Similarity=0.333  Sum_probs=14.1

Q ss_pred             CceEEEEeCCCceeeec
Q 044162           92 RKLHLVLDLDHTLLHSR  108 (369)
Q Consensus        92 ~Kl~LVLDLD~TLIhs~  108 (369)
                      ++..+++||||||+.+.
T Consensus         5 ~~kli~~DlDGTLl~~~   21 (246)
T 2amy_A            5 GPALCLFDVDGTLTAPR   21 (246)
T ss_dssp             CSEEEEEESBTTTBCTT
T ss_pred             CceEEEEECCCCcCCCC
Confidence            45678999999999854

>1l7m_A Phosphoserine phosphatase; rossmann fold, four-helix bundle, B-hairpin, structural genomics, BSGC structure funded by NIH; 1.48A {Methanocaldococcus jannaschii} SCOP: c.108.1.4 PDB: 1f5s_A 1l7n_A 1l7p_A* 1l7o_A* 1j97_A*

Probab=84.79  E-value=0.36  Score=40.97  Aligned_cols=45  Identities=16%  Similarity=0.127  Sum_probs=37.1

Q ss_pred             EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCccc
Q 044162          153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFN  198 (369)
Q Consensus       153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~  198 (369)
                      ..+.|++.++|+.+. +.+.++|+|++...++..+++.++... +|.
T Consensus        75 ~~l~~~~~~~l~~l~~~g~~~~i~T~~~~~~~~~~~~~~~~~~-~~~  120 (211)
T 1l7m_A           75 ITPTEGAEETIKELKNRGYVVAVVSGGFDIAVNKIKEKLGLDY-AFA  120 (211)
T ss_dssp             CCBCTTHHHHHHHHHHTTEEEEEEEEEEHHHHHHHHHHHTCSE-EEE
T ss_pred             CCCCccHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCe-EEE
Confidence            456799999999997 569999999999999999988887653 453

>3oq0_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.70A {Saccharomyces cerevisiae}

Probab=83.82  E-value=1.8  Score=36.91  Aligned_cols=51  Identities=24%  Similarity=0.195  Sum_probs=35.9

Q ss_pred             Hhhh-cCceEEecccCCCCC------------hhHHHHHHhcCCEEEeccCCCceEEEecCCCc
Q 044162          312 SRIL-MGCTILFGDDDFEEL------------PLTWSRAEEMGAICTLVTDASVTHVVSSNTQS  362 (369)
Q Consensus       312 ~~VL-~g~~ivFSg~~p~~~------------p~lw~la~~~GA~v~~~i~~~vTHvVa~~~gT  362 (369)
                      ++|+ ++..|+|-..-....            +.+.+--+.+||+|+.=+|.+|||+|..++-.
T Consensus        18 rkIM~r~s~iYFdt~~~~~~~~~~~~~l~k~~~llkk~f~~LGa~I~~FFd~~VTiIITrR~~~   81 (151)
T 3oq0_A           18 GSHMKRDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITRRSVE   81 (151)
T ss_dssp             ---CCCCCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHHHTCEEESSCCTTCCEEEESSCGG
T ss_pred             HHHhccCCEEEEeCCCcchhhHHHHHHHHHHHHHHHHHHHHcCCEEeeecCCceEEEEeCCcCc
Confidence            4566 788999986543320            13444557999999999999999999988643

>2ho4_A Haloacid dehalogenase-like hydrolase domain containing 2; HDHD2, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; 2.20A {Mus musculus} PDB: 3hlt_A

Probab=83.64  E-value=1  Score=39.75  Aligned_cols=17  Identities=24%  Similarity=0.218  Sum_probs=12.2

Q ss_pred             ceEEEEeCCCceeeecc
Q 044162           93 KLHLVLDLDHTLLHSRL  109 (369)
Q Consensus        93 Kl~LVLDLD~TLIhs~~  109 (369)
                      -..+++||||||+++..
T Consensus         7 ik~i~fDlDGTLld~~~   23 (259)
T 2ho4_A            7 LKAVLVDLNGTLHIEDA   23 (259)
T ss_dssp             CCEEEEESSSSSCC---
T ss_pred             CCEEEEeCcCcEEeCCE
Confidence            34689999999998653

>3f9r_A Phosphomannomutase; trypanosome glycobiology structural genomics, isomerase, structural genomics consortium, SGC; 1.85A {Trypanosoma brucei} SCOP: c.108.1.0 PDB: 2i54_A* 2i55_A*

Probab=83.59  E-value=1.6  Score=39.55  Aligned_cols=16  Identities=38%  Similarity=0.613  Sum_probs=13.4

Q ss_pred             ceEEEEeCCCceeeec
Q 044162           93 KLHLVLDLDHTLLHSR  108 (369)
Q Consensus        93 Kl~LVLDLD~TLIhs~  108 (369)
                      ...+++||||||+++.
T Consensus         4 ~kli~~DlDGTLl~~~   19 (246)
T 3f9r_A            4 RVLLLFDVDGTLTPPR   19 (246)
T ss_dssp             SEEEEECSBTTTBSTT
T ss_pred             ceEEEEeCcCCcCCCC
Confidence            4578999999999864

>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A

Probab=83.24  E-value=2.4  Score=37.53  Aligned_cols=57  Identities=18%  Similarity=0.113  Sum_probs=40.6

Q ss_pred             HHHHHHH-HHHhhhcCceEEecccCCCCChhHHHHHHhcCCEEEeccCCC--ceEEEecC
Q 044162          303 VRSCLAK-IRSRILMGCTILFGDDDFEELPLTWSRAEEMGAICTLVTDAS--VTHVVSSN  359 (369)
Q Consensus       303 Vr~il~~-~r~~VL~g~~ivFSg~~p~~~p~lw~la~~~GA~v~~~i~~~--vTHvVa~~  359 (369)
                      .+..+.. -+..+|+|+.|.|++.+......+..+.+..||++....++.  .+|+|...
T Consensus       103 l~~~~~~a~~~~lF~g~~~~~~~~~~~~~~~l~~li~~~GG~v~~~~~~~~~~~~ivI~~  162 (209)
T 2etx_A          103 LQDALSRARERRLLEGYEIYVTPGVQPPPPQMGEIISCCGGTYLPSMPRSYKPQRVVITC  162 (209)
T ss_dssp             HHHHHHHHHHSCTTTTCEEEECTTCSSCHHHHHHHHHHTTCEECSSCCCSCCTTEEEECC
T ss_pred             HHHHHhhhhhCCCcCCcEEEEeCCCCCCHHHHHHHHHHCCCEEECCCCCCCCCceEEEEC
Confidence            4444433 334799999999987654333488899999999999988764  36777653

>3l7y_A Putative uncharacterized protein SMU.1108C; hydrolase; 2.00A {Streptococcus mutans}

Probab=83.12  E-value=0.65  Score=43.00  Aligned_cols=17  Identities=29%  Similarity=0.331  Sum_probs=14.0

Q ss_pred             ceEEEEeCCCceeeecc
Q 044162           93 KLHLVLDLDHTLLHSRL  109 (369)
Q Consensus        93 Kl~LVLDLD~TLIhs~~  109 (369)
                      ...+++||||||+.+..
T Consensus        37 iKli~fDlDGTLld~~~   53 (304)
T 3l7y_A           37 VKVIATDMDGTFLNSKG   53 (304)
T ss_dssp             CSEEEECCCCCCSCTTS
T ss_pred             eEEEEEeCCCCCCCCCC
Confidence            45789999999998754

>1q92_A 5(3)-deoxyribonucleotidase; alpha-beta rossman fold, hydrolase; HET: DRM; 1.40A {Homo sapiens} SCOP: c.108.1.8 PDB: 1mh9_A* 1q91_A* 1z4m_A* 1z4i_A* 1z4j_A* 1z4l_A* 1z4k_A* 1z4p_X* 1z4q_A* 2jau_A* 2jaw_A* 3u19_A* 3u13_A 4e88_A

Probab=83.01  E-value=0.37  Score=41.63  Aligned_cols=18  Identities=28%  Similarity=0.399  Sum_probs=15.3

Q ss_pred             CceEEEEeCCCceeeecc
Q 044162           92 RKLHLVLDLDHTLLHSRL  109 (369)
Q Consensus        92 ~Kl~LVLDLD~TLIhs~~  109 (369)
                      ++..+++||||||++|..
T Consensus         3 ~~k~viFDlDGTL~Ds~~   20 (197)
T 1q92_A            3 RALRVLVDMDGVLADFEG   20 (197)
T ss_dssp             CCEEEEECSBTTTBCHHH
T ss_pred             CceEEEEeCCCCCccCcH
Confidence            556789999999999864

>1l7m_A Phosphoserine phosphatase; rossmann fold, four-helix bundle, B-hairpin, structural genomics, BSGC structure funded by NIH; 1.48A {Methanocaldococcus jannaschii} SCOP: c.108.1.4 PDB: 1f5s_A 1l7n_A 1l7p_A* 1l7o_A* 1j97_A*

Probab=82.88  E-value=0.89  Score=38.40  Aligned_cols=16  Identities=31%  Similarity=0.580  Sum_probs=13.6

Q ss_pred             ceEEEEeCCCceeeec
Q 044162           93 KLHLVLDLDHTLLHSR  108 (369)
Q Consensus        93 Kl~LVLDLD~TLIhs~  108 (369)
                      ...+++||||||+++.
T Consensus         5 ~k~i~fDlDGTL~d~~   20 (211)
T 1l7m_A            5 KKLILFDFDSTLVNNE   20 (211)
T ss_dssp             CEEEEEECCCCCBSSC
T ss_pred             CcEEEEeCCCCCCCcc
Confidence            3568999999999984

>1rlm_A Phosphatase; HAD family, rossman fold, hydrolase; 1.90A {Escherichia coli} SCOP: c.108.1.10 PDB: 1rlt_A 1rlo_A* 2hf2_A

Probab=82.64  E-value=0.75  Score=41.80  Aligned_cols=15  Identities=33%  Similarity=0.472  Sum_probs=12.7

Q ss_pred             eEEEEeCCCceeeec
Q 044162           94 LHLVLDLDHTLLHSR  108 (369)
Q Consensus        94 l~LVLDLD~TLIhs~  108 (369)
                      ..+++||||||+++.
T Consensus         4 kli~~DlDGTLl~~~   18 (271)
T 1rlm_A            4 KVIVTDMDGTFLNDA   18 (271)
T ss_dssp             CEEEECCCCCCSCTT
T ss_pred             cEEEEeCCCCCCCCC
Confidence            468999999999864

>1yv9_A Hydrolase, haloacid dehalogenase family; hypothetical protein, struc genomics, PSI, protein structure initiative; 2.80A {Enterococcus faecalis} SCOP: c.108.1.14

Probab=82.25  E-value=1.1  Score=40.20  Aligned_cols=16  Identities=25%  Similarity=0.376  Sum_probs=13.5

Q ss_pred             ceEEEEeCCCceeeec
Q 044162           93 KLHLVLDLDHTLLHSR  108 (369)
Q Consensus        93 Kl~LVLDLD~TLIhs~  108 (369)
                      ...+++||||||+.+.
T Consensus         5 ~k~v~fDlDGTL~~~~   20 (264)
T 1yv9_A            5 YQGYLIDLDGTIYLGK   20 (264)
T ss_dssp             CCEEEECCBTTTEETT
T ss_pred             CCEEEEeCCCeEEeCC
Confidence            4578999999999864

>2x4d_A HLHPP, phospholysine phosphohistidine inorganic pyrophos phosphatase; hydrolase; 1.92A {Homo sapiens}

Probab=82.14  E-value=3.1  Score=36.55  Aligned_cols=15  Identities=27%  Similarity=0.361  Sum_probs=13.0

Q ss_pred             eEEEEeCCCceeeec
Q 044162           94 LHLVLDLDHTLLHSR  108 (369)
Q Consensus        94 l~LVLDLD~TLIhs~  108 (369)
                      ..+++||||||+++.
T Consensus        13 k~i~fDlDGTLl~s~   27 (271)
T 2x4d_A           13 RGVLLDISGVLYDSG   27 (271)
T ss_dssp             CEEEECCBTTTEECC
T ss_pred             CEEEEeCCCeEEecC
Confidence            468999999999974

>2rbk_A Putative uncharacterized protein; HAD-like phosphatase, unknown function; 1.00A {Bacteroides thetaiotaomicron} SCOP: c.108.1.10 PDB: 1ymq_A 2rb5_A 2rav_A 2rar_A

Probab=81.51  E-value=0.45  Score=42.94  Aligned_cols=16  Identities=31%  Similarity=0.385  Sum_probs=13.2

Q ss_pred             eEEEEeCCCceeeecc
Q 044162           94 LHLVLDLDHTLLHSRL  109 (369)
Q Consensus        94 l~LVLDLD~TLIhs~~  109 (369)
                      ..+++||||||+++..
T Consensus         3 kli~~DlDGTLl~~~~   18 (261)
T 2rbk_A            3 KALFFDIDGTLVSFET   18 (261)
T ss_dssp             CEEEECSBTTTBCTTT
T ss_pred             cEEEEeCCCCCcCCCC
Confidence            3689999999998754

>1u02_A Trehalose-6-phosphate phosphatase related protein; structural genomics, PSI; 1.92A {Thermoplasma acidophilum} SCOP: c.108.1.15

Probab=81.33  E-value=1.2  Score=39.92  Aligned_cols=33  Identities=18%  Similarity=0.162  Sum_probs=21.0

Q ss_pred             ccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHh
Q 044162          157 PFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLL  190 (369)
Q Consensus       157 Pgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~l  190 (369)
                      |...+.|+++. +. .++|-|.-+...+..+++.+
T Consensus        26 ~~~~~al~~l~~~g-~v~iaTGR~~~~~~~~~~~l   59 (239)
T 1u02_A           26 AGLLSLISDLKERF-DTYIVTGRSPEEISRFLPLD   59 (239)
T ss_dssp             HHHHHHHHHHHHHS-EEEEECSSCHHHHHHHSCSS
T ss_pred             HHHHHHHHHHhcCC-CEEEEeCCCHHHHHHHhccc
Confidence            56677777776 45 67777766666666555433

>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A

Probab=80.06  E-value=1.7  Score=37.98  Aligned_cols=40  Identities=13%  Similarity=-0.095  Sum_probs=32.6

Q ss_pred             HHhhhcCceEEecccCCCC-ChhHHHHHHhcCCEEEeccCC
Q 044162          311 RSRILMGCTILFGDDDFEE-LPLTWSRAEEMGAICTLVTDA  350 (369)
Q Consensus       311 r~~VL~g~~ivFSg~~p~~-~p~lw~la~~~GA~v~~~i~~  350 (369)
                      +..+|+|+.+.|++-++.. ...+..+.+..||+++.++..
T Consensus       112 ~~~lF~g~~~~~~~~~~~~~~~~l~~li~~~GG~v~~~~~~  152 (214)
T 1t15_A          112 DRKIFRGLEICCYGPFTNMPTDQLEWMVQLCGASVVKELSS  152 (214)
T ss_dssp             TSCTTTTCEEEECSCCSSSCHHHHHHHHHHTTCEECCSGGG
T ss_pred             CCcccCCCEEEEEecCCCCCHHHHHHHHHHCCCEEecCccc
Confidence            4579999999998866542 348899999999999998765

>3bwv_A Putative 5'(3')-deoxyribonucleotidase; NP_764060.1, deoxyribonucleotidase-like protein; HET: MSE; 1.55A {Staphylococcus epidermidis}

Probab=80.02  E-value=0.53  Score=39.90  Aligned_cols=16  Identities=19%  Similarity=0.322  Sum_probs=13.9

Q ss_pred             eEEEEeCCCceeeecc
Q 044162           94 LHLVLDLDHTLLHSRL  109 (369)
Q Consensus        94 l~LVLDLD~TLIhs~~  109 (369)
                      ..+++||||||++|..
T Consensus         5 ~~viFD~DGtL~Ds~~   20 (180)
T 3bwv_A            5 QRIAIDMDEVLADTLG   20 (180)
T ss_dssp             CEEEEETBTTTBCHHH
T ss_pred             cEEEEeCCCcccccHH
Confidence            5689999999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	369
d1ta0a_	181	c.108.1.16 (A:) Carboxy-terminal domain RNA polyme	2e-21

>d1ta0a_ c.108.1.16 (A:) Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 181

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NLI interacting factor-like phosphatase
domain: Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.6 bits (219), Expect = 2e-21
 Identities = 42/225 (18%), Positives = 74/225 (32%), Gaps = 52/225 (23%)

Query: 86  KNLLRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIK 145
                  K+ +V+DLD TL+HS       +D                          +I 
Sbjct: 8   AKAQDSDKICVVIDLDETLVHSSFKPVNNADFIIP---------------------VEID 46

Query: 146 IGDNVLLVKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITRE 205
              + + V  RP V  FL+    LFE  + T    +YA     LLD    +         
Sbjct: 47  GVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRESC 106

Query: 206 DFKQ-KERKYLDLVLGQENSIVIVDDTESVWGGRVENLITVGSYDFFKDKKKNDCKSYSE 264
            F +    K L  +      ++I+D++ + +    +N + V S+                
Sbjct: 107 VFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASW---------------- 150

Query: 265 QMSDESESDGALANILRALKAVHALYFDNPGNHAAGRDVRSCLAK 309
               ++ SD  L ++L   + +  +            DV S L +
Sbjct: 151 ---FDNMSDTELHDLLPFFEQLSRV-----------DDVYSVLRQ 181

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	369
d1ta0a_	181	Carboxy-terminal domain RNA polymerase II polypept	100.0
d1u7pa_	164	Magnesium-dependent phosphatase-1, Mdp1 {Mouse (Mu	98.52
d1wf6a_	132	DNA topoisomerase II binding protein 1, TopBP1 {Hu	98.34
d2hdoa1	207	Phosphoglycolate phosphatase {Lactobacillus planta	98.16
d1l7ba_	92	NAD+-dependent DNA ligase, domain 4 {Thermus therm	98.15
d1cdza_	96	DNA-repair protein XRCC1 {Human (Homo sapiens) [Ta	98.14
d1te2a_	218	Phosphatase YniC {Escherichia coli [TaxId: 562]}	98.11
d2ah5a1	210	predicted phosphatase SP0104 {Streptococcus pneumo	98.11
d2go7a1	204	Hypothetical protein SP2064 {Streptococcus pneumon	98.11
d1ltqa1	149	Polynucleotide kinase, phosphatase domain {Bacteri	98.08
d1t15a1	109	Breast cancer associated protein, BRCA1 {Human (Ho	97.97
d2hsza1	224	Phosphoglycolate phosphatase Gph {Haemophilus somn	97.94
d1t15a2	102	Breast cancer associated protein, BRCA1 {Human (Ho	97.82
d2feaa1	226	2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate	97.8
d2hcfa1	228	Hypothetical protein CT1708 {Chlorobium tepidum [T	97.63
d1in1a_	88	DNA ligase III alpha {Human (Homo sapiens) [TaxId:	97.59
d2fdra1	222	Hypothetical protein Atu0790 {Agrobacterium tumefa	97.58
d2obba1	122	Hypothetical protein BT0820 {Bacteroides thetaiota	97.55
d2fi1a1	187	Putative hydrolase SP0805 {Streptococcus pneumonia	97.39
d1x42a1	230	Hypothetical protein PH0459 {Archaeon Pyrococcus h	96.97
d2o2xa1	209	Hypothetical protein Mll2559 {Mesorhizobium loti [	96.97
d1cr6a1	222	Epoxide hydrolase, N-terminal domain {Mouse (Mus m	96.95
d2b0ca1	197	Putative phosphatase YihX {Escherichia coli [TaxId	96.89
d2fpwa1	161	Histidine biosynthesis bifunctional protein HisB,	96.72
d1nnla_	217	Phosphoserine phosphatase {Human (Homo sapiens) [T	96.63
d1swva_	257	Phosphonoacetaldehyde hydrolase {Bacillus cereus [	96.37
d2gfha1	247	N-acylneuraminate-9-phosphatase NANP {Mouse (Mus m	96.23
d1xpja_	124	Hypothetical protein VC0232 {Vibrio cholerae [TaxI	96.22
d2bdua1	291	Cytosolic 5'-nucleotidase III {Mouse (Mus musculus	95.89
d1zs9a1	253	E-1 enzyme {Human(Homo sapiens) [TaxId: 9606]}	95.66
d1yj5a1	195	5' polynucleotide kinase-3' phosphatase, middle do	95.41
d2gmwa1	182	D,D-heptose 1,7-bisphosphate phosphatase GmhB {Esc	95.33
d2amya1	243	Phosphomannomutase 2 {Human (Homo sapiens) [TaxId:	95.22
d1zrna_	220	L-2-Haloacid dehalogenase, HAD {Pseudomonas sp., s	94.62
d1xvia_	232	Putative mannosyl-3-phosphoglycerate phosphatase M	94.56
d2fuea1	244	Phosphomannomutase 1 {Human (Homo sapiens) [TaxId:	94.11
d1rkqa_	271	Hypothetical protein YidA {Escherichia coli [TaxId	93.55
d1o08a_	221	beta-Phosphoglucomutase {Lactococcus lactis [TaxId	93.05
d2c4na1	250	NagD {Escherichia coli [TaxId: 562]}	92.92
d1wr8a_	230	Phosphoglycolate phosphatase, PGPase {Pyrococcus h	92.63
d1vjra_	261	Hypothetical protein TM1742 {Thermotoga maritima [	92.5
d1s2oa1	244	Sucrose-phosphatase Slr0953 {Synechocystis sp. pcc	92.49
d1nrwa_	285	Hypothetical protein YwpJ {Bacillus subtilis [TaxI	92.35
d1l6ra_	225	Phosphoglycolate phosphatase, PGPase {Archaeon The	92.16
d1qq5a_	245	L-2-Haloacid dehalogenase, HAD {Xanthobacter autot	91.86
d2b82a1	209	Class B acid phosphatase, AphA {Escherichia coli [	91.8
d1yv9a1	253	Putative hydrolase EF1188 {Enterococcus faecalis [	91.45
d1nf2a_	267	Hypothetical protein TM0651 {Thermotoga maritima [	91.43
d1wvia_	253	Putative phosphatase SMU.1415c {Streptococcus muta	91.41
d2b30a1	283	PFL1270w orthologue {Plasmodium vivax [TaxId: 5855	91.35
d1wzca1	243	Putative mannosyl-3-phosphoglycerate phosphatase M	90.69
d1j97a_	210	Phosphoserine phosphatase {Archaeon Methanococcus	90.28
d1u02a_	229	Trehalose-6-phosphate phosphatase related protein	88.59
d1rkua_	206	Homoserine kinase ThrH {Pseudomonas aeruginosa [Ta	88.05
d1rlma_	269	Sugar phosphatase SupH (YbiV) {Escherichia coli [T	86.83
d1zd3a1	225	Epoxide hydrolase, N-terminal domain {Human (Homo	85.7

>d1ta0a_ c.108.1.16 (A:) Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NLI interacting factor-like phosphatase
domain: Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-40  Score=293.89  Aligned_cols=167  Identities=26%  Similarity=0.329  Sum_probs=141.3

Q ss_pred             hhhcCCceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEc--CceEEEEeCccHHHHHH
Q 044162           87 NLLRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIG--DNVLLVKLRPFVRSFLE  164 (369)
Q Consensus        87 ~ll~~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~--~~~~~vklRPgl~eFL~  164 (369)
                      +...++|++||||||||||||+..+.-.                       ....+.+...  ...+|+++|||+++||+
T Consensus         9 ~~~~~~k~~LVLDLDeTLihs~~~~~~~-----------------------~~~~~~~~~~~~~~~~~v~~RP~l~eFL~   65 (181)
T d1ta0a_           9 KAQDSDKICVVIDLDETLVHSSFKPVNN-----------------------ADFIIPVEIDGVVHQVYVLKRPHVDEFLQ   65 (181)
T ss_dssp             CGGGTTSCEEEECCBTTTEEEESSCCTT-----------------------CSEEEEEEETTEEEEEEEEECTTHHHHHH
T ss_pred             CcccCCCeEEEEeCCCCEEccccCCCCC-----------------------ccceeeecccceeeeeEEecCCCHHHHHH
Confidence            4566899999999999999998765311                       1112222222  23789999999999999


Q ss_pred             HHhcCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccC---cccccccccCCCCCcEEEEeCCccccccCCCc
Q 044162          165 EASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQ---KERKYLDLVLGQENSIVIVDDTESVWGGRVEN  241 (369)
Q Consensus       165 ~ls~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~---~~~KdL~~l~~~~~~vvIvDD~~~~w~~~~~N  241 (369)
                      .++++|||+|||||++.||++|++.|||++. |..+++ |++|..   .++|||+++++++++||||||++.+|..|++|
T Consensus        66 ~l~~~yei~I~Ta~~~~YA~~il~~ldp~~~-~~~~~~-r~~c~~~~~~~~KdL~~l~~~l~~vvivDd~~~~~~~~~~N  143 (181)
T d1ta0a_          66 RMGELFECVLFTASLAKYADPVADLLDKWGA-FRARLF-RESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDN  143 (181)
T ss_dssp             HHHHHSEEEEECSSCHHHHHHHHHHHCSSCC-EEEEEC-GGGSEEETTEEECCGGGSCSCGGGEEEECSCGGGGTTCGGG
T ss_pred             HHHhceEEEEEcCCcHHHHHHHHHHhccCCc-eeEEEE-eeeeeecCCcccccHhhcCCCHHHeEEEcCChhhhhcCccC
Confidence            9999999999999999999999999999975 545554 888864   37899999999999999999999999999999


Q ss_pred             eEEeCcccccccccCCCCCcccccccCCcccchHHHHHHHHHHHHHHHhcCCCCCCCCCCcHHHHHH
Q 044162          242 LITVGSYDFFKDKKKNDCKSYSEQMSDESESDGALANILRALKAVHALYFDNPGNHAAGRDVRSCLA  308 (369)
Q Consensus       242 ~I~I~~y~fF~~~~~~~~~s~~e~~~de~~~D~~L~~l~~~L~~ih~~ff~~~~~~~~~~DVr~il~  308 (369)
                      +|+|+||.     |              +.+|++|..|+++|++++.           .+|||++|+
T Consensus       144 ~I~I~~f~-----~--------------~~~D~eL~~l~~~L~~l~~-----------~~DVR~~l~  180 (181)
T d1ta0a_         144 AVPVASWF-----D--------------NMSDTELHDLLPFFEQLSR-----------VDDVYSVLR  180 (181)
T ss_dssp             BCCCCCCS-----S--------------CTTCCHHHHHHHHHHHHTT-----------CSCHHHHHC
T ss_pred             eeEecCcC-----C--------------CCCcHHHHHHHHHHHHHcc-----------CCcHHHHhc
Confidence            99999996     2              5789999999999999986           789999986

>d1u7pa_ c.108.1.17 (A:) Magnesium-dependent phosphatase-1, Mdp1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Magnesium-dependent phosphatase-1, Mdp1
domain: Magnesium-dependent phosphatase-1, Mdp1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.52  E-value=1.9e-08  Score=85.31  Aligned_cols=94  Identities=16%  Similarity=0.036  Sum_probs=65.8

Q ss_pred             eEEEEeCccHHHHHHHHh-cCccEEEecCCc-HHHHHHHHHHhCCCCCcccceEEeeccccCcccccccccCCCCCcEEE
Q 044162          150 VLLVKLRPFVRSFLEEAS-RLFEISVCTLGN-REYATRAVKLLDPDCKYFNSRIITREDFKQKERKYLDLVLGQENSIVI  227 (369)
Q Consensus       150 ~~~vklRPgl~eFL~~ls-~~yEi~I~T~g~-~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~~~KdL~~l~~~~~~vvI  227 (369)
                      ...+++.||+.++|+.+. +.|.+.|.|++. ..++..+++.+.... +|......+......+.+-++.++.+.+.+|+
T Consensus        42 ~~~~~l~pgv~e~L~~L~~~G~~~~v~S~~~~~~~~~~~l~~~~~~~-~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~l~  120 (164)
T d1u7pa_          42 GQNIQLYPEVPEVLGRLQSLGVPVAAASRTSEIQGANQLLELFDLGK-YFIQREIYPGSKVTHFERLHHKTGVPFSQMVF  120 (164)
T ss_dssp             CCEECCCTTHHHHHHHHHHTTCCEEEEECCSCHHHHHHHHHHTTCGG-GCSEEEESSSCHHHHHHHHHHHHCCCGGGEEE
T ss_pred             ccccccchHHHHHHHHHHHCCCcEEEEeccccchhhccchhcccccc-cceeeecccCCChHHHHHHHHHhCCChHHEEE
Confidence            345889999999999997 569999999765 578888899888773 56542221111111234456677889999999


Q ss_pred             EeCCccccccCCCceEE
Q 044162          228 VDDTESVWGGRVENLIT  244 (369)
Q Consensus       228 vDD~~~~w~~~~~N~I~  244 (369)
                      |||++.-.......|+.
T Consensus       121 igD~~~di~aA~~aG~~  137 (164)
T d1u7pa_         121 FDDENRNIIDVGRLGVT  137 (164)
T ss_dssp             EESCHHHHHHHHTTTCE
T ss_pred             EcCCHHHHHHHHHcCCE
Confidence            99998666443444543

>d1wf6a_ c.15.1.5 (A:) DNA topoisomerase II binding protein 1, TopBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: BRCT domain
superfamily: BRCT domain
family: DNA topoisomerase II binding protein 1, TopBP1
domain: DNA topoisomerase II binding protein 1, TopBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=1.2e-07  Score=78.02  Aligned_cols=56  Identities=20%  Similarity=0.197  Sum_probs=47.7

Q ss_pred             HHhhhcCceEEecccCCCCChhHHHHHHhcCCEEEeccCCCceEEEecCCCccccc
Q 044162          311 RSRILMGCTILFGDDDFEELPLTWSRAEEMGAICTLVTDASVTHVVSSNTQSETFE  366 (369)
Q Consensus       311 r~~VL~g~~ivFSg~~p~~~p~lw~la~~~GA~v~~~i~~~vTHvVa~~~gT~K~~  366 (369)
                      ...+|+||+|+|||+-......++++++.+||++...+++.+||||+.+..+.|.+
T Consensus        37 ~~~~f~G~~i~isGf~~~~~~~l~~~i~~~GG~~~~~~~~~vTHvIv~~~~~~~~~   92 (132)
T d1wf6a_          37 PEDLLDGCRIYLCGFSGRKLDKLRRLINSGGGVRFNQLNEDVTHVIVGDYDDELKQ   92 (132)
T ss_dssp             CTTTTTTCEEEEESCCSHHHHHHHHHHHHTTCEEESSCCSSCCEEEESSCCSHHHH
T ss_pred             chhhhCCeEEEEeeCCCHHHHHHHHHHHHcCCEEecccCCCceEEEecCCCccHHH
Confidence            34689999999999544344599999999999999999999999999998887654

>d2hdoa1 c.108.1.6 (A:1-207) Phosphoglycolate phosphatase {Lactobacillus plantarum [TaxId: 1590]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Phosphoglycolate phosphatase
species: Lactobacillus plantarum [TaxId: 1590]

Probab=98.16  E-value=7.7e-07  Score=76.73  Aligned_cols=82  Identities=15%  Similarity=0.135  Sum_probs=65.9

Q ss_pred             EEeCccHHHHHHHHhcCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCcEE
Q 044162          153 VKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENSIV  226 (369)
Q Consensus       153 vklRPgl~eFL~~ls~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~vv  226 (369)
                      +.+.||+.++|+.+.+.+-+.|.|++.+..+..+++.++.. .+|. -+++.++....      +.+-++.++.+++.++
T Consensus        81 ~~~~~g~~~~L~~l~~~~~~~ivT~~~~~~~~~~l~~~~l~-~~f~-~i~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~l  158 (207)
T d2hdoa1          81 IELYPGITSLFEQLPSELRLGIVTSQRRNELESGMRSYPFM-MRMA-VTISADDTPKRKPDPLPLLTALEKVNVAPQNAL  158 (207)
T ss_dssp             CEECTTHHHHHHHSCTTSEEEEECSSCHHHHHHHHTTSGGG-GGEE-EEECGGGSSCCTTSSHHHHHHHHHTTCCGGGEE
T ss_pred             cccccchhhhhhhhccccccccccccccccccccccccccc-cccc-ccccccccccchhhhhhhcccccceeeecccee
Confidence            56789999999999988999999999999999999988876 4774 47766665432      3445666788889999


Q ss_pred             EEeCCccccc
Q 044162          227 IVDDTESVWG  236 (369)
Q Consensus       227 IvDD~~~~w~  236 (369)
                      +|+|++.-..
T Consensus       159 ~VgDs~~Di~  168 (207)
T d2hdoa1         159 FIGDSVSDEQ  168 (207)
T ss_dssp             EEESSHHHHH
T ss_pred             EecCCHHHHH
Confidence            9999975443

>d1l7ba_ c.15.1.2 (A:) NAD+-dependent DNA ligase, domain 4 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: BRCT domain
superfamily: BRCT domain
family: DNA ligase
domain: NAD+-dependent DNA ligase, domain 4
species: Thermus thermophilus [TaxId: 274]

Probab=98.15  E-value=5.1e-07  Score=69.98  Aligned_cols=57  Identities=16%  Similarity=0.095  Sum_probs=51.2

Q ss_pred             hhhcCceEEecccCCCCChhHHHHHHhcCCEEEeccCCCceEEEecCCCcccccccC
Q 044162          313 RILMGCTILFGDDDFEELPLTWSRAEEMGAICTLVTDASVTHVVSSNTQSETFEWAE  369 (369)
Q Consensus       313 ~VL~g~~ivFSg~~p~~~p~lw~la~~~GA~v~~~i~~~vTHvVa~~~gT~K~~~a~  369 (369)
                      ..|+|.+|+|+|.+...+..++.+++.+||+++..++..|||||+.+..+.|.+.|+
T Consensus         6 ~~l~G~~iv~TG~~~~~R~e~~~~i~~~Gg~v~~sVs~~t~~LV~g~~~g~K~~kA~   62 (92)
T d1l7ba_           6 EALKGLTFVITGELSRPREEVKALLRRLGAKVTDSVSRKTSYLVVGENPGSKLEKAR   62 (92)
T ss_dssp             CSSTTCEEECSTTTTSCHHHHHHHHHHTTCEEESCCSSSCCCBEECSSSSTTHHHHH
T ss_pred             CCcCCCEEEEeCCccCCHHHHHHHHHHhCCEEcCccccceeEEEECCCCCcHHHHHH
Confidence            468999999999996556699999999999999999999999999988888988773

>d1cdza_ c.15.1.1 (A:) DNA-repair protein XRCC1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: BRCT domain
superfamily: BRCT domain
family: DNA-repair protein XRCC1
domain: DNA-repair protein XRCC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=6.3e-07  Score=68.89  Aligned_cols=56  Identities=11%  Similarity=0.034  Sum_probs=48.1

Q ss_pred             hhhcCceEEecccCCCC-ChhHHHHHHhcCCEEEeccCCCceEEEecCCCccccccc
Q 044162          313 RILMGCTILFGDDDFEE-LPLTWSRAEEMGAICTLVTDASVTHVVSSNTQSETFEWA  368 (369)
Q Consensus       313 ~VL~g~~ivFSg~~p~~-~p~lw~la~~~GA~v~~~i~~~vTHvVa~~~gT~K~~~a  368 (369)
                      ..|+||.++++|-+|.. ...+.++.+++||++..+++++|||+|+.+..+.|.++|
T Consensus         4 d~F~g~~f~v~g~~~~~~~~~l~~~i~~~GG~v~~~~~~~~THvI~~~~~~~~~~~~   60 (96)
T d1cdza_           4 DFFQGKHFFLYGEFPGDERRKLIRYVTAFNGELEDYMSDRVQFVITAQEWDPSFEEA   60 (96)
T ss_dssp             CTTTTCEEEECSCCCTHHHHHHHHHHHHTTCEECSSCSTTCSEEECSSCCCHHHHHH
T ss_pred             cccCCcEEEEeCCCCHHHHHHHHHHHHHhCCEEeccCCCCceEEEEccCCcceeeeh
Confidence            46899999999988764 348899999999999999999999999998877776544

>d1te2a_ c.108.1.6 (A:) Phosphatase YniC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Phosphatase YniC
species: Escherichia coli [TaxId: 562]

Probab=98.11  E-value=1e-06  Score=76.16  Aligned_cols=88  Identities=10%  Similarity=0.074  Sum_probs=68.6

Q ss_pred             EeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCcEE
Q 044162          154 KLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENSIV  226 (369)
Q Consensus       154 klRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~vv  226 (369)
                      ...||+.++|+.+. +.|.+.|.|++.+.++..+++.++-. .+|. .+++.++....      +.+-++.++.+.+.++
T Consensus        88 ~~~pg~~~~l~~L~~~g~~~~i~T~~~~~~~~~~l~~~~l~-~~F~-~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l  165 (218)
T d1te2a_          88 PLLPGVREAVALCKEQGLLVGLASASPLHMLEKVLTMFDLR-DSFD-ALASAEKLPYSKPHPQVYLDCAAKLGVDPLTCV  165 (218)
T ss_dssp             CBCTTHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCG-GGCS-EEEECTTSSCCTTSTHHHHHHHHHHTSCGGGEE
T ss_pred             cccchHHHHHHHhhhcccccccccccccccccccccccccc-cccc-ccccccccccchhhHHHHHHHHHHcCCCchhcE
Confidence            45799999999997 67999999999999999999999887 4885 47766664431      4555667788999999


Q ss_pred             EEeCCccccccCCCceE
Q 044162          227 IVDDTESVWGGRVENLI  243 (369)
Q Consensus       227 IvDD~~~~w~~~~~N~I  243 (369)
                      +|+|++.-.......|+
T Consensus       166 ~igD~~~di~aA~~~G~  182 (218)
T d1te2a_         166 ALEDSVNGMIASKAARM  182 (218)
T ss_dssp             EEESSHHHHHHHHHTTC
T ss_pred             EEeeCHHHHHHHHHcCC
Confidence            99999865543333344

>d2ah5a1 c.108.1.6 (A:1-210) predicted phosphatase SP0104 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: predicted phosphatase SP0104
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.11  E-value=1.6e-06  Score=74.53  Aligned_cols=90  Identities=21%  Similarity=0.186  Sum_probs=69.1

Q ss_pred             EEEeCccHHHHHHHHhcCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc----ccccccccCCCCCcEEE
Q 044162          152 LVKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK----ERKYLDLVLGQENSIVI  227 (369)
Q Consensus       152 ~vklRPgl~eFL~~ls~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~----~~KdL~~l~~~~~~vvI  227 (369)
                      ..++.||+.++|+.+++.+.++|.|++.+.++..+++.++-.. +|. .+++.++....    +.+-++.++.+.+.+|+
T Consensus        82 ~~~~~~~~~~~l~~l~~~~~~~i~t~~~~~~~~~~l~~~gl~~-~fd-~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~v~  159 (210)
T d2ah5a1          82 EAQLFPQIIDLLEELSSSYPLYITTTKDTSTAQDMAKNLEIHH-FFD-GIYGSSPEAPHKADVIHQALQTHQLAPEQAII  159 (210)
T ss_dssp             SCEECTTHHHHHHHHHTTSCEEEEEEEEHHHHHHHHHHTTCGG-GCS-EEEEECSSCCSHHHHHHHHHHHTTCCGGGEEE
T ss_pred             cccchhHHHHHHhhhhcccchhhcccccchhhhHHHHhhcccc-ccc-ccccccccccccccccchhhhhhhccccccee
Confidence            4678999999999999999999999999999999999999884 785 46655554321    33445667788999999


Q ss_pred             EeCCccccccCCCceE
Q 044162          228 VDDTESVWGGRVENLI  243 (369)
Q Consensus       228 vDD~~~~w~~~~~N~I  243 (369)
                      |+|+..-.......|+
T Consensus       160 VGDs~~Di~aa~~aGi  175 (210)
T d2ah5a1         160 IGDTKFDMLGARETGI  175 (210)
T ss_dssp             EESSHHHHHHHHHHTC
T ss_pred             ecCCHHHHHHHHHcCC
Confidence            9999754433333344

>d2go7a1 c.108.1.6 (A:3-206) Hypothetical protein SP2064 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Hypothetical protein SP2064
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.11  E-value=1.3e-06  Score=75.01  Aligned_cols=89  Identities=20%  Similarity=0.096  Sum_probs=65.0

Q ss_pred             EEEeCccHHHHHHHHhc-CccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCc
Q 044162          152 LVKLRPFVRSFLEEASR-LFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENS  224 (369)
Q Consensus       152 ~vklRPgl~eFL~~ls~-~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~  224 (369)
                      .+.+.||+.++|+.+.+ .+.+.|.|++.+ ++..+++.++-.+ +|. .+++.++....      +..-++.++.+++.
T Consensus        80 ~~~~~pgv~~~L~~L~~~g~~~~v~Sn~~~-~~~~~l~~~gl~~-~f~-~i~~s~~~~~~Kp~~~~~~~~~~~~~~~p~~  156 (204)
T d2go7a1          80 QVVLMPGAREVLAWADESGIQQFIYTHKGN-NAFTILKDLGVES-YFT-EILTSQSGFVRKPSPEAATYLLDKYQLNSDN  156 (204)
T ss_dssp             GCEECTTHHHHHHHHHHTTCEEEEECSSCT-HHHHHHHHHTCGG-GEE-EEECGGGCCCCTTSSHHHHHHHHHHTCCGGG
T ss_pred             cCcccchHHhhhhcccccccchhhhcccch-hhhhhhhhccccc-ccc-cccccccccccchhHHHHHHHHHHhCCCCce
Confidence            36678999999999984 599999999875 6788999998874 785 47765554331      33445667788999


Q ss_pred             EEEEeCCccccccCCCceE
Q 044162          225 IVIVDDTESVWGGRVENLI  243 (369)
Q Consensus       225 vvIvDD~~~~w~~~~~N~I  243 (369)
                      +++|+|++.-.......|+
T Consensus       157 ~l~VgD~~~Di~~A~~~G~  175 (204)
T d2go7a1         157 TYYIGDRTLDVEFAQNSGI  175 (204)
T ss_dssp             EEEEESSHHHHHHHHHHTC
T ss_pred             EEEEeCCHHHHHHHHHcCC
Confidence            9999999754433333343

>d1ltqa1 c.108.1.9 (A:153-301) Polynucleotide kinase, phosphatase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: phosphatase domain of polynucleotide kinase
domain: Polynucleotide kinase, phosphatase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=98.08  E-value=1.4e-07  Score=77.67  Aligned_cols=122  Identities=14%  Similarity=0.024  Sum_probs=71.4

Q ss_pred             CCceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHHHHHHHh-cC
Q 044162           91 MRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEAS-RL  169 (369)
Q Consensus        91 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~eFL~~ls-~~  169 (369)
                      .|+.++|+||||||+++....... +..                      +         ......||+.++|+.+. +.
T Consensus         5 ~kpk~vifDiDgTL~~~~~~~~~~-~~~----------------------~---------~~~~~~p~v~~~l~~l~~~G   52 (149)
T d1ltqa1           5 GKPKAVIFDVDGTLAKMNGRGPYD-LEK----------------------C---------DTDVINPMVVELSKMYALMG   52 (149)
T ss_dssp             TSCEEEEEETBTTTBCCSSCCTTC-GGG----------------------G---------GGCCBCHHHHHHHHHHHHTT
T ss_pred             CCCcEEEEEcCCCcEeCCCCCcCC-ccc----------------------c---------ccCccCHHHHHHHHHHHhcc
Confidence            466799999999999876543211 000                      0         01334699999999997 69


Q ss_pred             ccEEEecCCcHHHHHHHHHHhCC--------CCCcccceEEeeccccCc---cc--ccccccCCCCCc-EEEEeCCcccc
Q 044162          170 FEISVCTLGNREYATRAVKLLDP--------DCKYFNSRIITREDFKQK---ER--KYLDLVLGQENS-IVIVDDTESVW  235 (369)
Q Consensus       170 yEi~I~T~g~~~YA~~i~~~lDp--------~~~~f~~Ri~srd~~~~~---~~--KdL~~l~~~~~~-vvIvDD~~~~w  235 (369)
                      |+|++.|+-...|+....+.|..        .+..+ ..++.+..+...   ..  .-|..+..+... +++|||++...
T Consensus        53 ~~Iii~T~R~~~~~~~t~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~k~~~l~~~~~~~~~i~~~igD~~~dv  131 (149)
T d1ltqa1          53 YQIVVVSGRESGTKEDPTKYYRMTRKWVEDIAGVPL-VMQCQREQGDTRKDDVVKEEIFWKHIAPHFDVKLAIDDRTQVV  131 (149)
T ss_dssp             CEEEEEECSCCCCSSSTTHHHHHHHHHHHHTTCCCC-SEEEECCTTCCSCHHHHHHHHHHHHTTTTCEEEEEEECCHHHH
T ss_pred             CeEEEEecCcHHHHHHHHHHHHHHhhhhhhcCCCcE-EEeecccccccCCchHHHHHHHHHhccCCCceEEEEcCCHHHH
Confidence            99999999876655544443322        22222 234444444321   01  112233344444 46789999776


Q ss_pred             ccCCCceEEe
Q 044162          236 GGRVENLITV  245 (369)
Q Consensus       236 ~~~~~N~I~I  245 (369)
                      .....+||++
T Consensus       132 ~a~~~~Gi~~  141 (149)
T d1ltqa1         132 EMWRRIGVEC  141 (149)
T ss_dssp             HHHHHTTCCE
T ss_pred             HHHHHCCCcE
Confidence            5545566554

>d1t15a1 c.15.1.3 (A:1649-1757) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: BRCT domain
superfamily: BRCT domain
family: BRCT domain
domain: Breast cancer associated protein, BRCA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=1.5e-06  Score=68.96  Aligned_cols=51  Identities=18%  Similarity=0.152  Sum_probs=42.5

Q ss_pred             ceEEecccCCCCChhHHHHHHhcCCEEEeccCCCceEEEecCCC------ccccccc
Q 044162          318 CTILFGDDDFEELPLTWSRAEEMGAICTLVTDASVTHVVSSNTQ------SETFEWA  368 (369)
Q Consensus       318 ~~ivFSg~~p~~~p~lw~la~~~GA~v~~~i~~~vTHvVa~~~g------T~K~~~a  368 (369)
                      .+|++||+.|.....++++++.|||+++.+++++|||||+....      |.|+.+|
T Consensus         2 ~~i~~SGl~~~e~~~l~~~i~~~Gg~~~~~~~~~~THlI~~~~~~~~~~rt~K~l~a   58 (109)
T d1t15a1           2 MSMVVSGLTPEEFMLVYKFARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLG   58 (109)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHHTCEECSSCCTTCCEEEECBCTTSEECCBHHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHHHcCCEEEeEecCCccEEEEecCcchhhHhhHHHHHH
Confidence            47899998886666999999999999999999999999997533      5565544

>d2hsza1 c.108.1.6 (A:1-224) Phosphoglycolate phosphatase Gph {Haemophilus somnus [TaxId: 731]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Phosphoglycolate phosphatase Gph
species: Haemophilus somnus [TaxId: 731]

Probab=97.94  E-value=8.4e-06  Score=69.96  Aligned_cols=84  Identities=14%  Similarity=0.128  Sum_probs=66.4

Q ss_pred             EEEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCc
Q 044162          152 LVKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENS  224 (369)
Q Consensus       152 ~vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~  224 (369)
                      ..++.||+.++|+.+. ..+.++|.|++.+.+++.+++.++-. .+|.. +++.++....      +..-++.++.+.+.
T Consensus        93 ~~~l~~~~~~~L~~L~~~g~~~~i~tn~~~~~~~~~l~~~gl~-~~f~~-~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~  170 (224)
T d2hsza1          93 ISRLYPNVKETLEALKAQGYILAVVTNKPTKHVQPILTAFGID-HLFSE-MLGGQSLPEIKPHPAPFYYLCGKFGLYPKQ  170 (224)
T ss_dssp             SCEECTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTTCG-GGCSE-EECTTTSSSCTTSSHHHHHHHHHHTCCGGG
T ss_pred             ccchHHHHHHHHHHHhccCCcccccccccHHHHHHHHHhcCch-hhccc-cccccccccccccchhhHHHHHHhhhhhhc
Confidence            4678999999999997 56999999999999999999999987 57865 5555554432      23445567788999


Q ss_pred             EEEEeCCcccccc
Q 044162          225 IVIVDDTESVWGG  237 (369)
Q Consensus       225 vvIvDD~~~~w~~  237 (369)
                      +++|+|++.-+..
T Consensus       171 ~~~igD~~~Di~~  183 (224)
T d2hsza1         171 ILFVGDSQNDIFA  183 (224)
T ss_dssp             EEEEESSHHHHHH
T ss_pred             cchhcCcHHHHHH
Confidence            9999999865543

>d1t15a2 c.15.1.3 (A:1758-1859) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: BRCT domain
superfamily: BRCT domain
family: BRCT domain
domain: Breast cancer associated protein, BRCA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=6.3e-06  Score=63.34  Aligned_cols=52  Identities=13%  Similarity=-0.030  Sum_probs=41.9

Q ss_pred             HhhhcCceEEecccCCC-CChhHHHHHHhcCCEEEeccC-----CCceEEEecCCCcc
Q 044162          312 SRILMGCTILFGDDDFE-ELPLTWSRAEEMGAICTLVTD-----ASVTHVVSSNTQSE  363 (369)
Q Consensus       312 ~~VL~g~~ivFSg~~p~-~~p~lw~la~~~GA~v~~~i~-----~~vTHvVa~~~gT~  363 (369)
                      +++|+||.|+|||.++. ....+++|++++||+++.++.     ..+||+++....+.
T Consensus         1 kkiF~g~~i~~~g~~~~~~~~~L~~li~~~GG~v~~~~~~~~~~~~~t~~~i~~~~~~   58 (102)
T d1t15a2           1 RKIFRGLEICCYGPFTNMPTDQLEWMVQLCGASVVKELSSFTLGTGVHPIVVVQPDAW   58 (102)
T ss_dssp             SCTTTTCEEEECSCCSSSCHHHHHHHHHHTTCEECCSGGGCCCSTTCCEEEEECGGGC
T ss_pred             CCCCCCcEEEEeCCCCCcCHHHHHHHHHHhCCEEeeccccccccccccchheeccccc
Confidence            47999999999997765 344999999999999987663     36799998765444

>d2feaa1 c.108.1.20 (A:2-227) 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase MtnX {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: MtnX-like
domain: 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase MtnX
species: Bacillus subtilis [TaxId: 1423]

Probab=97.80  E-value=1.7e-05  Score=68.64  Aligned_cols=85  Identities=11%  Similarity=0.106  Sum_probs=58.5

Q ss_pred             EEEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccC-----------c------ccc
Q 044162          152 LVKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQ-----------K------ERK  213 (369)
Q Consensus       152 ~vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~-----------~------~~K  213 (369)
                      .++++||+.++|+.+. ..+.++|.|++.+.+++.+++.+++...++.+.+...++...           .      ..+
T Consensus        73 ~~~l~pg~~~~l~~L~~~g~~~~ivS~~~~~~i~~~l~~l~~~~~~~an~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~  152 (226)
T d2feaa1          73 DAKIREGFREFVAFINEHEIPFYVISGGMDFFVYPLLEGIVEKDRIYCNHASFDNDYIHIDWPHSCKGTCSNQCGCCKPS  152 (226)
T ss_dssp             HCCBCTTHHHHHHHHHHHTCCEEEEEEEEHHHHHHHHTTTSCGGGEEEEEEECSSSBCEEECTTCCCTTCCSCCSSCHHH
T ss_pred             ccchhHHHHHHHHHHHhcccccccCCcchhhhHHHHHHHcCCccceeeeeEEEeCCcceeccccccccccccCCHHHHHH
Confidence            3668999999999995 779999999999999999999887764333333322111100           0      011


Q ss_pred             cccccCCCCCcEEEEeCCccccc
Q 044162          214 YLDLVLGQENSIVIVDDTESVWG  236 (369)
Q Consensus       214 dL~~l~~~~~~vvIvDD~~~~w~  236 (369)
                      -++.++.+.+.++.|-|+..=..
T Consensus       153 ~~~~~~~~~~~~i~iGDs~~Dl~  175 (226)
T d2feaa1         153 VIHELSEPNQYIIMIGDSVTDVE  175 (226)
T ss_dssp             HHHHHCCTTCEEEEEECCGGGHH
T ss_pred             HHHHhcCCCceEEEEeCchhhHH
Confidence            13445677889999999985443

>d2hcfa1 c.108.1.6 (A:2-229) Hypothetical protein CT1708 {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Hypothetical protein CT1708
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.63  E-value=2.8e-05  Score=67.41  Aligned_cols=89  Identities=21%  Similarity=0.101  Sum_probs=63.0

Q ss_pred             EEeCccHHHHHHHHhcC--ccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCcc------cccccc---cCCC
Q 044162          153 VKLRPFVRSFLEEASRL--FEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQKE------RKYLDL---VLGQ  221 (369)
Q Consensus       153 vklRPgl~eFL~~ls~~--yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~~------~KdL~~---l~~~  221 (369)
                      +.+-||+.++|+.+++.  +.+.|.|++.+..+..+++.++... +|.. +++.++.....      ..-+..   .+.+
T Consensus        90 ~~~~~g~~~~L~~L~~~g~~~~~v~t~~~~~~~~~~l~~~gl~~-~fd~-i~~~~~~~~~k~~p~~~~~~~~~~~~~~~~  167 (228)
T d2hcfa1          90 ITLLEGVRELLDALSSRSDVLLGLLTGNFEASGRHKLKLPGIDH-YFPF-GAFADDALDRNELPHIALERARRMTGANYS  167 (228)
T ss_dssp             EEECTTHHHHHHHHHTCTTEEEEEECSSCHHHHHHHHHTTTCST-TCSC-EECTTTCSSGGGHHHHHHHHHHHHHCCCCC
T ss_pred             ceecCchHHHHhhhhccccccccccCCCcchhhhhhhhhhcccc-cccc-cccccccccccchhHHHHHHhhhhcccCCC
Confidence            56779999999999853  7889999999999999999999884 7854 56566544321      111122   2457


Q ss_pred             CCcEEEEeCCccccccCCCceE
Q 044162          222 ENSIVIVDDTESVWGGRVENLI  243 (369)
Q Consensus       222 ~~~vvIvDD~~~~w~~~~~N~I  243 (369)
                      ++.+|+|.|++.-.......|+
T Consensus       168 p~~~l~VGD~~~Di~aA~~aG~  189 (228)
T d2hcfa1         168 PSQIVIIGDTEHDIRCARELDA  189 (228)
T ss_dssp             GGGEEEEESSHHHHHHHHTTTC
T ss_pred             hhHheeecCChHHHHHHHHcCC
Confidence            7899999999854433334443

>d1in1a_ c.15.1.2 (A:) DNA ligase III alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: BRCT domain
superfamily: BRCT domain
family: DNA ligase
domain: DNA ligase III alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=9.4e-06  Score=62.06  Aligned_cols=54  Identities=15%  Similarity=0.116  Sum_probs=45.8

Q ss_pred             HhhhcCceEEecccCCCCChhHHHHHHhcCCEEEeccCC-CceEEEecCCCccccc
Q 044162          312 SRILMGCTILFGDDDFEELPLTWSRAEEMGAICTLVTDA-SVTHVVSSNTQSETFE  366 (369)
Q Consensus       312 ~~VL~g~~ivFSg~~p~~~p~lw~la~~~GA~v~~~i~~-~vTHvVa~~~gT~K~~  366 (369)
                      ..+|+||+|.+++..|. ...++++..++|++++.+++. .+||+||.+....|++
T Consensus        14 ~diF~G~~~~i~~~~p~-~~~L~r~i~a~GG~~~~~~~~~~vTHvI~~~~~~~~~~   68 (88)
T d1in1a_          14 LDIFTGVRLYLPPSTPD-FSRLRRYFVAFDGDLVQEFDMTSATHVLGSRDKNPAAQ   68 (88)
T ss_dssp             CSSSTTCBCCCCTTSTT-HHHHHHHHHHHTCBCCCTTCCTTCCCEESCCTTCTTSC
T ss_pred             hhHhCCeEEEECCCCCC-HHHHHHHHHHhCCEEeeeccCCCceEEEEcCCCCCCcE
Confidence            46899999999998873 348999999999999999885 5999999987776654

>d2fdra1 c.108.1.6 (A:3-224) Hypothetical protein Atu0790 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Hypothetical protein Atu0790
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.58  E-value=2e-05  Score=67.89  Aligned_cols=91  Identities=15%  Similarity=0.121  Sum_probs=68.5

Q ss_pred             EEEeCccHHHHHHHHhcCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccC--------cccccccccCCCCC
Q 044162          152 LVKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQ--------KERKYLDLVLGQEN  223 (369)
Q Consensus       152 ~vklRPgl~eFL~~ls~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~--------~~~KdL~~l~~~~~  223 (369)
                      .+.+.||+.++|+++..  ...|.|++.+.++..+++.++.. .+|...+++.++...        .+.+-++.++.+++
T Consensus        83 ~~~~~~g~~~~L~~l~~--~~~i~t~~~~~~~~~~l~~~~l~-~~f~~~~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~  159 (222)
T d2fdra1          83 DVKIIDGVKFALSRLTT--PRCICSNSSSHRLDMMLTKVGLK-PYFAPHIYSAKDLGADRVKPKPDIFLHGAAQFGVSPD  159 (222)
T ss_dssp             HCCBCTTHHHHHHHCCS--CEEEEESSCHHHHHHHHHHTTCG-GGTTTCEEEHHHHCTTCCTTSSHHHHHHHHHHTCCGG
T ss_pred             ccchhhhHHHHhhhccc--cceeeeecchhhhhhhhcccccc-cccceeecccccccccccccCHHHHHHHHHhhCCCCc
Confidence            36788999999999864  56799999999999999999998 478777776543221        14555667788999


Q ss_pred             cEEEEeCCccccccCCCceEEe
Q 044162          224 SIVIVDDTESVWGGRVENLITV  245 (369)
Q Consensus       224 ~vvIvDD~~~~w~~~~~N~I~I  245 (369)
                      .+++|+|++.-.......++..
T Consensus       160 ~~l~vgDs~~dv~aA~~aG~~~  181 (222)
T d2fdra1         160 RVVVVEDSVHGIHGARAAGMRV  181 (222)
T ss_dssp             GEEEEESSHHHHHHHHHTTCEE
T ss_pred             eEEEEcCCHHHHHHHHHcCCEE
Confidence            9999999985554434445543

>d2obba1 c.108.1.25 (A:1-122) Hypothetical protein BT0820 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: BT0820-like
domain: Hypothetical protein BT0820
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.55  E-value=0.00011  Score=59.35  Aligned_cols=75  Identities=12%  Similarity=0.059  Sum_probs=51.5

Q ss_pred             eCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCcccccccccCCCCCcEEEEeCCcc
Q 044162          155 LRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKYLDLVLGQENSIVIVDDTES  233 (369)
Q Consensus       155 lRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~~~KdL~~l~~~~~~vvIvDD~~~  233 (369)
                      ..|++-++|+.+. +.+.|+|||+-...+-....+.|.-++.-| +.+-   .......+.-....+-+.--+.|||+.-
T Consensus        22 Pi~~~Ie~l~~L~~~G~~IIi~TaR~~~~~~~t~~wL~~~~i~y-d~i~---~~~~~~~~~~~~~~~Kp~ad~yIDDKai   97 (122)
T d2obba1          22 EIPFAVETLKLLQQEKHRLILWSVREGELLDEAIEWCRARGLEF-YAAN---KDYPEEERDHQGFSRKLKADLFIDDRNV   97 (122)
T ss_dssp             BCTTHHHHHHHHHHTTCEEEECCSCCHHHHHHHHHHHHTTTCCC-SEES---SSSTTC---CCSCCSSCCCSEEECTTST
T ss_pred             ccHHHHHHHHHHHHCCCeEEEEecCCCcchHHHHHHHHHcCCCc-eehh---ccCccCccccceecCCccccEEEeCCcc
Confidence            4589999999996 779999999999999999999998887545 2221   1111122333334445555689999863

>d2fi1a1 c.108.1.3 (A:4-190) Putative hydrolase SP0805 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphonoacetaldehyde hydrolase-like
domain: Putative hydrolase SP0805
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.39  E-value=0.00012  Score=61.68  Aligned_cols=88  Identities=13%  Similarity=0.002  Sum_probs=60.1

Q ss_pred             EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCcE
Q 044162          153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENSI  225 (369)
Q Consensus       153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~v  225 (369)
                      ..+.||+.++|+.++ +.+.++|.|++.+ ++..+++.++.. .+|.. +++.++....      +..-++.++  .+.+
T Consensus        78 ~~~~~gv~~~l~~l~~~g~~~~i~Sn~~~-~~~~~l~~~~l~-~~fd~-i~~~~~~~~~KP~p~~~~~~~~~~~--~~~~  152 (187)
T d2fi1a1          78 PILFEGVSDLLEDISNQGGRHFLVSHRND-QVLEILEKTSIA-AYFTE-VVTSSSGFKRKPNPESMLYLREKYQ--ISSG  152 (187)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEECSSCT-HHHHHHHHTTCG-GGEEE-EECGGGCCCCTTSCHHHHHHHHHTT--CSSE
T ss_pred             CcccchhHHHHHHHHhhhccccccccCcc-chhhhhhhhccc-ccccc-ccccccccccCCCHHHHHHHHHHcC--CCCe
Confidence            456799999999997 5599999998876 555688888877 47864 6666554321      222233444  3559


Q ss_pred             EEEeCCccccccCCCceEEe
Q 044162          226 VIVDDTESVWGGRVENLITV  245 (369)
Q Consensus       226 vIvDD~~~~w~~~~~N~I~I  245 (369)
                      |+|+|++.-.......|+..
T Consensus       153 l~vgDs~~Di~aA~~aG~~~  172 (187)
T d2fi1a1         153 LVIGDRPIDIEAGQAAGLDT  172 (187)
T ss_dssp             EEEESSHHHHHHHHHTTCEE
T ss_pred             EEEeCCHHHHHHHHHcCCEE
Confidence            99999986554434556554

>d1x42a1 c.108.1.1 (A:1-230) Hypothetical protein PH0459 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: HAD-related
domain: Hypothetical protein PH0459
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.97  E-value=0.00032  Score=60.60  Aligned_cols=83  Identities=20%  Similarity=0.173  Sum_probs=66.2

Q ss_pred             EEEeCccHHHHHHHHhcCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCcE
Q 044162          152 LVKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENSI  225 (369)
Q Consensus       152 ~vklRPgl~eFL~~ls~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~v  225 (369)
                      +..+.||+.+||+.+++.|.++|.|++...++..+++.++-. .+|. .+++.++.+..      +.+-++.++.+++.+
T Consensus        98 ~~~~~p~~~~~L~~l~~~~~i~i~Sn~~~~~~~~~l~~~gl~-~~fd-~i~~s~~~~~~KP~~~~~~~~~~~l~~~p~~~  175 (230)
T d1x42a1          98 YGELYPEVVEVLKSLKGKYHVGMITDSDTEYLMAHLDALGIK-DLFD-SITTSEEAGFFKPHPRIFELALKKAGVKGEEA  175 (230)
T ss_dssp             HCCBCTTHHHHHHHHBTTBEEEEEESSCHHHHHHHHHHHTCG-GGCS-EEEEHHHHTBCTTSHHHHHHHHHHHTCCGGGE
T ss_pred             hCcccccHHHHHHHhhccCceeeeeccccccchhhhcccccc-cccc-cccccccccccchhhHHHHHHHhhhccccccc
Confidence            466789999999999989999999999999999999999887 4785 56666655431      445566778888999


Q ss_pred             EEEeCCc--cccc
Q 044162          226 VIVDDTE--SVWG  236 (369)
Q Consensus       226 vIvDD~~--~~w~  236 (369)
                      ++|+|++  +...
T Consensus       176 l~vgD~~~~Di~~  188 (230)
T d1x42a1         176 VYVGDNPVKDCGG  188 (230)
T ss_dssp             EEEESCTTTTHHH
T ss_pred             ceeecCcHhHHHH
Confidence            9998875  3554

>d2o2xa1 c.108.1.19 (A:8-216) Hypothetical protein Mll2559 {Mesorhizobium loti [TaxId: 381]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Histidinol phosphatase-like
domain: Hypothetical protein Mll2559
species: Mesorhizobium loti [TaxId: 381]

Probab=96.97  E-value=0.00031  Score=61.35  Aligned_cols=78  Identities=17%  Similarity=0.134  Sum_probs=49.7

Q ss_pred             EeCccHHHHHHHHh-cCccEEEecCCc------------HHHHHHHHHHhCCCCCcccceEEeec------------ccc
Q 044162          154 KLRPFVRSFLEEAS-RLFEISVCTLGN------------REYATRAVKLLDPDCKYFNSRIITRE------------DFK  208 (369)
Q Consensus       154 klRPgl~eFL~~ls-~~yEi~I~T~g~------------~~YA~~i~~~lDp~~~~f~~Ri~srd------------~~~  208 (369)
                      ++-||+.+.|+.+. +.|.++|.|+.+            ....+.+.+.+...|.++. .++...            +|.
T Consensus        48 ~l~pgv~e~L~~L~~~G~~l~IvTNQ~gi~~g~~~~~~~~~~~~~~~~~l~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~  126 (209)
T d2o2xa1          48 VLRPQMLPAIATANRAGIPVVVVTNQSGIARGYFGWSAFAAVNGRVLELLREEGVFVD-MVLACAYHEAGVGPLAIPDHP  126 (209)
T ss_dssp             CBCGGGHHHHHHHHHHTCCEEEEEECHHHHTTSCCHHHHHHHHHHHHHHHHHTTCCCS-EEEEECCCTTCCSTTCCSSCT
T ss_pred             EecccHHHHHHHHHhhCCeEEEecccccchhhhhhhhhhhhhhhHHHHHhhhcccccc-eEEEecccccccccccccccc
Confidence            45699999999998 579999999843            2334445555555554332 233221            121


Q ss_pred             C------cccccccccCCCCCcEEEEeCCc
Q 044162          209 Q------KERKYLDLVLGQENSIVIVDDTE  232 (369)
Q Consensus       209 ~------~~~KdL~~l~~~~~~vvIvDD~~  232 (369)
                      .      +..+-++.++.+.+.+++|-|+.
T Consensus       127 ~rKP~p~ml~~a~~~~~i~~~~~~~VGD~~  156 (209)
T d2o2xa1         127 MRKPNPGMLVEAGKRLALDLQRSLIVGDKL  156 (209)
T ss_dssp             TSTTSCHHHHHHHHHHTCCGGGCEEEESSH
T ss_pred             cccccchhhhHhHHHhCCCccceEEeCCCH
Confidence            1      12233455677899999999986

>d1cr6a1 c.108.1.2 (A:4-225) Epoxide hydrolase, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: YihX-like
domain: Epoxide hydrolase, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.95  E-value=0.00022  Score=60.68  Aligned_cols=89  Identities=13%  Similarity=0.068  Sum_probs=60.1

Q ss_pred             EEeCccHHHHHHHHh-cCccEEEecCC----cHHHHHHHHHHhCCCCCcccceEEeeccccC------cccccccccCCC
Q 044162          153 VKLRPFVRSFLEEAS-RLFEISVCTLG----NREYATRAVKLLDPDCKYFNSRIITREDFKQ------KERKYLDLVLGQ  221 (369)
Q Consensus       153 vklRPgl~eFL~~ls-~~yEi~I~T~g----~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~------~~~KdL~~l~~~  221 (369)
                      ++.+|++.++|..+. +.+.+.|.|++    ...+...+....+.. .||. .+++.++...      .+.+-++.++-+
T Consensus        96 ~~~~~~~~~~L~~L~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~l~-~~fd-~i~~s~~~~~~KP~p~~~~~~~~~~~v~  173 (222)
T d1cr6a1          96 RSINRPMLQAAIALKKKGFTTCIVTNNWLDDGDKRDSLAQMMCELS-QHFD-FLIESCQVGMIKPEPQIYNFLLDTLKAK  173 (222)
T ss_dssp             CEECHHHHHHHHHHHHTTCEEEEEECCCCCCSSSHHHHHHHHHHHG-GGCS-EEEEHHHHSCCTTCHHHHHHHHHHHTSC
T ss_pred             CCCCccHHHHHHHHHhcCCceEEeeccccccHHHHHHHHHHhcChH-hhhc-eeeehhhccCCCCChHHHHHHHHHhCCC
Confidence            578999999999997 56899999974    344555555555555 4785 4555555432      145556677888


Q ss_pred             CCcEEEEeCCccccccCCCceE
Q 044162          222 ENSIVIVDDTESVWGGRVENLI  243 (369)
Q Consensus       222 ~~~vvIvDD~~~~w~~~~~N~I  243 (369)
                      ++.+|+|+|+..-.......|+
T Consensus       174 p~~~l~IgD~~~Di~~A~~aG~  195 (222)
T d1cr6a1         174 PNEVVFLDDFGSNLKPARDMGM  195 (222)
T ss_dssp             TTSEEEEESSSTTTHHHHHHTC
T ss_pred             cceEEEEECCHHHHHHHHHcCC
Confidence            8999999998644433233343

>d2b0ca1 c.108.1.2 (A:8-204) Putative phosphatase YihX {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: YihX-like
domain: Putative phosphatase YihX
species: Escherichia coli [TaxId: 562]

Probab=96.89  E-value=5e-05  Score=62.61  Aligned_cols=92  Identities=18%  Similarity=0.119  Sum_probs=64.6

Q ss_pred             eEEEEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHh-CCCCCcccceEEeeccccCc------ccccccccCCC
Q 044162          150 VLLVKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLL-DPDCKYFNSRIITREDFKQK------ERKYLDLVLGQ  221 (369)
Q Consensus       150 ~~~vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~l-Dp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~  221 (369)
                      ..+..++|++.+++..+. +.+.+.|.|++....+...+..+ +.. .+|.. +++.++.+..      +..-++.++.+
T Consensus        80 ~~~~~~~~~~~~l~~~l~~~~~~~~i~t~~~~~~~~~~~~~~~~l~-~~fd~-v~~s~~~~~~Kp~~~~~~~~~~~~~~~  157 (197)
T d2b0ca1          80 AVFVALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEIR-DAADH-IYLSQDLGMRKPEARIYQHVLQAEGFS  157 (197)
T ss_dssp             TCEEEECHHHHHHHHHHHHTTCEEEEEECCCCCTTSCCGGGCHHHH-HHCSE-EEEHHHHTCCTTCHHHHHHHHHHHTCC
T ss_pred             HhccccCchhHHHHHHHHhcCCeEEEEeCccHHHHHHHHHHcccch-hhccc-eeecccccccccchHHHHHHHHhcCCC
Confidence            567899999999998885 88999999999988877665543 333 35754 5545444321      34456677888


Q ss_pred             CCcEEEEeCCccccccCCCceE
Q 044162          222 ENSIVIVDDTESVWGGRVENLI  243 (369)
Q Consensus       222 ~~~vvIvDD~~~~w~~~~~N~I  243 (369)
                      .+.+|+|+|++.-......-|+
T Consensus       158 ~~~~l~vgDs~~di~~A~~aG~  179 (197)
T d2b0ca1         158 PSDTVFFDDNADNIEGANQLGI  179 (197)
T ss_dssp             GGGEEEEESCHHHHHHHHTTTC
T ss_pred             CCeEEEEeCCHHHHHHHHHcCC
Confidence            9999999999865543333443

>d2fpwa1 c.108.1.19 (A:3-163) Histidine biosynthesis bifunctional protein HisB, phosphatase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Histidinol phosphatase-like
domain: Histidine biosynthesis bifunctional protein HisB, phosphatase domain
species: Escherichia coli [TaxId: 562]

Probab=96.72  E-value=0.0012  Score=55.01  Aligned_cols=79  Identities=10%  Similarity=0.161  Sum_probs=46.2

Q ss_pred             EEeCccHHHHHHHHh-cCccEEEecCCc--------HHHH----HHHHHHhCCCCCcccceEE-----eeccccC-----
Q 044162          153 VKLRPFVRSFLEEAS-RLFEISVCTLGN--------REYA----TRAVKLLDPDCKYFNSRII-----TREDFKQ-----  209 (369)
Q Consensus       153 vklRPgl~eFL~~ls-~~yEi~I~T~g~--------~~YA----~~i~~~lDp~~~~f~~Ri~-----srd~~~~-----  209 (369)
                      +++-||+.+.|+.+. +.|.++|+|+.+        +.-.    ..+.+.+...+..+. .++     +.++|..     
T Consensus        29 ~~~~pgv~e~L~~L~~~g~~l~i~TNq~~ia~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~i~~~~~~~~~~~~~~KP~p  107 (161)
T d2fpwa1          29 LAFEPGVIPQLLKLQKAGYKLVMITNQDGLGTQSFPQADFDGPHNLMMQIFTSQGVQFD-EVLICPHLPADECDCRKPKV  107 (161)
T ss_dssp             CCBCTTHHHHHHHHHHTTEEEEEEEECTTTTSTTSCHHHHHHHHHHHHHHHHHTTCCEE-EEEEECCCGGGCCSSSTTSS
T ss_pred             ceECccHHHHHHHHHHcCCceeeecccccchhHHHHHHHhhhhhhhhhhhccccccccc-eeeecccccccccccccccc
Confidence            466799999999998 579999999864        1111    123344444443222 222     1233332     


Q ss_pred             -cccccccccCCCCCcEEEEeCCc
Q 044162          210 -KERKYLDLVLGQENSIVIVDDTE  232 (369)
Q Consensus       210 -~~~KdL~~l~~~~~~vvIvDD~~  232 (369)
                       ....-++.++-+++.+++|-|+.
T Consensus       108 ~~~~~~~~~~~id~~~~~~IGD~~  131 (161)
T d2fpwa1         108 KLVERYLAEQAMDRANSYVIGDRA  131 (161)
T ss_dssp             GGGGGGC----CCGGGCEEEESSH
T ss_pred             HHHHHHHHhcCCChhcEEEECCCH
Confidence             13344455667889999999986

>d1nnla_ c.108.1.4 (A:) Phosphoserine phosphatase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphoserine phosphatase
domain: Phosphoserine phosphatase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.00068  Score=58.76  Aligned_cols=94  Identities=14%  Similarity=0.129  Sum_probs=59.4

Q ss_pred             EEEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCC-CcccceEEeecc-------cc----Ccccc--ccc
Q 044162          152 LVKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDC-KYFNSRIITRED-------FK----QKERK--YLD  216 (369)
Q Consensus       152 ~vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~-~~f~~Ri~srd~-------~~----~~~~K--dL~  216 (369)
                      .++++||+.++++++. +.+.++|-|++...+++.+++.++-+. .+|.+++--..+       ..    ...-|  -+.
T Consensus        80 ~~~l~pg~~~~i~~lk~~G~~~~ivS~~~~~~v~~i~~~lgi~~~~v~an~~~~~~~G~~~g~~~~~p~~~~~~K~~~v~  159 (217)
T d1nnla_          80 PPHLTPGIRELVSRLQERNVQVFLISGGFRSIVEHVASKLNIPATNVFANRLKFYFNGEYAGFDETQPTAESGGKGKVIK  159 (217)
T ss_dssp             CCCBCTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHTTCCGGGEEEECEEECTTSCEEEECTTSGGGSTTHHHHHHH
T ss_pred             ccccCHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhCCcccceeeeeeeeeehhccccceeeeeeeccchHHHHHH
Confidence            3668999999999998 579999999999999999999987652 234333321100       00    00001  011


Q ss_pred             cc--CCCCCcEEEEeCCccccccCCCceEEe
Q 044162          217 LV--LGQENSIVIVDDTESVWGGRVENLITV  245 (369)
Q Consensus       217 ~l--~~~~~~vvIvDD~~~~w~~~~~N~I~I  245 (369)
                      .+  ..+.+.++.|-|+..=.+.-...++.|
T Consensus       160 ~~~~~~~~~~~~~vGDs~~Di~~~~~ag~~v  190 (217)
T d1nnla_         160 LLKEKFHFKKIIMIGDGATDMEACPPADAFI  190 (217)
T ss_dssp             HHHHHHCCSCEEEEESSHHHHTTTTTSSEEE
T ss_pred             HHHhccCccccEEEEeCHhhHHHHHhCCceE
Confidence            11  135677888888885555444455544

>d1swva_ c.108.1.3 (A:) Phosphonoacetaldehyde hydrolase {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphonoacetaldehyde hydrolase-like
domain: Phosphonoacetaldehyde hydrolase
species: Bacillus cereus [TaxId: 1396]

Probab=96.37  E-value=0.00089  Score=58.55  Aligned_cols=83  Identities=19%  Similarity=0.030  Sum_probs=66.0

Q ss_pred             EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccC------cccccccccCC-CCCc
Q 044162          153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQ------KERKYLDLVLG-QENS  224 (369)
Q Consensus       153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~------~~~KdL~~l~~-~~~~  224 (369)
                      +.+.||+.++|+.+. +.+.+.|.|++.+.+++.+++.++-.+ +|.+.+++.++...      .+.+-+.+++. +.+.
T Consensus        98 ~~~~~g~~~~L~~Lk~~g~~i~i~Tn~~~~~~~~~l~~~~l~~-~f~d~~~~~d~~~~~KP~p~~~~~~~~~l~~~p~~~  176 (257)
T d1swva_          98 ASPINGVKEVIASLRERGIKIGSTTGYTREMMDIVAKEAALQG-YKPDFLVTPDDVPAGRPYPWMCYKNAMELGVYPMNH  176 (257)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEBCSSCHHHHHHHHHHHHHTT-CCCSCCBCGGGSSCCTTSSHHHHHHHHHHTCCSGGG
T ss_pred             CccCCcHHHHHHHHHhcccceeecCCCchhhHHHHHHHHhhcc-cccccccccccccccccChHHHHHHHHHhCCCCcce
Confidence            468899999999997 559999999999999999999988774 56566777777653      14566677776 5689


Q ss_pred             EEEEeCCccccc
Q 044162          225 IVIVDDTESVWG  236 (369)
Q Consensus       225 vvIvDD~~~~w~  236 (369)
                      +|+|+|+..-..
T Consensus       177 ~v~VgDs~~Di~  188 (257)
T d1swva_         177 MIKVGDTVSDMK  188 (257)
T ss_dssp             EEEEESSHHHHH
T ss_pred             EEEEeCChhhHH
Confidence            999999975443

>d2gfha1 c.108.1.6 (A:1-247) N-acylneuraminate-9-phosphatase NANP {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: N-acylneuraminate-9-phosphatase NANP
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.23  E-value=0.0031  Score=54.35  Aligned_cols=79  Identities=23%  Similarity=0.274  Sum_probs=63.4

Q ss_pred             EEeCccHHHHHHHHhcCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCcEE
Q 044162          153 VKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENSIV  226 (369)
Q Consensus       153 vklRPgl~eFL~~ls~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~vv  226 (369)
                      ..+.||+.++|+.+++.|.++|.|++...++..+++..+.. .+|. .+++.++....      +.+-++.++.+.+.++
T Consensus       108 ~~~~~~~~~~L~~L~~~~~l~i~Tn~~~~~~~~~l~~~gl~-~~fd-~i~~s~~~~~~KP~p~~~~~~~~~~~~~~~~~l  185 (247)
T d2gfha1         108 MILADDVKAMLTELRKEVRLLLLTNGDRQTQREKIEACACQ-SYFD-AIVIGGEQKEEKPAPSIFYHCCDLLGVQPGDCV  185 (247)
T ss_dssp             CCCCHHHHHHHHHHHTTSEEEEEECSCHHHHHHHHHHHTCG-GGCS-EEEEGGGSSSCTTCHHHHHHHHHHHTCCGGGEE
T ss_pred             CccCccHHHHHHHhhcccceEEeecccchhhhhhhhhcccc-cccc-ccccccccccchhhhhhHHHHHHHhhcCHHhcc
Confidence            45679999999999999999999999999999999999876 5785 46656655431      3444566788889999


Q ss_pred             EEeCCcc
Q 044162          227 IVDDTES  233 (369)
Q Consensus       227 IvDD~~~  233 (369)
                      +|.|+..
T Consensus       186 ~iGD~~~  192 (247)
T d2gfha1         186 MVGDTLE  192 (247)
T ss_dssp             EEESCTT
T ss_pred             eeccChH
Confidence            9999863

>d1xpja_ c.108.1.18 (A:) Hypothetical protein VC0232 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Hypothetical protein VC0232
domain: Hypothetical protein VC0232
species: Vibrio cholerae [TaxId: 666]

Probab=96.22  E-value=0.0014  Score=52.76  Aligned_cols=48  Identities=25%  Similarity=0.133  Sum_probs=37.6

Q ss_pred             EeCccHHHHHHHH-hcCccEEEecCCc------------HHHHHHHHHHhCCCCCcccceEE
Q 044162          154 KLRPFVRSFLEEA-SRLFEISVCTLGN------------REYATRAVKLLDPDCKYFNSRII  202 (369)
Q Consensus       154 klRPgl~eFL~~l-s~~yEi~I~T~g~------------~~YA~~i~~~lDp~~~~f~~Ri~  202 (369)
                      +..|++.++|..+ ++.+.|+|||+-.            ..+.+...+.|.-.|--| ++++
T Consensus        24 ~P~~~~Ie~l~~l~~~G~~Iii~TaR~~~~~~~~~~~~~~~~~~~T~~wL~~~gI~Y-d~Li   84 (124)
T d1xpja_          24 LPRLDVIEQLREYHQLGFEIVISTARNMRTYEGNVGKINIHTLPIITEWLDKHQVPY-DEIL   84 (124)
T ss_dssp             CBCHHHHHHHHHHHHTTCEEEEEECTTTTTTTTCHHHHHHHTHHHHHHHHHHTTCCC-SEEE
T ss_pred             CcCHHHHHHHHHHHHCCCEEEEEecCCccccCCcHHHHHHHHHHHHHHHHHHcCCCc-eEEE
Confidence            5579999999999 5889999999983            456677788888887544 4555

>d2bdua1 c.108.1.21 (A:7-297) Cytosolic 5'-nucleotidase III {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Pyrimidine 5'-nucleotidase (UMPH-1)
domain: Cytosolic 5'-nucleotidase III
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.89  E-value=0.0079  Score=54.89  Aligned_cols=95  Identities=15%  Similarity=0.153  Sum_probs=63.3

Q ss_pred             EEEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCC---CcccceEEeecccc---------Cccccc----
Q 044162          152 LVKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDC---KYFNSRIITREDFK---------QKERKY----  214 (369)
Q Consensus       152 ~vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~---~~f~~Ri~srd~~~---------~~~~Kd----  214 (369)
                      -+.+|||+.+|++.+. ..+.++|+|+|-..+++++++.+...-   +++.+++...++..         ..+.|.    
T Consensus       133 ~i~Lr~G~~e~~~~l~~~~i~~~IvSgG~~~~ie~vl~~lg~~~~ni~I~sN~l~f~~~~~~~~~~~~~i~~~~K~~~~~  212 (291)
T d2bdua1         133 DVMLKEGYENFFGKLQQHGIPVFIFSAGIGDVLEEVIRQAGVYHSNVKVVSNFMDFDENGVLKGFKGELIHVFNKHDGAL  212 (291)
T ss_dssp             CCCBCBTHHHHHHHHHHHTCCEEEEEEEEHHHHHHHHHHTTCCBTTEEEEEECEEECTTSBEEEECSSCCCTTCHHHHHH
T ss_pred             CCCcccCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHcCCCccCceEEeeEEEEeCCeeEeeccCCccccccCcchhh
Confidence            4789999999999997 788999999999999999999886442   24444433222211         111121    


Q ss_pred             --cc--ccCCCCCcEEEEeCCcccccc-----CCCceEEeC
Q 044162          215 --LD--LVLGQENSIVIVDDTESVWGG-----RVENLITVG  246 (369)
Q Consensus       215 --L~--~l~~~~~~vvIvDD~~~~w~~-----~~~N~I~I~  246 (369)
                        ..  ....+.+.+|++-|+..=+..     +.+|++.|-
T Consensus       213 ~~~~~~~~~~~~~~vI~iGDs~~Dl~Ma~g~~~~~~~l~ig  253 (291)
T d2bdua1         213 KNTDYFSQLKDNSNIILLGDSQGDLRMADGVANVEHILKIG  253 (291)
T ss_dssp             TTHHHHHHTTTCCEEEEEESSSGGGGTTTTCSCCSEEEEEE
T ss_pred             hhHHHHhccCCcCcEEEEeCCHhHHHHHhCCccccceeeee
Confidence              11  123466789999998754432     356777664

>d1zs9a1 c.108.1.22 (A:4-256) E-1 enzyme {Human(Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Enolase-phosphatase E1
domain: E-1 enzyme
species: Human(Homo sapiens) [TaxId: 9606]

Probab=95.66  E-value=0.0057  Score=51.77  Aligned_cols=84  Identities=11%  Similarity=-0.050  Sum_probs=63.9

Q ss_pred             EEEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccC------cccccccccCCCCCc
Q 044162          152 LVKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQ------KERKYLDLVLGQENS  224 (369)
Q Consensus       152 ~vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~------~~~KdL~~l~~~~~~  224 (369)
                      ....+||+.++|+++. +.+.++|.|++.+..+..+++.+.-.. +|.....+-++...      .+..-+++++.+++.
T Consensus       125 ~~~~~pg~~e~l~~L~~~g~~l~i~Tn~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~KP~p~~~~~~~~~~~~~p~~  203 (253)
T d1zs9a1         125 KAEFFADVVPAVRKWREAGMKVYIYSSGSVEAQKLLFGHSTEGD-ILELVDGHFDTKIGHKVESESYRKIADSIGCSTNN  203 (253)
T ss_dssp             CBCCCTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHTBTTBC-CGGGCSEEECGGGCCTTCHHHHHHHHHHHTSCGGG
T ss_pred             ccccCCCHHHHHHHHhhccCceeecCCCcHHHHHHHHHHcCcch-hhhhcceeeccccccCCCcHHHHHHHHHhCCCcCc
Confidence            4667899999999996 579999999999999999998877654 66544333333321      245667778889999


Q ss_pred             EEEEeCCccccc
Q 044162          225 IVIVDDTESVWG  236 (369)
Q Consensus       225 vvIvDD~~~~w~  236 (369)
                      +++|+|+..-..
T Consensus       204 ~l~vgD~~~dv~  215 (253)
T d1zs9a1         204 ILFLTDVTREAS  215 (253)
T ss_dssp             EEEEESCHHHHH
T ss_pred             EEEEeCCHHHHH
Confidence            999999985543

>d1yj5a1 c.108.1.9 (A:144-338) 5' polynucleotide kinase-3' phosphatase, middle domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: phosphatase domain of polynucleotide kinase
domain: 5' polynucleotide kinase-3' phosphatase, middle domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.41  E-value=0.0058  Score=52.62  Aligned_cols=60  Identities=18%  Similarity=0.129  Sum_probs=42.7

Q ss_pred             hhcCCceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHHHHHHHh
Q 044162           88 LLRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEAS  167 (369)
Q Consensus        88 ll~~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~eFL~~ls  167 (369)
                      .++.++.+++||+||||+..........                      ..          .=|..+.|++.+-|+.++
T Consensus        16 ~~~~~~Kia~fDrDGtLik~~~~~~~~~----------------------~~----------~d~~~l~~~v~~~i~~L~   63 (195)
T d1yj5a1          16 GVKPQGKVAAFDLDGTLITTRSGKVFPT----------------------SP----------SDWRILYPEIPKKLQELA   63 (195)
T ss_dssp             TCCCCSCEEEECSBTTTEECSSSCSSCS----------------------ST----------TCCEESCTTHHHHHHHHH
T ss_pred             CCCCcCcEEEEECCCceEeeCCCCcCCC----------------------Ch----------hhceeccCCHHHHHHHHH
Confidence            4567788999999999998654221000                      00          113456899999999997


Q ss_pred             -cCccEEEecCCc
Q 044162          168 -RLFEISVCTLGN  179 (369)
Q Consensus       168 -~~yEi~I~T~g~  179 (369)
                       +.|.++|.|+.+
T Consensus        64 ~~gy~iiIvTNQ~   76 (195)
T d1yj5a1          64 AEGYKLVIFTNQM   76 (195)
T ss_dssp             HHTCEEEEEEECH
T ss_pred             hCCcEEEEecCcc
Confidence             679999999953

>d2gmwa1 c.108.1.19 (A:24-205) D,D-heptose 1,7-bisphosphate phosphatase GmhB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Histidinol phosphatase-like
domain: D,D-heptose 1,7-bisphosphate phosphatase GmhB
species: Escherichia coli [TaxId: 562]

Probab=95.33  E-value=0.012  Score=49.08  Aligned_cols=27  Identities=19%  Similarity=0.055  Sum_probs=23.1

Q ss_pred             EeCccHHHHHHHHh-cCccEEEecCCcH
Q 044162          154 KLRPFVRSFLEEAS-RLFEISVCTLGNR  180 (369)
Q Consensus       154 klRPgl~eFL~~ls-~~yEi~I~T~g~~  180 (369)
                      ++=||+.+.|+.+. +.|.++|.|+.+.
T Consensus        27 ~~~~gv~e~l~~L~~~g~~~~ivTNq~~   54 (182)
T d2gmwa1          27 EFIDGVIDAMRELKKMGFALVVVTNQSG   54 (182)
T ss_dssp             CBCTTHHHHHHHHHHTTCEEEEEEECTH
T ss_pred             eECCCHHHHHHHHhhcCchhhhhhccch
Confidence            44599999999998 6799999999763

>d2amya1 c.108.1.10 (A:4-246) Phosphomannomutase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphomannomutase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.22  E-value=0.013  Score=49.32  Aligned_cols=31  Identities=16%  Similarity=0.181  Sum_probs=20.7

Q ss_pred             ccHHHHHHHHhcCccEEEecCCcHHHHHHHH
Q 044162          157 PFVRSFLEEASRLFEISVCTLGNREYATRAV  187 (369)
Q Consensus       157 Pgl~eFL~~ls~~yEi~I~T~g~~~YA~~i~  187 (369)
                      |...+.|+++.+...++|.|.+....+...+
T Consensus        23 ~~~~~al~~l~~~g~~~i~Tgr~~~~~~~~~   53 (243)
T d2amya1          23 KEMDDFLQKLRQKIKIGVVGGSDFEKVQEQL   53 (243)
T ss_dssp             HHHHHHHHHHTTTSEEEEECSSCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCEEEEcCCChHHhHHHH
Confidence            5567777888777767777776655555444

>d1zrna_ c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Pseudomonas sp., strain YL [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: HAD-related
domain: L-2-Haloacid dehalogenase, HAD
species: Pseudomonas sp., strain YL [TaxId: 306]

Probab=94.62  E-value=0.029  Score=46.75  Aligned_cols=79  Identities=11%  Similarity=0.065  Sum_probs=63.6

Q ss_pred             EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCcE
Q 044162          153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENSI  225 (369)
Q Consensus       153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~v  225 (369)
                      ....|++.++|+.+. +.+.+.|.|++...++..+++..... .+|.. +++.++....      +.+-++.++.+++.+
T Consensus        92 ~~~~~~~~~~l~~l~~~~~~~~i~tn~~~~~~~~~~~~~~~~-~~fd~-~~~s~~~~~~KP~p~~~~~~~~~~g~~p~e~  169 (220)
T d1zrna_          92 LAPFSEVPDSLRELKRRGLKLAILSNGSPQSIDAVVSHAGLR-DGFDH-LLSVDPVQVYKPDNRVYELAEQALGLDRSAI  169 (220)
T ss_dssp             CEECTTHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCG-GGCSE-EEESGGGTCCTTSHHHHHHHHHHHTSCGGGE
T ss_pred             ccccchhHHHHHHHHhcCCeEEeecchHHHHHHHHHhhcccc-ccccc-eeeeeeeeccccHHHHHHHHHHHhCCCCceE
Confidence            557899999999995 77899999999999999999988877 47754 5555555431      445577788899999


Q ss_pred             EEEeCCcc
Q 044162          226 VIVDDTES  233 (369)
Q Consensus       226 vIvDD~~~  233 (369)
                      ++|+|++.
T Consensus       170 l~VgD~~~  177 (220)
T d1zrna_         170 LFVASNAW  177 (220)
T ss_dssp             EEEESCHH
T ss_pred             EEEecChH
Confidence            99999874

>d1xvia_ c.108.1.10 (A:) Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP)
species: Escherichia coli [TaxId: 562]

Probab=94.56  E-value=0.036  Score=46.24  Aligned_cols=38  Identities=11%  Similarity=0.046  Sum_probs=30.0

Q ss_pred             ccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCC
Q 044162          157 PFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDC  194 (369)
Q Consensus       157 Pgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~  194 (369)
                      |...+.|+++. +...+++-|.-+...+..+++.+.-++
T Consensus        24 ~~~~~al~~l~~~Gi~~~i~TGR~~~~~~~~~~~~~~~~   62 (232)
T d1xvia_          24 QPAAPWLTRLREANVPVILCSSKTSAEMLYLQKTLGLQG   62 (232)
T ss_dssp             CTTHHHHHHHHHTTCCEEEECSSCHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHHHCCCEEEEEeCCChhhchhHHHHhccCC
Confidence            44567777776 668899999999999999998887654

>d2fuea1 c.108.1.10 (A:13-256) Phosphomannomutase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphomannomutase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.11  E-value=0.032  Score=46.57  Aligned_cols=29  Identities=21%  Similarity=0.205  Sum_probs=17.3

Q ss_pred             ccHHHHHHHHhcCccEEEecCCcHHHHHH
Q 044162          157 PFVRSFLEEASRLFEISVCTLGNREYATR  185 (369)
Q Consensus       157 Pgl~eFL~~ls~~yEi~I~T~g~~~YA~~  185 (369)
                      |...+-|+++.+.--+++.|.+....+..
T Consensus        21 ~~~~~~i~~l~~~g~~~i~tgrr~~~~~~   49 (244)
T d2fuea1          21 PEVAAFLQKLRSRVQIGVVGGSDYCKIAE   49 (244)
T ss_dssp             HHHHHHHHHHTTTSEEEEECSSCHHHHHH
T ss_pred             HHHHHHHHHHHhCCCEEEEecCChhhhhh
Confidence            33456677777666666777665444443

>d1rkqa_ c.108.1.10 (A:) Hypothetical protein YidA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Hypothetical protein YidA
species: Escherichia coli [TaxId: 562]

Probab=93.55  E-value=0.029  Score=48.60  Aligned_cols=37  Identities=19%  Similarity=0.136  Sum_probs=28.9

Q ss_pred             ccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCC
Q 044162          157 PFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPD  193 (369)
Q Consensus       157 Pgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~  193 (369)
                      |...+.|+++. +...++|.|--+...+..+++.+.-.
T Consensus        24 ~~~~~al~~L~~~gi~v~i~TGR~~~~~~~~~~~l~l~   61 (271)
T d1rkqa_          24 PAVKNAIAAARARGVNVVLTTGRPYAGVHNYLKELHME   61 (271)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSSCGGGTHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHhcCc
Confidence            55667788876 55899999988888998888887543

>d1o08a_ c.108.1.6 (A:) beta-Phosphoglucomutase {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: beta-Phosphoglucomutase
species: Lactococcus lactis [TaxId: 1358]

Probab=93.05  E-value=0.035  Score=46.51  Aligned_cols=79  Identities=10%  Similarity=0.136  Sum_probs=59.2

Q ss_pred             EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCcE
Q 044162          153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENSI  225 (369)
Q Consensus       153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~v  225 (369)
                      ..+-||+.++|+.+. ..+.+.+.|++  .++..+++.++-.+ +|.. +++.++....      +.+-++.++.+.+.+
T Consensus        90 ~~~~~g~~~~l~~l~~~~~~i~i~s~~--~~~~~~l~~~~l~~-~f~~-i~~~~~~~~~KP~~~~~~~~l~~~~i~~~~~  165 (221)
T d1o08a_          90 ADVYPGILQLLKDLRSNKIKIALASAS--KNGPFLLERMNLTG-YFDA-IADPAEVAASKPAPDIFIAAAHAVGVAPSES  165 (221)
T ss_dssp             GGBCTTHHHHHHHHHHTTCEEEECCSC--TTHHHHHHHTTCGG-GCSE-ECCTTTSSSCTTSTHHHHHHHHHTTCCGGGE
T ss_pred             ccccCCceeccccccccccceEEEeec--chhhHHHHhhcccc-cccc-ccccccccccccChHHHHHHHHHcCCCCceE
Confidence            557799999999997 56677787775  45788899988875 7854 5555554431      456677788899999


Q ss_pred             EEEeCCcccc
Q 044162          226 VIVDDTESVW  235 (369)
Q Consensus       226 vIvDD~~~~w  235 (369)
                      |+|||++.-.
T Consensus       166 l~VgD~~~di  175 (221)
T d1o08a_         166 IGLEDSQAGI  175 (221)
T ss_dssp             EEEESSHHHH
T ss_pred             EEEecCHHHH
Confidence            9999998444

>d2c4na1 c.108.1.14 (A:1-250) NagD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: NagD
species: Escherichia coli [TaxId: 562]

Probab=92.92  E-value=0.035  Score=48.15  Aligned_cols=30  Identities=13%  Similarity=0.064  Sum_probs=20.5

Q ss_pred             ccHHHHHHHHh-cCccEEEecCCcHHHHHHH
Q 044162          157 PFVRSFLEEAS-RLFEISVCTLGNREYATRA  186 (369)
Q Consensus       157 Pgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i  186 (369)
                      |+..+|++.+. ..+.+++.|+++....+.+
T Consensus        22 ~~a~e~i~~l~~~g~~~~~~TN~~~~~~~~~   52 (250)
T d2c4na1          22 PGAAEFLHGIMDKGLPLVLLTNYPSQTGQDL   52 (250)
T ss_dssp             TTHHHHHHHHHHTTCCEEEEESCCSCCHHHH
T ss_pred             ccHHHHHHHHHHCCCcEEEEeCCCCCCHHHH
Confidence            67778888886 5688888887664333333

>d1wr8a_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphoglycolate phosphatase, PGPase
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=92.63  E-value=0.1  Score=43.26  Aligned_cols=38  Identities=16%  Similarity=0.062  Sum_probs=28.4

Q ss_pred             ccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCC
Q 044162          157 PFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDC  194 (369)
Q Consensus       157 Pgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~  194 (369)
                      |...+.|+++. +...+++.|.-+...+..++..+...+
T Consensus        22 ~~~~~~l~~l~~~gi~v~~~TGR~~~~~~~~~~~~~~~~   60 (230)
T d1wr8a_          22 EKALEAIRRAESLGIPIMLVTGNTVQFAEAASILIGTSG   60 (230)
T ss_dssp             HHHHHHHHHHHHTTCCEEEECSSCHHHHHHHHHHHTCCS
T ss_pred             HHHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHhcCCCc
Confidence            44556666664 557888889888888999888887765

>d1vjra_ c.108.1.14 (A:) Hypothetical protein TM1742 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: Hypothetical protein TM1742
species: Thermotoga maritima [TaxId: 2336]

Probab=92.50  E-value=0.043  Score=47.59  Aligned_cols=23  Identities=22%  Similarity=0.143  Sum_probs=16.2

Q ss_pred             ccHHHHHHHHh-cCccEEEecCCc
Q 044162          157 PFVRSFLEEAS-RLFEISVCTLGN  179 (369)
Q Consensus       157 Pgl~eFL~~ls-~~yEi~I~T~g~  179 (369)
                      |++.++|+.+. +...+++.|++.
T Consensus        26 ~~a~e~l~~l~~~g~~~~~~TN~~   49 (261)
T d1vjra_          26 PGSLEFLETLKEKNKRFVFFTNNS   49 (261)
T ss_dssp             TTHHHHHHHHHHTTCEEEEEESCT
T ss_pred             chHHHHHHHHHHcCCCEEEEeCCC
Confidence            67777777776 456777777654

>d1s2oa1 c.108.1.10 (A:1-244) Sucrose-phosphatase Slr0953 {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Sucrose-phosphatase Slr0953
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=92.49  E-value=0.041  Score=47.01  Aligned_cols=33  Identities=15%  Similarity=0.116  Sum_probs=24.7

Q ss_pred             HHHHHHHhcCccEEEecCCcHHHHHHHHHHhCC
Q 044162          160 RSFLEEASRLFEISVCTLGNREYATRAVKLLDP  192 (369)
Q Consensus       160 ~eFL~~ls~~yEi~I~T~g~~~YA~~i~~~lDp  192 (369)
                      +.+++..++...++|-|.-+...+..+++.+..
T Consensus        25 ~~~~~~~~~g~~v~i~TGR~~~~~~~~~~~~~~   57 (244)
T d1s2oa1          25 QEYLGDRRGNFYLAYATGRSYHSARELQKQVGL   57 (244)
T ss_dssp             HHHHHTTGGGEEEEEECSSCHHHHHHHHHHHTC
T ss_pred             HHHHHHHcCCCEEEEECCCCHHHHHHHHHHcCC
Confidence            345555567788888888888888888887654

>d1nrwa_ c.108.1.10 (A:) Hypothetical protein YwpJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Hypothetical protein YwpJ
species: Bacillus subtilis [TaxId: 1423]

Probab=92.35  E-value=0.094  Score=45.39  Aligned_cols=38  Identities=16%  Similarity=-0.046  Sum_probs=29.0

Q ss_pred             ccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCC
Q 044162          157 PFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDC  194 (369)
Q Consensus       157 Pgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~  194 (369)
                      |...+.|+++. +...+++-|.-+...+..+++.++.+.
T Consensus        21 ~~~~~~l~~l~~~Gi~~~i~TGR~~~~~~~~~~~l~~~~   59 (285)
T d1nrwa_          21 LENENALRQAQRDGIEVVVSTGRAHFDVMSIFEPLGIKT   59 (285)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHGGGTCCC
T ss_pred             HHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHhCCCc
Confidence            44566777775 558888889888888888888887663

>d1l6ra_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphoglycolate phosphatase, PGPase
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=92.16  E-value=0.069  Score=45.07  Aligned_cols=39  Identities=8%  Similarity=-0.077  Sum_probs=30.4

Q ss_pred             ccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCC
Q 044162          157 PFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCK  195 (369)
Q Consensus       157 Pgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~  195 (369)
                      |++.+-|+.+. +...+++.|.-+..++..+...+..++.
T Consensus        23 ~~~~~al~~l~~~g~~v~~~TGr~~~~~~~~~~~~~~~~~   62 (225)
T d1l6ra_          23 TKAIESIRSAEKKGLTVSLLSGNVIPVVYALKIFLGINGP   62 (225)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTCCSC
T ss_pred             HHHHHHHHHHHHCCCEEEEEcCCchhhhHHHHHHcCCCce
Confidence            55666777775 5578888898889999999998887653

>d1qq5a_ c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Xanthobacter autotrophicus [TaxId: 280]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: HAD-related
domain: L-2-Haloacid dehalogenase, HAD
species: Xanthobacter autotrophicus [TaxId: 280]

Probab=91.86  E-value=0.12  Score=43.46  Aligned_cols=89  Identities=11%  Similarity=0.064  Sum_probs=67.2

Q ss_pred             EEeCccHHHHHHHHhcCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCcEE
Q 044162          153 VKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENSIV  226 (369)
Q Consensus       153 vklRPgl~eFL~~ls~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~vv  226 (369)
                      ...-|++.+.|+.+. .+.+.+.|++...++..+++.++-. .+|. .+++.++.+..      +.+-+++++.+++.+|
T Consensus        92 ~~~~~~~~~~L~~l~-~~~~~v~s~~~~~~~~~~~~~~~~~-~~fd-~v~~s~~~~~~KP~p~~f~~a~~~lg~~p~e~l  168 (245)
T d1qq5a_          92 LTPYPDAAQCLAELA-PLKRAILSNGAPDMLQALVANAGLT-DSFD-AVISVDAKRVFKPHPDSYALVEEVLGVTPAEVL  168 (245)
T ss_dssp             CCBCTTHHHHHHHHT-TSEEEEEESSCHHHHHHHHHHTTCG-GGCS-EEEEGGGGTCCTTSHHHHHHHHHHHCCCGGGEE
T ss_pred             cccchhhhHHHHHHh-hhceeEEeccchHHHHHHHhhcccc-cccc-cccccccccccCccHHHHHHHHHHhCCChhhEE
Confidence            566799999999986 4679999999999999999988876 4785 56666665431      4556777888899999


Q ss_pred             EEeCCccccccCCCceEE
Q 044162          227 IVDDTESVWGGRVENLIT  244 (369)
Q Consensus       227 IvDD~~~~w~~~~~N~I~  244 (369)
                      +|+|++.-.......|+.
T Consensus       169 ~VgD~~~di~~A~~aG~~  186 (245)
T d1qq5a_         169 FVSSNGFDVGGAKNFGFS  186 (245)
T ss_dssp             EEESCHHHHHHHHHHTCE
T ss_pred             EEeCCHHHHHHHHHcCCe
Confidence            999998544333444543

>d2b82a1 c.108.1.12 (A:4-212) Class B acid phosphatase, AphA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Class B acid phosphatase, AphA
domain: Class B acid phosphatase, AphA
species: Escherichia coli [TaxId: 562]

Probab=91.80  E-value=0.039  Score=47.79  Aligned_cols=32  Identities=13%  Similarity=0.027  Sum_probs=25.3

Q ss_pred             CccHHHHHHHHh-cCccEEEecCCcHHHHHHHH
Q 044162          156 RPFVRSFLEEAS-RLFEISVCTLGNREYATRAV  187 (369)
Q Consensus       156 RPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~  187 (369)
                      -||+.+||+.+. +..+|+.-|+-+....+..+
T Consensus        88 ~pga~~fl~~~~~~Gv~IfyVTnR~~~~~e~T~  120 (209)
T d2b82a1          88 KEVARQLIDMHVRRGDAIFFVTGRSPTKTETVS  120 (209)
T ss_dssp             CHHHHHHHHHHHHHTCEEEEEECSCCCSSCCHH
T ss_pred             chhHHHHHHHHHHcCCeEEEEeCCchhhHHHHH
Confidence            489999999996 89999999987655444444

>d1yv9a1 c.108.1.14 (A:4-256) Putative hydrolase EF1188 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: Putative hydrolase EF1188
species: Enterococcus faecalis [TaxId: 1351]

Probab=91.45  E-value=0.18  Score=43.34  Aligned_cols=37  Identities=19%  Similarity=0.214  Sum_probs=24.1

Q ss_pred             ccHHHHHHHHh-cCccEEEecCCc----HHHHHHHHHHhCCC
Q 044162          157 PFVRSFLEEAS-RLFEISVCTLGN----REYATRAVKLLDPD  193 (369)
Q Consensus       157 Pgl~eFL~~ls-~~yEi~I~T~g~----~~YA~~i~~~lDp~  193 (369)
                      |++.++|+.+. ....+++.|+.+    +.++..+...++..
T Consensus        21 ~~a~~~i~~l~~~g~~~~~~Tn~s~~~~~~~~~~L~~~~~~~   62 (253)
T d1yv9a1          21 PAGKRFVERLQEKDLPFLFVTNNTTKSPETVAQRLANEFDIH   62 (253)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEECCCSSCHHHHHHHHHHHSCCC
T ss_pred             ccHHHHHHHHHHCCCCEEEEeCCCCCCHHHHHHHHHHhcCCc
Confidence            67777888776 467778887644    55555555555543

>d1nf2a_ c.108.1.10 (A:) Hypothetical protein TM0651 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Hypothetical protein TM0651
species: Thermotoga maritima [TaxId: 2336]

Probab=91.43  E-value=0.16  Score=43.84  Aligned_cols=37  Identities=14%  Similarity=-0.119  Sum_probs=23.3

Q ss_pred             ccHHHHHHHHhcCccEEEecCCcHHHHHHHHHHhCCC
Q 044162          157 PFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPD  193 (369)
Q Consensus       157 Pgl~eFL~~ls~~yEi~I~T~g~~~YA~~i~~~lDp~  193 (369)
                      |...+.|+++.+.-.+++-|..+...+..+++.+.+.
T Consensus        22 ~~~~~al~~l~~~~~~~i~TGR~~~~~~~~~~~~~~~   58 (267)
T d1nf2a_          22 EKDRRNIEKLSRKCYVVFASGRMLVSTLNVEKKYFKR   58 (267)
T ss_dssp             HHHHHHHHHHTTTSEEEEECSSCHHHHHHHHHHHSSS
T ss_pred             HHHHHHHHHHHcCCEEEEECCCChHHHHHHHHHhccc
Confidence            4556667777665566666666666666776665443

>d1wvia_ c.108.1.14 (A:) Putative phosphatase SMU.1415c {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: Putative phosphatase SMU.1415c
species: Streptococcus mutans [TaxId: 1309]

Probab=91.41  E-value=0.061  Score=46.64  Aligned_cols=14  Identities=29%  Similarity=0.577  Sum_probs=12.0

Q ss_pred             EEEEeCCCceeeec
Q 044162           95 HLVLDLDHTLLHSR  108 (369)
Q Consensus        95 ~LVLDLD~TLIhs~  108 (369)
                      .+++||||||++..
T Consensus         4 ~vlFDlDGTL~~~~   17 (253)
T d1wvia_           4 GYLIDLDGTIYKGK   17 (253)
T ss_dssp             EEEEECBTTTEETT
T ss_pred             EEEEcCcCceEECC
Confidence            68999999999853

>d2b30a1 c.108.1.10 (A:18-300) PFL1270w orthologue {Plasmodium vivax [TaxId: 5855]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: PFL1270w orthologue
species: Plasmodium vivax [TaxId: 5855]

Probab=91.35  E-value=0.12  Score=44.41  Aligned_cols=35  Identities=17%  Similarity=0.098  Sum_probs=26.0

Q ss_pred             ccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhC
Q 044162          157 PFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLD  191 (369)
Q Consensus       157 Pgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lD  191 (369)
                      |...+.|+++. +...++|-|.-+...+..+++.+.
T Consensus        31 ~~~~~al~~l~~~Gi~v~i~TGR~~~~~~~~~~~l~   66 (283)
T d2b30a1          31 SENIDAIKEAIEKGYMVSICTGRSKVGILSAFGEEN   66 (283)
T ss_dssp             HHHHHHHHHHHHHTCEEEEECSSCHHHHHHHHCHHH
T ss_pred             HHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhC
Confidence            45556666664 678889999988888888876554

>d1wzca1 c.108.1.10 (A:1-243) Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=90.69  E-value=0.21  Score=41.73  Aligned_cols=33  Identities=24%  Similarity=0.177  Sum_probs=26.4

Q ss_pred             HHHHH-hcCccEEEecCCcHHHHHHHHHHhCCCC
Q 044162          162 FLEEA-SRLFEISVCTLGNREYATRAVKLLDPDC  194 (369)
Q Consensus       162 FL~~l-s~~yEi~I~T~g~~~YA~~i~~~lDp~~  194 (369)
                      -|+++ .+...+++-|.-+...+..+++.++...
T Consensus        25 ai~~l~~~G~~~~~aTGR~~~~~~~~~~~~~~~~   58 (243)
T d1wzca1          25 IIEELKDMGFEIIFNSSKTRAEQEYYRKELEVET   58 (243)
T ss_dssp             HHHHHHHTTEEEEEECSSCHHHHHHHHHHHTCCS
T ss_pred             HHHHHHHCCCEEEEEeCCCHHHHHHHHHHhcccc
Confidence            34444 3678899999999999999999998875

>d1j97a_ c.108.1.4 (A:) Phosphoserine phosphatase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphoserine phosphatase
domain: Phosphoserine phosphatase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=90.28  E-value=0.044  Score=44.77  Aligned_cols=48  Identities=17%  Similarity=0.178  Sum_probs=39.5

Q ss_pred             EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceE
Q 044162          153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRI  201 (369)
Q Consensus       153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri  201 (369)
                      ....+|+.++++.+. +.+.+++.|.+...++....+...... +|...+
T Consensus        74 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  122 (210)
T d1j97a_          74 ITPTEGAEETIKELKNRGYVVAVVSGGFDIAVNKIKEKLGLDY-AFANRL  122 (210)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHHTCSE-EEEEEE
T ss_pred             hhhhhhHHHHHHHHHHcCCEEEeecccccccccchhhccchhh-hhhhhh
Confidence            567899999999997 668999999999999999999888774 454433

>d1u02a_ c.108.1.15 (A:) Trehalose-6-phosphate phosphatase related protein {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Trehalose-phosphatase
domain: Trehalose-6-phosphate phosphatase related protein
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=88.59  E-value=0.17  Score=41.71  Aligned_cols=29  Identities=14%  Similarity=0.122  Sum_probs=21.0

Q ss_pred             CccHHHHHHHHhcCccEEEecCCcHHHHH
Q 044162          156 RPFVRSFLEEASRLFEISVCTLGNREYAT  184 (369)
Q Consensus       156 RPgl~eFL~~ls~~yEi~I~T~g~~~YA~  184 (369)
                      .|-+.+.|+++.+...++|-|.-+...+.
T Consensus        24 ~~~~~~~l~~l~~~~~v~i~TGR~~~~l~   52 (229)
T d1u02a_          24 DAGLLSLISDLKERFDTYIVTGRSPEEIS   52 (229)
T ss_dssp             CHHHHHHHHHHHHHSEEEEECSSCHHHHH
T ss_pred             CHHHHHHHHHHhhCCCEEEEcCCCHHHhh
Confidence            47788888888877778887766655443

>d1rkua_ c.108.1.11 (A:) Homoserine kinase ThrH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Homoserine kinase ThrH
domain: Homoserine kinase ThrH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.05  E-value=0.088  Score=42.78  Aligned_cols=82  Identities=9%  Similarity=0.059  Sum_probs=53.9

Q ss_pred             EEEEeCccHHHHHHHHhcCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccC---------cccccccccCCC
Q 044162          151 LLVKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQ---------KERKYLDLVLGQ  221 (369)
Q Consensus       151 ~~vklRPgl~eFL~~ls~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~---------~~~KdL~~l~~~  221 (369)
                      ..+...|+...+.......+.+++.|.+....+..+...+.... ++.+.+........         ...+....++.+
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  144 (206)
T d1rkua_          66 ATLKPLEGAVEFVDWLRERFQVVILSDTFYEFSQPLMRQLGFPT-LLCHKLEIDDSDRVVGYQLRQKDPKRQSVIAFKSL  144 (206)
T ss_dssp             TTCCCCTTHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTCCC-EEEEEEEECTTSCEEEEECCSSSHHHHHHHHHHHT
T ss_pred             hhccccchHHHHHHHhhcCceEEEeccCchHHHHHHHHHhCCch-hhcceeeeecccccccccccchhhHHHHHHHhccc
Confidence            34677899999999999999999999999999999999887664 33333321221110         011122234456


Q ss_pred             CCcEEEEeCCcc
Q 044162          222 ENSIVIVDDTES  233 (369)
Q Consensus       222 ~~~vvIvDD~~~  233 (369)
                      .+.|+.|=|...
T Consensus       145 ~~eviaiGDg~N  156 (206)
T d1rkua_         145 YYRVIAAGDSYN  156 (206)
T ss_dssp             TCEEEEEECSST
T ss_pred             ccceEEecCCcc
Confidence            777777777653

>d1rlma_ c.108.1.10 (A:) Sugar phosphatase SupH (YbiV) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Sugar phosphatase SupH (YbiV)
species: Escherichia coli [TaxId: 562]

Probab=86.83  E-value=0.16  Score=43.54  Aligned_cols=37  Identities=14%  Similarity=0.028  Sum_probs=25.4

Q ss_pred             ccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCC
Q 044162          157 PFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPD  193 (369)
Q Consensus       157 Pgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~  193 (369)
                      |...+.|+.+. +...+++-|.-+...+..+++.++..
T Consensus        23 ~~~~~~l~~l~~~gi~~~i~TGR~~~~~~~~~~~l~~~   60 (269)
T d1rlma_          23 PRFMAQYQELKKRGIKFVVASGNQYYQLISFFPELKDE   60 (269)
T ss_dssp             HHHHHHHHHHHHHTCEEEEECSSCHHHHGGGCTTTTTT
T ss_pred             HHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCcc
Confidence            44566666665 45788888877777777777666554

>d1zd3a1 c.108.1.2 (A:2-224) Epoxide hydrolase, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: YihX-like
domain: Epoxide hydrolase, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.70  E-value=0.15  Score=41.57  Aligned_cols=91  Identities=11%  Similarity=0.014  Sum_probs=59.9

Q ss_pred             EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHH----HhCCCCCcccceEEeeccccC------cccccccccCCC
Q 044162          153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVK----LLDPDCKYFNSRIITREDFKQ------KERKYLDLVLGQ  221 (369)
Q Consensus       153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~----~lDp~~~~f~~Ri~srd~~~~------~~~KdL~~l~~~  221 (369)
                      ...+|++.++|+.+. +.+.++|-|++....+...++    ..+-. .+|. .+++.++...      .+.+-++.++.+
T Consensus        98 ~~~~~~~~~~l~~L~~~~~~~~i~Tn~~~~~~~~~~~~~~~~~~~~-~~fd-~i~~s~~~~~~KP~~~~~~~~~~~~~~~  175 (225)
T d1zd3a1          98 RKINRPMLQAALMLRKKGFTTAILTNTWLDDRAERDGLAQLMCELK-MHFD-FLIESCQVGMVKPEPQIYKFLLDTLKAS  175 (225)
T ss_dssp             CEECHHHHHHHHHHHHTTCEEEEEECCCCCCSTTHHHHHHHHHHHH-TTSS-EEEEHHHHTCCTTCHHHHHHHHHHHTCC
T ss_pred             CCCCccHHHHHHHHHhccCccccccccchhhHHHHHHHHhhhcChH-hhcc-EEEeccccccchhHHHHHHHHhhhcccC
Confidence            568999999999997 678999999876554433332    22222 3674 4665555432      145566778888


Q ss_pred             CCcEEEEeCCccccccCCCceEEe
Q 044162          222 ENSIVIVDDTESVWGGRVENLITV  245 (369)
Q Consensus       222 ~~~vvIvDD~~~~w~~~~~N~I~I  245 (369)
                      ++.+|+|+|++.-.......|++.
T Consensus       176 p~e~l~VgD~~~Di~~A~~~G~~t  199 (225)
T d1zd3a1         176 PSEVVFLDDIGANLKPARDLGMVT  199 (225)
T ss_dssp             GGGEEEEESCHHHHHHHHHTTCEE
T ss_pred             ccceeEEecCHHHHHHHHHcCCEE
Confidence            899999999975554334455543