Citrus Sinensis ID: 044171
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 813 | 2.2.26 [Sep-21-2011] | |||||||
| O64495 | 775 | Subtilisin-like protease | no | no | 0.829 | 0.869 | 0.339 | 4e-93 | |
| Q39547 | 731 | Cucumisin OS=Cucumis melo | N/A | no | 0.819 | 0.911 | 0.331 | 5e-91 | |
| O65351 | 757 | Subtilisin-like protease | no | no | 0.827 | 0.889 | 0.321 | 2e-87 | |
| Q9LLL8 | 749 | Xylem serine proteinase 1 | no | no | 0.809 | 0.878 | 0.325 | 2e-77 | |
| P29141 | 806 | Minor extracellular prote | yes | no | 0.532 | 0.537 | 0.248 | 1e-20 | |
| P15293 | 1902 | PII-type proteinase OS=La | N/A | no | 0.615 | 0.262 | 0.222 | 2e-08 | |
| O31788 | 442 | Serine protease AprX OS=B | no | no | 0.099 | 0.183 | 0.423 | 7e-08 | |
| P11018 | 319 | Major intracellular serin | no | no | 0.189 | 0.482 | 0.289 | 1e-07 | |
| Q99405 | 380 | M-protease OS=Bacillus cl | no | no | 0.071 | 0.152 | 0.411 | 1e-06 | |
| P20724 | 378 | Alkaline elastase YaB OS= | N/A | no | 0.071 | 0.153 | 0.397 | 4e-06 |
| >sp|O64495|SDD1_ARATH Subtilisin-like protease SDD1 OS=Arabidopsis thaliana GN=SDD1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 343 bits (879), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 260/765 (33%), Positives = 397/765 (51%), Gaps = 91/765 (11%)
Query: 78 LYSYTHLLSGFAIHIESEEAVSTLQNAKGVRIIHEDIKMEKLTMHTPEFLGIP----VGV 133
LYSY + GFA + EA L+ + V + D ++ T ++ +FLG+ GV
Sbjct: 72 LYSYGSAIEGFAAQLTESEA-EILRYSPEVVAVRPDHVLQVQTTYSYKFLGLDGFGNSGV 130
Query: 134 WPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSI-SKFKGKCTTGNRFPSTAC 192
W + F G+G +IG +DTG+ PE PSF G SI K+KG C G F S++C
Sbjct: 131 WSK---SRF-GQGTIIGVLDTGVWPESPSFDD---TGMPSIPRKWKGICQEGESFSSSSC 183
Query: 193 NSKIVGAQYFAR----AAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGF 248
N K++GA++F R A N R+Y S D+ GHG+HTAST G+ V G
Sbjct: 184 NRKLIGARFFIRGHRVANSPEESPNMPREYISARDSTGHGTHTASTVGGSSVSMANVLGN 243
Query: 249 NYGYASGMAPGARIAVYKALYTFGGYMADVVAAVDQAVEDGVDIISLSVGPSAVPSGPAA 308
G A GMAPGA IAVYK + G Y +D++AA+D A++D VD++SLS+G +P
Sbjct: 244 GAGVARGMAPGAHIAVYKVCWFNGCYSSDILAAIDVAIQDKVDVLSLSLGGFPIP----L 299
Query: 309 FLNALEMELLFATKAGVLVVQAAGNSGPSSSSILSFSPWITSIAASITDRKYNNTIKLAN 368
+ + + + A + G+ V+ AAGN+GP SS+ + +PW+++I A DR++ ++LAN
Sbjct: 300 YDDTIAIGTFRAMERGISVICAAGNNGPIESSVANTAPWVSTIGAGTLDRRFPAVVRLAN 359
Query: 369 GHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIIC 428
G G L P G+ +V + V+ G E C L +RGK++IC
Sbjct: 360 GKLLYGESLYP---GKGIKNAGREVEVIY--VTGGDKGSEFCLRGSLPREE-IRGKMVIC 413
Query: 429 TYSFDFENDDATIATVADNIKKIEAAGFILRMDPDQDFSPNKFKDMALDV---PGIILNN 485
+ ++ A + I A ++ ++D ++DV P ++
Sbjct: 414 DRGVNGRSEKGEAVKEAGGVAMILAN---TEINQEED---------SIDVHLLPATLIGY 461
Query: 486 MQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPVVASYSSRGPDVNNA 545
+S LL+ Y + T+K +ARI+ G I +AP VA +S+RGP + N
Sbjct: 462 TESV--LLKAYVNATVK----------PKARIIFGGTVIGRSRAPEVAQFSARGPSLAN- 508
Query: 546 LLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNL----KGRNFALLSGTSMATPHIAGVAA 601
+LKP+++APG +I AAW P + G L + NF ++SGTSM+ PH++G+ A
Sbjct: 509 ----PSILKPDMIAPGVNIIAAW-PQNLGPTGLPYDSRRVNFTVMSGTSMSCPHVSGITA 563
Query: 602 LIKQRHPKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGFI 661
LI+ +P WSPAAI SA+MT+A++ D G I +D + P A F GAG +
Sbjct: 564 LIRSAYPNWSPAAIKSALMTTADLYDRQGKAI--KD-GNKP--------AGVFAIGAGHV 612
Query: 662 NPARAIDPGLIFNAHFQEYVQFLCAVPGVDDDYV----RRVTGYGCPTENQGWCSDLNTP 717
NP +AI+PGL++N +Y+ +LC + D + + V+ G +N G+ LN P
Sbjct: 613 NPQKAINPGLVYNIQPVDYITYLCTLGFTRSDILAITHKNVSCNGILRKNPGF--SLNYP 670
Query: 718 SITISNLVG--SRKVIRRVRNVSSANETYTVTVKEPSGVKVSVSPQ--VFK--IRGLASR 771
SI + G + + RRV NV S N Y+V VK P G+KV V+P+ VFK + L+ R
Sbjct: 671 SIAVIFKRGKTTEMITRRVTNVGSPNSIYSVNVKAPEGIKVIVNPKRLVFKHVDQTLSYR 730
Query: 772 ELKIVLKATNSTRAYSFGAMVLQGNNNH----IIRIPIAVYVSTS 812
++ K + SF L N+H +R PI+V + T+
Sbjct: 731 VWFVLKKKNRGGKVASFAQGQLTWVNSHNLMQRVRSPISVTLKTN 775
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Serine protease involved in the negative regulation of stomatal density and distribution. Positive regulator of water use efficiency (WUE). Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: - |
| >sp|Q39547|CUCM1_CUCME Cucumisin OS=Cucumis melo PE=1 SV=1 | Back alignment and function description |
|---|
Score = 336 bits (861), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 251/757 (33%), Positives = 377/757 (49%), Gaps = 91/757 (12%)
Query: 62 HDRFLESLLHGHSY---TKLYSYTHLLSGFAIHIESEEAVSTLQNAKGVRIIHEDIKMEK 118
H R + + G ++ + L++Y +GFA+ + EEA + + +GV + + E
Sbjct: 51 HHRAMLEQVVGSTFAPESVLHTYKRSFNGFAVKLTEEEA-EKIASMEGVVSVFLNEMNEL 109
Query: 119 LTMHTPEFLGIPVGVWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFK 178
T + +FLG P+ V P E +V+G +DTGI PE PSF F + K+K
Sbjct: 110 HTTRSWDFLGFPLTV-PRRSQVE---SNIVVGVLDTGIWPESPSFDDEGF--SPPPPKWK 163
Query: 179 GKCTTGNRFPSTACNSKIVGAQ-YFARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAG 237
G C T N F CN KI+GA+ Y I+ GD N P D +GHG+HTASTAAG
Sbjct: 164 GTCETSNNF---RCNRKIIGARSYHIGRPISPGDVNG------PRDTNGHGTHTASTAAG 214
Query: 238 NHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFGGYMADVVAAVDQAVEDGVDIISLSV 297
+ G G A G P ARIA YK + G D++AA D A+ DGVDIISLSV
Sbjct: 215 GLVSQANLYGLGLGTARGGVPLARIAAYKVCWNDGCSDTDILAAYDDAIADGVDIISLSV 274
Query: 298 GPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSSSILSFSPWITSIAASITD 357
G A P F++A+ + A + G+L +AGN GP+ + S SPW+ S+AAS D
Sbjct: 275 G-GANPR--HYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMD 331
Query: 358 RKYNNTIKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHR--NVSTGIFSLESCQYPEL 415
RK+ +++ NG SF G+ + T YYPL + D+ + + ST F + P
Sbjct: 332 RKFVTQVQIGNGQSFQGVSIN--TFDNQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPN- 388
Query: 416 FIPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPDQDFSPNKFKDMA 475
L++GK+++C SF + K ++ A +L +D++ +
Sbjct: 389 ----LLKGKIVVCEASFGPH----------EFFKSLDGAAGVLMTSNTRDYAD------S 428
Query: 476 LDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPVVASY 535
+P +L+ DLL + R+ A +F + I + APVV S+
Sbjct: 429 YPLPSSVLD----PNDLLATLR-YIYSIRSPGATIFKS--------TTILNASAPVVVSF 475
Query: 536 SSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPH 595
SSRGP+ T DV+KP+I PG I AAW + + F ++SGTSM+ PH
Sbjct: 476 SSRGPN-----RATKDVIKPDISGPGVEILAAWPSVAPVGGIRRNTLFNIISGTSMSCPH 530
Query: 596 IAGVAALIKQRHPKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFD 655
I G+A +K +P WSPAAI SA+MT+A SP+ A+ +P E F
Sbjct: 531 ITGIATYVKTYNPTWSPAAIKSALMTTA-------SPMNAR---FNPQAE--------FA 572
Query: 656 FGAGFINPARAIDPGLIFNAHFQEYVQFLCAVPGVDDDYVRRVTG--YGCPTENQGWCSD 713
+G+G +NP +A+ PGL+++A+ +YV+FLC G + VRR+TG C + N G D
Sbjct: 573 YGSGHVNPLKAVRPGLVYDANESDYVKFLCG-QGYNTQAVRRITGDYSACTSGNTGRVWD 631
Query: 714 LNTPSITIS---NLVGSRKVIRRVRNVSSANETYTVTVKEPSGVKVSVSPQVFKIRGLAS 770
LN PS +S + ++ R + +V+ TY + P G+ +SV+P V GL
Sbjct: 632 LNYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGD 691
Query: 771 RELKIVLKATNSTRAYSFGAMVLQGNNNHIIRIPIAV 807
R+ L S + + A ++ + H +R PI +
Sbjct: 692 RK-SFTLTVRGSIKGFVVSASLVWSDGVHYVRSPITI 727
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Cucumis melo (taxid: 3656) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 5 |
| >sp|O65351|SUBL_ARATH Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 324 bits (831), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 240/746 (32%), Positives = 390/746 (52%), Gaps = 73/746 (9%)
Query: 78 LYSYTHLLSGFAIHIESEEAVSTLQNAKGVRIIHEDIKMEKLTMHTPEFLGI---PVGVW 134
LY+Y + + GF+ + EEA S L GV + + + E T TP FLG+ ++
Sbjct: 66 LYTYENAIHGFSTRLTQEEADS-LMTQPGVISVLPEHRYELHTTRTPLFLGLDEHTADLF 124
Query: 135 PTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNS 194
P G S VV+G +DTG+ PE S++ F S +KG C G F ++ CN
Sbjct: 125 PEAG----SYSDVVVGVLDTGVWPESKSYSDEGF--GPIPSSWKGGCEAGTNFTASLCNR 178
Query: 195 KIVGAQYFARA-AIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYA 253
K++GA++FAR G + +++ SP D DGHG+HT+STAAG+ + G+ G A
Sbjct: 179 KLIGARFFARGYESTMGPIDESKESRSPRDDDGHGTHTSSTAAGSVVEGASLLGYASGTA 238
Query: 254 SGMAPGARIAVYKALYTFGGYMADVVAAVDQAVEDGVDIISLSVGPSAVPSGPAAFLNAL 313
GMAP AR+AVYK + G + +D++AA+D+A+ D V+++S+S+G + + +
Sbjct: 239 RGMAPRARVAVYKVCWLGGCFSSDILAAIDKAIADNVNVLSMSLGGGM----SDYYRDGV 294
Query: 314 EMELLFATKAGVLVVQAAGNSGPSSSSILSFSPWITSIAASITDRKYNNTIKLANGHSFS 373
+ A + G+LV +AGN+GPSSSS+ + +PWIT++ A DR + L NG +F+
Sbjct: 295 AIGAFAAMERGILVSCSAGNAGPSSSSLSNVAPWITTVGAGTLDRDFPALAILGNGKNFT 354
Query: 374 GIGL-APPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSF 432
G+ L L P A + N + G + IP V+GK+++C
Sbjct: 355 GVSLFKGEALPDKLLPFIYAGNA--SNATNGNLCMTGT-----LIPEKVKGKIVMC---- 403
Query: 433 DFENDDATIATVADNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDL 492
D I ++AAG + + + + + A +P + + + D+
Sbjct: 404 -----DRGINARVQKGDVVKAAGGVGMILANTAANGEELVADAHLLPATTVG--EKAGDI 456
Query: 493 LEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPVVASYSSRGPDVNNALLQTADV 552
+ +Y + A +++ + +PVVA++SSRGP N++ T ++
Sbjct: 457 IRHYVTTDPNPTASISIL----------GTVVGVKPSPVVAAFSSRGP---NSI--TPNI 501
Query: 553 LKPNIMAPGSSIWAAWSPSSEGDPNLKGRN----FALLSGTSMATPHIAGVAALIKQRHP 608
LKP+++APG +I AAW+ + G L + F ++SGTSM+ PH++G+AAL+K HP
Sbjct: 502 LKPDLIAPGVNILAAWT-GAAGPTGLASDSRRVEFNIISGTSMSCPHVSGLAALLKSVHP 560
Query: 609 KWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGFINPARAID 668
+WSPAAI SA+MT+A T G P+L + P +TPFD GAG ++P A +
Sbjct: 561 EWSPAAIRSALMTTAYKTYKDGKPLL-DIATGKP--------STPFDHGAGHVSPTTATN 611
Query: 669 PGLIFNAHFQEYVQFLCAVPGVDDDYVRRVT--GYGCPTENQGWCSDLNTPSITIS-NLV 725
PGLI++ ++Y+ FLCA+ +R V+ Y C +DLN PS ++ + V
Sbjct: 612 PGLIYDLTTEDYLGFLCAL-NYTSPQIRSVSRRNYTCDPSKSYSVADLNYPSFAVNVDGV 670
Query: 726 GSRKVIRRVRNVSSANETYTVTV-KEPSGVKVSVSPQVFKIRGLASRELKIVLKATNSTR 784
G+ K R V +V A TY+V V E +GVK+SV P V + ++ V +S++
Sbjct: 671 GAYKYTRTVTSVGGAG-TYSVKVTSETTGVKISVEPAVLNFKEANEKKSYTVTFTVDSSK 729
Query: 785 ---AYSFGAMVLQGNNNHIIRIPIAV 807
+ SFG++ + H++ P+A+
Sbjct: 730 PSGSNSFGSIEWS-DGKHVVGSPVAI 754
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Serine protease. Has a substrate preference for the hydrophobic residues Phe and Ala and the basic residue Asp in the P1 position, and for Asp, Leu or Ala in the P1' position. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|Q9LLL8|XSP1_ARATH Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 290 bits (743), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 245/753 (32%), Positives = 356/753 (47%), Gaps = 95/753 (12%)
Query: 77 KLYSYTHLLSGFAIHIESEEAVSTLQNAKGVRIIHEDIKMEKL-TMHTPEFLGIPVGVWP 135
K+YSYT + FA + EA ++ + V + + KL T + +F+G+P+
Sbjct: 74 KVYSYTKAFNAFAAKLSPHEAKKMMEMEEVVSVSRNQYR--KLHTTKSWDFVGLPLTAKR 131
Query: 136 TLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSK 195
L V+IG +DTGI P+ SF H +K+KG C F T CN+K
Sbjct: 132 HLKAER----DVIIGVLDTGITPDSESFLDHGL--GPPPAKWKGSCGPYKNF--TGCNNK 183
Query: 196 IVGAQYFAR-AAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYAS 254
I+GA+YF + G+ S P D DGHG+HT+ST AG + G G A
Sbjct: 184 IIGAKYFKHDGNVPAGEVRS------PIDIDGHGTHTSSTVAGVLVANASLYGIANGTAR 237
Query: 255 GMAPGARIAVYKALYTFGGYM-ADVVAAVDQAVEDGVDIISLSVGPSAVPSGPAAFLNAL 313
G P AR+A+YK + G D++A + A+ DGV+IIS+S+G +++
Sbjct: 238 GAVPSARLAMYKVCWARSGCADMDILAGFEAAIHDGVEIISISIGGPIADYSS----DSI 293
Query: 314 EMELLFATKAGVLVVQAAGNSGPSSSSILSFSPWITSIAASITDRKYNNTIKLANGHSFS 373
+ A + G+L V +AGN GPSS ++ + PWI ++AAS DR + + I L NG SFS
Sbjct: 294 SVGSFHAMRKGILTVASAGNDGPSSGTVTNHEPWILTVAASGIDRTFKSKIDLGNGKSFS 353
Query: 374 GIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFD 433
G+G++ + YPL + D +T L + + V+GK+++C
Sbjct: 354 GMGISMFSPKAKSYPLVSGVDAAK---NTDDKYLARYCFSDSLDRKKVKGKVMVCRMGG- 409
Query: 434 FENDDATIATVADNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLL 493
V IK AG I+ D D N MA P +N+ + +
Sbjct: 410 --------GGVESTIKSYGGAGAIIVSDQYLD---NAQIFMA---PATSVNSSVGDI-IY 454
Query: 494 EYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPVVASYSSRGPDVNNALLQTADVL 553
Y NS +R+ AV+ R + AP VAS+SSRGP+ + L L
Sbjct: 455 RYINS----TRSASAVIQKTRQVTI---------PAPFVASFSSRGPNPGSIRL-----L 496
Query: 554 KPNIMAPGSSIWAAWSPSS-----EGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHP 608
KP+I APG I AA++ +GD F +LSGTSMA PH+AGVAA +K HP
Sbjct: 497 KPDIAAPGIDILAAFTLKRSLTGLDGDTQFS--KFTILSGTSMACPHVAGVAAYVKSFHP 554
Query: 609 KWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGFINPARAID 668
W+PAAI SA++TSA+ PI V A F +G G INP RA
Sbjct: 555 DWTPAAIKSAIITSAK-----------------PISRRVNKDAE-FAYGGGQINPRRAAS 596
Query: 669 PGLIFNAHFQEYVQFLCAVPGVDDDYVRRVTG---YGCPTENQGWCSD-LNTPSITISNL 724
PGL+++ YVQFLC G + + + G C + G D LN P+I ++
Sbjct: 597 PGLVYDMDDISYVQFLCG-EGYNATTLAPLVGTRSVSCSSIVPGLGHDSLNYPTIQLTLR 655
Query: 725 VGSRKVI----RRVRNVSSANETYTVTVKEPSGVKVSVSPQVFKI-RGLASRELKIVLKA 779
+ RRV NV + YT TV+ P GV+++V PQ + R K+V+KA
Sbjct: 656 SAKTSTLAVFRRRVTNVGPPSSVYTATVRAPKGVEITVEPQSLSFSKASQKRSFKVVVKA 715
Query: 780 TNSTRAYSFGAMVLQGNNNHIIRIPIAVYVSTS 812
T +++ + H +R PI +Y TS
Sbjct: 716 KQMTPGKIVSGLLVWKSPRHSVRSPIVIYSPTS 748
|
Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P29141|SUBV_BACSU Minor extracellular protease vpr OS=Bacillus subtilis (strain 168) GN=vpr PE=1 SV=1 | Back alignment and function description |
|---|
Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 142/572 (24%), Positives = 226/572 (39%), Gaps = 139/572 (24%)
Query: 81 YTHLLSGFAIHIESEEAVSTLQNAKGVRIIHEDIKMEKLTMHTPEFLGIPVGVWPTLG-- 138
Y + SGF++ + + E + L K V+ ++ ++ + M + V P +
Sbjct: 106 YEQVFSGFSMKLPANE-IPKLLAVKDVKAVYPNVTYKTDNMKDKDVTISEDAVSPQMDDS 164
Query: 139 ----GAE------FSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFP 188
GA ++G+G+ + IDTG+ HP ++ ++KG N +
Sbjct: 165 APYIGANDAWDLGYTGKGIKVAIIDTGVEYNHPDL-------KKNFGQYKGYDFVDNDY- 216
Query: 189 STACNSKIVGAQYFARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGF 248
D T +A HG+H A T A N
Sbjct: 217 ----------------------DPKETPTGDPRGEATDHGTHVAGTVAAN---------- 244
Query: 249 NYGYASGMAPGARIAVYKALYTFG-GYMADVVAAVDQAVEDGVDIISLSVGPSAVPSGPA 307
G G+AP A + Y+ L G G +V+A V++AV+DG D+++LS+G S
Sbjct: 245 --GTIKGVAPDATLLAYRVLGPGGSGTTENVIAGVERAVQDGADVMNLSLGNS------- 295
Query: 308 AFLN----ALEMELLFATKAGVLVVQAAGNSGPSSSSILSFSPWITSIAASITDRKYNNT 363
LN A L +A GV+ V + GNSGP+ ++ SP + A S+
Sbjct: 296 --LNNPDWATSTALDWAMSEGVVAVTSNGNSGPNGWTV--GSPGTSREAISV-------- 343
Query: 364 IKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRG 423
G P V + ++A V N + +L + + EL +
Sbjct: 344 ----------GATQLPLNEYAVTFGSYSSAKVMGYNKEDDVKALNNKEV-ELVEAGIGEA 392
Query: 424 KLIICTYSFDFENDDAT--IATV----------ADNIKKIEAAGFILRMDPDQDFSPNKF 471
K DFE D T +A V ADN KK A G ++ + + N
Sbjct: 393 K--------DFEGKDLTGKVAVVKRGSIAFVDKADNAKKAGAIGMVVYNNLSGEIEAN-- 442
Query: 472 KDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPV 531
VPG+ + ++ S++ E S +AG+ + +
Sbjct: 443 ------VPGMSVPTIKLSLEDGEKLVSAL---KAGETKTTF--------KLTVSKALGEQ 485
Query: 532 VASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSM 591
VA +SSRGP ++ ++ KP+I APG +I + P + GTSM
Sbjct: 486 VADFSSRGPVMDTWMI------KPDISAPGVNIVSTIPTHDPDHP----YGYGSKQGTSM 535
Query: 592 ATPHIAGVAALIKQRHPKWSPAAITSAMMTSA 623
A+PHIAG A+IKQ PKWS I +A+M +A
Sbjct: 536 ASPHIAGAVAVIKQAKPKWSVEQIKAAIMNTA 567
|
Not required for growth or sporulation. Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P15293|P2P_LACLC PII-type proteinase OS=Lactococcus lactis subsp. cremoris GN=prt PE=3 SV=1 | Back alignment and function description |
|---|
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 142/639 (22%), Positives = 252/639 (39%), Gaps = 139/639 (21%)
Query: 80 SYTHLLSGFAIHIESEEAVSTLQNAKGVRIIHEDIKMEKLTMHTPEFLGIPVGVWPTLGG 139
SY ++++GF+ + + + L+ GV+ + + K+ T V
Sbjct: 149 SYGYVVNGFSTKVRVVD-IPKLKQIAGVKTV----TLAKVYYPTDAKANSMANVQAVWSN 203
Query: 140 AEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGA 199
++ GEG V+ ID+GI+P H ++ + K +F TA + +
Sbjct: 204 YKYKGEGTVVSVIDSGIDPTHKDM---RLSDDKDVKLTKSDV---EKFTDTAKHGR---- 253
Query: 200 QYFARAAIAYGDFNSTRDYASPFDA-------DGHGSHTA----STAAGNHRVPVIVSGF 248
YF + + YG FN YA D + HG H A + G+ +V
Sbjct: 254 -YF-NSKVPYG-FN----YADNNDTITDDTVDEQHGMHVAGIIGANGTGDDPAKSVV--- 303
Query: 249 NYGYASGMAPGARIAVYKALY------TFGGYMADVVAAVDQAVEDGVDIISLSVGPSAV 302
G+AP A++ K T G A +V+A++ + + G D++++S+G
Sbjct: 304 ------GVAPEAQLLAMKVFTNSDTSATTGS--ATLVSAIEDSAKIGADVLNMSLGSD-- 353
Query: 303 PSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSSSILSF------------------ 344
SG + + A ++G V +AGNSG S S+
Sbjct: 354 -SGNQTLEDPELAAVQNANESGTAAVISAGNSGTSGSATEGVNKDYYGLQDNEMVGTPGT 412
Query: 345 SPWITSIAASITDRKYNNTIKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGI 404
S T++A++ + + +G +G+ L P T+ N TG
Sbjct: 413 SRGATTVASAENTDVITQAVTITDG---TGLQLGPETI------------QLSSNDFTGS 457
Query: 405 FSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIA----TVADNIKKIEAAGFILRM 460
F + + L +GK + Y+ D + A + T AD K +AAG +
Sbjct: 458 FDQKKFYVVKDASGNLSKGK--VADYTADAKGKIAIVKRGELTFADKQKYAQAAGAAGLI 515
Query: 461 DPDQDFSPNKFKDMALDV--PGIILNNMQSSMDLLEYYNSHTIKSRAGQ-AVVFHARARI 517
+ D + MAL P L+++ + L+++ +H S + A+ +
Sbjct: 516 IVNNDGTATPVTSMALTTTFPTFGLSSV-TGQKLVDWVAAHPDDSLGVKIALTLVPNQKY 574
Query: 518 LDGRRAIYHGQAPVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPN 577
+ + ++ ++S GP N + KP+I APG +IW+ +
Sbjct: 575 TEDK----------MSDFTSYGPVSNLS-------FKPDITAPGGNIWSTQN-------- 609
Query: 578 LKGRNFALLSGTSMATPHIAGVAALIKQR-HPKWSPAAITSAMMTSAEVTD-------HS 629
+ +SGTSMA+P IAG AL+KQ + K +P + +TD ++
Sbjct: 610 --NNGYTNMSGTSMASPFIAGSQALLKQALNNKNNPFYAYYKQLKGTALTDFLKTVEMNT 667
Query: 630 GSPILAQDYSDSPILEHVLVHATPFDFGAGFINPARAID 668
PI +Y+ +V+V +P GAG ++ AID
Sbjct: 668 AQPINDINYN------NVIV--SPRRQGAGLVDVKAAID 698
|
Protease which breaks down milk proteins during the growth of the bacteria on milk. Lactococcus lactis subsp. cremoris (taxid: 1359) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 9 EC: 6 |
| >sp|O31788|APRX_BACSU Serine protease AprX OS=Bacillus subtilis (strain 168) GN=aprX PE=1 SV=1 | Back alignment and function description |
|---|
Score = 60.1 bits (144), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 53/92 (57%), Gaps = 11/92 (11%)
Query: 532 VASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLK----GRNFALLS 587
VAS+SSRGP V KP+I+APG +I + SP+S D K G + +S
Sbjct: 329 VASFSSRGPTVYGKE-------KPDILAPGVNIISLRSPNSYIDKLQKSSRVGSQYFTMS 381
Query: 588 GTSMATPHIAGVAALIKQRHPKWSPAAITSAM 619
GTSMATP AG+AALI Q++P +P + +
Sbjct: 382 GTSMATPICAGIAALILQQNPDLTPDEVKELL 413
|
Displays serine protease activity. Seems to have a broad substrate specificity. Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P11018|ISP1_BACSU Major intracellular serine protease OS=Bacillus subtilis (strain 168) GN=isp PE=1 SV=2 | Back alignment and function description |
|---|
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 85/211 (40%), Gaps = 57/211 (27%)
Query: 128 GIPVGVWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRF 187
GI V P + G+ + + +DTG + HP
Sbjct: 25 GIKVIKAPEMWAKGVKGKNIKVAVLDTGCDTSHPDL------------------------ 60
Query: 188 PSTACNSKIVGAQYFARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSG 247
++I+G + F D D S D +GHG+H A T A N
Sbjct: 61 -----KNQIIGGKNFTD------DDGGKEDAIS--DYNGHGTHVAGTIAAND-------- 99
Query: 248 FNYGYASGMAPGARIAVYKAL--YTFGGYMADVVAAVDQAVEDGVDIISLSV-GPSAVPS 304
+ G +G+AP A + + K L G ++ ++ AVE VDIIS+S+ GPS VP
Sbjct: 100 -SNGGIAGVAPEASLLIVKVLGGENGSGQYEWIINGINYAVEQKVDIISMSLGGPSDVPE 158
Query: 305 GPAAFLNALEMELLFATKAGVLVVQAAGNSG 335
A NA+ K GVLVV AAGN G
Sbjct: 159 LKEAVKNAV--------KNGVLVVCAAGNEG 181
|
Major intracellular protease produced by Bacillus subtilis. Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|Q99405|PRTM_BACSK M-protease OS=Bacillus clausii (strain KSM-K16) GN=aprE PE=1 SV=2 | Back alignment and function description |
|---|
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 10/68 (14%)
Query: 556 NIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAI 615
+I+APG ++ + + G +A L+GTSMATPH+AGVAAL+KQ++P WS I
Sbjct: 302 DIVAPGVNVQSTY----------PGSTYASLNGTSMATPHVAGVAALVKQKNPSWSNVQI 351
Query: 616 TSAMMTSA 623
+ + +A
Sbjct: 352 RNHLKNTA 359
|
Bacillus clausii (strain KSM-K16) (taxid: 66692) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P20724|ELYA_BACYA Alkaline elastase YaB OS=Bacillus sp. (strain YaB) GN=ale PE=1 SV=1 | Back alignment and function description |
|---|
Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 10/68 (14%)
Query: 556 NIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAI 615
+I+APG + + + G +A +GTSMATPH+AGVAAL+KQ++P WS I
Sbjct: 300 DIVAPGVGVQST----------VPGNGYASFNGTSMATPHVAGVAALVKQKNPSWSNVQI 349
Query: 616 TSAMMTSA 623
+ + +A
Sbjct: 350 RNHLKNTA 357
|
Digests elastin efficiently, has a substrate preference for Ala in P1 position. Bacillus sp. (strain YaB) (taxid: 72578) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 813 | ||||||
| 224138728 | 827 | predicted protein [Populus trichocarpa] | 0.982 | 0.966 | 0.688 | 0.0 | |
| 255566753 | 804 | peptidase, putative [Ricinus communis] g | 0.984 | 0.995 | 0.702 | 0.0 | |
| 350538581 | 809 | meiotic serine proteinase [Solanum lycop | 0.979 | 0.983 | 0.660 | 0.0 | |
| 1732367 | 801 | proteinase TMP [Solanum lycopersicum] | 0.969 | 0.983 | 0.653 | 0.0 | |
| 431176 | 813 | serine proteinase [Lilium longiflorum] | 0.976 | 0.976 | 0.618 | 0.0 | |
| 222629298 | 882 | hypothetical protein OsJ_15646 [Oryza sa | 0.977 | 0.901 | 0.542 | 0.0 | |
| 297603112 | 815 | Os04g0543700 [Oryza sativa Japonica Grou | 0.982 | 0.980 | 0.542 | 0.0 | |
| 38345951 | 836 | OSJNBb0038F03.4 [Oryza sativa Japonica G | 0.982 | 0.955 | 0.538 | 0.0 | |
| 218195307 | 882 | hypothetical protein OsI_16841 [Oryza sa | 0.977 | 0.901 | 0.542 | 0.0 | |
| 50845224 | 814 | meiotic serine protease [Oryza sativa In | 0.982 | 0.981 | 0.537 | 0.0 |
| >gi|224138728|ref|XP_002326675.1| predicted protein [Populus trichocarpa] gi|222833997|gb|EEE72474.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1154 bits (2986), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 569/826 (68%), Positives = 658/826 (79%), Gaps = 27/826 (3%)
Query: 7 ILLFSFITIWDFLPLNAKVFIVLMDEEPVTSLKLERSYDRN--------ETDAIVYKERI 58
IL SF+ I D L AKV IVLMD+EPV S K ++++ R E ++ YKER+
Sbjct: 8 ILFISFVIIVDPLRAEAKVLIVLMDDEPVFSFKSKQAHSRKSNLTPHRIEEASLAYKERL 67
Query: 59 SGGHDRFLESLLHGHSYTKLYSYTHLLSGFAIHIESEEAVSTLQNAKGVRIIHEDIKMEK 118
HD FLESLL +Y KLYSYTHLL+GFA++++S+E + TL+NA GVR IHED+KMEK
Sbjct: 68 RTSHDVFLESLLLKDTYNKLYSYTHLLNGFAVNVQSKEVLRTLKNATGVRAIHEDVKMEK 127
Query: 119 LTMHTPEFLGIPVGVWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFK 178
T HTP FLGIP GVWP LGGAE SGEGV+IGFIDTGINP HPSF S + SKFK
Sbjct: 128 FTTHTPRFLGIPTGVWPILGGAESSGEGVIIGFIDTGINPLHPSFTGGSSARFTNSSKFK 187
Query: 179 GKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYASPFDADGHGS--------- 229
GKC TG +FPSTACN KIVGAQYFARAAIA GDFN+TRDYASP+DADGHG
Sbjct: 188 GKCVTGEKFPSTACNGKIVGAQYFARAAIAAGDFNATRDYASPYDADGHGRQVIPSAVAF 247
Query: 230 --HTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFGGYMADVVAAVDQAVE 287
H STAAGNH++PVI + FNYGYASGMAPGARIAVYKALYTFGGYM+DVVAAVDQAVE
Sbjct: 248 FLHDTSTAAGNHQIPVIANDFNYGYASGMAPGARIAVYKALYTFGGYMSDVVAAVDQAVE 307
Query: 288 DGVDIISLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSSSILSFSPW 347
DGVDI+SLS+GPS+VPSGP+AFLN LEMELLFATKAGV VVQAAGN GPS SSILSFSPW
Sbjct: 308 DGVDILSLSIGPSSVPSGPSAFLNVLEMELLFATKAGVFVVQAAGNGGPSPSSILSFSPW 367
Query: 348 ITSIAASITDRKYNNTIKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSL 407
ITS+AASI DRKY+N+I L NG SFSG GLAPPT G + Y + AAADV HRN +T + +
Sbjct: 368 ITSVAASIIDRKYSNSIILGNGRSFSGTGLAPPTAGEMPYRIVAAADVSHRN-TTSVLEV 426
Query: 408 ESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPDQDFS 467
ESCQ+PE FI + VR KL+ICTY+FDFE + A+IA VA+ I+KI AAGFI+ MDPD
Sbjct: 427 ESCQHPEHFILSSVRNKLVICTYTFDFEYEAASIAAVANTIQKIGAAGFIITMDPDIGSE 486
Query: 468 PNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHG 527
K M + VP IILNN+QSS L EYYNS+TI+S +GQAV F ARARI+DGRRA +
Sbjct: 487 QVKGTTMTMQVPAIILNNIQSSRALWEYYNSNTIRSTSGQAVGFAARARIMDGRRAFFTR 546
Query: 528 QAPVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLS 587
QAP+VASYSSRGPDV+NALLQTADVLKPN+MAPGSSIWAAWSP+SEGDP++KG+NFAL+S
Sbjct: 547 QAPIVASYSSRGPDVSNALLQTADVLKPNVMAPGSSIWAAWSPNSEGDPSIKGQNFALVS 606
Query: 588 GTSMATPHIAGVAALIKQRHPKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHV 647
GTSMATPHIAGVAALIKQ+HP+WSPAAITSAMMT+A DHSGSPILAQ L +
Sbjct: 607 GTSMATPHIAGVAALIKQKHPRWSPAAITSAMMTTASTFDHSGSPILAQ-------LTNQ 659
Query: 648 LVHATPFDFGAGFINPARAIDPGLIFNAHFQEYVQFLCAVPGVDDDYVRRVTGYGCPTEN 707
+ ATPFDFGAGFINP AIDPGL+F++HF++YVQFLCAVPGVD+ VRR G CPT
Sbjct: 660 IAPATPFDFGAGFINPVHAIDPGLVFDSHFEQYVQFLCAVPGVDEGSVRRAVGTSCPTNR 719
Query: 708 QGWCSDLNTPSITISNLVGSRKVIRRVRNVSSANETYTVTVKEPSGVKVSVSPQVFKIRG 767
+ WCSDLNT S+TISNLVGSRKVIR V NVSS NE Y VTV++PSGV V+VSP+V I G
Sbjct: 720 RAWCSDLNTASVTISNLVGSRKVIRSVTNVSSRNEVYRVTVRQPSGVNVTVSPRVVVING 779
Query: 768 LASRELKIVLKATNSTRAYSFGAMVLQGNNNHIIRIPIAVYVSTSL 813
AS+ L+IVL A +TR Y+FG MVL G+ H++R+PIAVYVSTSL
Sbjct: 780 NASKHLRIVLTAIKATRTYTFGEMVLHGSRKHVVRVPIAVYVSTSL 825
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255566753|ref|XP_002524360.1| peptidase, putative [Ricinus communis] gi|223536321|gb|EEF37971.1| peptidase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1139 bits (2945), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 571/813 (70%), Positives = 659/813 (81%), Gaps = 13/813 (1%)
Query: 1 MAFCTFILLFSFITIWDFLPLNAKVFIVLMDEEPVTSLKLERSYDRNETDAIVYKERISG 60
+ F FI + F ++ L + AKVF++LMDEEPV + K + + R E + + YKE +S
Sbjct: 5 ITFAFFIFVVKF---FELLQIEAKVFMILMDEEPVFAFKSKYTNPRIE-EVMDYKESLSN 60
Query: 61 GHDRFLESLLHGHSYTKLYSYTHLLSGFAIHIESEEAVSTLQNAKGVRIIHEDIKMEKLT 120
HD FLESLL +YTKLYSYTHLL+G A+H+ESEE S L+NA+GVR IHED KMEKLT
Sbjct: 61 SHDLFLESLLQKGTYTKLYSYTHLLNGVAVHVESEEVSSILKNARGVRAIHEDTKMEKLT 120
Query: 121 MHTPEFLGIPVGVWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGK 180
HTP+FLGIP G+WP+LGG E SGEGVVIG IDTGINP HPSF + S G+ + +KF+G+
Sbjct: 121 THTPDFLGIPAGIWPSLGGPERSGEGVVIGMIDTGINPYHPSFTNMSM-GSINSTKFRGQ 179
Query: 181 CTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHR 240
C TG FP TACN KIVGAQYFARAAIA GDF ++RD+ASPFDADGHGSHTASTAAGNH+
Sbjct: 180 CATGENFPLTACNGKIVGAQYFARAAIAAGDFITSRDFASPFDADGHGSHTASTAAGNHQ 239
Query: 241 VPVIVSGFNYGYASGMAPGARIAVYKALYTFGGYMADVVAAVDQAVEDGVDIISLSVGPS 300
+PVI + FNYG ASGMAPGARIAVYKALYTFGGYM+DVVAAV++AVEDGVDI+SLS+GPS
Sbjct: 240 IPVIANDFNYGNASGMAPGARIAVYKALYTFGGYMSDVVAAVEKAVEDGVDILSLSIGPS 299
Query: 301 AVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSSSILSFSPWITSIAASITDRKY 360
+VP GP+AFLN LEMELLFATKAG+ VVQAAGN GPSSSS+LSFSPWITS AASITDRKY
Sbjct: 300 SVPPGPSAFLNVLEMELLFATKAGIFVVQAAGNGGPSSSSVLSFSPWITSAAASITDRKY 359
Query: 361 NNTIKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPAL 420
NNTI L NG SFSG GLAPPT G V + LAAAADV H NV T + +ESCQ+PE FI +L
Sbjct: 360 NNTIILGNGKSFSGTGLAPPTSGEVPFLLAAAADVSHGNV-TSVVEVESCQHPEHFIKSL 418
Query: 421 VRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVPG 480
V KLIICTY+FDFE +DA+IATV D I++I AAGFI+ MDPD K M + VP
Sbjct: 419 VWEKLIICTYTFDFEYEDASIATVEDTIQQIGAAGFIITMDPDISSEQIKGTTMTMRVPA 478
Query: 481 IILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPVVASYSSRGP 540
IILN MQ+S L EYYNS+TI+SR+GQAV F A ARILDGR+A + GQAP+VASYSSRGP
Sbjct: 479 IILNTMQASSALWEYYNSNTIRSRSGQAVAFSATARILDGRQAFFTGQAPIVASYSSRGP 538
Query: 541 DVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVA 600
DVNNALLQTADVLKPNIMAPGSSIWAAWSP SEGDP +KG+NFAL+SGTSMATPHIAGVA
Sbjct: 539 DVNNALLQTADVLKPNIMAPGSSIWAAWSPDSEGDPYVKGQNFALVSGTSMATPHIAGVA 598
Query: 601 ALIKQRHPKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGF 660
ALIKQ+HPKWSPAAITSAMMT+A+ TD GSPILAQ + L ATPFDFGAG
Sbjct: 599 ALIKQKHPKWSPAAITSAMMTTADTTDCFGSPILAQSSNQ-------LAPATPFDFGAGS 651
Query: 661 INPARAIDPGLIFNAHFQEYVQFLCAVPGVDDDYVRRVTGYGCPTENQGWCSDLNTPSIT 720
INPARAIDPGLIF+A F+ YVQFLCAVPGVDD+ VRR G GCP + WCSDLNT S+T
Sbjct: 652 INPARAIDPGLIFDARFEHYVQFLCAVPGVDDESVRRAVGIGCPIRGRAWCSDLNTASVT 711
Query: 721 ISNLVGSRKVIRRVRNVSSANETYTVTVKEPSGVKVSVSPQVFKIRGLASRELKIVLKAT 780
ISNLVGSRKVIRRV NVS NE Y VTV+EP GV V+V PQVF +RG ASR +I+LKA
Sbjct: 712 ISNLVGSRKVIRRVTNVSRRNEVYRVTVREPLGVNVTVKPQVFWVRGNASRHFRILLKAR 771
Query: 781 NSTRAYSFGAMVLQGNNNHIIRIPIAVYVSTSL 813
+ R Y+FG ++L G+ NH++R+PIAVYVST+L
Sbjct: 772 KAMRTYTFGEIILYGSRNHVVRVPIAVYVSTTL 804
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|350538581|ref|NP_001234350.1| meiotic serine proteinase [Solanum lycopersicum] gi|6468325|gb|AAF13299.1|AF181496_1 meiotic serine proteinase [Solanum lycopersicum] | Back alignment and taxonomy information |
|---|
Score = 1109 bits (2868), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 538/815 (66%), Positives = 654/815 (80%), Gaps = 19/815 (2%)
Query: 5 TFILLFSFITIWDFLPLNAKVFIVLMDEEPVTSLKLERSYDRNETDAIVYKERISGGHDR 64
TFI L SFIT W L NAK+F+VLM ++P S + +N D +YKER+ HD
Sbjct: 6 TFIAL-SFITTWVPLLANAKIFMVLMKDDPFVSTE-----SKNLEDVNIYKERMRRQHDM 59
Query: 65 FLESLLHGHSYTKLYSYTHLLSGFAIHIESEEAVSTLQNAKGVRIIHEDIKMEKLTMHTP 124
L SLL YTK+YSYTHL++GFAIH+ S+EA+ L+N +GVR I+ED+KM+KLT HTP
Sbjct: 60 LLGSLLEKSVYTKVYSYTHLINGFAIHLTSDEALDVLRNVEGVRAIYEDVKMKKLTTHTP 119
Query: 125 EFLGIPVGVWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSIS-----KFKG 179
+FLG+PVGVWP LGG SG GVVIG IDTGINP HPSF + + G + KFKG
Sbjct: 120 DFLGLPVGVWPKLGGPTTSGAGVVIGMIDTGINPFHPSFLAQASNGAGRGTIVRSGKFKG 179
Query: 180 KCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNH 239
KC TG+RFP TACNSKIVGAQYFARAA A G+FN++R YASPFDADGHGSHTASTAAGNH
Sbjct: 180 KCVTGDRFPETACNSKIVGAQYFARAATAAGEFNTSRGYASPFDADGHGSHTASTAAGNH 239
Query: 240 RVPVIVSGFNYGYASGMAPGARIAVYKALYTFGGYMADVVAAVDQAVEDGVDIISLSVGP 299
+VPVIV+ FNYGYASGMAPGA IAVYKA+Y+FGG+M+DVVAAVDQAVEDGVDI+SLSVGP
Sbjct: 240 QVPVIVNHFNYGYASGMAPGAGIAVYKAMYSFGGFMSDVVAAVDQAVEDGVDILSLSVGP 299
Query: 300 SAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSSSILSFSPWITSIAASITDRK 359
++VP+GP+AFLN LEM+LLFAT+AGVLVVQAAGN GPSS+SILSFSPWITS+AAS TDR+
Sbjct: 300 ASVPTGPSAFLNVLEMQLLFATRAGVLVVQAAGNGGPSSTSILSFSPWITSVAASTTDRR 359
Query: 360 YNNTIKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPA 419
YNN+I L NG SFSG GL+PPTL V++PLAAA++VC N S+ + ++ESCQ E FI
Sbjct: 360 YNNSIVLGNGQSFSGSGLSPPTLSEVHFPLAAASNVCKGNTSSALLTVESCQETEPFIRT 419
Query: 420 LVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVP 479
LV+GK++ICTY+FDFE++ A+IATVAD I+++ AAGF+L MDPD K M L VP
Sbjct: 420 LVQGKIVICTYTFDFESEAASIATVADTIQEVGAAGFVLTMDPDISSEKIKGATMTLTVP 479
Query: 480 GIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPVVASYSSRG 539
G+ILN+M++S L EYYNS+T++SR+G+A+ F A A+ILDGR+A Y+ Q P VASYSSRG
Sbjct: 480 GLILNSMEASTALREYYNSNTLRSRSGRAISFRATAKILDGRQASYNSQDPFVASYSSRG 539
Query: 540 PDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGV 599
PDVNNALL TADVLKPNIMAPGSSIWA+WSP+SEGD ++KG+NFALLSGTSMATPHIAG+
Sbjct: 540 PDVNNALLDTADVLKPNIMAPGSSIWASWSPNSEGDQHIKGQNFALLSGTSMATPHIAGI 599
Query: 600 AALIKQRHPKWSPAAITSAMMTSAEVTD-HSGSPILAQDYSDSPILEHVLVHATPFDFGA 658
AALIKQ+HP WSPAAITSAMMT+A+VT+ +S +PILAQ + L ATPFDFG+
Sbjct: 600 AALIKQKHPGWSPAAITSAMMTTADVTNGYSSTPILAQQTNQ-------LTPATPFDFGS 652
Query: 659 GFINPARAIDPGLIFNAHFQEYVQFLCAVPGVDDDYVRRVTGYGCPTENQGWCSDLNTPS 718
G +NP+RAIDPGLIF A F+ YV FLC+VPGVD+ VRR G GCP++ + WCSDLNTPS
Sbjct: 653 GLVNPSRAIDPGLIFKASFKHYVLFLCSVPGVDEMSVRRAVGVGCPSKKKAWCSDLNTPS 712
Query: 719 ITISNLVGSRKVIRRVRNVSSANETYTVTVKEPSGVKVSVSPQVFKIRGLASRELKIVLK 778
+TISNLVGSR VIRRV NV+ +ETY V V+EP GV V+V P+VF I AS+ + VL
Sbjct: 713 VTISNLVGSRNVIRRVTNVAGVDETYQVIVQEPLGVSVTVRPRVFNIIAKASKHITFVLN 772
Query: 779 ATNSTRAYSFGAMVLQGNNNHIIRIPIAVYVSTSL 813
AT +T YSFG +V QGN NH +R+P+AV+VS++L
Sbjct: 773 ATQTTNTYSFGEIVFQGNQNHTVRVPLAVFVSSTL 807
|
Source: Solanum lycopersicum Species: Solanum lycopersicum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|1732367|gb|AAB38743.1| proteinase TMP [Solanum lycopersicum] | Back alignment and taxonomy information |
|---|
Score = 1091 bits (2822), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 533/815 (65%), Positives = 645/815 (79%), Gaps = 27/815 (3%)
Query: 5 TFILLFSFITIWDFLPLNAKVFIVLMDEEPVTSLKLERSYDRNETDAIVYKERISGGHDR 64
TFI L SFIT W L NAK+F+VLM ++P S + +N D +YKER+ HD
Sbjct: 6 TFIAL-SFITTWVPLLANAKIFMVLMKDDPFVSTE-----SKNLEDVNIYKERMRRQHDM 59
Query: 65 FLESLLHGHSYTKLYSYTHLLSGFAIHIESEEAVSTLQNAKGVRIIHEDIKMEKLTMHTP 124
L SLL YTK+YSYTHL++GFAIH+ S+EA+ L+N +GVR I+ED+KM+KLT HTP
Sbjct: 60 LLGSLLEKSVYTKVYSYTHLINGFAIHLTSDEALDVLRNVEGVRAIYEDVKMKKLTTHTP 119
Query: 125 EFLGIPVGVWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQ-----SISKFKG 179
+FLG+PVGVWP LGG SG GVVIG IDTGINP HPSF + + G KFKG
Sbjct: 120 DFLGLPVGVWPKLGGPTTSGAGVVIGMIDTGINPFHPSFLAQASNGAGRGTIVKSGKFKG 179
Query: 180 KCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNH 239
KC G+RFP TACNSKIVGAQYFARAA A G+FN++RDYASPFDADGHGSHTASTAAGNH
Sbjct: 180 KCVIGDRFPETACNSKIVGAQYFARAATAAGEFNASRDYASPFDADGHGSHTASTAAGNH 239
Query: 240 RVPVIVSGFNYGYASGMAPGARIAVYKALYTFGGYMADVVAAVDQAVEDGVDIISLSVGP 299
+VPVIV+ FNYGYASGMAPGA IAVYKA+Y+FGG+M+DVVAAVDQAVEDGVDI+SLSVGP
Sbjct: 240 QVPVIVNHFNYGYASGMAPGAGIAVYKAMYSFGGFMSDVVAAVDQAVEDGVDILSLSVGP 299
Query: 300 SAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSSSILSFSPWITSIAASITDRK 359
++VP+GP+AFLN LEM+LLFAT+AGVLVVQAAGN GPSS+SILSFSPWITS+AAS TDR+
Sbjct: 300 ASVPTGPSAFLNVLEMQLLFATRAGVLVVQAAGNGGPSSTSILSFSPWITSVAASTTDRR 359
Query: 360 YNNTIKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPA 419
YNN+I L NG SFSG GL+PPTL V++PLAAA+DVC N S+ + ++ESCQ E FI
Sbjct: 360 YNNSIVLGNGQSFSGSGLSPPTLSEVHFPLAAASDVCKGNTSSALLTVESCQETEPFIRT 419
Query: 420 LVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVP 479
LV+GK++ICTY+FDFE++ A+IATVAD I+++ AAGF+L MDPD K M L VP
Sbjct: 420 LVQGKIVICTYTFDFESEAASIATVADTIQEVGAAGFVLTMDPDISSEKIKGATMTLTVP 479
Query: 480 GIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPVVASYSSRG 539
G+ILN+M++S L EYYNS+T++SR+G+A+ F A A+ILDGR+A Y+ Q P VASYSSRG
Sbjct: 480 GLILNSMEASTALREYYNSNTLRSRSGRAISFRATAKILDGRQASYNSQDPFVASYSSRG 539
Query: 540 PDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGV 599
PDVNNALL TADVLKPNIMAPGSSIWA+WSP+ + NFALLSGTSMATPHIAG+
Sbjct: 540 PDVNNALLDTADVLKPNIMAPGSSIWASWSPNRQ--------NFALLSGTSMATPHIAGI 591
Query: 600 AALIKQRHPKWSPAAITSAMMTSAEVTD-HSGSPILAQDYSDSPILEHVLVHATPFDFGA 658
AALIKQ+HP WSPAAITSAMMT+A+VT+ +S +PILAQ + L ATPFDFG+
Sbjct: 592 AALIKQKHPGWSPAAITSAMMTTADVTNGYSSTPILAQQTNQ-------LTPATPFDFGS 644
Query: 659 GFINPARAIDPGLIFNAHFQEYVQFLCAVPGVDDDYVRRVTGYGCPTENQGWCSDLNTPS 718
G +NP+RAIDPGLIF A F+ YV FLC+VPGVD+ VRR G GCP++ + WCSDLNTPS
Sbjct: 645 GLVNPSRAIDPGLIFKASFKHYVLFLCSVPGVDEMSVRRAVGVGCPSKKKAWCSDLNTPS 704
Query: 719 ITISNLVGSRKVIRRVRNVSSANETYTVTVKEPSGVKVSVSPQVFKIRGLASRELKIVLK 778
+TISNLVGSR VIRRV NV+ +ETY V V+EP GV V+V P+VF I AS+ + VL
Sbjct: 705 VTISNLVGSRNVIRRVTNVAGVDETYQVIVQEPLGVSVTVRPRVFNIIAKASKHITFVLN 764
Query: 779 ATNSTRAYSFGAMVLQGNNNHIIRIPIAVYVSTSL 813
AT +T YSFG +V QGN NH +R+P+AV+VS++L
Sbjct: 765 ATQTTNTYSFGEIVFQGNQNHTVRVPLAVFVSSTL 799
|
Source: Solanum lycopersicum Species: Solanum lycopersicum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|431176|dbj|BAA04839.1| serine proteinase [Lilium longiflorum] | Back alignment and taxonomy information |
|---|
Score = 988 bits (2555), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 503/813 (61%), Positives = 608/813 (74%), Gaps = 19/813 (2%)
Query: 1 MAFCTFILLFSFITIWDFLPLNAKVFIVLMDEEPVTSLKLERSYDRNETDAIVYKERISG 60
MAF + L + + + L KVF+VLM+E+PV + K +N DA YK+R+
Sbjct: 19 MAFSIALQLITLLAYLNAFVLGGKVFMVLMEEDPVITYKT-----KNSDDAQKYKQRVIS 73
Query: 61 GHDRFLESLLHGHSYTKLYSYTHLLSGFAIHIESEEAVSTLQNAKGVRIIHEDIKMEKLT 120
HD FLESLL SY KLYSYTHLL+GFAIH S+EAV L++A GVR++ ED+KM K+T
Sbjct: 74 QHDIFLESLLPIGSYKKLYSYTHLLNGFAIHATSDEAVEILRDAHGVRVVQEDVKMMKMT 133
Query: 121 MHTPEFLGIPVGVWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGK 180
HTP++LGI GVWP LGGAE SG+GVVIG IDTGINP HPSF + R + +FKG+
Sbjct: 134 THTPDYLGIQTGVWPELGGAERSGDGVVIGMIDTGINPNHPSFMNPWSREVADLKRFKGR 193
Query: 181 CTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHR 240
C G++FP T+CN KIVGAQYFA AIA G+FN+TRDYASPFDADGHGSHTASTAAGN+R
Sbjct: 194 CVPGDQFPLTSCNGKIVGAQYFAHGAIAVGEFNATRDYASPFDADGHGSHTASTAAGNYR 253
Query: 241 VPVIVSGFNYGYASGMAPGARIAVYKALYTFGGYMADVVAAVDQAVEDGVDIISLSVGPS 300
V V+ +G+N+GYASGMAPGA IAVYKALY+FGGYM+DVVAAVD+AVEDGVDIISLSVGPS
Sbjct: 254 VAVLSNGYNFGYASGMAPGAWIAVYKALYSFGGYMSDVVAAVDKAVEDGVDIISLSVGPS 313
Query: 301 AVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSSSILSFSPWITSIAASITDRKY 360
AVPSGP AFL+ LE+ELLFATKAGV VVQA GN GPSSSSILSFSPWI S+AASITDR+Y
Sbjct: 314 AVPSGPTAFLDILEVELLFATKAGVTVVQAIGNGGPSSSSILSFSPWIMSVAASITDRQY 373
Query: 361 NNTIKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPAL 420
NNTI L+NGHS SGIGL+PPT R P+AAA DVC RN T L SCQ P+ FI +L
Sbjct: 374 NNTIILSNGHSISGIGLSPPTPERELIPIAAAEDVCSRN--TSFVVLRSCQSPDPFISSL 431
Query: 421 VRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVPG 480
VRGKLIICT + D + +I + I+KI A G I+ MD D + P A VPG
Sbjct: 432 VRGKLIICTLTTD-SSSPMSIEAILSTIQKIGAVGVIITMDHDIEPEPPSGGASAFPVPG 490
Query: 481 IILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPVVASYSSRGP 540
I+L N +S L EYY+ HT++ R G + F A RILDGRRAIY GQ+P+VA YSSRGP
Sbjct: 491 IVLINSDASEALWEYYSGHTLRGRNGAVISFGATGRILDGRRAIYTGQSPMVARYSSRGP 550
Query: 541 DVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVA 600
DVNNALLQTADVLKPNI+APG+SIWAAWS +S +G NFAL SGTSMATPH+AG+A
Sbjct: 551 DVNNALLQTADVLKPNILAPGTSIWAAWSSNST-----EGENFALQSGTSMATPHVAGIA 605
Query: 601 ALIKQRHPKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGF 660
ALIKQ HP WSPAAI SA+MT+A+V D +LAQ + P ATPFD+GAG
Sbjct: 606 ALIKQMHPNWSPAAIASAIMTTAQVVDSYDHALLAQQATTDP------STATPFDYGAGA 659
Query: 661 INPARAIDPGLIFNAHFQEYVQFLCAVPGVDDDYVRRVTGYGCPTENQGWCSDLNTPSIT 720
INPA+AI+PGLIF+A F+ Y+QFLCAVPGVD++ VRR G GCP+++ WCSDLNTPS+T
Sbjct: 660 INPAQAINPGLIFDADFKNYIQFLCAVPGVDEESVRRAVGVGCPSQHTDWCSDLNTPSVT 719
Query: 721 ISNLVGSRKVIRRVRNVSSANETYTVTVKEPSGVKVSVSPQVFKIRGLASRELKIVLKAT 780
++NLVGSR+V+R+V +V ETY VK PSGV V+V+P F I S+ L I+L A
Sbjct: 720 VANLVGSRRVLRKVMSVGDEQETYKAMVKSPSGVSVTVTPSAFTINPNTSKGLAILLDAV 779
Query: 781 NSTRAYSFGAMVLQGNNNHIIRIPIAVYVSTSL 813
T AY+FG +VL G+ H++RIP+ V+VS++L
Sbjct: 780 EVTNAYTFGEVVLNGDKKHVVRIPLVVFVSSTL 812
|
Source: Lilium longiflorum Species: Lilium longiflorum Genus: Lilium Family: Liliaceae Order: Liliales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|222629298|gb|EEE61430.1| hypothetical protein OsJ_15646 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 861 bits (2224), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 448/826 (54%), Positives = 579/826 (70%), Gaps = 31/826 (3%)
Query: 1 MAFCTFILLFSFITIWDFLPLN-------AKVFIVLMDEEPVTSLKLERSYDRNETDAIV 53
MAFC L+F ++ FL LN AKVF+V+M+++P+ S K + +A
Sbjct: 73 MAFCKPCLVF--YSVLTFLILNGGPSHVLAKVFMVVMEDDPIISPKSSQKKVMRGEEAQK 130
Query: 54 YKERISGGHDRFLESLLHGHSYTKLYSYTHLLSGFAIHIESEEAVSTLQNAKGVRIIHED 113
YK + HD FL+S L SY KLYSYTHLL+GFAI+ +SE+A+ TL AKGVR+I ED
Sbjct: 131 YKAMTTTKHDIFLDSFLPAGSYKKLYSYTHLLNGFAIYAKSEKAIKTLSGAKGVRLIQED 190
Query: 114 IKMEKLTMHTPEFLGIPVGVWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQS 173
IKM K+T +TP ++G V VWP LGGAE +G+GVVIG +DTGI+P +PSF S S +
Sbjct: 191 IKMAKMTTYTPRYIGANV-VWPLLGGAEKAGDGVVIGMVDTGIDPSNPSFLSTSDQAKPP 249
Query: 174 ISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYASPFDADGHGSHTAS 233
+ FKG C TG RFP +CN KIVGA++FARA A G+FN+T YASP+D DGHGSHTAS
Sbjct: 250 PASFKGTCQTGERFPPDSCNGKIVGARWFARAGQATGEFNATMHYASPYDPDGHGSHTAS 309
Query: 234 TAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFGGYMADVVAAVDQAVEDGVDII 293
TAAGN P I G+N+G+ASG+APGA +A+YKA Y+FGGYM+DV+AAVD+AVEDGVDII
Sbjct: 310 TAAGNFHTPAISKGYNFGHASGVAPGAHLAIYKAAYSFGGYMSDVIAAVDKAVEDGVDII 369
Query: 294 SLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSSSILSFSPWITSIAA 353
SLS+GP+ + SGPA+FLN LE +LL ATKAG+ VVQA GN GP ++S++SFSPWITS+ A
Sbjct: 370 SLSLGPTTITSGPASFLNLLETQLLLATKAGISVVQAVGNGGPDANSVVSFSPWITSVGA 429
Query: 354 SITDRKYNNTIKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYP 413
S TDRKYN +I + NG FS GL+P T G YPLA A DVC+ N STG S +CQ P
Sbjct: 430 STTDRKYNKSIIIGNGQVFSCGGLSPSTPGETMYPLALADDVCNTN-STGGSS--NCQDP 486
Query: 414 ELFIPALVRGKLIICTY--SFDFENDDATIATVADNIKKIEAAGFIL----RMDPDQDFS 467
++FI +LV+GK+IIC + S +E D +A + D I+KI AAG I+ D D ++
Sbjct: 487 DVFIRSLVQGKVIICMFVSSNYYEGD--FLAGIVDTIQKIGAAGVIITDRSSSDSDIEYH 544
Query: 468 PNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHG 527
P +P I+ N + LLEYY+ + ++ + G F A RILDGRRAIY
Sbjct: 545 PT----FPTSIPSAIVVNSADAQALLEYYDDNLVRDKEGSVTKFGATIRILDGRRAIYTR 600
Query: 528 QAPVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLS 587
+APVVA YSSRGPDV++ +Q ADVLKPN+MAPG IW AWSP+S+ +G ++A+LS
Sbjct: 601 EAPVVAEYSSRGPDVDDMQMQAADVLKPNVMAPGHHIWGAWSPTSDAMVEFQGESYAMLS 660
Query: 588 GTSMATPHIAGVAALIKQRHPKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHV 647
GTSMATPH+AGV ALI+QRHPKWSPA + SA+MT+A+VTD SG P++A+ D +LE
Sbjct: 661 GTSMATPHVAGVVALIRQRHPKWSPAMVMSAIMTTADVTDRSGRPLMAR--RDGGVLE-- 716
Query: 648 LVHATPFDFGAGFINPARAIDPGLIFNAHFQEYVQFLCAVPGVDDDYVRRVTGYGCPTEN 707
ATPFD GAG IN ARA+DPGL+F+A +++Y+QFLCAVPGVDD V R G CP
Sbjct: 717 --RATPFDMGAGAINAARAVDPGLVFDAGYRDYLQFLCAVPGVDDAAVLRAVGVPCPPSR 774
Query: 708 QGWCSDLNTPSITISNLVGSRKVIRRVRNVSSANETYTVTVKEPSGVKVSVSPQVFKIRG 767
WCSDLN PS+T+++LVGSR+V RRV +V + NETY V+ P GV V VSP F +
Sbjct: 775 ARWCSDLNAPSVTVASLVGSRRVDRRVTSVGAENETYMAHVQAPDGVAVRVSPDTFAVAP 834
Query: 768 LASRELKIVLKATNSTRAYSFGAMVLQGNNNHIIRIPIAVYVSTSL 813
A+ L+IVL T +SFG +VL+G+ H +RIP+AV+ + +L
Sbjct: 835 GATATLRIVLNTTAPGNTFSFGEVVLRGDKKHTVRIPLAVFPAAAL 880
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297603112|ref|NP_001053456.2| Os04g0543700 [Oryza sativa Japonica Group] gi|255675656|dbj|BAF15370.2| Os04g0543700, partial [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 859 bits (2220), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 446/822 (54%), Positives = 575/822 (69%), Gaps = 23/822 (2%)
Query: 1 MAFCTFILLFSFITIWDFLPLN-------AKVFIVLMDEEPVTSLKLERSYDRNETDAIV 53
MAFC L+F ++ FL LN AKVF+V+M+++P+ S K + +A
Sbjct: 6 MAFCKPCLVF--YSVLTFLILNGGPSHVLAKVFMVVMEDDPIISPKSSQKKVMRGEEAQK 63
Query: 54 YKERISGGHDRFLESLLHGHSYTKLYSYTHLLSGFAIHIESEEAVSTLQNAKGVRIIHED 113
YK + HD FL+S L SY KLYSYTHLL+GFAI+ +SE+A+ TL AKGVR+I ED
Sbjct: 64 YKAMTTTKHDIFLDSFLPAGSYKKLYSYTHLLNGFAIYAKSEKAIKTLSGAKGVRLIQED 123
Query: 114 IKMEKLTMHTPEFLGIPVGVWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQS 173
IKM K+T +TP ++G V VWP LGGAE +G+GVVIG +DTGI+P +PSF S S +
Sbjct: 124 IKMAKMTTYTPRYIGANV-VWPLLGGAEKAGDGVVIGMVDTGIDPSNPSFLSTSDQAKPP 182
Query: 174 ISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYASPFDADGHGSHTAS 233
+ FKG C TG RFP +CN KIVGA++FARA A G+FN+T YASP+D DGHGSHTAS
Sbjct: 183 PASFKGTCQTGERFPPDSCNGKIVGARWFARAGQATGEFNATMHYASPYDPDGHGSHTAS 242
Query: 234 TAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFGGYMADVVAAVDQAVEDGVDII 293
TAAGN P I G+N+G+ASG+APGA +A+YKA Y+FGGYM+DV+AAVD+AVEDGVDII
Sbjct: 243 TAAGNFHTPAISKGYNFGHASGVAPGAHLAIYKAAYSFGGYMSDVIAAVDKAVEDGVDII 302
Query: 294 SLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSSSILSFSPWITSIAA 353
SLS+GP+ + SGPA+FLN LE +LL ATKAG+ VVQA GN GP ++S++SFSPWITS+ A
Sbjct: 303 SLSLGPTTITSGPASFLNLLETQLLLATKAGISVVQAVGNGGPDANSVVSFSPWITSVGA 362
Query: 354 SITDRKYNNTIKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYP 413
S TDRKYN +I + NG FS GL+P T G YPLA A DVC+ N STG S +CQ P
Sbjct: 363 STTDRKYNKSIIIGNGQVFSCGGLSPSTPGETMYPLALADDVCNTN-STGGSS--NCQDP 419
Query: 414 ELFIPALVRGKLIICTY--SFDFENDDATIATVADNIKKIEAAGFILRMDPDQDFSPNKF 471
++FI +LV+GK+IIC + S +E D +A + D I+KI AAG I+ D
Sbjct: 420 DVFIRSLVQGKVIICMFVSSNYYEGD--FLAGIVDTIQKIGAAGVIITDRSSSDSDIEYH 477
Query: 472 KDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPV 531
+P I+ N + LLEYY+ + ++ + G F A RILDGRRAIY +APV
Sbjct: 478 PTFPTSIPSAIVVNSADAQALLEYYDDNLVRDKEGSVTKFGATIRILDGRRAIYTREAPV 537
Query: 532 VASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSM 591
VA YSSRGPDV++ +Q ADVLKPN+MAPG IW AWSP+S+ +G ++A+LSGTSM
Sbjct: 538 VAEYSSRGPDVDDMQMQAADVLKPNVMAPGHHIWGAWSPTSDAMVEFQGESYAMLSGTSM 597
Query: 592 ATPHIAGVAALIKQRHPKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHA 651
ATPH+AGV ALI+QRHPKWSPA + SA+MT+A+VTD SG P++A+ D +LE A
Sbjct: 598 ATPHVAGVVALIRQRHPKWSPAMVMSAIMTTADVTDRSGRPLMAR--RDGGVLE----RA 651
Query: 652 TPFDFGAGFINPARAIDPGLIFNAHFQEYVQFLCAVPGVDDDYVRRVTGYGCPTENQGWC 711
TPFD GAG IN ARA+DPGL+F+A +++Y+QFLCAVPGVDD V R G CP WC
Sbjct: 652 TPFDMGAGAINAARAVDPGLVFDAGYRDYLQFLCAVPGVDDAAVLRAVGVPCPPSRARWC 711
Query: 712 SDLNTPSITISNLVGSRKVIRRVRNVSSANETYTVTVKEPSGVKVSVSPQVFKIRGLASR 771
SDLN PS+T+++LVGSR+V RRV +V + NETY V+ P GV V VSP F + A+
Sbjct: 712 SDLNAPSVTVASLVGSRRVDRRVTSVGAENETYMAHVQAPDGVAVRVSPDTFAVAPGATA 771
Query: 772 ELKIVLKATNSTRAYSFGAMVLQGNNNHIIRIPIAVYVSTSL 813
L+IVL T +SFG +VL+G+ H +RIP+AV+ + +L
Sbjct: 772 TLRIVLNTTAPGNTFSFGEVVLRGDKKHTVRIPLAVFPAAAL 813
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|38345951|emb|CAE04340.2| OSJNBb0038F03.4 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 859 bits (2220), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 443/822 (53%), Positives = 573/822 (69%), Gaps = 23/822 (2%)
Query: 1 MAFCTFILLFSFITIWDFLPLN-------AKVFIVLMDEEPVTSLKLERSYDRNETDAIV 53
MAFC L+F ++ FL LN AKVF+V+M+++P+ S K + +A
Sbjct: 27 MAFCKPCLVF--YSVLTFLILNGGPSHVLAKVFMVVMEDDPIISPKSSQKKVMRGEEAQK 84
Query: 54 YKERISGGHDRFLESLLHGHSYTKLYSYTHLLSGFAIHIESEEAVSTLQNAKGVRIIHED 113
YK + HD FL+S L SY KLYSYTHLL+GFAI+ +SE+A+ TL AKGVR+I ED
Sbjct: 85 YKAMTTTKHDIFLDSFLPAGSYKKLYSYTHLLNGFAIYAKSEKAIKTLSGAKGVRLIQED 144
Query: 114 IKMEKLTMHTPEFLGIPVGVWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQS 173
IKM K+T +TP ++G V VWP LGGAE +G+GVVIG +DTGI+P +PSF S S +
Sbjct: 145 IKMAKMTTYTPRYIGANV-VWPLLGGAEKAGDGVVIGMVDTGIDPSNPSFLSTSDQAKPP 203
Query: 174 ISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYASPFDADGHGSHTAS 233
+ FKG C TG RFP +CN KIVGA++FARA A G+FN+T YASP+D DGHGSHTAS
Sbjct: 204 PASFKGTCQTGERFPPDSCNGKIVGARWFARAGQATGEFNATMHYASPYDPDGHGSHTAS 263
Query: 234 TAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFGGYMADVVAAVDQAVEDGVDII 293
TAAGN P I G+N+G+ASG+APGA +A+YKA Y+FGGYM+DV+AAVD+AVEDGVDII
Sbjct: 264 TAAGNFHTPAISKGYNFGHASGVAPGAHLAIYKAAYSFGGYMSDVIAAVDKAVEDGVDII 323
Query: 294 SLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSSSILSFSPWITSIAA 353
SLS+GP+ + SGPA+FLN LE +LL ATKAG+ VVQA GN GP ++S++SFSPWITS+ A
Sbjct: 324 SLSLGPTTITSGPASFLNLLETQLLLATKAGISVVQAVGNGGPDANSVVSFSPWITSVGA 383
Query: 354 SITDRKYNNTIKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYP 413
S TDRKYN +I + NG FS GL+P T G YPLA A DVC+ N + G +CQ P
Sbjct: 384 STTDRKYNKSIIIGNGQVFSCGGLSPSTPGETMYPLALADDVCNTNSTGG---SSNCQDP 440
Query: 414 ELFIPALVRGKLIICTY--SFDFENDDATIATVADNIKKIEAAGFILRMDPDQDFSPNKF 471
++FI +LV+GK+IIC + S +E D +A + D I+KI AAG I+ D
Sbjct: 441 DVFIRSLVQGKVIICMFVSSNYYEGD--FLAGIVDTIQKIGAAGVIITDRSSSDSDIEYH 498
Query: 472 KDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPV 531
+P I+ N + LLEYY+ + ++ + G F A RILDGRRAIY +APV
Sbjct: 499 PTFPTSIPSAIVVNSADAQALLEYYDDNLVRDKEGSVTKFGATIRILDGRRAIYTREAPV 558
Query: 532 VASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSM 591
VA YSSRGPDV++ +Q ADVLKPN+MAPG IW AWSP+S+ +G ++A+LSGTSM
Sbjct: 559 VAEYSSRGPDVDDMQMQAADVLKPNVMAPGHHIWGAWSPTSDAMVEFQGESYAMLSGTSM 618
Query: 592 ATPHIAGVAALIKQRHPKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHA 651
ATPH+AGV ALI+QRHPKWSPA + SA+MT+A+VTD SG P++A+ D +LE A
Sbjct: 619 ATPHVAGVVALIRQRHPKWSPAMVMSAIMTTADVTDRSGRPLMAR--RDGGVLE----RA 672
Query: 652 TPFDFGAGFINPARAIDPGLIFNAHFQEYVQFLCAVPGVDDDYVRRVTGYGCPTENQGWC 711
TPFD GAG IN ARA+DPGL+F+A +++Y+QFLCAVPGVDD V R G CP WC
Sbjct: 673 TPFDMGAGAINAARAVDPGLVFDAGYRDYLQFLCAVPGVDDAAVLRAVGVPCPPSRARWC 732
Query: 712 SDLNTPSITISNLVGSRKVIRRVRNVSSANETYTVTVKEPSGVKVSVSPQVFKIRGLASR 771
SDLN PS+T+++LVGSR+V RRV +V + NETY V+ P GV V VSP F + A+
Sbjct: 733 SDLNAPSVTVASLVGSRRVDRRVTSVGAENETYMAHVQAPDGVAVRVSPDTFAVAPGATA 792
Query: 772 ELKIVLKATNSTRAYSFGAMVLQGNNNHIIRIPIAVYVSTSL 813
L+IVL T +SFG +VL+G+ H +RIP+AV+ + +L
Sbjct: 793 TLRIVLNTTAPGNTFSFGEVVLRGDKKHTVRIPLAVFPAAAL 834
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|218195307|gb|EEC77734.1| hypothetical protein OsI_16841 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 859 bits (2219), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 448/826 (54%), Positives = 578/826 (69%), Gaps = 31/826 (3%)
Query: 1 MAFCTFILLFSFITIWDFLPLN-------AKVFIVLMDEEPVTSLKLERSYDRNETDAIV 53
MAFC L+F ++ FL LN AKVF+V+M+++P+ S K + +A
Sbjct: 73 MAFCKPCLVF--YSVLTFLILNGGPSHVLAKVFMVVMEDDPIISPKSSQKKVMRGEEAQK 130
Query: 54 YKERISGGHDRFLESLLHGHSYTKLYSYTHLLSGFAIHIESEEAVSTLQNAKGVRIIHED 113
YK + HD FL+S L SY KLYSYTHLL+GFAI+ +SE+A+ TL AKGVR+I ED
Sbjct: 131 YKAMTTTKHDIFLDSFLPAGSYKKLYSYTHLLNGFAIYAKSEKAIKTLSGAKGVRLIQED 190
Query: 114 IKMEKLTMHTPEFLGIPVGVWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQS 173
IKM K+T +TP ++G V VWP LGGAE +G+GVVIG +DTGI+P +PSF S S +
Sbjct: 191 IKMAKMTTYTPRYIGANV-VWPLLGGAEKAGDGVVIGMVDTGIDPSNPSFLSTSDQAKPP 249
Query: 174 ISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYASPFDADGHGSHTAS 233
+ FKG C TG RFP +CN KIVGA++FARA A G+FN+T YASP+D DGHGSHTAS
Sbjct: 250 PASFKGTCQTGERFPPDSCNGKIVGARWFARAGQATGEFNATMHYASPYDPDGHGSHTAS 309
Query: 234 TAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFGGYMADVVAAVDQAVEDGVDII 293
TAAGN P I G+N+G+ASG+APGA +A+YKA Y+FGGYM+DV+AAVD+AVEDGVDII
Sbjct: 310 TAAGNFHTPAISKGYNFGHASGVAPGAHLAIYKAAYSFGGYMSDVIAAVDKAVEDGVDII 369
Query: 294 SLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSSSILSFSPWITSIAA 353
SLS+GP+ + SGPA+FLN LE +LL ATKAG+ VVQA GN GP ++S++SFSPWITS+ A
Sbjct: 370 SLSLGPTTITSGPASFLNLLETQLLLATKAGISVVQAVGNGGPDANSVVSFSPWITSVGA 429
Query: 354 SITDRKYNNTIKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYP 413
S TDRKYN +I + NG FS GL+P T G YPLA A DVC+ N STG S +CQ P
Sbjct: 430 STTDRKYNKSIIIGNGKVFSCGGLSPSTPGETMYPLALADDVCNTN-STGGSS--NCQDP 486
Query: 414 ELFIPALVRGKLIICTY--SFDFENDDATIATVADNIKKIEAAGFIL----RMDPDQDFS 467
++FI +LV+GK+IIC + S +E D +A + D I+KI AAG I+ D D ++
Sbjct: 487 DVFIRSLVQGKVIICMFVSSNYYEGD--FLAGIVDTIQKIGAAGVIITDRSSSDSDIEYH 544
Query: 468 PNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHG 527
P +P I+ N + LLEYY+ + ++ + G F A RILDGRRAIY
Sbjct: 545 PT----FPTSIPSAIVVNSADAQALLEYYDDNLVRDKEGSVTKFGATIRILDGRRAIYTR 600
Query: 528 QAPVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLS 587
+APVVA YSSRGPDV++ +Q ADVLKPN+MAPG IW AWSP+S+ +G +A+LS
Sbjct: 601 EAPVVAEYSSRGPDVDDMQMQAADVLKPNVMAPGHHIWGAWSPTSDAMVEFQGEIYAMLS 660
Query: 588 GTSMATPHIAGVAALIKQRHPKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHV 647
GTSMATPH+AGV ALI+QRHPKWSPA + SA+MT+A+VTD SG P++A+ D +LE
Sbjct: 661 GTSMATPHVAGVVALIRQRHPKWSPAMVMSAIMTTADVTDRSGRPLMAR--RDGGVLE-- 716
Query: 648 LVHATPFDFGAGFINPARAIDPGLIFNAHFQEYVQFLCAVPGVDDDYVRRVTGYGCPTEN 707
ATPFD GAG IN ARA+DPGL+F+A +++Y+QFLCAVPGVDD V R G CP
Sbjct: 717 --RATPFDMGAGAINAARAVDPGLVFDAGYRDYLQFLCAVPGVDDAAVLRAVGVPCPPSR 774
Query: 708 QGWCSDLNTPSITISNLVGSRKVIRRVRNVSSANETYTVTVKEPSGVKVSVSPQVFKIRG 767
WCSDLN PS+T+++LVGSR+V RRV +V + NETY V+ P GV V VSP F +
Sbjct: 775 ARWCSDLNAPSVTVASLVGSRRVDRRVTSVGAENETYMAHVQAPDGVAVRVSPDTFAVAP 834
Query: 768 LASRELKIVLKATNSTRAYSFGAMVLQGNNNHIIRIPIAVYVSTSL 813
A+ L+IVL T +SFG +VL+G+ H +RIP+AV+ + +L
Sbjct: 835 GATATLRIVLNTTAPGNTFSFGEVVLRGDKKHTVRIPLAVFPAAAL 880
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|50845224|gb|AAT84609.1| meiotic serine protease [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 854 bits (2206), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 442/822 (53%), Positives = 571/822 (69%), Gaps = 23/822 (2%)
Query: 1 MAFCTFILLFSFITIWDFLPLN-------AKVFIVLMDEEPVTSLKLERSYDRNETDAIV 53
MAFC L+F ++ FL LN AKVF+V+M+++P+ S K + +A
Sbjct: 5 MAFCKPCLVF--YSVLTFLILNGGPSHVLAKVFMVVMEDDPIISPKSSQKKVMRGEEAQK 62
Query: 54 YKERISGGHDRFLESLLHGHSYTKLYSYTHLLSGFAIHIESEEAVSTLQNAKGVRIIHED 113
YK + HD FL+S L SY KLYSYTHLL+GFAI+ +SE+A+ TL AKGVR+I ED
Sbjct: 63 YKAMTTTKHDIFLDSFLPAGSYKKLYSYTHLLNGFAIYAKSEKAIKTLSGAKGVRLIQED 122
Query: 114 IKMEKLTMHTPEFLGIPVGVWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQS 173
IKM K+T +TP ++G V VWP LGGAE +G+GVVIG +DTGI+P +PSF S S +
Sbjct: 123 IKMAKMTTYTPRYIGANV-VWPLLGGAEKAGDGVVIGMVDTGIDPSNPSFLSTSDQAKPP 181
Query: 174 ISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYASPFDADGHGSHTAS 233
+ FKG C TG RFP +CN KIVGA++FARA A G+FN+T YASP+D DGHGSHTAS
Sbjct: 182 PASFKGTCQTGERFPPDSCNGKIVGARWFARAGQATGEFNATMHYASPYDPDGHGSHTAS 241
Query: 234 TAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFGGYMADVVAAVDQAVEDGVDII 293
TAAGN P I G+N+G+ASG+APGA +A+YKA Y+FGGYM+DV+AAVD+AVEDGVDII
Sbjct: 242 TAAGNFHTPAISKGYNFGHASGVAPGAHLAIYKAAYSFGGYMSDVIAAVDKAVEDGVDII 301
Query: 294 SLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSSSILSFSPWITSIAA 353
SLS+GP+ + SGPA+FLN LE +LL ATKAG+ VVQA GN GP ++S++SFSPWITS+ A
Sbjct: 302 SLSLGPTTITSGPASFLNLLETQLLLATKAGISVVQAVGNGGPDANSVVSFSPWITSVGA 361
Query: 354 SITDRKYNNTIKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYP 413
S TDRKYN +I + NG FS GL+P T G YPLA A DV + N + G +CQ P
Sbjct: 362 STTDRKYNKSIIIGNGKVFSCGGLSPSTPGETMYPLALADDVSNTNSTGG---SSNCQDP 418
Query: 414 ELFIPALVRGKLIICTY--SFDFENDDATIATVADNIKKIEAAGFILRMDPDQDFSPNKF 471
++FI +LV+GK+IIC + S +E D +A + D I+KI AAG I+ D
Sbjct: 419 DVFIRSLVQGKVIICMFVSSNYYEGD--FLAGIVDTIQKIGAAGVIITDRSSSDSDIEYH 476
Query: 472 KDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPV 531
+P I+ N + LLEYY+ + ++ + G F A RILDGRRAIY +APV
Sbjct: 477 PTFPTSIPSAIVVNSADAQALLEYYDDNLVRDKEGSVTKFGATIRILDGRRAIYTREAPV 536
Query: 532 VASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSM 591
VA YSSRGPDV++ +Q ADVLKPN+MAPG IW AWSP+S+ +G +A+LSGTSM
Sbjct: 537 VAEYSSRGPDVDDMQMQAADVLKPNVMAPGHHIWGAWSPTSDAMVEFQGEIYAMLSGTSM 596
Query: 592 ATPHIAGVAALIKQRHPKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHA 651
ATPH+AGV ALI+QRHPKWSPA + SA+MT+A+VTD SG P++A+ D +LE A
Sbjct: 597 ATPHVAGVVALIRQRHPKWSPAMVMSAIMTTADVTDRSGRPLMAR--RDGGVLE----RA 650
Query: 652 TPFDFGAGFINPARAIDPGLIFNAHFQEYVQFLCAVPGVDDDYVRRVTGYGCPTENQGWC 711
TPFD GAG IN ARA+DPGL+F+A +++Y+QFLCAVPGVDD V R G CP WC
Sbjct: 651 TPFDMGAGAINAARAVDPGLVFDAGYRDYLQFLCAVPGVDDAAVLRAVGVPCPPSRARWC 710
Query: 712 SDLNTPSITISNLVGSRKVIRRVRNVSSANETYTVTVKEPSGVKVSVSPQVFKIRGLASR 771
SDLN PS+T+++LVGSR+V RRV +V + NETY V+ P GV V VSP F + A+
Sbjct: 711 SDLNAPSVTVASLVGSRRVDRRVTSVGAENETYMAHVQAPDGVAVRVSPDTFAVAPGATA 770
Query: 772 ELKIVLKATNSTRAYSFGAMVLQGNNNHIIRIPIAVYVSTSL 813
L+IVL T +SFG +VL+G+ H +RIP+AV+ + +L
Sbjct: 771 TLRIVLNTTAPGNTFSFGEVVLRGDKKHTVRIPLAVFPAAAL 812
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 813 | ||||||
| UNIPROTKB|Q0JBB7 | 815 | Os04g0543700 "Os04g0543700 pro | 0.984 | 0.981 | 0.512 | 8.7e-214 | |
| TAIR|locus:2059052 | 815 | SLP3 "AT2G19170" [Arabidopsis | 0.966 | 0.964 | 0.435 | 1.8e-174 | |
| UNIPROTKB|Q5Z852 | 820 | P0468G03.18 "Putative meiotic | 0.953 | 0.945 | 0.437 | 3.3e-173 | |
| TAIR|locus:2126485 | 816 | AT4G30020 "AT4G30020" [Arabido | 0.958 | 0.954 | 0.439 | 1.3e-171 | |
| TAIR|locus:2163446 | 840 | AT5G44530 "AT5G44530" [Arabido | 0.907 | 0.878 | 0.437 | 1.8e-156 | |
| TAIR|locus:2128595 | 856 | AT4G20430 "AT4G20430" [Arabido | 0.917 | 0.871 | 0.424 | 1.8e-151 | |
| UNIPROTKB|Q94EF5 | 849 | P0665A11.6 "Uncharacterized pr | 0.900 | 0.862 | 0.427 | 5.4e-150 | |
| TAIR|locus:2027139 | 832 | ALE1 "AT1G62340" [Arabidopsis | 0.954 | 0.932 | 0.407 | 7.9e-149 | |
| TAIR|locus:2204619 | 832 | AT1G30600 "AT1G30600" [Arabido | 0.956 | 0.935 | 0.399 | 2.7e-148 | |
| TAIR|locus:2091010 | 775 | AT3G14240 "AT3G14240" [Arabido | 0.414 | 0.434 | 0.334 | 3.5e-77 |
| UNIPROTKB|Q0JBB7 Os04g0543700 "Os04g0543700 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 2066 (732.3 bits), Expect = 8.7e-214, P = 8.7e-214
Identities = 421/821 (51%), Positives = 544/821 (66%)
Query: 1 MAFCTFILLFSFITIWDFLPLN-------AKVFIVLMDEEPVTSLKLERSYDRNETDAIV 53
MAFC L+F ++ FL LN AKVF+V+M+++P+ S K + +A
Sbjct: 6 MAFCKPCLVF--YSVLTFLILNGGPSHVLAKVFMVVMEDDPIISPKSSQKKVMRGEEAQK 63
Query: 54 YKERISGGHDRFLESLLHGHSYTKLYSYTHLLSGFAIHIESEEAVSTLQNAKGVRIIHED 113
YK + HD FL+S L SY KLYSYTHLL+GFAI+ +SE+A+ TL AKGVR+I ED
Sbjct: 64 YKAMTTTKHDIFLDSFLPAGSYKKLYSYTHLLNGFAIYAKSEKAIKTLSGAKGVRLIQED 123
Query: 114 IKMEKLTMHTPEFLGIPVGVWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQS 173
IKM K+T +TP ++G V VWP LGGAE +G+GVVIG +DTGI+P +PSF S S +
Sbjct: 124 IKMAKMTTYTPRYIGANV-VWPLLGGAEKAGDGVVIGMVDTGIDPSNPSFLSTSDQAKPP 182
Query: 174 ISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYASPFDADGHGSHTAS 233
+ FKG C TG RFP +CN KIVGA++FARA A G+FN+T YASP+D DGHGSHTAS
Sbjct: 183 PASFKGTCQTGERFPPDSCNGKIVGARWFARAGQATGEFNATMHYASPYDPDGHGSHTAS 242
Query: 234 TAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFGGYMXXXXXXXXXXXXXXXXII 293
TAAGN P I G+N+G+ASG+APGA +A+YKA Y+FGGYM II
Sbjct: 243 TAAGNFHTPAISKGYNFGHASGVAPGAHLAIYKAAYSFGGYMSDVIAAVDKAVEDGVDII 302
Query: 294 SLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNXXXXXXXXXXXXXXXXXIAA 353
SLS+GP+ + SGPA+FLN LE +LL ATKAG+ VVQA GN + A
Sbjct: 303 SLSLGPTTITSGPASFLNLLETQLLLATKAGISVVQAVGNGGPDANSVVSFSPWITSVGA 362
Query: 354 SITDRKYNNTIKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYP 413
S TDRKYN +I + NG FS GL+P T G YPLA A DVC+ N STG S +CQ P
Sbjct: 363 STTDRKYNKSIIIGNGQVFSCGGLSPSTPGETMYPLALADDVCNTN-STGGSS--NCQDP 419
Query: 414 ELFIPALVRGKLIICTY-SFDFENDDATIATVADNIKKIEAAGFILRMDPDQDFSPNKFK 472
++FI +LV+GK+IIC + S ++ D +A + D I+KI AAG I+ D
Sbjct: 420 DVFIRSLVQGKVIICMFVSSNYYEGDF-LAGIVDTIQKIGAAGVIITDRSSSDSDIEYHP 478
Query: 473 DMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPVV 532
+P I+ N + LLEYY+ + ++ + G F A RILDGRRAIY +APVV
Sbjct: 479 TFPTSIPSAIVVNSADAQALLEYYDDNLVRDKEGSVTKFGATIRILDGRRAIYTREAPVV 538
Query: 533 ASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMA 592
A YSSRGPDV++ +Q ADVLKPN+MAPG IW AWSP+S+ +G ++A+LSGTSMA
Sbjct: 539 AEYSSRGPDVDDMQMQAADVLKPNVMAPGHHIWGAWSPTSDAMVEFQGESYAMLSGTSMA 598
Query: 593 TPHIAGVAALIKQRHPKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHAT 652
TPH+AGV ALI+QRHPKWSPA + SA+MT+A+VTD SG P++A+ D +LE AT
Sbjct: 599 TPHVAGVVALIRQRHPKWSPAMVMSAIMTTADVTDRSGRPLMAR--RDGGVLER----AT 652
Query: 653 PFDFGAGFINPARAIDPGLIFNAHFQEYVQFLCAVPGVDDDYVRRVTGYGCPTENQGWCS 712
PFD GAG IN ARA+DPGL+F+A +++Y+QFLCAVPGVDD V R G CP WCS
Sbjct: 653 PFDMGAGAINAARAVDPGLVFDAGYRDYLQFLCAVPGVDDAAVLRAVGVPCPPSRARWCS 712
Query: 713 DLNTPSITISNLVGSRKVIRRVRNVSSANETYTVTVKEPSGVKVSVSPQVFKIRGLASRE 772
DLN PS+T+++LVGSR+V RRV +V + NETY V+ P GV V VSP F + A+
Sbjct: 713 DLNAPSVTVASLVGSRRVDRRVTSVGAENETYMAHVQAPDGVAVRVSPDTFAVAPGATAT 772
Query: 773 LKIVLKATNSTRAYSFGAMVLQGNNNHIIRIPIAVYVSTSL 813
L+IVL T +SFG +VL+G+ H +RIP+AV+ + +L
Sbjct: 773 LRIVLNTTAPGNTFSFGEVVLRGDKKHTVRIPLAVFPAAAL 813
|
|
| TAIR|locus:2059052 SLP3 "AT2G19170" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1695 (601.7 bits), Expect = 1.8e-174, P = 1.8e-174
Identities = 352/809 (43%), Positives = 489/809 (60%)
Query: 12 FITIWDFLPLNAKVFIVLMDEEPVTSLKL-ERSYDRN--ETD---------AIVYKERIS 59
F+ + + A+V+IV M+ +P+ S K E ++ E+D VY +
Sbjct: 8 FVVFVLLVAVTAEVYIVTMEGDPIISYKGGENGFEATAVESDEKIDTSSELVTVYARHLE 67
Query: 60 GGHDRFLESLLHGHSYTKLYSYTHLLSGFAIHIESEEAVSTLQNAKGVRIIHEDIKMEKL 119
HD L L SY KLYSY HL++GFA H+ E+A TL+ A GVR + +D K+ +L
Sbjct: 68 RKHDMILGMLFEEGSYKKLYSYKHLINGFAAHVSPEQA-ETLRRAPGVRSVDKDWKVRRL 126
Query: 120 TMHTPEFLGIPVGVWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKG 179
T HTPEFLG+P VWPT GG + +GE +VIGF+D+GI P HPSFASH + +KG
Sbjct: 127 TTHTPEFLGLPTDVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFASHHRLPYGPLPHYKG 186
Query: 180 KCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNH 239
KC + CN KIVGAQ+FA AA A G FN DYASP D DGHGSHTA+ AAGN+
Sbjct: 187 KCEEDPHTKKSFCNRKIVGAQHFAEAAKAAGAFNPDIDYASPMDGDGHGSHTAAIAAGNN 246
Query: 240 RVPVIVSGFNYGYASGMAPGARIAVYKALYT-FGGYMXXXXXXXXXXXXXXXXIISLSVG 298
+P+ + G+ +G ASGMAP ARIAVYKALY FGG++ I+SLSVG
Sbjct: 247 GIPLRMHGYEFGKASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDILSLSVG 306
Query: 299 PSAVPSGP-AAFLNALEMELLFATKAGVLVVQAAGNXXXXXXXXXXXXXXXXXIAASITD 357
P++ P+ FLN + LL A KAGV V QAAGN +AA+I D
Sbjct: 307 PNSPPTTTKTTFLNPFDATLLGAVKAGVFVAQAAGNGGPFPKTLVSYSPWITTVAAAIDD 366
Query: 358 RKYNNTIKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFI 417
R+Y N + L NG +G+GL+PPT Y L +A DV + S ++ CQ PE+F
Sbjct: 367 RRYKNHLTLGNGKMLAGMGLSPPTRPHRLYTLVSANDVL-LDSSVSKYNPSDCQRPEVFN 425
Query: 418 PALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPDQDFSPN-KFKDMAL 476
LV G +++C YSF+F A+I V K + AAGF+L ++ + SP KF +
Sbjct: 426 KKLVEGNILLCGYSFNFVVGTASIKKVVATAKHLGAAGFVLVVE---NVSPGTKFDPVPS 482
Query: 477 DVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPVVASYS 536
+PGI++ ++ SMDL++YYN+ T + G+ F A I DG + H AP VA +S
Sbjct: 483 AIPGILITDVSKSMDLIDYYNASTSRDWTGRVKSFKAEGSIGDGLAPVLHKSAPQVALFS 542
Query: 537 SRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHI 596
+RGP+ + Q AD+LKP+I+APG IWAAW P+ +PN G FAL+SGTSMA PHI
Sbjct: 543 ARGPNTKDFSFQDADLLKPDILAPGYLIWAAWCPNGTDEPNYVGEGFALISGTSMAAPHI 602
Query: 597 AGVAALIKQRHPKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDF 656
AG+AAL+KQ+HP+WSPAAI SA+MT++ V D +G + AQ YSD+ + LV ATPFD+
Sbjct: 603 AGIAALVKQKHPQWSPAAIKSALMTTSTVIDRAGRLLQAQQYSDTEAV--TLVKATPFDY 660
Query: 657 GAGFINPARAIDPGLIFNAHFQEYVQFLCAVPGVDDDYVRRVTGYGCPTENQGWCSDLNT 716
G+G +NP+ A+DPGLIF+A +++Y+ FLC PG+ +R T C + + S+ N
Sbjct: 661 GSGHVNPSAALDPGLIFDAGYEDYLGFLCTTPGISAHEIRNYTNTACNYDMKH-PSNFNA 719
Query: 717 PSITISNLVGSRKVIRRVRNVSSANETYTVTVKEPSGVKVSVSPQVFKIRGLASRELKIV 776
PSI +S+LVG++ V R+V NV+ ETYT+T + + + V+P +R A+R +
Sbjct: 720 PSIAVSHLVGTQTVTRKVTNVAEVEETYTITARMQPSIAIEVNPPAMTLRPGATRTFSVT 779
Query: 777 LKATNSTRAYSFGAMVLQGNNNHIIRIPI 805
+ + + YSFG + L+G+ H +RIP+
Sbjct: 780 MTVRSVSGVYSFGEVKLKGSRGHKVRIPV 808
|
|
| UNIPROTKB|Q5Z852 P0468G03.18 "Putative meiotic serine proteinase" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1683 (597.5 bits), Expect = 3.3e-173, P = 3.3e-173
Identities = 349/797 (43%), Positives = 495/797 (62%)
Query: 25 VFIVLMDEEPVTSLK--LE----RSYDRNE-----TDAIV-YKERISGGHDRFLESLLHG 72
V+IV M+ EPV S + +E + D +E ++A+ Y + HD+ L+SLL
Sbjct: 24 VYIVTMEGEPVVSYRGGVEGFPATAIDLDEDMEITSEAVTSYSLHLRRYHDKLLDSLLVE 83
Query: 73 HSYTKLYSYTHLLSGFAIHIESEEAVSTLQNAKGVRIIHEDIKMEKLTMHTPEFLGIPVG 132
+Y KLYSY HL++GFA+H+ +A L+ A GV+ + D+K++KLT HTP+FLG+P G
Sbjct: 84 GTYEKLYSYHHLINGFAVHMSPLQA-EFLRKAPGVKHVERDMKIQKLTTHTPQFLGLPTG 142
Query: 133 VWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTAC 192
VWPT GG + +GE VVIGF+D+GI P+HPSF++H + +KGKC + C
Sbjct: 143 VWPTGGGFDRAGEDVVIGFVDSGIYPQHPSFSAHKTDPYGPVPHYKGKCEMDPVTRRSFC 202
Query: 193 NSKIVGAQYFARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGY 252
N KIVGAQ+FA+AAIA G FN D+ASP D DGHGSHTA+ AAGN+ +PV + G +G
Sbjct: 203 NGKIVGAQHFAKAAIAAGAFNPDVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGK 262
Query: 253 ASGMAPGARIAVYKALYT-FGGYMXXXXXXXXXXXXXXXXIISLSVGPSAVPSGP-AAFL 310
ASGMAP ARIAVYK LY FGGY+ I++LSVGP++ P+ FL
Sbjct: 263 ASGMAPRARIAVYKVLYRLFGGYVSDVVAAIDQAVQDGVDILNLSVGPNSPPTATRTTFL 322
Query: 311 NALEMELLFATKAGVLVVQAAGNXXXXXXXXXXXXXXXXXIAASITDRKYNNTIKLANGH 370
N + LL A KAGV V QAAGN +AA + DR+Y N + L NG
Sbjct: 323 NPFDAALLSAVKAGVFVAQAAGNGGPFPKTLVSFSPWITTVAAGVDDRRYKNHLVLGNGK 382
Query: 371 SFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTY 430
G+G++P T + L +AAD + +T +L+ CQ PEL ++GK+++C Y
Sbjct: 383 LLPGLGVSPATHENKSFSLISAADALLGSSATKYSALD-CQRPELLNKRKIQGKILLCGY 441
Query: 431 SFDFENDDATIATVADNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSM 490
SF++ + A+I V++ + + AAGFI+ ++ + KF + + +PGI++ ++ +
Sbjct: 442 SFNYISGTASIKKVSETARSLGAAGFIVAVE--NSYPGTKFDPVPVSMPGILITDVSRTK 499
Query: 491 DLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPVVASYSSRGPDVNNALLQTA 550
DL++YYNS TI+ AG+A F A A I DG + AP VA +SSRGPDV + Q A
Sbjct: 500 DLIDYYNSSTIRDWAGRATTFQATAAIADGLAPTLYNSAPQVALFSSRGPDVKDFSFQDA 559
Query: 551 DVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKW 610
DVLKP+I+APG+ IWAAW+P+ + N G FA++SGTSMA PHIAG+AALIKQ++PKW
Sbjct: 560 DVLKPDILAPGNLIWAAWAPNGTDEANYAGEGFAMVSGTSMAAPHIAGIAALIKQKNPKW 619
Query: 611 SPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGFINPARAIDPG 670
SP+AI SA+MT++ D P+ AQ YS S I+ L ATPFD+G+G +NP A+DPG
Sbjct: 620 SPSAIKSALMTTSNTLDKGSHPLRAQQYSTSEIM--TLTRATPFDYGSGAVNPKAALDPG 677
Query: 671 LIFNAHFQEYVQFLCAVPGVDDDYVRRVTGYGCPTEN--QGWCSDLNTPSITISNLVGSR 728
L+ +A Q+Y+ FLC++P V+ V +TG C + + Q DLN PSITIS L G++
Sbjct: 678 LVLDATHQDYITFLCSIPDVEHSEVSNITGSTCSSSSKVQQRPYDLNIPSITISQLRGTQ 737
Query: 729 KVIRRVRNVSSANETYTVTVKEPSGVKVSVSPQVFKIRGLASRELKIVLKATNSTRAYSF 788
V R V +V++ ETYT+ + + + VSP + ASRE+ L A + T YSF
Sbjct: 738 TVKRTVTSVAAEAETYTIMTRMSPEIALEVSPPALTVLPGASREITATLTARSVTGTYSF 797
Query: 789 GAMVLQGNNNHIIRIPI 805
G + ++G+ H++RIP+
Sbjct: 798 GEITMKGDRGHLVRIPV 814
|
|
| TAIR|locus:2126485 AT4G30020 "AT4G30020" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1668 (592.2 bits), Expect = 1.3e-171, P = 1.3e-171
Identities = 354/805 (43%), Positives = 486/805 (60%)
Query: 18 FLPLNAKVFIVLMDEEPVTSLK----------LERSYDRNETDAIV--YKERISGGHDRF 65
FL + A+++IV M+ EP+ S K +E + T +V Y + HD
Sbjct: 14 FLTVTAEIYIVTMEGEPIISYKGGDNGFEATAVESDEKIDTTSELVTSYARHLERKHDML 73
Query: 66 LESLLHGHSYTKLYSYTHLLSGFAIHIESEEAVSTLQNAKGVRIIHEDIKMEKLTMHTPE 125
L L SY KLYSY HL++GFA H+ ++A L+ A GV+ + D K+ KLT HTP+
Sbjct: 74 LGMLFVEGSYKKLYSYKHLINGFAAHVSPDQA-EMLRRAPGVKSVDRDWKVRKLTTHTPQ 132
Query: 126 FLGIPVGVWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSIS-KFKGKCTTG 184
FLG+P VWPT GG + +GE +VIGFID+GI P HPSFASH +KGKC
Sbjct: 133 FLGLPTDVWPTGGGYDRAGEDIVIGFIDSGIFPHHPSFASHHTTVPYGPHPSYKGKCEED 192
Query: 185 NRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVI 244
+ CN KI+GAQ+FA AA A G FN D+ASP D DGHGSHTA+ AAGN+ +PV
Sbjct: 193 PHTKISFCNGKIIGAQHFAEAAKAAGAFNPDIDFASPMDGDGHGSHTAAIAAGNNGIPVR 252
Query: 245 VSGFNYGYASGMAPGARIAVYKALYT-FGGYMXXXXXXXXXXXXXXXXIISLSVGPSAVP 303
+ G+ +G ASGMAP ARIAVYKALY FGG++ I+SLSVGP++ P
Sbjct: 253 MHGYEFGKASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDILSLSVGPNSPP 312
Query: 304 SGP-AAFLNALEMELLFATKAGVLVVQAAGNXXXXXXXXXXXXXXXXXIAASITDRKYNN 362
+ FLN + LL A KAGV V QAAGN +AA+I DR+Y N
Sbjct: 313 ATTKTTFLNPFDATLLGAVKAGVFVAQAAGNGGPFPKTLVSYSPWITTVAAAIDDRRYKN 372
Query: 363 TIKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGI-FSLESCQYPELFIPALV 421
+ L NG +GIGL+P T Y + +A DV S+G+ ++ CQ PE+ LV
Sbjct: 373 HLTLGNGKMLAGIGLSPSTRPHRSYKMVSANDVLLG--SSGMKYNPSDCQKPEVLNKKLV 430
Query: 422 RGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPDQDFSPN-KFKDMALDVPG 480
G +++C YSF+F A+I VA+ K + AAGF+L ++ + SP KF + +PG
Sbjct: 431 EGNILLCGYSFNFVAGSASIKKVAETAKHLGAAGFVLVVE---NVSPGTKFDPVPSCIPG 487
Query: 481 IILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPVVASYSSRGP 540
I++ ++ SMDL++YYN T + G+ F A I DG I H AP VA +S+RGP
Sbjct: 488 ILITDVSKSMDLIDYYNVTTSRDWMGRVKDFKAEGSIGDGLEPILHKSAPEVALFSARGP 547
Query: 541 DVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVA 600
+ + Q AD+LKP+I+APGS IW+AWS + + N G FAL+SGTSMA PHIAG+A
Sbjct: 548 NTKDFSFQDADLLKPDILAPGSLIWSAWSANGTDEANYIGEGFALISGTSMAAPHIAGIA 607
Query: 601 ALIKQRHPKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGF 660
AL+KQ+HP+WSPAAI SA+MT++ V D +G P+ AQ YS++ + LV ATPFD+G+G
Sbjct: 608 ALVKQKHPQWSPAAIKSALMTTSTVIDRAGRPLQAQQYSETETV--TLVKATPFDYGSGH 665
Query: 661 INPARAIDPGLIFNAHFQEYVQFLCAVPGVDDDYVRRVTGYGCPTENQGWCSDLNTPSIT 720
+NP+ A+DPGLIF+A +++Y+ FLC PG+D ++ T C + S+ NTPSI
Sbjct: 666 VNPSAALDPGLIFDAGYEDYIGFLCTTPGIDAHEIKNFTNTPCNFK-MVHPSNFNTPSIA 724
Query: 721 ISNLVGSRKVIRRVRNVSSANETYTVTVKEPSGVKVSVSPQVFKIRGLASRELKIVLKAT 780
IS+LV ++ V RRV NV+ ETYT+T + + + VSP +R ASR + L
Sbjct: 725 ISHLVRTQTVTRRVTNVAEEEETYTITSRMEPAIAIEVSPPAMTVRAGASRTFSVTLTVR 784
Query: 781 NSTRAYSFGAMVLQGNNNHIIRIPI 805
+ T AYSFG + L+G+ H + +P+
Sbjct: 785 SVTGAYSFGQVTLKGSRGHKVTLPV 809
|
|
| TAIR|locus:2163446 AT5G44530 "AT5G44530" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1525 (541.9 bits), Expect = 1.8e-156, P = 1.8e-156
Identities = 329/752 (43%), Positives = 444/752 (59%)
Query: 62 HDRFLESLLHGHSYTKLYSYTHLLSGFAIHIESEEAVSTLQNAKGVRIIHEDIKMEKLTM 121
HD FL L G Y KLYSY +L++GFA+ I S++A L K V I D + T
Sbjct: 90 HDSFLRKTLKGEKYIKLYSYHYLINGFALFINSQQA-EKLSMRKEVANIVLDYSVRTATT 148
Query: 122 HTPEFLGIPVGVWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISK-FKGK 180
+TP+F+G+P G W GG E +GEGV+IGFIDTGI+P HPSF + + + I K F G
Sbjct: 149 YTPQFMGLPQGAWVKEGGFEIAGEGVIIGFIDTGIDPNHPSFNDNDSKRSYPIPKHFSGV 208
Query: 181 CTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHR 240
C FPS +CN K++GA++FA++A+ G FNS+ DYASPFD DGHG+HTAS AAGNH
Sbjct: 209 CEVTPDFPSGSCNKKLIGARHFAQSAVTRGIFNSSEDYASPFDGDGHGTHTASVAAGNHG 268
Query: 241 VPVIVSGFNYGYASGMAPGARIAVYKALY-TFGGYMXXXXXXXXXXXXXXXXIISLSVGP 299
VPVIVS N+GYASG+AP A I+VYKALY +FGG+ I+SLS+ P
Sbjct: 269 VPVIVSNHNFGYASGIAPRAFISVYKALYKSFGGFAADVVAAIDQAAQDGVDILSLSITP 328
Query: 300 SAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNXXXXXXXXXXXXXXXXXIAASITDRK 359
+ P G A F N ++M LL A KAG+ VVQAAGN + AS DR
Sbjct: 329 NRKPPGVATFFNPIDMALLSAVKAGIFVVQAAGNTGPAPKTMSSFSPWIFTVGASSHDRV 388
Query: 360 YNNTIKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGI-FSLESCQYPELFIP 418
Y+N++ L N + G+G A PT Y + +A + + S + CQ E F
Sbjct: 389 YSNSLTLGNNVTIPGMGFAIPTDSGKMYKMISAFHALNNSTSVDKDMYVGECQDYENFDQ 448
Query: 419 ALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPDQ-DFSPNKFKDMALD 477
V GKL+IC+YS F +TI D K + A G I +DP F N +D
Sbjct: 449 DRVSGKLLICSYSARFVLGLSTIKQALDVAKNLSATGVIFYIDPYVLGFEINP---TPMD 505
Query: 478 VPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVV-FHARARILDGRRAIYHGQAPVVASYS 536
+PGII+ +++ S LL+YYNS + + +V F A A I G A + +AP V YS
Sbjct: 506 MPGIIIPSVEDSKTLLKYYNSSIQRDVTTKEIVSFGAVAAIEGGLNANFSNRAPKVMYYS 565
Query: 537 SRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHI 596
+RGPD + ADVLKPN++APG+SIW AWS +S +G FA++SGTSMA PH+
Sbjct: 566 ARGPDPEDNSFNDADVLKPNLVAPGNSIWGAWSSASTDSTEFEGEKFAMMSGTSMAAPHV 625
Query: 597 AGVAALIKQRHPKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDF 656
AGVAALIKQ +P+++P+ I+SA+ T+A + D+ GSPI+AQ +P + L ATP D
Sbjct: 626 AGVAALIKQSYPQFTPSTISSALSTTALLNDNKGSPIMAQRTYSNP--DQSLYTATPSDM 683
Query: 657 GAGFINPARAIDPGLIFNAHFQEYVQFLCAVPGVDDDYVRRVTGYGCPTENQGWCS-DLN 715
G+GF+N A+DPGL+F+ F++Y+ FLC + G D V TG+ CP N DLN
Sbjct: 684 GSGFVNATAALDPGLVFDTSFEDYISFLCGING-SDTVVFNYTGFRCPANNTPVSGFDLN 742
Query: 716 TPSITISNLVGSRKVIRRVRNVSSANETYTVTVKEPSGVKVSVSPQVFKIRGLASRELKI 775
PSIT+S L G++ R +RN++ NETY V P GV + VSP F I ++ L +
Sbjct: 743 LPSITVSTLSGTQTFQRSMRNIAG-NETYNVGWSPPYGVSMKVSPTQFSIAMGENQVLSV 801
Query: 776 VLKATNSTRAYSFGAMVLQGNNNHIIRIPIAV 807
L T ++ + SFG + L GN HI+ IP+ V
Sbjct: 802 TLTVTKNSSSSSFGRIGLFGNTGHIVNIPVTV 833
|
|
| TAIR|locus:2128595 AT4G20430 "AT4G20430" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1478 (525.3 bits), Expect = 1.8e-151, P = 1.8e-151
Identities = 324/764 (42%), Positives = 450/764 (58%)
Query: 55 KERISGGHDRFLESLLHGHSYTKLYSYTHLLSGFAIHIESEEAVSTLQNAKGVRIIHEDI 114
+ I+ HD L + L G Y KLYS+ +L++GFA+ + S++A TL + V I D
Sbjct: 96 RSAIAQAHDSLLRNALKGEKYIKLYSFHYLINGFAVFVSSQQA-ETLSRRREVANIVLDF 154
Query: 115 KMEKLTMHTPEFLGIPVGVWPTLGGAEFSGEGVVIGFIDTGINPEHPSF--ASHSFRGNQ 172
+ T +TP+F+G+P G W GG E +GEG+VIGFIDTGI+P HPSF S R
Sbjct: 155 SVRTATTYTPQFMGLPKGAWVKEGGYETAGEGIVIGFIDTGIDPTHPSFNGTDTSQRQYP 214
Query: 173 SISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYASPFDADGHGSHTA 232
+ F G C FPS +CN K+VGA++FA++AI G FNS+ DYASPFD DGHG+HTA
Sbjct: 215 IPNHFSGVCEVTPDFPSGSCNRKLVGARHFAQSAITRGIFNSSEDYASPFDGDGHGTHTA 274
Query: 233 STAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALY-TFGGYMXXXXXXXXXXXXXXXX 291
S AAGNH V +VSG N+G ASG+AP A I+VYKALY +FGG+
Sbjct: 275 SIAAGNHGVSAVVSGHNFGSASGIAPRAHISVYKALYKSFGGFAADVVAAIDQAAQDGVD 334
Query: 292 IISLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNXXXXXXXXXXXXXXXXXI 351
I+SLS+ P+ P G A F N L+M +L A KAG+ VVQAAGN +
Sbjct: 335 ILSLSITPNRRPPGVATFFNPLDMAMLSAVKAGIFVVQAAGNTGPSPKSMSSFSPWIFTV 394
Query: 352 AASITDRKYNNTIKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGI---FSLE 408
A+ DR Y+N+I L N S G+GLA T Y + +A D +N S+ + +
Sbjct: 395 GAASHDRDYSNSIVLGNNVSIPGVGLALRTDEGKKYTMISALDAL-KNKSSVVDKDMYVG 453
Query: 409 SCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPDQ-DFS 467
CQ F ++RG L+IC+YS F +TI K + A G + MDP F
Sbjct: 454 ECQDYGSFDKDVIRGNLLICSYSIRFVLGLSTIKQALAVAKNLSAKGVVFYMDPYVLGFQ 513
Query: 468 PNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVV-FHARARILDGRRAIYH 526
N +D+PGII+ + + S LL+YYNS ++ + +V F A A I G+ A +
Sbjct: 514 INP---TPMDMPGIIIPSAEDSKVLLKYYNSSLVRDGTTKEIVRFGAVAAIAGGQNANFS 570
Query: 527 GQAPVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALL 586
+AP + YS+RGPD ++L AD+LKPN++APG+SIW AWS ++ +G +FA++
Sbjct: 571 NRAPKIMYYSARGPDPQDSLFNDADILKPNLVAPGNSIWGAWSSAATESTEFEGESFAMM 630
Query: 587 SGTSMATPHIAGVAALIKQRHPKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEH 646
SGTSMA PH+AGVAAL+KQ+ K+SP+AI SA+ T++ + D+ G I+AQ +P +
Sbjct: 631 SGTSMAAPHVAGVAALVKQKFRKFSPSAIASALSTTSVLFDNKGEAIMAQRAYANP--DQ 688
Query: 647 VLVHATPFDFGAGFINPARAIDPGLIFNAHFQEYVQFLCAVPGVDDDYVRRVTGYGCPTE 706
+ ATPFD G GF+N A+DPGLIF+ F++Y+ FLC + G V TG C
Sbjct: 689 TISPATPFDMGNGFVNATAALDPGLIFDTSFEDYMSFLCGING-SAPVVFNYTGTNCLRN 747
Query: 707 NQGWC-SDLNTPSITISNLVGSRKVIRRVRNVSSANETYTVTVKEPSGVKVSVSPQVFKI 765
N SDLN PSIT+S L +R V R + N++ NETYTV++ P V ++VSP F I
Sbjct: 748 NATISGSDLNLPSITVSKLNNTRTVQRLMTNIAG-NETYTVSLITPFDVLINVSPTQFSI 806
Query: 766 RGLASRELKIVLKATNSTRAYSFGAMVLQGNNNHIIRIPIAVYV 809
++ L ++L A ++ SFG + L GN HI+RIP++V V
Sbjct: 807 ASGETKLLSVILTAKRNSSISSFGGIKLLGNAGHIVRIPVSVTV 850
|
|
| UNIPROTKB|Q94EF5 P0665A11.6 "Uncharacterized protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1464 (520.4 bits), Expect = 5.4e-150, P = 5.4e-150
Identities = 320/748 (42%), Positives = 435/748 (58%)
Query: 66 LESLLHGHSYTKLYSYTHLLSGFAIHIESEEAVSTLQNAKGVRIIHEDIKMEKLTMHTPE 125
L+ L G Y KLYSY +L++GFA+ I ++A L K V + D + T HTPE
Sbjct: 104 LKRTLRGERYIKLYSYRYLINGFAVVITPQQA-ERLSMTKEVANVMLDFSVRTATTHTPE 162
Query: 126 FLGIPVGVWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSI-SKFKGKCTTG 184
FLG+P G W GG + +G+GVV+G IDTGI+P HPSFA + + + + G C
Sbjct: 163 FLGLPQGAWVQEGGPQCAGQGVVVGLIDTGIDPTHPSFADDLITDSYPVPAHYSGICEVT 222
Query: 185 NRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVI 244
N FPS +CN K+VGA++FA +AI G FN+++D+ASP D+DGHG+HTAS AAGNH +PV+
Sbjct: 223 NDFPSGSCNRKLVGARHFAASAITRGVFNASQDHASPSDSDGHGTHTASIAAGNHGIPVV 282
Query: 245 VSGFNYGYASGMAPGARIAVYKALY-TFGGYMXXXXXXXXXXXXXXXXIISLSVGPSAVP 303
V+G ++G ASGMAP A IAVYKALY +FGG+ IISLS+ P+ P
Sbjct: 283 VAGHHFGNASGMAPRAHIAVYKALYKSFGGFAADVVAAIDQAAEDNVDIISLSITPNRRP 342
Query: 304 SGPAAFLNALEMELLFATKAGVLVVQAAGNXXXXXXXXXXXXXXXXXIAASITDRKYNNT 363
G A F N ++M LL A KAG+ VVQAAGN + AS DR+YNN
Sbjct: 343 PGLATFFNPIDMALLSAVKAGIFVVQAAGNTGPSPKSMSSYSPWIFTVGASAHDREYNNY 402
Query: 364 IKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGI-FSLESCQYPELFIPALVR 422
+ L N + +G+GLAP T G + L AA NV++ SL CQ L+R
Sbjct: 403 VVLGNNLTITGVGLAPGTDGDSMFTLVAAPHALKNNVASPTEMSLGECQDSSHLDEDLIR 462
Query: 423 GKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPDQ-DFSPNKFKDMALDVPGI 481
GK+++C+YS F +++ D K + AAG I +DP F N +D+PG+
Sbjct: 463 GKILVCSYSIRFVLGLSSVKQALDTAKNVSAAGVIFYLDPFVIGFQLNP---TPMDMPGL 519
Query: 482 ILNNMQSSMDLLEYYNSHTIKSRAGQAVV-FHARARILDGRRAIYHGQAPVVASYSSRGP 540
I+ + S L YYN ++ +V F A A+IL G+ Y AP V YS+RGP
Sbjct: 520 IIPSSDDSKVFLNYYNESLVRDETSNKIVSFGAIAKILGGQNPNYGISAPKVMFYSARGP 579
Query: 541 DVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVA 600
D + L AD+LKPN++APGSSIW AWS G +FA++SGTSMA PH+AG+A
Sbjct: 580 DPEDNSLANADILKPNLIAPGSSIWGAWSSLGLDSAEFAGESFAIISGTSMAAPHVAGLA 639
Query: 601 ALIKQRHPKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGF 660
AL+KQ+ P +SPAAI SA+ T+ ++D G+PI+AQ +P ATPFD G GF
Sbjct: 640 ALVKQKFPYFSPAAIGSALSTTTSLSDREGNPIMAQRTYGNP--NSTQSPATPFDMGNGF 697
Query: 661 INPARAIDPGLIFNAHFQEYVQFLCAVPGVDDDYVRRVTGYGCPTENQGWCSDLNTPSIT 720
+N A+DPGLIF++ + ++ FLC + G V TG C + +DLN PSIT
Sbjct: 698 VNATAALDPGLIFDSSYDDFFSFLCGING-SAPVVMNYTGNSCSSSAMTG-ADLNLPSIT 755
Query: 721 ISNLVGSRKVIRRVRNVSSANETYTVTVKEPSGVKVSVSPQVFKIRGLASRELKIVLKAT 780
I+ L SR + R V NV+S +E YTV+ P GV VS SP F I +++ V+ AT
Sbjct: 756 IAVLNQSRTITRTVTNVAS-DERYTVSYSAPYGVAVSASPAQFFIPSGQRQQVTFVVNAT 814
Query: 781 -NSTRAYSFGAMVLQGNNNHIIRIPIAV 807
N T A SFG++ G+ H + IP +V
Sbjct: 815 MNGTSA-SFGSVGFYGDKGHRVMIPFSV 841
|
|
| TAIR|locus:2027139 ALE1 "AT1G62340" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1453 (516.5 bits), Expect = 7.9e-149, P = 7.9e-149
Identities = 327/802 (40%), Positives = 450/802 (56%)
Query: 17 DFLPLNAKVFIVLMDEEPVTSLKLERSYDRNETDAIVYKERISGGHDRFLESLLHGHSYT 76
D +P K++ +L++ EP L S + N + ++I HD L S L SYT
Sbjct: 43 DHIP---KIYSILVEGEP---LAFRASTNINSKAMALEAKKIEEIHDEILGSTLEKGSYT 96
Query: 77 KLYSYTHLLSGFAIHIESEEAVSTLQNAKGVRIIHEDIKMEKLTMHTPEFLGIPVGVWPT 136
KLYS+ H+++ A+ + +A L KGV+ + ED ++ +T +TP+FL +P VW
Sbjct: 97 KLYSFKHVINAIAVRTTASQA-KKLGKTKGVKAVEEDKGVKLMTTYTPDFLELPQQVWQK 155
Query: 137 LG--GAEFSGEGVVIGFIDTGINPEHPSFAS----HSFRGNQSISKFKGKCTTGNRFPST 190
+ G +GE +VIGF+DTGINP HPSFA+ + + N S F G C G FP
Sbjct: 156 ISNEGDRRAGEDIVIGFVDTGINPTHPSFAALDLTNPYSSNLSRLHFSGDCEIGPFFPPG 215
Query: 191 ACNSKIVGAQYFARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNY 250
+CN KI+ A++F+ A A G NS+ D SPFDA GHGSH AS AAGN VPVIV GF Y
Sbjct: 216 SCNGKIISARFFSAGARASGALNSSLDILSPFDASGHGSHVASIAAGNAGVPVIVDGFFY 275
Query: 251 GYASGMAPGARIAVYKALYTFGGYMXXXXXXXXXXXXXXXXIISLSVGPSAVPSGPAAFL 310
G ASGMAP +RIAVYKA+Y G + +++LSVGP P L
Sbjct: 276 GRASGMAPRSRIAVYKAIYPSIGTLVDVIAAIDQAIMDGVDVLTLSVGPDEPPVDKPTVL 335
Query: 311 NALEMELLFATKAGVLVVQAAGNXXXXXXXXXXXXXXXXXIAASITDRKYNNTIKLANGH 370
++ +L A KAGV VVQA GN +AA TDR Y + L G
Sbjct: 336 GIFDLAMLLARKAGVFVVQAVGNNGPSPSSVLSYSPWVVGVAAGNTDRSYPAPLILDGGQ 395
Query: 371 SFSGIGLAPPTLGR--VYYPLAAAADVCHRNVSTG---IFSLESCQYPELFIPALVRGKL 425
+ G+GL+ PTLG V + L A D N S +E CQ PE F PA V G +
Sbjct: 396 TVQGVGLSGPTLGAPLVQHRLVLAKDAVRTNGSVLQPLTRDIEECQRPENFDPAAVFGSI 455
Query: 426 IICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNN 485
+ICT+S F N +T+ + + + GFIL +P F + + PGI++
Sbjct: 456 VICTFSDGFYNQMSTVLAITQTARTLGFMGFILIANPR--FGDYVAEPVIFSAPGILIPT 513
Query: 486 MQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPVVASYSSRGPDVNNA 545
+ ++ +L YY T + G A F ARARI +GR +++ G+APVV+ +SSRGP +A
Sbjct: 514 VSAAQIILRYYEEKTFRDTRGVATQFGARARIGEGRNSVFAGKAPVVSRFSSRGPAFIDA 573
Query: 546 LLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQ 605
DVLKP+I+APG IW AWS S DP L GR+FA+LSGTSMATPHIAG+ ALIKQ
Sbjct: 574 TRSPLDVLKPDILAPGHQIWGAWSLPSAFDPILTGRSFAILSGTSMATPHIAGIGALIKQ 633
Query: 606 RHPKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGFINPAR 665
+P W+PA I SA+ T+A D +G I A+ Y S + + FD GAG +NPAR
Sbjct: 634 LNPSWTPAMIASAISTTANEYDSNGEIISAEYYELSRLFP-----SNHFDHGAGHVNPAR 688
Query: 666 AIDPGLIFNAHFQEYVQFLCAVPGVDDDYVRRVTGYGCPTENQGWCSDLNTPSITISNLV 725
A+DPGL+ A F++Y+ FLC++P + +R TG C T ++LN PS+TIS L
Sbjct: 689 ALDPGLVLPAGFEDYISFLCSLPNISPATIRDATGVLCTT-TLSHPANLNHPSVTISALK 747
Query: 726 GSRKVIRRVRNVSSANETYTVTVKEPSGVKVSVSPQVFKIRGLASRELKIVLKATNSTRA 785
S V R ++VS+ ETY +V P+G V ++P F + +++L I T
Sbjct: 748 ESLVVRRSFQDVSNKTETYLGSVLPPNGTTVRLTPTWFTVPPQKTQDLDIEFNVTQVLNK 807
Query: 786 YSFGAMVLQGNNNHIIRIPIAV 807
++FG +VL G+ NHIIRIP++V
Sbjct: 808 FTFGEVVLTGSLNHIIRIPLSV 829
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| TAIR|locus:2204619 AT1G30600 "AT1G30600" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1448 (514.8 bits), Expect = 2.7e-148, P = 2.7e-148
Identities = 321/804 (39%), Positives = 459/804 (57%)
Query: 21 LNAKVFIVLMDEEPVTSLKLERSYDRNE----TDAIVYKE-----RISGGHDRFLESLLH 71
+++ V+IV + + P S D T + +Y+ I HD L ++L
Sbjct: 32 VSSAVYIVTLKDRPSVHFSGRESSDSKHSLTATSSQIYRTLNRSASIIRVHDSLLRNVLR 91
Query: 72 GHSYTKLYSYTHLLSGFAIHIESEEAVSTLQNAKGVRIIHEDIKMEKLTMHTPEFLGIPV 131
+Y KLYSY +L++GF+ + ++A L + V + D +EK T HTP+FLG+P
Sbjct: 92 KENYLKLYSYHYLINGFSAVLTRKQA-DRLAAREEVENVVLDFLVEKATTHTPQFLGLPR 150
Query: 132 GVWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISK-FKGKCTTGNRFPST 190
G W GG+E++GEGVVIGFIDTGI+P HPSF+ S+ F G C FP
Sbjct: 151 GAWLRDGGSEYAGEGVVIGFIDTGIDPTHPSFSDKISGHTYSVPPHFTGVCEVTIGFPPG 210
Query: 191 ACNSKIVGAQYFARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNY 250
+CN K++GA++FA +A++ G NS++D ASPFD +GHG+HTAS AAGNH +PV+V+G
Sbjct: 211 SCNRKLIGARHFAESALSRGVLNSSQDDASPFDGEGHGTHTASVAAGNHGIPVVVAGHRL 270
Query: 251 GYASGMAPGARIAVYKALYT-FGGYMXXXXXXXXXXXXXXXXIISLSVGPSAVPSGPAAF 309
G ASGMAP A IA+YKALY FGG+ II+LS+ P+ P G A F
Sbjct: 271 GNASGMAPRAHIAIYKALYKRFGGFAADIIAAIDQAAQDGVDIINLSITPNRRPPGIATF 330
Query: 310 LNALEMELLFATKAGVLVVQAAGNXXXXXXXXXXXXXXXXXIAASITDRKYNNTIKLANG 369
N ++M LL A KAG+ VVQAAGN + A+ DR Y+N+I L N
Sbjct: 331 FNPIDMALLSAVKAGIFVVQAAGNTGPAPKSMSSFSPWIFTVGATSHDRVYSNSIILGNN 390
Query: 370 HSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLE--SCQYPELFIPALVRGKLII 427
+ G+GLA T R+ + L A RN +T + ++ CQ F LV+GK+++
Sbjct: 391 VTIPGVGLASGT--RIMHKLVLATHAL-RNGTTVMDAIYVGECQDSSSFDQKLVQGKILV 447
Query: 428 CTYSFDFENDDATIATVADNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQ 487
C+Y+ F +TI K + AAG + +DP + + +D+PGI++++ Q
Sbjct: 448 CSYTVRFILGVSTIKQALLTAKNLTAAGLVFYIDPSA--TGFQMTSSPMDIPGILISSPQ 505
Query: 488 SSMDLLEYYNSHTIKSRAGQAVVFHAR-ARILDGRRAIYHGQAPVVASYSSRGPDVNNAL 546
S LL YYNS ++ +V A A+I+ G R Y AP V +S+RGPD +
Sbjct: 506 DSQALLRYYNSSLLRENGSGKIVGSASVAKIVGGMRPTYGITAPKVMYFSARGPDPEDDS 565
Query: 547 LQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQR 606
AD++KPN++APG++IW AWSP G + +G FA+ SGTSM+ PH+ G+AALIKQ+
Sbjct: 566 FVDADIMKPNLVAPGNAIWGAWSPLGIGTNDFQGERFAMESGTSMSAPHVTGIAALIKQK 625
Query: 607 HPKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGFINPARA 666
P ++PAAI SA+ T+A ++D G I+AQ +P + ATPFD G+GF+N A
Sbjct: 626 FPHFTPAAIASALSTTASLSDRKGEHIMAQRTVLNPDISQS--PATPFDMGSGFVNATAA 683
Query: 667 IDPGLIFNAHFQEYVQFLCAVPGVDDDYVRRVTGYGCPTENQGWC-SDLNTPSITISNLV 725
+DPGLIF+ + EY++FLC + G V TG C + N SDLN PS+TI+ LV
Sbjct: 684 LDPGLIFDIGYNEYMKFLCGING-SSPVVLNYTGESCSSYNSSLAASDLNLPSVTIAKLV 742
Query: 726 GSRKVIRRVRNVSSA--NETYTVTVKEPSGVKVSVSPQVFKIRGLASRELKIVLKATNST 783
G+R V+R V N+++ NETY V P V V VSP F I +R L +V +A +
Sbjct: 743 GTRAVLRWVTNIATTATNETYIVGWMAPDSVSVKVSPAKFTIGNGQTRVLSLVFRAMKNV 802
Query: 784 RAYSFGAMVLQGNNNHIIRIPIAV 807
SFG + L G+ H++ IP+AV
Sbjct: 803 SMASFGRIGLFGDRGHVVNIPVAV 826
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| TAIR|locus:2091010 AT3G14240 "AT3G14240" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 449 (163.1 bits), Expect = 3.5e-77, Sum P(2) = 3.5e-77
Identities = 119/356 (33%), Positives = 175/356 (49%)
Query: 78 LYSYTHLLSGFAIHIESEEAVSTLQNAKGVRIIHEDIKMEKLTMHTPEFLGI-PVGVWPT 136
+++Y + GF+ + S++A L + + +I E ++ T +PEFLG+
Sbjct: 63 IHTYDTVFHGFSARLTSQDASQLLDHPHVISVIPEQVR-HLHTTRSPEFLGLRSTDKAGL 121
Query: 137 LGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKI 196
L ++F G +VIG IDTG+ PE PSF G I K+KG+C FP +ACN K+
Sbjct: 122 LEESDF-GSDLVIGVIDTGVWPERPSFDDRGL-GPVPI-KWKGQCIASQDFPESACNRKL 178
Query: 197 VGAQYFARAAIAY-GDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASG 255
VGA++F A G N T ++ SP D+DGHG+HTAS +AG + P G+ +G A+G
Sbjct: 179 VGARFFCGGYEATNGKMNETTEFRSPRDSDGHGTHTASISAGRYVFPASTLGYAHGVAAG 238
Query: 256 MAPGARIAVYKALYTFGGYMXXXXXXXXXXXXXXXXIISLSVGPSAVPSGPAAFLNALEM 315
MAP AR+A YK + G Y +ISLSVG VP +L+A+ +
Sbjct: 239 MAPKARLAAYKVCWNSGCYDSDILAAFDTAVADGVDVISLSVGGVVVPY----YLDAIAI 294
Query: 316 ELLFATKAGVLVVQAAGNXXXXXXXXXXXXXXXXXIAASITDRKYNNTIKLANGHSFSGI 375
A G+ V +AGN + A DR + +KL NG SG+
Sbjct: 295 GAFGAIDRGIFVSASAGNGGPGALTVTNVAPWMTTVGAGTIDRDFPANVKLGNGKMISGV 354
Query: 376 GL-APPTL--GRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIIC 428
+ P L GR+Y PL + + G +S C L P LV+GK+++C
Sbjct: 355 SVYGGPGLDPGRMY-PLVYGGSLLGGD---G-YSSSLCLEGSLD-PNLVKGKIVLC 404
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.21 | 0.766 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00012844001 | SubName- Full=Chromosome undetermined scaffold_406, whole genome shotgun sequence; (813 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 813 | |||
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 7e-98 | |
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 4e-33 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 8e-27 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 2e-26 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 7e-25 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 8e-21 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 4e-20 | |
| cd04848 | 267 | cd04848, Peptidases_S8_Autotransporter_serine_prot | 1e-19 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 3e-18 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 1e-17 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 2e-16 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 3e-16 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 5e-16 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 1e-15 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 3e-15 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 3e-15 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 3e-14 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 6e-14 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 1e-13 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 4e-13 | |
| cd07481 | 264 | cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep | 4e-13 | |
| cd07482 | 294 | cd07482, Peptidases_S8_Lantibiotic_specific_protea | 3e-12 | |
| cd02120 | 126 | cd02120, PA_subtilisin_like, PA_subtilisin_like: P | 5e-12 | |
| cd07481 | 264 | cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep | 9e-12 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 2e-11 | |
| cd07480 | 297 | cd07480, Peptidases_S8_12, Peptidase S8 family dom | 5e-11 | |
| cd04842 | 293 | cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 | 5e-11 | |
| cd04842 | 293 | cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 | 9e-11 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 1e-10 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 2e-10 | |
| COG1404 | 508 | COG1404, AprE, Subtilisin-like serine proteases [P | 7e-10 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 1e-09 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 1e-09 | |
| cd07493 | 261 | cd07493, Peptidases_S8_9, Peptidase S8 family doma | 1e-09 | |
| cd07498 | 242 | cd07498, Peptidases_S8_15, Peptidase S8 family dom | 1e-09 | |
| cd05562 | 275 | cd05562, Peptidases_S53_like, Peptidase domain in | 3e-09 | |
| cd07496 | 285 | cd07496, Peptidases_S8_13, Peptidase S8 family dom | 3e-09 | |
| cd07478 | 455 | cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam | 9e-09 | |
| cd04848 | 267 | cd04848, Peptidases_S8_Autotransporter_serine_prot | 1e-08 | |
| cd07480 | 297 | cd07480, Peptidases_S8_12, Peptidase S8 family dom | 1e-08 | |
| cd07496 | 285 | cd07496, Peptidases_S8_13, Peptidase S8 family dom | 3e-08 | |
| TIGR03921 | 350 | TIGR03921, T7SS_mycosin, type VII secretion-associ | 3e-08 | |
| cd07497 | 311 | cd07497, Peptidases_S8_14, Peptidase S8 family dom | 5e-08 | |
| TIGR03921 | 350 | TIGR03921, T7SS_mycosin, type VII secretion-associ | 7e-08 | |
| cd07478 | 455 | cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam | 9e-08 | |
| cd07485 | 273 | cd07485, Peptidases_S8_Fervidolysin_like, Peptidas | 1e-06 | |
| cd04857 | 412 | cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_ | 2e-06 | |
| cd07498 | 242 | cd07498, Peptidases_S8_15, Peptidase S8 family dom | 3e-06 | |
| cd07497 | 311 | cd07497, Peptidases_S8_14, Peptidase S8 family dom | 4e-06 | |
| cd04857 | 412 | cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_ | 6e-06 | |
| cd05561 | 239 | cd05561, Peptidases_S8_4, Peptidase S8 family doma | 7e-06 | |
| cd07476 | 267 | cd07476, Peptidases_S8_thiazoline_oxidase_subtilis | 9e-06 | |
| cd05562 | 275 | cd05562, Peptidases_S53_like, Peptidase domain in | 7e-05 | |
| COG1404 | 508 | COG1404, AprE, Subtilisin-like serine proteases [P | 9e-05 | |
| cd07479 | 255 | cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 fa | 9e-05 | |
| cd05561 | 239 | cd05561, Peptidases_S8_4, Peptidase S8 family doma | 4e-04 | |
| pfam05922 | 76 | pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | 4e-04 | |
| cd07485 | 273 | cd07485, Peptidases_S8_Fervidolysin_like, Peptidas | 7e-04 | |
| TIGR03895 | 602 | TIGR03895, protease_PatA, cyanobactin maturation p | 0.001 | |
| cd04056 | 361 | cd04056, Peptidases_S53, Peptidase domain in the S | 0.001 | |
| cd04059 | 297 | cd04059, Peptidases_S8_Protein_convertases_Kexins_ | 0.001 | |
| cd07494 | 298 | cd07494, Peptidases_S8_10, Peptidase S8 family dom | 0.002 | |
| cd07483 | 291 | cd07483, Peptidases_S8_Subtilisin_Novo-like, Pepti | 0.002 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 306 bits (786), Expect = 7e-98
Identities = 111/239 (46%), Positives = 156/239 (65%), Gaps = 7/239 (2%)
Query: 117 EKLTMHTPEFLGIPVGVWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISK 176
+ T +P+FLG+P +L GA +GEG++IG +DTGI PEHPSFA
Sbjct: 2 QLHTTRSPDFLGLPGAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGP--YPHT 59
Query: 177 FKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYASPFDADGHGSHTASTAA 236
+ G C TG F +CN+K++GA+YF+ AYG FNS +Y SP D DGHG+HTASTAA
Sbjct: 60 WPGDCVTGEDFNPFSCNNKLIGARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAA 119
Query: 237 GNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFGG-YMADVVAAVDQAVEDGVDIISL 295
GN V V GF +G ASG+AP ARIAVYK + GG + +D++AA+DQA+ DGVD+IS
Sbjct: 120 GNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGCFGSDILAAIDQAIADGVDVISY 179
Query: 296 SVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSSSILSFSPWITSIAAS 354
S+G + + + + + L A +AG+ V +AGNSGP +S++ + +PW+T++AAS
Sbjct: 180 SIGGGSPDP----YEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAS 234
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This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 4e-33
Identities = 52/101 (51%), Positives = 64/101 (63%), Gaps = 7/101 (6%)
Query: 530 PVVASYSSRGPD----VNNALLQT---ADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRN 582
V AS + GP N A T A LKP+I APG I AAW+P + +G +
Sbjct: 206 FVAASAGNSGPGASTVPNVAPWVTTVAASTLKPDIAAPGVDILAAWTPEGADPGDARGED 265
Query: 583 FALLSGTSMATPHIAGVAALIKQRHPKWSPAAITSAMMTSA 623
FA +SGTSMA+PH+AGVAAL+K HP WSPAAI SA+MT+A
Sbjct: 266 FAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTA 306
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 8e-27
Identities = 66/250 (26%), Positives = 104/250 (41%), Gaps = 64/250 (25%)
Query: 144 GEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFA 203
G+G+ + +DTGI+ HP F R
Sbjct: 1 GKGITVAVLDTGIDAPHPDFDGRIIRF--------------------------------- 27
Query: 204 RAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIA 263
+ + + R P+D +GHG+H A AG+ R G G+APGA +
Sbjct: 28 ---ADFVNTVNGRTT--PYDDNGHGTHVAGIIAGSGRAS-------NGKYKGVAPGANLV 75
Query: 264 VYKALYTFG-GYMADVVAAVDQAVED----GVDIISLSVGPSAVPSGPAAFLNALEMELL 318
K L G G +D++A +D VE+ + +++LS+G P P+ + L +
Sbjct: 76 GVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLG---APPDPSYGEDPLCQAVE 132
Query: 319 FATKAGVLVVQAAGNSGPSSSSILS--FSPWITSIAASITDRKYNNTIKLANGHSFSGIG 376
AG++VV AAGNSGP +I S SP + ++ A + +++ I FS G
Sbjct: 133 RLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGPHDDGIS-----YFSSRG 187
Query: 377 LAPPTL-GRV 385
PT GR+
Sbjct: 188 ---PTGDGRI 194
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This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 2e-26
Identities = 86/253 (33%), Positives = 112/253 (44%), Gaps = 44/253 (17%)
Query: 144 GEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFA 203
G+GV + IDTGI+ HP F K KG G F V Y
Sbjct: 1 GKGVKVAVIDTGIDYTHPDLGGPGFPN----DKVKG----GYDF---------VDDDYDP 43
Query: 204 RAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIA 263
Y AS DA GHG+H A AGN G N G G+AP A +
Sbjct: 44 MDTRPYPSPL---GDASAGDATGHGTHVAGIIAGN--------GVNVGTIKGVAPKADLY 92
Query: 264 VYKALYTFG-GYMADVVAAVDQAVEDGVDIISLSVGPSAVPSGPAAFLNALEMELLFATK 322
YK L G G ++AA++QAV+DG+D+I+LS+G S+V A+ A K
Sbjct: 93 AYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLG-SSVNGPDDPDAIAINN----AVK 147
Query: 323 AGVLVVQAAGNSGPSSSSILS--FSPWITSIAAS-ITDRKYNNTIKLANGHSFSGIGLAP 379
AGV+VV AAGNSGP+ +I S +P ++ AS + D +T+ S G P
Sbjct: 148 AGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVADVAEADTVG-----PSSSRG--P 200
Query: 380 PTLGRVYYPLAAA 392
PT P A
Sbjct: 201 PTSDSAIKPDIVA 213
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 7e-25
Identities = 49/139 (35%), Positives = 67/139 (48%), Gaps = 31/139 (22%)
Query: 528 QAPVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLS 587
+A V SSRGP +++ + KP+I+APG I + S G +A +S
Sbjct: 188 EADTVGPSSSRGPPTSDSAI------KPDIVAPGVDIMSTAPGSGTG--------YARMS 233
Query: 588 GTSMATPHIAGVAALIKQRHPKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHV 647
GTSMA PH+AG AAL+KQ HP WSPA I +A+M +A+ S
Sbjct: 234 GTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDG---------------- 277
Query: 648 LVHATPFDFGAGFINPARA 666
V GAG ++ RA
Sbjct: 278 -VVYPVSRQGAGRVDALRA 295
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 91.8 bits (229), Expect = 8e-21
Identities = 59/196 (30%), Positives = 82/196 (41%), Gaps = 57/196 (29%)
Query: 146 GVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARA 205
GV + IDTGI+ HP + G G TG
Sbjct: 1 GVKVAVIDTGIDSSHPDLKL-NIVG--------GANFTG--------------------- 30
Query: 206 AIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVY 265
D N +D +GHG+H A A +V G+AP A +
Sbjct: 31 ----DDNNDYQDG------NGHGTHVAGIIAALDNGVGVV---------GVAPEADLYAV 71
Query: 266 KALYTFG-GYMADVVAAVDQAVEDGVDIISLSVGPSAVPSGPAAFLNALEMELLFATKAG 324
K L G G +D++A ++ A+E+G+DII++S+G PS A A++ A AG
Sbjct: 72 KVLNDDGSGTYSDIIAGIEWAIENGMDIINMSLG---GPSDSPALREAIK----KAYAAG 124
Query: 325 VLVVQAAGNSGPSSSS 340
+LVV AAGNSG SS
Sbjct: 125 ILVVAAAGNSGNGDSS 140
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 90.0 bits (223), Expect = 4e-20
Identities = 60/216 (27%), Positives = 85/216 (39%), Gaps = 59/216 (27%)
Query: 147 VVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAA 206
V + IDTG++P+HP G+
Sbjct: 1 VTVAVIDTGVDPDHPDLDGLFGGGDGG--------------------------------- 27
Query: 207 IAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYK 266
D ++ P D +GHG+H A A + N G G+APGA++ K
Sbjct: 28 --NDDDDNENGPTDPDDGNGHGTHVAGIIAASA---------NNGGGVGVAPGAKLIPVK 76
Query: 267 ALYTFG-GYMADVVAAVDQAVED-GVDIISLSVGPSAVPSGP---AAFLNALEMELLFAT 321
L G G +D+ AA+D A D G D+I+LS+G P A AL
Sbjct: 77 VLDGDGSGSSSDIAAAIDYAAADQGADVINLSLGGPGSPPSSALSEAIDYALA------- 129
Query: 322 KAGVLVVQAAGNSGPSSSSILSF---SPWITSIAAS 354
K GVLVV AAGN GP + + + SP + ++ A
Sbjct: 130 KLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAV 165
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 1e-19
Identities = 56/211 (26%), Positives = 75/211 (35%), Gaps = 56/211 (26%)
Query: 143 SGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYF 202
+G GV +G ID+GI+ HP FA +
Sbjct: 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEAS------------------------------- 29
Query: 203 ARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARI 262
Y + YAS D D HG+H A A + G G+AP A +
Sbjct: 30 ------YYVAVNDAGYASNGDGDSHGTHVAGVIAAA---------RDGGGMHGVAPDATL 74
Query: 263 AVYKALYTFGGY--MADVVAAVDQAVEDGVDIISLSVGPSA--------VPSGPAAFLNA 312
+A + G AD+ AA D GV II+ S G + A N
Sbjct: 75 YSARASASAGSTFSDADIAAAYDFLAASGVRIINNSWGGNPAIDTVSTTYKGSAATQGNT 134
Query: 313 LEMELLFATKAGVLVVQAAGNSGPSSSSILS 343
L L A AG L V AAGN G ++ S+ +
Sbjct: 135 LLAALARAANAGGLFVFAAGNDGQANPSLAA 165
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 86.6 bits (215), Expect = 3e-18
Identities = 59/210 (28%), Positives = 85/210 (40%), Gaps = 36/210 (17%)
Query: 142 FSGEGVVIGFIDTGINPEHPSFASHS-----FRGNQSISKFKGKCTTGNRFPSTACNSKI 196
+ GEG+V+ ID+G++P H +F + K K G + N K+
Sbjct: 8 YKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGIGYGKYY-----NEKV 62
Query: 197 VGAQYFARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGM 256
A +A D D S HG H A AGN N G+
Sbjct: 63 PFAYNYAD----NNDDILDEDDGSS-----HGMHVAGIVAGNG-----DEEDNGEGIKGV 108
Query: 257 APGARIAVYKALYTFGG---YMADVVAAVDQAVEDGVDIISLSVGPSAVPSGPAAFLNAL 313
AP A++ K G Y A++ AV+ G D+I++S+G A F++
Sbjct: 109 APEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVKLGADVINMSLG------STAGFVDLD 162
Query: 314 EMELL---FATKAGVLVVQAAGNSGPSSSS 340
+ E A +AGV+VV AAGN G S S
Sbjct: 163 DPEQQAIKRAREAGVVVVVAAGNDGNSGSG 192
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 1e-17
Identities = 57/195 (29%), Positives = 79/195 (40%), Gaps = 40/195 (20%)
Query: 142 FSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQY 201
+G+GV + +DTGI+ HP+ G C G K+ G
Sbjct: 10 ITGKGVKVAVVDTGIDYTHPAL---------------GGCF-GPGC-------KVAGGYD 46
Query: 202 FARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGAR 261
F Y N P D GHG+H A A N YG+ +G+AP A
Sbjct: 47 FVGDD--YDGTNPPVPDDDPMDCQGHGTHVAGIIAAN--------PNAYGF-TGVAPEAT 95
Query: 262 IAVYKALYTFGGYMADV-VAAVDQAVEDGVDIISLSVGPSAVPSGPAAFLNALEMELLFA 320
+ Y+ G D +AA +A EDG D+I+ S+G PSG + + +
Sbjct: 96 LGAYRVFGCSGSTTEDTIIAAFLRAYEDGADVITASLG---GPSGWSE--DPWAVVASRI 150
Query: 321 TKAGVLVVQAAGNSG 335
AGV+V AAGN G
Sbjct: 151 VDAGVVVTIAAGNDG 165
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 80.3 bits (199), Expect = 2e-16
Identities = 51/151 (33%), Positives = 73/151 (48%), Gaps = 30/151 (19%)
Query: 519 DGRRAIYHGQAPVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNL 578
GR I A V + +SS GP N L LKP++ APG +I + + P
Sbjct: 177 SGRGVI--AVASVDSYFSSWGP--TNELY-----LKPDVAAPGGNILSTY-------PLA 220
Query: 579 KGRNFALLSGTSMATPHIAGVAALIKQ-RHPKWSPAAITSAMMTSAEVTDHSGSPILAQD 637
G +A+LSGTSMATP++AG AAL+ Q RH K SPA + + ++A P+ D
Sbjct: 221 GG-GYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTA-------KPLPWSD 272
Query: 638 YSDSPILEHVLVHATPFDFGAGFINPARAID 668
+ + A GAG +N +A+
Sbjct: 273 GTSAL-----PDLAPVAQQGAGLVNAYKALY 298
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 79.2 bits (196), Expect = 3e-16
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 10/93 (10%)
Query: 532 VASYSSRGPDVNNALLQTAD-VLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTS 590
++ +SSRGP T D +KP+++APG +I + SP + F + SGTS
Sbjct: 180 ISYFSSRGP--------TGDGRIKPDVVAPGENIVSCRSPGGNPGAGVGSGYFEM-SGTS 230
Query: 591 MATPHIAGVAALIKQRHPKWSPAAITSAMMTSA 623
MATPH++G AL+ Q +P +P + + +A
Sbjct: 231 MATPHVSGAIALLLQANPILTPDEVKCILRDTA 263
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 5e-16
Identities = 35/137 (25%), Positives = 58/137 (42%), Gaps = 36/137 (26%)
Query: 532 VASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSM 591
+A +S+ G V+ KP+I+APG +I ++ G + SGTSM
Sbjct: 177 IADFSNYGGPVDGI--------KPDIVAPGGNILSSGPGGDLGG-------YDSHSGTSM 221
Query: 592 ATPHIAGVAALIKQRHPKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHA 651
A P +AG AAL+ +P +P + + ++T+A S L+
Sbjct: 222 AAPLVAGAAALLLSANPSLTPETLRALLVTTAT-------------DLGSMGLDRS---- 264
Query: 652 TPFDFGAGFINPARAID 668
FG G +N +A+
Sbjct: 265 ----FGYGLLNLGKAVK 277
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 1e-15
Identities = 64/229 (27%), Positives = 90/229 (39%), Gaps = 63/229 (27%)
Query: 134 WPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACN 193
W GG+ GV + +DTG++P HP K K G
Sbjct: 22 WDITGGS-----GVTVAVVDTGVDPTHPDLL-------------KVKFVLG--------- 54
Query: 194 SKIVGAQYFARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYA 253
DF D D +GHG+H A A + G A
Sbjct: 55 ----------------YDF-VDNDSD-AMDDNGHGTHVAGIIAAA-------TNNGTGVA 89
Query: 254 SGMAPGARIAVYKALYTFG-GYMADVVAAVDQAVEDGVDIISLSVGPSAVPSGPAAFLNA 312
G+AP A+I K L G G +AD+ + A + G +I+LS+G + S A
Sbjct: 90 -GVAPKAKIMPVKVLDANGSGSLADIANGIRYAADKGAKVINLSLG-GGLGS------TA 141
Query: 313 LEMELLFATKAGVLVVQAAGNSGPSSSSILSFSPWITSIAASITDRKYN 361
L+ + +A GV+VV AAGN G SS S + P ++AA TD+
Sbjct: 142 LQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAA--TDQDDK 188
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 3e-15
Identities = 42/196 (21%), Positives = 64/196 (32%), Gaps = 48/196 (24%)
Query: 148 VIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAI 207
+G +DTGI+ HP + F
Sbjct: 1 TVGVLDTGIDVNHPDLSGR------------------------YIGLAYRNGYDFVDNDP 36
Query: 208 AYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKA 267
+ D +GHG+H A A G AP A++ K
Sbjct: 37 DPTPDD---------DNNGHGTHVAGIIAAGDNNGSGGVGV--------APNAKLESVKV 79
Query: 268 LYTFGGYMADVVAAVDQAVE--DGVDIISLSVGPSAVP--SGPAAFLNALEMELLFATKA 323
L GG +++ A++ A E + + +I++S+GP P S +A A
Sbjct: 80 LPGSGGTDSELAGAIEWAAERPNDIRVINMSLGPVDGPPSSWSSAIDELAVNG---ADNK 136
Query: 324 GVLVVQAAGNSGPSSS 339
G L V AAGN G +
Sbjct: 137 GSLFVVAAGNGGDYAD 152
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 3e-15
Identities = 55/236 (23%), Positives = 88/236 (37%), Gaps = 56/236 (23%)
Query: 146 GVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARA 205
GV + +DTG++ +HP A ++ F
Sbjct: 1 GVTVAVLDTGVDADHPDLAG-----------------------------RVAQWADF--- 28
Query: 206 AIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVY 265
D N FDA GHG+H + T G G G G+AP A +
Sbjct: 29 -----DENRRISATEVFDAGGHGTHVSGTIGG---------GGAKGVYIGVAPEADLLHG 74
Query: 266 KALYTFGGYMADVVAAVDQAVEDGVDIISLSVGPSAVPSGP-AAFLNALEMELLFATKAG 324
K L GG ++ ++A ++ AVE D++S+S+G + P + AL + G
Sbjct: 75 KVLDDGGGSLSQIIAGMEWAVEKDADVVSMSLGGTYYSEDPLEEAVEALSNQ------TG 128
Query: 325 VLVVQAAGNSGPSSSSILSFSPWITSIAASITDRKYNNTIKLANGHSFSGIGLAPP 380
L V +AGN G +S + S+ A DR + ++ S ++ P
Sbjct: 129 ALFVVSAGNEGHGTSGSPGSAYAALSVGA--VDR-DDEDAWFSSFGSSGASLVSAP 181
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 3e-14
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 23/92 (25%)
Query: 531 VVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTS 590
AS+SS GP+V + APG I + + + ++A LSGTS
Sbjct: 161 NRASFSSTGPEVE-------------LAAPGVDILSTYPNN----------DYAYLSGTS 197
Query: 591 MATPHIAGVAALIKQRHPKWSPAAITSAMMTS 622
MATPH+AGVAAL+ + P+ + A + A+ +
Sbjct: 198 MATPHVAGVAALVWSKRPELTNAQVRQALNKT 229
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 6e-14
Identities = 57/215 (26%), Positives = 82/215 (38%), Gaps = 40/215 (18%)
Query: 146 GVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARA 205
VV+ IDTG++ HP + + N G GN + V Y
Sbjct: 3 DVVVAVIDTGVDYNHPDLKDNMWV-NPGEIPGNGIDDDGNGY---------VDDIYGWNF 52
Query: 206 AIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVY 265
D P D +GHG+H A G N +G+A +I
Sbjct: 53 VNNDND---------PMDDNGHGTHVAGIIGA--------VGNNGIGIAGVAWNVKIMPL 95
Query: 266 KALYTFG-GYMADVVAAVDQAVEDGVDIISLSVGPSAVPSGPAAFLNALEMELLFATKAG 324
K L G G +D + A+D AV+ G II+ S G A +A+ A AG
Sbjct: 96 KFLGADGSGTTSDAIKAIDYAVDMGAKIINNSWGG---GGPSQALRDAIAR----AIDAG 148
Query: 325 VLVVQAAGNSGPSSSSILSF-----SPWITSIAAS 354
+L V AAGN G ++ ++ I S+AA+
Sbjct: 149 ILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAAT 183
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 1e-13
Identities = 44/149 (29%), Positives = 69/149 (46%), Gaps = 42/149 (28%)
Query: 529 APVVASYSSRGPDVNNALLQTADV-LKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLS 587
++ +SS GP T D+ LKP+I APG +I++ + + +S
Sbjct: 231 GGQMSGFSSWGP--------TPDLDLKPDITAPGGNIYST----------VNDNTYGYMS 272
Query: 588 GTSMATPHIAGVAALIKQR----HPKWSPAAITS----AMMTSAEVTDHSGSPILAQDYS 639
GTSMA+PH+AG +AL+KQR +PK S + +M +A P L + +
Sbjct: 273 GTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTAT-------PPLDSEDT 325
Query: 640 DSPILEHVLVHATPFDFGAGFINPARAID 668
+ +P GAG I+ A+AI
Sbjct: 326 KTYY--------SPRRQGAGLIDVAKAIA 346
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 69.9 bits (171), Expect = 4e-13
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 551 DVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKW 610
+ KP++ APG +++A ++ + LSGTSMA PH+AGVAAL+ HP
Sbjct: 187 EYTKPDVAAPGVDVYSARQGANGDG------QYTRLSGTSMAAPHVAGVAALLAAAHPDL 240
Query: 611 SPAAITSAMMTSA 623
SP I A+ +A
Sbjct: 241 SPEQIKDALTETA 253
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 4e-13
Identities = 67/250 (26%), Positives = 94/250 (37%), Gaps = 57/250 (22%)
Query: 144 GEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFA 203
G G+V+ IDTG++ HP+ + +RG G+
Sbjct: 1 GTGIVVANIDTGVDWTHPALKN-KYRGW----------GGGSADHD-------------- 35
Query: 204 RAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGAR-I 262
Y F+ + P+D +GHG+HT T GN G G+APGAR I
Sbjct: 36 -----YNWFDPVGNTPLPYDDNGHGTHTMGTMVGNDGD---------GQQIGVAPGARWI 81
Query: 263 AVYKALYTFGGYMADVVAAVDQAVEDGVDIISLSVGPSAVP-------SGPAAFLNALEM 315
A +AL GG AD + Q + D P P GP+ L+
Sbjct: 82 AC-RALDRNGGNDADYLRCA-QWMLAPTDSAGNPADPDLAPDVINNSWGGPSGDNEWLQP 139
Query: 316 ELLFATKAGVLVVQAAGNSGPSSSSILSFSPWITSIAASITDRKYNNTIKLANGHSFSGI 375
+ AG+ V AAGN GP S++ + P S + LA+ FS
Sbjct: 140 AVAAWRAAGIFPVFAAGNDGPRCSTLNA-PPANY--PESFAVGATDRNDVLAD---FSSR 193
Query: 376 GLAPPTLGRV 385
G P T GR+
Sbjct: 194 G--PSTYGRI 201
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264 |
| >gnl|CDD|173808 cd07482, Peptidases_S8_Lantibiotic_specific_protease, Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 3e-12
Identities = 53/194 (27%), Positives = 79/194 (40%), Gaps = 44/194 (22%)
Query: 147 VVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAA 206
V + ID+GI+P+HP + SIS + + + Y + A
Sbjct: 2 VTVAVIDSGIDPDHPDLKN-------SISSYS--------------KNLVPKGGYDGKEA 40
Query: 207 IAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYK 266
GD N D GHG+ A A N G G+APG I Y+
Sbjct: 41 GETGDINDIVDK------LGHGTAVAGQIAAN------------GNIKGVAPGIGIVSYR 82
Query: 267 ALYTFG-GYMADVVAAVDQAVEDGVDIISLSVGPSAVPSGP----AAFLNALEMELLFAT 321
+ G + ++ A+ A +DGVD+I+LS+G + G NA + + +A
Sbjct: 83 VFGSCGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIGGEYEDDDVEYNAYKKAINYAK 142
Query: 322 KAGVLVVQAAGNSG 335
G +VV AAGN G
Sbjct: 143 SKGSIVVAAAGNDG 156
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 294 |
| >gnl|CDD|239035 cd02120, PA_subtilisin_like, PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 5e-12
Identities = 32/136 (23%), Positives = 50/136 (36%), Gaps = 18/136 (13%)
Query: 363 TIKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVR 422
+ L NG + G L P L YPL + ++G C L P+ V+
Sbjct: 1 VVTLGNGKTIVGQSLYPGNLKT--YPLVYK------SANSGDVDASLCLPGSLD-PSKVK 51
Query: 423 GKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVPGII 482
GK+++C + + D +K AG IL DP A +P +
Sbjct: 52 GKIVLCDRG-----GNTSRVAKGDAVKAAGGAGMILANDPTDGLDVVAD---AHVLPAVH 103
Query: 483 LNNMQSSMDLLEYYNS 498
++ +L Y NS
Sbjct: 104 VDYE-DGTAILSYINS 118
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accumulate extracellularly. Some of the P69 genes are tightly regulated in a tissue specific fashion, and by environmental and developmental signals. For example: infection with avirulent bacteria activates transcription of the genes for the P69 B and C isoforms, the P69 E transcript was detected only in roots, and the P69F transcript only in hydathodes. The Tomato LeSBT2 subtilase transcript was not detected in flowers and roots, but was present in cotyledons and leaves. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 126 |
| >gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 9e-12
Identities = 32/83 (38%), Positives = 43/83 (51%), Gaps = 17/83 (20%)
Query: 526 HGQAPVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFAL 585
+ V+A +SSRGP T +KP+I APG +I +A G +
Sbjct: 181 TDRNDVLADFSSRGP-------STYGRIKPDISAPGVNIRSAV----------PGGGYGS 223
Query: 586 LSGTSMATPHIAGVAALIKQRHP 608
SGTSMA PH+AGVAAL+ +P
Sbjct: 224 SSGTSMAAPHVAGVAALLWSANP 246
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 2e-11
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 8/69 (11%)
Query: 554 KPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPA 613
+I APG I ++ + G +A LSGTSMA P +AGVAAL+ +P +PA
Sbjct: 181 GVDIAAPGGDILSSPTTGGGG--------YATLSGTSMAAPIVAGVAALLLSANPDLTPA 232
Query: 614 AITSAMMTS 622
+ +A++++
Sbjct: 233 QVKAALLST 241
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 5e-11
Identities = 58/219 (26%), Positives = 78/219 (35%), Gaps = 79/219 (36%)
Query: 140 AEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGA 199
+ F+G GV + +DTGI+ HP+FA
Sbjct: 3 SPFTGAGVRVAVLDTGIDLTHPAFAGRDIT------------------------------ 32
Query: 200 QYFARAAIAYGDFNSTRDYA---SPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGM 256
T+ + D GHG+H A T G VP G Y G+
Sbjct: 33 ---------------TKSFVGGEDVQDGHGHGTHCAGTIFGR-DVP----GPRY----GV 68
Query: 257 APGARIAVYKALY-TFGGYMADVVAAVDQAVEDGVDIISLSVG---PSAVPSGP---AAF 309
A GA IA+ + GG ++A + AV +G D+IS+S+G P V G AF
Sbjct: 69 ARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLGADFPGLVDQGWPPGLAF 128
Query: 310 LNALEM---------------ELLFATKAGVLVVQAAGN 333
ALE A G L+V AAGN
Sbjct: 129 SRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGN 167
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297 |
| >gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 5e-11
Identities = 33/75 (44%), Positives = 45/75 (60%), Gaps = 10/75 (13%)
Query: 532 VASYSSRGPDVNNALLQTAD-VLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTS 590
VAS+SSRGP T D +KP+++APG+ I +A S G + + SGTS
Sbjct: 201 VASFSSRGP--------TYDGRIKPDLVAPGTGILSARS-GGGGIGDTSDSAYTSKSGTS 251
Query: 591 MATPHIAGVAALIKQ 605
MATP +AG AAL++Q
Sbjct: 252 MATPLVAGAAALLRQ 266
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293 |
| >gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 9e-11
Identities = 46/203 (22%), Positives = 70/203 (34%), Gaps = 45/203 (22%)
Query: 144 GEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFA 203
G+G ++G DTG++ H F +F + KIV +Y
Sbjct: 6 GKGQIVGVADTGLDTNHCFFYDPNFNKTNLF------------------HRKIV--RY-- 43
Query: 204 RAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIA 263
+ D + D DGHG+H A AG +S + G+AP A++
Sbjct: 44 ---DSLSD--------TKDDVDGHGTHVAGIIAGKGNDSSSISLYK-----GVAPKAKLY 87
Query: 264 VYKALYTFGG--YMADVVAAVDQAVEDGVDIISLSVGPSAVPSGPAAFLNALEM-ELLFA 320
T G D+ + G I S S G P L A + +
Sbjct: 88 FQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNSWG---SPVNNGYTLLARAYDQFAYN 144
Query: 321 TKAGVLVVQAAGNSGPSSSSILS 343
+L V +AGN G S+ +
Sbjct: 145 NP-DILFVFSAGNDGNDGSNTIG 166
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 62.5 bits (153), Expect = 1e-10
Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 8/68 (11%)
Query: 556 NIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAI 615
+I APG I +AW S A LSGTSMA PH+AG+AA + P SPA +
Sbjct: 194 DIFAPGVDILSAWIGSDTA--------TATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEV 245
Query: 616 TSAMMTSA 623
+ ++ A
Sbjct: 246 KARLLNLA 253
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 2e-10
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 10/65 (15%)
Query: 559 APGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAITSA 618
APG I + G + +SGTSMATPH+AG AAL+ +P + A I A
Sbjct: 204 APGVDILSTSP----------GGGYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDA 253
Query: 619 MMTSA 623
+++SA
Sbjct: 254 ILSSA 258
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 61.9 bits (149), Expect = 7e-10
Identities = 61/222 (27%), Positives = 88/222 (39%), Gaps = 53/222 (23%)
Query: 139 GAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVG 198
GA +G+GV + IDTG++ HP A
Sbjct: 136 GAGLTGKGVTVAVIDTGVDASHPDLAG--------------------------------- 162
Query: 199 AQYFARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAP 258
+A+A GDF D +GHG+H A T A N +G+AP
Sbjct: 163 ------SAVAGGDFVDGDPEPPFLDDNGHGTHVAGTIAAVIF-------DNGAGVAGVAP 209
Query: 259 GARIAVYKALYTFGGY--MADVVAAVDQAVEDG--VDIISLSVGPSAVPSGPAAFLNALE 314
GA++ + K L + GG ++DV ++ A G D+I+LS+G S S A +AL
Sbjct: 210 GAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGPADVINLSLGGSLSDSASPALGDALA 269
Query: 315 MELLFATKAGVLVVQAAGNSGPSSSSILSFSPWITSIAASIT 356
A GV++V AAGN G ++S P I
Sbjct: 270 A---AANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIA 308
|
Length = 508 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 1e-09
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 24/91 (26%)
Query: 533 ASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMA 592
AS+S+ G V+ + APG I S ++A +SGTSMA
Sbjct: 190 ASFSNYGKWVD-------------VSAPGGGI-----LS-----TTPDGDYAYMSGTSMA 226
Query: 593 TPHIAGVAALIKQRHPKWSPAAITSAMMTSA 623
TPH+AGVAAL+ + P S + + A+ +A
Sbjct: 227 TPHVAGVAALLYSQGP-LSASEVRDALKKTA 256
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 1e-09
Identities = 50/200 (25%), Positives = 69/200 (34%), Gaps = 72/200 (36%)
Query: 143 SGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYF 202
+G GV + +DTGI H F G R
Sbjct: 23 TGSGVDVYVLDTGIRTTHVEF--------------------GGR---------------- 46
Query: 203 ARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARI 262
AI DF D +GHG+H A T G G+A A +
Sbjct: 47 ---AIWGADFV---GGDPDSDCNGHGTHVAGTVGGK--------------TYGVAKKANL 86
Query: 263 -AVYKALYTFG-GYMADVVAAVDQAVEDGVD-----IISLSVGPSAVPSGPAAFLNALEM 315
AV K L G G ++ ++A ++ D + ++S+G A + AA A
Sbjct: 87 VAV-KVLDCNGSGTLSGIIAGLEWVANDATKRGKPAVANMSLGGGASTALDAAVAAA--- 142
Query: 316 ELLFATKAGVLVVQAAGNSG 335
AGV+VV AAGNS
Sbjct: 143 -----VNAGVVVVVAAGNSN 157
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 1e-09
Identities = 33/95 (34%), Positives = 45/95 (47%), Gaps = 19/95 (20%)
Query: 531 VVASYSSRGPDVNNALLQTAD-VLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGT 589
AS+SS GP TAD LKP++MA G+ I+ N +GT
Sbjct: 185 NKASFSSIGP--------TADGRLKPDVMALGTGIYVINGDG----------NITYANGT 226
Query: 590 SMATPHIAGVAALIKQRHPKWSPAAITSAMMTSAE 624
S + P IAG+ A + Q HP W+ I A++ SA
Sbjct: 227 SFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 261 |
| >gnl|CDD|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 1e-09
Identities = 54/214 (25%), Positives = 85/214 (39%), Gaps = 60/214 (28%)
Query: 147 VVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAA 206
VV+ IDTG++ HP + +
Sbjct: 1 VVVAIIDTGVDLNHPDLS--------------------------------------GKPK 22
Query: 207 IAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGY-ASGMAPGARI-AV 264
+ G +N + D DGHG+ A AA N G +G+APGA++ V
Sbjct: 23 LVPG-WNFVSNNDPTSDIDGHGTACAGVAAAVG---------NNGLGVAGVAPGAKLMPV 72
Query: 265 YKALYTFGGYMADVVAAVDQAVEDGVDIISLSVGPSAVPSGPAAFLNALEMELLFATKA- 323
A Y +D+ A+ A ++G D+IS S G S ++ ++ AT
Sbjct: 73 RIADSLGYAYWSDIAQAITWAADNGADVISNSWGGSDSTESISSAIDNA------ATYGR 126
Query: 324 ---GVLVVQAAGNSGPSSSSILSFSPWITSIAAS 354
G +V+ AAGNSG S SS + +P + ++AA+
Sbjct: 127 NGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAAT 160
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 242 |
| >gnl|CDD|173798 cd05562, Peptidases_S53_like, Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 3e-09
Identities = 36/152 (23%), Positives = 53/152 (34%), Gaps = 36/152 (23%)
Query: 523 AIYHGQAPVVASYSSRGP------DVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDP 576
A+ +G P S + G V L KP++ AP + +GD
Sbjct: 153 AVDYGNTPAFGSDPAPGGTPSSFDPVGIRLPTPEVRQKPDVTAPDG---VNGTVDGDGDG 209
Query: 577 NLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAITSAMMTSAEVTDHSGSPILAQ 636
GTS A PH AGVAAL+ +P +PA I A+ ++A G
Sbjct: 210 ------PPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMGEPG------ 257
Query: 637 DYSDSPILEHVLVHATPFDFGAGFINPARAID 668
G+G ++ RA+
Sbjct: 258 ---------------YDNASGSGLVDADRAVA 274
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functions as a tripeptidyl exopeptidase as well as an endopeptidase. Less is known about PSCP from Pseudomonas which is thought to be an aspartic proteinase. Length = 275 |
| >gnl|CDD|173820 cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 3e-09
Identities = 35/90 (38%), Positives = 46/90 (51%), Gaps = 18/90 (20%)
Query: 533 ASYSSRGPDVNNALLQTADVLKPNIMAPG----SSIWAAWSP-SSEGDPNLKGRNFALLS 587
ASYS+ GP V+ + APG S + P S+ G + G + L
Sbjct: 204 ASYSNYGPAVD-------------VSAPGGDCASDVNGDGYPDSNTGTTSPGGSTYGFLQ 250
Query: 588 GTSMATPHIAGVAALIKQRHPKWSPAAITS 617
GTSMA PH+AGVAAL+K +P +PA I S
Sbjct: 251 GTSMAAPHVAGVAALMKSVNPSLTPAQIES 280
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 285 |
| >gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 9e-09
Identities = 58/216 (26%), Positives = 88/216 (40%), Gaps = 48/216 (22%)
Query: 144 GEGVVIGFIDTGINPEHPSFASHSFRG------NQSISKFKGKCTTGNRFPSTACNSKIV 197
G+GV++G IDTGI+ HP F + +Q+I G + +I+
Sbjct: 3 GKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGP---PPGGYYGGGEYTEEII 59
Query: 198 GAQYFARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMA 257
A A A+ D +RD +GHG+H A AAGN F G+A
Sbjct: 60 NA---ALASDNPYDIVPSRD------ENGHGTHVAGIAAGN---GDNNPDF-----KGVA 102
Query: 258 PGARIAVYKALYTFGGY------------MADVVAAV----DQAVEDGVDI-ISLSVGPS 300
P A + V K L Y D++ A+ D+A+E + I++S+G +
Sbjct: 103 PEAELIVVK-LKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKALELNKPLVINISLGTN 161
Query: 301 AVPSGPAAFLNALEMEL-LFATKAGVLVVQAAGNSG 335
G + LE + + G+ VV AGN G
Sbjct: 162 ---FGSHDGTSLLERYIDAISRLRGIAVVVGAGNEG 194
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455 |
| >gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 1e-08
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 557 IMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAIT 616
+ APG +I++ G + +SGTS A PH++G AAL+ Q+ P + +
Sbjct: 208 LAAPGENIYSTDPDG--------GNGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVR 259
Query: 617 SAMMTSA 623
++T+A
Sbjct: 260 QTLLTTA 266
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267 |
| >gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 1e-08
Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 21/97 (21%)
Query: 544 NALLQTADVLK--------PNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPH 595
AL +T + +I APG I +A + +SGTSMATPH
Sbjct: 194 GALGRTGNFSAVANFSNGEVDIAAPGVDIVSAAPGGG----------YRSMSGTSMATPH 243
Query: 596 IAGVAALIKQRHPK---WSPAAITSAMMTSAEVTDHS 629
+AGVAAL + PK + AA+ A +T+A T +
Sbjct: 244 VAGVAALWAEALPKAGGRALAALLQARLTAARTTQFA 280
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297 |
| >gnl|CDD|173820 cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 3e-08
Identities = 56/210 (26%), Positives = 79/210 (37%), Gaps = 45/210 (21%)
Query: 146 GVVIGFIDTGINPEHPSFASH-----SFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQ 200
GVV+ +DTG+ HP A F + +I+ G+ S +
Sbjct: 1 GVVVAVLDTGVLFHHPDLAGVLLPGYDFISDPAIA------NDGDGRDSDPTDPGDWVTG 54
Query: 201 YFARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYA-SGMAPG 259
G S + HG+H A T A N G +G+A G
Sbjct: 55 DDVPPGGFCGSGVSPSSW--------HGTHVAGTIAAVT---------NNGVGVAGVAWG 97
Query: 260 ARIAVYKALYTFGGYMADVVAAVDQAV---EDGV-------DIISLSVGPSAVPSGPAAF 309
ARI + L GG ++D+V + A GV +I+LS+G + A
Sbjct: 98 ARILPVRVLGKCGGTLSDIVDGMRWAAGLPVPGVPVNPNPAKVINLSLGGDG--ACSATM 155
Query: 310 LNALEMELLFATKAGVLVVQAAGNSGPSSS 339
NA+ GVLVV AAGN G S+S
Sbjct: 156 QNAIND----VRARGVLVVVAAGNEGSSAS 181
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 285 |
| >gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 3e-08
Identities = 34/135 (25%), Positives = 53/135 (39%), Gaps = 43/135 (31%)
Query: 533 ASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMA 592
+S+S GP V+ + APG +I + SP +G A SGTS A
Sbjct: 191 SSFSLPGPWVD-------------LAAPGENIVSL-SPGGDG--------LATTSGTSFA 228
Query: 593 TPHIAGVAALIKQRHPKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHAT 652
P ++G AAL++ R P + A + + +A DH +D
Sbjct: 229 APFVSGTAALVRSRFPDLTAAQVRRRIEATA---DHPARG--GRD--------------- 268
Query: 653 PFDFGAGFINPARAI 667
G G ++P A+
Sbjct: 269 -DYVGYGVVDPVAAL 282
|
Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]. Length = 350 |
| >gnl|CDD|173821 cd07497, Peptidases_S8_14, Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 5e-08
Identities = 60/228 (26%), Positives = 84/228 (36%), Gaps = 47/228 (20%)
Query: 144 GEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFA 203
GEGVVI +DTG++ HP + + +K G
Sbjct: 1 GEGVVIAIVDTGVDYSHPDLDIYGNFSWKLKFDYKAYLLPGMDK---------------- 44
Query: 204 RAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYAS--GMAPGAR 261
Y +D HG+ AS AAG ++ G G+AP A+
Sbjct: 45 ----------WGGFYVIMYDFFSHGTSCASVAAGRGKM-EYNLYGYTGKFLIRGIAPDAK 93
Query: 262 IAVYKALY---TFGGYM----ADVVAAVDQAVEDG---VDIISLSVGPSAVPSGPAAFLN 311
IA KAL+ ++ D V + G VD+IS S G S A
Sbjct: 94 IAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVDVISNSWGISNFAYTGYAP-- 151
Query: 312 ALEMELLF----ATKAGVLVVQAAGNSGPSSSSILSFSPWITSIAASI 355
L++ L T GV +V AAGN GP +I +P S+A S+
Sbjct: 152 GLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTIT--APGAASLAISV 197
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 311 |
| >gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 7e-08
Identities = 58/230 (25%), Positives = 82/230 (35%), Gaps = 68/230 (29%)
Query: 144 GEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFA 203
G GV + IDTG++ HP G P
Sbjct: 12 GAGVTVAVIDTGVDD-HPRLP-------------------GLVLPG-------------- 37
Query: 204 RAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARI- 262
GDF + D D DGHG+ A AG GF SG+AP ARI
Sbjct: 38 ------GDFVGSGDGTD--DCDGHGTLVAGIIAGRPGEG---DGF-----SGVAPDARIL 81
Query: 263 -----------AVYKALYTFGGYMADVVAAVDQAVEDGVDIISLSVGPSAVPSGPAAFLN 311
+ G +A A+ +A + G D+I++S+ + +P+G A
Sbjct: 82 PIRQTSAAFEPDEGTSGVGDLGTLA---KAIRRAADLGADVINISLV-ACLPAGSGADDP 137
Query: 312 ALEMELLFATKAGVLVVQAAGNSGPSSSSILSFSP--WITSIAASITDRK 359
L + +A GV+VV AAGN+G P + +A DR
Sbjct: 138 ELGAAVRYALDKGVVVVAAAGNTGGDGQKTTVVYPAWYPGVLAVGSIDRD 187
|
Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]. Length = 350 |
| >gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 9e-08
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 17/74 (22%)
Query: 532 VASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSM 591
+A +S RGP + +KP+I APG +I A G + SGTS+
Sbjct: 359 IAIFSGRGPTRDG-------RIKPDIAAPGVNILTA----------SPGGGYTTRSGTSV 401
Query: 592 ATPHIAGVAALIKQ 605
A +AG AL+ Q
Sbjct: 402 AAAIVAGACALLLQ 415
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455 |
| >gnl|CDD|173811 cd07485, Peptidases_S8_Fervidolysin_like, Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 1e-06
Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 18/79 (22%)
Query: 532 VASYSSRGPDVNNALLQTADVLKPNIMAPG-SSIWAAWSPSSEGDPNLKGRNFALLSGTS 590
AS+S+ G V+ I APG +I + P +GD G N+ LSGTS
Sbjct: 198 KASFSNYGRWVD-------------IAAPGVGTILSTV-PKLDGD---GGGNYEYLSGTS 240
Query: 591 MATPHIAGVAALIKQRHPK 609
MA PH++GVAAL+ + P
Sbjct: 241 MAAPHVSGVAALVLSKFPD 259
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 273 |
| >gnl|CDD|173796 cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_II, Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 2e-06
Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 24/141 (17%)
Query: 223 DADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFGGYM---ADVV 279
D+ HG+H A AA + +G+APGA+I K T G M +V
Sbjct: 183 DSGAHGTHVAGIAAAHFP--------EEPERNGVAPGAQIVSIKIGDTRLGSMETGTALV 234
Query: 280 AAVDQAVEDGVDIISLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGP--- 336
A+ A+E D+I++S G + + + E + K GV+ V +AGN+GP
Sbjct: 235 RAMIAAIETKCDLINMSYGEATHWPNSGRIIELMN-EAV--NKHGVIFVSSAGNNGPALS 291
Query: 337 -------SSSSILSFSPWITS 350
++SS++ +++
Sbjct: 292 TVGAPGGTTSSVIGVGAYVSP 312
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. Length = 412 |
| >gnl|CDD|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 3e-06
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 14/90 (15%)
Query: 533 ASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMA 592
ASYS+ G V+ ++APG IW + + G + SGTS A
Sbjct: 167 ASYSNYGNYVD-------------LVAPGVGIWTTGTGRGSA-GDYPGGGYGSFSGTSFA 212
Query: 593 TPHIAGVAALIKQRHPKWSPAAITSAMMTS 622
+P AGVAALI +P +PA + + ++
Sbjct: 213 SPVAAGVAALILSANPNLTPAEVEDILTST 242
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 242 |
| >gnl|CDD|173821 cd07497, Peptidases_S8_14, Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 4e-06
Identities = 30/77 (38%), Positives = 36/77 (46%), Gaps = 13/77 (16%)
Query: 532 VASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAA---WSPSSEGDPNLKGRNFALLSG 588
V S+SSRGP + A KP++ A G+ WA D N F L G
Sbjct: 221 VVSWSSRGPSI-------AGDPKPDLAAIGAFAWAPGRVLDSGGALDGNEA---FDLFGG 270
Query: 589 TSMATPHIAGVAALIKQ 605
TSMATP AG AAL+
Sbjct: 271 TSMATPMTAGSAALVIS 287
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 311 |
| >gnl|CDD|173796 cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_II, Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 6e-06
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 19/93 (20%)
Query: 535 YSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATP 594
+SSRGP + AL + I APG +I PN + L++GTSM++P
Sbjct: 332 WSSRGPTADGALGVS-------ISAPGGAI--------ASVPNWTLQGSQLMNGTSMSSP 376
Query: 595 HIAGVAALI----KQRHPKWSPAAITSAMMTSA 623
+ G AL+ K ++P ++ A+ +A
Sbjct: 377 NACGGIALLLSGLKAEGIPYTPYSVRRALENTA 409
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. Length = 412 |
| >gnl|CDD|173797 cd05561, Peptidases_S8_4, Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 7e-06
Identities = 43/197 (21%), Positives = 66/197 (33%), Gaps = 68/197 (34%)
Query: 147 VVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAA 206
V +G IDTGI+ HP+ ++ ++ +FA
Sbjct: 1 VRVGMIDTGIDTAHPALSA-----------------------------VVIARLFFAGPG 31
Query: 207 IAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARI---- 262
HG+ AS AG G+ PGA +
Sbjct: 32 APAPSA--------------HGTAVASLLAGAGAQ-----------RPGLLPGADLYGAD 66
Query: 263 AVYKALYTFGGYMADVVAAVDQAVEDGVDIISLS-VGPSAVPSGPAAFLNALEMELLFAT 321
+A G + A+D E GV ++++S GP P A L A
Sbjct: 67 VFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGP------PNALLAAAVAAAA--- 117
Query: 322 KAGVLVVQAAGNSGPSS 338
G+++V AAGN GP++
Sbjct: 118 ARGMVLVAAAGNDGPAA 134
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 239 |
| >gnl|CDD|173802 cd07476, Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease, Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 9e-06
Identities = 32/116 (27%), Positives = 44/116 (37%), Gaps = 17/116 (14%)
Query: 223 DADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFGGYM--ADVVA 280
A HG+H AS G V G+AP R D+
Sbjct: 48 GASAHGTHVASLIFGQPCSSV----------EGIAPLCRGLNIPIFAEDRRGCSQLDLAR 97
Query: 281 AVDQAVEDGVDIISLSVG-PSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSG 335
A++ A+E G II++S G + NA+ M + VL+V AAGN G
Sbjct: 98 AINLALEQGAHIINISGGRLTQTGEADPILANAVAM----CQQNNVLIVAAAGNEG 149
|
Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Length = 267 |
| >gnl|CDD|173798 cd05562, Peptidases_S53_like, Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 7e-05
Identities = 30/89 (33%), Positives = 37/89 (41%), Gaps = 12/89 (13%)
Query: 256 MAPGARIAVYKALYTFGGYMADVVAAVDQAVEDGVDIISLSVGPSAVP---SGPAAFLNA 312
+APGA +A +T GG D AA+ G DII +G P GP A
Sbjct: 61 IAPGAELA----FHTAGGGELDFAAAIRALAAAGADIIVDDIGYLNEPFFQDGPIA-QAV 115
Query: 313 LEMELLFATKAGVLVVQAAGNSGPSSSSI 341
E+ GVL +AGN G S S
Sbjct: 116 DEV----VASPGVLYFSSAGNDGQSGSIF 140
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functions as a tripeptidyl exopeptidase as well as an endopeptidase. Less is known about PSCP from Pseudomonas which is thought to be an aspartic proteinase. Length = 275 |
| >gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 45.7 bits (107), Expect = 9e-05
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 15/93 (16%)
Query: 532 VASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSM 591
VAS+S+ G +I APG +I S S+ G ++ LSGTSM
Sbjct: 318 VASFSNDGSPT-----------GVDIAAPGVNIL---SLSAVNTLPGDGADYVTLSGTSM 363
Query: 592 ATPHIAGVAALIKQRHP-KWSPAAITSAMMTSA 623
A PH++GVAAL+ +P + +PA + + ++T+A
Sbjct: 364 AAPHVSGVAALVLSANPNELTPAQVRNLIVTTA 396
|
Length = 508 |
| >gnl|CDD|173805 cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 family domain in SKI-1-like proteins | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 9e-05
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 27/103 (26%)
Query: 532 VASYSSRGPDVNNALLQTADV------LKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFAL 585
+A +SSRG + T ++ +KP+I+ GS ++ S G
Sbjct: 166 IARFSSRG-------MTTWELPGGYGRVKPDIVTYGSGVYG--SKLKGG--------CRA 208
Query: 586 LSGTSMATPHIAGVAAL----IKQRHPKWSPAAITSAMMTSAE 624
LSGTS+A+P +AG AL + ++ +PA++ A++ SA
Sbjct: 209 LSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESAT 251
|
SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 255 |
| >gnl|CDD|173797 cd05561, Peptidases_S8_4, Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 4e-04
Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 10/66 (15%)
Query: 559 APGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAITSA 618
APG +W A P R +SGTS A P + AL+ Q P A
Sbjct: 171 APGVDVWVA-------APGGGYR---YVSGTSFAAPFVTAALALLLQASPLAPDDARARL 220
Query: 619 MMTSAE 624
T+ +
Sbjct: 221 AATAKD 226
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 239 |
| >gnl|CDD|203351 pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 4e-04
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 67 ESLLHGHSYTKLYSYTHLLSGFAIHIESEEAVSTLQNAKGVRIIHEDIKME 117
S + LYSY H +GFA + +EE L+ V + D +E
Sbjct: 25 SSKEEAAGASILYSYKHGFNGFAAKL-TEEEAEKLRKHPDVEYVEPDQVVE 74
|
This family includes the proteinase B inhibitor from Saccharomyces cerevisiae and the activation peptides from peptidases of the subtilisin family. The subtilisin propeptides are known to function as molecular chaperones, assisting in the folding of the mature peptidase, but have also been shown to act as 'temporary inhibitors'. Length = 76 |
| >gnl|CDD|173811 cd07485, Peptidases_S8_Fervidolysin_like, Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 7e-04
Identities = 54/226 (23%), Positives = 81/226 (35%), Gaps = 41/226 (18%)
Query: 139 GAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVG 198
G G+++ +DTG++ HP +GN G A N
Sbjct: 4 EFGTGGPGIIVAVVDTGVDGTHPDL-----QGNGDGD--------GYD---PAVNGYNF- 46
Query: 199 AQYFARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAP 258
GD ++ GHG+H A T A + V G A G+AP
Sbjct: 47 -------VPNVGDIDNDVSVG-----GGHGTHVAGTIAAVNNNGGGVGGI--AGAGGVAP 92
Query: 259 GAR---IAVYKALYTFGGYMADVVAAVDQAVEDGVDIISLS----VGPSAVPSGPAAFLN 311
G + I ++ Y G V AA+ A ++G I+ S G P AF
Sbjct: 93 GVKIMSIQIFAGRYYVGDD--AVAAAIVYAADNGAVILQNSWGGTGGGIYSPLLKDAFDY 150
Query: 312 ALEMELLFATKAGVLVVQAAGNSGPSSSSILSFSPWITSIAASITD 357
+E G +VV +AGNS + P + ++AA T+
Sbjct: 151 FIENAGGSPLD-GGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDTN 195
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 273 |
| >gnl|CDD|234383 TIGR03895, protease_PatA, cyanobactin maturation protease, PatA/PatG family | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.001
Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 19/113 (16%)
Query: 227 HGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFGGYMA---DVVAAVD 283
HG+H AS G PV G+AP R + ++ G D+ A++
Sbjct: 1 HGTHVASIIFGQPGSPVP----------GIAPKCR-GLIIPIFFDGARRISQLDLARAIE 49
Query: 284 QAVEDGVDIISLSVG-PSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSG 335
AV G +II++S G + +A+ + + +L+V AAGN G
Sbjct: 50 LAVNAGANIINISAGQLTDTGEAERWLEDAVRL----CQENNILIVAAAGNDG 98
|
This model describes a protease domain associated with the maturation of various members of the cyanobactin family of ribosomally produced, heavily modified bioactive metabolites. Members include the PatA protein and C-terminal domain of the PatG protein of Prochloron didemni, TenA and a region of TenG from Nostoc spongiaeforme var. tenue, etc. Length = 602 |
| >gnl|CDD|173788 cd04056, Peptidases_S53, Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.001
Identities = 30/113 (26%), Positives = 46/113 (40%), Gaps = 18/113 (15%)
Query: 252 YASGMAPGARIAVYKALYTFGGYMADVVAAVDQAVED---GVDIISLSVGPSAVPSGPAA 308
YA +APGA I +Y + G + A AV D +IS+S G S P A
Sbjct: 82 YAGAIAPGANITLY---FAPGTVTNGPLLAFLAAVLDNPNLPSVISISYG-EPEQSLPPA 137
Query: 309 FLNALEMELLFATKAGVLVVQAAGNSGPSSSSI-----------LSFSPWITS 350
+ + A G+ V+ A+G+SG + SP++T+
Sbjct: 138 YAQRVCNLFAQAAAQGITVLAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTA 190
|
Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functions as a tripeptidyl exopeptidase as well as an endopeptidase. Less is known about PSCP from Pseudomonas which is thought to be an aspartic proteinase. Length = 361 |
| >gnl|CDD|173789 cd04059, Peptidases_S8_Protein_convertases_Kexins_Furin-like, Peptidase S8 family domain in Protein convertases | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.001
Identities = 51/236 (21%), Positives = 73/236 (30%), Gaps = 64/236 (27%)
Query: 131 VGVWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPST 190
W G +G+GV + +D G+ HP
Sbjct: 29 TPAW-EQG---ITGKGVTVAVVDDGLEITHPDLK-------------------------- 58
Query: 191 ACNSKIVGAQYFARAAIAYGDFNSTRDYASPF--DADGHGSHTASTAAGNHRVPVIVSGF 248
Y A+ DFN +P D + HG+ A A G
Sbjct: 59 --------DNYDPEASY---DFNDNDPDPTPRYDDDNSHGTRCAGEIAA--------VGN 99
Query: 249 NYGYASGMAPGARIAVYKALYTFGGYMADVVAAVD-QAVEDGVDIISLSVGPSAVPSGPA 307
N G+APGA++ + L G + DVV A D +DI S S GP
Sbjct: 100 NGICGVGVAPGAKLGGIRML---DGDVTDVVEAESLGLNPDYIDIYSNSWGPDDDGKTVD 156
Query: 308 AFLNALEMELLFATKA-----GVLVVQAAGNSG----PSSSSILSFSPWITSIAAS 354
+ L G + V AAGN G + + S + S++A
Sbjct: 157 GPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAV 212
|
Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation. Length = 297 |
| >gnl|CDD|173819 cd07494, Peptidases_S8_10, Peptidase S8 family domain, uncharacterized subfamily 10 | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 560 PGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAITSAM 619
PGS + + + +G P G + + SGTS A P +AGV AL+ Q +P SP S +
Sbjct: 221 PGSQLDRSCAAFPDGTPPNDG--WGVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLL 278
Query: 620 MTSA 623
+A
Sbjct: 279 NKTA 282
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 298 |
| >gnl|CDD|173809 cd07483, Peptidases_S8_Subtilisin_Novo-like, Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 10/68 (14%)
Query: 556 NIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAI 615
++ APG I++ + SGTSMA P ++GVAALI +P + +
Sbjct: 233 DVFAPGERIYSTTP----------DNEYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEV 282
Query: 616 TSAMMTSA 623
++ S
Sbjct: 283 KQIILESG 290
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin.. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 291 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 813 | |||
| cd04852 | 307 | Peptidases_S8_3 Peptidase S8 family domain, unchar | 100.0 | |
| PTZ00262 | 639 | subtilisin-like protease; Provisional | 100.0 | |
| cd07497 | 311 | Peptidases_S8_14 Peptidase S8 family domain, uncha | 100.0 | |
| cd07479 | 255 | Peptidases_S8_SKI-1_like Peptidase S8 family domai | 100.0 | |
| cd07475 | 346 | Peptidases_S8_C5a_Peptidase Peptidase S8 family do | 100.0 | |
| cd05562 | 275 | Peptidases_S53_like Peptidase domain in the S53 fa | 100.0 | |
| cd07489 | 312 | Peptidases_S8_5 Peptidase S8 family domain, unchar | 100.0 | |
| cd07478 | 455 | Peptidases_S8_CspA-like Peptidase S8 family domain | 100.0 | |
| cd07483 | 291 | Peptidases_S8_Subtilisin_Novo-like Peptidase S8 fa | 100.0 | |
| cd07476 | 267 | Peptidases_S8_thiazoline_oxidase_subtilisin-like_p | 100.0 | |
| cd07474 | 295 | Peptidases_S8_subtilisin_Vpr-like Peptidase S8 fam | 100.0 | |
| cd05561 | 239 | Peptidases_S8_4 Peptidase S8 family domain, unchar | 100.0 | |
| cd07493 | 261 | Peptidases_S8_9 Peptidase S8 family domain, unchar | 100.0 | |
| cd07481 | 264 | Peptidases_S8_BacillopeptidaseF-like Peptidase S8 | 100.0 | |
| KOG1153 | 501 | consensus Subtilisin-related protease/Vacuolar pro | 100.0 | |
| cd04857 | 412 | Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptid | 100.0 | |
| cd07487 | 264 | Peptidases_S8_1 Peptidase S8 family domain, unchar | 100.0 | |
| cd07485 | 273 | Peptidases_S8_Fervidolysin_like Peptidase S8 famil | 100.0 | |
| cd04847 | 291 | Peptidases_S8_Subtilisin_like_2 Peptidase S8 famil | 100.0 | |
| cd07494 | 298 | Peptidases_S8_10 Peptidase S8 family domain, uncha | 100.0 | |
| cd07496 | 285 | Peptidases_S8_13 Peptidase S8 family domain, uncha | 100.0 | |
| cd04077 | 255 | Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 | 100.0 | |
| cd07490 | 254 | Peptidases_S8_6 Peptidase S8 family domain, unchar | 100.0 | |
| cd07484 | 260 | Peptidases_S8_Thermitase_like Peptidase S8 family | 100.0 | |
| cd04842 | 293 | Peptidases_S8_Kp43_protease Peptidase S8 family do | 100.0 | |
| cd04843 | 277 | Peptidases_S8_11 Peptidase S8 family domain, uncha | 100.0 | |
| cd07480 | 297 | Peptidases_S8_12 Peptidase S8 family domain, uncha | 100.0 | |
| cd07498 | 242 | Peptidases_S8_15 Peptidase S8 family domain, uncha | 100.0 | |
| cd07473 | 259 | Peptidases_S8_Subtilisin_like Peptidase S8 family | 100.0 | |
| cd07477 | 229 | Peptidases_S8_Subtilisin_subset Peptidase S8 famil | 100.0 | |
| cd07491 | 247 | Peptidases_S8_7 Peptidase S8 family domain, unchar | 100.0 | |
| PF00082 | 282 | Peptidase_S8: Subtilase family This is family S8 i | 100.0 | |
| cd07482 | 294 | Peptidases_S8_Lantibiotic_specific_protease Peptid | 100.0 | |
| cd07492 | 222 | Peptidases_S8_8 Peptidase S8 family domain, unchar | 100.0 | |
| KOG4266 | 1033 | consensus Subtilisin kexin isozyme-1/site 1 protea | 100.0 | |
| cd04059 | 297 | Peptidases_S8_Protein_convertases_Kexins_Furin-lik | 100.0 | |
| cd04848 | 267 | Peptidases_S8_Autotransporter_serine_protease_like | 100.0 | |
| KOG1114 | 1304 | consensus Tripeptidyl peptidase II [Posttranslatio | 100.0 | |
| cd07488 | 247 | Peptidases_S8_2 Peptidase S8 family domain, unchar | 100.0 | |
| cd00306 | 241 | Peptidases_S8_S53 Peptidase domain in the S8 and S | 99.97 | |
| COG1404 | 508 | AprE Subtilisin-like serine proteases [Posttransla | 99.9 | |
| KOG3526 | 629 | consensus Subtilisin-like proprotein convertase [P | 99.85 | |
| cd04056 | 361 | Peptidases_S53 Peptidase domain in the S53 family. | 99.72 | |
| PF06280 | 112 | DUF1034: Fn3-like domain (DUF1034); InterPro: IPR0 | 99.35 | |
| PF05922 | 82 | Inhibitor_I9: Peptidase inhibitor I9; InterPro: IP | 98.73 | |
| cd02133 | 143 | PA_C5a_like PA_C5a_like: Protease-associated domai | 98.63 | |
| cd02120 | 126 | PA_subtilisin_like PA_subtilisin_like: Protease-as | 98.57 | |
| KOG3525 | 431 | consensus Subtilisin-like proprotein convertase [P | 98.46 | |
| COG4934 | 1174 | Predicted protease [Posttranslational modification | 98.26 | |
| cd02129 | 120 | PA_hSPPL_like PA_hSPPL_like: Protease-associated d | 98.09 | |
| PF02225 | 101 | PA: PA domain; InterPro: IPR003137 The PA (Proteas | 98.03 | |
| cd04817 | 139 | PA_VapT_like PA_VapT_like: Protease-associated dom | 98.02 | |
| cd02130 | 122 | PA_ScAPY_like PA_ScAPY_like: Protease-associated d | 97.93 | |
| cd04816 | 122 | PA_SaNapH_like PA_SaNapH_like: Protease-associated | 97.91 | |
| cd02127 | 118 | PA_hPAP21_like PA_hPAP21_like: Protease-associated | 97.78 | |
| cd02122 | 138 | PA_GRAIL_like PA _GRAIL_like: Protease-associated | 97.76 | |
| cd02125 | 127 | PA_VSR PA_VSR: Protease-associated (PA) domain-con | 97.73 | |
| cd02126 | 126 | PA_EDEM3_like PA_EDEM3_like: protease associated d | 97.72 | |
| cd04813 | 117 | PA_1 PA_1: Protease-associated (PA) domain subgrou | 97.72 | |
| cd02124 | 129 | PA_PoS1_like PA_PoS1_like: Protease-associated (PA | 97.69 | |
| cd02132 | 139 | PA_GO-like PA_GO-like: Protease-associated domain | 97.68 | |
| cd02123 | 153 | PA_C_RZF_like PA_C-RZF_ like: Protease-associated | 97.67 | |
| cd04818 | 118 | PA_subtilisin_1 PA_subtilisin_1: Protease-associat | 97.62 | |
| cd00538 | 126 | PA PA: Protease-associated (PA) domain. The PA dom | 97.51 | |
| cd04819 | 127 | PA_2 PA_2: Protease-associated (PA) domain subgrou | 97.48 | |
| PF14874 | 102 | PapD-like: Flagellar-associated PapD-like | 96.78 | |
| PF06030 | 121 | DUF916: Bacterial protein of unknown function (DUF | 96.67 | |
| PF10633 | 78 | NPCBM_assoc: NPCBM-associated, NEW3 domain of alph | 96.59 | |
| PF11614 | 118 | FixG_C: IG-like fold at C-terminal of FixG, putati | 95.77 | |
| cd04815 | 134 | PA_M28_2 PA_M28_2: Protease-associated (PA) domain | 95.55 | |
| cd04814 | 142 | PA_M28_1 PA_M28_1: Protease-associated (PA) domain | 94.8 | |
| cd02128 | 183 | PA_TfR PA_TfR: Protease-associated domain containi | 94.56 | |
| cd04820 | 137 | PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) do | 94.07 | |
| cd04822 | 151 | PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) do | 94.07 | |
| PF07718 | 140 | Coatamer_beta_C: Coatomer beta C-terminal region; | 93.28 | |
| COG1470 | 513 | Predicted membrane protein [Function unknown] | 93.05 | |
| COG1470 | 513 | Predicted membrane protein [Function unknown] | 92.45 | |
| cd02131 | 153 | PA_hNAALADL2_like PA_hNAALADL2_like: Protease-asso | 92.34 | |
| PF05506 | 89 | DUF756: Domain of unknown function (DUF756); Inter | 91.78 | |
| TIGR02745 | 434 | ccoG_rdxA_fixG cytochrome c oxidase accessory prot | 90.82 | |
| cd02121 | 220 | PA_GCPII_like PA_GCPII_like: Protease-associated d | 90.81 | |
| PF00345 | 122 | PapD_N: Pili and flagellar-assembly chaperone, Pap | 89.85 | |
| KOG2442 | 541 | consensus Uncharacterized conserved protein, conta | 88.39 | |
| PF00635 | 109 | Motile_Sperm: MSP (Major sperm protein) domain; In | 84.89 | |
| PF07705 | 101 | CARDB: CARDB; InterPro: IPR011635 The APHP (acidic | 84.24 | |
| smart00635 | 81 | BID_2 Bacterial Ig-like domain 2. | 83.79 | |
| KOG4628 | 348 | consensus Predicted E3 ubiquitin ligase [Posttrans | 82.16 | |
| cd04821 | 157 | PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) do | 81.92 | |
| PF07610 | 45 | DUF1573: Protein of unknown function (DUF1573); In | 80.43 |
| >cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-50 Score=435.89 Aligned_cols=305 Identities=50% Similarity=0.871 Sum_probs=250.5
Q ss_pred ceeccCCCCcccCCCCCCCCC-CCCCCCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCC
Q 044171 116 MEKLTMHTPEFLGIPVGVWPT-LGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNS 194 (813)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~w~~-~~~~~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 194 (813)
+++++++++++++++. .|.. ++..+++|+||+|||||||||++||+|.+..... ....|.+.|..+..+....+|+
T Consensus 1 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 77 (307)
T cd04852 1 YQLHTTRSPDFLGLPG-AWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGP--YPHTWPGDCVTGEDFNPFSCNN 77 (307)
T ss_pred CCccccCCHHHcCCCC-CCCcccccccCCCCccEEEEEeCCCCCCCcCcccCCCCC--CCCCCCCcccCCCCcCccCcCC
Confidence 3577888999999876 8876 5667899999999999999999999999865432 2337889998888877778999
Q ss_pred ceEEEEEchhhhhhcCCCCCCCCCCCCCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-C
Q 044171 195 KIVGAQYFARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-G 273 (813)
Q Consensus 195 ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-~ 273 (813)
|+++.++|.++.......+.......+.|..||||||||||||+...+....|...+.+.||||+|+|+.+|+++..+ +
T Consensus 78 ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~~~ 157 (307)
T cd04852 78 KLIGARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGC 157 (307)
T ss_pred eEEEEEEcccchhhccCcccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCCCCc
Confidence 999999998764433222333445677889999999999999987655555555566788999999999999999844 8
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEccCCCCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCCCCCCCceEEEee
Q 044171 274 YMADVVAAVDQAVEDGVDIISLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSSSILSFSPWITSIAA 353 (813)
Q Consensus 274 ~~~~i~~ai~~a~~~g~~VIn~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~vitVgA 353 (813)
..+++++||++|++++++|||||||.... ..+.+.+..++..+.++|++||+||||+|......++..|++++|||
T Consensus 158 ~~~~~~~ai~~a~~~g~~Vin~S~G~~~~----~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vga 233 (307)
T cd04852 158 FGSDILAAIDQAIADGVDVISYSIGGGSP----DPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAA 233 (307)
T ss_pred cHHHHHHHHHHHHHcCCCEEEeCCCCCCC----CcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEEe
Confidence 88899999999999999999999998653 12346778888889999999999999999877777888888998887
Q ss_pred cccCccccceeeecCCcEEEeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccC
Q 044171 354 SITDRKYNNTIKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFD 433 (813)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~ 433 (813)
++
T Consensus 234 ~~------------------------------------------------------------------------------ 235 (307)
T cd04852 234 ST------------------------------------------------------------------------------ 235 (307)
T ss_pred cc------------------------------------------------------------------------------
Confidence 21
Q ss_pred CCCCchhHHHHHHHHHhcCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeee
Q 044171 434 FENDDATIATVADNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHA 513 (813)
Q Consensus 434 ~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~ 513 (813)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEccCeeeeecCCCCeeeecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChh
Q 044171 514 RARILDGRRAIYHGQAPVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMAT 593 (813)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAa 593 (813)
+||||+|||.+|++++..............|..++||||||
T Consensus 236 ---------------------------------------~~~di~apG~~i~~~~~~~~~~~~~~~~~~~~~~sGTS~Aa 276 (307)
T cd04852 236 ---------------------------------------LKPDIAAPGVDILAAWTPEGADPGDARGEDFAFISGTSMAS 276 (307)
T ss_pred ---------------------------------------CccceeeccCceeecccCccccccCCCCCcEEEeCcHHHHH
Confidence 35699999999999986432222222346899999999999
Q ss_pred hHHHHHHHHHHHhCCCCCHHHHHHHHHcccc
Q 044171 594 PHIAGVAALIKQRHPKWSPAAITSAMMTSAE 624 (813)
Q Consensus 594 P~VAG~aALl~q~~p~~s~~~ik~~L~~TA~ 624 (813)
|+|||++|||+|++|+|+|.+||++|++||+
T Consensus 277 P~vaG~aALl~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 277 PHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 9999999999999999999999999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >PTZ00262 subtilisin-like protease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-50 Score=450.10 Aligned_cols=289 Identities=19% Similarity=0.282 Sum_probs=210.1
Q ss_pred CCCCCCCCCCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCce--EEEEEchhhhhhcC
Q 044171 133 VWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKI--VGAQYFARAAIAYG 210 (813)
Q Consensus 133 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki--~g~~~~~~~~~~~~ 210 (813)
+|... .+.+|+||+|||||||||++||||.++.+.....+. |.++.....|+.+ +.+++|+++
T Consensus 306 aw~~~--~~~~g~gV~VAVIDTGID~~HPDL~~ni~~n~~el~--------GrdgiDdD~nG~vdd~~G~nfVd~----- 370 (639)
T PTZ00262 306 TQELI--EPHEVNDTNICVIDSGIDYNHPDLHDNIDVNVKELH--------GRKGIDDDNNGNVDDEYGANFVNN----- 370 (639)
T ss_pred HHHHh--hccCCCCcEEEEEccCCCCCChhhhhhccccccccc--------CccccccccCCcccccccccccCC-----
Confidence 55532 246899999999999999999999986432111110 1111111111111 234455432
Q ss_pred CCCCCCCCCCCCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-CCHHHHHHHHHHHHhCC
Q 044171 211 DFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-GYMADVVAAVDQAVEDG 289 (813)
Q Consensus 211 ~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g 289 (813)
...|.|++||||||||||||..+++ .++.||||+|+|+++|+++..+ +..+++++||+||++.|
T Consensus 371 -------~~~P~D~~GHGTHVAGIIAA~gnN~--------~Gi~GVAP~AkLi~vKVld~~G~G~~sdI~~AI~yA~~~G 435 (639)
T PTZ00262 371 -------DGGPMDDNYHGTHVSGIISAIGNNN--------IGIVGVDKRSKLIICKALDSHKLGRLGDMFKCFDYCISRE 435 (639)
T ss_pred -------CCCCCCCCCcchHHHHHHhccccCC--------CceeeeecccccceEEEecCCCCccHHHHHHHHHHHHHCC
Confidence 2456789999999999999975321 3468999999999999999877 88999999999999999
Q ss_pred CcEEEEccCCCCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCCC--------------CCC----CCCceEEE
Q 044171 290 VDIISLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSSS--------------ILS----FSPWITSI 351 (813)
Q Consensus 290 ~~VIn~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~--------------~~~----~~~~vitV 351 (813)
++|||||||+.. +...+..|+.+|.++|++||+||||+|..... +|+ ..++||+|
T Consensus 436 A~VINmSlG~~~-------~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~nVIaV 508 (639)
T PTZ00262 436 AHMINGSFSFDE-------YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLRNVITV 508 (639)
T ss_pred CCEEEeccccCC-------ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCCCEEEE
Confidence 999999999643 23568889999999999999999999864321 221 23566666
Q ss_pred eecccCccccceeeecCCcEEEeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeec
Q 044171 352 AASITDRKYNNTIKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYS 431 (813)
Q Consensus 352 gA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~ 431 (813)
||++.+..
T Consensus 509 GAv~~d~~------------------------------------------------------------------------ 516 (639)
T PTZ00262 509 SNLIKDKN------------------------------------------------------------------------ 516 (639)
T ss_pred eeccCCCC------------------------------------------------------------------------
Confidence 66421100
Q ss_pred cCCCCCchhHHHHHHHHHhcCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeee
Q 044171 432 FDFENDDATIATVADNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVF 511 (813)
Q Consensus 432 ~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~ 511 (813)
T Consensus 517 -------------------------------------------------------------------------------- 516 (639)
T PTZ00262 517 -------------------------------------------------------------------------------- 516 (639)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeEEEccCeeeeecCCCCeeeecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCC
Q 044171 512 HARARILDGRRAIYHGQAPVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSM 591 (813)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSM 591 (813)
..-.++.||++|. .++||+|||++|+|+.+ ++.|..++||||
T Consensus 517 ----------------~~~s~s~~Snyg~------------~~VDIaAPG~dI~St~p----------~g~Y~~~SGTSm 558 (639)
T PTZ00262 517 ----------------NQYSLSPNSFYSA------------KYCQLAAPGTNIYSTFP----------KNSYRKLNGTSM 558 (639)
T ss_pred ----------------CcccccccccCCC------------CcceEEeCCCCeeeccC----------CCceeecCCCch
Confidence 0001345566652 23499999999999984 458999999999
Q ss_pred hhhHHHHHHHHHHHhCCCCCHHHHHHHHHccccccCCCCCcccccCCCCCccccccccCCCCCccC-ccccCccCcCCCC
Q 044171 592 ATPHIAGVAALIKQRHPKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFG-AGFINPARAIDPG 670 (813)
Q Consensus 592 AaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G-aG~vd~~~A~~~~ 670 (813)
|||||||+||||++++|+|++.+|+++|++||.+++.... .+| +|+||+++|++..
T Consensus 559 AAP~VAGvAALLlS~~P~LT~~qV~~iL~~TA~~l~~~~n-----------------------~~~wgG~LDa~kAV~~A 615 (639)
T PTZ00262 559 AAPHVAAIASLILSINPSLSYEEVIRILKESIVQLPSLKN-----------------------KVKWGGYLDIHHAVNLA 615 (639)
T ss_pred hHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCccCCCCCC-----------------------ccccCcEEcHHHHHHHH
Confidence 9999999999999999999999999999999987632111 233 3899999999865
Q ss_pred e
Q 044171 671 L 671 (813)
Q Consensus 671 l 671 (813)
+
T Consensus 616 i 616 (639)
T PTZ00262 616 I 616 (639)
T ss_pred H
Confidence 4
|
|
| >cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-48 Score=414.19 Aligned_cols=290 Identities=30% Similarity=0.356 Sum_probs=189.6
Q ss_pred CCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCCCCCCCCCCCCC
Q 044171 144 GEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYASPFD 223 (813)
Q Consensus 144 G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d 223 (813)
|+||+|||||||||.+||||.++... .|...+ .+.+++..+.++..+ ....+.|
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~~------~~~~~~---------d~~~~~~~g~d~~~~-----------~~~~~~D 54 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGNF------SWKLKF---------DYKAYLLPGMDKWGG-----------FYVIMYD 54 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccCC------Cccccc---------CcCCCccCCcCCCCC-----------ccCCCCC
Confidence 89999999999999999999764310 010000 001112222222211 1134678
Q ss_pred CCCCccccccccccCCCccceeccc-ccccccccccCccEEEEEEeeCCC-CCHHHHHH-------HHHHHH--hCCCcE
Q 044171 224 ADGHGSHTASTAAGNHRVPVIVSGF-NYGYASGMAPGARIAVYKALYTFG-GYMADVVA-------AVDQAV--EDGVDI 292 (813)
Q Consensus 224 ~~gHGThVAGiiag~~~~~~~~~g~-~~~~~~GvAp~A~l~~~kv~~~~g-~~~~~i~~-------ai~~a~--~~g~~V 292 (813)
++||||||||||||.........++ ....+.||||+|+|+.+|++...+ .....+.. +++|+. +++++|
T Consensus 55 ~~gHGThvAGiiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~V 134 (311)
T cd07497 55 FFSHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVDV 134 (311)
T ss_pred ccccchhHHHHHhccCcccccccccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCCCceE
Confidence 9999999999999985321110000 113578999999999999997543 32222222 444443 679999
Q ss_pred EEEccCCCCCCC-CChhhhhHHHHHHHHH-HhCCcEEEEecCCCCCCCC--CCCCCCCceEEEeecccCccccceeeecC
Q 044171 293 ISLSVGPSAVPS-GPAAFLNALEMELLFA-TKAGVLVVQAAGNSGPSSS--SILSFSPWITSIAASITDRKYNNTIKLAN 368 (813)
Q Consensus 293 In~S~G~~~~~~-~~~~~~~~~~~a~~~a-~~~Gi~vV~AAGN~g~~~~--~~~~~~~~vitVgA~~~~~~~~~~~~~~~ 368 (813)
||||||...... .+..-.+..+.+++.+ .++|+++|+||||+|.... ..|+.++++|+|||++.....+... +
T Consensus 135 IN~S~G~~~~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~~~-~-- 211 (311)
T cd07497 135 ISNSWGISNFAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPFYL-F-- 211 (311)
T ss_pred EEecCCcCCCCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccchhh-h--
Confidence 999999754221 1100112222233322 3899999999999997543 4567889999999975321100000 0
Q ss_pred CcEEEeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHH
Q 044171 369 GHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNI 448 (813)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~ 448 (813)
.
T Consensus 212 ---------------------------------------~---------------------------------------- 212 (311)
T cd07497 212 ---------------------------------------G---------------------------------------- 212 (311)
T ss_pred ---------------------------------------c----------------------------------------
Confidence 0
Q ss_pred HhcCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeeeeecCC
Q 044171 449 KKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQ 528 (813)
Q Consensus 449 ~~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 528 (813)
. ....
T Consensus 213 -----------~----------------------------------------------------------------~~~~ 217 (311)
T cd07497 213 -----------Y----------------------------------------------------------------LPGG 217 (311)
T ss_pred -----------c----------------------------------------------------------------ccCC
Confidence 0 0011
Q ss_pred CCeeeecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHHHHHHHhCC
Q 044171 529 APVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHP 608 (813)
Q Consensus 529 ~~~~s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p 608 (813)
.+.++.||||||+.+ +++||||+|||++|+++.+.............|..++|||||||||||++|||+|++|
T Consensus 218 ~~~~~~fSs~Gp~~~-------g~~kPdv~ApG~~i~s~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~ 290 (311)
T cd07497 218 SGDVVSWSSRGPSIA-------GDPKPDLAAIGAFAWAPGRVLDSGGALDGNEAFDLFGGTSMATPMTAGSAALVISALK 290 (311)
T ss_pred CCCccccccCCCCcc-------cCCCCceeccCcceEeecccCCCCcccCCCcceeeecchhhhhHHHHHHHHHHHHHhh
Confidence 245899999999987 7999999999999999876432211111234799999999999999999999999886
Q ss_pred ------CCCHHHHHHHHHccc
Q 044171 609 ------KWSPAAITSAMMTSA 623 (813)
Q Consensus 609 ------~~s~~~ik~~L~~TA 623 (813)
.++|++||++|++||
T Consensus 291 ~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 291 EKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred hhcCCCCCCHHHHHHHHHhcC
Confidence 589999999999997
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-48 Score=405.14 Aligned_cols=244 Identities=26% Similarity=0.381 Sum_probs=194.2
Q ss_pred CCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCCCCCCCCCC
Q 044171 141 EFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYAS 220 (813)
Q Consensus 141 ~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~ 220 (813)
+++|+||+|||||||||.+||+|.+... ..+|.. ...
T Consensus 4 g~tG~gv~VaviDsGv~~~hp~l~~~~~------------------------------~~~~~~-------------~~~ 40 (255)
T cd07479 4 GYTGAGVKVAVFDTGLAKDHPHFRNVKE------------------------------RTNWTN-------------EKT 40 (255)
T ss_pred CCCCCCCEEEEEeCCCCCCCcchhcccc------------------------------ccccCC-------------CCC
Confidence 8999999999999999999999985310 001110 123
Q ss_pred CCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-CCHHHHHHHHHHHHhCCCcEEEEccCC
Q 044171 221 PFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-GYMADVVAAVDQAVEDGVDIISLSVGP 299 (813)
Q Consensus 221 ~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~~VIn~S~G~ 299 (813)
..|+.||||||||||+|+.. ...||||+|+|+.+|++.+.+ +..++++++++||++++++|||||||.
T Consensus 41 ~~d~~gHGT~VAGiIa~~~~-----------~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~a~~~a~~~~~~Vin~S~G~ 109 (255)
T cd07479 41 LDDGLGHGTFVAGVIASSRE-----------QCLGFAPDAEIYIFRVFTNNQVSYTSWFLDAFNYAILTKIDVLNLSIGG 109 (255)
T ss_pred CCCCCCcHHHHHHHHHccCC-----------CceeECCCCEEEEEEeecCCCCchHHHHHHHHHhhhhcCCCEEEeeccC
Confidence 45778999999999999742 257999999999999998876 677889999999999999999999997
Q ss_pred CCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCC--CCCCCCCceEEEeecccCccccceeeecCCcEEEeeec
Q 044171 300 SAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSS--SILSFSPWITSIAASITDRKYNNTIKLANGHSFSGIGL 377 (813)
Q Consensus 300 ~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~--~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~ 377 (813)
... ....+.+++.++.++|++||+||||+|+... ..|+..+++|+|||++.+
T Consensus 110 ~~~------~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~~-------------------- 163 (255)
T cd07479 110 PDF------MDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDFD-------------------- 163 (255)
T ss_pred CCC------CCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeeccC--------------------
Confidence 532 1234566677888999999999999997543 356778899999984311
Q ss_pred CCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEE
Q 044171 378 APPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFI 457 (813)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i 457 (813)
T Consensus 164 -------------------------------------------------------------------------------- 163 (255)
T cd07479 164 -------------------------------------------------------------------------------- 163 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeeeeecCCCCeeeeccc
Q 044171 458 LRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPVVASYSS 537 (813)
Q Consensus 458 ~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~s~FSS 537 (813)
+.++.|||
T Consensus 164 ------------------------------------------------------------------------~~~~~~S~ 171 (255)
T cd07479 164 ------------------------------------------------------------------------DNIARFSS 171 (255)
T ss_pred ------------------------------------------------------------------------CccccccC
Confidence 23678899
Q ss_pred CCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHHHHHHHhCC----CCCHH
Q 044171 538 RGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHP----KWSPA 613 (813)
Q Consensus 538 ~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p----~~s~~ 613 (813)
+|++... .+...|++||||+|||.+|+++.. ++.|..++|||||||||||++|||+|++| .++|.
T Consensus 172 ~g~~~~~-~p~~~g~~~~di~apG~~i~~~~~----------~~~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~ 240 (255)
T cd07479 172 RGMTTWE-LPGGYGRVKPDIVTYGSGVYGSKL----------KGGCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPA 240 (255)
T ss_pred CCCCccc-ccCCCCCcCccEEecCCCeecccc----------CCCeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHH
Confidence 9965311 011127899999999999998763 34789999999999999999999999999 78999
Q ss_pred HHHHHHHccccccC
Q 044171 614 AITSAMMTSAEVTD 627 (813)
Q Consensus 614 ~ik~~L~~TA~~~~ 627 (813)
+||++|++||+++.
T Consensus 241 ~vk~~L~~sA~~~~ 254 (255)
T cd07479 241 SMKQALIESATRLP 254 (255)
T ss_pred HHHHHHHhhcccCC
Confidence 99999999998763
|
SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem |
| >cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-47 Score=418.74 Aligned_cols=314 Identities=31% Similarity=0.437 Sum_probs=231.2
Q ss_pred CCCCCCCCCCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCccccccccc----ccCCCCCCCCCCCceEEEEEchhhhhh
Q 044171 133 VWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKC----TTGNRFPSTACNSKIVGAQYFARAAIA 208 (813)
Q Consensus 133 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~n~ki~g~~~~~~~~~~ 208 (813)
+|+.. .++|+||+|||||||||++||+|.+...... .|++.+ .........+.+.+++++++|.+..
T Consensus 2 ~w~~~---~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 72 (346)
T cd07475 2 LWDKG---GYKGEGMVVAVIDSGVDPTHDAFRLDDDSKA----KYSEEFEAKKKKAGIGYGKYYNEKVPFAYNYADNN-- 72 (346)
T ss_pred hhhhc---CCCCCCcEEEEEeCCCCCCChhHccCCCccc----ccchhhhhhhhcccCCCCcccccCCCeeEcCCCCC--
Confidence 57662 2489999999999999999999998653221 111001 0111222346778999999998651
Q ss_pred cCCCCCCCCCCCCCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeC--CC-CCHHHHHHHHHHH
Q 044171 209 YGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYT--FG-GYMADVVAAVDQA 285 (813)
Q Consensus 209 ~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~--~g-~~~~~i~~ai~~a 285 (813)
.+.....|..+|||||||||+|...... ....+.||||+|+|+.+|+++. .+ .....+++|++++
T Consensus 73 -------~~~~~~~~~~~HGT~vagiiag~~~~~~-----~~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a 140 (346)
T cd07475 73 -------DDILDEDDGSSHGMHVAGIVAGNGDEED-----NGEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDA 140 (346)
T ss_pred -------CccCCCCCCCCcHHHHHHHHhcCCCccc-----cCCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHH
Confidence 1111144788999999999999864211 1235789999999999999974 33 6778899999999
Q ss_pred HhCCCcEEEEccCCCCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCC----------------CCCCCceE
Q 044171 286 VEDGVDIISLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSSSI----------------LSFSPWIT 349 (813)
Q Consensus 286 ~~~g~~VIn~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~----------------~~~~~~vi 349 (813)
++.|++|||||||...... .....+..+++++.++|++||+||||+|...... +...+++|
T Consensus 141 ~~~g~~Vin~S~G~~~~~~---~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i 217 (346)
T cd07475 141 VKLGADVINMSLGSTAGFV---DLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVL 217 (346)
T ss_pred HHcCCCEEEECCCcCCCCC---CCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCce
Confidence 9999999999999865432 2446778888999999999999999998654221 12234444
Q ss_pred EEeecccCccccceeeecCCcEEEeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEe
Q 044171 350 SIAASITDRKYNNTIKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICT 429 (813)
Q Consensus 350 tVgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~ 429 (813)
+||+++..
T Consensus 218 ~Vga~~~~------------------------------------------------------------------------ 225 (346)
T cd07475 218 TVASANKK------------------------------------------------------------------------ 225 (346)
T ss_pred EEeecccc------------------------------------------------------------------------
Confidence 44442100
Q ss_pred eccCCCCCchhHHHHHHHHHhcCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCcee
Q 044171 430 YSFDFENDDATIATVADNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAV 509 (813)
Q Consensus 430 ~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v 509 (813)
T Consensus 226 -------------------------------------------------------------------------------- 225 (346)
T cd07475 226 -------------------------------------------------------------------------------- 225 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeeEEEccCeeeeecCCCCeeeecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeecc
Q 044171 510 VFHARARILDGRRAIYHGQAPVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGT 589 (813)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGT 589 (813)
......+.++.||+|||+.. +++||||+|||.+|+++.. ++.|..++||
T Consensus 226 --------------~~~~~~~~~~~~S~~G~~~~-------~~~~pdi~apG~~i~s~~~----------~~~~~~~~GT 274 (346)
T cd07475 226 --------------VPNPNGGQMSGFSSWGPTPD-------LDLKPDITAPGGNIYSTVN----------DNTYGYMSGT 274 (346)
T ss_pred --------------cCCCCCCccCCCcCCCCCcc-------cCcCCeEEeCCCCeEEecC----------CCceEeeCcH
Confidence 00112245789999999986 6999999999999999873 3589999999
Q ss_pred CChhhHHHHHHHHHHHh----CCCCCHHH----HHHHHHccccccCCCCCcccccCCCCCccccccccCCCCCccCcccc
Q 044171 590 SMATPHIAGVAALIKQR----HPKWSPAA----ITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGFI 661 (813)
Q Consensus 590 SMAaP~VAG~aALl~q~----~p~~s~~~----ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaG~v 661 (813)
|||||+|||++|||+|+ +|.|++.+ ||++|++||.+...... ....+.++++|+|+|
T Consensus 275 S~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ik~~l~~ta~~~~~~~~---------------~~~~~~~~~~G~G~v 339 (346)
T cd07475 275 SMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTATPPLDSED---------------TKTYYSPRRQGAGLI 339 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCcccccCC---------------CCccCCccccCcchh
Confidence 99999999999999997 78888876 78899999985321111 244567789999999
Q ss_pred CccCcCC
Q 044171 662 NPARAID 668 (813)
Q Consensus 662 d~~~A~~ 668 (813)
|+.+|++
T Consensus 340 n~~~Av~ 346 (346)
T cd07475 340 DVAKAIA 346 (346)
T ss_pred cHHHhhC
Confidence 9999985
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr |
| >cd05562 Peptidases_S53_like Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-47 Score=403.34 Aligned_cols=271 Identities=24% Similarity=0.264 Sum_probs=200.4
Q ss_pred CCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCCCCCCCCCC
Q 044171 141 EFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYAS 220 (813)
Q Consensus 141 ~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~ 220 (813)
|++|+||+|||||||||.+||++.+.... ++.+...+.. ....
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~-------------------------~l~~~~~~~~------------~~~~ 43 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQASG-------------------------DLPGNVNVLG------------DLDG 43 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccCC-------------------------CCCcceeecc------------ccCC
Confidence 57999999999999999998855432110 0111111100 0123
Q ss_pred CCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCCCCHHHHHHHHHHHHhCCCcEEEEccCCC
Q 044171 221 PFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFGGYMADVVAAVDQAVEDGVDIISLSVGPS 300 (813)
Q Consensus 221 ~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~~VIn~S~G~~ 300 (813)
..|.++|||||||||+ ||||+|+|+.+|+. ...+++++||+|++++|++|||||||..
T Consensus 44 ~~d~~gHGT~vAgii~------------------GvAP~a~l~~~~~~----~~~~~i~~ai~~a~~~g~~Vin~S~g~~ 101 (275)
T cd05562 44 GSGGGDEGRAMLEIIH------------------DIAPGAELAFHTAG----GGELDFAAAIRALAAAGADIIVDDIGYL 101 (275)
T ss_pred CCCCCchHHHHHHHHh------------------ccCCCCEEEEEecC----CCHHHHHHHHHHHHHcCCCEEEeccccc
Confidence 4578899999999973 79999999998874 3478899999999999999999999975
Q ss_pred CCCCCChhhhhHHHHHHHHHHhC-CcEEEEecCCCCCCC-CCCCCCCCceEEEeecccCccccceeeecCCcEEEeeecC
Q 044171 301 AVPSGPAAFLNALEMELLFATKA-GVLVVQAAGNSGPSS-SSILSFSPWITSIAASITDRKYNNTIKLANGHSFSGIGLA 378 (813)
Q Consensus 301 ~~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~-~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (813)
..+. .....+..+++++.++ |++||+||||+|... ...|+..+++|+|||++.+.....+
T Consensus 102 ~~~~---~~~~~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~--------------- 163 (275)
T cd05562 102 NEPF---FQDGPIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFG--------------- 163 (275)
T ss_pred CCCc---ccCCHHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCcccc---------------
Confidence 4321 1124577788888887 999999999999854 3457889999999997643221000
Q ss_pred CCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEEE
Q 044171 379 PPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFIL 458 (813)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~ 458 (813)
.|.
T Consensus 164 ------------------------------s~~----------------------------------------------- 166 (275)
T cd05562 164 ------------------------------SDP----------------------------------------------- 166 (275)
T ss_pred ------------------------------ccc-----------------------------------------------
Confidence 000
Q ss_pred EeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeeeeecCCCCeeeecccC
Q 044171 459 RMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPVVASYSSR 538 (813)
Q Consensus 459 ~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~s~FSS~ 538 (813)
. . .......+.||++
T Consensus 167 ----~---~----------------------------------------------------------~~~~s~~~~~~~~ 181 (275)
T cd05562 167 ----A---P----------------------------------------------------------GGTPSSFDPVGIR 181 (275)
T ss_pred ----c---c----------------------------------------------------------CCCcccccCCccc
Confidence 0 0 0000124667889
Q ss_pred CCCcCcccccCCCCCCCceecCCCc-EEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHHHHHHHhCCCCCHHHHHH
Q 044171 539 GPDVNNALLQTADVLKPNIMAPGSS-IWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAITS 617 (813)
Q Consensus 539 Gp~~~~~~~~~~g~~KPDI~APG~~-I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~s~~~ik~ 617 (813)
||+.+ +++||||+|||+. +.++. .++.|..++|||||||||||++|||+|++|+|++++||+
T Consensus 182 ~p~~~-------~~~~~di~Apgg~~~~~~~----------~~~~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~ 244 (275)
T cd05562 182 LPTPE-------VRQKPDVTAPDGVNGTVDG----------DGDGPPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRD 244 (275)
T ss_pred CcCCC-------CCcCCeEEcCCcccccCCC----------cCCceeecccchHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 99876 6899999999764 44443 345899999999999999999999999999999999999
Q ss_pred HHHccccccCCCCCcccccCCCCCccccccccCCCCCccCccccCccCcCC
Q 044171 618 AMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGFINPARAID 668 (813)
Q Consensus 618 ~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaG~vd~~~A~~ 668 (813)
+|++||+++... ..+..||||+||+.+|++
T Consensus 245 ~L~~tA~~~~~~---------------------g~d~~~G~G~vda~~Av~ 274 (275)
T cd05562 245 ALRSTALDMGEP---------------------GYDNASGSGLVDADRAVA 274 (275)
T ss_pred HHHHhCcccCCC---------------------CCCCCcCcCcccHHHHhh
Confidence 999999876422 234589999999999986
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi |
| >cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-46 Score=406.66 Aligned_cols=296 Identities=31% Similarity=0.426 Sum_probs=227.3
Q ss_pred CCCCCCCCCCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCC
Q 044171 133 VWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDF 212 (813)
Q Consensus 133 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~ 212 (813)
+|+. +++|+||+|||||+|||++||+|.++.... .++.+.++|..+... ..
T Consensus 5 ~~~~----g~tG~gv~VaViDsGid~~hp~l~~~~~~~-----------------------~~~~~~~d~~~~~~~--~~ 55 (312)
T cd07489 5 LHAE----GITGKGVKVAVVDTGIDYTHPALGGCFGPG-----------------------CKVAGGYDFVGDDYD--GT 55 (312)
T ss_pred HHhC----CCCCCCCEEEEEECCCCCCChhhhcCCCCC-----------------------ceeccccccCCcccc--cc
Confidence 5555 899999999999999999999999753211 123333333322100 01
Q ss_pred CCCCCCCCCCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-CCHHHHHHHHHHHHhCCCc
Q 044171 213 NSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-GYMADVVAAVDQAVEDGVD 291 (813)
Q Consensus 213 ~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~~ 291 (813)
+...+...+.|.++|||||||||++...+ ..+.||||+|+|+.+|+++..+ ...+.++++++++++++++
T Consensus 56 ~~~~~~~~~~d~~gHGT~vAgiia~~~~~---------~~~~GiAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~ 126 (312)
T cd07489 56 NPPVPDDDPMDCQGHGTHVAGIIAANPNA---------YGFTGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYEDGAD 126 (312)
T ss_pred cCCCCCCCCCCCCCcHHHHHHHHhcCCCC---------CceEEECCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCC
Confidence 11223345667899999999999998542 2468999999999999998766 6677789999999999999
Q ss_pred EEEEccCCCCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCC---CCCCCCCceEEEeecccCccccceeeecC
Q 044171 292 IISLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSS---SILSFSPWITSIAASITDRKYNNTIKLAN 368 (813)
Q Consensus 292 VIn~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~---~~~~~~~~vitVgA~~~~~~~~~~~~~~~ 368 (813)
|||||||...... ...+..+++++.++|+++|+||||+|.... ..++..+++|+||+++
T Consensus 127 iIn~S~g~~~~~~-----~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~------------- 188 (312)
T cd07489 127 VITASLGGPSGWS-----EDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD------------- 188 (312)
T ss_pred EEEeCCCcCCCCC-----CCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec-------------
Confidence 9999999765332 256677778888999999999999987532 3355667788887621
Q ss_pred CcEEEeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHH
Q 044171 369 GHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNI 448 (813)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~ 448 (813)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeeeeecCC
Q 044171 449 KKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQ 528 (813)
Q Consensus 449 ~~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 528 (813)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCeeeecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHHHHHHHhC-
Q 044171 529 APVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRH- 607 (813)
Q Consensus 529 ~~~~s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~- 607 (813)
+.||+|||+.+ ...||||+|||++++++++.. .+.|..++|||||||+|||++|||+|++
T Consensus 189 ----~~~s~~g~~~~-------~~~kpdv~ApG~~i~~~~~~~--------~~~~~~~~GTS~Aap~vaG~~Al~~~~~~ 249 (312)
T cd07489 189 ----SYFSSWGPTNE-------LYLKPDVAAPGGNILSTYPLA--------GGGYAVLSGTSMATPYVAGAAALLIQARH 249 (312)
T ss_pred ----CCccCCCCCCC-------CCcCccEEcCCCCEEEeeeCC--------CCceEeeccHHHHHHHHHHHHHHHHHhcC
Confidence 45688999986 589999999999999988642 2369999999999999999999999999
Q ss_pred CCCCHHHHHHHHHccccccCCCCCcccccCCCCCccccccccCCCCCccCccccCccCcCCCCeeeec
Q 044171 608 PKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGFINPARAIDPGLIFNA 675 (813)
Q Consensus 608 p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaG~vd~~~A~~~~lv~~~ 675 (813)
|.+++.+||++|++||.++...+..- . ...+++..++|||+||+.+|++..-.+++
T Consensus 250 ~~~~~~~v~~~l~~ta~~~~~~~~~~---~---------~~~~~~~~~~G~G~vn~~~a~~~~~~~~~ 305 (312)
T cd07489 250 GKLSPAELRDLLASTAKPLPWSDGTS---A---------LPDLAPVAQQGAGLVNAYKALYATTTLSP 305 (312)
T ss_pred CCCCHHHHHHHHHHhCccccccCCCc---c---------ccCCCCHhhcCcceeeHHHHhcCCccccc
Confidence 99999999999999999875433200 0 11246667899999999999997655443
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-46 Score=418.94 Aligned_cols=422 Identities=23% Similarity=0.224 Sum_probs=226.9
Q ss_pred CCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhh-hhhcCCCCCCCCCCC
Q 044171 142 FSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARA-AIAYGDFNSTRDYAS 220 (813)
Q Consensus 142 ~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~-~~~~~~~~~~~~~~~ 220 (813)
++|+||+|||||||||+.||+|.+.+.. .+....|++....+... ....++..+.++ ...........+...
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~-tRi~~~wDq~~~~~~~~------~~~~~~~~~~~~~i~~~~~~~~p~~~~~ 73 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGT-TRILYIWDQTIPGGPPP------GGYYGGGEYTEEIINAALASDNPYDIVP 73 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCC-chhHHhhhCcCCCCCCC------ccccCceEEeHHHHHHHHhcCCccccCc
Confidence 4899999999999999999999975432 23344787766543221 112222222221 000000111122244
Q ss_pred CCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-----------CCHHHHHHHHHHHHhC-
Q 044171 221 PFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-----------GYMADVVAAVDQAVED- 288 (813)
Q Consensus 221 ~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-----------~~~~~i~~ai~~a~~~- 288 (813)
..|++||||||||||||+... ...+.||||+|+|+++|++...+ +..+++++||+|+++.
T Consensus 74 ~~D~~GHGThvAGIiag~~~~--------~~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a 145 (455)
T cd07478 74 SRDENGHGTHVAGIAAGNGDN--------NPDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKA 145 (455)
T ss_pred CCCCCCchHHHHHHHhcCCCC--------CCCccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHHH
Confidence 568999999999999998542 23578999999999999998764 4578999999999874
Q ss_pred ----CCcEEEEccCCCCCCCCChhhhhHHHHHHHHHHhC-CcEEEEecCCCCCCCCCCCCC-----CCce--EEEeeccc
Q 044171 289 ----GVDIISLSVGPSAVPSGPAAFLNALEMELLFATKA-GVLVVQAAGNSGPSSSSILSF-----SPWI--TSIAASIT 356 (813)
Q Consensus 289 ----g~~VIn~S~G~~~~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~~~~~~~-----~~~v--itVgA~~~ 356 (813)
.+.|||||||...++.. ..+.++++++.+..+ |++||+||||+|....+.... .... +.|+.-.
T Consensus 146 ~~~~~p~VInlSlG~~~g~~~---g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~~~~~~~~ie~~v~~~~- 221 (455)
T cd07478 146 LELNKPLVINISLGTNFGSHD---GTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIVPNGETKTVELNVGEGE- 221 (455)
T ss_pred HHhCCCeEEEEccCcCCCCCC---CccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeeccCCceEEEEEEECCCC-
Confidence 47899999998765421 235677777777766 999999999999754433211 0001 2232211
Q ss_pred CccccceeeecCCcEEEeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCC
Q 044171 357 DRKYNNTIKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFEN 436 (813)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~ 436 (813)
..+.-.+....-..+...-..|.. ...+.+.... .. ...+.......++.+..+......
T Consensus 222 -~~~~~eiW~~~~d~~~v~i~sP~G---e~~~~i~~~~-------------~~---~~~~~~~~~~t~i~v~y~~~~~~~ 281 (455)
T cd07478 222 -KGFNLEIWGDFPDRFSVSIISPSG---ESSGRINPGI-------------GG---SESYKFVFEGTTVYVYYYLPEPYT 281 (455)
T ss_pred -cceEEEEecCCCCEEEEEEECCCC---CccCccCcCC-------------Cc---ceeEEEEECCeEEEEEEcCCCCCC
Confidence 111000100000000000001100 0000000000 00 000000000111111111111111
Q ss_pred CchhHHHHHHHHHhcCceEEEEEeCCCCC-CCCCccccccCCcc-eEEEcccchhHHHHHHHhhcCccCCCCceeeeeee
Q 044171 437 DDATIATVADNIKKIEAAGFILRMDPDQD-FSPNKFKDMALDVP-GIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHAR 514 (813)
Q Consensus 437 g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~-~~~~~~~~~~~~ip-~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~ 514 (813)
|...+...+.++ ..|-.-+.++...... .....+......-+ ..++...... .-..+.....++++.
T Consensus 282 g~~~i~i~~~~~-~~GiW~i~~~~~~~~~g~~~~Wlp~~~~~~~~t~f~~~~~~~--------tit~Pa~~~~vitVg-- 350 (455)
T cd07478 282 GDQLIFIRFKNI-KPGIWKIRLTGVSITDGRFDAWLPSRGLLSENTRFLEPDPYT--------TLTIPGTARSVITVG-- 350 (455)
T ss_pred CCeEEEEEccCC-CccceEEEEEeccCCCceEEEEecCcCcCCCCCEeecCCCCc--------eEecCCCCCCcEEEE--
Confidence 111111111111 1122333333222100 00000000000000 0011000000 000000001111111
Q ss_pred EEEccCeeeeecCCCCeeeecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhh
Q 044171 515 ARILDGRRAIYHGQAPVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATP 594 (813)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP 594 (813)
.++...+.++.||||||+.+ +++||||+|||++|+++.+ ++.|..++|||||||
T Consensus 351 ---------a~~~~~~~~~~~Ss~G~~~~-------~~~kpdi~APG~~i~s~~~----------~~~~~~~sGTS~Aap 404 (455)
T cd07478 351 ---------AYNQNNNSIAIFSGRGPTRD-------GRIKPDIAAPGVNILTASP----------GGGYTTRSGTSVAAA 404 (455)
T ss_pred ---------EEeCCCCcccCccCCCcCCC-------CCcCceEEecCCCEEEeec----------CCcEEeeCcHHHHHH
Confidence 12233456999999999987 7999999999999999985 458999999999999
Q ss_pred HHHHHHHHHHHhC------CCCCHHHHHHHHHccccccCCCCCcccccCCCCCccccccccCCCCCccCcc
Q 044171 595 HIAGVAALIKQRH------PKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAG 659 (813)
Q Consensus 595 ~VAG~aALl~q~~------p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaG 659 (813)
||||++|||+|.+ |.|++++||++|++||+++. ...+++++||||
T Consensus 405 ~vaG~aALl~~~~~~~~~~p~~~~~~ik~~L~~tA~~~~--------------------~~~~pn~~~GyG 455 (455)
T cd07478 405 IVAGACALLLQWGIVRGNDPYLYGEKIKTYLIRGARRRP--------------------GDEYPNPEWGYG 455 (455)
T ss_pred HHHHHHHHHHHhchhccCCCCCCHHHHHHHHHHhCccCC--------------------CCCCCCCCCCCC
Confidence 9999999999965 56799999999999998763 234567899998
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure |
| >cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-45 Score=393.51 Aligned_cols=267 Identities=24% Similarity=0.360 Sum_probs=191.7
Q ss_pred CCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCce--EEEEEchhhhhhc-----CCCC----
Q 044171 145 EGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKI--VGAQYFARAAIAY-----GDFN---- 213 (813)
Q Consensus 145 ~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki--~g~~~~~~~~~~~-----~~~~---- 213 (813)
|+|+|||||||||++||||++..|......+ ..+.. +..|+.+ +++++|....... ...+
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~~~~n~~e~~-~~~~d--------~d~ng~~dd~~g~~f~~~~~~~~~~~~~~~~~~~~ 71 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGKLWINKKEIP-GNGID--------DDNNGYIDDVNGWNFLGQYDPRRIVGDDPYDLTEK 71 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhhhhcCCcccC-CCCcc--------CCCCCccccccCeeccCCcccccccccCccccccc
Confidence 6899999999999999999987543222111 11111 1122222 4556665321100 0000
Q ss_pred --CCCCCCCCCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCCCCHHHHHHHHHHHHhCCCc
Q 044171 214 --STRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFGGYMADVVAAVDQAVEDGVD 291 (813)
Q Consensus 214 --~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~~ 291 (813)
...+...+.+..+|||||||||+|...++ .++.||||+|+|+.+|++.......+++++||+||+++|++
T Consensus 72 ~~g~~~~~~~~~~~gHGT~VAGiIaa~~~n~--------~g~~GvAp~a~i~~~k~~~~g~~~~~~i~~Ai~~a~~~g~~ 143 (291)
T cd07483 72 GYGNNDVNGPISDADHGTHVAGIIAAVRDNG--------IGIDGVADNVKIMPLRIVPNGDERDKDIANAIRYAVDNGAK 143 (291)
T ss_pred cccccccCCCCCCCCcHHHHHHHHhCcCCCC--------CceEEECCCCEEEEEEEecCCCcCHHHHHHHHHHHHHCCCc
Confidence 01122345578999999999999975422 23689999999999999865446778899999999999999
Q ss_pred EEEEccCCCCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCCC---CCC--------CCCceEEEeecccCccc
Q 044171 292 IISLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSSS---ILS--------FSPWITSIAASITDRKY 360 (813)
Q Consensus 292 VIn~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~---~~~--------~~~~vitVgA~~~~~~~ 360 (813)
|||||||..... ....+..+++.+.++|+++|+||||+|..... ++. ..+++|+|||++..
T Consensus 144 IiN~S~G~~~~~-----~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~--- 215 (291)
T cd07483 144 VINMSFGKSFSP-----NKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKK--- 215 (291)
T ss_pred EEEeCCCCCCCC-----ccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeecccc---
Confidence 999999964322 22467888899999999999999999864321 111 22455555553210
Q ss_pred cceeeecCCcEEEeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchh
Q 044171 361 NNTIKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDAT 440 (813)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~ 440 (813)
T Consensus 216 -------------------------------------------------------------------------------- 215 (291)
T cd07483 216 -------------------------------------------------------------------------------- 215 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhcCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccC
Q 044171 441 IATVADNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDG 520 (813)
Q Consensus 441 ~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 520 (813)
T Consensus 216 -------------------------------------------------------------------------------- 215 (291)
T cd07483 216 -------------------------------------------------------------------------------- 215 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeecCCCCeeeecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHH
Q 044171 521 RRAIYHGQAPVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVA 600 (813)
Q Consensus 521 ~~~~~~~~~~~~s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~a 600 (813)
.....++.||++|+. +|||+|||.+|+++.+ ++.|..++|||||||||||++
T Consensus 216 ------~~~~~~~~~Sn~G~~------------~vdi~APG~~i~s~~~----------~~~~~~~sGTS~AaP~vaG~a 267 (291)
T cd07483 216 ------YENNLVANFSNYGKK------------NVDVFAPGERIYSTTP----------DNEYETDSGTSMAAPVVSGVA 267 (291)
T ss_pred ------CCcccccccCCCCCC------------ceEEEeCCCCeEeccC----------cCCeEeeccHHHHHHHHHHHH
Confidence 000136889999974 3499999999999874 458999999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHcccc
Q 044171 601 ALIKQRHPKWSPAAITSAMMTSAE 624 (813)
Q Consensus 601 ALl~q~~p~~s~~~ik~~L~~TA~ 624 (813)
|||+|++|+|++.|||++|++||.
T Consensus 268 Al~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 268 ALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred HHHHHHCCCCCHHHHHHHHHHhCC
Confidence 999999999999999999999984
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat |
| >cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-45 Score=384.82 Aligned_cols=244 Identities=26% Similarity=0.319 Sum_probs=199.1
Q ss_pred CCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCCCCCCCCCC
Q 044171 141 EFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYAS 220 (813)
Q Consensus 141 ~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~ 220 (813)
+++|+||+|||||+|||.+||+|.+....... .+. .....
T Consensus 6 g~~g~gV~VaViDsGid~~hp~l~~~~~~~~~----------------------------~~~------------~~~~~ 45 (267)
T cd07476 6 GGGDPRITIAILDGPVDRTHPCFRGANLTPLF----------------------------TYA------------AAACQ 45 (267)
T ss_pred cCCCCCeEEEEeCCCcCCCChhhCCCcccccc----------------------------Ccc------------ccCCC
Confidence 78999999999999999999999975321100 000 00123
Q ss_pred CCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC--CCHHHHHHHHHHHHhCCCcEEEEccC
Q 044171 221 PFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG--GYMADVVAAVDQAVEDGVDIISLSVG 298 (813)
Q Consensus 221 ~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g--~~~~~i~~ai~~a~~~g~~VIn~S~G 298 (813)
..|..+|||||||||+|+.. ..+.||||+|+|+.+|++...+ ....++++||+||+++|++|||||||
T Consensus 46 ~~~~~gHGT~VAgii~g~~~----------~~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G 115 (267)
T cd07476 46 DGGASAHGTHVASLIFGQPC----------SSVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQGAHIINISGG 115 (267)
T ss_pred CCCCCCcHHHHHHHHhcCCC----------CCceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEecCC
Confidence 34678999999999998753 2367999999999999998754 34678999999999999999999999
Q ss_pred CCCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCCCCCCCceEEEeecccCccccceeeecCCcEEEeeecC
Q 044171 299 PSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSSSILSFSPWITSIAASITDRKYNNTIKLANGHSFSGIGLA 378 (813)
Q Consensus 299 ~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (813)
..... ......+.++++.|.++|++||+||||+|.....+|+..+++|+|||++.+
T Consensus 116 ~~~~~---~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~--------------------- 171 (267)
T cd07476 116 RLTQT---GEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDDD--------------------- 171 (267)
T ss_pred cCCCC---CCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecCC---------------------
Confidence 75422 123467888999999999999999999998877788889999999984311
Q ss_pred CCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEEE
Q 044171 379 PPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFIL 458 (813)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~ 458 (813)
T Consensus 172 -------------------------------------------------------------------------------- 171 (267)
T cd07476 172 -------------------------------------------------------------------------------- 171 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeeeeecCCCCeeeecccC
Q 044171 459 RMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPVVASYSSR 538 (813)
Q Consensus 459 ~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~s~FSS~ 538 (813)
+.++.||+|
T Consensus 172 -----------------------------------------------------------------------~~~~~~s~~ 180 (267)
T cd07476 172 -----------------------------------------------------------------------GLPLKFSNW 180 (267)
T ss_pred -----------------------------------------------------------------------CCeeeecCC
Confidence 125678999
Q ss_pred CCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHHHHHHHhCCC----CCHHH
Q 044171 539 GPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPK----WSPAA 614 (813)
Q Consensus 539 Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~----~s~~~ 614 (813)
|+.. .||||+|||.+|+++.+ ++.|..++|||||||||||++|||+|++|. ++|++
T Consensus 181 g~~~----------~~~~l~ApG~~i~~~~~----------~~~~~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~ 240 (267)
T cd07476 181 GADY----------RKKGILAPGENILGAAL----------GGEVVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLA 240 (267)
T ss_pred CCCC----------CCceEEecCCCceeecC----------CCCeEEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHH
Confidence 9864 47899999999999874 458999999999999999999999999887 89999
Q ss_pred HHHHHHccccccCCC
Q 044171 615 ITSAMMTSAEVTDHS 629 (813)
Q Consensus 615 ik~~L~~TA~~~~~~ 629 (813)
||++|++||.++...
T Consensus 241 vk~~L~~tA~~~~~~ 255 (267)
T cd07476 241 VRRALLETATPCDPE 255 (267)
T ss_pred HHHHHHHhCccCCCc
Confidence 999999999988643
|
Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). |
| >cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-44 Score=389.37 Aligned_cols=288 Identities=40% Similarity=0.556 Sum_probs=216.1
Q ss_pred CCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCCC---CCCCCCC
Q 044171 144 GEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFN---STRDYAS 220 (813)
Q Consensus 144 G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~---~~~~~~~ 220 (813)
|+||+|||||+|||++||+|.+... .++++..+++|........... .......
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPGF-----------------------PNDKVKGGYDFVDDDYDPMDTRPYPSPLGDAS 57 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCCC-----------------------CCCceeeeeECccCCCCcccccccccccccCC
Confidence 8999999999999999999996431 2334555666554311100000 0001122
Q ss_pred CCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-CCHHHHHHHHHHHHhCCCcEEEEccCC
Q 044171 221 PFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-GYMADVVAAVDQAVEDGVDIISLSVGP 299 (813)
Q Consensus 221 ~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~~VIn~S~G~ 299 (813)
..|..+|||||||+|+|...+ ...+.|+||+|+|+.+|+++..+ +...++++||+|+++++++|||||||.
T Consensus 58 ~~~~~~HGT~vAgiiag~~~n--------~~~~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g~ 129 (295)
T cd07474 58 AGDATGHGTHVAGIIAGNGVN--------VGTIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGS 129 (295)
T ss_pred CCCCCCcHHHHHHHHhcCCCc--------cCceEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 446889999999999988543 23468999999999999998554 788899999999999999999999997
Q ss_pred CCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCCC--CCCCCCceEEEeecccCccccceeeecCCcEEEeeec
Q 044171 300 SAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSSS--ILSFSPWITSIAASITDRKYNNTIKLANGHSFSGIGL 377 (813)
Q Consensus 300 ~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~--~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~ 377 (813)
.... ..+.+..+++++.++|+++|+||||+|..... .++..+++|+|||++....
T Consensus 130 ~~~~-----~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~~------------------ 186 (295)
T cd07474 130 SVNG-----PDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVADV------------------ 186 (295)
T ss_pred CCCC-----CCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccCc------------------
Confidence 5432 23567788889999999999999999876544 3667899999998531000
Q ss_pred CCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEE
Q 044171 378 APPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFI 457 (813)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i 457 (813)
T Consensus 187 -------------------------------------------------------------------------------- 186 (295)
T cd07474 187 -------------------------------------------------------------------------------- 186 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeeeeecCCCCeeeeccc
Q 044171 458 LRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPVVASYSS 537 (813)
Q Consensus 458 ~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~s~FSS 537 (813)
........|++
T Consensus 187 ---------------------------------------------------------------------~~~~~~~~~~s 197 (295)
T cd07474 187 ---------------------------------------------------------------------AEADTVGPSSS 197 (295)
T ss_pred ---------------------------------------------------------------------CCCCceeccCC
Confidence 00011233444
Q ss_pred -CCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHHHHHHHhCCCCCHHHHH
Q 044171 538 -RGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAIT 616 (813)
Q Consensus 538 -~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~s~~~ik 616 (813)
.|+... +++||||+|||++|++++... ++.|..++|||||||+|||++|||+|++|+|++++||
T Consensus 198 ~~~~~~~-------~~~kpdv~apG~~i~~~~~~~--------~~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~ 262 (295)
T cd07474 198 RGPPTSD-------SAIKPDIVAPGVDIMSTAPGS--------GTGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIK 262 (295)
T ss_pred CCCCCCC-------CCcCCCEECCcCceEeeccCC--------CCceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHH
Confidence 455543 689999999999999998542 2479999999999999999999999999999999999
Q ss_pred HHHHccccccCCCCCcccccCCCCCccccccccCCCCCccCccccCccCc
Q 044171 617 SAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGFINPARA 666 (813)
Q Consensus 617 ~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaG~vd~~~A 666 (813)
++|++||++....+. ..+++..+|+|+||+.+|
T Consensus 263 ~~L~~tA~~~~~~~~-----------------~~~~~~~~G~G~l~~~~A 295 (295)
T cd07474 263 AALMNTAKPLYDSDG-----------------VVYPVSRQGAGRVDALRA 295 (295)
T ss_pred HHHHhhCcccccCCC-----------------CcCChhccCcceeccccC
Confidence 999999998754332 122445899999999987
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-44 Score=375.58 Aligned_cols=224 Identities=27% Similarity=0.437 Sum_probs=184.3
Q ss_pred cEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCCCCCCCCCCCCCCCC
Q 044171 147 VVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYASPFDADG 226 (813)
Q Consensus 147 v~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~~g 226 (813)
|+|||||||||.+||+|.+.... .+++. .....|.++
T Consensus 1 V~VavIDsGvd~~hp~l~~~~~~-----------------------------~~~~~--------------~~~~~~~~~ 37 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVVIA-----------------------------RLFFA--------------GPGAPAPSA 37 (239)
T ss_pred CEEEEEeCCCCCCCcccccCccc-----------------------------cccCC--------------CCCCCCCCC
Confidence 78999999999999999864311 00000 012446789
Q ss_pred CccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC----CCHHHHHHHHHHHHhCCCcEEEEccCCCCC
Q 044171 227 HGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG----GYMADVVAAVDQAVEDGVDIISLSVGPSAV 302 (813)
Q Consensus 227 HGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g----~~~~~i~~ai~~a~~~g~~VIn~S~G~~~~ 302 (813)
|||||||||+|.... ..|+||+|+|+.+|++...+ ++..++++||+||++.|++|||||||...
T Consensus 38 HGT~vAgiia~~~~~-----------~~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~~- 105 (239)
T cd05561 38 HGTAVASLLAGAGAQ-----------RPGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGPP- 105 (239)
T ss_pred CHHHHHHHHhCCCCC-----------CcccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC-
Confidence 999999999998531 16999999999999998642 56788999999999999999999999632
Q ss_pred CCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCC-CCCCCCCCceEEEeecccCccccceeeecCCcEEEeeecCCCC
Q 044171 303 PSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSS-SSILSFSPWITSIAASITDRKYNNTIKLANGHSFSGIGLAPPT 381 (813)
Q Consensus 303 ~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (813)
...++++++++.++|++||+||||+|... ..+|+..+++|+||+++.+
T Consensus 106 -------~~~l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~~------------------------ 154 (239)
T cd05561 106 -------NALLAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDAR------------------------ 154 (239)
T ss_pred -------CHHHHHHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecCC------------------------
Confidence 25678889999999999999999999753 4567788999999984311
Q ss_pred CCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEEEEeC
Q 044171 382 LGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMD 461 (813)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~ 461 (813)
T Consensus 155 -------------------------------------------------------------------------------- 154 (239)
T cd05561 155 -------------------------------------------------------------------------------- 154 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeeeeecCCCCeeeecccCCCC
Q 044171 462 PDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPVVASYSSRGPD 541 (813)
Q Consensus 462 ~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~s~FSS~Gp~ 541 (813)
+.++.||++|+.
T Consensus 155 --------------------------------------------------------------------~~~~~~s~~g~~ 166 (239)
T cd05561 155 --------------------------------------------------------------------GRLYREANRGAH 166 (239)
T ss_pred --------------------------------------------------------------------CCccccCCCCCc
Confidence 135678999987
Q ss_pred cCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHHHHHHHhCCCCCHHHHHHHHHc
Q 044171 542 VNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAITSAMMT 621 (813)
Q Consensus 542 ~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~s~~~ik~~L~~ 621 (813)
. ||+|||++|+++.+ ++.|..++|||||||||||++|||+|++| +++++||++|++
T Consensus 167 ~-------------di~ApG~~i~~~~~----------~~~~~~~sGTS~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ 222 (239)
T cd05561 167 V-------------DFAAPGVDVWVAAP----------GGGYRYVSGTSFAAPFVTAALALLLQASP-LAPDDARARLAA 222 (239)
T ss_pred c-------------eEEccccceecccC----------CCCEEEeCCHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 6 89999999999763 45899999999999999999999999999 999999999999
Q ss_pred cccccCC
Q 044171 622 SAEVTDH 628 (813)
Q Consensus 622 TA~~~~~ 628 (813)
||+++..
T Consensus 223 ta~~~g~ 229 (239)
T cd05561 223 TAKDLGP 229 (239)
T ss_pred HhhccCC
Confidence 9987753
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-44 Score=379.25 Aligned_cols=246 Identities=31% Similarity=0.414 Sum_probs=197.9
Q ss_pred CcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCCCCCCCCCC-CCCC
Q 044171 146 GVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYAS-PFDA 224 (813)
Q Consensus 146 gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~-~~d~ 224 (813)
||+||||||||+++||+|..... ..+.++.+.++|.+.. .. ..|.
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~~----------------------~~~~~i~~~~~~~~~~------------~~~~~~~ 46 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKHL----------------------FKNLRILGEYDFVDNS------------NNTNYTD 46 (261)
T ss_pred CCEEEEEccCCCccCcchhhhcc----------------------ccCCceeeeecCccCC------------CCCCCCC
Confidence 79999999999999999953211 1234677778776541 11 3578
Q ss_pred CCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC---CCHHHHHHHHHHHHhCCCcEEEEccCCCC
Q 044171 225 DGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG---GYMADVVAAVDQAVEDGVDIISLSVGPSA 301 (813)
Q Consensus 225 ~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g---~~~~~i~~ai~~a~~~g~~VIn~S~G~~~ 301 (813)
++|||||||||+|+.. +.+.||||+|+|+.+|+..... ....+++.|++|+.+.|++|||||||...
T Consensus 47 ~~HGT~vagiia~~~~----------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~ 116 (261)
T cd07493 47 DDHGTAVLSTMAGYTP----------GVMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYTT 116 (261)
T ss_pred CCchhhhheeeeeCCC----------CCEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCC
Confidence 8999999999999853 2368999999999999876432 34557899999999999999999999765
Q ss_pred CCCC--------ChhhhhHHHHHHHHHHhCCcEEEEecCCCCCC---CCCCCCCCCceEEEeecccCccccceeeecCCc
Q 044171 302 VPSG--------PAAFLNALEMELLFATKAGVLVVQAAGNSGPS---SSSILSFSPWITSIAASITDRKYNNTIKLANGH 370 (813)
Q Consensus 302 ~~~~--------~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~---~~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~ 370 (813)
.... .......+.++++.+.++|+++|+||||+|.. ...+|+..+++|+|||++.+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~~------------- 183 (261)
T cd07493 117 FDNPTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDAN------------- 183 (261)
T ss_pred CCCcccccccccccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEeccC-------------
Confidence 3321 01123467888999999999999999999987 34567788999999984311
Q ss_pred EEEeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHh
Q 044171 371 SFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIKK 450 (813)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~ 450 (813)
T Consensus 184 -------------------------------------------------------------------------------- 183 (261)
T cd07493 184 -------------------------------------------------------------------------------- 183 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeeeeecCCCC
Q 044171 451 IEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAP 530 (813)
Q Consensus 451 ~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 530 (813)
+
T Consensus 184 -------------------------------------------------------------------------------~ 184 (261)
T cd07493 184 -------------------------------------------------------------------------------G 184 (261)
T ss_pred -------------------------------------------------------------------------------C
Confidence 1
Q ss_pred eeeecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHHHHHHHhCCCC
Q 044171 531 VVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKW 610 (813)
Q Consensus 531 ~~s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~ 610 (813)
.++.||++||+.+ +++||||+|||.+|++.. .++.|..++|||||||+|||++|||+|++|+|
T Consensus 185 ~~~~~S~~G~~~~-------~~~~pdi~a~G~~~~~~~----------~~~~~~~~sGTS~AaP~vaG~aAll~~~~p~l 247 (261)
T cd07493 185 NKASFSSIGPTAD-------GRLKPDVMALGTGIYVIN----------GDGNITYANGTSFSCPLIAGLIACLWQAHPNW 247 (261)
T ss_pred CCCccCCcCCCCC-------CCcCCceEecCCCeEEEc----------CCCcEEeeCcHHHHHHHHHHHHHHHHHHCCCC
Confidence 3578999999986 799999999999999854 24579999999999999999999999999999
Q ss_pred CHHHHHHHHHcccc
Q 044171 611 SPAAITSAMMTSAE 624 (813)
Q Consensus 611 s~~~ik~~L~~TA~ 624 (813)
++.|||++|++||+
T Consensus 248 t~~~i~~~l~~tA~ 261 (261)
T cd07493 248 TNLQIKEAILKSAS 261 (261)
T ss_pred CHHHHHHHHHHhcC
Confidence 99999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-44 Score=378.77 Aligned_cols=247 Identities=34% Similarity=0.479 Sum_probs=195.2
Q ss_pred CCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCCCCCCCCCCCCC
Q 044171 144 GEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYASPFD 223 (813)
Q Consensus 144 G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d 223 (813)
|+||+|||||+|||++||+|.+.... |... ++...+.+ ++.......+.|
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~~~~-------~~~~--------------~~~~~~~~---------~d~~~~~~~~~d 50 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNKYRG-------WGGG--------------SADHDYNW---------FDPVGNTPLPYD 50 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhcccc-------cCCC--------------Cccccccc---------ccCCCCCCCCCC
Confidence 89999999999999999999975210 0000 00000000 011112245567
Q ss_pred CCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCCCCHHHHHHHHHHHHh------------CCCc
Q 044171 224 ADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFGGYMADVVAAVDQAVE------------DGVD 291 (813)
Q Consensus 224 ~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g~~~~~i~~ai~~a~~------------~g~~ 291 (813)
..+|||||||||+|.... +...||||+|+|+.+|+++..++...+++++++|+++ .|++
T Consensus 51 ~~~HGT~vagii~g~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 121 (264)
T cd07481 51 DNGHGTHTMGTMVGNDGD---------GQQIGVAPGARWIACRALDRNGGNDADYLRCAQWMLAPTDSAGNPADPDLAPD 121 (264)
T ss_pred CCCchhhhhhheeecCCC---------CCceEECCCCeEEEEEeecCCCCcHHHHHHHHHHHHhcccccccccccccCCe
Confidence 889999999999987532 2237999999999999998877888899999999975 7899
Q ss_pred EEEEccCCCCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCC---CCCCCCCceEEEeecccCccccceeeecC
Q 044171 292 IISLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSS---SILSFSPWITSIAASITDRKYNNTIKLAN 368 (813)
Q Consensus 292 VIn~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~---~~~~~~~~vitVgA~~~~~~~~~~~~~~~ 368 (813)
|||||||.... ....+..+++.+.++|++||+||||++.... ..|+..+++|+|||++.+
T Consensus 122 Iin~S~G~~~~------~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~~----------- 184 (264)
T cd07481 122 VINNSWGGPSG------DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDRN----------- 184 (264)
T ss_pred EEEeCCCcCCC------CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCCC-----------
Confidence 99999997643 1355677788888999999999999986543 256778899999984311
Q ss_pred CcEEEeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHH
Q 044171 369 GHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNI 448 (813)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~ 448 (813)
T Consensus 185 -------------------------------------------------------------------------------- 184 (264)
T cd07481 185 -------------------------------------------------------------------------------- 184 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeeeeecCC
Q 044171 449 KKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQ 528 (813)
Q Consensus 449 ~~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 528 (813)
T Consensus 185 -------------------------------------------------------------------------------- 184 (264)
T cd07481 185 -------------------------------------------------------------------------------- 184 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCeeeecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHHHHHHHhCC
Q 044171 529 APVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHP 608 (813)
Q Consensus 529 ~~~~s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p 608 (813)
+.++.||++||... +++||||+|||.+|+++.+ ++.|..++|||||||+|||++|||+|++|
T Consensus 185 -~~~~~~S~~g~~~~-------~~~~~dv~ApG~~i~s~~~----------~~~~~~~~GTS~AaP~vaG~aAll~~~~p 246 (264)
T cd07481 185 -DVLADFSSRGPSTY-------GRIKPDISAPGVNIRSAVP----------GGGYGSSSGTSMAAPHVAGVAALLWSANP 246 (264)
T ss_pred -CCCccccCCCCCCC-------CCcCceEEECCCCeEEecC----------CCceEeeCcHHHHHHHHHHHHHHHHHhCC
Confidence 13678999999986 6999999999999999984 35889999999999999999999999999
Q ss_pred C--CCHHHHHHHHHcccc
Q 044171 609 K--WSPAAITSAMMTSAE 624 (813)
Q Consensus 609 ~--~s~~~ik~~L~~TA~ 624 (813)
+ ++++|||.+|++||+
T Consensus 247 ~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 247 SLIGDVDATEAILTETAR 264 (264)
T ss_pred CCCCCHHHHHHHHHHhcC
Confidence 9 999999999999985
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. |
| >KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=376.17 Aligned_cols=338 Identities=25% Similarity=0.378 Sum_probs=255.1
Q ss_pred ccCCCCCcEEEEEeCCCCcchhhhcccccCCchhhhHhhhhhhhhHHHHHHHHhcCCc---------------eeeEEEe
Q 044171 17 DFLPLNAKVFIVLMDEEPVTSLKLERSYDRNETDAIVYKERISGGHDRFLESLLHGHS---------------YTKLYSY 81 (813)
Q Consensus 17 ~~~~~~~~~yiV~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------------~~~~~~~ 81 (813)
+..+...++|||.|++.+. .+.++...++++..|+.-...+..... .+..+..
T Consensus 74 ~i~~~~~~~YiV~f~~~~~------------q~~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i 141 (501)
T KOG1153|consen 74 AIEEALPSRYIVVFKPDAS------------QQKISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDI 141 (501)
T ss_pred hhhcccccceEEEeCCCcc------------HHHHHhhhHHHHHHhhhhhccccccceeEeeccccchhhhccccccccc
Confidence 3345567899999996543 344555555555555543332222111 2233444
Q ss_pred cc-ceeEEEEEeCHHHHHHHHhcCcCeeEEEeCccceeccCC-----CCcccCCC---------CCCCCCCCCCCCCCCC
Q 044171 82 TH-LLSGFAIHIESEEAVSTLQNAKGVRIIHEDIKMEKLTMH-----TPEFLGIP---------VGVWPTLGGAEFSGEG 146 (813)
Q Consensus 82 ~~-~~~g~~~~~~~~~~~~~L~~~p~V~~v~~~~~~~~~~~~-----~~~~~~~~---------~~~w~~~~~~~~~G~g 146 (813)
.. +++|+.-.++.+-. ..+++.|-++.++++..++..... ....|++. ...|......-..|+|
T Consensus 142 ~~~~~~~y~~~ft~~~v-~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~~aG~g 220 (501)
T KOG1153|consen 142 GGRVFRGYTGYFTGESV-CSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEIDAGKG 220 (501)
T ss_pred ccchhhcccccccccee-eeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEeecccCCC
Confidence 44 78888888888887 999999999999988776543211 11122221 1234433333458999
Q ss_pred cEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCCCCCCCCCCCCCCCC
Q 044171 147 VVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYASPFDADG 226 (813)
Q Consensus 147 v~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~~g 226 (813)
|..+|+||||+.+||||.++. .| |..++ +.....|++|
T Consensus 221 vtaYv~DTGVni~H~dFegRa--------~w------Ga~i~----------------------------~~~~~~D~nG 258 (501)
T KOG1153|consen 221 VTAYVLDTGVNIEHPDFEGRA--------IW------GATIP----------------------------PKDGDEDCNG 258 (501)
T ss_pred eEEEEecccccccccccccce--------ec------ccccC----------------------------CCCcccccCC
Confidence 999999999999999999864 23 21111 0133458999
Q ss_pred CccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-CCHHHHHHHHHHHHhC---------CCcEEEEc
Q 044171 227 HGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-GYMADVVAAVDQAVED---------GVDIISLS 296 (813)
Q Consensus 227 HGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~---------g~~VIn~S 296 (813)
|||||||+|+++. .|||.+++|+++||++++| +..+++++++|++++. +..|.|||
T Consensus 259 HGTH~AG~I~sKt--------------~GvAK~s~lvaVKVl~~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlS 324 (501)
T KOG1153|consen 259 HGTHVAGLIGSKT--------------FGVAKNSNLVAVKVLRSDGSGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLS 324 (501)
T ss_pred Ccceeeeeeeccc--------------cccccccceEEEEEeccCCcEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEe
Confidence 9999999999984 5999999999999999999 9999999999999986 47899999
Q ss_pred cCCCCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCC-CCCCCCCCceEEEeecccCccccceeeecCCcEEEee
Q 044171 297 VGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSS-SSILSFSPWITSIAASITDRKYNNTIKLANGHSFSGI 375 (813)
Q Consensus 297 ~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~ 375 (813)
+|+.. +..++.|++.|.+.|+++++||||+..+. .+.|+.+..+|||||++..
T Consensus 325 lGg~~--------S~aLn~AV~~A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~~------------------ 378 (501)
T KOG1153|consen 325 LGGFR--------SAALNMAVNAASERGIHFAVAAGNEHEDACNSSPASSKKAITVGASTKN------------------ 378 (501)
T ss_pred cCCcc--------cHHHHHHHHHHhhcCeEEEEcCCCcchhhhccCcccccccEEecccccc------------------
Confidence 99863 46899999999999999999999998765 4567889999999995411
Q ss_pred ecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceE
Q 044171 376 GLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAG 455 (813)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g 455 (813)
T Consensus 379 -------------------------------------------------------------------------------- 378 (501)
T KOG1153|consen 379 -------------------------------------------------------------------------------- 378 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeeeeecCCCCeeeec
Q 044171 456 FILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPVVASY 535 (813)
Q Consensus 456 ~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~s~F 535 (813)
+.++.|
T Consensus 379 --------------------------------------------------------------------------D~iA~F 384 (501)
T KOG1153|consen 379 --------------------------------------------------------------------------DTIAFF 384 (501)
T ss_pred --------------------------------------------------------------------------cchhhh
Confidence 248999
Q ss_pred ccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHHHHHHHhCCC------
Q 044171 536 SSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPK------ 609 (813)
Q Consensus 536 SS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~------ 609 (813)
|+||++. ||.|||.+|+|+|.++. ......||||||+|||||++|..+..+|.
T Consensus 385 SN~G~CV-------------diFAPGv~IlSs~iGs~--------~at~ilSGTSMasPhvaG~aAy~ls~~~~~~~~f~ 443 (501)
T KOG1153|consen 385 SNWGKCV-------------DIFAPGVNILSSWIGSN--------NATAILSGTSMASPHVAGLAAYFLSLGPLPDSSFA 443 (501)
T ss_pred cCcccee-------------eeecCchhhhhhhhcCc--------cchheeecccccCcchhhhHHHhhhcCCCChHHhh
Confidence 9999999 89999999999997642 36689999999999999999999998883
Q ss_pred ---CCHHHHHHHHHcccc
Q 044171 610 ---WSPAAITSAMMTSAE 624 (813)
Q Consensus 610 ---~s~~~ik~~L~~TA~ 624 (813)
.+|.++|..+..-..
T Consensus 444 n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 444 NDAGSPSELKKRLLKFKT 461 (501)
T ss_pred hccCChHHhhhhhhcccc
Confidence 378888887776554
|
|
| >cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-43 Score=379.11 Aligned_cols=220 Identities=27% Similarity=0.340 Sum_probs=164.6
Q ss_pred CCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCCC---CHHHHHHHHHHHHhCCCcEEEEccC
Q 044171 222 FDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFGG---YMADVVAAVDQAVEDGVDIISLSVG 298 (813)
Q Consensus 222 ~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g~---~~~~i~~ai~~a~~~g~~VIn~S~G 298 (813)
.|+++|||||||||||+... ...+.||||+|+|+.+|+++...+ ...++++||++|++.|++|||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~--------~~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG 253 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPE--------EPERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYG 253 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCC--------CCceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCC
Confidence 36789999999999998432 134689999999999999875432 2356899999999999999999999
Q ss_pred CCCCCCCChhhhhHHHHHHH-HHHhCCcEEEEecCCCCCCCCCC--CC-CCCceEEEeecccCccccceeeecCCcEEEe
Q 044171 299 PSAVPSGPAAFLNALEMELL-FATKAGVLVVQAAGNSGPSSSSI--LS-FSPWITSIAASITDRKYNNTIKLANGHSFSG 374 (813)
Q Consensus 299 ~~~~~~~~~~~~~~~~~a~~-~a~~~Gi~vV~AAGN~g~~~~~~--~~-~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~ 374 (813)
......... .+.+++. .+.++|+++|+||||+|+...+. |+ ..++||+|||+.........
T Consensus 254 ~~~~~~~~~----~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~----------- 318 (412)
T cd04857 254 EATHWPNSG----RIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAE----------- 318 (412)
T ss_pred cCCCCccch----HHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCccccc-----------
Confidence 865432111 2233333 34578999999999999866543 33 47899999995422110000
Q ss_pred eecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcCce
Q 044171 375 IGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAA 454 (813)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~ 454 (813)
| .
T Consensus 319 ------------y----------------------~-------------------------------------------- 320 (412)
T cd04857 319 ------------Y----------------------S-------------------------------------------- 320 (412)
T ss_pred ------------c----------------------c--------------------------------------------
Confidence 0 0
Q ss_pred EEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeeeeecCCCCeeee
Q 044171 455 GFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPVVAS 534 (813)
Q Consensus 455 g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~s~ 534 (813)
. .....+.++.
T Consensus 321 ------~---------------------------------------------------------------~~~~~~~~~~ 331 (412)
T cd04857 321 ------L---------------------------------------------------------------REKLPGNQYT 331 (412)
T ss_pred ------c---------------------------------------------------------------ccccCCcccc
Confidence 0 0001235799
Q ss_pred cccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHHHHHHH----hCCCC
Q 044171 535 YSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQ----RHPKW 610 (813)
Q Consensus 535 FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q----~~p~~ 610 (813)
||||||+.+ |++||||+|||+.|.|+-. . ....|..|+|||||||||||++|||++ ++|+|
T Consensus 332 fSSrGP~~d-------G~~~pdI~APG~~I~s~p~-~-------~~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~ 396 (412)
T cd04857 332 WSSRGPTAD-------GALGVSISAPGGAIASVPN-W-------TLQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPY 396 (412)
T ss_pred ccccCCccc-------CCcCceEEeCCCcEEEccc-C-------CCCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCC
Confidence 999999987 8999999999999988521 1 234789999999999999999999985 57899
Q ss_pred CHHHHHHHHHcccccc
Q 044171 611 SPAAITSAMMTSAEVT 626 (813)
Q Consensus 611 s~~~ik~~L~~TA~~~ 626 (813)
+|.+||++|++||+++
T Consensus 397 tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 397 TPYSVRRALENTAKKL 412 (412)
T ss_pred CHHHHHHHHHHhCccC
Confidence 9999999999999864
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. |
| >cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=367.94 Aligned_cols=257 Identities=33% Similarity=0.559 Sum_probs=203.9
Q ss_pred CCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCCCCCCCCCCCCC
Q 044171 144 GEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYASPFD 223 (813)
Q Consensus 144 G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d 223 (813)
|+||+|+|||+||+++||+|.+...... .+. +.........|
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~~~-----------------------------~~~---------~~~~~~~~~~d 42 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIRFA-----------------------------DFV---------NTVNGRTTPYD 42 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccccccc-----------------------------ccc---------ccccCCCCCCC
Confidence 8999999999999999999997632110 000 00011244557
Q ss_pred CCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-CCHHHHHHHHHHHHhC----CCcEEEEccC
Q 044171 224 ADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-GYMADVVAAVDQAVED----GVDIISLSVG 298 (813)
Q Consensus 224 ~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~----g~~VIn~S~G 298 (813)
..+|||||||+|+|..... ...+.|+||+|+|+.+|+++..+ +..+++++||+|+++. +++|||||||
T Consensus 43 ~~~HGT~vAgiiag~~~~~-------~~~~~Giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~g 115 (264)
T cd07487 43 DNGHGTHVAGIIAGSGRAS-------NGKYKGVAPGANLVGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLG 115 (264)
T ss_pred CCCchHHHHHHHhcCCccc-------CCceEEECCCCeEEEEEeecCCCCccHHHHHHHHHHHHhhccccCceEEEeccC
Confidence 7899999999999985421 23468999999999999999876 7788999999999998 9999999999
Q ss_pred CCCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCC--CCCCCCCceEEEeecccCccccceeeecCCcEEEeee
Q 044171 299 PSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSS--SILSFSPWITSIAASITDRKYNNTIKLANGHSFSGIG 376 (813)
Q Consensus 299 ~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~--~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~ 376 (813)
..... ....+.+.++++++.++|++||+||||++.... ..|+..+++|+|||++.+..
T Consensus 116 ~~~~~---~~~~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~----------------- 175 (264)
T cd07487 116 APPDP---SYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP----------------- 175 (264)
T ss_pred CCCCC---CCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC-----------------
Confidence 76542 224567888899999999999999999998765 56778899999998542210
Q ss_pred cCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEE
Q 044171 377 LAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGF 456 (813)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~ 456 (813)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeeeeecCCCCeeeecc
Q 044171 457 ILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPVVASYS 536 (813)
Q Consensus 457 i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~s~FS 536 (813)
....++.||
T Consensus 176 -----------------------------------------------------------------------~~~~~~~~s 184 (264)
T cd07487 176 -----------------------------------------------------------------------HDDGISYFS 184 (264)
T ss_pred -----------------------------------------------------------------------CCccccccc
Confidence 001368899
Q ss_pred cCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHHHHHHHhCCCCCHHHHH
Q 044171 537 SRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAIT 616 (813)
Q Consensus 537 S~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~s~~~ik 616 (813)
++||+.+ +++||||+|||++|+++.+..... ....++.|..++|||||||+|||++|||+|++|.+++.+||
T Consensus 185 ~~G~~~~-------~~~~~di~apG~~i~~~~~~~~~~-~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik 256 (264)
T cd07487 185 SRGPTGD-------GRIKPDVVAPGENIVSCRSPGGNP-GAGVGSGYFEMSGTSMATPHVSGAIALLLQANPILTPDEVK 256 (264)
T ss_pred cCCCCCC-------CCcCCCEEccccceEecccccccc-CCCCCCceEeccccchHHHHHHHHHHHHHHHCcCCCHHHHH
Confidence 9999987 799999999999999986542111 11234589999999999999999999999999999999999
Q ss_pred HHHHcccc
Q 044171 617 SAMMTSAE 624 (813)
Q Consensus 617 ~~L~~TA~ 624 (813)
++|++||+
T Consensus 257 ~~L~~tA~ 264 (264)
T cd07487 257 CILRDTAT 264 (264)
T ss_pred HHHHhhcC
Confidence 99999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-42 Score=364.59 Aligned_cols=261 Identities=30% Similarity=0.382 Sum_probs=197.6
Q ss_pred CCCCCCCCCCCCCCcEEEEEeeccCCCCCCCCCCC-CCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCC
Q 044171 133 VWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHS-FRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGD 211 (813)
Q Consensus 133 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~ 211 (813)
+|.. +++|+||+|||||||||++||+|.+.. ...+.+. ...+.+.
T Consensus 2 aw~~----g~~G~gv~IaviDtGid~~Hp~~~~~~~~~~~~~~----------------------~~~~~~~-------- 47 (273)
T cd07485 2 AWEF----GTGGPGIIVAVVDTGVDGTHPDLQGNGDGDGYDPA----------------------VNGYNFV-------- 47 (273)
T ss_pred cccc----ccCCCCcEEEEEeCCCCCCChhhccCCCCCCcccc----------------------cCCcccc--------
Confidence 5766 789999999999999999999999862 1111100 0000000
Q ss_pred CCCCCCCCCCCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-CCHHHHHHHHHHHHhCCC
Q 044171 212 FNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-GYMADVVAAVDQAVEDGV 290 (813)
Q Consensus 212 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~ 290 (813)
.+.........|..+|||||||||++..+......|.. ...|+||+|+|+.+|+++..+ ....+++++|+|+++.|+
T Consensus 48 ~~~~~~~~~~~~~~gHGT~VAgiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~ 125 (273)
T cd07485 48 PNVGDIDNDVSVGGGHGTHVAGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGA 125 (273)
T ss_pred cccCCcCCCCCCCCCCHHHHHHHHHcccCCCcceeccc--cccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCC
Confidence 00001113345678999999999999754322111111 245799999999999999765 677889999999999999
Q ss_pred cEEEEccCCCCCCCCChhhhhHHHHHHHHHHhC-------CcEEEEecCCCCCCCCCCCCCCCceEEEeecccCccccce
Q 044171 291 DIISLSVGPSAVPSGPAAFLNALEMELLFATKA-------GVLVVQAAGNSGPSSSSILSFSPWITSIAASITDRKYNNT 363 (813)
Q Consensus 291 ~VIn~S~G~~~~~~~~~~~~~~~~~a~~~a~~~-------Gi~vV~AAGN~g~~~~~~~~~~~~vitVgA~~~~~~~~~~ 363 (813)
+|||||||..... .+...+..+++.+.++ |++||+||||++......|+..+++|+||+++.+
T Consensus 126 ~Vin~S~g~~~~~----~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~~------ 195 (273)
T cd07485 126 VILQNSWGGTGGG----IYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDTN------ 195 (273)
T ss_pred cEEEecCCCCCcc----ccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccCC------
Confidence 9999999975421 1335567777788777 9999999999998877778888999999984311
Q ss_pred eeecCCcEEEeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHH
Q 044171 364 IKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIAT 443 (813)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~ 443 (813)
T Consensus 196 -------------------------------------------------------------------------------- 195 (273)
T cd07485 196 -------------------------------------------------------------------------------- 195 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeee
Q 044171 444 VADNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRA 523 (813)
Q Consensus 444 ~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 523 (813)
T Consensus 196 -------------------------------------------------------------------------------- 195 (273)
T cd07485 196 -------------------------------------------------------------------------------- 195 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecCCCCeeeecccCCCCcCcccccCCCCCCCceecCCC-cEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHHHH
Q 044171 524 IYHGQAPVVASYSSRGPDVNNALLQTADVLKPNIMAPGS-SIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAAL 602 (813)
Q Consensus 524 ~~~~~~~~~s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~-~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aAL 602 (813)
+.++.||++|+.. ||+|||+ .|+++.+.... ...+.|..++|||||||+|||++||
T Consensus 196 ------~~~~~~S~~g~~~-------------~i~apG~~~i~~~~~~~~~----~~~~~~~~~sGTS~AaP~VaG~aAl 252 (273)
T cd07485 196 ------DNKASFSNYGRWV-------------DIAAPGVGTILSTVPKLDG----DGGGNYEYLSGTSMAAPHVSGVAAL 252 (273)
T ss_pred ------CCcCccccCCCce-------------EEEeCCCCccccccccccC----CCCCCeEeeccHHHHHHHHHHHHHH
Confidence 1356899999876 8999999 99988764311 0234799999999999999999999
Q ss_pred HHHhCCC-CCHHHHHHHHHcc
Q 044171 603 IKQRHPK-WSPAAITSAMMTS 622 (813)
Q Consensus 603 l~q~~p~-~s~~~ik~~L~~T 622 (813)
|+|++|. ++++|||++|++|
T Consensus 253 l~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 253 VLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred HHHhCCCCCCHHHHHHHHHhC
Confidence 9999999 9999999999986
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev |
| >cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=373.20 Aligned_cols=262 Identities=24% Similarity=0.267 Sum_probs=187.6
Q ss_pred cEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCCCCCCCCCCCCCCCC
Q 044171 147 VVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYASPFDADG 226 (813)
Q Consensus 147 v~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~~g 226 (813)
.+|||||||||.+||+|.+.... ...+.. ....+.|.+|
T Consensus 1 p~VaviDtGi~~~hp~l~~~~~~-----------------------------~~~~~~------------~~~~~~d~~g 39 (291)
T cd04847 1 PIVCVLDSGINRGHPLLAPALAE-----------------------------DDLDSD------------EPGWTADDLG 39 (291)
T ss_pred CEEEEecCCCCCCChhhhhhhcc-----------------------------cccccc------------CCCCcCCCCC
Confidence 37999999999999999975311 000000 0011568899
Q ss_pred CccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-----CCHHHHHHHHHHHHhCC---CcEEEEccC
Q 044171 227 HGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-----GYMADVVAAVDQAVEDG---VDIISLSVG 298 (813)
Q Consensus 227 HGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-----~~~~~i~~ai~~a~~~g---~~VIn~S~G 298 (813)
|||||||||++.... .....|+||+|+|+.+|+++..+ ...+++++||+|+++.+ ++|||||||
T Consensus 40 HGT~vAgiia~~~~~--------~~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG 111 (291)
T cd04847 40 HGTAVAGLALYGDLT--------LPGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLG 111 (291)
T ss_pred ChHHHHHHHHcCccc--------CCCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecC
Confidence 999999999875421 12357999999999999999863 45678999999999853 499999999
Q ss_pred CCCCCCCChhhhhHHHHHHH-HHHhCCcEEEEecCCCCCCCCC------------CCCCCCceEEEeecccCccccceee
Q 044171 299 PSAVPSGPAAFLNALEMELL-FATKAGVLVVQAAGNSGPSSSS------------ILSFSPWITSIAASITDRKYNNTIK 365 (813)
Q Consensus 299 ~~~~~~~~~~~~~~~~~a~~-~a~~~Gi~vV~AAGN~g~~~~~------------~~~~~~~vitVgA~~~~~~~~~~~~ 365 (813)
........ ....+..+++ .+.++|++||+||||++..... .|+.++++|+|||++.+.....+..
T Consensus 112 ~~~~~~~~--~~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~s~ 189 (291)
T cd04847 112 SPLPIDDG--RPSSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDRAR 189 (291)
T ss_pred CCCCccCC--CCCcHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCccc
Confidence 86543211 1123444443 3568999999999999986543 3566789999999764432100000
Q ss_pred ecCCcEEEeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHH
Q 044171 366 LANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVA 445 (813)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~ 445 (813)
T Consensus 190 -------------------------------------------------------------------------------- 189 (291)
T cd04847 190 -------------------------------------------------------------------------------- 189 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhcCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeeeee
Q 044171 446 DNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIY 525 (813)
Q Consensus 446 ~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 525 (813)
.+
T Consensus 190 ---------------------~~--------------------------------------------------------- 191 (291)
T cd04847 190 ---------------------YS--------------------------------------------------------- 191 (291)
T ss_pred ---------------------cc---------------------------------------------------------
Confidence 00
Q ss_pred cCCCCeeeecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCC--------CCCCCCCcceeeeccCChhhHHH
Q 044171 526 HGQAPVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEG--------DPNLKGRNFALLSGTSMATPHIA 597 (813)
Q Consensus 526 ~~~~~~~s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~--------~~~~~~~~y~~~sGTSMAaP~VA 597 (813)
.......+.|||+||..+ +.+||||+|||++|.++....... .....++.|..++||||||||||
T Consensus 192 ~~~~~~~~~fs~~Gp~~~-------~~~KPDl~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Va 264 (291)
T cd04847 192 AVGPAPAGATTSSGPGSP-------GPIKPDVVAFGGNLAYDPSGNAADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAA 264 (291)
T ss_pred ccccccCCCccccCCCCC-------CCcCCcEEeeCCceeecCCCCCccCcceeeecccCCCCCcccccccchHHHHHHH
Confidence 000001334999999987 799999999999999865421100 00113458999999999999999
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHcccc
Q 044171 598 GVAALIKQRHPKWSPAAITSAMMTSAE 624 (813)
Q Consensus 598 G~aALl~q~~p~~s~~~ik~~L~~TA~ 624 (813)
|++|||+|++|+++|++||++|++||+
T Consensus 265 g~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 265 RLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-42 Score=364.87 Aligned_cols=160 Identities=28% Similarity=0.358 Sum_probs=120.9
Q ss_pred cCCCCCCCCCCCCCCCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhh
Q 044171 127 LGIPVGVWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAA 206 (813)
Q Consensus 127 ~~~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~ 206 (813)
+++.. +|+. +++|+||+||||||||+..|| |..... .+ ++. +..
T Consensus 8 l~~~~-~~~~----G~~G~Gv~VaViDTGv~~~h~-~~~~~~---------~~---------------~~~----~~~-- 51 (298)
T cd07494 8 LNATR-VHQR----GITGRGVRVAMVDTGFYAHPF-FESRGY---------QV---------------RVV----LAP-- 51 (298)
T ss_pred cChhH-HHhc----CCCCCCcEEEEEeCCCcCCch-hhcCCc---------cc---------------eee----cCC--
Confidence 44433 5655 899999999999999999888 664321 00 000 000
Q ss_pred hhcCCCCCCCCCCCCCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCCCCHHHHHHHHHHHH
Q 044171 207 IAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFGGYMADVVAAVDQAV 286 (813)
Q Consensus 207 ~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g~~~~~i~~ai~~a~ 286 (813)
.......|++||||||||++ .||||+|+|+.+|+++. ..+++++||+||+
T Consensus 52 ---------~~~~~~~D~~gHGT~vag~i------------------~GvAP~a~i~~vkv~~~---~~~~~~~ai~~a~ 101 (298)
T cd07494 52 ---------GATDPACDENGHGTGESANL------------------FAIAPGAQFIGVKLGGP---DLVNSVGAFKKAI 101 (298)
T ss_pred ---------CCCCCCCCCCCcchheeece------------------eEeCCCCeEEEEEccCC---CcHHHHHHHHHHH
Confidence 01123457889999999864 48999999999999874 4567899999999
Q ss_pred hCCCcEEEEccCCCCCCCC------ChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCCCCCCCceEEEeecc
Q 044171 287 EDGVDIISLSVGPSAVPSG------PAAFLNALEMELLFATKAGVLVVQAAGNSGPSSSSILSFSPWITSIAASI 355 (813)
Q Consensus 287 ~~g~~VIn~S~G~~~~~~~------~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~vitVgA~~ 355 (813)
+++++|||||||....... .....+.+++++++|.++|++||+||||++. .+|+..|+||+|||++
T Consensus 102 ~~g~dVIn~SlG~~~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~ 173 (298)
T cd07494 102 SLSPDIISNSWGYDLRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVF 173 (298)
T ss_pred hcCCCEEEeecccCCCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEe
Confidence 9999999999997543221 0123456889999999999999999999974 5689999999999964
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=364.52 Aligned_cols=264 Identities=30% Similarity=0.375 Sum_probs=194.1
Q ss_pred CcEEEEEeeccCCCCCCCCCCCCCCCCcccc----ccccccc-CCCCCCCCCCCceEEEEEchhhhhhcCCCCCCCCCCC
Q 044171 146 GVVIGFIDTGINPEHPSFASHSFRGNQSISK----FKGKCTT-GNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYAS 220 (813)
Q Consensus 146 gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~ 220 (813)
||+|||||||||++||+|.+.....++.+.. .++.... .......+.+++.. .+.......
T Consensus 1 gV~VaviDtGi~~~Hp~l~~~~~~g~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--------------~~~~~~~~~ 66 (285)
T cd07496 1 GVVVAVLDTGVLFHHPDLAGVLLPGYDFISDPAIANDGDGRDSDPTDPGDWVTGDDV--------------PPGGFCGSG 66 (285)
T ss_pred CCEEEEecCCCCCCCcchhhccccCcccccCcccccCCCCCCCCCCCcccccccccc--------------cccccccCC
Confidence 7999999999999999999876443322210 0000000 00000001111100 001111234
Q ss_pred CCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCCCCHHHHHHHHHHHH----------hCCC
Q 044171 221 PFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFGGYMADVVAAVDQAV----------EDGV 290 (813)
Q Consensus 221 ~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g~~~~~i~~ai~~a~----------~~g~ 290 (813)
..+..+|||||||||+|...+ ...+.||||+|+|+.+|+++..++..+++++|++|++ ++++
T Consensus 67 ~~~~~~HGT~vAgiiaa~~~~--------~~~~~GvAp~a~i~~~~v~~~~~~~~~~i~~a~~~a~~~~~~~~~~~~~~~ 138 (285)
T cd07496 67 VSPSSWHGTHVAGTIAAVTNN--------GVGVAGVAWGARILPVRVLGKCGGTLSDIVDGMRWAAGLPVPGVPVNPNPA 138 (285)
T ss_pred CCCCCCCHHHHHHHHhCcCCC--------CCCceeecCCCeEEEEEEecCCCCcHHHHHHHHHHHhccCcCCCcccCCCC
Confidence 456789999999999998542 1346899999999999999887778899999999998 4578
Q ss_pred cEEEEccCCCCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCC-CCCCCCCCceEEEeecccCccccceeeecCC
Q 044171 291 DIISLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSS-SSILSFSPWITSIAASITDRKYNNTIKLANG 369 (813)
Q Consensus 291 ~VIn~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~ 369 (813)
+|||||||..... ...+.+++..+.++|++||+||||++... ..+|+..+++|+|||++.+
T Consensus 139 ~Iin~S~G~~~~~------~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~------------ 200 (285)
T cd07496 139 KVINLSLGGDGAC------SATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDLR------------ 200 (285)
T ss_pred eEEEeCCCCCCCC------CHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCCC------------
Confidence 9999999975431 35678888899999999999999999876 5677888999999984311
Q ss_pred cEEEeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHH
Q 044171 370 HSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIK 449 (813)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~ 449 (813)
T Consensus 201 -------------------------------------------------------------------------------- 200 (285)
T cd07496 201 -------------------------------------------------------------------------------- 200 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeeeeecCCC
Q 044171 450 KIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQA 529 (813)
Q Consensus 450 ~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 529 (813)
T Consensus 201 -------------------------------------------------------------------------------- 200 (285)
T cd07496 201 -------------------------------------------------------------------------------- 200 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CeeeecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCC-----CCCCCCCcceeeeccCChhhHHHHHHHHHH
Q 044171 530 PVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEG-----DPNLKGRNFALLSGTSMATPHIAGVAALIK 604 (813)
Q Consensus 530 ~~~s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~-----~~~~~~~~y~~~sGTSMAaP~VAG~aALl~ 604 (813)
+.++.||++|+.. ||+|||++|.++....... ........|..++|||||||+|||++|||+
T Consensus 201 ~~~~~~S~~g~~v-------------di~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~ 267 (285)
T cd07496 201 GQRASYSNYGPAV-------------DVSAPGGDCASDVNGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMK 267 (285)
T ss_pred CCcccccCCCCCC-------------CEEeCCCCccccCCCCccccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHH
Confidence 1367899999976 8999999999987543210 111234578999999999999999999999
Q ss_pred HhCCCCCHHHHHHHHHcc
Q 044171 605 QRHPKWSPAAITSAMMTS 622 (813)
Q Consensus 605 q~~p~~s~~~ik~~L~~T 622 (813)
|++|+|++++||++|++|
T Consensus 268 ~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 268 SVNPSLTPAQIESLLQST 285 (285)
T ss_pred HhCCCCCHHHHHHHHHhC
Confidence 999999999999999976
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=357.59 Aligned_cols=229 Identities=34% Similarity=0.506 Sum_probs=191.8
Q ss_pred CCCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCCCCCCCCC
Q 044171 140 AEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYA 219 (813)
Q Consensus 140 ~~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~ 219 (813)
.+++|+||+|||||+||+++||+|.++. ...+++... .
T Consensus 20 ~~~~G~gv~VaViDsGi~~~h~~~~~~~-----------------------------~~~~~~~~~-------------~ 57 (255)
T cd04077 20 DSSTGSGVDVYVLDTGIRTTHVEFGGRA-----------------------------IWGADFVGG-------------D 57 (255)
T ss_pred cCCCCCCcEEEEEcCCCCCCChhhhCCe-----------------------------eeeeecCCC-------------C
Confidence 3699999999999999999999998642 222222221 1
Q ss_pred CCCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-CCHHHHHHHHHHHHhC-----CCcEE
Q 044171 220 SPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-GYMADVVAAVDQAVED-----GVDII 293 (813)
Q Consensus 220 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~-----g~~VI 293 (813)
...|..+|||||||||++.. .||||+|+|+.+|+++..+ +..++++++++|+++. +++||
T Consensus 58 ~~~d~~~HGT~vAgiia~~~--------------~GvAp~a~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~ii 123 (255)
T cd04077 58 PDSDCNGHGTHVAGTVGGKT--------------YGVAKKANLVAVKVLDCNGSGTLSGIIAGLEWVANDATKRGKPAVA 123 (255)
T ss_pred CCCCCCccHHHHHHHHHccc--------------cCcCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccCCCeEE
Confidence 24578899999999999863 5999999999999999875 7788999999999987 48999
Q ss_pred EEccCCCCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCC-CCCCCCCCceEEEeecccCccccceeeecCCcEE
Q 044171 294 SLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSS-SSILSFSPWITSIAASITDRKYNNTIKLANGHSF 372 (813)
Q Consensus 294 n~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~ 372 (813)
|||||... ...+..+++++.++|+++|+||||+|... ...|+..+++|+|||++.+
T Consensus 124 n~S~g~~~--------~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~~--------------- 180 (255)
T cd04077 124 NMSLGGGA--------STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDSD--------------- 180 (255)
T ss_pred EeCCCCCC--------CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCCC---------------
Confidence 99999753 35677888899999999999999999765 4567788999999984311
Q ss_pred EeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcC
Q 044171 373 SGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIE 452 (813)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~G 452 (813)
T Consensus 181 -------------------------------------------------------------------------------- 180 (255)
T cd04077 181 -------------------------------------------------------------------------------- 180 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeeeeecCCCCee
Q 044171 453 AAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPVV 532 (813)
Q Consensus 453 a~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 532 (813)
+.+
T Consensus 181 -----------------------------------------------------------------------------~~~ 183 (255)
T cd04077 181 -----------------------------------------------------------------------------DAR 183 (255)
T ss_pred -----------------------------------------------------------------------------CCc
Confidence 125
Q ss_pred eecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHHHHHHHhCCCCCH
Q 044171 533 ASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSP 612 (813)
Q Consensus 533 s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~s~ 612 (813)
+.||++||.. ||+|||.+|.++.... ++.|..++|||||||+|||++|||+|++|++++
T Consensus 184 ~~~S~~g~~~-------------~i~apG~~i~~~~~~~--------~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~ 242 (255)
T cd04077 184 ASFSNYGSCV-------------DIFAPGVDILSAWIGS--------DTATATLSGTSMAAPHVAGLAAYLLSLGPDLSP 242 (255)
T ss_pred cCcccCCCCC-------------cEEeCCCCeEecccCC--------CCcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCH
Confidence 7889999976 8999999999987531 348999999999999999999999999999999
Q ss_pred HHHHHHHHccccc
Q 044171 613 AAITSAMMTSAEV 625 (813)
Q Consensus 613 ~~ik~~L~~TA~~ 625 (813)
++||++|++||++
T Consensus 243 ~~v~~~L~~tA~~ 255 (255)
T cd04077 243 AEVKARLLNLATK 255 (255)
T ss_pred HHHHHHHHhhccC
Confidence 9999999999974
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti |
| >cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=356.28 Aligned_cols=253 Identities=31% Similarity=0.458 Sum_probs=188.7
Q ss_pred CcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCCCCCCCCCCCCCCC
Q 044171 146 GVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYASPFDAD 225 (813)
Q Consensus 146 gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~~ 225 (813)
||+|||||+|||++||+|.+.... | .+|..+ .........|..
T Consensus 1 GV~VaviDsGv~~~hp~l~~~~~~-------~----------------------~~~~~~--------~~~~~~~~~d~~ 43 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGRVAQ-------W----------------------ADFDEN--------RRISATEVFDAG 43 (254)
T ss_pred CCEEEEEeCCCCCCCcchhcccCC-------c----------------------eeccCC--------CCCCCCCCCCCC
Confidence 799999999999999999875310 1 111100 001123445788
Q ss_pred CCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCCCCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCC
Q 044171 226 GHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFGGYMADVVAAVDQAVEDGVDIISLSVGPSAVPSG 305 (813)
Q Consensus 226 gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~~VIn~S~G~~~~~~~ 305 (813)
+|||||||||+|.... +...||||+|+|+.+|++...++..++++++|+|+++.+++|||||||.....
T Consensus 44 ~HGT~vAgiia~~~~~---------~~~~GvAp~a~i~~~~v~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~-- 112 (254)
T cd07490 44 GHGTHVSGTIGGGGAK---------GVYIGVAPEADLLHGKVLDDGGGSLSQIIAGMEWAVEKDADVVSMSLGGTYYS-- 112 (254)
T ss_pred CcHHHHHHHHhcCCCC---------CCEEEECCCCEEEEEEEecCCCCcHHHHHHHHHHHHhCCCCEEEECCCcCCCC--
Confidence 9999999999998541 23579999999999999988767888999999999999999999999976432
Q ss_pred ChhhhhHHHHHHHHHHh-CCcEEEEecCCCCCCCCCCCCCCCceEEEeecccCccccceeeecCCcEEEeeecCCCCCCC
Q 044171 306 PAAFLNALEMELLFATK-AGVLVVQAAGNSGPSSSSILSFSPWITSIAASITDRKYNNTIKLANGHSFSGIGLAPPTLGR 384 (813)
Q Consensus 306 ~~~~~~~~~~a~~~a~~-~Gi~vV~AAGN~g~~~~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (813)
.+.+..+++.+.+ +|++||+||||+|......|+..+++|+|||++.+.....+..
T Consensus 113 ----~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s~------------------- 169 (254)
T cd07490 113 ----EDPLEEAVEALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWFSS------------------- 169 (254)
T ss_pred ----CcHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCccC-------------------
Confidence 2445555555554 6999999999999887778888999999999754321000000
Q ss_pred ceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEEEEeCCCC
Q 044171 385 VYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPDQ 464 (813)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~ 464 (813)
+
T Consensus 170 -------------------------~------------------------------------------------------ 170 (254)
T cd07490 170 -------------------------F------------------------------------------------------ 170 (254)
T ss_pred -------------------------C------------------------------------------------------
Confidence 0
Q ss_pred CCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeeeeecCCCCeeeecccCCCCcCc
Q 044171 465 DFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPVVASYSSRGPDVNN 544 (813)
Q Consensus 465 ~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~s~FSS~Gp~~~~ 544 (813)
.......++.+|....
T Consensus 171 ----------------------------------------------------------------g~~~~~~~~~~~~~~~ 186 (254)
T cd07490 171 ----------------------------------------------------------------GSSGASLVSAPDSPPD 186 (254)
T ss_pred ----------------------------------------------------------------cccccccccCCCCCcc
Confidence 0001122233443321
Q ss_pred ccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHHHHHHHhCCCCCHHHHHHHHHcccc
Q 044171 545 ALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAITSAMMTSAE 624 (813)
Q Consensus 545 ~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~ 624 (813)
+..|||++|||.+|+++..... .++.|..++|||||||+|||++|||+|++|++++++||.+|++||+
T Consensus 187 ------~~~~~d~~apG~~i~~~~~~~~------~~~~~~~~~GTS~AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 187 ------EYTKPDVAAPGVDVYSARQGAN------GDGQYTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred ------CCcCceEEeccCCeEccccCCC------CCCCeeecccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999653211 3458999999999999999999999999999999999999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=356.52 Aligned_cols=248 Identities=35% Similarity=0.522 Sum_probs=202.5
Q ss_pred CCCcccCCCCCCCCCCCCCCCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEE
Q 044171 122 HTPEFLGIPVGVWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQY 201 (813)
Q Consensus 122 ~~~~~~~~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~ 201 (813)
+....++.+. +|.. + +|+||+|||||+||+++||+|.... +...++
T Consensus 11 w~~~~~~~~~-~~~~----~-~G~gv~I~viDsGi~~~h~~l~~~~----------------------------~~~~~~ 56 (260)
T cd07484 11 WNLDQIGAPK-AWDI----T-GGSGVTVAVVDTGVDPTHPDLLKVK----------------------------FVLGYD 56 (260)
T ss_pred CCccccChHH-HHhh----c-CCCCCEEEEEeCCCCCCCcccccCC----------------------------ccccee
Confidence 3344455544 7876 3 9999999999999999999985421 222233
Q ss_pred chhhhhhcCCCCCCCCCCCCCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-CCHHHHHH
Q 044171 202 FARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-GYMADVVA 280 (813)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-~~~~~i~~ 280 (813)
+.+. ...+.|..+|||||||||++..... ..+.|+||+|+|+.+|+++..+ +...++++
T Consensus 57 ~~~~------------~~~~~d~~~HGT~vagii~~~~~~~--------~~~~Giap~a~l~~~~v~~~~~~~~~~~~~~ 116 (260)
T cd07484 57 FVDN------------DSDAMDDNGHGTHVAGIIAAATNNG--------TGVAGVAPKAKIMPVKVLDANGSGSLADIAN 116 (260)
T ss_pred ccCC------------CCCCCCCCCcHHHHHHHHhCccCCC--------CceEeECCCCEEEEEEEECCCCCcCHHHHHH
Confidence 3221 1235578899999999999874321 3467999999999999998766 77889999
Q ss_pred HHHHHHhCCCcEEEEccCCCCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCCCCCCCceEEEeecccCccc
Q 044171 281 AVDQAVEDGVDIISLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSSSILSFSPWITSIAASITDRKY 360 (813)
Q Consensus 281 ai~~a~~~g~~VIn~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~vitVgA~~~~~~~ 360 (813)
+|+++++.|++|||||||... ....+.++++.+.++|++||+||||+|.....+|+..+++|+||+++.+
T Consensus 117 ai~~a~~~~~~iin~S~g~~~-------~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~~--- 186 (260)
T cd07484 117 GIRYAADKGAKVINLSLGGGL-------GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQD--- 186 (260)
T ss_pred HHHHHHHCCCeEEEecCCCCC-------CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCCC---
Confidence 999999999999999999754 3367888888999999999999999999888889999999999984311
Q ss_pred cceeeecCCcEEEeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchh
Q 044171 361 NNTIKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDAT 440 (813)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~ 440 (813)
T Consensus 187 -------------------------------------------------------------------------------- 186 (260)
T cd07484 187 -------------------------------------------------------------------------------- 186 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhcCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccC
Q 044171 441 IATVADNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDG 520 (813)
Q Consensus 441 ~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 520 (813)
T Consensus 187 -------------------------------------------------------------------------------- 186 (260)
T cd07484 187 -------------------------------------------------------------------------------- 186 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeecCCCCeeeecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHH
Q 044171 521 RRAIYHGQAPVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVA 600 (813)
Q Consensus 521 ~~~~~~~~~~~~s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~a 600 (813)
+.++.||++|+.. |++|||++|+++.+ .+.|..++|||||||+|||++
T Consensus 187 ---------~~~~~~s~~g~~~-------------~~~apG~~i~~~~~----------~~~~~~~~GTS~Aap~vag~~ 234 (260)
T cd07484 187 ---------DKRASFSNYGKWV-------------DVSAPGGGILSTTP----------DGDYAYMSGTSMATPHVAGVA 234 (260)
T ss_pred ---------CCcCCcCCCCCCc-------------eEEeCCCCcEeecC----------CCCEEEeeeHHHHHHHHHHHH
Confidence 1256788999875 89999999999874 348999999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHcccccc
Q 044171 601 ALIKQRHPKWSPAAITSAMMTSAEVT 626 (813)
Q Consensus 601 ALl~q~~p~~s~~~ik~~L~~TA~~~ 626 (813)
|||+|++| +++++||++|++||+++
T Consensus 235 Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 235 ALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred HHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 99999999 99999999999999865
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid |
| >cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-41 Score=361.33 Aligned_cols=277 Identities=29% Similarity=0.360 Sum_probs=201.0
Q ss_pred CCCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCCCCCCCCC
Q 044171 140 AEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYA 219 (813)
Q Consensus 140 ~~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~ 219 (813)
.|++|+||+|||||+|||++||+|.+..... ....++++.....+..
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~~~------------------~~~~~~~~~~~~~~~~--------------- 48 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNFNK------------------TNLFHRKIVRYDSLSD--------------- 48 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCcCc------------------CccCcccEEEeeccCC---------------
Confidence 4799999999999999999999998753200 0122344544433321
Q ss_pred CCCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC--CCHHHHHHHHHHHHhCCCcEEEEcc
Q 044171 220 SPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG--GYMADVVAAVDQAVEDGVDIISLSV 297 (813)
Q Consensus 220 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g--~~~~~i~~ai~~a~~~g~~VIn~S~ 297 (813)
...|..+|||||||||+|..+.... ...+.||||+|+|+.+|+++..+ ....++..+++++.+.+++||||||
T Consensus 49 ~~~d~~~HGT~vAgiia~~~~~~~~-----~~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~ 123 (293)
T cd04842 49 TKDDVDGHGTHVAGIIAGKGNDSSS-----ISLYKGVAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNSW 123 (293)
T ss_pred CCCCCCCCcchhheeeccCCcCCCc-----ccccccccccCeEEEEEeeccCccccCCccHHHHHHHHHHhCCEEEeccC
Confidence 1227899999999999998643210 11468999999999999988765 5566789999999999999999999
Q ss_pred CCCCCCCCChhhhhHHHHHHHHHH-h-CCcEEEEecCCCCCCCC---CCCCCCCceEEEeecccCccccceeeecCCcEE
Q 044171 298 GPSAVPSGPAAFLNALEMELLFAT-K-AGVLVVQAAGNSGPSSS---SILSFSPWITSIAASITDRKYNNTIKLANGHSF 372 (813)
Q Consensus 298 G~~~~~~~~~~~~~~~~~a~~~a~-~-~Gi~vV~AAGN~g~~~~---~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~ 372 (813)
|..... ....+..++.++. + +|++||+||||+|.... ..|+..+++|+|||++......
T Consensus 124 G~~~~~-----~~~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~----------- 187 (293)
T cd04842 124 GSPVNN-----GYTLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSN----------- 187 (293)
T ss_pred CCCCcc-----ccchHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCccc-----------
Confidence 986532 0122333343333 3 79999999999998765 5678899999999976432100
Q ss_pred EeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcC
Q 044171 373 SGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIE 452 (813)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~G 452 (813)
...|..
T Consensus 188 ----------------------------------~~~~~~---------------------------------------- 193 (293)
T cd04842 188 ----------------------------------GEGGLG---------------------------------------- 193 (293)
T ss_pred ----------------------------------cccccc----------------------------------------
Confidence 000000
Q ss_pred ceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeeeeecCCCCee
Q 044171 453 AAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPVV 532 (813)
Q Consensus 453 a~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 532 (813)
.....+.+
T Consensus 194 ------------------------------------------------------------------------~~~~~~~~ 201 (293)
T cd04842 194 ------------------------------------------------------------------------QSDNSDTV 201 (293)
T ss_pred ------------------------------------------------------------------------ccCCCCcc
Confidence 00111357
Q ss_pred eecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHHHHHHHhCC----
Q 044171 533 ASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHP---- 608 (813)
Q Consensus 533 s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p---- 608 (813)
+.||++||+.+ +++||||+|||++|+++..... .........|..++|||||||+|||++|||+|++|
T Consensus 202 ~~~S~~G~~~~-------~~~~pdv~ApG~~i~~~~~~~~-~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~ 273 (293)
T cd04842 202 ASFSSRGPTYD-------GRIKPDLVAPGTGILSARSGGG-GIGDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYY 273 (293)
T ss_pred ccccCcCCCCC-------CCcCCCEECCCCCeEeccCCCC-CCCCCChhheeecCcHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 99999999986 7999999999999999975421 00111345799999999999999999999999854
Q ss_pred ----CCCHHHHHHHHHcccc
Q 044171 609 ----KWSPAAITSAMMTSAE 624 (813)
Q Consensus 609 ----~~s~~~ik~~L~~TA~ 624 (813)
.+++.++|++|++||+
T Consensus 274 ~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 274 PTKFNPSAALLKALLINSAR 293 (293)
T ss_pred CCCcCcCHHHHHHHHHhcCC
Confidence 6667799999999985
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases |
| >cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-41 Score=354.90 Aligned_cols=247 Identities=21% Similarity=0.249 Sum_probs=177.8
Q ss_pred CCCCCCCCCCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCC
Q 044171 133 VWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDF 212 (813)
Q Consensus 133 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~ 212 (813)
+|+... ..|+||+|+|||+|||.+||||.++.....
T Consensus 7 aw~~~~---g~G~gV~VaviDtGid~~Hpdl~~~~~~~~----------------------------------------- 42 (277)
T cd04843 7 AWTKPG---GSGQGVTFVDIEQGWNLNHEDLVGNGITLI----------------------------------------- 42 (277)
T ss_pred HHHhcC---CCCCcEEEEEecCCCCCCChhhcccccccc-----------------------------------------
Confidence 787642 458999999999999999999997532100
Q ss_pred CCCCCCCCCCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCCCCHHHHHHHHHHHHh----C
Q 044171 213 NSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFGGYMADVVAAVDQAVE----D 288 (813)
Q Consensus 213 ~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g~~~~~i~~ai~~a~~----~ 288 (813)
. ...+.|+++|||||||||+|..+. .++.||||+|+|+.+|+++ .++++++|++|++ .
T Consensus 43 ~----~~~~~d~~gHGT~VAGiIaa~~n~---------~G~~GvAp~a~l~~i~v~~-----~~~~~~ai~~A~~~~~~~ 104 (277)
T cd04843 43 S----GLTDQADSDHGTAVLGIIVAKDNG---------IGVTGIAHGAQAAVVSSTR-----VSNTADAILDAADYLSPG 104 (277)
T ss_pred C----CCCCCCCCCCcchhheeeeeecCC---------CceeeeccCCEEEEEEecC-----CCCHHHHHHHHHhccCCC
Confidence 0 011457889999999999987421 2368999999999999986 2346666777766 3
Q ss_pred CCcEEEEccCCCCCCCC--ChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCC------------CC-CCCceEEEee
Q 044171 289 GVDIISLSVGPSAVPSG--PAAFLNALEMELLFATKAGVLVVQAAGNSGPSSSSI------------LS-FSPWITSIAA 353 (813)
Q Consensus 289 g~~VIn~S~G~~~~~~~--~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~------------~~-~~~~vitVgA 353 (813)
++.+||||||....... ...+.+.+..+++++.++|+++|+||||++...... +. ..+++|+|||
T Consensus 105 ~v~~in~s~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~VgA 184 (277)
T cd04843 105 DVILLEMQTGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMVGA 184 (277)
T ss_pred CEEEEEccccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEEEe
Confidence 56779999997542211 012445677789999999999999999998653211 11 1245666666
Q ss_pred cccCccccceeeecCCcEEEeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccC
Q 044171 354 SITDRKYNNTIKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFD 433 (813)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~ 433 (813)
++.+.
T Consensus 185 ~~~~~--------------------------------------------------------------------------- 189 (277)
T cd04843 185 GSSTT--------------------------------------------------------------------------- 189 (277)
T ss_pred ccCCC---------------------------------------------------------------------------
Confidence 32100
Q ss_pred CCCCchhHHHHHHHHHhcCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeee
Q 044171 434 FENDDATIATVADNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHA 513 (813)
Q Consensus 434 ~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~ 513 (813)
T Consensus 190 -------------------------------------------------------------------------------- 189 (277)
T cd04843 190 -------------------------------------------------------------------------------- 189 (277)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEccCeeeeecCCCCeeeecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChh
Q 044171 514 RARILDGRRAIYHGQAPVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMAT 593 (813)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAa 593 (813)
...++.||++|+.. ||+|||++|+++.............+.|..++||||||
T Consensus 190 ---------------~~~~~~fSn~G~~v-------------di~APG~~i~s~~~~~~~~~~~~~~~~~~~~sGTS~Aa 241 (277)
T cd04843 190 ---------------GHTRLAFSNYGSRV-------------DVYGWGENVTTTGYGDLQDLGGENQDYTDSFSGTSSAS 241 (277)
T ss_pred ---------------CCccccccCCCCcc-------------ceEcCCCCeEecCCCCcccccCCCCcceeeecccchhh
Confidence 01268899999976 89999999999986533211112233457899999999
Q ss_pred hHHHHHHHHHHH----h-CCCCCHHHHHHHHHcccc
Q 044171 594 PHIAGVAALIKQ----R-HPKWSPAAITSAMMTSAE 624 (813)
Q Consensus 594 P~VAG~aALl~q----~-~p~~s~~~ik~~L~~TA~ 624 (813)
|||||++|||++ + +|+|+++|||++|++|+.
T Consensus 242 P~VaG~aALl~s~~~~~~~p~lt~~~v~~~L~~t~~ 277 (277)
T cd04843 242 PIVAGAAASIQGIAKQKGGTPLTPIEMRELLTATGT 277 (277)
T ss_pred HHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhcCC
Confidence 999999999975 3 499999999999999973
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-41 Score=359.90 Aligned_cols=148 Identities=35% Similarity=0.502 Sum_probs=110.3
Q ss_pred CCCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCCCCCCCCC
Q 044171 140 AEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYA 219 (813)
Q Consensus 140 ~~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~ 219 (813)
.+++|+||+|||||+|||.+||+|.+.... .++|.+. .
T Consensus 3 ~~~tG~gv~VaVlDsGv~~~hp~l~~~~~~-----------------------------~~~~~~~-------------~ 40 (297)
T cd07480 3 SPFTGAGVRVAVLDTGIDLTHPAFAGRDIT-----------------------------TKSFVGG-------------E 40 (297)
T ss_pred CCCCCCCCEEEEEcCCCCCCChhhcCCccc-----------------------------CcccCCC-------------C
Confidence 369999999999999999999999875321 1111111 2
Q ss_pred CCCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-CCHHHHHHHHHHHHhCCCcEEEEccC
Q 044171 220 SPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-GYMADVVAAVDQAVEDGVDIISLSVG 298 (813)
Q Consensus 220 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~~VIn~S~G 298 (813)
.+.|.++|||||||||+|+... +...||||+|+|+.+|++...+ +...++++||+||++.|++|||||||
T Consensus 41 ~~~d~~gHGT~VAgiiag~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G 111 (297)
T cd07480 41 DVQDGHGHGTHCAGTIFGRDVP---------GPRYGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLG 111 (297)
T ss_pred CCCCCCCcHHHHHHHHhcccCC---------CcccccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEeccC
Confidence 2457889999999999987532 2346999999999999998755 67778999999999999999999999
Q ss_pred CCCC------CCCChhhhhHHHHHHHHH---------------HhCCcEEEEecCCCCCCC
Q 044171 299 PSAV------PSGPAAFLNALEMELLFA---------------TKAGVLVVQAAGNSGPSS 338 (813)
Q Consensus 299 ~~~~------~~~~~~~~~~~~~a~~~a---------------~~~Gi~vV~AAGN~g~~~ 338 (813)
.... +.........++.+.+.+ .++|++||+||||++...
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~ 172 (297)
T cd07480 112 ADFPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRP 172 (297)
T ss_pred CCCcccccccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCC
Confidence 7541 011112233444444444 789999999999998653
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=346.68 Aligned_cols=240 Identities=33% Similarity=0.506 Sum_probs=190.9
Q ss_pred cEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCCCCCCCCCCCCCCCC
Q 044171 147 VVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYASPFDADG 226 (813)
Q Consensus 147 v~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~~g 226 (813)
|+|||||+||+++||+|.+... +...+++.. +...+.|..+
T Consensus 1 V~VaviDsGi~~~hp~l~~~~~---------------------------~~~~~~~~~------------~~~~~~~~~~ 41 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKPK---------------------------LVPGWNFVS------------NNDPTSDIDG 41 (242)
T ss_pred CEEEEecCCCCCCChhhccCcC---------------------------ccCCccccC------------CCCCCCCCCC
Confidence 6899999999999999997410 011111110 1123457889
Q ss_pred CccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-CCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCC
Q 044171 227 HGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-GYMADVVAAVDQAVEDGVDIISLSVGPSAVPSG 305 (813)
Q Consensus 227 HGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~~VIn~S~G~~~~~~~ 305 (813)
|||||||||+|+..+. ..+.|+||+|+|+.+|+++..+ +..+++.++++|+++.+++|||||||.....
T Consensus 42 HGT~vAgiiag~~~~~--------~~~~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~-- 111 (242)
T cd07498 42 HGTACAGVAAAVGNNG--------LGVAGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWGGSDST-- 111 (242)
T ss_pred CHHHHHHHHHhccCCC--------ceeEeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccCCCCCC--
Confidence 9999999999985321 3468999999999999998765 6788899999999999999999999975433
Q ss_pred ChhhhhHHHHHHHHHHh-CCcEEEEecCCCCCCCCCCCCCCCceEEEeecccCccccceeeecCCcEEEeeecCCCCCCC
Q 044171 306 PAAFLNALEMELLFATK-AGVLVVQAAGNSGPSSSSILSFSPWITSIAASITDRKYNNTIKLANGHSFSGIGLAPPTLGR 384 (813)
Q Consensus 306 ~~~~~~~~~~a~~~a~~-~Gi~vV~AAGN~g~~~~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (813)
..+...++.++..+.+ +|++||+||||+|......++..+++|+|||++..
T Consensus 112 -~~~~~~~~~~~~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~~--------------------------- 163 (242)
T cd07498 112 -ESISSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDSN--------------------------- 163 (242)
T ss_pred -chHHHHHHHHHHHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCCC---------------------------
Confidence 2345778888888988 99999999999998877678889999999984311
Q ss_pred ceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEEEEeCCCC
Q 044171 385 VYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPDQ 464 (813)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~ 464 (813)
T Consensus 164 -------------------------------------------------------------------------------- 163 (242)
T cd07498 164 -------------------------------------------------------------------------------- 163 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeeeeecCCCCeeeecccCCCCcCc
Q 044171 465 DFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPVVASYSSRGPDVNN 544 (813)
Q Consensus 465 ~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~s~FSS~Gp~~~~ 544 (813)
+.+++||++||..
T Consensus 164 -----------------------------------------------------------------~~~~~~s~~g~~~-- 176 (242)
T cd07498 164 -----------------------------------------------------------------DARASYSNYGNYV-- 176 (242)
T ss_pred -----------------------------------------------------------------CCccCcCCCCCCe--
Confidence 1257889999986
Q ss_pred ccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHHHHHHHhCCCCCHHHHHHHHHcc
Q 044171 545 ALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAITSAMMTS 622 (813)
Q Consensus 545 ~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~s~~~ik~~L~~T 622 (813)
|++|||+++.++...... .....++.|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 177 -----------~~~apG~~~~~~~~~~~~-~~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 177 -----------DLVAPGVGIWTTGTGRGS-AGDYPGGGYGSFSGTSFASPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred -----------EEEeCcCCcccCCccccc-cccCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 899999999988543211 111235588999999999999999999999999999999999999976
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-40 Score=345.85 Aligned_cols=252 Identities=33% Similarity=0.457 Sum_probs=189.9
Q ss_pred CCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCCCCCCCCCCCCCC
Q 044171 145 EGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYASPFDA 224 (813)
Q Consensus 145 ~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~ 224 (813)
+||+|||||||||++||+|.+..+...... .+.+....+..+. +. ...++|. .+..++.|.
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~~~~~~~~~-~~~~~~~~~~~~~-----~~-~~~~~~~------------~~~~~~~d~ 62 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDNMWVNPGEI-PGNGIDDDGNGYV-----DD-IYGWNFV------------NNDNDPMDD 62 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccccccCcccc-cccCcccCCCCcc-----cC-CCccccc------------CCCCCCCCC
Confidence 689999999999999999998643211000 0111111111110 00 0111111 123456788
Q ss_pred CCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-CCHHHHHHHHHHHHhCCCcEEEEccCCCCCC
Q 044171 225 DGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-GYMADVVAAVDQAVEDGVDIISLSVGPSAVP 303 (813)
Q Consensus 225 ~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~~VIn~S~G~~~~~ 303 (813)
.+|||||||||+|..... ..+.|+||+|+|+.+|+++..+ +...+++++|+++++.+++|||+|||....
T Consensus 63 ~~HGT~va~ii~~~~~~~--------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~vin~S~G~~~~- 133 (259)
T cd07473 63 NGHGTHVAGIIGAVGNNG--------IGIAGVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVDMGAKIINNSWGGGGP- 133 (259)
T ss_pred CCcHHHHHHHHHCcCCCC--------CceEEeCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCCC-
Confidence 999999999999975422 2357999999999999998876 788899999999999999999999997542
Q ss_pred CCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCC---CCCCC--CCCceEEEeecccCccccceeeecCCcEEEeeecC
Q 044171 304 SGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSS---SSILS--FSPWITSIAASITDRKYNNTIKLANGHSFSGIGLA 378 (813)
Q Consensus 304 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~---~~~~~--~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (813)
...+..++.++.++|+++|+||||+|... ..++. ..+++|+||+.+.+
T Consensus 134 ------~~~~~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~~--------------------- 186 (259)
T cd07473 134 ------SQALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDSN--------------------- 186 (259)
T ss_pred ------CHHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCCC---------------------
Confidence 36777888899999999999999998762 23443 34778888874311
Q ss_pred CCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEEE
Q 044171 379 PPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFIL 458 (813)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~ 458 (813)
T Consensus 187 -------------------------------------------------------------------------------- 186 (259)
T cd07473 187 -------------------------------------------------------------------------------- 186 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeeeeecCCCCeeeecccC
Q 044171 459 RMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPVVASYSSR 538 (813)
Q Consensus 459 ~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~s~FSS~ 538 (813)
+.++.||++
T Consensus 187 -----------------------------------------------------------------------~~~~~~s~~ 195 (259)
T cd07473 187 -----------------------------------------------------------------------DALASFSNY 195 (259)
T ss_pred -----------------------------------------------------------------------CCcCcccCC
Confidence 134668999
Q ss_pred CCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHHHHHHHhCCCCCHHHHHHH
Q 044171 539 GPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAITSA 618 (813)
Q Consensus 539 Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~s~~~ik~~ 618 (813)
||.. ||+.|||.++++..+ ++.|..++|||||||+|||++|||+|++|.+++++||++
T Consensus 196 g~~~------------~~~~apG~~~~~~~~----------~~~~~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~ 253 (259)
T cd07473 196 GKKT------------VDLAAPGVDILSTSP----------GGGYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDA 253 (259)
T ss_pred CCCC------------cEEEeccCCeEeccC----------CCcEEEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 8753 499999999999653 458999999999999999999999999999999999999
Q ss_pred HHcccc
Q 044171 619 MMTSAE 624 (813)
Q Consensus 619 L~~TA~ 624 (813)
|++||+
T Consensus 254 L~~tA~ 259 (259)
T cd07473 254 ILSSAD 259 (259)
T ss_pred HHHhCC
Confidence 999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-40 Score=339.36 Aligned_cols=226 Identities=38% Similarity=0.570 Sum_probs=185.7
Q ss_pred CcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCCCCCCCCCCCCCCC
Q 044171 146 GVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYASPFDAD 225 (813)
Q Consensus 146 gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~~ 225 (813)
||+|||||+||+.+||+|.+... ..++|... .. ....|..
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~~~-----------------------------~~~~~~~~----------~~-~~~~~~~ 40 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLNIV-----------------------------GGANFTGD----------DN-NDYQDGN 40 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcccc-----------------------------CcccccCC----------CC-CCCCCCC
Confidence 79999999999999999987521 11122111 00 2345688
Q ss_pred CCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-CCHHHHHHHHHHHHhCCCcEEEEccCCCCCCC
Q 044171 226 GHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-GYMADVVAAVDQAVEDGVDIISLSVGPSAVPS 304 (813)
Q Consensus 226 gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~~VIn~S~G~~~~~~ 304 (813)
+|||||||||++.... ..+.|+||+|+|+.+|+++..+ +...+++++++++++.|++|||||||....
T Consensus 41 ~HGT~vA~ii~~~~~~---------~~~~giap~a~i~~~~~~~~~~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~~~-- 109 (229)
T cd07477 41 GHGTHVAGIIAALDNG---------VGVVGVAPEADLYAVKVLNDDGSGTYSDIIAGIEWAIENGMDIINMSLGGPSD-- 109 (229)
T ss_pred CCHHHHHHHHhcccCC---------CccEeeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEECCccCCC--
Confidence 9999999999997532 1467999999999999998876 677899999999999999999999997532
Q ss_pred CChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCC--CCCCCceEEEeecccCccccceeeecCCcEEEeeecCCCCC
Q 044171 305 GPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSSSI--LSFSPWITSIAASITDRKYNNTIKLANGHSFSGIGLAPPTL 382 (813)
Q Consensus 305 ~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~--~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (813)
...+..+++.+.++|+++|+||||++...... |+..+++|+||+++.+
T Consensus 110 -----~~~~~~~~~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~~------------------------- 159 (229)
T cd07477 110 -----SPALREAIKKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSN------------------------- 159 (229)
T ss_pred -----CHHHHHHHHHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecCC-------------------------
Confidence 24567788889999999999999999876654 8888999999985311
Q ss_pred CCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEEEEeCC
Q 044171 383 GRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDP 462 (813)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~ 462 (813)
T Consensus 160 -------------------------------------------------------------------------------- 159 (229)
T cd07477 160 -------------------------------------------------------------------------------- 159 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeeeeecCCCCeeeecccCCCCc
Q 044171 463 DQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPVVASYSSRGPDV 542 (813)
Q Consensus 463 ~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~s~FSS~Gp~~ 542 (813)
+.++.||++|+..
T Consensus 160 -------------------------------------------------------------------~~~~~~s~~g~~~ 172 (229)
T cd07477 160 -------------------------------------------------------------------NNRASFSSTGPEV 172 (229)
T ss_pred -------------------------------------------------------------------CCcCCccCCCCCc
Confidence 1246789999875
Q ss_pred CcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHHHHHHHhCCCCCHHHHHHHHHcc
Q 044171 543 NNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAITSAMMTS 622 (813)
Q Consensus 543 ~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~s~~~ik~~L~~T 622 (813)
|+.|||++|+++.+ .+.|..++|||||||+|||++|||+|++|++++.+||++|++|
T Consensus 173 -------------~~~apg~~i~~~~~----------~~~~~~~~GTS~Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 173 -------------ELAAPGVDILSTYP----------NNDYAYLSGTSMATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred -------------eEEeCCCCeEEecC----------CCCEEEEccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 89999999999874 3588999999999999999999999999999999999999976
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug |
| >cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-40 Score=341.49 Aligned_cols=159 Identities=23% Similarity=0.242 Sum_probs=119.0
Q ss_pred CCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCCCCCCCCCCCCC
Q 044171 144 GEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYASPFD 223 (813)
Q Consensus 144 G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d 223 (813)
+++|+|||||||||++||+|.++.... ++|.... .+.........|
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~i~~~-----------------------------~~~~~~~-----~~~~~~~~~~~d 47 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGKIIGG-----------------------------KSFSPYE-----GDGNKVSPYYVS 47 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccccccC-----------------------------CCCCCCC-----CCcccCCCCCCC
Confidence 789999999999999999999753211 1111100 000000112246
Q ss_pred CCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-------CCHHHHHHHHHHHHhCCCcEEEEc
Q 044171 224 ADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-------GYMADVVAAVDQAVEDGVDIISLS 296 (813)
Q Consensus 224 ~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-------~~~~~i~~ai~~a~~~g~~VIn~S 296 (813)
.+||||||||||+ |+||+|+|+.+|+++..+ +....+++||+||+++|+||||||
T Consensus 48 ~~gHGT~vAgiI~------------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S 109 (247)
T cd07491 48 ADGHGTAMARMIC------------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMS 109 (247)
T ss_pred CCCcHHHHHHHHH------------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEee
Confidence 8899999999984 689999999999998744 345689999999999999999999
Q ss_pred cCCCCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCC-C--CCCCCCceEEEeecc
Q 044171 297 VGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSS-S--ILSFSPWITSIAASI 355 (813)
Q Consensus 297 ~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~--~~~~~~~vitVgA~~ 355 (813)
||....... ....+.+.+++++|.++|++||+||||+|.... . .|+..++||+|||++
T Consensus 110 ~g~~~~~~~-~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~ 170 (247)
T cd07491 110 WTIKKPEDN-DNDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAAD 170 (247)
T ss_pred eeccccccc-ccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeC
Confidence 997543211 123578899999999999999999999998754 3 346678999999854
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-40 Score=353.46 Aligned_cols=276 Identities=34% Similarity=0.555 Sum_probs=210.1
Q ss_pred EEEEEeeccCCCCCCCC-CCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCCCCCCCCCCCCCCCC
Q 044171 148 VIGFIDTGINPEHPSFA-SHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYASPFDADG 226 (813)
Q Consensus 148 ~VaVIDtGid~~Hp~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~~g 226 (813)
+|||||||||++||+|. ++. ...++.+.+.|.++. .......|..+
T Consensus 1 ~V~viDtGid~~h~~~~~~~~------------------------~~~~~~~~~~~~~~~---------~~~~~~~~~~~ 47 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGNF------------------------IWSKVPGGYNFVDGN---------PNPSPSDDDNG 47 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTTE------------------------EEEEEEEEEETTTTB---------STTTSSSTSSS
T ss_pred CEEEEcCCcCCCChhHccCCc------------------------ccccccceeeccCCC---------CCcCccccCCC
Confidence 69999999999999999 432 012345566665541 11244567889
Q ss_pred CccccccccccCC-CccceecccccccccccccCccEEEEEEeeCCCCCHHHHHHHHHHHH-hCCCcEEEEccCCCCCCC
Q 044171 227 HGSHTASTAAGNH-RVPVIVSGFNYGYASGMAPGARIAVYKALYTFGGYMADVVAAVDQAV-EDGVDIISLSVGPSAVPS 304 (813)
Q Consensus 227 HGThVAGiiag~~-~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g~~~~~i~~ai~~a~-~~g~~VIn~S~G~~~~~~ 304 (813)
|||||||||++.. .. .....|+||+|+|+.+|+++..+....+++++|++++ +.+++|||||||......
T Consensus 48 HGT~va~ii~~~~~~~--------~~~~~Gva~~a~l~~~~i~~~~~~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~~ 119 (282)
T PF00082_consen 48 HGTHVAGIIAGNGGNN--------GPGINGVAPNAKLYSYKIFDNSGGTSSDLIEAIEYAVKNDGVDVINLSFGSNSGPP 119 (282)
T ss_dssp HHHHHHHHHHHTTSSS--------SSSETCSSTTSEEEEEECSSTTSEEHHHHHHHHHHHHHHTTSSEEEECEEBEESSS
T ss_pred ccchhhhhcccccccc--------ccccccccccccccccccccccccccccccchhhhhhhccCCcccccccccccccc
Confidence 9999999999985 11 1235899999999999998876677788999999999 899999999998732111
Q ss_pred CChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCC---CCCCCCCceEEEeecccCccccceeeecCCcEEEeeecCCCC
Q 044171 305 GPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSS---SILSFSPWITSIAASITDRKYNNTIKLANGHSFSGIGLAPPT 381 (813)
Q Consensus 305 ~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~---~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (813)
.....+.+..+++.+.++|+++|+||||+|.... ..|+..+++|+||+++..
T Consensus 120 -~~~~~~~~~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~~------------------------ 174 (282)
T PF00082_consen 120 -DPSYSDILEEAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDNN------------------------ 174 (282)
T ss_dssp -HSHHHHHHHHHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEETT------------------------
T ss_pred -ccccccccccccccccccCcceeeccccccccccccccccccccccccccccccc------------------------
Confidence 1234456777888999999999999999987654 356667888999874311
Q ss_pred CCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEEEEeC
Q 044171 382 LGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMD 461 (813)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~ 461 (813)
T Consensus 175 -------------------------------------------------------------------------------- 174 (282)
T PF00082_consen 175 -------------------------------------------------------------------------------- 174 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeeeeecCCCCeeeecccCCCC
Q 044171 462 PDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPVVASYSSRGPD 541 (813)
Q Consensus 462 ~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~s~FSS~Gp~ 541 (813)
+.++.||++|+.
T Consensus 175 --------------------------------------------------------------------~~~~~~s~~g~~ 186 (282)
T PF00082_consen 175 --------------------------------------------------------------------GQPASYSNYGGP 186 (282)
T ss_dssp --------------------------------------------------------------------SSBSTTSSBSTT
T ss_pred --------------------------------------------------------------------cccccccccccc
Confidence 125778999766
Q ss_pred cCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHHHHHHHhCCCCCHHHHHHHHHc
Q 044171 542 VNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAITSAMMT 621 (813)
Q Consensus 542 ~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~s~~~ik~~L~~ 621 (813)
.. .+++||||+|||.+|.++++... ...|..++|||||||+|||++|||+|++|++++.+||.+|++
T Consensus 187 ~~------~~~~~~di~a~G~~i~~~~~~~~-------~~~~~~~~GTS~Aap~vag~~All~~~~p~~~~~~i~~~l~~ 253 (282)
T PF00082_consen 187 SD------DGRIKPDIAAPGGNILSAVPGSD-------RGSYTSFSGTSFAAPVVAGAAALLLSKYPNLTPAEIKALLIN 253 (282)
T ss_dssp ET------TCTTCEEEEEECSSEEEEETTTE-------SEEEEEEESHHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred cc------ccccccccccccccccccccccc-------cccccccCcCCchHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 53 27999999999999998885421 135888999999999999999999999999999999999999
Q ss_pred cccccCCCCCcccccCCCCCccccccccCCCCCccCccccCccCcCC
Q 044171 622 SAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGFINPARAID 668 (813)
Q Consensus 622 TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaG~vd~~~A~~ 668 (813)
||.++.... .....+.||||++|+.+|++
T Consensus 254 ta~~~~~~~------------------~~~~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 254 TADDLGSTN------------------GEGYDNSYGWGLINAEKALN 282 (282)
T ss_dssp HSBESSETT------------------SSSSHHHHTTSBE-HHHHHH
T ss_pred hCcccCcCC------------------CCCCCCCccCChhCHHHHhC
Confidence 999876111 12334578999999999873
|
; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A .... |
| >cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=348.33 Aligned_cols=154 Identities=30% Similarity=0.466 Sum_probs=110.5
Q ss_pred CcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCCCCCCCCCCCCCCC
Q 044171 146 GVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYASPFDAD 225 (813)
Q Consensus 146 gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~~ 225 (813)
.|+|||||||||++||+|.+......... .....+ ... ......+.....|..
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~~~~~~~-------~~~~~~-------------~~~-------~~~~~~~~~~~~d~~ 53 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSISSYSKNL-------VPKGGY-------------DGK-------EAGETGDINDIVDKL 53 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhccccccccc-------ccCCCc-------------CCc-------cccccCCCCcCCCCC
Confidence 38999999999999999997532111000 000000 000 000011123455788
Q ss_pred CCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-CCHHHHHHHHHHHHhCCCcEEEEccCCCCCCC
Q 044171 226 GHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-GYMADVVAAVDQAVEDGVDIISLSVGPSAVPS 304 (813)
Q Consensus 226 gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~~VIn~S~G~~~~~~ 304 (813)
||||||||+|+|... ..||||+|+|+.+|+++..+ ....+++++|+||++++++|||||||......
T Consensus 54 gHGT~vAgiia~~~~------------~~GvAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~~ 121 (294)
T cd07482 54 GHGTAVAGQIAANGN------------IKGVAPGIGIVSYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIG 121 (294)
T ss_pred CcHhHHHHHHhcCCC------------CceeCCCCEEEEEEeecCCCCcCHHHHHHHHHHHHHCCCCEEEeCCccCCCCC
Confidence 999999999998742 34999999999999998876 48889999999999999999999999754332
Q ss_pred C----ChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCC
Q 044171 305 G----PAAFLNALEMELLFATKAGVLVVQAAGNSGPSS 338 (813)
Q Consensus 305 ~----~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~ 338 (813)
. .....+.+..+++.+.++|++||+||||+|...
T Consensus 122 ~~~~~~~~~~~~~~~~i~~a~~~g~lvv~AAGN~g~~~ 159 (294)
T cd07482 122 GEYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDGLDV 159 (294)
T ss_pred cccccchhhhHHHHHHHHHHHHCCCEEEEeCCCCCccc
Confidence 1 122345678888889999999999999998653
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h |
| >cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=328.20 Aligned_cols=149 Identities=27% Similarity=0.325 Sum_probs=115.5
Q ss_pred CcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCCCCCCCCCCCCCCC
Q 044171 146 GVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYASPFDAD 225 (813)
Q Consensus 146 gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~~ 225 (813)
||+|||||||||++||+|.+...... .+..+ +...+.....|..
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~~~~-----------------------------~~~~~-------~~~~~~~~~~d~~ 44 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLALDGE-----------------------------VTIDL-------EIIVVSAEGGDKD 44 (222)
T ss_pred CCEEEEEeCCCCCCChhhhccccccc-----------------------------ccccc-------ccccCCCCCCCCC
Confidence 79999999999999999997632110 00000 0001123445788
Q ss_pred CCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-CCHHHHHHHHHHHHhCCCcEEEEccCCCCCCC
Q 044171 226 GHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-GYMADVVAAVDQAVEDGVDIISLSVGPSAVPS 304 (813)
Q Consensus 226 gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~~VIn~S~G~~~~~~ 304 (813)
||||||||||++. +|+++|+.+|+++..+ +..+++++||+|++++|++|||||||.....
T Consensus 45 gHGT~vAgiia~~------------------~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~~~- 105 (222)
T cd07492 45 GHGTACAGIIKKY------------------APEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLGGPGDR- 105 (222)
T ss_pred CcHHHHHHHHHcc------------------CCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCCC-
Confidence 9999999999764 5899999999998876 7788899999999999999999999975422
Q ss_pred CChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCCCCCCCceEEEeec
Q 044171 305 GPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSSSILSFSPWITSIAAS 354 (813)
Q Consensus 305 ~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~vitVgA~ 354 (813)
....+..+++++.++|+++|+||||++.... .|+..++||+||+.
T Consensus 106 ----~~~~~~~~~~~a~~~g~l~V~aagN~~~~~~-~Pa~~~~vi~V~~~ 150 (222)
T cd07492 106 ----DFPLLKELLEYAYKAGGIIVAAAPNNNDIGT-PPASFPNVIGVKSD 150 (222)
T ss_pred ----cCHHHHHHHHHHHHCCCEEEEECCCCCCCCC-CCccCCceEEEEec
Confidence 2356778888899999999999999987543 37788899999974
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=337.40 Aligned_cols=323 Identities=22% Similarity=0.346 Sum_probs=238.2
Q ss_pred EeccceeEEEEEeCHHHH----HHHHhcCcCeeEEEeCccceeccCCC-----C-------cccC------CC-----CC
Q 044171 80 SYTHLLSGFAIHIESEEA----VSTLQNAKGVRIIHEDIKMEKLTMHT-----P-------EFLG------IP-----VG 132 (813)
Q Consensus 80 ~~~~~~~g~~~~~~~~~~----~~~L~~~p~V~~v~~~~~~~~~~~~~-----~-------~~~~------~~-----~~ 132 (813)
.|-.-|.-+-++-..++. ++.|...|+|+.+.|.+++.+...+. + .+++ .+ ..
T Consensus 92 ~YPsDF~vl~i~e~~k~~~~~~ierLe~hp~vk~v~pqr~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~ 171 (1033)
T KOG4266|consen 92 KYPSDFGVLWIEESGKEAVVGEIERLEMHPDVKVVFPQRRVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTL 171 (1033)
T ss_pred cCCCccceEEEeccCccchhheeeehhcCCCceeecchhhhhhcccccccCCCCCcceeeeeccccccccCCcccccccc
Confidence 454455555555443332 58999999999999988775421100 0 0000 00 00
Q ss_pred CCC-----------------CCCCCCCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCc
Q 044171 133 VWP-----------------TLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSK 195 (813)
Q Consensus 133 ~w~-----------------~~~~~~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~k 195 (813)
.|. .++..|++|++|+|||.|||+..+||.|+.-- ....|..
T Consensus 172 n~~RHl~a~~rQv~s~l~Ad~LWk~GyTGa~VkvAiFDTGl~~~HPHFrnvK-----ERTNWTN---------------- 230 (1033)
T KOG4266|consen 172 NWSRHLLAQKRQVTSMLGADHLWKKGYTGAKVKVAIFDTGLRADHPHFRNVK-----ERTNWTN---------------- 230 (1033)
T ss_pred ccchhhhhhhHHHHHHhchhhHHhccccCCceEEEEeecccccCCccccchh-----hhcCCcC----------------
Confidence 111 13345999999999999999999999999631 1112311
Q ss_pred eEEEEEchhhhhhcCCCCCCCCCCCCCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-CC
Q 044171 196 IVGAQYFARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-GY 274 (813)
Q Consensus 196 i~g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-~~ 274 (813)
+ ..-.|..||||.|||+|||.. ...|.||+++|+++|||.+.. .+
T Consensus 231 ---------E-------------~tLdD~lgHGTFVAGvia~~~------------ec~gfa~d~e~~~frvft~~qVSY 276 (1033)
T KOG4266|consen 231 ---------E-------------DTLDDNLGHGTFVAGVIAGRN------------ECLGFASDTEIYAFRVFTDAQVSY 276 (1033)
T ss_pred ---------c-------------cccccCcccceeEeeeeccch------------hhcccCCccceeEEEeeccceeeh
Confidence 0 233467899999999999984 347999999999999999876 88
Q ss_pred HHHHHHHHHHHHhCCCcEEEEccCCCCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCCCCCC--CceEEEe
Q 044171 275 MADVVAAVDQAVEDGVDIISLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSSSILSFS--PWITSIA 352 (813)
Q Consensus 275 ~~~i~~ai~~a~~~g~~VIn~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~--~~vitVg 352 (813)
.+.++.|+.||+...+||+|+|+|++. +...++-+-+.++...+|++|.|+||+|+-..+..+++ ..||.||
T Consensus 277 TSWFLDAFNYAI~~kidvLNLSIGGPD------fmD~PFVeKVwEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVG 350 (1033)
T KOG4266|consen 277 TSWFLDAFNYAIATKIDVLNLSIGGPD------FMDLPFVEKVWELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVG 350 (1033)
T ss_pred hhHHHHHHHHHHhhhcceEeeccCCcc------cccchHHHHHHhhccCcEEEEEecCCCCcceeecCCcccccceeeec
Confidence 999999999999999999999999864 34456666777788999999999999999877655433 3455555
Q ss_pred ecccCccccceeeecCCcEEEeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeecc
Q 044171 353 ASITDRKYNNTIKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSF 432 (813)
Q Consensus 353 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~ 432 (813)
..+
T Consensus 351 GId----------------------------------------------------------------------------- 353 (1033)
T KOG4266|consen 351 GID----------------------------------------------------------------------------- 353 (1033)
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 311
Q ss_pred CCCCCchhHHHHHHHHHhcCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeee
Q 044171 433 DFENDDATIATVADNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFH 512 (813)
Q Consensus 433 ~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~ 512 (813)
T Consensus 354 -------------------------------------------------------------------------------- 353 (1033)
T KOG4266|consen 354 -------------------------------------------------------------------------------- 353 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEEEccCeeeeecCCCCeeeecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCCh
Q 044171 513 ARARILDGRRAIYHGQAPVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMA 592 (813)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMA 592 (813)
-.+.++.|||||-+... .+..-||+||||++.|..|..+.. ..+...+||||.|
T Consensus 354 ---------------fdD~IA~FSSRGMtTWE-LP~GYGRmkpDiVtYG~~v~GS~v----------~~GCr~LSGTSVa 407 (1033)
T KOG4266|consen 354 ---------------FDDHIASFSSRGMTTWE-LPHGYGRMKPDIVTYGRDVMGSKV----------STGCRSLSGTSVA 407 (1033)
T ss_pred ---------------ccchhhhhccCCcceee-cCCcccccCCceEeeccccccCcc----------cccchhccCCccc
Confidence 01358999999976542 233448999999999999987753 2367899999999
Q ss_pred hhHHHHHHHHHHH----hCCCCCHHHHHHHHHccccccCCCCCcccccCCCCCccccccccCCCCCccCccccCccCcCC
Q 044171 593 TPHIAGVAALIKQ----RHPKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGFINPARAID 668 (813)
Q Consensus 593 aP~VAG~aALl~q----~~p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaG~vd~~~A~~ 668 (813)
+|.|||+++||.+ +.--++|+.+|++|+..|.+++.... +.||+|++|+.++++
T Consensus 408 SPVVAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg~NM----------------------fEQGaGkldLL~syq 465 (1033)
T KOG4266|consen 408 SPVVAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPGPNM----------------------FEQGAGKLDLLESYQ 465 (1033)
T ss_pred chhhhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCCCCch----------------------hhccCcchhHHHHHH
Confidence 9999999999976 33346899999999999998864432 589999999998874
|
|
| >cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=341.21 Aligned_cols=249 Identities=24% Similarity=0.266 Sum_probs=175.4
Q ss_pred CCCCCCCCCCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCC
Q 044171 133 VWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDF 212 (813)
Q Consensus 133 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~ 212 (813)
+|+. +++|+||+|+|||||||++||+|.+..... ..++|...
T Consensus 31 ~w~~----g~~G~gv~VaViDtGv~~~h~~l~~~~~~~---------------------------~~~~~~~~------- 72 (297)
T cd04059 31 AWEQ----GITGKGVTVAVVDDGLEITHPDLKDNYDPE---------------------------ASYDFNDN------- 72 (297)
T ss_pred HHhC----CCCCcceEEEEEeCCcccCCHhHhhccccc---------------------------ccccccCC-------
Confidence 5655 799999999999999999999998753210 01111110
Q ss_pred CCCCCCCCC--CCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCCCCHHHHHHHHHHHHhCCC
Q 044171 213 NSTRDYASP--FDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFGGYMADVVAAVDQAVEDGV 290 (813)
Q Consensus 213 ~~~~~~~~~--~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~ 290 (813)
.....+ .|.++|||||||||+|..... ....||||+|+|+.+|+++.. ........++.++.+ .+
T Consensus 73 ---~~~~~~~~~~~~gHGT~vAgiiag~~~~~--------~~~~GvAp~a~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~ 139 (297)
T cd04059 73 ---DPDPTPRYDDDNSHGTRCAGEIAAVGNNG--------ICGVGVAPGAKLGGIRMLDGD-VTDVVEAESLGLNPD-YI 139 (297)
T ss_pred ---CCCCCCccccccccCcceeeEEEeecCCC--------cccccccccceEeEEEecCCc-cccHHHHHHHhcccC-Cc
Confidence 000112 278899999999999985321 135799999999999998764 223344555655544 46
Q ss_pred cEEEEccCCCCCCCCChhhhhHHHHHHHHHHh-----CCcEEEEecCCCCCCCCC----CCCCCCceEEEeecccCcccc
Q 044171 291 DIISLSVGPSAVPSGPAAFLNALEMELLFATK-----AGVLVVQAAGNSGPSSSS----ILSFSPWITSIAASITDRKYN 361 (813)
Q Consensus 291 ~VIn~S~G~~~~~~~~~~~~~~~~~a~~~a~~-----~Gi~vV~AAGN~g~~~~~----~~~~~~~vitVgA~~~~~~~~ 361 (813)
+|||||||..............+..++.++.. +|++||+||||+|..... .+...+++|+|||++.+
T Consensus 140 ~Vin~S~g~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~~---- 215 (297)
T cd04059 140 DIYSNSWGPDDDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTAN---- 215 (297)
T ss_pred eEEECCCCCCCCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCCC----
Confidence 99999999764331111112233344444433 799999999999973221 22456788999885311
Q ss_pred ceeeecCCcEEEeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhH
Q 044171 362 NTIKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATI 441 (813)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~ 441 (813)
T Consensus 216 -------------------------------------------------------------------------------- 215 (297)
T cd04059 216 -------------------------------------------------------------------------------- 215 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCe
Q 044171 442 ATVADNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGR 521 (813)
Q Consensus 442 ~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 521 (813)
T Consensus 216 -------------------------------------------------------------------------------- 215 (297)
T cd04059 216 -------------------------------------------------------------------------------- 215 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeecCCCCeeeecccCCCCcCcccccCCCCCCCceecCCCc-------EEeccCCCCCCCCCCCCCcceeeeccCChhh
Q 044171 522 RAIYHGQAPVVASYSSRGPDVNNALLQTADVLKPNIMAPGSS-------IWAAWSPSSEGDPNLKGRNFALLSGTSMATP 594 (813)
Q Consensus 522 ~~~~~~~~~~~s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~-------I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP 594 (813)
+.++.||++|+.. +++|||.. |+++.... ....|..++|||||||
T Consensus 216 --------g~~~~~s~~g~~~-------------~~~a~g~~~~~~~~~i~~~~~~~-------~~~~~~~~sGTS~AaP 267 (297)
T cd04059 216 --------GVRASYSEVGSSV-------------LASAPSGGSGNPEASIVTTDLGG-------NCNCTSSHNGTSAAAP 267 (297)
T ss_pred --------CCCcCCCCCCCcE-------------EEEecCCCCCCCCCceEeCCCCC-------CCCcccccCCcchhhh
Confidence 1356788888876 78888877 77665431 1246789999999999
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHcccc
Q 044171 595 HIAGVAALIKQRHPKWSPAAITSAMMTSAE 624 (813)
Q Consensus 595 ~VAG~aALl~q~~p~~s~~~ik~~L~~TA~ 624 (813)
+|||++|||+|++|+|++.|||++|++||+
T Consensus 268 ~VAG~aAll~~~~p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 268 LAAGVIALMLEANPNLTWRDVQHILALTAR 297 (297)
T ss_pred hhHhHHHHhhccCCCCCHHHHHHHHHHhcC
Confidence 999999999999999999999999999985
|
Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation. |
| >cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=328.27 Aligned_cols=246 Identities=33% Similarity=0.435 Sum_probs=186.9
Q ss_pred CCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCCCCCCCCCCCC
Q 044171 143 SGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYASPF 222 (813)
Q Consensus 143 ~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~ 222 (813)
+|+||+|||||+||+.+||+|.+....... + . ...........
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~~~----~-------------------------~--------~~~~~~~~~~~ 43 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEASY----Y-------------------------V--------AVNDAGYASNG 43 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCccccccc----c-------------------------c--------ccccccCCCCC
Confidence 699999999999999999999986421100 0 0 00000112345
Q ss_pred CCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC--CCHHHHHHHHHHHHhCCCcEEEEccCCC
Q 044171 223 DADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG--GYMADVVAAVDQAVEDGVDIISLSVGPS 300 (813)
Q Consensus 223 d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g--~~~~~i~~ai~~a~~~g~~VIn~S~G~~ 300 (813)
|.++|||||||||+|.... ..+.|+||+|+|+.+|+++..+ .....+.++++++++.+++|||||||..
T Consensus 44 ~~~~HGT~vagiiag~~~~---------~~~~GiAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~ 114 (267)
T cd04848 44 DGDSHGTHVAGVIAAARDG---------GGMHGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASGVRIINNSWGGN 114 (267)
T ss_pred CCCChHHHHHHHHhcCcCC---------CCcccCCcCCEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEEccCCCC
Confidence 6889999999999998532 3468999999999999998764 5566789999999999999999999986
Q ss_pred CCCCCC--------hhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCC---------CCCCCceEEEeecccCccccce
Q 044171 301 AVPSGP--------AAFLNALEMELLFATKAGVLVVQAAGNSGPSSSSI---------LSFSPWITSIAASITDRKYNNT 363 (813)
Q Consensus 301 ~~~~~~--------~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~---------~~~~~~vitVgA~~~~~~~~~~ 363 (813)
...... ......+..++..+.++|+++|+||||++...... ++..+++|+||+++.+.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~~----- 189 (267)
T cd04848 115 PAIDTVSTTYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPNG----- 189 (267)
T ss_pred CcccccccchhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCCC-----
Confidence 533210 12456677788899999999999999998654332 23457788888754221
Q ss_pred eeecCCcEEEeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHH
Q 044171 364 IKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIAT 443 (813)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~ 443 (813)
T Consensus 190 -------------------------------------------------------------------------------- 189 (267)
T cd04848 190 -------------------------------------------------------------------------------- 189 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeee
Q 044171 444 VADNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRA 523 (813)
Q Consensus 444 ~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 523 (813)
T Consensus 190 -------------------------------------------------------------------------------- 189 (267)
T cd04848 190 -------------------------------------------------------------------------------- 189 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecCCCCeeee--cccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHHH
Q 044171 524 IYHGQAPVVAS--YSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAA 601 (813)
Q Consensus 524 ~~~~~~~~~s~--FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aA 601 (813)
.... ||++|+... .++++|||.+|+++.+. .+..|..++|||||||+|||++|
T Consensus 190 -------~~~~~~~s~~~~~~~----------~~~~~apG~~i~~~~~~--------~~~~~~~~~GTS~Aap~vaG~~A 244 (267)
T cd04848 190 -------TIASYSYSNRCGVAA----------NWCLAAPGENIYSTDPD--------GGNGYGRVSGTSFAAPHVSGAAA 244 (267)
T ss_pred -------Ccccccccccchhhh----------hheeecCcCceeecccC--------CCCcccccceeEchHHHHHHHHH
Confidence 1122 477776542 33799999999998753 13478899999999999999999
Q ss_pred HHHHhCCCCCHHHHHHHHHcccc
Q 044171 602 LIKQRHPKWSPAAITSAMMTSAE 624 (813)
Q Consensus 602 Ll~q~~p~~s~~~ik~~L~~TA~ 624 (813)
||+|++|++++++||++|++||+
T Consensus 245 l~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 245 LLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred HHHHHCCCCCHHHHHHHHHhhcC
Confidence 99999999999999999999985
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. |
| >KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=334.58 Aligned_cols=359 Identities=22% Similarity=0.298 Sum_probs=229.7
Q ss_pred CCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC---CCHHHHHHHHHHHHhCCCcEEEEccCCC
Q 044171 224 ADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG---GYMADVVAAVDQAVEDGVDIISLSVGPS 300 (813)
Q Consensus 224 ~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g---~~~~~i~~ai~~a~~~g~~VIn~S~G~~ 300 (813)
..-||||||||++|+.... ....||||+|+|+++++.+..- .+...+.+|+..++++.+||||||+|-.
T Consensus 309 Sg~HGTHVAgIa~anhpe~--------p~~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~ 380 (1304)
T KOG1114|consen 309 SGPHGTHVAGIAAANHPET--------PELNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGED 380 (1304)
T ss_pred CCCCcceehhhhccCCCCC--------ccccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCcc
Confidence 3469999999999996432 2457999999999999977632 3344689999999999999999999987
Q ss_pred CCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCCCC---CCCceEEEeecccCccccceeeecCCcEEEeeec
Q 044171 301 AVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSSSILS---FSPWITSIAASITDRKYNNTIKLANGHSFSGIGL 377 (813)
Q Consensus 301 ~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~---~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~ 377 (813)
...+... +.++.+-+.+.++|+++|.||||+|+.-.++++ ....+|.|||.-.......
T Consensus 381 a~~pn~G---RviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm~a--------------- 442 (1304)
T KOG1114|consen 381 AHLPNSG---RVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMMQA--------------- 442 (1304)
T ss_pred CCCCCcc---hHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHHHh---------------
Confidence 7665433 333333344558899999999999998766654 3457888888321110000
Q ss_pred CCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEE
Q 044171 378 APPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFI 457 (813)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i 457 (813)
T Consensus 443 -------------------------------------------------------------------------------- 442 (1304)
T KOG1114|consen 443 -------------------------------------------------------------------------------- 442 (1304)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeeeeecCCCCeeeeccc
Q 044171 458 LRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPVVASYSS 537 (813)
Q Consensus 458 ~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~s~FSS 537 (813)
.|. ...+..+....+||
T Consensus 443 ------------------------------------~y~---------------------------~~e~vp~~~YtWsS 459 (1304)
T KOG1114|consen 443 ------------------------------------EYS---------------------------VREPVPSNPYTWSS 459 (1304)
T ss_pred ------------------------------------hhh---------------------------hhccCCCCcccccc
Confidence 000 00011123677899
Q ss_pred CCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHHHHHHH----hCCCCCHH
Q 044171 538 RGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQ----RHPKWSPA 613 (813)
Q Consensus 538 ~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q----~~p~~s~~ 613 (813)
|||+.| |.+--.|+|||+.|.|-- .. .-..-..|.|||||+|+++|.+|||++ .+-.|||.
T Consensus 460 RgP~~D-------G~lGVsi~APggAiAsVP-~~-------tlq~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpy 524 (1304)
T KOG1114|consen 460 RGPCLD-------GDLGVSISAPGGAIASVP-QY-------TLQNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPY 524 (1304)
T ss_pred CCCCcC-------CCcceEEecCCccccCCc-hh-------hhhhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHH
Confidence 999998 889999999999987642 11 122457899999999999999999866 56789999
Q ss_pred HHHHHHHccccccCCCCCcccccCCCCCccccccccCCCCCccCccccCccCcCCCCeeeecchhhHHHhh-ccCCCCCc
Q 044171 614 AITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGFINPARAIDPGLIFNAHFQEYVQFL-CAVPGVDD 692 (813)
Q Consensus 614 ~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaG~vd~~~A~~~~lv~~~~~~~~~~~~-~~~~~~~~ 692 (813)
.||.+|++||.+++.. .++.||.|++++.+|.+--.-.+..+..-+.|+ ..++.--.
T Consensus 525 sVrrAlenTa~~l~~i----------------------d~faqG~GmlqVdkAyEyL~q~~~~f~~~l~f~~v~VgN~~s 582 (1304)
T KOG1114|consen 525 SVRRALENTATKLGDI----------------------DSFAQGQGMLQVDKAYEYLAQSDFSFPNALGFINVNVGNSCS 582 (1304)
T ss_pred HHHHHHHhcccccCcc----------------------chhccCcceeehhHHHHHHHHhhhcCCccceeEEEeeccccc
Confidence 9999999999988532 246899999999999863111111122222221 01110001
Q ss_pred cceeeecccCccCCCCCCCCCCCCCcEEEeccCccEEEEEEE----E-ecCC--CCeeEEEEEeCCCCcEEEEecCeEEE
Q 044171 693 DYVRRVTGYGCPTENQGWCSDLNTPSITISNLVGSRKVIRRV----R-NVSS--ANETYTVTVKEPSGVKVSVSPQVFKI 765 (813)
Q Consensus 693 ~~i~~~~~~~~~~~~~~~~~~~n~~s~~~~~~~~~~~~~~tv----~-N~~~--~~~ty~~~~~~~~g~~v~~~~~~~~v 765 (813)
+-|..+.+..|. .| ..+++-| . +..+ +...|++.........+--.|+.+-+
T Consensus 583 rGIyLRep~~~~-----------~p----------~e~~i~VePiF~~~~e~~keki~Fe~~L~L~st~pwVq~p~~l~l 641 (1304)
T KOG1114|consen 583 RGIYLREPTQVC-----------SP----------SEHTIGVEPIFENGEENEKEKISFEVQLSLASTQPWVQCPEYLML 641 (1304)
T ss_pred cceEecCCcccC-----------Cc----------cccceeccccccCccccccccccceeeEeeecCCcceeCchhhee
Confidence 112222111111 11 1111111 0 1111 12333333322222223334666666
Q ss_pred ecCcEEEEEEEEEEecCCCCeEE----EEEEEEeCCcceEEEeEEEEEe
Q 044171 766 RGLASRELKIVLKATNSTRAYSF----GAMVLQGNNNHIIRIPIAVYVS 810 (813)
Q Consensus 766 ~~g~~~~~~vt~~~~~~~~~~~~----G~i~~~~~~~~~l~~P~~~~~~ 810 (813)
.++.|.|.|++++.....+..+ ||-+-.++-++.+|||+.|..+
T Consensus 642 -~~~~R~i~VrVDpt~l~~G~hy~eV~gyD~~~p~~gplFrIPVTVi~P 689 (1304)
T KOG1114|consen 642 -ANQGRGINVRVDPTGLAPGVHYTEVLGYDTANPSRGPLFRIPVTVIKP 689 (1304)
T ss_pred -ccCCceeEEEECCcCCCCCcceEEEEEeecCCcccCceEEeeeEEEcc
Confidence 7889999999999987765554 4444445668899999987644
|
|
| >cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=285.37 Aligned_cols=117 Identities=20% Similarity=0.124 Sum_probs=84.3
Q ss_pred CCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCCCCHHHHHHHHHHH--HhCCCcEEEEccC
Q 044171 221 PFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFGGYMADVVAAVDQA--VEDGVDIISLSVG 298 (813)
Q Consensus 221 ~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g~~~~~i~~ai~~a--~~~g~~VIn~S~G 298 (813)
..|+++|||||||||||.. |++|+++|+..++.. ...+.+.++++|+ .+.+++|||||||
T Consensus 33 ~~~~~~HGThVAgiiag~~---------------~~~p~a~~~~~~~~~---~~~~~~~~~i~~~~~~~~gv~VINmS~G 94 (247)
T cd07488 33 NNTFDDHATLVASIMGGRD---------------GGLPAVNLYSSAFGI---KSNNGQWQECLEAQQNGNNVKIINHSYG 94 (247)
T ss_pred CCCCCCHHHHHHHHHHhcc---------------CCCCccceehhhhCC---CCCCccHHHHHHHHHhcCCceEEEeCCc
Confidence 3478999999999999973 567999998755522 2233466777787 6689999999999
Q ss_pred CCCCCCCC--hhhhhHHHHHHHHHHhC-CcEEEEecCCCCCCC-----CCCCCCCCceEEEeecc
Q 044171 299 PSAVPSGP--AAFLNALEMELLFATKA-GVLVVQAAGNSGPSS-----SSILSFSPWITSIAASI 355 (813)
Q Consensus 299 ~~~~~~~~--~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~-----~~~~~~~~~vitVgA~~ 355 (813)
........ ......+..+++.+.++ |+++|+||||+|... ...++.++++|+|||++
T Consensus 95 ~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d 159 (247)
T cd07488 95 EGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTD 159 (247)
T ss_pred cCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEec
Confidence 76433200 01123566777777666 999999999999743 22356678999999965
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-30 Score=266.86 Aligned_cols=122 Identities=38% Similarity=0.549 Sum_probs=100.2
Q ss_pred CCCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-CCHHHHHHHHHHHH-hCCCcEEEEcc
Q 044171 220 SPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-GYMADVVAAVDQAV-EDGVDIISLSV 297 (813)
Q Consensus 220 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-~~~~~i~~ai~~a~-~~g~~VIn~S~ 297 (813)
...+..+||||||++|++..... ...|+||+++|+.+|+....+ .....+++++++++ +.+++||||||
T Consensus 39 ~~~~~~~HGt~va~~i~~~~~~~---------~~~g~a~~a~i~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~iin~S~ 109 (241)
T cd00306 39 DPDDGNGHGTHVAGIIAASANNG---------GGVGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQGADVINLSL 109 (241)
T ss_pred CCCCCCCcHHHHHHHHhcCCCCC---------CCEEeCCCCEEEEEEEecCCCCcCHHHHHHHHHHHHhccCCCEEEeCC
Confidence 34567899999999999985422 126999999999999988766 67788999999999 89999999999
Q ss_pred CCCCCCCCChhhhhHHHHHHHHHHhC-CcEEEEecCCCCCCCC---CCCCCCCceEEEeecc
Q 044171 298 GPSAVPSGPAAFLNALEMELLFATKA-GVLVVQAAGNSGPSSS---SILSFSPWITSIAASI 355 (813)
Q Consensus 298 G~~~~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~~---~~~~~~~~vitVgA~~ 355 (813)
|..... ....+..++.++.++ |+++|+||||.+.... ..++..+++|+||+++
T Consensus 110 g~~~~~-----~~~~~~~~~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~ 166 (241)
T cd00306 110 GGPGSP-----PSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVD 166 (241)
T ss_pred CCCCCC-----CCHHHHHHHHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecC
Confidence 986432 234567777777777 9999999999998776 4678899999999854
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav |
| >COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.4e-23 Score=237.34 Aligned_cols=147 Identities=37% Similarity=0.564 Sum_probs=113.0
Q ss_pred CCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCCCCCCCCC-
Q 044171 141 EFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYA- 219 (813)
Q Consensus 141 ~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~- 219 (813)
+++|+|++|+|||+||+..||+|.+..... ++|.+. ...
T Consensus 138 ~~~g~gv~~~vid~gv~~~~~~~~~~~~~~-----------------------------~~~~~~-----------~~~~ 177 (508)
T COG1404 138 GLTGKGVTVAVIDTGVDASHPDLAGSAVAG-----------------------------GDFVDG-----------DPEP 177 (508)
T ss_pred CCCCCCeEEEEeccCCCCCChhhhcccccc-----------------------------cccccC-----------CCCC
Confidence 689999999999999999999999864211 111111 001
Q ss_pred CCCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCC-C-CCHHHHHHHHHHHHhCC--CcEEEE
Q 044171 220 SPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTF-G-GYMADVVAAVDQAVEDG--VDIISL 295 (813)
Q Consensus 220 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~-g-~~~~~i~~ai~~a~~~g--~~VIn~ 295 (813)
...|.++|||||+|++++.... +...+.|++|+++++.++++... + +..++++.+++++++.+ +++|||
T Consensus 178 ~~~d~~~hGt~vag~ia~~~~~-------~~~~~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~in~ 250 (508)
T COG1404 178 PFLDDNGHGTHVAGTIAAVIFD-------NGAGVAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGPADVINL 250 (508)
T ss_pred CCCCCCCCcceeeeeeeeeccc-------CCCccccccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHhcCCCCcEEEe
Confidence 2468899999999999984210 01236799999999999999976 5 77788899999999999 999999
Q ss_pred ccCCCCCCCCChhhhhHHHHHHHHHHhCC-cEEEEecCCCCCCC
Q 044171 296 SVGPSAVPSGPAAFLNALEMELLFATKAG-VLVVQAAGNSGPSS 338 (813)
Q Consensus 296 S~G~~~~~~~~~~~~~~~~~a~~~a~~~G-i~vV~AAGN~g~~~ 338 (813)
|+|.. .. ......+..++..+...| +++|+|+||.+...
T Consensus 251 s~g~~-~~---~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~ 290 (508)
T COG1404 251 SLGGS-LS---DSASPALGDALAAAANAGGVVIVAAAGNDGSNA 290 (508)
T ss_pred cCCCC-cc---ccccHHHHHHHHHHHHcCCEEEEEecccCCCCC
Confidence 99975 11 123466777888888777 99999999998765
|
|
| >KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.9e-21 Score=196.82 Aligned_cols=155 Identities=23% Similarity=0.376 Sum_probs=99.6
Q ss_pred CCCCCCCCCCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCC
Q 044171 133 VWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDF 212 (813)
Q Consensus 133 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~ 212 (813)
+|.. |++||+|++||+|.||||-||||+.+.. .+ ..|+|..
T Consensus 153 awa~----g~tgknvttaimddgvdymhpdlk~nyn------------ae---------------asydfss-------- 193 (629)
T KOG3526|consen 153 AWAL----GYTGKNVTTAIMDDGVDYMHPDLKSNYN------------AE---------------ASYDFSS-------- 193 (629)
T ss_pred HHhh----cccCCCceEEeecCCchhcCcchhcccC------------ce---------------eeccccc--------
Confidence 5555 8999999999999999999999997521 11 1223321
Q ss_pred CCCCCCCCCC--C--CCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCCCCHHHHHHHHHHHHh-
Q 044171 213 NSTRDYASPF--D--ADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFGGYMADVVAAVDQAVE- 287 (813)
Q Consensus 213 ~~~~~~~~~~--d--~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g~~~~~i~~ai~~a~~- 287 (813)
| .+++.|+ | .+.|||.|||-+++..+++.. -.|||.+.++..+|+++. -+..|+++|-..-.+
T Consensus 194 n--dpfpyprytddwfnshgtrcagev~aardngic--------gvgvaydskvagirmldq--pymtdlieansmghep 261 (629)
T KOG3526|consen 194 N--DPFPYPRYTDDWFNSHGTRCAGEVVAARDNGIC--------GVGVAYDSKVAGIRMLDQ--PYMTDLIEANSMGHEP 261 (629)
T ss_pred C--CCCCCCcccchhhhccCccccceeeeeccCCce--------eeeeeeccccceeeecCC--chhhhhhhhcccCCCC
Confidence 1 1112222 2 579999999987766544321 159999999999999986 466677665433332
Q ss_pred CCCcEEEEccCCCCCCCCChhhhhHHHHHHHHHHh-----CCcEEEEecCCCCCCC
Q 044171 288 DGVDIISLSVGPSAVPSGPAAFLNALEMELLFATK-----AGVLVVQAAGNSGPSS 338 (813)
Q Consensus 288 ~g~~VIn~S~G~~~~~~~~~~~~~~~~~a~~~a~~-----~Gi~vV~AAGN~g~~~ 338 (813)
..++|.+.|||.......-+...+..-+|+.+-++ .|-+.|.|+|..|...
T Consensus 262 ~kihiysaswgptddgktvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~d 317 (629)
T KOG3526|consen 262 SKIHIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGEDD 317 (629)
T ss_pred ceEEEEecccCcCCCCcccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCcc
Confidence 35789999999654321101112222333333333 4679999999988653
|
|
| >cd04056 Peptidases_S53 Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.9e-17 Score=177.12 Aligned_cols=103 Identities=29% Similarity=0.367 Sum_probs=83.4
Q ss_pred cccccccCccEEEEEEeeCCCCCHHHHHHHHHHHHhC---CCcEEEEccCCCCCCCCChhhhhHHHHHHHHHHhCCcEEE
Q 044171 252 YASGMAPGARIAVYKALYTFGGYMADVVAAVDQAVED---GVDIISLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVV 328 (813)
Q Consensus 252 ~~~GvAp~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~---g~~VIn~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV 328 (813)
.+.||||+|+|+.+++.+.. ..+++.++.+++.+ +++|||||||....... ..+.+.++.++.+|..+||+||
T Consensus 82 ~~~gvAP~a~i~~~~~~~~~---~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~-~~~~~~~~~~~~~a~~~Gitvv 157 (361)
T cd04056 82 YAGAIAPGANITLYFAPGTV---TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLP-PAYAQRVCNLFAQAAAQGITVL 157 (361)
T ss_pred HHHhccCCCeEEEEEECCcC---ccHHHHHHHHHHHcCCCCCCEEEccCCccccccC-HHHHHHHHHHHHHHHhCCeEEE
Confidence 46899999999999997642 34677888888887 99999999998653311 3456788999999999999999
Q ss_pred EecCCCCCCCC-----------CCCCCCCceEEEeecccCc
Q 044171 329 QAAGNSGPSSS-----------SILSFSPWITSIAASITDR 358 (813)
Q Consensus 329 ~AAGN~g~~~~-----------~~~~~~~~vitVgA~~~~~ 358 (813)
+||||+|.... .+|+.+|+|++||+++...
T Consensus 158 aAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~ 198 (361)
T cd04056 158 AASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYT 198 (361)
T ss_pred EeCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccC
Confidence 99999997643 3578899999999987553
|
Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin- |
| >PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.35 E-value=9.1e-12 Score=113.46 Aligned_cols=87 Identities=15% Similarity=0.262 Sum_probs=63.9
Q ss_pred EEeccCccEEEEEEEEecCCCCeeEEEEEeC--------CC----------Cc-EEEEecCeEEEecCcEEEEEEEEEEe
Q 044171 720 TISNLVGSRKVIRRVRNVSSANETYTVTVKE--------PS----------GV-KVSVSPQVFKIRGLASRELKIVLKAT 780 (813)
Q Consensus 720 ~~~~~~~~~~~~~tv~N~~~~~~ty~~~~~~--------~~----------g~-~v~~~~~~~~v~~g~~~~~~vt~~~~ 780 (813)
+|.+.....+++++|+|.|+++.+|++++.. .. .+ .+.+++.+|||+||++++|+|+|++|
T Consensus 2 ~L~d~~~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~ag~s~~v~vti~~p 81 (112)
T PF06280_consen 2 SLKDTGNKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPAGQSKTVTVTITPP 81 (112)
T ss_dssp EEEEE-SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-TTEEEEEEEEEE--
T ss_pred CccccCCceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECCCCEEEEEEEEEeh
Confidence 4455556688899999999999999999872 01 11 67888999999999999999999998
Q ss_pred c----CCCCeEEEEEEEEeCCcc-eEEEeEE
Q 044171 781 N----STRAYSFGAMVLQGNNNH-IIRIPIA 806 (813)
Q Consensus 781 ~----~~~~~~~G~i~~~~~~~~-~l~~P~~ 806 (813)
+ ..+++++|||+|+++++. .|+|||+
T Consensus 82 ~~~~~~~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 82 SGLDASNGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp GGGHHTT-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred hcCCcccCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 8 457899999999998776 9999996
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B. |
| >PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.8e-08 Score=83.08 Aligned_cols=79 Identities=22% Similarity=0.352 Sum_probs=55.1
Q ss_pred EEEEEeCCCCcchhhhcccccCCchhhhHhhhhhhhhHHHHHHHHh---cCCceeeEEEeccceeEEEEEeCHHHHHHHH
Q 044171 25 VFIVLMDEEPVTSLKLERSYDRNETDAIVYKERISGGHDRFLESLL---HGHSYTKLYSYTHLLSGFAIHIESEEAVSTL 101 (813)
Q Consensus 25 ~yiV~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~L 101 (813)
+|||.|+++.... .........+..++.+.. .....++.+.|...||||+++++.+++ ++|
T Consensus 1 ~YIV~~k~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i-~~L 64 (82)
T PF05922_consen 1 RYIVVFKDDASAA---------------SSFSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEI-EKL 64 (82)
T ss_dssp EEEEEE-TTSTHH---------------CHHHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHH-HHH
T ss_pred CEEEEECCCCCcc---------------hhHHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHH-HHH
Confidence 6999999986522 123334444444444333 334678899999999999999999999 999
Q ss_pred hcCcCeeEEEeCccceec
Q 044171 102 QNAKGVRIIHEDIKMEKL 119 (813)
Q Consensus 102 ~~~p~V~~v~~~~~~~~~ 119 (813)
+++|+|++|+||..++++
T Consensus 65 ~~~p~V~~Ve~D~~v~l~ 82 (82)
T PF05922_consen 65 RKDPGVKSVEPDQVVSLH 82 (82)
T ss_dssp HTSTTEEEEEEECEEEE-
T ss_pred HcCCCeEEEEeCceEecC
Confidence 999999999999988763
|
In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P .... |
| >cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.3e-07 Score=88.46 Aligned_cols=103 Identities=23% Similarity=0.303 Sum_probs=73.0
Q ss_pred CCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHH
Q 044171 414 ELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLL 493 (813)
Q Consensus 414 ~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~ 493 (813)
.++...+++|||+||.| |.|.+.+|..+++.+||+++|++|+..+... . .......+|.+++ +.+++..|+
T Consensus 39 ~d~~~~dv~GkIvL~~r------g~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~-~-~~~~~~~iP~v~I-s~~dG~~L~ 109 (143)
T cd02133 39 EDFEGKDVKGKIALIQR------GEITFVEKIANAKAAGAVGVIIYNNVDGLIP-G-TLGEAVFIPVVFI-SKEDGEALK 109 (143)
T ss_pred hccCCCCccceEEEEEC------CCCCHHHHHHHHHHCCCeEEEEeecCCCccc-c-cCCCCCeEeEEEe-cHHHHHHHH
Confidence 34556679999999988 5688999999999999999999998762211 1 1111346888887 778999999
Q ss_pred HHHhhcCccCCCCceeeeeeeEEEccCeeeeecCCCCeeeecccCCCC
Q 044171 494 EYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPVVASYSSRGPD 541 (813)
Q Consensus 494 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~s~FSS~Gp~ 541 (813)
+++++ . ..+.|... .. ....+.++.||||||+
T Consensus 110 ~~l~~-~------~~i~~~~~--------~~-~~~~p~va~fSsrgp~ 141 (143)
T cd02133 110 AALES-S------KKLTFNTK--------KE-KATNPDLADFSSRGPW 141 (143)
T ss_pred HHHhC-C------CeEEEEec--------cc-cccCCccccccCcCCC
Confidence 99876 1 12232221 11 2344669999999996
|
This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin |
| >cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=98.57 E-value=6.8e-07 Score=83.33 Aligned_cols=118 Identities=27% Similarity=0.471 Sum_probs=86.1
Q ss_pred eeecCCcEEEeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCch-hHH
Q 044171 364 IKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDA-TIA 442 (813)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~-~~~ 442 (813)
+.++|++++.|+++.+... ..+++++..... .......|. ...+...+++||||+|.+ +.+ .+.
T Consensus 2 i~LGng~~i~G~sl~~~~~--~~~~~~~~~~~~------~~~~~~~C~-~~~~~~~~v~GkIVlc~~------~~~~~~~ 66 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL--KTYPLVYKSANS------GDVDASLCL-PGSLDPSKVKGKIVLCDR------GGNTSRV 66 (126)
T ss_pred EEeCCCCEEEEEEccCCCC--CccceEeccCcC------CCCccccCC-CCCCChhhccccEEEEeC------CCCccHH
Confidence 5788999999999997654 456666533211 113456785 344556789999999988 445 788
Q ss_pred HHHHHHHhcCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcC
Q 044171 443 TVADNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHT 500 (813)
Q Consensus 443 ~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~ 500 (813)
.|..+++++||.|+|++++... ..........+|.+.+ ..+++..|++|+++..
T Consensus 67 ~k~~~~~~~GA~gvI~~~~~~~---~~~~~~~~~~iP~v~I-~~~~g~~l~~y~~~~~ 120 (126)
T cd02120 67 AKGDAVKAAGGAGMILANDPTD---GLDVVADAHVLPAVHV-DYEDGTAILSYINSTS 120 (126)
T ss_pred HHHHHHHHcCCcEEEEEecCCC---CceecccccccceEEE-CHHHHHHHHHHHHcCC
Confidence 9999999999999999998752 1111222467999998 6689999999998753
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu |
| >KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.1e-06 Score=98.15 Aligned_cols=159 Identities=22% Similarity=0.298 Sum_probs=97.3
Q ss_pred CCCCCCCCCCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCC
Q 044171 133 VWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDF 212 (813)
Q Consensus 133 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~ 212 (813)
+|.. +++|+++.|+|+|.|+...||++.... . ..+.+++... -
T Consensus 25 ~~~~----~~~g~~~~~~i~ddgl~~~h~~~~~~~----~-----------------------~~~s~d~~~~------~ 67 (431)
T KOG3525|consen 25 AWCK----GYTGTRVSVTILDDGLECSHPDLRNNY----D-----------------------PLGSYDVNRH------D 67 (431)
T ss_pred cccc----CCCCCceEEEEeeccccccCccccccc----C-----------------------cceeEeeecC------C
Confidence 5665 799999999999999999999999752 1 1222222211 0
Q ss_pred CCCCCCCCCCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCCCCHHHHHHHHHHHHh-CCCc
Q 044171 213 NSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFGGYMADVVAAVDQAVE-DGVD 291 (813)
Q Consensus 213 ~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g~~~~~i~~ai~~a~~-~g~~ 291 (813)
+...+-.+....+.|||-|++-.+...+.. .-..|+++++++..++++.. ...+...+...... ..++
T Consensus 68 ~~p~~~~~~~~~~~~g~~Ca~~~a~~~~~~--------~C~vg~~~~~~~~g~~~l~~---~v~~~~~~~~~~~~~~~~d 136 (431)
T KOG3525|consen 68 NDPEPRCDGTNENKHGTRCAGCVAARANNL--------TCGVGVAYNATIGGIRMLAG---CVSDAVEAPSLGFGPCHID 136 (431)
T ss_pred CCcccccCCCCccccCCCCCcccccccCCC--------cCCCCcccCccccceeeeee---ecccceecccccCCCCCce
Confidence 111111222235899999999998875221 12369999999999999864 22233333222222 3478
Q ss_pred EEEEccCCCCCCCCChhhhhHHHHHHHHHH-----hCCcEEEEecCCCCCCCC
Q 044171 292 IISLSVGPSAVPSGPAAFLNALEMELLFAT-----KAGVLVVQAAGNSGPSSS 339 (813)
Q Consensus 292 VIn~S~G~~~~~~~~~~~~~~~~~a~~~a~-----~~Gi~vV~AAGN~g~~~~ 339 (813)
+-..|||......--+.-......++..+. .+|-+.|+|.||.|....
T Consensus 137 i~scsw~pddd~~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~d 189 (431)
T KOG3525|consen 137 IYSCSWGPDDDGKTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCGD 189 (431)
T ss_pred eecCcCCcccCCCcCCCCcchhhhhhhccccccccCCCCeeEEEecCcccccc
Confidence 999999965422100111223333333333 568899999999887544
|
|
| >COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.1e-05 Score=96.76 Aligned_cols=98 Identities=20% Similarity=0.293 Sum_probs=62.6
Q ss_pred ccccccCccEEEEEEeeCCCCCHHHHHHHHHHHHhCCC-cEEEEccCCCCCC-CCChhhhhHHHHHHHHHHhCCcEEEEe
Q 044171 253 ASGMAPGARIAVYKALYTFGGYMADVVAAVDQAVEDGV-DIISLSVGPSAVP-SGPAAFLNALEMELLFATKAGVLVVQA 330 (813)
Q Consensus 253 ~~GvAp~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~-~VIn~S~G~~~~~-~~~~~~~~~~~~a~~~a~~~Gi~vV~A 330 (813)
.+-+||+|+|..+-. .. ........|+.+....=. -+|-.||+....- .....+.+.++.....|..+|+.+++|
T Consensus 288 s~A~AP~A~I~lvva--p~-~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeGITi~AA 364 (1174)
T COG4934 288 SHAMAPKANIDLVVA--PN-PLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEGITIFAA 364 (1174)
T ss_pred hhccCccCceEEEEc--CC-CceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccceEEEEe
Confidence 457999999988865 21 222233333333222111 3344566652211 122235677788888899999999999
Q ss_pred cCCCCCCCCC--------CCCCCCceEEEee
Q 044171 331 AGNSGPSSSS--------ILSFSPWITSIAA 353 (813)
Q Consensus 331 AGN~g~~~~~--------~~~~~~~vitVgA 353 (813)
+|.+|....+ .|+.+|+|.+||.
T Consensus 365 SGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 365 SGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred cccccccCCCcccceeecccCCCccEEeecC
Confidence 9999876542 4678999999997
|
|
| >cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.4e-05 Score=72.64 Aligned_cols=83 Identities=16% Similarity=0.265 Sum_probs=63.3
Q ss_pred ccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEEEEeCCCCCCC-CCccccccCCcceEEEccc
Q 044171 408 ESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPDQDFS-PNKFKDMALDVPGIILNNM 486 (813)
Q Consensus 408 ~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~-~~~~~~~~~~ip~~~i~~~ 486 (813)
..|. ..++...+++|||+|+.| |.|+|.+|..+|+++||.++|+||+...... +.........||.++| +.
T Consensus 31 ~gC~-~~~~~~~~l~gkIaLV~R------G~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP~v~I-s~ 102 (120)
T cd02129 31 VLCS-ASDVPPGGLKGKAVVVMR------GNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIPVALL-SY 102 (120)
T ss_pred CCCC-ccccCccccCCeEEEEEC------CCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCcccEEEE-eH
Confidence 5676 455666779999999999 7899999999999999999999998762111 1111224567899997 67
Q ss_pred chhHHHHHHHhh
Q 044171 487 QSSMDLLEYYNS 498 (813)
Q Consensus 487 ~~g~~~~~~~~~ 498 (813)
++|+.|++.+..
T Consensus 103 ~dG~~i~~~l~~ 114 (120)
T cd02129 103 KDMLDIQQTFGD 114 (120)
T ss_pred HHHHHHHHHhcc
Confidence 888888887653
|
This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A [] | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.7e-05 Score=70.55 Aligned_cols=77 Identities=19% Similarity=0.343 Sum_probs=58.7
Q ss_pred CCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEEEEeCCCCC-CCCCccccccCCcceEEEcccchhHH
Q 044171 413 PELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPDQD-FSPNKFKDMALDVPGIILNNMQSSMD 491 (813)
Q Consensus 413 ~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~-~~~~~~~~~~~~ip~~~i~~~~~g~~ 491 (813)
...+...+++||||||.| |.|++.+|+.+++++||.|+|++|..... ............||.+++ +.++++.
T Consensus 24 ~~~~~~~~~~gkIvlv~r------g~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I-~~~~g~~ 96 (101)
T PF02225_consen 24 PSDYNGSDVKGKIVLVER------GSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFI-SYEDGEA 96 (101)
T ss_dssp HHHTSTSTCTTSEEEEES------TSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE--HHHHHH
T ss_pred ccccCCccccceEEEEec------CCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEe-CHHHHhh
Confidence 456677889999999988 78999999999999999999999922211 122233456678999999 7888999
Q ss_pred HHHHH
Q 044171 492 LLEYY 496 (813)
Q Consensus 492 ~~~~~ 496 (813)
|++|+
T Consensus 97 L~~~i 101 (101)
T PF02225_consen 97 LLAYI 101 (101)
T ss_dssp HHHHH
T ss_pred hhccC
Confidence 98875
|
The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A .... |
| >cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530 | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.5e-05 Score=74.49 Aligned_cols=77 Identities=12% Similarity=0.115 Sum_probs=58.3
Q ss_pred CcCcccccceEEEEeeccCCCCCchh-----HHHHHHHHHhcCceEEEEEeCC--CCCCCCCccccc-cCCcceEEEccc
Q 044171 415 LFIPALVRGKLIICTYSFDFENDDAT-----IATVADNIKKIEAAGFILRMDP--DQDFSPNKFKDM-ALDVPGIILNNM 486 (813)
Q Consensus 415 ~~~~~~~~Gkivl~~~~~~~~~g~~~-----~~~~~~~~~~~Ga~g~i~~n~~--~~~~~~~~~~~~-~~~ip~~~i~~~ 486 (813)
++...+++|||+|++| |.|. |.+|..+|+++||+++|+||+. .+...+...... ...||.+++ +.
T Consensus 49 d~~~~d~~GkIaLI~R------G~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~i-s~ 121 (139)
T cd04817 49 SYICGGMAGKICLIER------GGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSV-DR 121 (139)
T ss_pred cccCCCcCccEEEEEC------CCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEe-eH
Confidence 4555678999999999 5677 9999999999999999999997 322222212222 457999998 67
Q ss_pred chhHHHHHHHhh
Q 044171 487 QSSMDLLEYYNS 498 (813)
Q Consensus 487 ~~g~~~~~~~~~ 498 (813)
++|+.|+..+..
T Consensus 122 ~dG~~L~~~l~~ 133 (139)
T cd04817 122 ADGQALLAALGQ 133 (139)
T ss_pred HHHHHHHHHhcC
Confidence 788889887653
|
This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY) | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00011 Score=67.98 Aligned_cols=83 Identities=14% Similarity=0.147 Sum_probs=60.4
Q ss_pred ccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEEEEeCC-CCCCCCCccccccCCcceEEEccc
Q 044171 408 ESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDP-DQDFSPNKFKDMALDVPGIILNNM 486 (813)
Q Consensus 408 ~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~-~~~~~~~~~~~~~~~ip~~~i~~~ 486 (813)
..|.. .++ +.+++|||+|+.| |.|.+.+|..+++++||.++|+||+. .+...+.........||.+++ +.
T Consensus 32 ~gC~~-~~~-~~~~~gkIvlv~r------g~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~I-s~ 102 (122)
T cd02130 32 LGCDA-ADY-PASVAGNIALIER------GECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGI-SQ 102 (122)
T ss_pred CCCCc-ccC-CcCCCCEEEEEEC------CCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEe-cH
Confidence 35653 222 2468999999998 67899999999999999999999987 322222222223456888887 67
Q ss_pred chhHHHHHHHhhc
Q 044171 487 QSSMDLLEYYNSH 499 (813)
Q Consensus 487 ~~g~~~~~~~~~~ 499 (813)
++|+.|+..+...
T Consensus 103 ~~G~~L~~~l~~g 115 (122)
T cd02130 103 EDGKALVAALANG 115 (122)
T ss_pred HHHHHHHHHHhcC
Confidence 8999999887655
|
This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab |
| >cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH) | Back alignment and domain information |
|---|
Probab=97.91 E-value=4.2e-05 Score=70.74 Aligned_cols=85 Identities=13% Similarity=0.163 Sum_probs=63.3
Q ss_pred cccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEEEEeCCCCCCCCCccc--cccCCcceEEEc
Q 044171 407 LESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPDQDFSPNKFK--DMALDVPGIILN 484 (813)
Q Consensus 407 ~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~--~~~~~ip~~~i~ 484 (813)
...|.. ..+...+++|||+||.| |.|.+.+|..+++++||+++|++|+........... .....+|.+++
T Consensus 29 ~~gC~~-~~~~~~~~~GkIvLv~r------g~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~I- 100 (122)
T cd04816 29 PAGCDA-SDYDGLDVKGAIVLVDR------GGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGVI- 100 (122)
T ss_pred ccCCCc-cccCCCCcCCeEEEEEC------CCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEEE-
Confidence 367864 34555679999999998 678899999999999999999999876221111111 13456898887
Q ss_pred ccchhHHHHHHHhhc
Q 044171 485 NMQSSMDLLEYYNSH 499 (813)
Q Consensus 485 ~~~~g~~~~~~~~~~ 499 (813)
+..+++.|++++...
T Consensus 101 s~~~G~~l~~~l~~g 115 (122)
T cd04816 101 TKAAGAALRRRLGAG 115 (122)
T ss_pred cHHHHHHHHHHHcCC
Confidence 668999999988655
|
This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa) | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00011 Score=67.23 Aligned_cols=85 Identities=15% Similarity=0.125 Sum_probs=62.6
Q ss_pred cccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEEEEeCCCCCCC-CCccc----cccCCcceE
Q 044171 407 LESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPDQDFS-PNKFK----DMALDVPGI 481 (813)
Q Consensus 407 ~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~-~~~~~----~~~~~ip~~ 481 (813)
.+.|.... ...+++|||+|++| |.|+|.+|..+|+++||.++|+||+...... ...+. .....||.+
T Consensus 21 ~~gC~~~~--~~~~~~g~I~Lv~R------G~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v 92 (118)
T cd02127 21 LEACEELR--NIHDINGNIALIER------GGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAA 92 (118)
T ss_pred cccCCCCC--CccccCCeEEEEEC------CCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEE
Confidence 35687433 24568999999998 7899999999999999999999998652111 11111 233468988
Q ss_pred EEcccchhHHHHHHHhhcC
Q 044171 482 ILNNMQSSMDLLEYYNSHT 500 (813)
Q Consensus 482 ~i~~~~~g~~~~~~~~~~~ 500 (813)
++ +..+|+.|++.+..+.
T Consensus 93 ~I-s~~dG~~L~~~l~~g~ 110 (118)
T cd02127 93 FL-LGKNGYMIRKTLERLG 110 (118)
T ss_pred Ee-cHHHHHHHHHHHHcCC
Confidence 87 6778899988877654
|
This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00014 Score=68.38 Aligned_cols=86 Identities=15% Similarity=0.200 Sum_probs=63.0
Q ss_pred cccCCCCCCc-CcccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEEEEeCCCCCCCCCcc-ccccCCcceEEEc
Q 044171 407 LESCQYPELF-IPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPDQDFSPNKF-KDMALDVPGIILN 484 (813)
Q Consensus 407 ~~~c~~~~~~-~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~-~~~~~~ip~~~i~ 484 (813)
.+.|...... ...+.+|+|+|+.| |.|+|.+|..+|+++||.++|+||+.........+ ......+|.++|
T Consensus 44 ~~gC~~~~~~~~~~~~~g~IaLV~R------G~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~I- 116 (138)
T cd02122 44 HYGCDPDTRFPIPPNGEPWIALIQR------GNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMI- 116 (138)
T ss_pred cCCCCCCccccCCccCCCeEEEEEC------CCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEE-
Confidence 4678755542 34578999999998 78999999999999999999999987511011111 122346887776
Q ss_pred ccchhHHHHHHHhhc
Q 044171 485 NMQSSMDLLEYYNSH 499 (813)
Q Consensus 485 ~~~~g~~~~~~~~~~ 499 (813)
+..+|+.|+.++..+
T Consensus 117 s~~~G~~l~~~l~~G 131 (138)
T cd02122 117 TNPKGMEILELLERG 131 (138)
T ss_pred cHHHHHHHHHHHHcC
Confidence 668999999988654
|
This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase |
| >cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR) | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00015 Score=67.19 Aligned_cols=86 Identities=13% Similarity=0.148 Sum_probs=62.6
Q ss_pred cccCCCCCCcC-cc----cccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEEEEeCCCCCCCCCcc--------cc
Q 044171 407 LESCQYPELFI-PA----LVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPDQDFSPNKF--------KD 473 (813)
Q Consensus 407 ~~~c~~~~~~~-~~----~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~--------~~ 473 (813)
.+.|....... +. ...++|+|++| |.|+|.+|+.+|+++||+++|++|+.+.+...+.. ..
T Consensus 22 ~~gC~~~~~~~~~~~~~~~~~~~IvLv~R------G~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~ 95 (127)
T cd02125 22 RTGCKEFDVFFKPKKSEPGRRPVILLLDR------GGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYI 95 (127)
T ss_pred cccCCCCcccccccccccCCCceEEEEEC------CCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccC
Confidence 45787665433 22 37889999998 78999999999999999999999987632211110 11
Q ss_pred ccCCcceEEEcccchhHHHHHHHhhc
Q 044171 474 MALDVPGIILNNMQSSMDLLEYYNSH 499 (813)
Q Consensus 474 ~~~~ip~~~i~~~~~g~~~~~~~~~~ 499 (813)
....||.+++ +..+|+.|+..+..+
T Consensus 96 ~~i~IP~v~I-s~~~G~~L~~~l~~g 120 (127)
T cd02125 96 EKITIPSALI-TKAFGEKLKKAISNG 120 (127)
T ss_pred CCceEeEEEE-CHHHHHHHHHHHhcC
Confidence 2346888888 668899999887654
|
This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic |
| >cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins | Back alignment and domain information |
|---|
Probab=97.72 E-value=9.9e-05 Score=68.51 Aligned_cols=84 Identities=21% Similarity=0.254 Sum_probs=61.7
Q ss_pred cccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEEEEeCCCCCCC---CC-c--ccc---ccCC
Q 044171 407 LESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPDQDFS---PN-K--FKD---MALD 477 (813)
Q Consensus 407 ~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~---~~-~--~~~---~~~~ 477 (813)
...|.... ....++|||+|++| |.|+|.+|..+|+++||.++|++|+...... .+ . ... ....
T Consensus 27 ~~gC~~~~--~~~~~~gkIaLv~R------G~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~ 98 (126)
T cd02126 27 YRACSEIT--NAEEVKGKIAIMER------GDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVT 98 (126)
T ss_pred hhcccCCC--CccccCceEEEEEC------CCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCe
Confidence 35686432 25568999999999 7899999999999999999999987653210 11 1 111 2457
Q ss_pred cceEEEcccchhHHHHHHHhhc
Q 044171 478 VPGIILNNMQSSMDLLEYYNSH 499 (813)
Q Consensus 478 ip~~~i~~~~~g~~~~~~~~~~ 499 (813)
||.+++ +..+|+.|++++..+
T Consensus 99 IP~v~I-~~~dG~~L~~~l~~~ 119 (126)
T cd02126 99 IPVVFL-FSKEGSKLLAAIKEH 119 (126)
T ss_pred EEEEEE-EHHHHHHHHHHHHhC
Confidence 899887 678899999888754
|
This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr |
| >cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1 | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00012 Score=66.71 Aligned_cols=83 Identities=12% Similarity=0.086 Sum_probs=61.6
Q ss_pred cccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEEEEeCCCCC-CCCCcc--ccccCCcceEEE
Q 044171 407 LESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPDQD-FSPNKF--KDMALDVPGIIL 483 (813)
Q Consensus 407 ~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~-~~~~~~--~~~~~~ip~~~i 483 (813)
.+.|... +..+++|||+|+.| |.|+|.+|+.+++++||+++|++|+.... ...+.. ......||.+++
T Consensus 27 ~~gC~~~---~~~~l~gkIvLV~R------G~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~I 97 (117)
T cd04813 27 TDACSLQ---EHAEIDGKVALVLR------GGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFT 97 (117)
T ss_pred CCCCCCC---CcCCcCCeEEEEEC------CCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEE
Confidence 4678644 45778999999998 78999999999999999999999987621 111111 123456899888
Q ss_pred cccchhHHHHHHHhhc
Q 044171 484 NNMQSSMDLLEYYNSH 499 (813)
Q Consensus 484 ~~~~~g~~~~~~~~~~ 499 (813)
+.++++.|..+....
T Consensus 98 -s~~~g~~L~~l~~~~ 112 (117)
T cd04813 98 -SRTSYHLLSSLLPKS 112 (117)
T ss_pred -cHHHHHHHHHhcccc
Confidence 678888888876543
|
A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid |
| >cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00017 Score=67.05 Aligned_cols=82 Identities=12% Similarity=0.039 Sum_probs=59.9
Q ss_pred cccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEEEEeCCCCCCCCCccccccCCcceEEEccc
Q 044171 407 LESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNM 486 (813)
Q Consensus 407 ~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~ 486 (813)
.+.|....... .+++|||+|++| |.|.+.+|..+++++||+++|+||+........ ......+|.+.+ .
T Consensus 41 ~~gC~~~~~~~-~~~~g~IaLv~r------g~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~--~~~~~~~~~~~~--~ 109 (129)
T cd02124 41 DDACQPLPDDT-PDLSGYIVLVRR------GTCTFATKAANAAAKGAKYVLIYNNGSGPTDQV--GSDADSIIAAVT--P 109 (129)
T ss_pred cccCcCCCccc-ccccCeEEEEEC------CCCCHHHHHHHHHHcCCcEEEEEECCCCccccc--CCCCcceeeEEe--H
Confidence 46787554322 368999999998 679999999999999999999999876322211 222334565554 8
Q ss_pred chhHHHHHHHhhc
Q 044171 487 QSSMDLLEYYNSH 499 (813)
Q Consensus 487 ~~g~~~~~~~~~~ 499 (813)
.+|+.|++.+..+
T Consensus 110 ~~G~~l~~~l~~G 122 (129)
T cd02124 110 EDGEAWIDALAAG 122 (129)
T ss_pred HHHHHHHHHHhcC
Confidence 8999999887644
|
This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10 | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00016 Score=68.32 Aligned_cols=81 Identities=10% Similarity=0.208 Sum_probs=60.9
Q ss_pred cccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEEEEeCCCCCCCCCccc----cccCCcceEE
Q 044171 407 LESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPDQDFSPNKFK----DMALDVPGII 482 (813)
Q Consensus 407 ~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~----~~~~~ip~~~ 482 (813)
.+.|.... .+++|||+|+.| |.|+|.+|..+++++||+++|+||+.... ..+... .....||.++
T Consensus 48 ~~gC~~~~----~~~~g~IvLV~R------G~C~F~~K~~nA~~aGA~avIv~n~~~~~-~~~~~~~~~~~~~~~IP~v~ 116 (139)
T cd02132 48 LDCCSPST----SKLSGSIALVER------GECAFTEKAKIAEAGGASALLIINDQEEL-YKMVCEDNDTSLNISIPVVM 116 (139)
T ss_pred ccccCCCC----cccCCeEEEEEC------CCCCHHHHHHHHHHcCCcEEEEEECCCcc-cccccCCCCCCCCCcEeEEE
Confidence 35687543 368999999998 78999999999999999999999987521 222111 1135789776
Q ss_pred EcccchhHHHHHHHhhc
Q 044171 483 LNNMQSSMDLLEYYNSH 499 (813)
Q Consensus 483 i~~~~~g~~~~~~~~~~ 499 (813)
| +..+|+.|++++...
T Consensus 117 I-s~~~G~~L~~~l~~g 132 (139)
T cd02132 117 I-PQSAGDALNKSLDQG 132 (139)
T ss_pred e-cHHHHHHHHHHHHcC
Confidence 6 778999999988654
|
This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00015 Score=69.64 Aligned_cols=86 Identities=15% Similarity=0.197 Sum_probs=63.8
Q ss_pred cccCCCCCCc--CcccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEEEEeCCCCCCCCCcccc---ccCCcceE
Q 044171 407 LESCQYPELF--IPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPDQDFSPNKFKD---MALDVPGI 481 (813)
Q Consensus 407 ~~~c~~~~~~--~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~---~~~~ip~~ 481 (813)
.+.|...... ......|||+|+.| |.|+|.+|+.+|+++||.++|++|+.......+.... ....||.+
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~R------G~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v 123 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRR------GNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSV 123 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEEC------CCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEE
Confidence 3567644432 33678999999998 7899999999999999999999998753222222111 24579999
Q ss_pred EEcccchhHHHHHHHhhc
Q 044171 482 ILNNMQSSMDLLEYYNSH 499 (813)
Q Consensus 482 ~i~~~~~g~~~~~~~~~~ 499 (813)
++ +.++|+.|..++...
T Consensus 124 ~I-s~~dg~~L~~~l~~~ 140 (153)
T cd02123 124 FV-GKSTGEILKKYASYE 140 (153)
T ss_pred Ee-eHHHHHHHHHHHhcC
Confidence 98 678889998888755
|
This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce |
| >cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1 | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00022 Score=65.58 Aligned_cols=83 Identities=13% Similarity=0.200 Sum_probs=61.2
Q ss_pred cccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEEEEeCCCCCCCCCccc--cccCCcceEEEc
Q 044171 407 LESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPDQDFSPNKFK--DMALDVPGIILN 484 (813)
Q Consensus 407 ~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~--~~~~~ip~~~i~ 484 (813)
...|.+... ..+++|||+||.| +.|++.+|..+++++||.++|++++.... ....+. .....+|.+++
T Consensus 27 ~~~C~~~~~--~~~v~GkIvL~~r------g~c~f~~k~~~a~~aGA~gvIi~~~~~~~-~~~~~~~~~~~~~iP~v~V- 96 (118)
T cd04818 27 TDGCTAFTN--AAAFAGKIALIDR------GTCNFTVKVLNAQNAGAIAVIVANNVAGG-APITMGGDDPDITIPAVMI- 96 (118)
T ss_pred ccccCCCCc--CCCCCCEEEEEEC------CCCCHHHHHHHHHHCCCeEEEEEECCCCC-cceeccCCCCCCEEeEEEe-
Confidence 457865443 3459999999987 56889999999999999999999987621 111111 12346898887
Q ss_pred ccchhHHHHHHHhhc
Q 044171 485 NMQSSMDLLEYYNSH 499 (813)
Q Consensus 485 ~~~~g~~~~~~~~~~ 499 (813)
+.+++..|+.|++..
T Consensus 97 ~~~~g~~l~~~l~~g 111 (118)
T cd04818 97 SQADGDALKAALAAG 111 (118)
T ss_pred cHHHHHHHHHHHhcC
Confidence 778899999998754
|
A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup. |
| >cd00538 PA PA: Protease-associated (PA) domain | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0004 Score=64.41 Aligned_cols=86 Identities=17% Similarity=0.204 Sum_probs=62.6
Q ss_pred cccCCCCC-CcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEEEEeCCCCCCCCCccc---cccCCcceEE
Q 044171 407 LESCQYPE-LFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPDQDFSPNKFK---DMALDVPGII 482 (813)
Q Consensus 407 ~~~c~~~~-~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~---~~~~~ip~~~ 482 (813)
...|.... .+...+++|||+||.+ +.|.+.+|..+++++||+|+|++++........... .....+|.++
T Consensus 30 ~~~C~~~~~~~~~~~~~GkIvl~~~------g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~ 103 (126)
T cd00538 30 LVGCGYGTTDDSGADVKGKIVLVRR------GGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVG 103 (126)
T ss_pred eEEEecCcccccCCCccceEEEEEC------CCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEE
Confidence 34575322 2556779999999987 568899999999999999999999875211111111 2345789888
Q ss_pred EcccchhHHHHHHHhhc
Q 044171 483 LNNMQSSMDLLEYYNSH 499 (813)
Q Consensus 483 i~~~~~g~~~~~~~~~~ 499 (813)
+ +.++++.|+.++.+.
T Consensus 104 i-s~~~g~~l~~~~~~~ 119 (126)
T cd00538 104 I-SYADGEALLSLLEAG 119 (126)
T ss_pred e-CHHHHHHHHHHHhcC
Confidence 8 779999999998754
|
The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g |
| >cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2 | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0014 Score=61.02 Aligned_cols=78 Identities=13% Similarity=0.103 Sum_probs=57.5
Q ss_pred CcCcccccceEEEEeeccCCCCCch--hHHHHHHHHHhcCceEEEEEeCCCCCCCCCc---c-ccccCCcceEEEcccch
Q 044171 415 LFIPALVRGKLIICTYSFDFENDDA--TIATVADNIKKIEAAGFILRMDPDQDFSPNK---F-KDMALDVPGIILNNMQS 488 (813)
Q Consensus 415 ~~~~~~~~Gkivl~~~~~~~~~g~~--~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~---~-~~~~~~ip~~~i~~~~~ 488 (813)
++...+++|||+++.+ +.+ ++..|+.+++++||+++|++|+..+...... . ......||.+.+ +.++
T Consensus 37 d~~~~~v~GkIvlv~~------g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~~~~~~~IP~v~I-s~ed 109 (127)
T cd04819 37 DFDGLDLEGKIAVVKR------DDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTEDGPPSPIPAASV-SGED 109 (127)
T ss_pred HcCCCCCCCeEEEEEc------CCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccccccCCCCCCCCEEEE-eHHH
Confidence 4445679999999998 445 7889999999999999999987653322111 1 122356999987 7788
Q ss_pred hHHHHHHHhhc
Q 044171 489 SMDLLEYYNSH 499 (813)
Q Consensus 489 g~~~~~~~~~~ 499 (813)
+..|...++.+
T Consensus 110 g~~L~~~l~~g 120 (127)
T cd04819 110 GLRLARVAERN 120 (127)
T ss_pred HHHHHHHHhcC
Confidence 99998887653
|
A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola |
| >PF14874 PapD-like: Flagellar-associated PapD-like | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.042 Score=48.79 Aligned_cols=83 Identities=20% Similarity=0.169 Sum_probs=63.5
Q ss_pred CccEEEEEEEEecCCCCeeEEEEEeCCCCcEEEEecCeEEEecCcEEEEEEEEEEecCCCCeEEEEEEEEeCCcceEEEe
Q 044171 725 VGSRKVIRRVRNVSSANETYTVTVKEPSGVKVSVSPQVFKIRGLASRELKIVLKATNSTRAYSFGAMVLQGNNNHIIRIP 804 (813)
Q Consensus 725 ~~~~~~~~tv~N~~~~~~ty~~~~~~~~g~~v~~~~~~~~v~~g~~~~~~vt~~~~~~~~~~~~G~i~~~~~~~~~l~~P 804 (813)
+.....+++|+|.|..+..|++.......-.+++++..=.|+||++.++.|+|.++... +.+++.|.+.-. +..+.+|
T Consensus 19 g~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~PG~~~~~~V~~~~~~~~-g~~~~~l~i~~e-~~~~~i~ 96 (102)
T PF14874_consen 19 GQTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLAPGESVELEVTFSPTKPL-GDYEGSLVITTE-GGSFEIP 96 (102)
T ss_pred CCEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEECCCCEEEEEEEEEeCCCC-ceEEEEEEEEEC-CeEEEEE
Confidence 44566778999999999999987654234467777777789999999999999976543 457899999865 4578888
Q ss_pred EEEEE
Q 044171 805 IAVYV 809 (813)
Q Consensus 805 ~~~~~ 809 (813)
.-..+
T Consensus 97 v~a~~ 101 (102)
T PF14874_consen 97 VKAEV 101 (102)
T ss_pred EEEEE
Confidence 76553
|
|
| >PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.016 Score=53.16 Aligned_cols=70 Identities=17% Similarity=0.281 Sum_probs=53.0
Q ss_pred CccEEEEEEEEecCCCCeeEEEEEeC----CCC--------------cE------EEEecCeEEEecCcEEEEEEEEEEe
Q 044171 725 VGSRKVIRRVRNVSSANETYTVTVKE----PSG--------------VK------VSVSPQVFKIRGLASRELKIVLKAT 780 (813)
Q Consensus 725 ~~~~~~~~tv~N~~~~~~ty~~~~~~----~~g--------------~~------v~~~~~~~~v~~g~~~~~~vt~~~~ 780 (813)
+.++++.++|+|.++++.+|.+.... ..| +. +++ |..++|+||++++++++|+.|
T Consensus 26 ~q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~-~~~Vtl~~~~sk~V~~~i~~P 104 (121)
T PF06030_consen 26 GQKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKI-PKEVTLPPNESKTVTFTIKMP 104 (121)
T ss_pred CCEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccC-CcEEEECCCCEEEEEEEEEcC
Confidence 56788999999999999999987542 111 11 233 456999999999999999999
Q ss_pred cCC-CCeEEEEEEEEe
Q 044171 781 NST-RAYSFGAMVLQG 795 (813)
Q Consensus 781 ~~~-~~~~~G~i~~~~ 795 (813)
... .+.+-|-|.|..
T Consensus 105 ~~~f~G~ilGGi~~~e 120 (121)
T PF06030_consen 105 KKAFDGIILGGIYFSE 120 (121)
T ss_pred CCCcCCEEEeeEEEEe
Confidence 863 556668888763
|
|
| >PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.013 Score=49.27 Aligned_cols=60 Identities=18% Similarity=0.208 Sum_probs=38.4
Q ss_pred CccEEEEEEEEecCCCC-eeEEEEEeCCCCcEEEEecCeE-EEecCcEEEEEEEEEEecCCC
Q 044171 725 VGSRKVIRRVRNVSSAN-ETYTVTVKEPSGVKVSVSPQVF-KIRGLASRELKIVLKATNSTR 784 (813)
Q Consensus 725 ~~~~~~~~tv~N~~~~~-~ty~~~~~~~~g~~v~~~~~~~-~v~~g~~~~~~vt~~~~~~~~ 784 (813)
+++.+++++|+|.|..+ ...++++..|.|-++..++.++ .|+||++++++++|++|....
T Consensus 4 G~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~a~ 65 (78)
T PF10633_consen 4 GETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPADAA 65 (78)
T ss_dssp TEEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-TT--
T ss_pred CCEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCCCCC
Confidence 34677888999999765 4588888889998877777766 689999999999999998753
|
It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A. |
| >PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.066 Score=49.04 Aligned_cols=56 Identities=16% Similarity=0.291 Sum_probs=41.1
Q ss_pred EEEEEEEEecCCCCeeEEEEEeCCCCcEEEEecCeEEEecCcEEEEEEEEEEecCC
Q 044171 728 RKVIRRVRNVSSANETYTVTVKEPSGVKVSVSPQVFKIRGLASRELKIVLKATNST 783 (813)
Q Consensus 728 ~~~~~tv~N~~~~~~ty~~~~~~~~g~~v~~~~~~~~v~~g~~~~~~vt~~~~~~~ 783 (813)
-.++++|.|.+.++.+|++++..++|+++......++|+||+++++.|.+.+|...
T Consensus 33 N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v~~g~~~~~~v~v~~p~~~ 88 (118)
T PF11614_consen 33 NQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITVPPGETREVPVFVTAPPDA 88 (118)
T ss_dssp EEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE-TT-EEEEEEEEEE-GGG
T ss_pred EEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEECCCCEEEEEEEEEECHHH
Confidence 34677999999999999999998889999665689999999999999999998864
|
|
| >cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2 | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.042 Score=51.58 Aligned_cols=84 Identities=12% Similarity=0.072 Sum_probs=55.1
Q ss_pred CcCcccccceEEEEeeccCCCCCchhHHHH-------HHHHHhcCceEEEEEeCCCC----CCCCCccc-cccCCcceEE
Q 044171 415 LFIPALVRGKLIICTYSFDFENDDATIATV-------ADNIKKIEAAGFILRMDPDQ----DFSPNKFK-DMALDVPGII 482 (813)
Q Consensus 415 ~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~-------~~~~~~~Ga~g~i~~n~~~~----~~~~~~~~-~~~~~ip~~~ 482 (813)
.+...+++||||++.++.+.......+..| ...++++||.++|++|.... ...+.... .....||.+.
T Consensus 32 ~~~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~ 111 (134)
T cd04815 32 AAPAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAA 111 (134)
T ss_pred hcchhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEE
Confidence 445668999999998843211111166666 68999999999999996431 11232222 2335699999
Q ss_pred EcccchhHHHHHHHhhc
Q 044171 483 LNNMQSSMDLLEYYNSH 499 (813)
Q Consensus 483 i~~~~~g~~~~~~~~~~ 499 (813)
+ +.+++..|...+...
T Consensus 112 i-s~ed~~~L~r~l~~g 127 (134)
T cd04815 112 I-SVEDADMLERLAARG 127 (134)
T ss_pred e-chhcHHHHHHHHhCC
Confidence 7 677888887776644
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a |
| >cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1 | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.1 Score=49.11 Aligned_cols=50 Identities=12% Similarity=0.107 Sum_probs=38.1
Q ss_pred CCcCcccccceEEEEeeccCCC------CCc------hhHHHHHHHHHhcCceEEEEEeCCC
Q 044171 414 ELFIPALVRGKLIICTYSFDFE------NDD------ATIATVADNIKKIEAAGFILRMDPD 463 (813)
Q Consensus 414 ~~~~~~~~~Gkivl~~~~~~~~------~g~------~~~~~~~~~~~~~Ga~g~i~~n~~~ 463 (813)
.++...+++||||++.++.... .+. ..+..|..+++++||.|+|++++..
T Consensus 39 dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii~~~~ 100 (142)
T cd04814 39 DDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIVHELA 100 (142)
T ss_pred hhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEEeCCC
Confidence 4677788999999998853210 011 1577899999999999999999875
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a |
| >cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR) | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.046 Score=53.66 Aligned_cols=40 Identities=23% Similarity=0.391 Sum_probs=35.6
Q ss_pred cccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEEEEeCCC
Q 044171 418 PALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPD 463 (813)
Q Consensus 418 ~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 463 (813)
..+++|||+|+.+ |.|.+.+|+.+|+++||+|+|+|++..
T Consensus 51 gv~v~GkIvLvr~------G~~~~~~Kv~~A~~~GA~gvIiy~Dp~ 90 (183)
T cd02128 51 GVSVNGSVVLVRA------GKISFAEKVANAEKLGAVGVLIYPDPA 90 (183)
T ss_pred CCCCCCeEEEEEC------CCCCHHHHHHHHHHCCCEEEEEecCHH
Confidence 4578999999998 567889999999999999999999864
|
This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra |
| >cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1 | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.29 Score=45.81 Aligned_cols=50 Identities=18% Similarity=0.138 Sum_probs=38.2
Q ss_pred CCcCcccccceEEEEeeccCCCCC------chhHHHHHHHHHhcCceEEEEEeCCC
Q 044171 414 ELFIPALVRGKLIICTYSFDFEND------DATIATVADNIKKIEAAGFILRMDPD 463 (813)
Q Consensus 414 ~~~~~~~~~Gkivl~~~~~~~~~g------~~~~~~~~~~~~~~Ga~g~i~~n~~~ 463 (813)
.++...+++|||||+.++.....+ ...+..|..+|.++||.++|++++..
T Consensus 41 ~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~ 96 (137)
T cd04820 41 DDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPR 96 (137)
T ss_pred hhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCc
Confidence 456677899999999985321111 12477899999999999999999875
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3 | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.098 Score=49.85 Aligned_cols=50 Identities=20% Similarity=0.203 Sum_probs=39.2
Q ss_pred CCcCcccccceEEEEeeccC------------CCCCchhHHHHHHHHHhcCceEEEEEeCCC
Q 044171 414 ELFIPALVRGKLIICTYSFD------------FENDDATIATVADNIKKIEAAGFILRMDPD 463 (813)
Q Consensus 414 ~~~~~~~~~Gkivl~~~~~~------------~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 463 (813)
.++...+++|||||+.++.. .....|++..|..+|.+.||+++|+|++..
T Consensus 39 ~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~d~~ 100 (151)
T cd04822 39 DDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVNGPN 100 (151)
T ss_pred hhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEeCCc
Confidence 45667789999999987521 011236788999999999999999999876
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.66 Score=43.21 Aligned_cols=66 Identities=18% Similarity=0.279 Sum_probs=52.3
Q ss_pred EEEEEEecCCCC-eeEEEEEeCCCCcEEEEecCeEEEecCcEEEEEEEEEEecCCCCeEEEEEEEEe
Q 044171 730 VIRRVRNVSSAN-ETYTVTVKEPSGVKVSVSPQVFKIRGLASRELKIVLKATNSTRAYSFGAMVLQG 795 (813)
Q Consensus 730 ~~~tv~N~~~~~-~ty~~~~~~~~g~~v~~~~~~~~v~~g~~~~~~vt~~~~~~~~~~~~G~i~~~~ 795 (813)
+.+.|.|..+.. +..+++...-.+.++--.|..+++.|++.+++..+|++.+...++++|+|++..
T Consensus 73 LDvllvNqT~~tLqNl~vElat~gdLklve~p~~~tL~P~~~~~i~~~iKVsStetGvIfG~I~Yd~ 139 (140)
T PF07718_consen 73 LDVLLVNQTNETLQNLTVELATLGDLKLVERPQPITLAPHGFARIKATIKVSSTETGVIFGNIVYDG 139 (140)
T ss_pred EEEEEEeCChhhhhcEEEEEEecCCcEEccCCCceeeCCCcEEEEEEEEEEEeccCCEEEEEEEEec
Confidence 344567776532 445555555567888888999999999999999999999999999999999864
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat |
| >COG1470 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.05 E-value=1.1 Score=49.66 Aligned_cols=59 Identities=8% Similarity=0.217 Sum_probs=49.4
Q ss_pred CccEEEEEEEEecCCCCeeEEEEEe-CCCCcEEEEe-----cCeEEEecCcEEEEEEEEEEecCC
Q 044171 725 VGSRKVIRRVRNVSSANETYTVTVK-EPSGVKVSVS-----PQVFKIRGLASRELKIVLKATNST 783 (813)
Q Consensus 725 ~~~~~~~~tv~N~~~~~~ty~~~~~-~~~g~~v~~~-----~~~~~v~~g~~~~~~vt~~~~~~~ 783 (813)
..+..|+++|.|.|..+.+|.++.. .|+|-+..|. -+++.|.||++++|+|.+.++...
T Consensus 283 ~~t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL~~gE~kdvtleV~ps~na 347 (513)
T COG1470 283 STTASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKLKPGEEKDVTLEVYPSLNA 347 (513)
T ss_pred CCceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEecCCCceEEEEEEecCCCC
Confidence 3466888999999999999999998 7887665553 237899999999999999998765
|
|
| >COG1470 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.45 E-value=0.73 Score=50.88 Aligned_cols=71 Identities=13% Similarity=0.176 Sum_probs=54.9
Q ss_pred CccEEEEEEEEecCCCCee-EEEEEeCCCCcEEEEecCeE-EEecCcEEEEEEEEEEecCC-CCeEEEEEEEEe
Q 044171 725 VGSRKVIRRVRNVSSANET-YTVTVKEPSGVKVSVSPQVF-KIRGLASRELKIVLKATNST-RAYSFGAMVLQG 795 (813)
Q Consensus 725 ~~~~~~~~tv~N~~~~~~t-y~~~~~~~~g~~v~~~~~~~-~v~~g~~~~~~vt~~~~~~~-~~~~~G~i~~~~ 795 (813)
+..+++...|.|.|+.+.| -++++..|.|-++++++.++ .|+||+++++++|+++|..+ .+-|.=.|+-++
T Consensus 396 Gee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGdY~i~i~~ks 469 (513)
T COG1470 396 GEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGDYRITITAKS 469 (513)
T ss_pred CccceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCCCCCCcEEEEEEEee
Confidence 3457788899999987644 67888899999999999877 56899999999999999875 233434444443
|
|
| >cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2) | Back alignment and domain information |
|---|
Probab=92.34 E-value=0.18 Score=47.51 Aligned_cols=39 Identities=15% Similarity=0.231 Sum_probs=33.8
Q ss_pred ccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEEEEeCCC
Q 044171 419 ALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPD 463 (813)
Q Consensus 419 ~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 463 (813)
.+++|||+|+.. |....-.|+.+|+..||.|+|+|.++.
T Consensus 37 V~v~GkIvi~Ry------G~~~RG~Kv~~A~~~GA~GviIYsDP~ 75 (153)
T cd02131 37 MNVTNQIALLKL------GQAPLLYKLSLLEEAGFGGVLLYVDPC 75 (153)
T ss_pred CCccceEEEEec------cCcchHHHHHHHHHCCCeEEEEecChh
Confidence 569999999988 445567899999999999999999875
|
This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins | Back alignment and domain information |
|---|
Probab=91.78 E-value=1.5 Score=37.85 Aligned_cols=64 Identities=17% Similarity=0.176 Sum_probs=43.8
Q ss_pred ccEEEEEEEEecCCCCeeEEEEEeCCCCcEEEEecCeEEEecCcEEEEEEEEEEecCCCCeEEEEEEEEeCCc
Q 044171 726 GSRKVIRRVRNVSSANETYTVTVKEPSGVKVSVSPQVFKIRGLASRELKIVLKATNSTRAYSFGAMVLQGNNN 798 (813)
Q Consensus 726 ~~~~~~~tv~N~~~~~~ty~~~~~~~~g~~v~~~~~~~~v~~g~~~~~~vt~~~~~~~~~~~~G~i~~~~~~~ 798 (813)
.+..+.++++|.|....++++.-.. .-.-.|.+++|+||++.++.+.+. ....||+ |+++..++
T Consensus 18 ~~g~l~l~l~N~g~~~~~~~v~~~~----y~~~~~~~~~v~ag~~~~~~w~l~---~s~gwYD--l~v~~~~~ 81 (89)
T PF05506_consen 18 ATGNLRLTLSNPGSAAVTFTVYDNA----YGGGGPWTYTVAAGQTVSLTWPLA---ASGGWYD--LTVTGPNG 81 (89)
T ss_pred CCCEEEEEEEeCCCCcEEEEEEeCC----cCCCCCEEEEECCCCEEEEEEeec---CCCCcEE--EEEEcCCC
Confidence 3457888999999999988887421 111246789999999988887762 2346775 55554443
|
; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process |
| >TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG | Back alignment and domain information |
|---|
Probab=90.82 E-value=1.1 Score=50.50 Aligned_cols=55 Identities=13% Similarity=0.226 Sum_probs=48.8
Q ss_pred EEEEEEEEecCCCCeeEEEEEeCCCCcEEEEecCeEEEecCcEEEEEEEEEEecC
Q 044171 728 RKVIRRVRNVSSANETYTVTVKEPSGVKVSVSPQVFKIRGLASRELKIVLKATNS 782 (813)
Q Consensus 728 ~~~~~tv~N~~~~~~ty~~~~~~~~g~~v~~~~~~~~v~~g~~~~~~vt~~~~~~ 782 (813)
..+++.|.|.++++.+|++++...++++++..++.++|+||+++++.|++.++..
T Consensus 348 N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v~~g~~~~~~v~v~~~~~ 402 (434)
T TIGR02745 348 NTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHVKAGEKVKLPVFLRTPPD 402 (434)
T ss_pred EEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEECCCCEEEEEEEEEechh
Confidence 4567799999999999999999888999988656899999999999999999854
|
Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum. |
| >cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like | Back alignment and domain information |
|---|
Probab=90.81 E-value=0.35 Score=49.15 Aligned_cols=40 Identities=28% Similarity=0.385 Sum_probs=34.6
Q ss_pred cccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEEEEeCCC
Q 044171 418 PALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPD 463 (813)
Q Consensus 418 ~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 463 (813)
..+++|||||+.+ |.+...+|+.+|+.+||+|+|+|++..
T Consensus 67 gvdv~GKIvLvr~------G~~~~~~Kv~~A~~~GA~gVIiy~Dp~ 106 (220)
T cd02121 67 GIDVKGKIVIARY------GGIFRGLKVKNAQLAGAVGVIIYSDPA 106 (220)
T ss_pred CCCCCCeEEEEEC------CCccHHHHHHHHHHcCCEEEEEEeCch
Confidence 5679999999987 455667899999999999999999875
|
This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower |
| >PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors | Back alignment and domain information |
|---|
Probab=89.85 E-value=3 Score=38.26 Aligned_cols=68 Identities=18% Similarity=0.197 Sum_probs=49.0
Q ss_pred cEEEEEEEEecCCCCeeEEEEEeC---CCC----cEEEEecCeEEEecCcEEEEEEEEEEec-CCCCeEEEEEEEEe
Q 044171 727 SRKVIRRVRNVSSANETYTVTVKE---PSG----VKVSVSPQVFKIRGLASRELKIVLKATN-STRAYSFGAMVLQG 795 (813)
Q Consensus 727 ~~~~~~tv~N~~~~~~ty~~~~~~---~~g----~~v~~~~~~~~v~~g~~~~~~vt~~~~~-~~~~~~~G~i~~~~ 795 (813)
....+++|+|.++.+..+++.+.. ... -.+-++|..++++||+++.|.| +..+. ..+....-+|.++.
T Consensus 15 ~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~pg~~q~vRv-~~~~~~~~~~E~~yrl~~~~ 90 (122)
T PF00345_consen 15 QRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEPGESQTVRV-YRGSKLPIDRESLYRLSFRE 90 (122)
T ss_dssp SSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEETTEEEEEEE-EECSGS-SSS-EEEEEEEEE
T ss_pred CCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEeCCCCcEEEEE-EecCCCCCCceEEEEEEEEE
Confidence 345567999999988888887764 111 1577899999999999999999 76443 23444456777774
|
Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B .... |
| >KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.39 E-value=1.4 Score=48.88 Aligned_cols=71 Identities=14% Similarity=0.233 Sum_probs=53.0
Q ss_pred cccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEEEEeCCCCC-C--CCCccccccCCcceEEEcccchhHHHHH
Q 044171 418 PALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPDQD-F--SPNKFKDMALDVPGIILNNMQSSMDLLE 494 (813)
Q Consensus 418 ~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~-~--~~~~~~~~~~~ip~~~i~~~~~g~~~~~ 494 (813)
....+||+++..| |+|.|.+|+..|+.+||.++++.|+.... . .+.........||..++ +.++++.+..
T Consensus 91 ~~kl~~~~~~v~R------GnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi-~~~~~~~l~~ 163 (541)
T KOG2442|consen 91 QSKLSGKVALVFR------GNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMI-SYSDGRDLNK 163 (541)
T ss_pred CccccceeEEEec------ccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEE-EhhhHHHHHh
Confidence 4568999999998 89999999999999999999999985310 1 12223445678999988 4556666655
Q ss_pred H
Q 044171 495 Y 495 (813)
Q Consensus 495 ~ 495 (813)
.
T Consensus 164 ~ 164 (541)
T KOG2442|consen 164 S 164 (541)
T ss_pred h
Confidence 3
|
|
| >PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm | Back alignment and domain information |
|---|
Probab=84.89 E-value=3.6 Score=36.65 Aligned_cols=55 Identities=16% Similarity=0.188 Sum_probs=41.5
Q ss_pred ccEEEEEEEEecCCCCeeEEEEEeCCCCcEEEEecCeEEEecCcEEEEEEEEEEecC
Q 044171 726 GSRKVIRRVRNVSSANETYTVTVKEPSGVKVSVSPQVFKIRGLASRELKIVLKATNS 782 (813)
Q Consensus 726 ~~~~~~~tv~N~~~~~~ty~~~~~~~~g~~v~~~~~~~~v~~g~~~~~~vt~~~~~~ 782 (813)
......++|+|.++....|.+....+. ...+.|..-.|.||++.++.|++.....
T Consensus 18 ~~~~~~l~l~N~s~~~i~fKiktt~~~--~y~v~P~~G~i~p~~~~~i~I~~~~~~~ 72 (109)
T PF00635_consen 18 KQQSCELTLTNPSDKPIAFKIKTTNPN--RYRVKPSYGIIEPGESVEITITFQPFDF 72 (109)
T ss_dssp S-EEEEEEEEE-SSSEEEEEEEES-TT--TEEEESSEEEE-TTEEEEEEEEE-SSST
T ss_pred ceEEEEEEEECCCCCcEEEEEEcCCCc--eEEecCCCEEECCCCEEEEEEEEEeccc
Confidence 345566799999999999999988776 4567799999999999999999988543
|
These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A .... |
| >PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins | Back alignment and domain information |
|---|
Probab=84.24 E-value=6.9 Score=33.96 Aligned_cols=64 Identities=17% Similarity=0.118 Sum_probs=39.8
Q ss_pred CccEEEEEEEEecCCCC-eeEEEEEeCCCCcEEEEecCeE-EEecCcEEEEEEEEEEecCCCCeEEEEEEE
Q 044171 725 VGSRKVIRRVRNVSSAN-ETYTVTVKEPSGVKVSVSPQVF-KIRGLASRELKIVLKATNSTRAYSFGAMVL 793 (813)
Q Consensus 725 ~~~~~~~~tv~N~~~~~-~ty~~~~~~~~g~~v~~~~~~~-~v~~g~~~~~~vt~~~~~~~~~~~~G~i~~ 793 (813)
+...+++++|+|.|... ..+++.+... |..+ ....+ .|+||++.++++++.++. .+.+.=.+.+
T Consensus 18 g~~~~i~~~V~N~G~~~~~~~~v~~~~~-~~~~--~~~~i~~L~~g~~~~v~~~~~~~~--~G~~~i~~~i 83 (101)
T PF07705_consen 18 GEPVTITVTVKNNGTADAENVTVRLYLD-GNSV--STVTIPSLAPGESETVTFTWTPPS--PGSYTIRVVI 83 (101)
T ss_dssp TSEEEEEEEEEE-SSS-BEEEEEEEEET-TEEE--EEEEESEB-TTEEEEEEEEEE-SS---CEEEEEEEE
T ss_pred CCEEEEEEEEEECCCCCCCCEEEEEEEC-Ccee--ccEEECCcCCCcEEEEEEEEEeCC--CCeEEEEEEE
Confidence 45678889999999864 5566666543 3343 33345 779999999999999982 2344434444
|
; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A. |
| >smart00635 BID_2 Bacterial Ig-like domain 2 | Back alignment and domain information |
|---|
Probab=83.79 E-value=4.6 Score=34.08 Aligned_cols=45 Identities=13% Similarity=0.250 Sum_probs=36.5
Q ss_pred EEEEecCeEEEecCcEEEEEEEEEEecCCCCeEEEEEEEEeCCcceEE
Q 044171 755 KVSVSPQVFKIRGLASRELKIVLKATNSTRAYSFGAMVLQGNNNHIIR 802 (813)
Q Consensus 755 ~v~~~~~~~~v~~g~~~~~~vt~~~~~~~~~~~~G~i~~~~~~~~~l~ 802 (813)
.|+++|..++|+.|++..|++++++....+ ...+.|++++....+
T Consensus 4 ~i~i~p~~~~l~~G~~~~l~a~~~~~~~~~---~~~v~w~Ssn~~vat 48 (81)
T smart00635 4 SVTVTPTTASVKKGLTLQLTATVTPSSAKV---TGKVTWTSSNPSVAT 48 (81)
T ss_pred EEEEeCCeeEEeCCCeEEEEEEEECCCCCc---cceEEEEECCCcEEE
Confidence 578899999999999999999976654432 688999988776666
|
|
| >KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.16 E-value=2.5 Score=45.65 Aligned_cols=72 Identities=10% Similarity=0.048 Sum_probs=50.0
Q ss_pred ccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEEEEeCCCCC-CCCCccccccCCcceEEEcccchhHHHHHHHh
Q 044171 419 ALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPDQD-FSPNKFKDMALDVPGIILNNMQSSMDLLEYYN 497 (813)
Q Consensus 419 ~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~-~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~ 497 (813)
......++|+.| |.|+|.+|+.+|+.+|.+++|+||+.... ..-+........++.+++ +...|+.+..|..
T Consensus 76 ~~~~~~laLI~R------g~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~v-s~~~ge~l~~~~~ 148 (348)
T KOG4628|consen 76 TRSTSFLALIRR------GGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFV-SVFSGELLSSYAG 148 (348)
T ss_pred CCCcceEEEEEc------cCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEE-eeehHHHHHHhhc
Confidence 344567889988 67999999999999999999999987622 111222444556676666 4455666666543
|
|
| >cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2 | Back alignment and domain information |
|---|
Probab=81.92 E-value=3.4 Score=39.73 Aligned_cols=49 Identities=14% Similarity=0.178 Sum_probs=35.1
Q ss_pred CcCcccccceEEEEeeccC-CCC-------Cc-----hhHHHHHHHHHhcCceEEEEEeCCC
Q 044171 415 LFIPALVRGKLIICTYSFD-FEN-------DD-----ATIATVADNIKKIEAAGFILRMDPD 463 (813)
Q Consensus 415 ~~~~~~~~Gkivl~~~~~~-~~~-------g~-----~~~~~~~~~~~~~Ga~g~i~~n~~~ 463 (813)
++...+++||||++..+.- +.. +. .....|.+.+...||.|+|++.+..
T Consensus 42 Dy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~~ 103 (157)
T cd04821 42 DYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHETE 103 (157)
T ss_pred cccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCCC
Confidence 5667889999999886421 110 10 1334689999999999999998765
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini | Back alignment and domain information |
|---|
Probab=80.43 E-value=5.6 Score=29.43 Aligned_cols=43 Identities=14% Similarity=0.036 Sum_probs=27.3
Q ss_pred EEEEecCCCCeeEEEEEeCCCC-cEEEEecCeEEEecCcEEEEEEEE
Q 044171 732 RRVRNVSSANETYTVTVKEPSG-VKVSVSPQVFKIRGLASRELKIVL 777 (813)
Q Consensus 732 ~tv~N~~~~~~ty~~~~~~~~g-~~v~~~~~~~~v~~g~~~~~~vt~ 777 (813)
++++|.|+.+...+-.. ..=| ..++ .+.=.++||++..+.|++
T Consensus 2 F~~~N~g~~~L~I~~v~-tsCgCt~~~--~~~~~i~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVITDVQ-TSCGCTTAE--YSKKPIAPGESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEEEEee-EccCCEEee--CCcceECCCCEEEEEEEC
Confidence 47899998776544221 1122 2333 344569999999999874
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 813 | ||||
| 3vta_A | 621 | Crystal Structure Of Cucumisin, A Subtilisin-Like E | 2e-73 | ||
| 3i6s_A | 649 | Crystal Structure Of The Plant Subtilisin-Like Prot | 1e-63 | ||
| 3afg_A | 539 | Crystal Structure Of Pron-Tk-Sp From Thermococcus K | 5e-12 | ||
| 1gns_A | 263 | Subtilisin Bpn' Length = 263 | 2e-08 | ||
| 2b6n_A | 278 | The 1.8 A Crystal Structure Of A Proteinase K Like | 7e-08 | ||
| 3f49_S | 266 | Anion-Triggered Engineered Subtilisin Subt_bacam Le | 2e-07 | ||
| 1yjb_A | 275 | Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant Wit | 2e-07 | ||
| 1sbi_A | 275 | Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, | 2e-07 | ||
| 1sue_A | 266 | Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mu | 2e-07 | ||
| 1aqn_A | 275 | Subtilisin Mutant 8324 Length = 275 | 2e-07 | ||
| 1dui_A | 266 | Subtilisin Bpn' From Bacillus Amyloliquefaciens, Cr | 2e-07 | ||
| 1s01_A | 275 | Large Increases In General Stability For Subtilisin | 2e-07 | ||
| 1ak9_A | 275 | Subtilisin Mutant 8321 Length = 275 | 2e-07 | ||
| 4dzt_A | 276 | Aqualysin I: The Crystal Structure Of A Serine Prot | 3e-07 | ||
| 1wsd_A | 269 | Alkaline M-Protease Form I Crystal Strcuture Length | 3e-07 | ||
| 2sbt_A | 275 | A Comparison Of The Three-Dimensional Structures Of | 4e-07 | ||
| 2sni_E | 275 | Structural Comparison Of Two Serine Proteinase-Prot | 4e-07 | ||
| 3cnq_S | 266 | Prosubtilisin Substrate Complex Of Subtilisin Subt_ | 4e-07 | ||
| 1s02_A | 275 | Effects Of Engineered Salt Bridges On The Stability | 4e-07 | ||
| 2sic_E | 275 | Refined Crystal Structure Of The Complex Of Subtili | 5e-07 | ||
| 1lw6_E | 281 | Crystal Structure Of The Complex Of Subtilisin Bpn' | 5e-07 | ||
| 1sub_A | 275 | Calcium-Independent Subtilisin By Design Length = 2 | 6e-07 | ||
| 1a2q_A | 275 | Subtilisin Bpn' Mutant 7186 Length = 275 | 6e-07 | ||
| 1gnv_A | 266 | Calcium Independent Subtilisin Bpn' Mutant Length = | 7e-07 | ||
| 1suc_A | 275 | Calcium-Independent Subtilisin By Design Length = 2 | 7e-07 | ||
| 1sua_A | 266 | Subtilisin Bpn' Length = 266 | 8e-07 | ||
| 1spb_S | 266 | Subtilisin Bpn' Prosegment (77 Residues) Complexed | 8e-07 | ||
| 1ah2_A | 269 | Serine Protease Pb92 From Bacillus Alcalophilus, Nm | 9e-07 | ||
| 1ndu_A | 269 | Bacillus Lentus Subtilisin Variant S101gV104N Lengt | 9e-07 | ||
| 1ndq_A | 269 | Bacillus Lentus Subtilisin Length = 269 | 9e-07 | ||
| 1st3_A | 269 | The Crystal Structure Of The Bacillus Lentus Alkali | 9e-07 | ||
| 1c9j_A | 269 | Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A | 9e-07 | ||
| 1mee_A | 275 | The Complex Between The Subtilisin From A Mesophili | 1e-06 | ||
| 1ubn_A | 275 | Selenosubtilisin Bpn Length = 275 | 1e-06 | ||
| 1v5i_A | 275 | Crystal Structure Of Serine Protease Inhibitor Poia | 1e-06 | ||
| 2ixt_A | 310 | Sphericase Length = 310 | 1e-06 | ||
| 1q5p_A | 269 | S156e/s166d Variant Of Bacillus Lentus Subtilisin L | 3e-06 | ||
| 1iav_A | 269 | Structure On Native (Asn 87) Subtilisin From Bacill | 3e-06 | ||
| 1c9n_A | 269 | Bacillus Lentus Substilisin Variant (Ser 87) K27rV1 | 3e-06 | ||
| 1c9m_A | 269 | Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I L | 3e-06 | ||
| 1st2_A | 275 | The Three-Dimensional Structure Of Bacillus Amyloli | 3e-06 | ||
| 4dww_A | 275 | Crystal Structure Of Nattokinase From Bacillus Subt | 4e-06 | ||
| 1ea7_A | 310 | Sphericase Length = 310 | 4e-06 | ||
| 1scj_A | 275 | Crystal Structure Of Subtilisin-Propeptide Complex | 4e-06 | ||
| 2gko_A | 309 | S41 Psychrophilic Protease Length = 309 | 6e-06 | ||
| 3qtl_A | 274 | Structural Basis For Dual-Inhibition Mechanism Of A | 9e-06 | ||
| 1cse_E | 274 | The High-Resolution X-Ray Crystal Structure Of The | 9e-06 | ||
| 1yu6_A | 275 | Crystal Structure Of The Subtilisin Carlsberg:omtky | 1e-05 | ||
| 4gi3_A | 275 | Crystal Structure Of Greglin In Complex With Subtil | 1e-05 | ||
| 1c3l_A | 274 | Subtilisin-Carlsberg Complexed With Xenon (8 Bar) L | 1e-05 | ||
| 1scn_E | 276 | Inactivation Of Subtilisin Carlsberg By N-(Tert-But | 1e-05 | ||
| 1sel_A | 274 | Crystal Structure Of Selenosubtilisin At 2.0-Angstr | 3e-05 | ||
| 1s2n_A | 284 | Crystal Strucure Of A Cold Adapted Subtilisin-Like | 5e-05 | ||
| 1bh6_A | 274 | Subtilisin Dy In Complex With The Synthetic Inhibit | 1e-04 | ||
| 1v6c_A | 441 | Crystal Structure Of Psychrophilic Subtilisin-like | 6e-04 | ||
| 1wmd_A | 434 | Crystal Structure Of Alkaline Serine Protease Kp-43 | 8e-04 |
| >pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like Endoprotease From Cucumis Melo L Length = 621 | Back alignment and structure |
|
| >pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease Sbt3 Length = 649 | Back alignment and structure |
|
| >pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus Kodakaraensis Length = 539 | Back alignment and structure |
|
| >pdb|1GNS|A Chain A, Subtilisin Bpn' Length = 263 | Back alignment and structure |
|
| >pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme From A Psychrotroph Serratia Species Length = 278 | Back alignment and structure |
|
| >pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam Length = 266 | Back alignment and structure |
|
| >pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met 50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169 Replaced By Ala, Gln 206 Replaced By Cys, Asn 218 Replaced By Ser And Lys 256 Replaced By Tyr) (M50f, N76d, G169a, Q206c, N218s, And K256y) In 35% Dimethylformamide Length = 275 | Back alignment and structure |
|
| >pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d, G169a, Q206c, N218s) Length = 275 | Back alignment and structure |
|
| >pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1AQN|A Chain A, Subtilisin Mutant 8324 Length = 275 | Back alignment and structure |
|
| >pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal Growth Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin Bpn(Prime) Through Incremental Changes In The Free Energy Of Unfolding Length = 275 | Back alignment and structure |
|
| >pdb|1AK9|A Chain A, Subtilisin Mutant 8321 Length = 275 | Back alignment and structure |
|
| >pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease From An Extreme Thermophile, Thermus Aquaticus Yt-1 Length = 276 | Back alignment and structure |
|
| >pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture Length = 269 | Back alignment and structure |
|
| >pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of Subtilisin Bpn And Subtilisin Novo Length = 275 | Back alignment and structure |
|
| >pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And Ci-2- Subtilisin Novo Length = 275 | Back alignment and structure |
|
| >pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam Length = 266 | Back alignment and structure |
|
| >pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of Subtilisin Bpn' Length = 275 | Back alignment and structure |
|
| >pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin Bpn' And Streptomyces Subtilisin Inhibitor At 1.8 Angstroms Resolution Length = 275 | Back alignment and structure |
|
| >pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution Length = 281 | Back alignment and structure |
|
| >pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design Length = 275 | Back alignment and structure |
|
| >pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186 Length = 275 | Back alignment and structure |
|
| >pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design Length = 275 | Back alignment and structure |
|
| >pdb|1SUA|A Chain A, Subtilisin Bpn' Length = 266 | Back alignment and structure |
|
| >pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6. Crystallization Temperature 20 C Diffraction Temperature- 160 C Length = 266 | Back alignment and structure |
|
| >pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18 Structures Length = 269 | Back alignment and structure |
|
| >pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N Length = 269 | Back alignment and structure |
|
| >pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin Length = 269 | Back alignment and structure |
|
| >pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline Protease, Subtilisin Bl, At 1.4 Angstroms Resolution Length = 269 | Back alignment and structure |
|
| >pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant Length = 269 | Back alignment and structure |
|
| >pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic Bacterium And The Leech Inhibitor Eglin-C Length = 275 | Back alignment and structure |
|
| >pdb|1UBN|A Chain A, Selenosubtilisin Bpn Length = 275 | Back alignment and structure |
|
| >pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In Complex With Subtilisin Bpn' Length = 275 | Back alignment and structure |
|
| >pdb|2IXT|A Chain A, Sphericase Length = 310 | Back alignment and structure |
|
| >pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin Length = 269 | Back alignment and structure |
|
| >pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus Lentus Length = 269 | Back alignment and structure |
|
| >pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87) K27rV104YN123ST274A Length = 269 | Back alignment and structure |
|
| >pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I Length = 269 | Back alignment and structure |
|
| >pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus Amyloliquefaciens Subtilisin At 1.8 Angstroms And An Analysis Of The Structural Consequences Of Peroxide Inactivation Length = 275 | Back alignment and structure |
|
| >pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis Natto Length = 275 | Back alignment and structure |
|
| >pdb|1EA7|A Chain A, Sphericase Length = 310 | Back alignment and structure |
|
| >pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex Length = 275 | Back alignment and structure |
|
| >pdb|2GKO|A Chain A, S41 Psychrophilic Protease Length = 309 | Back alignment and structure |
|
| >pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A Non-Classical Kazal-Type Serine Protease Inhibitor From Horseshoe Crab In Complex With Subtilisin Length = 274 | Back alignment and structure |
|
| >pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex Formed Between Subtilisin Carlsberg And Eglin C, An Elastase Inhibitor From The Leech Hirudo Medicinalis. Structural Analysis, Subtilisin Structure And Interface Geometry Length = 274 | Back alignment and structure |
|
| >pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3 Complex Length = 275 | Back alignment and structure |
|
| >pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin Length = 275 | Back alignment and structure |
|
| >pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar) Length = 274 | Back alignment and structure |
|
| >pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By N-(Tert-Butoxycarbonyl-Alanyl- Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation Of Covalent Enzyme-Inhibitor Linkage In The Form Of A Carbamate Derivative Length = 276 | Back alignment and structure |
|
| >pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms Resolution Length = 274 | Back alignment and structure |
|
| >pdb|1S2N|A Chain A, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine Proteinase Length = 284 | Back alignment and structure |
|
| >pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N- Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone Length = 274 | Back alignment and structure |
|
| >pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Protease Apa1 From Antarctic Psychrotroph Pseudoalteromonas Sp. As-11 Length = 441 | Back alignment and structure |
|
| >pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K) Length = 434 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* Length = 649 | Back alignment and structure |
|---|
Score = 527 bits (1357), Expect = e-178
Identities = 220/705 (31%), Positives = 334/705 (47%), Gaps = 78/705 (11%)
Query: 120 TMHTPEFLGI--PVGVWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKF 177
T HT +FL + G+WP A G+ V++ +D+GI PE SF + ++
Sbjct: 1 TTHTSDFLKLNPSSGLWP----ASGLGQDVIVAVLDSGIWPESASFQDDGM--PEIPKRW 54
Query: 178 KGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAG 237
KG C G +F ++ CN K++GA YF + +A D S D DGHG+H AS AG
Sbjct: 55 KGICKPGTQFNASMCNRKLIGANYFNKGILAN-DPTVNITMNSARDTDGHGTHCASITAG 113
Query: 238 NHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFGGYMADVVAAVDQAVEDGVDIISLSV 297
N V G+ G A G+AP AR+AVYK + G + +D++AA+DQAV DGVD+IS+S
Sbjct: 114 NFAKGVSHFGYAPGTARGVAPRARLAVYKFSFNEGTFTSDLIAAMDQAVADGVDMISISY 173
Query: 298 GPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSSSILSFSPWITSIAASITD 357
G +P + +A+ + A GVLV +AGN GP S+ + SPWI +A+ TD
Sbjct: 174 GYRFIPL----YEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTD 229
Query: 358 RKYNNTIKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELF- 416
R + T+ L NG G L P P+ + C EL
Sbjct: 230 RTFAGTLTLGNGLKIRGWSLFPARAFVRDSPVIYNKTL------------SDCSSEELLS 277
Query: 417 IPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPDQDFSPNKFKDMAL 476
++IC + DF + I + I + P F+
Sbjct: 278 QVENPENTIVICDDNGDFSD-------QMRIITRARLKAAIFISE-----DPGVFRSATF 325
Query: 477 DVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPVVASYS 536
PG+++N + ++ Y + A I + APVVA+ S
Sbjct: 326 PNPGVVVNK-KEGKQVINYVKNSV-----------TPTATITFQETYLDTKPAPVVAASS 373
Query: 537 SRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSP----SSEGDPNLKGRNFALLSGTSMA 592
+RGP + + KP+I+APG I AA+ P +S G L ++ L SGTSMA
Sbjct: 374 ARGPSRS-----YLGISKPDILAPGVLILAAYPPNVFATSIGTNILLSTDYILESGTSMA 428
Query: 593 TPHIAGVAALIKQRHPKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHAT 652
PH AG+AA++K HP+WSP+AI SAMMT+A+ D++ PI D + + AT
Sbjct: 429 APHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKPIKDSDNNKA---------AT 479
Query: 653 PFDFGAGFINPARAIDPGLIFNAHFQEYVQFLCAVPGVDDDYVRRVTGYGCPTENQGWCS 712
P D GAG ++P RA+DPGL+++A Q+YV LC++ ++ + + +
Sbjct: 480 PLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSL-NFTEEQFKTIARSSASHNCSNPSA 538
Query: 713 DLNTPS-ITISNLVGS-----RKVIRRVRNVSSANETYTVTVKEPSGVKVSVSPQVFKIR 766
DLN PS I + ++ G+ +K R V NV TY +K P +SVSPQ+ +
Sbjct: 539 DLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKAPKNSTISVSPQILVFK 598
Query: 767 GL-ASRELKIVLKAT-NSTRAYSFGAMVLQGNN-NHIIRIPIAVY 808
+ + ++ + ++ + G++ N NH +R PI
Sbjct: 599 NKNEKQSYTLTIRYIGDEGQSRNVGSITWVEQNGNHSVRSPIVTS 643
|
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} Length = 621 | Back alignment and structure |
|---|
Score = 516 bits (1330), Expect = e-175
Identities = 223/695 (32%), Positives = 333/695 (47%), Gaps = 83/695 (11%)
Query: 120 TMHTPEFLGIPVGVWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKG 179
T + +FLG P+ V +V+G +DTGI PE PSF F K+KG
Sbjct: 1 TTRSWDFLGFPLTVPRRSQ----VESNIVVGVLDTGIWPESPSFDDEGFSPPPP--KWKG 54
Query: 180 KCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNH 239
C T N F CN KI+GA+ + G S D P D +GHG+HTASTAAG
Sbjct: 55 TCETSNNFR---CNRKIIGARSYHI-----GRPISPGDVNGPRDTNGHGTHTASTAAGGL 106
Query: 240 RVPVIVSGFNYGYASGMAPGARIAVYKALYTFGGYMADVVAAVDQAVEDGVDIISLSVGP 299
+ G G A G P ARIA YK + G D++AA D A+ DGVDIISLSVG
Sbjct: 107 VSQANLYGLGLGTARGGVPLARIAAYKVCWNDGCSDTDILAAYDDAIADGVDIISLSVGG 166
Query: 300 SAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSSSILSFSPWITSIAASITDRK 359
+ F++A+ + A + G+L +AGN GP+ + S SPW+ S+AAS DRK
Sbjct: 167 ---ANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRK 223
Query: 360 YNNTIKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPA 419
+ +++ NG SF G+ + T YYPL + D+ N + C + P
Sbjct: 224 FVTQVQIGNGQSFQGV--SINTFDNQYYPLVSGRDI--PNTGFDKSTSRFCTDKSV-NPN 278
Query: 420 LVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVP 479
L++GK+++C SF + K ++ A +L +D++ + +P
Sbjct: 279 LLKGKIVVCEASFGP----------HEFFKSLDGAAGVLMTSNTRDYAD------SYPLP 322
Query: 480 GIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPVVASYSSRG 539
+L+ + L Y S R+ A +F I + APVV S+SSRG
Sbjct: 323 SSVLDP-NDLLATLRYIYS----IRSPGATIF--------KSTTILNASAPVVVSFSSRG 369
Query: 540 PDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGV 599
P+ T DV+KP+I PG I AAW + + F ++SGTSM+ PHI G+
Sbjct: 370 PN-----RATKDVIKPDISGPGVEILAAWPSVAPVGGIRRNTLFNIISGTSMSCPHITGI 424
Query: 600 AALIKQRHPKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAG 659
A +K +P WSPAAI SA+MT+A + +P F +G+G
Sbjct: 425 ATYVKTYNPTWSPAAIKSALMTTASPMNARFNP------------------QAEFAYGSG 466
Query: 660 FINPARAIDPGLIFNAHFQEYVQFLCAVPGVDDDYVRRVTG--YGCPTENQGWCSDLNTP 717
+NP +A+ PGL+++A+ +YV+FLC G + VRR+TG C + N G DLN P
Sbjct: 467 HVNPLKAVRPGLVYDANESDYVKFLCGQ-GYNTQAVRRITGDYSACTSGNTGRVWDLNYP 525
Query: 718 SITIS---NLVGSRKVIRRVRNVSSANETYTVTVKEPSGVKVSVSPQVFKIRGL-ASREL 773
S +S + ++ R + +V+ TY + P G+ +SV+P V GL +
Sbjct: 526 SFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSF 585
Query: 774 KIVLKATNSTRAYSFGAMVLQGNNNHIIRIPIAVY 808
+ ++ + ++V + H +R PI +
Sbjct: 586 TLTVRGSIKG-FVVSASLVW-SDGVHYVRSPITIT 618
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Length = 926 | Back alignment and structure |
|---|
Score = 344 bits (883), Expect = e-105
Identities = 105/687 (15%), Positives = 208/687 (30%), Gaps = 98/687 (14%)
Query: 134 WPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTA-- 191
TL G G V+ ID G + H ++ + + K +
Sbjct: 6 VKTLQEKAGKGAGTVVAVIDAGFDKNHEAWRLTDKTK--ARYQSKEDLEKAKKEHGITYG 63
Query: 192 --CNSKIVGAQYFARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFN 249
N K+ ++ HG+H + +GN
Sbjct: 64 EWVNDKVAYYHDYS-------------KDGKTAVDQEHGTHVSGILSGN----APSETKE 106
Query: 250 YGYASGMAPGARIAVYKALYTFGG--YMADVVAAVDQAVEDGVDIISLSVGPSAVPSGPA 307
G P A++ + + G Y + A+ A+ G +I++S G +A+
Sbjct: 107 PYRLEGAMPEAQLLLMRVEIVNGLADYARNYAQAIRDAINLGAKVINMSFGNAALAYAN- 165
Query: 308 AFLNALEMELLFATKAGVLVVQAAGNSGPS---SSSILSFSPWITSIAASITDRKYNNTI 364
+ + +A GV +V +AGN + L+ P +
Sbjct: 166 -LPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVA 224
Query: 365 KLANGHSFS-GIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRG 423
+ + + + P+ + + + + + V+G
Sbjct: 225 SYSPDKQLTETVRVKTADQQDKEMPVLSTNRF---EPNKAYDYAYANRGTKEDDFKDVKG 281
Query: 424 KLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIIL 483
K+ + E D KK A G ++ + D+ F +P +
Sbjct: 282 KIALI------ERGDIDFKDKIAKAKKAGAVGVLIYDNQDKGFPIEL--PNVDQMPAAFI 333
Query: 484 NNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPVVASYSSRGPDVN 543
+ +K + + F+A ++L ++ +SS G +
Sbjct: 334 SRKDGL----------LLKDNPQKTITFNATPKVLPTA------SGTKLSRFSSWGLTAD 377
Query: 544 NALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALI 603
+KP+I APG I ++ + + +A LSGTSM+ P +AG+ L+
Sbjct: 378 G-------NIKPDIAAPGQDILSSVANNK----------YAKLSGTSMSAPLVAGIMGLL 420
Query: 604 KQRHPKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGFINP 663
++++ P S + A+ S + L + + +P GAG ++
Sbjct: 421 QKQYETQYPDMTPSERLDLAKKVLMSSATALYDEDEKAY--------FSPRQQGAGAVDA 472
Query: 664 ARAIDPGLIFNAHFQEYVQFLCAVPGVDDDYVRRVTGYGCPTENQGWCSDLNTPSITISN 723
+A + ++ + V D + V N+ T+
Sbjct: 473 KKASAATMYVTD--KDNTSSKVHLNNVSDKFEVTVN-----VHNKSDKPQELYYQATVQT 525
Query: 724 LVGSRKVIRRVRNVSSANETYTVTVKEPSGVKVSVSPQVFKIRGLASRELKIVLKATNST 783
K V +T+ S +V+V ASR K +L +
Sbjct: 526 DKVDGKHFALAPKVLYETSWQKITIPANSSKQVTVPID-------ASRFSKDLLAQMKNG 578
Query: 784 RAYS-FGAMVLQGNNNHIIRIPIAVYV 809
F ++ IP +
Sbjct: 579 YFLEGFVRFKQDPTKEELMSIPYIGFR 605
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 5e-26
Identities = 84/378 (22%), Positives = 137/378 (36%), Gaps = 86/378 (22%)
Query: 33 EPVTSLKLERSYDRNETDAIV-YKERISGGHDRFLESLLHGHSYTKLYSYTHLLSGFAIH 91
P K++R E I+ + + +L Y+Y H++ A+
Sbjct: 20 TPGLFKKVQRMSWDQEVSTIIMFDNQAD---KEKAVEILDFLGAKIKYNY-HIIPALAVK 75
Query: 92 IESEEA----------VSTLQNAKGVRIIHEDIKMEKLTMHTPEFLGIPVGVWPTLGGAE 141
I+ ++ GV+ I ED ++ + +
Sbjct: 76 IKVKDLLIIAGLMDTGYFGNAQLSGVQFIQEDYVVKVAVETEGLDESAAQVMATNMWNLG 135
Query: 142 FSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQY 201
+ G G+ IG IDTGI+ HP K++G
Sbjct: 136 YDGSGITIGIIDTGIDASHPDLQG-----------------------------KVIGW-- 164
Query: 202 FARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGAR 261
+ +P+D +GHG+H AS AAG + G GMAPGA+
Sbjct: 165 ----------VDFVNGKTTPYDDNGHGTHVASIAAGT-------GAASNGKYKGMAPGAK 207
Query: 262 IAVYKALYTFG-GYMADVVA----AVDQAVEDGVDIISLSVGPSAVPSGPAAFLNALEME 316
+ K L G G ++D++ AV + G+ +I+LS+G S G + A+
Sbjct: 208 LVGIKVLNGQGSGSISDIINGVDWAVQNKDKYGIKVINLSLGSSQSSDGTDSLSQAVN-- 265
Query: 317 LLFATKAGVLVVQAAGNSGPSSSSILS--FSPWITSIAASITDRKYNNTIKLANGHSFSG 374
A AG++VV AAGNSGP+ ++ S + + ++ A D+ + FS
Sbjct: 266 --NAWDAGLVVVVAAGNSGPNKYTVGSPAAASKVITVGA--VDKYDV----IT---DFSS 314
Query: 375 IGLAPPTLGRVYYPLAAA 392
G PT P A
Sbjct: 315 RG---PTADNRLKPEVVA 329
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 106 bits (265), Expect = 6e-24
Identities = 44/150 (29%), Positives = 68/150 (45%), Gaps = 28/150 (18%)
Query: 532 VASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSM 591
+ +SSRGP +N L KP ++APG+ I AA S + GT+M
Sbjct: 309 ITDFSSRGPTADNRL-------KPEVVAPGNWIIAAR-ASGTSMGQPINDYYTAAPGTAM 360
Query: 592 ATPHIAGVAALIKQRHPKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHA 651
ATPH+AG+AAL+ Q HP W+P + +A++ +A+ + + +D
Sbjct: 361 ATPHVAGIAALLLQAHPSWTPDKVKTALIETAD-------IVKPDEIAD----------- 402
Query: 652 TPFDFGAGFINPARAIDPGLIFNAHFQEYV 681
+GAG +N +A F YV
Sbjct: 403 --IAYGAGRVNAYKAAYYDNYAKLTFTGYV 430
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 5e-25
Identities = 49/326 (15%), Positives = 90/326 (27%), Gaps = 71/326 (21%)
Query: 66 LESLLHGHSYTKLYSYTHLLSGFAIHIESEEAVSTLQNAKGVRIIHEDIKMEKLTMHTPE 125
L+ S +Y+ L I + A + ++ I+ + T +
Sbjct: 57 FNKLVKKKSLNVVYNIPEL-HVAQIKMTKMHANALANYKNDIKYINATCSTCITSEKTID 115
Query: 126 FL---------------GIPVGVWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRG 170
+ L I IDTG+ H ++
Sbjct: 116 RTSNESLFSRQWDMNKITNNGASYDDLPK----HANTKIAIIDTGVMKNHDDLKNNFSTD 171
Query: 171 NQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYASPFDADGHGSH 230
++++ G T D D GHG+
Sbjct: 172 SKNLVPLNGFRGTEPEETG---------------------------DVHDVNDRKGHGTM 204
Query: 231 TASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFGGYMADVVAAVDQAVEDGV 290
+ + N ++ G+AP + +Y+ + + V A+ QA DG
Sbjct: 205 VSGQTSANGKL------------IGVAPNNKFTMYRVFGSKKTELLWVSKAIVQAANDGN 252
Query: 291 DIISLSVG---------PSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSSSI 341
+I++SVG +AL+ + +A K +VV AAGN G +
Sbjct: 253 QVINISVGSYIILDKNDHQTFRKDEKVEYDALQKAINYAKKKKSIVVAAAGNDGIDVNDK 312
Query: 342 LSFSPWITSIAASITDR---KYNNTI 364
+N +
Sbjct: 313 QKLKLQREYQGNGEVKDVPASMDNVV 338
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 78.8 bits (194), Expect = 2e-15
Identities = 22/150 (14%), Positives = 46/150 (30%), Gaps = 47/150 (31%)
Query: 532 VASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPN------------LK 579
++ +S+ G + +I APG S + N
Sbjct: 349 LSEFSNFGMNY------------TDIAAPGGSFAYLNQFGVDKWMNEGYMHKENILTTAN 396
Query: 580 GRNFALLSGTSMATPHIAGVAALIK-QRHPKWSPAAITSAMMTSAEVTDHSGSPILAQDY 638
+ +GT++ATP ++G ALI + H + P + ++
Sbjct: 397 NGRYIYQAGTALATPKVSGALALIIDKYHLEKHPDKAIELLYQHGTSKNNKPFS------ 450
Query: 639 SDSPILEHVLVHATPFDFGAGFINPARAID 668
+G G ++ +A++
Sbjct: 451 ----------------RYGHGELDVYKALN 464
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 3e-24
Identities = 48/252 (19%), Positives = 82/252 (32%), Gaps = 63/252 (25%)
Query: 133 VWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTAC 192
+ G G+G ++ DTG++ + H F+GK
Sbjct: 13 AQSSYG---LYGQGQIVAVADTGLDTGRNDSSMHE--------AFRGK------------ 49
Query: 193 NSKIVGAQYFARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGY 252
A + D +GHG+H A + GN G
Sbjct: 50 -------------ITALYALG---RTNNANDTNGHGTHVAGSVLGN------------GS 81
Query: 253 AS-GMAPGARIAVYKALY---TFGGYMADVVAAVDQAVEDGVDIISLSVGPSAVPSGPAA 308
+ GMAP A + + GG +++ QA G I + S G + +
Sbjct: 82 TNKGMAPQANLVFQSIMDSGGGLGGLPSNLQTLFSQAYSAGARIHTNSWGAAVNGAYTTD 141
Query: 309 FLNALEMELLFATKAGVLVVQAAGNSGPSSSSILSF--SPWITSIAASITDRKYNNTIKL 366
N + + K + ++ AAGN GP+ +I + + ++ A+ R +
Sbjct: 142 SRNVDD----YVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSFGSYAD 197
Query: 367 ANGH--SFSGIG 376
H FS G
Sbjct: 198 NINHVAQFSSRG 209
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 92.7 bits (230), Expect = 5e-20
Identities = 49/255 (19%), Positives = 90/255 (35%), Gaps = 47/255 (18%)
Query: 532 VASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRN--FALLSGT 589
VA +SSRGP + +KP++MAPG+ I +A S + + +A + GT
Sbjct: 202 VAQFSSRGPTKD-------GRIKPDVMAPGTFILSARSSLAPDSSFWANHDSKYAYMGGT 254
Query: 590 SMATPHIAGVAALIKQRHPKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLV 649
SMATP +AG A +++ K +++ +A + A D
Sbjct: 255 SMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAG-------AADIGLG-------- 299
Query: 650 HATPFDFGAGFINPARAIDPGLIFNAHFQEYVQFLCAVPGVDDDYVRRVTGY-----GCP 704
+ G G + ++++ + + Q +++
Sbjct: 300 -YPNGNQGWGRVTLDKSLNVAYVNESSSLSTSQKATYSFTATAGKPLKISLVWSDAPAST 358
Query: 705 TENQGWCSDL--------------NTPSITISNLVGSRKVIRRVRNVSSANETYTVTVKE 750
T + +DL N + ++ R + V + + TYT+ V
Sbjct: 359 TASVTLVNDLDLVITAPNGTQYVGNDFTSPYNDNWDGRNNVENVFINAPQSGTYTIEV-- 416
Query: 751 PSGVKVSVSPQVFKI 765
V V PQ F +
Sbjct: 417 -QAYNVPVGPQTFSL 430
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 1e-23
Identities = 46/257 (17%), Positives = 89/257 (34%), Gaps = 53/257 (20%)
Query: 519 DGRRAIYHGQAPV---VASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGD 575
A Y + + V +++SR P ++ + APG +I + +
Sbjct: 403 QMMEAEYAMREKLPGNVYTWTSRDPCIDGGQ-------GVTVCAPGGAIASVPQFTMSK- 454
Query: 576 PNLKGRNFALLSGTSMATPHIAGVAALI----KQRHPKWSPAAITSAMMTSAEVTDHSGS 631
L++GTSMA PH+AG AL+ KQ++ ++SP +I A+ +A T
Sbjct: 455 -------SQLMNGTSMAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTA--TKLGYV 505
Query: 632 PILAQDYSDSPILEHVLVHATPFDFGAGFINPARAIDPGLIFNAHFQEYVQFLCAVPGVD 691
PF G G +N +A + ++F V
Sbjct: 506 D--------------------PFAQGHGLLNVEKAFEHLTEHRQSKDNMLRFSVRVGNNA 545
Query: 692 DD--YVRRVTGYGCPTENQGWCSDLNTPSITISNLVGSRKVIRRVRNVSSANETYTVTVK 749
D ++R+ N + + ++ R+ ++S V+
Sbjct: 546 DKGIHLRQGVQRNSIDYNVYI--EPIFYNDKEADPKDKFNFNVRLNLIASQ-----PWVQ 598
Query: 750 EPSGVKVSVSPQVFKIR 766
+ + +S + +R
Sbjct: 599 CGAFLDLSYGTRSIAVR 615
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 98.4 bits (244), Expect = 4e-21
Identities = 41/261 (15%), Positives = 82/261 (31%), Gaps = 52/261 (19%)
Query: 133 VWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTAC 192
+ + F + +DT G R +
Sbjct: 201 IKTSYDCILFPTADGWLTIVDTTEQ---------------------GDLDQALRIGEYSR 239
Query: 193 NSKIVGAQYFARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGY 252
+ F ++ D + + + HG+H +S A+GN +
Sbjct: 240 THETRNVDDFLSISVNVHDEGNVLE--VVGMSSPHGTHVSSIASGN--------HSSRDV 289
Query: 253 ASGMAPGARIAVYKALYTFGG---YMADVVAAVDQAVE-----DGVDIISLSVGPSAVPS 304
G+AP A+I G +V A+ + +E +D+I++S G A S
Sbjct: 290 D-GVAPNAKIVSMTIGDGRLGSMETGTALVRAMTKVMELCRDGRRIDVINMSYGEHANWS 348
Query: 305 GPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSSSILSF----SPWITSIAASITDRKY 360
+ K GV+ V +AGN GP+ ++ + P + + A ++ +
Sbjct: 349 NSGRIGELMNE---VVNKYGVVWVASAGNHGPALCTVGTPPDISQPSLIGVGAYVSPQMM 405
Query: 361 -----NNTIKLANGHSFSGIG 376
N ++++
Sbjct: 406 EAEYAMREKLPGNVYTWTSRD 426
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 98.8 bits (247), Expect = 5e-23
Identities = 46/198 (23%), Positives = 70/198 (35%), Gaps = 57/198 (28%)
Query: 144 GEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFA 203
G G I +DTG+ HP A G
Sbjct: 29 GSGAKIAIVDTGVQSNHPDLAGKVVGG--------------------------------- 55
Query: 204 RAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIA 263
++ + ++P + +GHG+H A AA N +G AP A I
Sbjct: 56 --------WDFVDNDSTPQNGNGHGTHCAGIAAA--------VTNNSTGIAGTAPKASIL 99
Query: 264 VYKALYTFG-GYMADVVAAVDQAVEDGVDIISLSVGPSAVPSGPAAFLNALEMELLFATK 322
+ L G G V + A + G +ISLS+G G + A+ +A
Sbjct: 100 AVRVLDNSGSGTWTAVANGITYAADQGAKVISLSLG---GTVGNSGLQQAVN----YAWN 152
Query: 323 AGVLVVQAAGNSGPSSSS 340
G +VV AAGN+G ++ +
Sbjct: 153 KGSVVVAAAGNAGNTAPN 170
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 2e-17
Identities = 34/137 (24%), Positives = 55/137 (40%), Gaps = 48/137 (35%)
Query: 532 VASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSM 591
+S+S+ G V+ + APGSSI++ + +A LSGTSM
Sbjct: 190 KSSFSTYGSWVD-------------VAAPGSSIYSTY----------PTSTYASLSGTSM 226
Query: 592 ATPHIAGVAALIKQRHPKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHA 651
ATPH+AGVA L+ + S + I +A+ +A+
Sbjct: 227 ATPHVAGVAGLLASQGR--SASNIRAAIENTADKIS-----------------------G 261
Query: 652 TPFDFGAGFINPARAID 668
T + G +N +A+
Sbjct: 262 TGTYWAKGRVNAYKAVQ 278
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 98.4 bits (246), Expect = 7e-23
Identities = 53/206 (25%), Positives = 77/206 (37%), Gaps = 60/206 (29%)
Query: 142 FSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQY 201
F G V + +DTGI HP +VG
Sbjct: 21 FKGANVKVAVLDTGIQASHPDL-------------------------------NVVGG-- 47
Query: 202 FARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGAR 261
+ A D +GHG+H A T A G G+AP
Sbjct: 48 ----------ASFVAGEAYNTDGNGHGTHVAGTVAA--------LDNTTGVL-GVAPSVS 88
Query: 262 IAVYKALYTFG-GYMADVVAAVDQAVEDGVDIISLSVGPSAVPSGPAAFLNALEMELLFA 320
+ K L + G G + +V+ ++ A +G+D+I++S+G SG A A++ A
Sbjct: 89 LYAVKVLNSSGSGSYSGIVSGIEWATTNGMDVINMSLG---GASGSTAMKQAVD----NA 141
Query: 321 TKAGVLVVQAAGNSGPSSSSILSFSP 346
GV+VV AAGNSG S S+ P
Sbjct: 142 YARGVVVVAAAGNSGNSGSTNTIGYP 167
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 94.1 bits (235), Expect = 2e-21
Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 47/136 (34%)
Query: 532 VASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSM 591
AS+SS G ++ +MAPG+ +++ + +A L+GTSM
Sbjct: 185 RASFSSVGAELE-------------VMAPGAGVYSTY----------PTNTYATLNGTSM 221
Query: 592 ATPHIAGVAALIKQRHPKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHA 651
A+PH+AG AALI +HP S + + + + ++A +
Sbjct: 222 ASPHVAGAAALILSKHPNLSASQVRNRLSSTAT-------YL-----------------G 257
Query: 652 TPFDFGAGFINPARAI 667
+ F +G G IN A
Sbjct: 258 SSFYYGKGLINVEAAA 273
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 98.4 bits (246), Expect = 8e-23
Identities = 50/212 (23%), Positives = 79/212 (37%), Gaps = 57/212 (26%)
Query: 144 GEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFA 203
G I IDTG++ HP +G
Sbjct: 30 SSGQEIAVIDTGVDYTHPDLDGKVIKG--------------------------------- 56
Query: 204 RAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIA 263
++ + P D + HG+H A AA + G A GMAP RI
Sbjct: 57 --------YDFVDNDYDPMDLNNHGTHVAGIAAA-------ETNNATGIA-GMAPNTRIL 100
Query: 264 VYKALYTFG-GYMADVVAAVDQAVEDGVDIISLSVGPSAVPSGPAAFLNALEMELLFATK 322
+AL G G ++D+ A+ A + G ++I+LS+G NA+ +A
Sbjct: 101 AVRALDRNGSGTLSDIADAIIYAADSGAEVINLSLG---CDCHTTTLENAVN----YAWN 153
Query: 323 AGVLVVQAAGNSGPSSSSILSFSPWITSIAAS 354
G +VV AAGN+G S++ + + ++ A
Sbjct: 154 KGSVVVAAAGNNGSSTTFEPASYENVIAVGAV 185
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 82.6 bits (205), Expect = 2e-17
Identities = 33/137 (24%), Positives = 52/137 (37%), Gaps = 48/137 (35%)
Query: 532 VASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSM 591
+AS+S+ G V+ ++APG I + G +A +SGTSM
Sbjct: 191 LASFSNYGTWVD-------------VVAPGVDIVSTI----------TGNRYAYMSGTSM 227
Query: 592 ATPHIAGVAALIKQRHPKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHA 651
A+PH+AG+AAL+ + + I A+ +A+
Sbjct: 228 ASPHVAGLAALLASQGR--NNIEIRQAIEQTADKIS-----------------------G 262
Query: 652 TPFDFGAGFINPARAID 668
T F G IN A+
Sbjct: 263 TGTYFKYGRINSYNAVT 279
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 98.9 bits (247), Expect = 8e-23
Identities = 62/241 (25%), Positives = 94/241 (39%), Gaps = 63/241 (26%)
Query: 144 GEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFA 203
G G+ I +DTG+N HP + + + F
Sbjct: 25 GSGINIAVLDTGVNTSHPDLVN-----------------------------NVEQCKDFT 55
Query: 204 RAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIA 263
A + S D +GHG+H A TA + G G+AP A +
Sbjct: 56 GATTPINN--------SCTDRNGHGTHVAGTALAD------GGSDQAGIY-GVAPDADLW 100
Query: 264 VYKALYTFG-GYMADVVAAVDQAVEDGV-----DIISLSVGPSAVPSGPAAFLNALEMEL 317
YK L G GY D+ AA+ A + IIS+S+G + + +A+
Sbjct: 101 AYKVLLDSGSGYSDDIAAAIRHAADQATATGTKTIISMSLG---SSANNSLISSAVN--- 154
Query: 318 LFATKAGVLVVQAAGNSGPSSSSILS--FSPWITSIAASITDRKYNNTIKLANGHSFSGI 375
+A GVL+V AAGNSG S +I P ++AA + + + N T ++A +S
Sbjct: 155 -YAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAA-LENVQQNGTYRVA---DYSSR 209
Query: 376 G 376
G
Sbjct: 210 G 210
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 95.1 bits (237), Expect = 2e-21
Identities = 34/101 (33%), Positives = 48/101 (47%), Gaps = 11/101 (10%)
Query: 532 VASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSM 591
VA YSSRG ++ A I APGSS+++ W + +SGTSM
Sbjct: 203 VADYSSRGY-ISTAGDYVIQEGDIEISAPGSSVYSTW----------YNGGYNTISGTSM 251
Query: 592 ATPHIAGVAALIKQRHPKWSPAAITSAMMTSAEVTDHSGSP 632
ATPH++G+AA I +P S + S + A+ D G
Sbjct: 252 ATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGGY 292
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 99.9 bits (249), Expect = 1e-22
Identities = 36/222 (16%), Positives = 62/222 (27%), Gaps = 27/222 (12%)
Query: 141 EFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKI-VGA 199
+ I ID + F G + F + +
Sbjct: 45 TLGDPQITIVIIDGDPDYTLSCFE-----GAEVSKVFPYWHEPAEPITPEDYAAFQSIRD 99
Query: 200 QYFARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPG 259
Q D + H H ST G + G+AP
Sbjct: 100 QGLKGKEKEEALEAVIPDTKDRIVLNDHACHVTSTIVGQE---------HSPVF-GIAPN 149
Query: 260 ARIAVYKALYTFGG------YMADVVAAVDQAVEDGVDIISLSVG-PSAVPSGPAAFLNA 312
R+ G ++ A+D A+E G +II + P+ G + A
Sbjct: 150 CRVINMPQDAVIRGNYDDVMSPLNLARAIDLALELGANIIHCAFCRPTQTSEGEEILVQA 209
Query: 313 LEMELLFATKAGVLVVQAAGNSGPSSSSILSFSPWITSIAAS 354
++ VL+V GN+ S + + P ++ A+
Sbjct: 210 IK----KCQDNNVLIVSPTGNNSNESWCLPAVLPGTLAVGAA 247
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 81.0 bits (200), Expect = 1e-16
Identities = 30/141 (21%), Positives = 47/141 (33%), Gaps = 42/141 (29%)
Query: 532 VASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSM 591
+S+ G + K I+APG I A P L+GTSM
Sbjct: 253 PCHFSNWGGNNT----------KEGILAPGEEILGAQ-------PC--TEEPVRLTGTSM 293
Query: 592 ATPHIAGVAALIK----QRHPKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHV 647
A P + G++AL+ Q+ A+ +A++ +A D
Sbjct: 294 AAPVMTGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCDPEVV---------------- 337
Query: 648 LVHATPFDFGAGFINPARAID 668
P GF+N A+
Sbjct: 338 ---EEPERCLRGFVNIPGAMK 355
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 98.0 bits (245), Expect = 1e-22
Identities = 51/206 (24%), Positives = 80/206 (38%), Gaps = 59/206 (28%)
Query: 142 FSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQY 201
++G V + ID+GI+ HP K+ G
Sbjct: 21 YTGSNVKVAVIDSGIDSSHPDL-------------------------------KVAGGA- 48
Query: 202 FARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGAR 261
+ + D + HG+H A T A + G G+AP A
Sbjct: 49 ---------SMVPS-ETNPFQDNNSHGTHVAGTVAA--------LNNSIGVL-GVAPSAS 89
Query: 262 IAVYKALYTFG-GYMADVVAAVDQAVEDGVDIISLSVGPSAVPSGPAAFLNALEMELLFA 320
+ K L G G + ++ ++ A+ + +D+I++S+G PSG AA A++ A
Sbjct: 90 LYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLG---GPSGSAALKAAVD----KA 142
Query: 321 TKAGVLVVQAAGNSGPSSSSILSFSP 346
+GV+VV AAGN G S SS P
Sbjct: 143 VASGVVVVAAAGNEGTSGSSSTVGYP 168
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 93.8 bits (234), Expect = 3e-21
Identities = 36/137 (26%), Positives = 54/137 (39%), Gaps = 47/137 (34%)
Query: 532 VASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSM 591
AS+SS GP+++ +MAPG SI + G + +GTSM
Sbjct: 186 RASFSSVGPELD-------------VMAPGVSIQSTL----------PGNKYGAYNGTSM 222
Query: 592 ATPHIAGVAALIKQRHPKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHA 651
A+PH+AG AALI +HP W+ + S++ + +
Sbjct: 223 ASPHVAGAAALILSKHPNWTNTQVRSSLENTTT-------KL-----------------G 258
Query: 652 TPFDFGAGFINPARAID 668
F +G G IN A
Sbjct: 259 DSFYYGKGLINVQAAAQ 275
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 98.3 bits (245), Expect = 5e-22
Identities = 56/329 (17%), Positives = 101/329 (30%), Gaps = 93/329 (28%)
Query: 62 HDRFLESLLHGHSYTKLYSYTHLLSGFAIHIESEEAVSTLQNAKGVRIIHEDIKMEKLTM 121
+F + G +Y + + + + AV L+ GV + D + L
Sbjct: 11 KAKFNPHEVLGIGGHIVYQFKLI-PAVVVDV-PANAVGKLKKMPGVEKVEFDHQAVLLGK 68
Query: 122 HTPEFLGIPV---------------GVWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASH 166
+ G VW G S + + +DTG++ +HP
Sbjct: 69 PSWLGGGSTQPAQTIPWGIERVKAPSVWSITDG---SVSVIQVAVLDTGVDYDHPDL--- 122
Query: 167 SFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYASPFDADG 226
+ D +G
Sbjct: 123 -----------AANIAWCVSTL----------------------RGKVSTKLRDCADQNG 149
Query: 227 HGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-GYMADVVAAVDQA 285
HG+H T A + G G+APG +I + L G G +D+ ++QA
Sbjct: 150 HGTHVIGTIAA--------LNNDIGVV-GVAPGVQIYSVRVLDARGSGSYSDIAIGIEQA 200
Query: 286 VED--------------------GVDIISLSVGPSAVPSGPAAFLNALEMELLFATKAGV 325
+ ++IS+S+G P+ + + + A AG+
Sbjct: 201 ILGPDGVADKDGDGIIAGDPDDDAAEVISMSLG---GPADDSYLYDMII----QAYNAGI 253
Query: 326 LVVQAAGNSGPSSSSILSFSPWITSIAAS 354
++V A+GN G S S + P + ++ A
Sbjct: 254 VIVAASGNEGAPSPSYPAAYPEVIAVGAI 282
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 79.0 bits (195), Expect = 1e-15
Identities = 30/140 (21%), Positives = 52/140 (37%), Gaps = 39/140 (27%)
Query: 532 VASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSM 591
+AS+S+R P+ + APG I + + ++ L GT+M
Sbjct: 288 IASFSNRQPE---------------VSAPGVDILSTY----------PDDSYETLMGTAM 322
Query: 592 ATPHIAGVAALIKQRHPKWSPAAITSAM---MTSAEVTDHSGSPILAQDYSDSPILEHVL 648
ATPH++GV ALI+ + + + ++ V A D +
Sbjct: 323 ATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHI--TADDLGPT------- 373
Query: 649 VHATPFDFGAGFINPARAID 668
D+G G + A A+
Sbjct: 374 --GWDADYGYGVVRAALAVQ 391
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 95.8 bits (239), Expect = 1e-21
Identities = 50/209 (23%), Positives = 75/209 (35%), Gaps = 60/209 (28%)
Query: 144 GEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFA 203
G G +IG IDTG +HP + G +
Sbjct: 40 GAGQIIGVIDTGCQVDHPDL--------------AERIIGGVNLTT-------------- 71
Query: 204 RAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIA 263
+ D + D +GHG+H A T A + G G+AP A +
Sbjct: 72 ---------DYGGDETNFSDNNGHGTHVAGTVAA--------AETGSGVV-GVAPKADLF 113
Query: 264 VYKALYTFG-GYMADVVAAVDQAVED------GVDIISLSVGPSAVPSGPAAFLNALEME 316
+ KAL G G M + A+ AV+ + II++S+G P+ +A++
Sbjct: 114 IIKALSGDGSGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLG---GPTDSEELHDAVK-- 168
Query: 317 LLFATKAGVLVVQAAGNSGPSSSSILSFS 345
+A V VV AAGN G F+
Sbjct: 169 --YAVSNNVSVVCAAGNEGDGREDTNEFA 195
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 81.2 bits (201), Expect = 9e-17
Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 28/98 (28%)
Query: 532 VASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSM 591
++ +++ +++ I+APG I + + +A LSGT+M
Sbjct: 215 LSDFTNTNEEID-------------IVAPGVGIKSTY----------LDSGYAELSGTAM 251
Query: 592 ATPHIAGVAALIKQRHPK-----WSPAAITSAMMTSAE 624
A PH+AG ALI S I + ++ A
Sbjct: 252 AAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRRAT 289
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 93.8 bits (234), Expect = 2e-21
Identities = 52/200 (26%), Positives = 74/200 (37%), Gaps = 61/200 (30%)
Query: 142 FSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQY 201
+G GV + +DTGI+ HP I G
Sbjct: 21 LTGSGVKVAVLDTGIST-HPDL-------------------------------NIRGG-- 46
Query: 202 FARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGAR 261
+ S D +GHG+H A T A + G G+AP A
Sbjct: 47 ----------ASFVPGEPSTQDGNGHGTHVAGTIAA--------LNNSIGVL-GVAPSAE 87
Query: 262 IAVYKALYTFG-GYMADVVAAVDQAVEDGVDIISLSVGPSAVPSGPAAFLNALEMELLFA 320
+ K L G G ++ + ++ A +G+ + +LS+G PS A A+ A
Sbjct: 88 LYAVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLSLG---SPSPSATLEQAVN----SA 140
Query: 321 TKAGVLVVQAAGNSGPSSSS 340
T GVLVV A+GNSG S S
Sbjct: 141 TSRGVLVVAASGNSGAGSIS 160
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 91.8 bits (229), Expect = 1e-20
Identities = 35/136 (25%), Positives = 56/136 (41%), Gaps = 47/136 (34%)
Query: 532 VASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSM 591
AS+S G ++ I+APG ++ + + G +A L+GTSM
Sbjct: 180 RASFSQYGAGLD-------------IVAPGVNVQSTY----------PGSTYASLNGTSM 216
Query: 592 ATPHIAGVAALIKQRHPKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHA 651
ATPH+AG AAL+KQ++P WS I + + +A +
Sbjct: 217 ATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGSTNL-------------------- 256
Query: 652 TPFDFGAGFINPARAI 667
+G+G +N A
Sbjct: 257 ----YGSGLVNAEAAT 268
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 94.8 bits (235), Expect = 3e-20
Identities = 47/242 (19%), Positives = 72/242 (29%), Gaps = 58/242 (23%)
Query: 527 GQAPVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAW--------SPSSEGDPNL 578
G VA +SSR V+ + APG +I + +E P
Sbjct: 323 GGTFRVAGFSSRSDGVS-------------VGAPGVTILSTVPGEDSIGYEGHNENVPAT 369
Query: 579 KGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAITSAMMTSAEVTDHSGSPILAQDY 638
G + GTSMA PH+ GV A++ Q+ P P I + +A + +G
Sbjct: 370 NGGTYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNG-------- 421
Query: 639 SDSPILEHVLVHATPFDFGAGFINPARAIDPGLIFNAHFQEYVQFLCAVPGVDDDYVRRV 698
D G G + A+ L V
Sbjct: 422 -------------WDHDTGYGLVKLDAALQGPLPTQG----------GVEEFQVVVTDAK 458
Query: 699 TGYGCPTENQGWCSDLNTPSITISNLVGSRKVIRRVRNVSSANETYTVTVKEPSGVKVSV 758
+G PT D + + G R + TY + V P ++
Sbjct: 459 GNFGVPTVFVSMMRDNGSCYYAKTGPDGI------ARFPHIDSGTYDIFVGGPDHWDRAL 512
Query: 759 SP 760
+P
Sbjct: 513 AP 514
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 90.5 bits (224), Expect = 7e-19
Identities = 40/221 (18%), Positives = 68/221 (30%), Gaps = 66/221 (29%)
Query: 127 LGIPVGVWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNR 186
+G+ +W G +++ +DTG++ HP G+ G R
Sbjct: 141 IGVTQQLWEEASGT-----NIIVAVVDTGVDGTHPDLE--------------GQVIAGYR 181
Query: 187 FPSTACNSKIVGAQYFARAAIAYGDFNSTRDYASPFDADGHGSHTAST-AAGNHRVPVIV 245
+ + D + G+H A T AA
Sbjct: 182 P-------------------AFDEELPAGTDSS---YGGSAGTHVAGTIAAKKD------ 213
Query: 246 SGFNYGYASGMAPGARIAVYKALYTFG-------GYMADVVAAVDQAVEDGVDIISLSVG 298
G G+APGA+I V A + A + G +++ S G
Sbjct: 214 ---GKGIV-GVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWG 269
Query: 299 PSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSS 339
A + +A + GV++V +AGN+ S
Sbjct: 270 ---GWGYSYTMKEAFD----YAMEHGVVMVVSAGNNTSDSH 303
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 91.3 bits (227), Expect = 4e-20
Identities = 53/271 (19%), Positives = 91/271 (33%), Gaps = 87/271 (32%)
Query: 133 VWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTAC 192
VW G S + + +DTG++ +HP
Sbjct: 20 VWSITDG---SVSVIQVAVLDTGVDYDHPDL--------------AANIAWCVSTL---- 58
Query: 193 NSKIVGAQYFARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGY 252
+ D +GHG+H T A + G
Sbjct: 59 ------------------RGKVSTKLRDCADQNGHGTHVIGTIAA--------LNNDIGV 92
Query: 253 ASGMAPGARIAVYKALYTFG-GYMADVVAAVDQAV--------------------EDGVD 291
G+APG +I + L G G +D+ ++QA+ +D +
Sbjct: 93 V-GVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAE 151
Query: 292 IISLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSSSILSFSPWITSI 351
+IS+S+G P+ + + + A AG+++V A+GN G S S + P + ++
Sbjct: 152 VISMSLG---GPADDSYLYDMII----QAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAV 204
Query: 352 AASITDRKYNNTIKLANGHSFS--GIGLAPP 380
A D N +A SFS ++ P
Sbjct: 205 GA--IDSNDN----IA---SFSNRQPEVSAP 226
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 79.0 bits (195), Expect = 5e-16
Identities = 32/140 (22%), Positives = 52/140 (37%), Gaps = 39/140 (27%)
Query: 532 VASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSM 591
+AS+S+R P+V APG I + + ++ L GT+M
Sbjct: 213 IASFSNRQPEV---------------SAPGVDILSTY----------PDDSYETLMGTAM 247
Query: 592 ATPHIAGVAALIKQRHPKWSPAAITSAM---MTSAEVTDHSGSPILAQDYSDSPILEHVL 648
ATPH++GV ALI+ + + + ++ V IL D
Sbjct: 248 ATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRG-----ILHITADDLGPTGW-- 300
Query: 649 VHATPFDFGAGFINPARAID 668
D+G G + A A+
Sbjct: 301 ----DADYGYGVVRAALAVQ 316
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 91.3 bits (227), Expect = 5e-20
Identities = 49/206 (23%), Positives = 76/206 (36%), Gaps = 34/206 (16%)
Query: 144 GEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFA 203
G+ VV+ +DTGI H ++ G IS N S + +
Sbjct: 31 GQNVVVAVVDTGILH-HRDLNANVLPGYDFIS---------NSQISLDGDGRDADPFDEG 80
Query: 204 RAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIA 263
+ D+ HGSH A T A V+ G A G+A GA++
Sbjct: 81 DWFDNWACGGRPDPRKERSDSSWHGSHVAGTIAA-------VTNNRIGVA-GVAYGAKVV 132
Query: 264 VYKALYTFGGYMADVVAAVDQAV----------EDGVDIISLSVGPSAVPSGPAAFLNAL 313
+AL GGY +D+ + A + +I++S+G
Sbjct: 133 PVRALGRCGGYDSDISDGLYWAAGGRIAGIPENRNPAKVINMSLG------SDGQCSYNA 186
Query: 314 EMELLFATKAGVLVVQAAGNSGPSSS 339
+ + AT+ G LVV AAGN ++S
Sbjct: 187 QTMIDRATRLGALVVVAAGNENQNAS 212
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 73.2 bits (180), Expect = 5e-14
Identities = 29/140 (20%), Positives = 57/140 (40%), Gaps = 42/140 (30%)
Query: 533 ASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMA 592
AS+S+ G DV+ + APG I + + + ++ ++GTSMA
Sbjct: 235 ASFSNYGVDVD-------------LAAPGQDILSTVDSGTRRPVS---DAYSFMAGTSMA 278
Query: 593 TPHIAGVAALIKQR----HPKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVL 648
TPH++GVAAL+ + +PA + ++++ + +G
Sbjct: 279 TPHVSGVAALVISAANSVNKNLTPAELKDVLVSTT--SPFNGRL---------------- 320
Query: 649 VHATPFDFGAGFINPARAID 668
G+G ++ A++
Sbjct: 321 ----DRALGSGIVDAEAAVN 336
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Length = 441 | Back alignment and structure |
|---|
Score = 91.4 bits (227), Expect = 1e-19
Identities = 51/223 (22%), Positives = 78/223 (34%), Gaps = 61/223 (27%)
Query: 143 SGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYF 202
I ID+G + H TG
Sbjct: 20 QAGNRTICIIDSGYDRSHNDL--------------NANNVTGT----------------- 48
Query: 203 ARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPG--A 260
+ + T ++ P + + HG+H A T A N G G+ P A
Sbjct: 49 --------NNSGTGNWYQPGNNNAHGTHVAGTIAA--------IANNEGVV-GVMPNQNA 91
Query: 261 RIAVYKALYTFG-GYMADVVAAVDQAVED-GVDIISLSVGPSAVPSGPAAFLNALEMELL 318
I + K G GY + +VAA+D V G +++++S+G NAL
Sbjct: 92 NIHIVKVFNEAGWGYSSSLVAAIDTCVNSGGANVVTMSLG---GSGSTTTERNALN---- 144
Query: 319 FATKAGVLVVQAAGNSGPSSSSILSFSPWITSIAASITDRKYN 361
GVL++ AAGN+G SS S + + S+AA D +
Sbjct: 145 THYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAA--VDSNLD 185
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Length = 441 | Back alignment and structure |
|---|
Score = 69.8 bits (171), Expect = 1e-12
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 21/89 (23%)
Query: 580 GRNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAITSAMMTSAEVTDHSGSPILAQDYS 639
+++ +GTSMATPH++GVA L+ HP+ S + + +A+ +A+ +G
Sbjct: 359 NQDYEYYNGTSMATPHVSGVATLVWSYHPECSASQVRAALNATADDLSVAGRDN------ 412
Query: 640 DSPILEHVLVHATPFDFGAGFINPARAID 668
G G IN A
Sbjct: 413 ---------------QTGYGMINAVAAKA 426
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Length = 441 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 7e-05
Identities = 12/91 (13%), Positives = 19/91 (20%), Gaps = 19/91 (20%)
Query: 532 VASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSM 591
A++S V I PG +I + + G S
Sbjct: 186 HAAFSQYTDQVE-------------ISGPGEAILSTV------TVGEGRLADITIGGQSY 226
Query: 592 ATPHIAGVAALIKQRHPKWSPAAITSAMMTS 622
+ + L SA
Sbjct: 227 FSNGVVPHNRLTPSGTSYAPAPINASATGAL 257
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 88.2 bits (219), Expect = 5e-19
Identities = 29/207 (14%), Positives = 47/207 (22%), Gaps = 57/207 (27%)
Query: 144 GEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFA 203
VV+ +D+G+ F
Sbjct: 43 NTPVVVSVVDSGVAFIGG---------------LSDSEFAKFSF---------------- 71
Query: 204 RAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIA 263
G + HG+ AS A YG G+ P A I+
Sbjct: 72 ---TQDGSPFPVKK---SEALYIHGTAMASLIASR-----------YGIY-GVYPHALIS 113
Query: 264 VYKALYTFGG----YMADVVAAVDQAVEDGVDIISLSVGPSAVPSGPAAFLNALEMELLF 319
+ + + + + II++S G V S
Sbjct: 114 SRRVIPDGVQDSWIRAIESIMSNVFLAPGEEKIINISGGQKGVASASVWTELLSR----M 169
Query: 320 ATKAGVLVVQAAGNSGPSSSSILSFSP 346
L+V A GN G + +
Sbjct: 170 GRNNDRLIVAAVGNDGADIRKLSAQQR 196
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 78.2 bits (193), Expect = 1e-15
Identities = 22/137 (16%), Positives = 38/137 (27%), Gaps = 44/137 (32%)
Query: 532 VASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSM 591
+ S G + +I APG +I SGTS
Sbjct: 236 GITGSRFGNN------------WVDIAAPGQNITFLR----------PDAKTGTGSGTSE 273
Query: 592 ATPHIAGVAALIKQRHPKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHA 651
AT ++GV A + +P+ + + ++ SA+
Sbjct: 274 ATAIVSGVLAAMTSCNPRATATELKRTLLESADKYPSLVDK------------------- 314
Query: 652 TPFDFGAGFINPARAID 668
+N +AI
Sbjct: 315 ---VTEGRVLNAEKAIS 328
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 89.7 bits (222), Expect = 1e-18
Identities = 53/310 (17%), Positives = 91/310 (29%), Gaps = 77/310 (24%)
Query: 52 IVYKERISG----GHDRFLESLLHGHSYTK--LYSYTHLLSGFAIHIESEEAVSTLQNAK 105
+V KE R L++ Y L+ + LL GF + + S + +
Sbjct: 80 VVLKEETHLSQSERTARRLQAQAARRGYLTKILHVFHGLLPGFLVKM-SGDLLELALKLP 138
Query: 106 GVRIIHEDIKMEKLTMHTPEFLGIPVGVWPTLGG--AEFSGEGVVIGFIDTGINPEHPSF 163
V I ED + P L G V + +DT I +H
Sbjct: 139 HVDYIEEDSSVF--AQSIPWNLERITPPRYRADEYQPPDGGSLVEVYLLDTSIQSDHREI 196
Query: 164 ASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYASPFD 223
G+ + + TR +
Sbjct: 197 E--------------GRVMVT--------------------DFENVPEEDGTRFHRQASK 222
Query: 224 ADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-GYMADVVAAV 282
D HG+H A +G + G+A GA + + L G G ++ + +
Sbjct: 223 CDSHGTHLAGVVSGR----------DA----GVAKGASMRSLRVLNCQGKGTVSGTLIGL 268
Query: 283 DQAVEDGVD------IISLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGP 336
+ + + ++ L + AA +AGV++V AAGN
Sbjct: 269 EFIRKSQLVQPVGPLVVLLPLAGGYSRVLNAACQR--------LARAGVVLVTAAGNFRD 320
Query: 337 SSSSILSFSP 346
+ +SP
Sbjct: 321 DAC---LYSP 327
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 76.2 bits (187), Expect = 2e-14
Identities = 27/114 (23%), Positives = 44/114 (38%), Gaps = 11/114 (9%)
Query: 557 IMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAIT 616
+ APG I A S S F SGTS A H+AG+AA++ P+ + A +
Sbjct: 361 LFAPGEDIIGASSDCSTC--------FVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELR 412
Query: 617 SAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGFINPARAIDPG 670
++ + + + +P L + P GAG+ R +
Sbjct: 413 QRLIHFSAKDVINEAWFPEDQRVLTPNL---VAALPPSTHGAGWQLFCRTVWSA 463
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 80.7 bits (200), Expect = 9e-17
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 26/103 (25%)
Query: 533 ASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMA 592
+S+S+ G V+ + APGS I +AW + +SGTSMA
Sbjct: 186 SSFSNWGSCVD-------------LFAPGSQIKSAWYDGG----------YKTISGTSMA 222
Query: 593 TPHIAGVAALIKQRHPKWSPAAITSAMMTSA---EVTDHSGSP 632
TPH+AGVAAL Q + +P +T + + A +V+D G+
Sbjct: 223 TPHVAGVAALYLQENNGLTPLQLTGLLNSRASENKVSDTRGTT 265
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 5e-15
Identities = 46/209 (22%), Positives = 73/209 (34%), Gaps = 69/209 (33%)
Query: 141 EFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQ 200
F G GV IDTG+N H F G R
Sbjct: 25 NFDGFGVTAYVIDTGVNNNHEEF--------------------GGR-------------- 50
Query: 201 YFARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGA 260
+ ++ + A D +GHG+H A T G+ G+A
Sbjct: 51 -------SVSGYDFVDNDADSSDCNGHGTHVAGTIGGSQ--------------YGVAKNV 89
Query: 261 RIAVYKALYTFG-GYMADVVAAVDQAVEDGV--DIISLSVGPSAVPSGPAAFLNALEMEL 317
I + L G G + V++ VD ++ + ++S+G G + AL+ +
Sbjct: 90 NIVGVRVLSCSGSGTTSGVISGVDWVAQNASGPSVANMSLG------GGQS--TALDSAV 141
Query: 318 LFATKAGVLVVQAAGNSGPSSSSILSFSP 346
A ++GV + AAGNS + + SP
Sbjct: 142 QGAIQSGVSFMLAAGNSNADAC---NTSP 167
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 7e-16
Identities = 39/104 (37%), Positives = 56/104 (53%), Gaps = 25/104 (24%)
Query: 533 ASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMA 592
+S+S+ G ++ I APGSSI ++W S+ +SGTSMA
Sbjct: 188 SSFSNYGTCLD-------------IYAPGSSITSSWYTSNSA--------TNTISGTSMA 226
Query: 593 TPHIAGVAALIKQRHPKWSPAAITSAMMTSA---EVTD-HSGSP 632
+PH+AGVAAL +P SPA +T+ + T A +VTD +GSP
Sbjct: 227 SPHVAGVAALYLDENPNLSPAQVTNLLKTRATADKVTDAKTGSP 270
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 73.4 bits (181), Expect = 2e-14
Identities = 42/209 (20%), Positives = 71/209 (33%), Gaps = 69/209 (33%)
Query: 141 EFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQ 200
++ G GV IDTG+ H F G R
Sbjct: 27 DYDGSGVTAFVIDTGVLNTHNEF--------------------GGR-------------- 52
Query: 201 YFARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGA 260
A ++ + D +GHG+H A T G+ G+A
Sbjct: 53 -------ASSGYDFIDNDYDATDCNGHGTHVAGTIGGST--------------YGVAKNV 91
Query: 261 RIAVYKALYTFG-GYMADVVAAVDQAVEDGV--DIISLSVGPSAVPSGPAAFLNALEMEL 317
+ + L G G + V+A ++ + + ++S+G G A+ A + +
Sbjct: 92 NVVGVRVLNCSGSGSNSGVIAGINWVKNNASGPAVANMSLG------GGAS--QATDDAV 143
Query: 318 LFATKAGVLVVQAAGNSGPSSSSILSFSP 346
A AG+ V AAGN ++ ++SP
Sbjct: 144 NAAVAAGITFVVAAGNDNSNAC---NYSP 169
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 76.5 bits (189), Expect = 2e-15
Identities = 38/104 (36%), Positives = 56/104 (53%), Gaps = 25/104 (24%)
Query: 533 ASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMA 592
AS+S+ G V+ + APG+SI +AW S L+GTSMA
Sbjct: 186 ASFSNYGSCVD-------------LFAPGASIPSAWYTSDTA--------TQTLNGTSMA 224
Query: 593 TPHIAGVAALIKQRHPKWSPAAITSAMMTSA---EVTD-HSGSP 632
TPH+AGVAAL +++P +PA++ SA++ A ++ SGSP
Sbjct: 225 TPHVAGVAALYLEQNPSATPASVASAILNGATTGRLSGIGSGSP 268
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 5e-13
Identities = 45/207 (21%), Positives = 68/207 (32%), Gaps = 71/207 (34%)
Query: 143 SGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYF 202
+G GV + IDTGI H F
Sbjct: 29 TGRGVNVYVIDTGIRTTHREFGG------------------------------------- 51
Query: 203 ARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARI 262
RA + Y D + D +GHG+H A T G Y G+A +
Sbjct: 52 -RARVGY-DALGG----NGQDCNGHGTHVAGTIGGV----------TY----GVAKAVNL 91
Query: 263 AVYKALYTFG-GYMADVVAAVDQAVEDGVD--IISLSVGPSAVPSGPAAFLNALEMELLF 319
+ L G G + V+A VD + + ++S+G + A N
Sbjct: 92 YAVRVLDCNGSGSTSGVIAGVDWVTRNHRRPAVANMSLGGGVSTALDNAVKN-------- 143
Query: 320 ATKAGVLVVQAAGNSGPSSSSILSFSP 346
+ AGV+ AAGN ++ ++SP
Sbjct: 144 SIAAGVVYAVAAGNDNANAC---NYSP 167
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 77.6 bits (191), Expect = 5e-15
Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 11/115 (9%)
Query: 556 NIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAI 615
++ APG I A S S F SGTS A H+AG+AA++ P+ + A +
Sbjct: 208 DLFAPGEDIIGASSDCSTC--------FVSQSGTSQAAAHVAGIAAMMLSAEPELTLAEL 259
Query: 616 TSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGFINPARAIDPG 670
++ + + + +P L + P GAG+ R +
Sbjct: 260 RQRLIHFSAKDVINEAWFPEDQRVLTPNL---VAALPPSTHGAGWQLFCRTVWSA 311
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 76.5 bits (188), Expect = 1e-14
Identities = 40/223 (17%), Positives = 65/223 (29%), Gaps = 68/223 (30%)
Query: 141 EFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQ 200
G V + +DT I +H R
Sbjct: 22 PDGGSLVEVYLLDTSIQSDHREI--------------------EGR------------VM 49
Query: 201 YFARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGA 260
+ D AS D HG+H A +G + G+A GA
Sbjct: 50 VTDFENVPEEDGTRFHRQAS--KCDSHGTHLAGVVSGR----------DA----GVAKGA 93
Query: 261 RIAVYKALYTFG-GYMADVVAAVDQAVED------GVDIISLSVGPSAVPSGPAAFLNAL 313
+ + L G G ++ + ++ + G ++ L + G + L
Sbjct: 94 SMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLA------GGYS--RVL 145
Query: 314 EMELLFATKAGVLVVQAAGNSGPSSSSILSFSPWITSIAASIT 356
+AGV++V AAGN + +SP S IT
Sbjct: 146 NAACQRLARAGVVLVTAAGNFRDDAC---LYSP--ASAPEVIT 183
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 7e-13
Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 28/104 (26%)
Query: 533 ASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMA 592
+++S+ G V+ I APG+SI + W +SGTSMA
Sbjct: 191 STFSNYGRVVD-------------IFAPGTSITSTWIGG----------RTNTISGTSMA 227
Query: 593 TPHIAGVAALIKQRHPKWSPAAITSAMMTSA---EVTD-HSGSP 632
TPHIAG+AA + S A+ + T + +T SG+
Sbjct: 228 TPHIAGLAAYLFGLEGG-SAGAMCGRIQTLSTKNVLTSIPSGTV 270
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 2e-12
Identities = 43/211 (20%), Positives = 62/211 (29%), Gaps = 77/211 (36%)
Query: 144 GEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFA 203
G G + IDTG+ HP F
Sbjct: 31 GAGACVYVIDTGVEDTHPDFEG-------------------------------------- 52
Query: 204 RAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIA 263
RA + ST D GHG+H A T G+A I
Sbjct: 53 RAKQIK-SYASTAR-----DGHGHGTHCAGTIGSKT--------------WGVAKKVSIF 92
Query: 264 VYKALYTFG-GYMADVVAAVDQAVEDGVD-------IISLSVGPSAVPSGPAAFLNALEM 315
K L G G +++++A +D D + S+S+G + A
Sbjct: 93 GVKVLDDSGSGSLSNIIAGMDFVASDRQSRNCPRRTVASMSLGGGYSAALNQAAAR---- 148
Query: 316 ELLFATKAGVLVVQAAGNSGPSSSSILSFSP 346
+GV V AAGN ++ + SP
Sbjct: 149 ----LQSSGVFVAVAAGNDNRDAA---NTSP 172
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 66.8 bits (164), Expect = 3e-12
Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 28/104 (26%)
Query: 533 ASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMA 592
+S+S+ G ++ I PG+ I + W S +SGTSMA
Sbjct: 190 SSFSNYGSVLD-------------IFGPGTDILSTWIGGST----------RSISGTSMA 226
Query: 593 TPHIAGVAALIKQRHPKWSPAAITSAMMTSA---EVTD-HSGSP 632
TPH+AG+AA + + A+ + +A ++++ G+
Sbjct: 227 TPHVAGLAAYLMTLGKT-TAASACRYIADTANKGDLSNIPFGTV 269
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 5e-12
Identities = 45/212 (21%), Positives = 70/212 (33%), Gaps = 77/212 (36%)
Query: 143 SGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYF 202
+G+G + IDTGI HP F
Sbjct: 29 AGQGSCVYVIDTGIEASHPEFEG------------------------------------- 51
Query: 203 ARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARI 262
RA + + S+RD +GHG+H A T G+A ++
Sbjct: 52 -RAQMVKTYYYSSRD------GNGHGTHCAGTVGSRT--------------YGVAKKTQL 90
Query: 263 AVYKALYTFG-GYMADVVAAVDQAVEDGVD-------IISLSVGPSAVPSGPAAFLNALE 314
K L G G + ++A +D D + + SLS+G S +A
Sbjct: 91 FGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLGGGYSSSVNSAAAR--- 147
Query: 315 MELLFATKAGVLVVQAAGNSGPSSSSILSFSP 346
+GV+V AAGN+ + ++SP
Sbjct: 148 -----LQSSGVMVAVAAGNNNADAR---NYSP 171
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503 | Back alignment and structure |
|---|
Score = 65.9 bits (160), Expect = 2e-11
Identities = 52/295 (17%), Positives = 85/295 (28%), Gaps = 74/295 (25%)
Query: 143 SGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYF 202
+G GVV +D G++ E+ +
Sbjct: 52 TGAGVVAAIVDDGLDYENEDLK----------------------------------DNFC 77
Query: 203 ARAAIAYGDFNSTRDYASP-FDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGAR 261
A + DFN + P D HG+ A A N G+ A+
Sbjct: 78 AEGSW---DFNDNTNLPKPRLSDDYHGTRCAGEIAA--------KKGNNFCGVGVGYNAK 126
Query: 262 IAVYKALYTFGGYMADVVAAVDQAVEDGVDIISLSVGPS----AVPSGPAAFLNALEMEL 317
I+ + L D A++ + D DI S S GP+ + AL +
Sbjct: 127 ISGIRILSG-DITTEDEAASLIYGL-DVNDIYSCSWGPADDGRHLQGPSDLVKKALVKGV 184
Query: 318 LFATKA-GVLVVQAAGNSGPSSSSI----LSFSPWITSIAASITDRK------YNNTIKL 366
+ G + V A+GN G + + S + +I A + +
Sbjct: 185 TEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDHKDLHPPYSEGCSAVMA 244
Query: 367 ANGHSFSGIGLAPPTLGRVYYPL-----AAAADVCHRNVSTGIFSLESCQYPELF 416
S SG + + AAA G+++L P L
Sbjct: 245 VTYSSGSGEYIHSSDINGRCSNSHGGTSAAAPLA------AGVYTLLLEANPNLT 293
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503 | Back alignment and structure |
|---|
Score = 49.7 bits (118), Expect = 3e-06
Identities = 26/165 (15%), Positives = 48/165 (29%), Gaps = 16/165 (9%)
Query: 560 PGSSIWAAWSPSSEGDP----NLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAI 615
S++ A S G+ ++ GR GTS A P AGV L+ + +P + +
Sbjct: 238 GCSAVMAVTYSSGSGEYIHSSDINGRCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDV 297
Query: 616 TSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGFINPARAIDPGLIFNA 675
+ SA + + +G G I+ + I+ +
Sbjct: 298 QYLSILSAVGLEKNADGDWRDSAMGKKYS---------HRYGFGKIDAHKLIEMSKTWEN 348
Query: 676 HFQEYVQFLCAVPGVDDDYVRRVTGYGCPTENQGWCSDLNTPSIT 720
Q +P + T + L +
Sbjct: 349 VNA---QTWFYLPTLYVSQSTNSTEETLESVITISEKSLQDANFK 390
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471 | Back alignment and structure |
|---|
Score = 60.5 bits (146), Expect = 1e-09
Identities = 48/226 (21%), Positives = 70/226 (30%), Gaps = 62/226 (27%)
Query: 142 FSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQY 201
F+G G+V+ +D GI HP A GN P GA +
Sbjct: 35 FTGHGIVVSILDDGIEKNHPDLA-------------------GNYDP---------GASF 66
Query: 202 FARAAIAYGDFNST----RDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMA 257
D N + + + + HG+ A A N G+A
Sbjct: 67 ---------DVNDQDPDPQPRYTQMNDNRHGTRCAGEVAA--------VANNGVCGVGVA 109
Query: 258 PGARIAVYKALYTFGGYMADVVAAVDQAVE-DGVDIISLSVGPSAV-----PSGPAAFLN 311
ARI + L G + D V A + + + I S S GP A
Sbjct: 110 YNARIGGVRML---DGEVTDAVEARSLGLNPNHIHIYSASWGPEDDGKTVDGPARLAEEA 166
Query: 312 ALEMELLFATKAGVLVVQAAGNSGPSSSSI----LSFSPWITSIAA 353
G + V A+GN G S + S + SI++
Sbjct: 167 FFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISS 212
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 2e-05
Identities = 12/79 (15%), Positives = 33/79 (41%), Gaps = 5/79 (6%)
Query: 559 APGSSIWAAWSPSSEGDPN-----LKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPA 613
A S++ +S ++ + L+ + +GTS + P AG+ AL + + +
Sbjct: 225 ACSSTLATTYSSGNQNEKQIVTTDLRQKCTESHTGTSASAPLAAGIIALTLEANKNLTWR 284
Query: 614 AITSAMMTSAEVTDHSGSP 632
+ ++ +++ +
Sbjct: 285 DMQHLVVQTSKPAHLNADD 303
|
| >1ga6_A Serine-carboxyl proteinase; serine-carboxyl proteinase, hydrolase-hydrolase inhibitor CO; 1.00A {Pseudomonas SP} SCOP: c.41.1.2 PDB: 1ga4_A* 1ga1_A 1kdv_A* 1kdy_A* 1kdz_A* 1ke1_A* 1ke2_A* 1nlu_A* Length = 372 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 4e-04
Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 2/91 (2%)
Query: 252 YASGMAPGARIAVYKAL-YTFGGYMADVVAAVDQAVEDG-VDIISLSVGPSAVPSGPAAF 309
G A GA + + + A +QAV D +I++S+G +
Sbjct: 87 SIVGSAGGAVQQLLFYMADQSASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGT 146
Query: 310 LNALEMELLFATKAGVLVVQAAGNSGPSSSS 340
L A + A G ++G+ G +
Sbjct: 147 LQAEDRIFATAAAQGQTFSVSSGDEGVYECN 177
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 4e-04
Identities = 40/284 (14%), Positives = 88/284 (30%), Gaps = 83/284 (29%)
Query: 392 AADVC-----HRNVSTGIF--SLESCQYPELFIPALVRGKLIICTYSFDFENDDATIATV 444
A DVC + IF +L++C PE + L + + + + + + +
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK----LL---YQIDPNWTSRSDH 219
Query: 445 ADNIK-KIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKS 503
+ NIK +I + LR +++ L ++L N+Q++ +N +
Sbjct: 220 SSNIKLRIHSIQAELRRL----LKSKPYEN-CL----LVLLNVQNA-KAWNAFN---LSC 266
Query: 504 RAGQAVVFHAR-ARILDGRRAIYHGQAPVVASYSSRGPDVNNALLQTADVLKPNIMAPGS 562
+ ++ R ++ D A + + PD + +L
Sbjct: 267 K----ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD------EVKSLL--------- 307
Query: 563 SIWAAWSPSSEGD--PNLKGRNFALLSGTSMATP-HIAGVAALIKQRHPKWSP------A 613
+ D + N P ++ +A I+ W
Sbjct: 308 ---LKYLDCRPQDLPREVLTTN-----------PRRLSIIAESIRDGLATWDNWKHVNCD 353
Query: 614 AITSAMMTSAEVTDHSGSPILAQDY--------SDSPILEHVLV 649
+T+ + +S V + P + + I +L
Sbjct: 354 KLTTIIESSLNVLE----PAEYRKMFDRLSVFPPSAHIPTILLS 393
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 813 | |||
| 3i6s_A | 649 | Subtilisin-like protease; PA-domain, FN3-domain, h | 100.0 | |
| 3vta_A | 621 | Cucumisin; subtilisin-like fold, serine protease, | 100.0 | |
| 1xf1_A | 926 | C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St | 100.0 | |
| 3afg_A | 539 | Subtilisin-like serine protease; propeptide, therm | 100.0 | |
| 2z2z_A | 395 | TK-subtilisin precursor; thermococcus kodakaraensi | 100.0 | |
| 3t41_A | 471 | Epidermin leader peptide processing serine protea; | 100.0 | |
| 1r6v_A | 671 | Subtilisin-like serine protease; sandwich domain, | 100.0 | |
| 2p4e_P | 692 | Proprotein convertase subtilisin/kexin type 9; pro | 100.0 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 100.0 | |
| 1dbi_A | 280 | AK.1 serine protease; hydrolase; 1.80A {Bacillus S | 100.0 | |
| 1thm_A | 279 | Thermitase; hydrolase(serine protease); 1.37A {The | 100.0 | |
| 1gci_A | 269 | Subtilisin; hydrolase, serine protease; 0.78A {Bac | 100.0 | |
| 1r0r_E | 274 | Subtilisin carlsberg; high resolution, serine prot | 100.0 | |
| 1to2_E | 281 | Subtilisin BPN'; serine protease, hydrolase; HET: | 100.0 | |
| 3zxy_A | 282 | Subtilisin-like protein; hydrolase; 1.58A {Prochlo | 100.0 | |
| 4h6x_A | 357 | Thiazoline oxidase/subtilisin-like protease; hydro | 100.0 | |
| 2x8j_A | 327 | Intracellular subtilisin protease; hydrolase, seri | 100.0 | |
| 2ixt_A | 310 | 36KDA protease; serine protease, sphericase, subti | 100.0 | |
| 2z30_A | 320 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 100.0 | |
| 4h6w_A | 306 | N-terminal cyanobactin protease; hydrolase; 2.45A | 100.0 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 100.0 | |
| 2iy9_A | 347 | SUBA; toxin, shiga, plasmid; 1.8A {Escherichia col | 100.0 | |
| 1wmd_A | 434 | Protease; alpha-beta hydrolase fold, jelly-roll be | 100.0 | |
| 3lpc_A | 340 | APRB2; protease, subtilase, virulence factor, hydr | 100.0 | |
| 1sh7_A | 284 | Extracellular subtilisin-like serine proteinase; c | 100.0 | |
| 2pwa_A | 279 | Proteinase K; structure, alanine boronic acid, hyd | 100.0 | |
| 4dzt_A | 276 | Aqualysin-1, aqualysin-I; serine protease, calcium | 100.0 | |
| 2b6n_A | 278 | Proteinase K; S binding, substrate specificity, pr | 100.0 | |
| 1p8j_A | 471 | Furin precursor; prohormone convertase, SPC1, PACE | 100.0 | |
| 2qtw_B | 546 | Proprotein convertase subtilisin/kexin type 9; cor | 100.0 | |
| 2oxa_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 3f7m_A | 279 | Alkaline serine protease VER112; verticillium psal | 100.0 | |
| 2id4_A | 503 | Kexin; KEX2, kexin, furin, proprotein, prohormone, | 100.0 | |
| 3hjr_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 1t1e_A | 552 | Kumamolisin; proenzyme, prosubtilase, activation m | 99.9 | |
| 1ga6_A | 372 | Serine-carboxyl proteinase; serine-carboxyl protei | 99.86 | |
| 3edy_A | 544 | Tripeptidyl-peptidase 1; protease, TPP1, sedolisin | 98.98 | |
| 3cnq_P | 80 | Subtilisin BPN'; uncleaved, proenzyme, substrate c | 98.61 | |
| 2w2n_P | 114 | Proprotein convertase subtilisin/kexin type 9; hyd | 98.56 | |
| 2qtw_A | 124 | Proprotein convertase subtilisin/kexin type 9 Pro; | 98.36 | |
| 1v5i_B | 76 | POIA1, IA-1=serine proteinase inhibitor; protease- | 98.25 | |
| 3icu_A | 194 | E3 ubiquitin-protein ligase RNF128; E3 ligase, ene | 97.85 | |
| 2z30_B | 65 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 96.85 | |
| 2ys4_A | 122 | Hydrocephalus-inducing protein homolog; hydin, PAP | 96.51 | |
| 2ek8_A | 421 | Aminopeptidase; metalloproteinase, hydrolase; 1.80 | 95.48 | |
| 2r39_A | 118 | FIXG-related protein; structural GE PSI-2, protein | 94.34 | |
| 2e6j_A | 112 | Hydin protein; PAPD, structural genomics, NPPSFA, | 93.53 | |
| 3qbt_B | 140 | Inositol polyphosphate 5-phosphatase OCRL-1; prote | 93.5 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 89.62 | |
| 3qis_A | 366 | Inositol polyphosphate 5-phosphatase OCRL-1; DENT | 89.17 | |
| 2qsv_A | 220 | Uncharacterized protein; MCSG, structural genomics | 87.18 | |
| 3fed_A | 707 | Glutamate carboxypeptidase III; metallopeptidase, | 85.65 | |
| 3kas_A | 640 | Transferrin receptor protein 1; transferrin recept | 84.71 | |
| 3idu_A | 127 | Uncharacterized protein; all beta-protein, structu | 84.7 | |
| 3iib_A | 444 | Peptidase M28; YP_926796.1, structural genomics, J | 83.14 | |
| 1m1s_A | 116 | WR4; structural genomics, major sperm protein, bio | 80.4 |
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-104 Score=922.33 Aligned_cols=623 Identities=34% Similarity=0.574 Sum_probs=530.2
Q ss_pred cCCCCcccCCCC--CCCCCCCCCCCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCccc-ccccccccCCCCCCCCCCCce
Q 044171 120 TMHTPEFLGIPV--GVWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSIS-KFKGKCTTGNRFPSTACNSKI 196 (813)
Q Consensus 120 ~~~~~~~~~~~~--~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~n~ki 196 (813)
++++|++++++. .+|.. +.+|+||+|||||||||++||+|.+.+ +.+++ +|++.|+.+.+|....||+|+
T Consensus 1 Tt~s~~flgl~~~~~~w~~----~~~G~gViVaViDTGId~~Hp~f~d~g---~~p~p~~wkg~c~~g~~f~~~~cN~ki 73 (649)
T 3i6s_A 1 TTHTSDFLKLNPSSGLWPA----SGLGQDVIVAVLDSGIWPESASFQDDG---MPEIPKRWKGICKPGTQFNASMCNRKL 73 (649)
T ss_dssp CCSHHHHTTCCSSSSHHHH----HGGGTTCEEEEEESCBCTTSGGGCCTT---CCCCCTTCCCCBCCBTTBCTTSCCSSE
T ss_pred CCCChHHcCCCCchhhHhc----cCCCCCCEEEEEccCCCCCChhhccCC---CCCCccccccccccCccccccccccce
Confidence 356778888863 47776 689999999999999999999999875 44555 999999999999999999999
Q ss_pred EEEEEchhhhhhcCCCCCCCCCCCCCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCCCCHH
Q 044171 197 VGAQYFARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFGGYMA 276 (813)
Q Consensus 197 ~g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g~~~~ 276 (813)
+++++|.++..... .+...+...++|.+||||||||||||+...+.+..|...+.+.||||+|+|+++|+++..++..+
T Consensus 74 ig~~~f~~~~~~~~-~~~~~~~~~~~D~~GHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~ 152 (649)
T 3i6s_A 74 IGANYFNKGILAND-PTVNITMNSARDTDGHGTHCASITAGNFAKGVSHFGYAPGTARGVAPRARLAVYKFSFNEGTFTS 152 (649)
T ss_dssp EEEEECCHHHHHHC-TTCCCTTCSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSSTTCEEEEEECEETTEECHH
T ss_pred eeeEeccCcccccc-cccccCCCCCCCCCCcHHHHHHHHhCCCCcCccccccccCceeEECCCCEEEEEeccCCCCCCHH
Confidence 99999997765433 44445557788999999999999999987777777877788899999999999999998888899
Q ss_pred HHHHHHHHHHhCCCcEEEEccCCCCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCCCCCCCceEEEeeccc
Q 044171 277 DVVAAVDQAVEDGVDIISLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSSSILSFSPWITSIAASIT 356 (813)
Q Consensus 277 ~i~~ai~~a~~~g~~VIn~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~vitVgA~~~ 356 (813)
++++||+||+++|+||||||||.... ..+.+.++.++.+|.++|++||+||||+|+...++++.+||+|+|||++.
T Consensus 153 ~i~~Ai~~A~~~gvdVIn~SlG~~~~----~~~~~~i~~a~~~A~~~Gi~vV~AAGN~G~~~~t~~~~ap~vitVgAst~ 228 (649)
T 3i6s_A 153 DLIAAMDQAVADGVDMISISYGYRFI----PLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHT 228 (649)
T ss_dssp HHHHHHHHHHHTTCSEEEECCCCCSC----CGGGCHHHHHHHHHHHTTCEEEEECCSCTTSTTCCSCCCTTSEEEEEEEC
T ss_pred HHHHHHHHHHHcCCCEEEeCCccCCc----ccchhHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCCCCceEEEeeeec
Confidence 99999999999999999999997632 34668899999999999999999999999998889999999999999999
Q ss_pred CccccceeeecCCcEEEeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccc--cceEEEEeeccCC
Q 044171 357 DRKYNNTIKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALV--RGKLIICTYSFDF 434 (813)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~--~Gkivl~~~~~~~ 434 (813)
++.|+..+.+++++.+.+.++.+.......+|+++... ...|.. ..+....+ +|||++|.|
T Consensus 229 dr~f~~~~~lgng~~~~g~sl~~~~~~~~~~plv~~~~------------~~~C~~-~~l~~~~vdl~GkIvlc~~---- 291 (649)
T 3i6s_A 229 DRTFAGTLTLGNGLKIRGWSLFPARAFVRDSPVIYNKT------------LSDCSS-EELLSQVENPENTIVICDD---- 291 (649)
T ss_dssp SCEEEEEEEETTSCEEEEECCCSSCBCEEEEEEECCTT------------TTTCCC-HHHHTTSSSGGGCEEEECC----
T ss_pred ccceeeEEEeCCCcEEeeeecccCcccCcceeeEeccc------------cccccc-ccccccccccCCcEEEEeC----
Confidence 99999999999999999999987765567889988651 356763 34555556 999999998
Q ss_pred CCCchhHHHHHHHHHhcCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeee
Q 044171 435 ENDDATIATVADNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHAR 514 (813)
Q Consensus 435 ~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~ 514 (813)
|.+.+.+|..+++++|+.|+|++|+.. ......+.+|.+++ ..++++.|+.|+++.... +
T Consensus 292 --g~~~~~~k~~~~~~~Ga~g~i~~n~~~------~~~~~~~~~P~~~v-~~~~g~~i~~yi~s~~~~-----------~ 351 (649)
T 3i6s_A 292 --NGDFSDQMRIITRARLKAAIFISEDPG------VFRSATFPNPGVVV-NKKEGKQVINYVKNSVTP-----------T 351 (649)
T ss_dssp --CSCHHHHHHHHHHHTCSEEEEECCCGG------GGGCCCCCSCEEEE-CHHHHHHHHHHHHTCSSC-----------E
T ss_pred --CCccHHHHHHHHHhcCceEEEEecCcc------ccccccCcCCEEEE-cHHHHHHHHHHHhcCCCc-----------e
Confidence 678899999999999999999998752 23345678999888 578899999999987532 3
Q ss_pred EEEccCeeeeecCCCCeeeecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCC----CCCcceeeeccC
Q 044171 515 ARILDGRRAIYHGQAPVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNL----KGRNFALLSGTS 590 (813)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~----~~~~y~~~sGTS 590 (813)
+++....+.......+.++.||||||+.+ .++++||||+|||++|+|+++......... ....|..+||||
T Consensus 352 a~i~~~~t~~~~~~~~~va~FSSrGP~~~-----~~~ilKPDI~APG~~Ilsa~~~~~~~~~~~~d~~~~~~y~~~SGTS 426 (649)
T 3i6s_A 352 ATITFQETYLDTKPAPVVAASSARGPSRS-----YLGISKPDILAPGVLILAAYPPNVFATSIGTNILLSTDYILESGTS 426 (649)
T ss_dssp EEEEEEEEECCCSSCCEECTTSCCSSCTT-----CTTSCSCCEEEECSSEEEECCTTSCCEEETTTEEECCSEEEECSHH
T ss_pred EEEeecceeeccCCCCcccccCCCCCCCC-----CCCccCCeEEeCCCCeEeecCCCCCccccccccccccceecccccc
Confidence 44444444445567899999999999986 468999999999999999997643211000 125899999999
Q ss_pred ChhhHHHHHHHHHHHhCCCCCHHHHHHHHHccccccCCCCCcccccCCCCCccccccccCCCCCccCccccCccCcCCCC
Q 044171 591 MATPHIAGVAALIKQRHPKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGFINPARAIDPG 670 (813)
Q Consensus 591 MAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaG~vd~~~A~~~~ 670 (813)
||||||||++|||||+||+|+|++||++||+||.++++.+.|+.+.. ...+++++.||+|+||+.+|++|+
T Consensus 427 MAaPhVAGvaALlks~~P~~Spa~IksaLmtTA~~~~~~g~~i~~~~---------~~~~a~~~~~GaG~vn~~~A~~pG 497 (649)
T 3i6s_A 427 MAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKPIKDSD---------NNKAATPLDMGAGHVDPNRALDPG 497 (649)
T ss_dssp HHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCBCTTSSBCEETT---------TSSBCCHHHHTTCBCCHHHHTCCS
T ss_pred cccHHHHHHHHHHHHhCCCCCHHHHHHHHhcccccccCCCCcccccc---------cCCcCCcCCCCeeeeCHHHhcCcc
Confidence 99999999999999999999999999999999999999998887653 456788999999999999999999
Q ss_pred eeeecchhhHHHhhccCCCCCccceeeecccC----ccCCCCCCCCCCCCCcEEEec-cCcc-----EEEEEEEEecCCC
Q 044171 671 LIFNAHFQEYVQFLCAVPGVDDDYVRRVTGYG----CPTENQGWCSDLNTPSITISN-LVGS-----RKVIRRVRNVSSA 740 (813)
Q Consensus 671 lv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~n~~s~~~~~-~~~~-----~~~~~tv~N~~~~ 740 (813)
||||...+||+.|||++++ +..+|+.+++.. |.. .+.+||||||++.. ..+. ++|+|||||+|..
T Consensus 498 Lvyd~~~~dy~~flc~~~y-~~~~i~~~~~~~~~~~C~~----~~~~lNyPs~~~~~~~~~~~~~~~~~~~Rtvtnvg~~ 572 (649)
T 3i6s_A 498 LVYDATPQDYVNLLCSLNF-TEEQFKTIARSSASHNCSN----PSADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKG 572 (649)
T ss_dssp EECCCCHHHHHHHHHTTCC-CHHHHHHHHTTTSCC-CCC----CCCCCCCSSEEEEECCSSCCCCEEEEEEEEEEECC--
T ss_pred ccccCCchhHHHhhhcCCC-CcccceeeecCCCcCCCCC----chhhcCCCcEEeecccCCCCccceEEEEEEEEEeCCC
Confidence 9999999999999999987 888888887754 864 46799999999987 5666 8999999999998
Q ss_pred CeeEEEEEeCCCCcEEEEecCeEEEe-cCcEEEEEEEEEEecC-CCCeEEEEEEEEeC-CcceEEEeEEEEEe
Q 044171 741 NETYTVTVKEPSGVKVSVSPQVFKIR-GLASRELKIVLKATNS-TRAYSFGAMVLQGN-NNHIIRIPIAVYVS 810 (813)
Q Consensus 741 ~~ty~~~~~~~~g~~v~~~~~~~~v~-~g~~~~~~vt~~~~~~-~~~~~~G~i~~~~~-~~~~l~~P~~~~~~ 810 (813)
..+|++.++.|.|++|+++|++|++. .||+++|+|||+.... ...+.+|+|+|+++ +.|.+|+|++++..
T Consensus 573 ~~~y~~~v~~p~g~~v~v~P~~l~f~~~~~~~~f~v~~~~~~~~~~~~~fg~l~w~~~~~~h~vrsPi~v~~~ 645 (649)
T 3i6s_A 573 AATYKAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTIRYIGDEGQSRNVGSITWVEQNGNHSVRSPIVTSPI 645 (649)
T ss_dssp CEEEEEEEECCTTEEEEEESSEEEECC-CCEEEEEEEEEECCC---CCCEEEEEEEETTSCCEEEEEEEEEEC
T ss_pred CcEEEEEEecCCCCEEEEECCEEEEecCCCEEEEEEEEEecccCCCceEEEEEEEEcCCCCeEEEEeEEEEEc
Confidence 99999999999999999999999996 8999999999998744 45688999999974 68999999999864
|
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-97 Score=868.32 Aligned_cols=613 Identities=35% Similarity=0.582 Sum_probs=485.1
Q ss_pred cCCCCcccCCCCCCCCCCCCCCCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCccc-ccccccccCCCCCCCCCCCceEE
Q 044171 120 TMHTPEFLGIPVGVWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSIS-KFKGKCTTGNRFPSTACNSKIVG 198 (813)
Q Consensus 120 ~~~~~~~~~~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~n~ki~g 198 (813)
++++|+++|++...|.. ..+|+||+|||||||||++||+|.+.+. .+++ +|++.|+.+.+| .||+|+++
T Consensus 1 tt~s~~flGl~~~~~~~----~~~G~gViVgViDTGId~~Hp~f~d~g~---~~~~~~w~g~~~~~~~~---~~n~k~ig 70 (621)
T 3vta_A 1 TTRSWDFLGFPLTVPRR----SQVESNIVVGVLDTGIWPESPSFDDEGF---SPPPPKWKGTCETSNNF---RCNRKIIG 70 (621)
T ss_dssp CCSHHHHTTCCTTCCCC----HHHHTTCEEEEEESCBCTTSGGGCCTTC---CCCCTTCCCCBCCSSSC---CCCSSEEE
T ss_pred CCCChhHcCCCcccccc----CCCCCCCEEEEEecCCCCCChhhcCCCC---CCcccccccccccCCCc---ccCcceee
Confidence 46788999998877776 5789999999999999999999998754 3344 999999998877 59999999
Q ss_pred EEEchhhhhhcCCCCCCCCCCCCCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCCCCHHHH
Q 044171 199 AQYFARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFGGYMADV 278 (813)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g~~~~~i 278 (813)
+++|..+. .....+...|+|++||||||||||||+...+....|...+.++||||+|+|++||+|++.++..+++
T Consensus 71 ~~~~~~~~-----~~~~~~~~~p~D~~GHGTHvAgi~AG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~di 145 (621)
T 3vta_A 71 ARSYHIGR-----PISPGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCWNDGCSDTDI 145 (621)
T ss_dssp EEECCCSS-----SCCTTCCSSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSCTTSEEEEEECEETTEECHHHH
T ss_pred eeecccCC-----ccCCCCCCCCCCCCcCHHHHHHHHhCcCCCCccccccccccEEEECCCCEEEEEEeecCCCCCHHHH
Confidence 99997652 1223344678899999999999999998777677777777889999999999999999988889999
Q ss_pred HHHHHHHHhCCCcEEEEccCCCCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCCCCCCCceEEEeecccCc
Q 044171 279 VAAVDQAVEDGVDIISLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSSSILSFSPWITSIAASITDR 358 (813)
Q Consensus 279 ~~ai~~a~~~g~~VIn~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~vitVgA~~~~~ 358 (813)
++||++|+++|+||||||||+.... ....+.++.++.+|.++||++|+||||+|+...++++.+||+++|++++.++
T Consensus 146 ~~a~~~a~~~g~dVin~SlG~~~~~---~~~~~~~~~~~~~a~~~Gi~vv~aAGN~g~~~~t~~~~a~~~~~v~ast~d~ 222 (621)
T 3vta_A 146 LAAYDDAIADGVDIISLSVGGANPR---HYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDR 222 (621)
T ss_dssp HHHHHHHHHHTCSEEEECCCCCCGG---GGGGCTHHHHHHHHHTTTCEEEEECCSCCSSTTCCCCCCTTSEEEEEECCSE
T ss_pred HHHHHHHHHhCCCEEEecCCCCCCC---CcCCcHHHHHHHHHHHCCCEEEEeCCCCCCCCcccCCCCCCceeEEEeeccc
Confidence 9999999999999999999976533 3456788899999999999999999999999999999999999999999999
Q ss_pred cccceeeecCCcEEEeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCc
Q 044171 359 KYNNTIKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDD 438 (813)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~ 438 (813)
.+...+.++++..+.+.++... ....++++...+....... ......|. ...+....++|||++|.+.
T Consensus 223 ~~~~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~v~gkivl~~~~------- 290 (621)
T 3vta_A 223 KFVTQVQIGNGQSFQGVSINTF--DNQYYPLVSGRDIPNTGFD--KSTSRFCT-DKSVNPNLLKGKIVVCEAS------- 290 (621)
T ss_dssp EEEEEEEETTSCEEEEBCCCCS--CCEEECEEETTTSCCTTCC--HHHHTTTC-TTCSCGGGTTTSEEECSSC-------
T ss_pred cceeeEEeccCceeeeeecccC--CCccccccccccccccccc--cccccccc-ccccccccccceEEEEecC-------
Confidence 9999999999999988876543 3556777766554432221 12234454 4567788999999999874
Q ss_pred hhHHHHHHHHHhcCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEc
Q 044171 439 ATIATVADNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARIL 518 (813)
Q Consensus 439 ~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 518 (813)
+..+..+....|+.++|++++... ....+.+|...+ ...++..++.|+....... +.+.
T Consensus 291 --~~~~~~~~~~~Ga~gvi~~~~~~~-------~~~~~~lP~~~v-~~~~g~~i~~~~~~~~~~~-----------a~~~ 349 (621)
T 3vta_A 291 --FGPHEFFKSLDGAAGVLMTSNTRD-------YADSYPLPSSVL-DPNDLLATLRYIYSIRSPG-----------ATIF 349 (621)
T ss_dssp --CCHHHHHHHHTTCSEEEEECSCCS-------SCCCCSSSEEEE-CHHHHHHHHHHHHHHSSCC-----------EEEC
T ss_pred --CChhHHhhhhcceeEEEEEecCCC-------cccccccceEEE-CHHHHHHHHHHHhccCCcc-----------eEEe
Confidence 224566778889999999987651 123456888877 5678889999887764321 2222
Q ss_pred cCeeeeecCCCCeeeecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHH
Q 044171 519 DGRRAIYHGQAPVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAG 598 (813)
Q Consensus 519 ~~~~~~~~~~~~~~s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG 598 (813)
. .........+.++.||||||+.. .++++||||+|||++|+|+++..........+..|..|||||||||||||
T Consensus 350 ~-~~~~~~~~~~~va~FSSrGP~~~-----~~~ilKPDI~APG~~Ilsa~~~~~~~~~~~~~~~y~~~SGTSMAaPhVAG 423 (621)
T 3vta_A 350 K-STTILNASAPVVVSFSSRGPNRA-----TKDVIKPDISGPGVEILAAWPSVAPVGGIRRNTLFNIISGTSMSCPHITG 423 (621)
T ss_dssp C-CEEEECTTCCCBCTTSCCCSCTT-----CTTSCSCCEEEECSSEEEECCSSSCBTTBCCCCSEEEECSHHHHHHHHHH
T ss_pred c-ceEeccCCCCceeeecCCCCCCC-----CCCeeccccccCCcceEeecCccccccCcCCCCcceEecCccccchhhhh
Confidence 1 12234556789999999999875 35899999999999999999865433333345689999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHccccccCCCCCcccccCCCCCccccccccCCCCCccCccccCccCcCCCCeeeecchh
Q 044171 599 VAALIKQRHPKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGFINPARAIDPGLIFNAHFQ 678 (813)
Q Consensus 599 ~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaG~vd~~~A~~~~lv~~~~~~ 678 (813)
++|||||+||+|+|++||++||+||++++..+ .++.+++||+|+||+.+|++|+||||+...
T Consensus 424 vaALl~q~~P~~spa~IksaLmtTA~~~~~~~------------------~~~~~~~~GaG~v~~~~A~~pGLvyd~~~~ 485 (621)
T 3vta_A 424 IATYVKTYNPTWSPAAIKSALMTTASPMNARF------------------NPQAEFAYGSGHVNPLKAVRPGLVYDANES 485 (621)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHHHTCBCCCTTT------------------CTTTHHHHTTCBCCHHHHSCCSEECCCCGG
T ss_pred HHHHHHHHCCCCCHHHHHHHHHhcCCcccccC------------------CCCCchhcCCCccCHHHhcCCCeEeecccc
Confidence 99999999999999999999999999876543 355678999999999999999999999999
Q ss_pred hHHHhhccCCCCCccceeeecc--cCccCCCCCCCCCCCCCcEEEe---ccCccEEEEEEEEecCCCCeeEEEEEeCCCC
Q 044171 679 EYVQFLCAVPGVDDDYVRRVTG--YGCPTENQGWCSDLNTPSITIS---NLVGSRKVIRRVRNVSSANETYTVTVKEPSG 753 (813)
Q Consensus 679 ~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~n~~s~~~~---~~~~~~~~~~tv~N~~~~~~ty~~~~~~~~g 753 (813)
||+.|||++++ +..+++..++ ..|.........+||||||++. +...+++++|||||+|....||+++++.|.|
T Consensus 486 dy~~~lc~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~lN~pS~~v~~~~~~~~~~t~~rtvtnvg~~~~ty~~~v~~p~g 564 (621)
T 3vta_A 486 DYVKFLCGQGY-NTQAVRRITGDYSACTSGNTGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQG 564 (621)
T ss_dssp GCC------------------------------CGGGSCCSSEEEECCSSCCEEEEEEEEEEECSSSCEEEEEEEECCSS
T ss_pred hhhhhhcccCC-CchhheeeeccccccCCCCcCcccccccccEEEEccCCCceEEEEEEEEEccCCCCeEEEEEEECCCC
Confidence 99999999976 7788877775 4566555667889999999986 4456789999999999999999999999999
Q ss_pred cEEEEecCeEEEe-cCcEEEEEEEEEEecCCCCeEEEEEEEEeCCcceEEEeEEEEEe
Q 044171 754 VKVSVSPQVFKIR-GLASRELKIVLKATNSTRAYSFGAMVLQGNNNHIIRIPIAVYVS 810 (813)
Q Consensus 754 ~~v~~~~~~~~v~-~g~~~~~~vt~~~~~~~~~~~~G~i~~~~~~~~~l~~P~~~~~~ 810 (813)
++|+++|++|+++ .||+++|+|||+.. ..+.+++|+|+|+ +++|.+|+|++|++.
T Consensus 565 v~v~V~P~~l~f~~~~~~~~~~vt~~~~-~~~~~~~g~l~w~-d~~h~Vr~Pi~v~~~ 620 (621)
T 3vta_A 565 LTISVNPNVLSFNGLGDRKSFTLTVRGS-IKGFVVSASLVWS-DGVHYVRSPITITSL 620 (621)
T ss_dssp EEEEEESSEEEECSTTCEEEEEEEEEEC-CCSSEEEEEEEEE-CSSCCCEEEEEEECC
T ss_pred cEEEEecCEEEEcCCCcEEEEEEEEEec-CCCceEEEEEEEE-cCCEEEEeCEEEEEe
Confidence 9999999999996 68999999999864 3567999999997 578999999999863
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-77 Score=727.37 Aligned_cols=544 Identities=19% Similarity=0.291 Sum_probs=405.3
Q ss_pred ccCCCCCCCCCCCCCCCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCC----------CCCCCCCCCc
Q 044171 126 FLGIPVGVWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGN----------RFPSTACNSK 195 (813)
Q Consensus 126 ~~~~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~n~k 195 (813)
+++++. +|.. +++|+||+|||||||||++||+|.... .|++.|..+. .....+||+|
T Consensus 3 ~i~~~~-~w~~----~~~G~GV~VaVIDTGId~~Hp~f~~~~--------~~~~~~~~~~~~~~~~~~~g~~~g~~~n~K 69 (926)
T 1xf1_A 3 PSQVKT-LQEK----AGKGAGTVVAVIDAGFDKNHEAWRLTD--------KTKARYQSKEDLEKAKKEHGITYGEWVNDK 69 (926)
T ss_dssp TTCCHH-HHHH----HCSCTTCEEEEEESCCTTCCCCCSCCS--------CCCSSCCHHHHHHHHHHTTTCCCCBCCSSS
T ss_pred ccccHH-HHhc----cCCCCCcEEEEEecCCCCCCHhHcCCC--------CCcccccchhhhcccccccCcccccccCcc
Confidence 455554 7876 689999999999999999999999653 4555554321 1123489999
Q ss_pred eEEEEEchhhhhhcCCCCCCCCCCCCCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC--C
Q 044171 196 IVGAQYFARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG--G 273 (813)
Q Consensus 196 i~g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g--~ 273 (813)
++++++|.++ ....|++||||||||||||+...+.. +.+.+.||||+|+|+++|++++.+ +
T Consensus 70 ii~~~~~~~~-------------~~~~D~~gHGThVAgiiAg~~~~~~~----~~~~~~GvAP~A~l~~~kv~~~~g~~~ 132 (926)
T 1xf1_A 70 VAYYHDYSKD-------------GKTAVDQEHGTHVSGILSGNAPSETK----EPYRLEGAMPEAQLLLMRVEIVNGLAD 132 (926)
T ss_dssp CCEEEESCCC-------------SCCCCSSTTTTHHHHSSCCCCCCCCS----CSCCTTTTCTTSEEEEEECCCCSCHHH
T ss_pred cceeeccccC-------------CCCCCCCCcHHHHHHHHhCCCccCcc----cCCceEEECCCCEEEEEEeecCCCCCC
Confidence 9999999753 11228899999999999998643221 124678999999999999998766 4
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEccCCCCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCC---------------
Q 044171 274 YMADVVAAVDQAVEDGVDIISLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSS--------------- 338 (813)
Q Consensus 274 ~~~~i~~ai~~a~~~g~~VIn~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~--------------- 338 (813)
..+++++||+||+++|+||||||||+..... ..+.+.++.++..|.++|++||+||||+|...
T Consensus 133 ~~~~i~~Ai~~Ai~~gvdVIn~SlG~~~~~~--~~~~~~~~~ai~~A~~~GilvV~AAGN~G~~g~~~~~~~~~~p~~~t 210 (926)
T 1xf1_A 133 YARNYAQAIRDAINLGAKVINMSFGNAALAY--ANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGV 210 (926)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECCSSCCCTT--CCCCHHHHHHHHHHHHTTCEEEEECCSCCBTTCTTSCCBTTCCCCBC
T ss_pred cHHHHHHHHHHHHHhCCcEEEECCCCCCCCc--cccccHHHHHHHHHHhCCcEEEEeCCCCCCcCCccccccccCCCcce
Confidence 5578999999999999999999999764321 22456788899999999999999999999632
Q ss_pred CCCCCCCCceEEEeecccCccccceeee-cCCcEEEeeecC--CCCCCCceeeeEEecccccCcccccccccccCCCCCC
Q 044171 339 SSILSFSPWITSIAASITDRKYNNTIKL-ANGHSFSGIGLA--PPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPEL 415 (813)
Q Consensus 339 ~~~~~~~~~vitVgA~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~ 415 (813)
...|+.+||+|+|||++.++.+...+.+ +++....+.++. ........+++++... .|. ...
T Consensus 211 v~~PA~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~--------------g~~-~~~ 275 (926)
T 1xf1_A 211 VGTPAAADSTLTVASYSPDKQLTETVRVKTADQQDKEMPVLSTNRFEPNKAYDYAYANR--------------GTK-EDD 275 (926)
T ss_dssp CCSCTTTCCSEEEEEEBCSEEEEEEEEEECTTSCEEEEEEEEESCCCTTCCEEEEECTT--------------SCS-TTT
T ss_pred ecCcccCCceEEEeccccccccccceEEEcCCCcceeeEEEecCCCCCCceEEEEECCC--------------CCC-ccc
Confidence 2234568999999999999988887776 444333333321 1112346788887643 243 223
Q ss_pred cCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHH
Q 044171 416 FIPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEY 495 (813)
Q Consensus 416 ~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~ 495 (813)
+ .+++|||++|.| |.|.+.+|..+++.+|+.++|++|+..+. ..........+|...+ +.+++..|.+
T Consensus 276 ~--~~v~Gkivl~~r------g~~~~~~k~~~~~~~Ga~gvi~~n~~~~~--~~~~~~~~~~iP~~~i-~~~~g~~l~~- 343 (926)
T 1xf1_A 276 F--KDVKGKIALIER------GDIDFKDKIAKAKKAGAVGVLIYDNQDKG--FPIELPNVDQMPAAFI-SRKDGLLLKD- 343 (926)
T ss_dssp T--TTCTTSEEEEEC------CSSCHHHHHHHHHHTTCSEEEEECSSTTC--CCEECCCSTTCCEEEE-CHHHHHHHHH-
T ss_pred h--hhcCCeEEEEEC------CCCCHHHHHHHHHhCCCcEEEEEecCCCC--cccccCccccccEEEE-eHHHHHHHHh-
Confidence 3 579999999988 67889999999999999999999986521 1111234456888877 5566766663
Q ss_pred HhhcCccCCCCceeeeeeeEEEccCeeeeecCCCCeeeecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCC
Q 044171 496 YNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGD 575 (813)
Q Consensus 496 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~ 575 (813)
.. ...+.|.. ..........+.++.||||||+.+ +++||||+|||++|+|+++
T Consensus 344 ---~~-----~~ti~~~~------~~~~~~~~~~~~~a~FSSrGp~~~-------~~lKPDI~APG~~I~sa~~------ 396 (926)
T 1xf1_A 344 ---NP-----QKTITFNA------TPKVLPTASGTKLSRFSSWGLTAD-------GNIKPDIAAPGQDILSSVA------ 396 (926)
T ss_dssp ---CS-----SCEEEECS------SCEEEECSSCSBCCTTSCCCBCTT-------SCBSCCEEEECCCEEESSS------
T ss_pred ---CC-----ceEEEecc------cceecccCCcceeccccCCCCCCC-------CccCceEECCCCCEEeecc------
Confidence 11 12233322 222233455679999999999976 7999999999999999985
Q ss_pred CCCCCCcceeeeccCChhhHHHHHHHHHHH----hCCCCCHHH----HHHHHHccccccCCCCCcccccCCCCCcccccc
Q 044171 576 PNLKGRNFALLSGTSMATPHIAGVAALIKQ----RHPKWSPAA----ITSAMMTSAEVTDHSGSPILAQDYSDSPILEHV 647 (813)
Q Consensus 576 ~~~~~~~y~~~sGTSMAaP~VAG~aALl~q----~~p~~s~~~----ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~ 647 (813)
++.|..+||||||||||||++|||+| +||+|+|+| ||++||+||+++...+ .
T Consensus 397 ----~~~y~~~SGTSMAaPhVAG~aALl~q~~k~~~P~~sp~~~~~~Iks~L~~TA~~~~~~~----------------~ 456 (926)
T 1xf1_A 397 ----NNKYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALYDED----------------E 456 (926)
T ss_dssp ----CSSSCEEESCTTHHHHHHHHHHHHHHHHHHSSSSSHHHHHHHHHHHHHHHHSBCCEEGG----------------G
T ss_pred ----CCcceecCccchhHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhcCCCcccCC----------------C
Confidence 34899999999999999999999964 699999997 9999999999874321 1
Q ss_pred ccCCCCCccCccccCccCcCCCCeeeecchhhHHHhhccCCCCCccceeeecccCccCCCCCCCCCCCCCcEEEeccCcc
Q 044171 648 LVHATPFDFGAGFINPARAIDPGLIFNAHFQEYVQFLCAVPGVDDDYVRRVTGYGCPTENQGWCSDLNTPSITISNLVGS 727 (813)
Q Consensus 648 ~~~~~~~~~GaG~vd~~~A~~~~lv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~n~~s~~~~~~~~~ 727 (813)
...+++++||+|+||+.+|+++.+ |+|..++ +.++|.+.++.++
T Consensus 457 ~~~~~~~~~G~G~vn~~~A~~~~~-----------~l~~~~~-------------------------~~~~i~l~~~~~~ 500 (926)
T 1xf1_A 457 KAYFSPRQQGAGAVDAKKASAATM-----------YVTDKDN-------------------------TSSKVHLNNVSDK 500 (926)
T ss_dssp TEECCHHHHTTCBCCHHHHHHCSE-----------EEEESSS-------------------------SCSCEEEEEECSE
T ss_pred CccCChhccCCCccCHHHhcCCCe-----------EEEcCCC-------------------------CcceeeccccCcc
Confidence 224567899999999999999855 4565432 1124566666678
Q ss_pred EEEEEEEEecCCCC--eeEEEEEeC--CCCcEEEEe--------cCeEEEecCcEEEEEEEEEEec---------CCCCe
Q 044171 728 RKVIRRVRNVSSAN--ETYTVTVKE--PSGVKVSVS--------PQVFKIRGLASRELKIVLKATN---------STRAY 786 (813)
Q Consensus 728 ~~~~~tv~N~~~~~--~ty~~~~~~--~~g~~v~~~--------~~~~~v~~g~~~~~~vt~~~~~---------~~~~~ 786 (813)
.+++|||+|+|+++ .+|++.+.. +.+..+++. +++|||+||++++|+|||+++. ..+.+
T Consensus 501 ~~~~~tv~N~g~~~~~~~y~~~v~~~~~~~~~~~v~p~~l~~~~~~~vtv~ag~~~~~~vt~~~~~~~~~~~~~~~~~~~ 580 (926)
T 1xf1_A 501 FEVTVNVHNKSDKPQELYYQATVQTDKVDGKHFALAPKVLYETSWQKITIPANSSKQVTVPIDASRFSKDLLAQMKNGYF 580 (926)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEEEEEEETTEEEEEEEEEEECCCEEEEECTTEEEEEEEEEECHHHHHHHHHHSTTCEE
T ss_pred EEEEEEEEEeCCCceeEEEEEEEEeccCCCceEEeccceeEeccCCeEEECCCCEEEEEEEEEcCccchhhcccccCCcE
Confidence 88999999999865 556666554 556666654 4578999999999999999862 13458
Q ss_pred EEEEEEEEeCC-cc-eEEEeEEEEEec
Q 044171 787 SFGAMVLQGNN-NH-IIRIPIAVYVST 811 (813)
Q Consensus 787 ~~G~i~~~~~~-~~-~l~~P~~~~~~~ 811 (813)
++|+|+|++++ .+ .||+||+++.++
T Consensus 581 ~~G~i~~~~~~~~~~~v~~P~~~~~g~ 607 (926)
T 1xf1_A 581 LEGFVRFKQDPTKEELMSIPYIGFRGD 607 (926)
T ss_dssp EEEEEEEESSTTSCCCEEEEEEEEESC
T ss_pred EEEEEEEEeCCCCCCEEEeeeEEEecC
Confidence 99999999643 34 599999998865
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-58 Score=530.72 Aligned_cols=336 Identities=33% Similarity=0.572 Sum_probs=269.7
Q ss_pred eeeEEEeccceeEEEEEeCHHHHHHHH-----------hcCcCeeEEEeCccceeccCC-----CCcccCCCCCCCCCCC
Q 044171 75 YTKLYSYTHLLSGFAIHIESEEAVSTL-----------QNAKGVRIIHEDIKMEKLTMH-----TPEFLGIPVGVWPTLG 138 (813)
Q Consensus 75 ~~~~~~~~~~~~g~~~~~~~~~~~~~L-----------~~~p~V~~v~~~~~~~~~~~~-----~~~~~~~~~~~w~~~~ 138 (813)
.++.++|. .++||+++++.+++ ++| +++|+|++|+++..+++.... ....++++. +|+.
T Consensus 60 ~~v~~~~~-~~~g~~~~l~~~~~-~~l~~~~~~~~~~~~~~~~V~~v~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~-- 134 (539)
T 3afg_A 60 AKIKYNYH-IIPALAVKIKVKDL-LIIAGLMDTGYFGNAQLSGVQFIQEDYVVKVAVETEGLDESAAQVMATN-MWNL-- 134 (539)
T ss_dssp CEEEEECS-SSSEEEEEEEHHHH-HHHTTCSCCC---CCCCTTEEEEEECCEEECC-----------CCBCSC-CBCC--
T ss_pred CeEEEEee-eeeEEEEEeCHHHH-HHHHhhccccccccccCCCeeEEEecccccccCccccCCccccccCcHh-HHhc--
Confidence 57788886 79999999999998 999 899999999999988764321 122334333 6765
Q ss_pred CCCCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCCCCCCCC
Q 044171 139 GAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDY 218 (813)
Q Consensus 139 ~~~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~ 218 (813)
+++|+||+|||||||||++||+|.+ ++++.++|.++ .
T Consensus 135 --g~~G~gv~VaViDtGid~~Hpdl~~-----------------------------~i~~~~d~~~~------------~ 171 (539)
T 3afg_A 135 --GYDGSGITIGIIDTGIDASHPDLQG-----------------------------KVIGWVDFVNG------------K 171 (539)
T ss_dssp --SCCCTTCEEEEEESBCCTTSGGGTT-----------------------------TEEEEEETTTC------------C
T ss_pred --CCCCCCcEEEEEecCCCCCChHHhC-----------------------------CEeeeEECCCC------------C
Confidence 7899999999999999999999975 46666777543 1
Q ss_pred CCCCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-CCHHHHHHHHHHHHhC----CCcEE
Q 044171 219 ASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-GYMADVVAAVDQAVED----GVDII 293 (813)
Q Consensus 219 ~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~----g~~VI 293 (813)
..+.|++||||||||||+|.... ..+.+.||||+|+|+.+|++++.+ +..+++++||+||+++ |++||
T Consensus 172 ~~~~D~~gHGThVAgiiag~~~~-------~~g~~~GvAp~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~~~~g~~Vi 244 (539)
T 3afg_A 172 TTPYDDNGHGTHVASIAAGTGAA-------SNGKYKGMAPGAKLVGIKVLNGQGSGSISDIINGVDWAVQNKDKYGIKVI 244 (539)
T ss_dssp SSCCBSSSHHHHHHHHHHCCCGG-------GTTTTCCSCTTCEEEEEECSCTTSEEEHHHHHHHHHHHHHTHHHHTEEEE
T ss_pred CCCCCCCCCHHHHHHHHhCcCcc-------CCCCEEEECCCCEEEEEEeecCCCCcCHHHHHHHHHHHHhhhhhcCCcEE
Confidence 34678899999999999987432 123468999999999999999877 7889999999999986 89999
Q ss_pred EEccCCCCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCC--CCCCCCCceEEEeecccCccccceeeecCCcE
Q 044171 294 SLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSS--SILSFSPWITSIAASITDRKYNNTIKLANGHS 371 (813)
Q Consensus 294 n~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~--~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~ 371 (813)
|||||...... ..+.+..+++++.++|++||+||||+|.... ..|+..+++|+|||++.+
T Consensus 245 n~SlG~~~~~~----~~~~l~~ai~~a~~~GvlvV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~-------------- 306 (539)
T 3afg_A 245 NLSLGSSQSSD----GTDSLSQAVNNAWDAGLVVVVAAGNSGPNKYTVGSPAAASKVITVGAVDKY-------------- 306 (539)
T ss_dssp EECCCCCSCCC----SCSHHHHHHHHHHHTTCEEEEECCSCCSSSSCCCTTTTCSSSEEEEEECTT--------------
T ss_pred EeCCCCCCCCc----cchHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCccCCceEEEeeecCC--------------
Confidence 99999765321 2367888889999999999999999997543 457788999999984310
Q ss_pred EEeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhc
Q 044171 372 FSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKI 451 (813)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~ 451 (813)
T Consensus 307 -------------------------------------------------------------------------------- 306 (539)
T 3afg_A 307 -------------------------------------------------------------------------------- 306 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeeeeecCCCCe
Q 044171 452 EAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPV 531 (813)
Q Consensus 452 Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 531 (813)
+.
T Consensus 307 ------------------------------------------------------------------------------~~ 308 (539)
T 3afg_A 307 ------------------------------------------------------------------------------DV 308 (539)
T ss_dssp ------------------------------------------------------------------------------SC
T ss_pred ------------------------------------------------------------------------------cc
Confidence 13
Q ss_pred eeecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHHHHHHHhCCCCC
Q 044171 532 VASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWS 611 (813)
Q Consensus 532 ~s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~s 611 (813)
++.||||||+.+ +++||||+|||++|+++++...... ......|..++|||||||||||++|||+|++|+|+
T Consensus 309 ~a~fSs~Gp~~~-------~~~kpdi~APG~~I~s~~~~~~~~~-~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s 380 (539)
T 3afg_A 309 ITDFSSRGPTAD-------NRLKPEVVAPGNWIIAARASGTSMG-QPINDYYTAAPGTAMATPHVAGIAALLLQAHPSWT 380 (539)
T ss_dssp BCSSSCCCCCTT-------CBCCCSEEEECSSEEEECCTTCCCS-EECSSSEEEECSHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred cccccCCCCCCC-------CCCcccEecCcCCEEeeccCCCCCC-CCCcccccccCchHHHHHHHHHHHHHHHHHCCCCC
Confidence 789999999986 7999999999999999986532100 00123699999999999999999999999999999
Q ss_pred HHHHHHHHHccccccCCCCCcccccCCCCCccccccccCCCCCccCccccCccCcCCC
Q 044171 612 PAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGFINPARAIDP 669 (813)
Q Consensus 612 ~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaG~vd~~~A~~~ 669 (813)
+++||++|++||+++...+ .+++.||+|++|+.+|++.
T Consensus 381 ~~~vk~~L~~tA~~~~~~~--------------------~~~~~~G~G~vn~~~Al~~ 418 (539)
T 3afg_A 381 PDKVKTALIETADIVKPDE--------------------IADIAYGAGRVNAYKAAYY 418 (539)
T ss_dssp HHHHHHHHHHHSBCSSGGG--------------------CSBTTTBTCBCCHHHHHTG
T ss_pred HHHHHHHHHhhCccCCCCC--------------------CCccCccCCccCHHHHhhh
Confidence 9999999999998764211 2345899999999999985
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-57 Score=501.61 Aligned_cols=318 Identities=27% Similarity=0.439 Sum_probs=258.2
Q ss_pred ceeeEEEeccceeEEEEEeCHHHHHHHHhcCcCeeEEEeCccceeccCCC-----------C-----cccCCCCCCCCCC
Q 044171 74 SYTKLYSYTHLLSGFAIHIESEEAVSTLQNAKGVRIIHEDIKMEKLTMHT-----------P-----EFLGIPVGVWPTL 137 (813)
Q Consensus 74 ~~~~~~~~~~~~~g~~~~~~~~~~~~~L~~~p~V~~v~~~~~~~~~~~~~-----------~-----~~~~~~~~~w~~~ 137 (813)
+.++.++|. .+++|+++++.+++ ++|+++|+|++|+++..+++..... . +.++.+. +|..
T Consensus 23 g~~v~~~~~-~~~~~~~~~~~~~~-~~L~~~p~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~i~~~~-~w~~- 98 (395)
T 2z2z_A 23 GGHIVYQFK-LIPAVVVDVPANAV-GKLKKMPGVEKVEFDHQAVLLGKPSWLGGGSTQPAQTIPWGIERVKAPS-VWSI- 98 (395)
T ss_dssp TCEEEEECS-SSSEEEEEEEGGGH-HHHHTSTTEEEEEECCEEEECCEECC------CCSCCCCHHHHHTTCGG-GGGT-
T ss_pred CCEEEEEec-cCCEEEEEECHHHH-HHHHcCCCceEEEEeeeecccCCCCcccccccCccccCCcchhhcCHHH-HHhh-
Confidence 457788887 58999999999888 9999999999999999887643211 0 1223332 5665
Q ss_pred CCCCCCCCC--cEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCCCCC
Q 044171 138 GGAEFSGEG--VVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNST 215 (813)
Q Consensus 138 ~~~~~~G~g--v~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~ 215 (813)
+ +|+| |+|||||||||++||+|.++ +..+++|..+.. .
T Consensus 99 ---~-~G~g~~v~VaViDtGid~~Hp~l~~~-----------------------------~~~~~~~~~~~~-----~-- 138 (395)
T 2z2z_A 99 ---T-DGSVSVIQVAVLDTGVDYDHPDLAAN-----------------------------IAWCVSTLRGKV-----S-- 138 (395)
T ss_dssp ---C-SSCCTTCEEEEEESCBCTTCTTTGGG-----------------------------EEEEEECGGGCC-----B--
T ss_pred ---c-CCCCCcEEEEEEcCCCCCCChhHhhc-----------------------------cccCccccCCcc-----c--
Confidence 4 9999 99999999999999999963 445555554310 0
Q ss_pred CCCCCCCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-CCHHHHHHHHHHHHhC------
Q 044171 216 RDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-GYMADVVAAVDQAVED------ 288 (813)
Q Consensus 216 ~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~------ 288 (813)
.+..++.|++||||||||||+|..+. .++.||||+|+|+.+|++++.+ +..+++++||+||+++
T Consensus 139 ~~~~~~~d~~gHGT~vAgiia~~~n~---------~g~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~~~~~~ 209 (395)
T 2z2z_A 139 TKLRDCADQNGHGTHVIGTIAALNND---------IGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVAD 209 (395)
T ss_dssp CCHHHHBCSSSHHHHHHHHHHCCCSS---------SSCCCSSTTCEEEEEECSCTTSEEEHHHHHHHHHHHHHTTTTCSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHeecCC---------CceEEECCCCEEEEEEEecCCCCccHHHHHHHHHHHHhCcccccc
Confidence 00012457899999999999997321 2368999999999999999877 7889999999999998
Q ss_pred --------------CCcEEEEccCCCCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCCCCCCCceEEEeec
Q 044171 289 --------------GVDIISLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSSSILSFSPWITSIAAS 354 (813)
Q Consensus 289 --------------g~~VIn~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~vitVgA~ 354 (813)
+++|||||||.... ...+..+++++.++|++||+||||+|.....+|+..+++|+|||+
T Consensus 210 ~~~~~~~~~~~~~~~~~Vin~S~G~~~~-------~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~ 282 (395)
T 2z2z_A 210 KDGDGIIAGDPDDDAAEVISMSLGGPAD-------DSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAI 282 (395)
T ss_dssp TTCSSCCTTCTTSCCCSEEEECEEBSCC-------CHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEE
T ss_pred ccccccccccccCCCCeEEEecCCCCCC-------CHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccCCCCEEEEEEe
Confidence 99999999997542 256778888999999999999999998877889999999999995
Q ss_pred ccCccccceeeecCCcEEEeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCC
Q 044171 355 ITDRKYNNTIKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDF 434 (813)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~ 434 (813)
+.+
T Consensus 283 ~~~----------------------------------------------------------------------------- 285 (395)
T 2z2z_A 283 DSN----------------------------------------------------------------------------- 285 (395)
T ss_dssp CTT-----------------------------------------------------------------------------
T ss_pred cCC-----------------------------------------------------------------------------
Confidence 311
Q ss_pred CCCchhHHHHHHHHHhcCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeee
Q 044171 435 ENDDATIATVADNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHAR 514 (813)
Q Consensus 435 ~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~ 514 (813)
T Consensus 286 -------------------------------------------------------------------------------- 285 (395)
T 2z2z_A 286 -------------------------------------------------------------------------------- 285 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEccCeeeeecCCCCeeeecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhh
Q 044171 515 ARILDGRRAIYHGQAPVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATP 594 (813)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP 594 (813)
+.++.||++|| +|+|||++|+|+++ ++.|..++|||||||
T Consensus 286 ---------------~~~a~fS~~G~---------------~v~APG~~i~s~~~----------~~~y~~~sGTS~AaP 325 (395)
T 2z2z_A 286 ---------------DNIASFSNRQP---------------EVSAPGVDILSTYP----------DDSYETLMGTAMATP 325 (395)
T ss_dssp ---------------SCBCTTSCSSC---------------SEEEECSSEEEEET----------TTEEEEEESHHHHHH
T ss_pred ---------------CCCCcccCCCC---------------CEEeCCCCeeeecC----------CCceEecCCHHHHHH
Confidence 23688999997 57999999999984 358999999999999
Q ss_pred HHHHHHHHHHHhCC-------------CCCHHHHHHHHHccccccCCCCCcccccCCCCCccccccccCCCCCccCcccc
Q 044171 595 HIAGVAALIKQRHP-------------KWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGFI 661 (813)
Q Consensus 595 ~VAG~aALl~q~~p-------------~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaG~v 661 (813)
||||++|||+|++| .|++.+||++|++||+++...+ .++.||||+|
T Consensus 326 ~VaG~aAll~~~~p~~~~~~~~~~~~~~ls~~~v~~~L~~tA~~~~~~g---------------------~~~~~G~G~v 384 (395)
T 2z2z_A 326 HVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTG---------------------WDADYGYGVV 384 (395)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCCCCTTCCSSSSHHHHHHHHSBCCSSSS---------------------SBTTTBTCBC
T ss_pred HHHHHHHHHHHhCccccccccccccccCCCHHHHHHHHHhhccccCCCC---------------------CCCCccCcee
Confidence 99999999999999 9999999999999999874322 2358999999
Q ss_pred CccCcCCC
Q 044171 662 NPARAIDP 669 (813)
Q Consensus 662 d~~~A~~~ 669 (813)
|+.+|++.
T Consensus 385 d~~~A~~~ 392 (395)
T 2z2z_A 385 RAALAVQA 392 (395)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 99999863
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-54 Score=492.43 Aligned_cols=335 Identities=21% Similarity=0.292 Sum_probs=258.5
Q ss_pred ceeeEEEeccceeEEEEEeCHHHHHHHHhc-CcCeeEEEeCccceeccCCCCc---------------ccCCCCCCCCCC
Q 044171 74 SYTKLYSYTHLLSGFAIHIESEEAVSTLQN-AKGVRIIHEDIKMEKLTMHTPE---------------FLGIPVGVWPTL 137 (813)
Q Consensus 74 ~~~~~~~~~~~~~g~~~~~~~~~~~~~L~~-~p~V~~v~~~~~~~~~~~~~~~---------------~~~~~~~~w~~~ 137 (813)
+.++.++|. .+++|+++++.+++ ++|++ +|+|++|+++..+++....... .+..+..+|+.
T Consensus 65 g~~v~~~~~-~~~~~~~~~~~~~~-~~L~~~~p~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~~i~~~~~~~~~- 141 (471)
T 3t41_A 65 SLNVVYNIP-ELHVAQIKMTKMHA-NALANYKNDIKYINATCSTCITSEKTIDRTSNESLFSRQWDMNKITNNGASYDD- 141 (471)
T ss_dssp TCEEEEEEG-GGTEEEEEECHHHH-HHHHTCTTTEEEEEECCSSCBCCCCCCCC---CCSCCCCHHHHTTTTTTGGGGG-
T ss_pred CCEEEEecC-CccEEEEEeCHHHH-HHHHhcCCCCcEEEecceeccccccccccCCCCccccccccHhhccCcHHHHhc-
Confidence 456778875 58999999999998 99999 9999999999888775432211 11112235554
Q ss_pred CCCCCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCCCCCCC
Q 044171 138 GGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRD 217 (813)
Q Consensus 138 ~~~~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 217 (813)
+++|+||+|||||||||++||+|.++...... .++....|... ..+...+
T Consensus 142 ---~~~G~gv~VaViDtGid~~Hp~~~~~~~~~~~----------------------~~~~~~~~~~~-----~~~~~~~ 191 (471)
T 3t41_A 142 ---LPKHANTKIAIIDTGVMKNHDDLKNNFSTDSK----------------------NLVPLNGFRGT-----EPEETGD 191 (471)
T ss_dssp ---CCSSCCCCEEEEESCCCTTCTTTTTTBCTTCE----------------------ECCCTTCGGGC-----CTTCCCC
T ss_pred ---cCCCCCcEEEEEeCCCCCCChhHhcCcccCCc----------------------ccccCCCccCC-----CcccCCC
Confidence 68999999999999999999999986432100 00000001100 0111122
Q ss_pred CCCCCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCCCCHHHHHHHHHHHHhCCCcEEEEcc
Q 044171 218 YASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFGGYMADVVAAVDQAVEDGVDIISLSV 297 (813)
Q Consensus 218 ~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~~VIn~S~ 297 (813)
...+.|++||||||||||+|+. .+.||||+|+|+.+|++++..+..+++++||+||+++|++||||||
T Consensus 192 ~~~~~d~~gHGT~vAgiiaa~g------------~~~GvAp~a~l~~~kv~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~ 259 (471)
T 3t41_A 192 VHDVNDRKGHGTMVSGQTSANG------------KLIGVAPNNKFTMYRVFGSKKTELLWVSKAIVQAANDGNQVINISV 259 (471)
T ss_dssp TTCCCCSSSHHHHHHHHHHCBS------------SSBCSSTTSCEEEEECCSSSCCCHHHHHHHHHHHHHTTCSEEEECC
T ss_pred CCCCcCCCCccchhhheeecCC------------ceeEECCCCeEEEEEeccCCCCcHHHHHHHHHHHHhCCCCEEEeCC
Confidence 2456789999999999999873 2579999999999999988668889999999999999999999999
Q ss_pred CCCCCC----CC-----ChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCCC------------------CCCCCCceEE
Q 044171 298 GPSAVP----SG-----PAAFLNALEMELLFATKAGVLVVQAAGNSGPSSSS------------------ILSFSPWITS 350 (813)
Q Consensus 298 G~~~~~----~~-----~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~------------------~~~~~~~vit 350 (813)
|..... .+ .....+.+..+++.+.++|++||+||||+|..... .|+..+++|+
T Consensus 260 G~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~Pa~~~~vit 339 (471)
T 3t41_A 260 GSYIILDKNDHQTFRKDEKVEYDALQKAINYAKKKKSIVVAAAGNDGIDVNDKQKLKLQREYQGNGEVKDVPASMDNVVT 339 (471)
T ss_dssp CEEEEECTTCCCSEESSCHHHHHHHHHHHHHHHHTTCEEEEECCSSCCBTTCHHHHHHTTTCCSSSEEEEETTTSTTEEE
T ss_pred CCCCCCccccccccccccchhHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCcccccccccccccCCceeeccccCCCeEE
Confidence 973210 00 02456788999999999999999999999976432 5677888888
Q ss_pred EeecccCccccceeeecCCcEEEeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEee
Q 044171 351 IAASITDRKYNNTIKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTY 430 (813)
Q Consensus 351 VgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~ 430 (813)
|||++.+
T Consensus 340 VgA~~~~------------------------------------------------------------------------- 346 (471)
T 3t41_A 340 VGSTDQK------------------------------------------------------------------------- 346 (471)
T ss_dssp EEEECTT-------------------------------------------------------------------------
T ss_pred EEeeCCC-------------------------------------------------------------------------
Confidence 8884311
Q ss_pred ccCCCCCchhHHHHHHHHHhcCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceee
Q 044171 431 SFDFENDDATIATVADNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVV 510 (813)
Q Consensus 431 ~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~ 510 (813)
T Consensus 347 -------------------------------------------------------------------------------- 346 (471)
T 3t41_A 347 -------------------------------------------------------------------------------- 346 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeEEEccCeeeeecCCCCeeeecccCCCCcCcccccCCCCCCCceecCCCc----------------------EEecc
Q 044171 511 FHARARILDGRRAIYHGQAPVVASYSSRGPDVNNALLQTADVLKPNIMAPGSS----------------------IWAAW 568 (813)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~----------------------I~Sa~ 568 (813)
+.+++||++||+. |||+|||++ |++++
T Consensus 347 -------------------~~~a~fS~~G~~~------------~di~APG~~i~~~~~~g~~~~~~~~~~~~~~i~s~~ 395 (471)
T 3t41_A 347 -------------------SNLSEFSNFGMNY------------TDIAAPGGSFAYLNQFGVDKWMNEGYMHKENILTTA 395 (471)
T ss_dssp -------------------SSBCTTCCBCTTT------------CCEEEECCCCHHHHHHHHHHHHHTTTHHHHSEEEEC
T ss_pred -------------------CCCCCccCCCCCC------------CeEEecCCCcccccccccccccccccccCceeEecC
Confidence 2478999999963 499999987 89887
Q ss_pred CCCCCCCCCCCCCcceeeeccCChhhHHHHHHHHHHHhCC-CCCHHHHHHHHHccccccCCCCCcccccCCCCCcccccc
Q 044171 569 SPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHP-KWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHV 647 (813)
Q Consensus 569 ~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p-~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~ 647 (813)
+ ++.|..++|||||||||||++|||+|++| .++|++||++|++||++...
T Consensus 396 ~----------~~~~~~~sGTS~AaP~VAG~aAll~~~~p~~~~~~~v~~~L~~tA~~~~~------------------- 446 (471)
T 3t41_A 396 N----------NGRYIYQAGTALATPKVSGALALIIDKYHLEKHPDKAIELLYQHGTSKNN------------------- 446 (471)
T ss_dssp T----------TSSEEEECSHHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHSBCCSC-------------------
T ss_pred C----------CCCEEeecchHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCCCC-------------------
Confidence 4 45899999999999999999999999999 89999999999999987532
Q ss_pred ccCCCCCccCccccCccCcCCC
Q 044171 648 LVHATPFDFGAGFINPARAIDP 669 (813)
Q Consensus 648 ~~~~~~~~~GaG~vd~~~A~~~ 669 (813)
.++..||||++|+.+|++.
T Consensus 447 ---~~~~~~G~G~vd~~~Al~~ 465 (471)
T 3t41_A 447 ---KPFSRYGHGELDVYKALNV 465 (471)
T ss_dssp ---CCHHHHTTCBBCHHHHTTT
T ss_pred ---CCcCccccChhCHHHHHHH
Confidence 2345899999999999985
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-53 Score=494.94 Aligned_cols=338 Identities=24% Similarity=0.330 Sum_probs=252.4
Q ss_pred eeeEEEeccceeEEEEEeCH---HHHHHHHhc--CcCeeEEEeCccceeccC----CCC---------------------
Q 044171 75 YTKLYSYTHLLSGFAIHIES---EEAVSTLQN--AKGVRIIHEDIKMEKLTM----HTP--------------------- 124 (813)
Q Consensus 75 ~~~~~~~~~~~~g~~~~~~~---~~~~~~L~~--~p~V~~v~~~~~~~~~~~----~~~--------------------- 124 (813)
.++.+++. .+++++++++. ++++++|++ +|+|++|||+..+++... ...
T Consensus 53 ~~v~~~~~-~i~~~~~~~~~~~~~~~~~~l~~~~~~~V~~vepd~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (671)
T 1r6v_A 53 GKVVLELP-QIKVVSIKLNGMTVKQAYDKIKALALKGIRYVEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEEL 131 (671)
T ss_dssp CEEEEEEG-GGTEEEEECSSCCHHHHHHHHTTSCCSSEEEEECCBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTT
T ss_pred CeEEEEcC-CCcEEEEEeCCcCHHHHHHHHHhccCCCceEEecCeEEEeccccccCcccccccccccccccccccccccc
Confidence 35566664 57899999864 555577864 899999999987654310 000
Q ss_pred -------cccCCCCCC-CCCCCCCCCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCce
Q 044171 125 -------EFLGIPVGV-WPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKI 196 (813)
Q Consensus 125 -------~~~~~~~~~-w~~~~~~~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki 196 (813)
..++++. + |+. ++|+||+|||||||||++||+|.++...
T Consensus 132 ~~~~W~l~~I~~~~-a~w~~-----~tG~gV~VAVIDTGVd~~HpdL~~~~~~--------------------------- 178 (671)
T 1r6v_A 132 SNELWGLEAIGVTQ-QLWEE-----ASGTNIIVAVVDTGVDGTHPDLEGQVIA--------------------------- 178 (671)
T ss_dssp GGGCHHHHHTTCCH-HHHHH-----CSCTTCEEEEEESCCBTTSGGGTTTBCC---------------------------
T ss_pred cccCCchhccCCch-hhhhc-----cCCCCCEEEEEeCCCCCCCccccccEEe---------------------------
Confidence 0112222 3 544 7899999999999999999999975321
Q ss_pred EEEEEchhhhhhcCCCCCCCCCCCCCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeC------
Q 044171 197 VGAQYFARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYT------ 270 (813)
Q Consensus 197 ~g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~------ 270 (813)
++++..+. ..+ ...+..|.+||||||||||+|..+ + .++.||||+|+|+.+|+++.
T Consensus 179 --g~~~~~~~-----~~p--~~~d~~d~~gHGThVAGiIAa~~n------g---~gv~GVAP~A~I~~vkv~~~~~~~~g 240 (671)
T 1r6v_A 179 --GYRPAFDE-----ELP--AGTDSSYGGSAGTHVAGTIAAKKD------G---KGIVGVAPGAKIMPIVIFDDPALVGG 240 (671)
T ss_dssp --EEEGGGTE-----EEC--TTCBCCTTCSHHHHHHHHHHCCCS------S---SSCCCSCTTSEEEEEESBCCHHHHCT
T ss_pred --cccccCCC-----cCC--CCCCCccCCCcchhhhhhhhccCC------C---CceEEECCCCEEEEEEeccCccccCC
Confidence 11111100 000 012234678999999999999742 1 24689999999999999986
Q ss_pred CC-CCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCC-CCCCCCCCce
Q 044171 271 FG-GYMADVVAAVDQAVEDGVDIISLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSS-SSILSFSPWI 348 (813)
Q Consensus 271 ~g-~~~~~i~~ai~~a~~~g~~VIn~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~~~v 348 (813)
.+ ...+.+++||+||+++|++|||||||+.. +...+..+++.|.++|++||+||||+|... ..+|+..+++
T Consensus 241 ~g~~s~~~i~~ai~~A~~~gadVIN~SlG~~~-------~s~~l~~Ai~~A~~~GvlvVaAAGN~g~~~~~~yPA~~~~V 313 (671)
T 1r6v_A 241 NGYVGDDYVAAGIIWATDHGAKVMNHSWGGWG-------YSYTMKEAFDYAMEHGVVMVVSAGNNTSDSHHQYPAGYPGV 313 (671)
T ss_dssp TSBCCHHHHHHHHHHHHHTTCSEEEECEEBSC-------CCHHHHHHHHHHHHTTCEEEEECCSCSSSCCCCBTTTSTTC
T ss_pred CCccCHHHHHHHHHHHHHcCCCEEEeCCCCCC-------CCHHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCcccCCCe
Confidence 12 33456899999999999999999999743 235788889999999999999999999865 5678889999
Q ss_pred EEEeecccCccccceeeecCCcEEEeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEE
Q 044171 349 TSIAASITDRKYNNTIKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIIC 428 (813)
Q Consensus 349 itVgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~ 428 (813)
|+|||++.+..
T Consensus 314 ItVgA~d~~g~--------------------------------------------------------------------- 324 (671)
T 1r6v_A 314 IQVAALDYYGG--------------------------------------------------------------------- 324 (671)
T ss_dssp EEEEEEEEETT---------------------------------------------------------------------
T ss_pred EEEEEEcCCCC---------------------------------------------------------------------
Confidence 99999542100
Q ss_pred eeccCCCCCchhHHHHHHHHHhcCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCce
Q 044171 429 TYSFDFENDDATIATVADNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQA 508 (813)
Q Consensus 429 ~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~ 508 (813)
T Consensus 325 -------------------------------------------------------------------------------- 324 (671)
T 1r6v_A 325 -------------------------------------------------------------------------------- 324 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeeeEEEccCeeeeecCCCCeeeecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCC--------CCCCC
Q 044171 509 VVFHARARILDGRRAIYHGQAPVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGD--------PNLKG 580 (813)
Q Consensus 509 v~~~~~~~~~~~~~~~~~~~~~~~s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~--------~~~~~ 580 (813)
...++.||++||.. ||+|||++|+|+++...... ....+
T Consensus 325 --------------------~~~~a~fSn~G~~v-------------dv~APG~~I~St~p~~~~~g~~~~~~~~~~~~~ 371 (671)
T 1r6v_A 325 --------------------TFRVAGFSSRSDGV-------------SVGAPGVTILSTVPGEDSIGYEGHNENVPATNG 371 (671)
T ss_dssp --------------------EEEECSSSCCCTTE-------------EEEEECSSEEEECCCTTSTTCCCCCTTCCCSSS
T ss_pred --------------------ceeeccccCCCCCe-------------eEEecCCCEEeecCCCCccccccccccccccCC
Confidence 01378999999976 99999999999987532110 01124
Q ss_pred CcceeeeccCChhhHHHHHHHHHHHhCCCCCHHHHHHHHHccccccCCCCCcccccCCCCCccccccccCCCCCccCccc
Q 044171 581 RNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGF 660 (813)
Q Consensus 581 ~~y~~~sGTSMAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaG~ 660 (813)
+.|..++|||||||||||++|||+|++|++++.+||++|++||+++...+ .+..||||+
T Consensus 372 ~~y~~~sGTSmAAP~VAGvaALl~s~~P~lt~~~Vr~~L~~TA~~~~~~g---------------------~d~~~G~G~ 430 (671)
T 1r6v_A 372 GTYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNG---------------------WDHDTGYGL 430 (671)
T ss_dssp CCEEEEESHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSSSS---------------------CBTTTBTCB
T ss_pred CceEEecCccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcCCCCCC---------------------CCCCcccce
Confidence 58999999999999999999999999999999999999999999875332 234799999
Q ss_pred cCccCcCCCCeeee
Q 044171 661 INPARAIDPGLIFN 674 (813)
Q Consensus 661 vd~~~A~~~~lv~~ 674 (813)
+|+.+|++..+..+
T Consensus 431 vna~~Al~~~l~~~ 444 (671)
T 1r6v_A 431 VKLDAALQGPLPTQ 444 (671)
T ss_dssp CCHHHHHHCCCCSS
T ss_pred eCHHHHhhhhcCCC
Confidence 99999998766544
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-55 Score=506.43 Aligned_cols=344 Identities=20% Similarity=0.241 Sum_probs=40.2
Q ss_pred ceeeEEEeccceeEEEEEeCHHHHHHHHhcCcCeeEEEeCccceecc-CCCCcccCCCC---CCCCCCCCCCCCCCCcEE
Q 044171 74 SYTKLYSYTHLLSGFAIHIESEEAVSTLQNAKGVRIIHEDIKMEKLT-MHTPEFLGIPV---GVWPTLGGAEFSGEGVVI 149 (813)
Q Consensus 74 ~~~~~~~~~~~~~g~~~~~~~~~~~~~L~~~p~V~~v~~~~~~~~~~-~~~~~~~~~~~---~~w~~~~~~~~~G~gv~V 149 (813)
..++.+.|+.+|+||+++++.+++ ++|+++|+|++||++..++.+. .+....+..+. ..|.. +.+|+||+|
T Consensus 108 ~~~v~~~y~~~~~Gfsv~l~~~~l-~~L~~~P~V~~Vepd~~v~~~~~pWgL~~i~~~~~~~~~w~~----~~~G~GV~V 182 (692)
T 2p4e_P 108 LTKILHVFHGLLPGFLVKMSGDLL-ELALKLPHVDYIEEDSSVFAQSIPWNLERITPPRYRADEYQP----PDGGSLVEV 182 (692)
T ss_dssp CCEEEEEECSSSCEEEEECCGGGH-HHHHTSTTEEEEEEEEEEEEC----------------------------------
T ss_pred ccceeeEeeccccEEEEEeCHHHH-HHHHcCCCceEEEeccccccCCCCcchhhccccccccccccc----CCCCCCcEE
Confidence 357789999999999999999988 9999999999999999876531 11111122111 13443 689999999
Q ss_pred EEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCCCCCCCCCCCCCCCCCcc
Q 044171 150 GFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYASPFDADGHGS 229 (813)
Q Consensus 150 aVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT 229 (813)
||||||||++||+|.++.. |.+ +++..+ .+.......+.|.+||||
T Consensus 183 aVIDTGId~~HpdL~gr~~--------~~~--------------------~~~~~d------~dg~~~~~~~~D~~GHGT 228 (692)
T 2p4e_P 183 YLLDTSIQSDHREIEGRVM--------VTD--------------------FENVPE------EDGTRFHRQASKCDSHGT 228 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEcCCCCCCChhhcCceE--------ecc--------------------cccccC------CCCCcccCCCCCCCCcHH
Confidence 9999999999999997531 100 000000 000000134568899999
Q ss_pred ccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-CCHHHHHHHHHHHHhC------CCcEEEEccCCCCC
Q 044171 230 HTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-GYMADVVAAVDQAVED------GVDIISLSVGPSAV 302 (813)
Q Consensus 230 hVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~------g~~VIn~S~G~~~~ 302 (813)
||||||+|+. .||||+|+|+.+|++++.| ++.+++++||+|++++ +++|||||||+.
T Consensus 229 HVAGiIAg~~--------------~GVAP~A~L~~vKVl~~~G~g~~s~ii~aI~~a~~~~~~~~~g~~VINmSlGg~-- 292 (692)
T 2p4e_P 229 HLAGVVSGRD--------------AGVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGG-- 292 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhhhHhhcCC--------------CccCCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhhhhcccCCceEEEecCCCC--
Confidence 9999999872 5999999999999999877 7888999999999986 899999999963
Q ss_pred CCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCC-CCCCCCCceEEEeecccCccccceeeecCCcEEEeeecCCCC
Q 044171 303 PSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSS-SILSFSPWITSIAASITDRKYNNTIKLANGHSFSGIGLAPPT 381 (813)
Q Consensus 303 ~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (813)
+.+.++.+++++.++|++||+||||+|.+.. ..|+..+++|+|||++.+...
T Consensus 293 ------~s~~l~~Ai~~A~~~GVlvVaAAGN~G~~~~~~sPA~~~~vItVGA~d~~~~~--------------------- 345 (692)
T 2p4e_P 293 ------YSRVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQDQP--------------------- 345 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------CcHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCcccCCCEEEEEEEcCCCCc---------------------
Confidence 2356788888999999999999999997653 347888999999996422100
Q ss_pred CCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEEEEeC
Q 044171 382 LGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMD 461 (813)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~ 461 (813)
T Consensus 346 -------------------------------------------------------------------------------- 345 (692)
T 2p4e_P 346 -------------------------------------------------------------------------------- 345 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeeeeecCCCCeeeecccCCCC
Q 044171 462 PDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPVVASYSSRGPD 541 (813)
Q Consensus 462 ~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~s~FSS~Gp~ 541 (813)
...-+.||+|||.
T Consensus 346 -------------------------------------------------------------------a~~ss~fSn~G~~ 358 (692)
T 2p4e_P 346 -------------------------------------------------------------------VTLGTLGTNFGRC 358 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------------------------------------------------------------cccccccCCCCCc
Confidence 0001238889875
Q ss_pred cCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHHHHHHHhCCCCCHHHHHHHHHc
Q 044171 542 VNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAITSAMMT 621 (813)
Q Consensus 542 ~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~s~~~ik~~L~~ 621 (813)
+ ||+|||++|+|+++.. ++.|..++|||||||||||++|||+|++|+|+|++||++|++
T Consensus 359 v-------------DI~APG~~I~St~~~~--------~~~y~~~SGTSmAAPhVAG~aALlls~~P~ltp~qVk~~L~~ 417 (692)
T 2p4e_P 359 V-------------DLFAPGEDIIGASSDC--------STCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQRLIH 417 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred e-------------eEEecCCcEEeeccCC--------CCceEeccchHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 4 9999999999998642 247999999999999999999999999999999999999999
Q ss_pred cccccCCCCCcccccCCCCCccccccccCCCCCccCccc--cCccCcCC
Q 044171 622 SAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGF--INPARAID 668 (813)
Q Consensus 622 TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaG~--vd~~~A~~ 668 (813)
||.+....+.++........|+.- ...+.....+|+|+ .+++.+..
T Consensus 418 tA~~~~~~~~~~p~~~~~~tpN~l-~~~~~~~~~~G~~l~~~~~w~~~s 465 (692)
T 2p4e_P 418 FSAKDVINEAWFPEDQRVLTPNLV-AALPPSTHGAGWQLFCRTVWSAHS 465 (692)
T ss_dssp -------------------------------------------------
T ss_pred hccccccCCCCCccccCCCCccee-ecCCCccccCCCCccccccccccC
Confidence 997643221111000000011100 01111345688998 88887764
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-52 Score=471.14 Aligned_cols=390 Identities=23% Similarity=0.332 Sum_probs=272.2
Q ss_pred ccCCCCCCCCCCCCCCCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhh
Q 044171 126 FLGIPVGVWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARA 205 (813)
Q Consensus 126 ~~~~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~ 205 (813)
.++.+. +|+. +|+||+|||||||||++||+|.++.. .++++..
T Consensus 10 ~i~~~~-~w~~------~g~gv~VaViDtGvd~~Hp~l~~~~~-----------------------------~~~~~~~- 52 (441)
T 1y9z_A 10 FVGATV-LSDS------QAGNRTICIIDSGYDRSHNDLNANNV-----------------------------TGTNNSG- 52 (441)
T ss_dssp HTTCSS-SCCT------TGGGCEEEEEESCCCTTSTTTTTSEE-----------------------------EECCCTT-
T ss_pred hcChhh-hhhc------CCCCcEEEEEcCCCCCCChhHhcCcc-----------------------------cCcccCC-
Confidence 455544 7865 47799999999999999999986421 1111111
Q ss_pred hhhcCCCCCCCCCCCCCCCCCCccccccccccCCCccceecccccccccccccCc--cEEEEEEeeCCC-CCHHHHHHHH
Q 044171 206 AIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGA--RIAVYKALYTFG-GYMADVVAAV 282 (813)
Q Consensus 206 ~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A--~l~~~kv~~~~g-~~~~~i~~ai 282 (813)
..++..+.|++||||||||||+|..+. .++.||||+| +|+.+|+++..+ +..+++++||
T Consensus 53 ---------~~~~~~~~d~~gHGT~vAgiia~~~~~---------~g~~GvAP~a~~~l~~~kv~~~~g~~~~~~~~~ai 114 (441)
T 1y9z_A 53 ---------TGNWYQPGNNNAHGTHVAGTIAAIANN---------EGVVGVMPNQNANIHIVKVFNEAGWGYSSSLVAAI 114 (441)
T ss_dssp ---------SCCTTCCCSSCCHHHHHHHHHHCCCSS---------SBCCCSSCSSCSEEEEEECEETTEECCSSCHHHHH
T ss_pred ---------CCCCCCCCCCCCcHHHHHHHHhcccCC---------CCceEecCCCCCEEEEEEEeCCCCCcCHHHHHHHH
Confidence 011234568899999999999997531 2368999995 899999999877 7888999999
Q ss_pred HHHHhC-CCcEEEEccCCCCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCCCCCCCceEEEeecccCcccc
Q 044171 283 DQAVED-GVDIISLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSSSILSFSPWITSIAASITDRKYN 361 (813)
Q Consensus 283 ~~a~~~-g~~VIn~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~vitVgA~~~~~~~~ 361 (813)
+||+++ |++|||||||.... ...+..++++|.++|++||+||||+|.....+|+..+++|+|||++.+....
T Consensus 115 ~~a~~~~g~~Vin~S~G~~~~-------~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~VgA~~~~~~~~ 187 (441)
T 1y9z_A 115 DTCVNSGGANVVTMSLGGSGS-------TTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHA 187 (441)
T ss_dssp HHHHHTTCCSEEEECCCBSCC-------BHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBC
T ss_pred HHHHHhcCCcEEEeCCCCCCC-------CHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCCeEEEEEECCCCCCC
Confidence 999999 99999999997542 2456778889999999999999999988788899999999999999876554
Q ss_pred ceeeecCCcEEEeee--c-CCCCCCCce----------------ee--------eEEecccccCcccccccccccCCCC-
Q 044171 362 NTIKLANGHSFSGIG--L-APPTLGRVY----------------YP--------LAAAADVCHRNVSTGIFSLESCQYP- 413 (813)
Q Consensus 362 ~~~~~~~~~~~~~~~--~-~~~~~~~~~----------------~~--------~~~~~~~~~~~~~~~~~~~~~c~~~- 413 (813)
.+...+....+.... + .....++.. +| +.+..+...... ......|...
T Consensus 188 ~~S~~g~~vdv~ApG~~i~s~~~~g~g~~~~~~~~G~s~~~~~~~p~~~~~~~~~~~~~~~~~g~~---~~~~~~C~~~~ 264 (441)
T 1y9z_A 188 AFSQYTDQVEISGPGEAILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASA---TGALAECTVNG 264 (441)
T ss_dssp TTSCCCTTEEEEEECSSEEEECSTTCEEEEEEEETTEECGGGCCEECEEEEEETTEEEECCCCCEE---EEEEEEEEEET
T ss_pred ccccCCCceEEEeccCCeeccccCCCcccceeecccccccccccCcccccccCCcccccccccccc---ccchhcccccc
Confidence 443333222221110 0 000000000 00 111111110000 0112346532
Q ss_pred CCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEEEEeCCCCCCCCC----c-cccccCCcceEEEcccch
Q 044171 414 ELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPDQDFSPN----K-FKDMALDVPGIILNNMQS 488 (813)
Q Consensus 414 ~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~----~-~~~~~~~ip~~~i~~~~~ 488 (813)
..+...+++|||++|.|+... ...+.+.+|..+++++|+.++|++++... .+. . .......+|.+.+ +..+
T Consensus 265 ~~~~~~~~~gkivl~~rg~~~-~~~~~~~~~~~~~~~aGa~gvii~~~~~~--~g~~~~~~~~~~~~~~~p~~~v-~~~~ 340 (441)
T 1y9z_A 265 TSFSCGNMANKICLVERVGNQ-GSSYPEINSTKACKTAGAKGIIVYSNSAL--PGLQNPFLVDANSDITVPSVSV-DRAT 340 (441)
T ss_dssp TEEECCCCTTEEEEEECCSCS-SSSCTHHHHHHHHHHTTCSEEEEECCTTS--CSCCCCEEECTTCCCCSCEEEE-CHHH
T ss_pred ccccCCCccccEEEEeccccC-cccccHHHHHHHHHhcCCeEEEEEeCCCc--cccccccccccccCccccEEEE-eHHH
Confidence 356677899999999985321 12246678999999999999999998652 221 1 1123456888776 5567
Q ss_pred hHHHHHHHhhcCccCCCCceeeeeeeEEEccCeeeeecCCCCeeeecccCCCCcCcccccCCCCCCCceecCCCcEEecc
Q 044171 489 SMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAW 568 (813)
Q Consensus 489 g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~ 568 (813)
++.|+.|+.+. . .+ ++.
T Consensus 341 g~~l~~~~~~~------------------------------------------~-------------t~--------~~~ 357 (441)
T 1y9z_A 341 GLALKAKLGQS------------------------------------------T-------------TV--------SNQ 357 (441)
T ss_dssp HHHHHTTTTSE------------------------------------------E-------------EE--------EEE
T ss_pred HHHHHHHhcCC------------------------------------------c-------------cc--------ccc
Confidence 77777654211 0 00 111
Q ss_pred CCCCCCCCCCCCCcceeeeccCChhhHHHHHHHHHHHhCCCCCHHHHHHHHHccccccCCCCCcccccCCCCCccccccc
Q 044171 569 SPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVL 648 (813)
Q Consensus 569 ~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (813)
.++.|..+||||||||||||++|||+|+||+|+|++||++||+||++++..+.
T Consensus 358 ----------~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~~~~~~g~----------------- 410 (441)
T 1y9z_A 358 ----------GNQDYEYYNGTSMATPHVSGVATLVWSYHPECSASQVRAALNATADDLSVAGR----------------- 410 (441)
T ss_dssp ----------EEESEEEECSHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHSBCCSSSSC-----------------
T ss_pred ----------cCCCceeecccccCCcccchHHHHHHHHCCCCCHHHHHHHHHhhchhhccCCC-----------------
Confidence 13489999999999999999999999999999999999999999998754332
Q ss_pred cCCCCCccCccccCccCcCCCCeeeecchhhHHHhhccCCC
Q 044171 649 VHATPFDFGAGFINPARAIDPGLIFNAHFQEYVQFLCAVPG 689 (813)
Q Consensus 649 ~~~~~~~~GaG~vd~~~A~~~~lv~~~~~~~~~~~~~~~~~ 689 (813)
+++||+|+||+.+|+ +|+.|||+.+.
T Consensus 411 ----~~~~G~G~vn~~~A~-----------~~~~~lc~~~~ 436 (441)
T 1y9z_A 411 ----DNQTGYGMINAVAAK-----------AYLDESCTGPT 436 (441)
T ss_dssp ----BTTTBTCBCCHHHHH-----------HHHHHCTTCC-
T ss_pred ----cccccccccCHHHHH-----------HHHHhhhcCCC
Confidence 347999999999995 68999999874
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-51 Score=435.57 Aligned_cols=266 Identities=31% Similarity=0.446 Sum_probs=213.0
Q ss_pred CCCcccCCCCCCCCCCCCCCCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEE
Q 044171 122 HTPEFLGIPVGVWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQY 201 (813)
Q Consensus 122 ~~~~~~~~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~ 201 (813)
+..+.++++. +|+. +..|+||+|||||||||++||+|.++ ++.+++
T Consensus 13 w~l~~i~~~~-aw~~----~~g~~gv~VaViDtGvd~~hp~l~~~-----------------------------~~~~~~ 58 (280)
T 1dbi_A 13 YGPQNTYTDY-AWDV----TKGSSGQEIAVIDTGVDYTHPDLDGK-----------------------------VIKGYD 58 (280)
T ss_dssp CTTGGGTHHH-HTTT----CCCCTTCEEEEEESCCCTTSTTTTTT-----------------------------EEEEEE
T ss_pred CChhhcCcHH-HHhh----cCCCCCCEEEEEeCCcCCCChhhccC-----------------------------ccccee
Confidence 3344455444 7876 45667999999999999999999863 455666
Q ss_pred chhhhhhcCCCCCCCCCCCCCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-CCHHHHHH
Q 044171 202 FARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-GYMADVVA 280 (813)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-~~~~~i~~ 280 (813)
|.+. ...+.|.+||||||||||+|..++. .++.||||+|+|+.+|+++..+ +..+++++
T Consensus 59 ~~~~------------~~~~~d~~gHGT~vAgiia~~~~~~--------~g~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ 118 (280)
T 1dbi_A 59 FVDN------------DYDPMDLNNHGTHVAGIAAAETNNA--------TGIAGMAPNTRILAVRALDRNGSGTLSDIAD 118 (280)
T ss_dssp TTTT------------BSCCCCSSSHHHHHHHHHHCCCSSS--------SSCCCSSSSCEEEEEECCCTTSCCCHHHHHH
T ss_pred ccCC------------CCCCCCCCCcHHHHHHHHhCcCCCC--------CcceEeCCCCEEEEEEEECCCCCcCHHHHHH
Confidence 6543 1345688999999999999975321 2468999999999999998876 78899999
Q ss_pred HHHHHHhCCCcEEEEccCCCCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCCCCCCCceEEEeecccCccc
Q 044171 281 AVDQAVEDGVDIISLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSSSILSFSPWITSIAASITDRKY 360 (813)
Q Consensus 281 ai~~a~~~g~~VIn~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~vitVgA~~~~~~~ 360 (813)
||+||+++|++|||||||.... ...++.+++++.++|++||+||||+|.....+|+..+++|+|||++.+
T Consensus 119 ai~~a~~~g~~Vin~S~G~~~~-------~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~~--- 188 (280)
T 1dbi_A 119 AIIYAADSGAEVINLSLGCDCH-------TTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQY--- 188 (280)
T ss_dssp HHHHHHHTTCSEEEECCSSCCC-------CHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEECTT---
T ss_pred HHHHHHHCCCCEEEeCCCCCCC-------CHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCCeEEEEeeCCC---
Confidence 9999999999999999997532 256788888999999999999999998777788889999999985311
Q ss_pred cceeeecCCcEEEeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchh
Q 044171 361 NNTIKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDAT 440 (813)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~ 440 (813)
T Consensus 189 -------------------------------------------------------------------------------- 188 (280)
T 1dbi_A 189 -------------------------------------------------------------------------------- 188 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhcCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccC
Q 044171 441 IATVADNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDG 520 (813)
Q Consensus 441 ~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 520 (813)
T Consensus 189 -------------------------------------------------------------------------------- 188 (280)
T 1dbi_A 189 -------------------------------------------------------------------------------- 188 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeecCCCCeeeecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHH
Q 044171 521 RRAIYHGQAPVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVA 600 (813)
Q Consensus 521 ~~~~~~~~~~~~s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~a 600 (813)
+.++.||++||.. ||+|||++|+++++ ++.|..++|||||||||||++
T Consensus 189 ---------~~~~~~S~~G~~~-------------dv~ApG~~i~s~~~----------~~~~~~~sGTS~AaP~vaG~a 236 (280)
T 1dbi_A 189 ---------DRLASFSNYGTWV-------------DVVAPGVDIVSTIT----------GNRYAYMSGTSMASPHVAGLA 236 (280)
T ss_dssp ---------SCBCTTBCCSTTC-------------CEEEECSSEEEEET----------TTEEEEECSHHHHHHHHHHHH
T ss_pred ---------CCcCCCCCCCCCc-------------eEEEecCCeEeecC----------CCCEEEccCHHHHHHHHHHHH
Confidence 1368899999865 99999999999984 458999999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHccccccCCCCCcccccCCCCCccccccccCCCCCccCccccCccCcCC
Q 044171 601 ALIKQRHPKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGFINPARAID 668 (813)
Q Consensus 601 ALl~q~~p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaG~vd~~~A~~ 668 (813)
|||++ |.+++.+||++|++||+++... ...||+|+||+.+|++
T Consensus 237 All~~--p~~t~~~v~~~L~~ta~~~~~~-----------------------~~~~G~G~vn~~~A~~ 279 (280)
T 1dbi_A 237 ALLAS--QGRNNIEIRQAIEQTADKISGT-----------------------GTYFKYGRINSYNAVT 279 (280)
T ss_dssp HHHHH--TTCCHHHHHHHHHHTSBCCTTB-----------------------TTTBSSEECCHHHHHT
T ss_pred HHHHC--CCCCHHHHHHHHHHhCccCCCC-----------------------CCcccCCEECHHHHhc
Confidence 99987 8999999999999999986422 1379999999999975
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-51 Score=433.87 Aligned_cols=262 Identities=32% Similarity=0.512 Sum_probs=219.5
Q ss_pred cccCCCCCCCCCCCCCCCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchh
Q 044171 125 EFLGIPVGVWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFAR 204 (813)
Q Consensus 125 ~~~~~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~ 204 (813)
+.++++. +|+. .+|+||+|||||||||++||+|.++ ++.+++|.+
T Consensus 16 ~~i~~~~-aw~~-----~~G~gv~VaViDtGvd~~h~~l~~~-----------------------------~~~~~~~~~ 60 (279)
T 1thm_A 16 QKIQAPQ-AWDI-----AEGSGAKIAIVDTGVQSNHPDLAGK-----------------------------VVGGWDFVD 60 (279)
T ss_dssp HHTTHHH-HHTT-----CCCTTCEEEEEESCCCTTCTTTTTT-----------------------------EEEEEETTT
T ss_pred hhCChHH-HHhc-----CCCCCCEEEEEccCCCCCCcchhcC-----------------------------ccccccccC
Confidence 3345444 7876 4799999999999999999999863 555666654
Q ss_pred hhhhcCCCCCCCCCCCCCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-CCHHHHHHHHH
Q 044171 205 AAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-GYMADVVAAVD 283 (813)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-~~~~~i~~ai~ 283 (813)
+ ...+.|.+||||||||||+|...++ .++.||||+|+|+.+|+++..+ +..+++++||+
T Consensus 61 ~------------~~~~~d~~gHGT~vAgiia~~~~n~--------~g~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~ 120 (279)
T 1thm_A 61 N------------DSTPQNGNGHGTHCAGIAAAVTNNS--------TGIAGTAPKASILAVRVLDNSGSGTWTAVANGIT 120 (279)
T ss_dssp T------------BSCCCCSSSHHHHHHHHHHCCCSSS--------SSCCCSSTTCEEEEEECSCTTSCCCHHHHHHHHH
T ss_pred C------------CCCCCCCCCcHHHHHHHHhCccCCC--------CccEEeCCCCEEEEEEeeCCCCCccHHHHHHHHH
Confidence 3 1345688999999999999975322 2368999999999999998876 78889999999
Q ss_pred HHHhCCCcEEEEccCCCCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCCCCCCCceEEEeecccCccccce
Q 044171 284 QAVEDGVDIISLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSSSILSFSPWITSIAASITDRKYNNT 363 (813)
Q Consensus 284 ~a~~~g~~VIn~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~vitVgA~~~~~~~~~~ 363 (813)
||+++|++|||||||.... .+.++.+++++.++|+++|+||||+|.....+|+..+++|+|||++.+
T Consensus 121 ~a~~~g~~Vin~S~G~~~~-------~~~l~~ai~~a~~~gvlvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~~------ 187 (279)
T 1thm_A 121 YAADQGAKVISLSLGGTVG-------NSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQN------ 187 (279)
T ss_dssp HHHHTTCSEEEECCCBSSC-------CHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEECTT------
T ss_pred HHHHCCCCEEEEecCCCCC-------CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCCCeEEEEEeCCC------
Confidence 9999999999999997542 256788888999999999999999998877888999999999985311
Q ss_pred eeecCCcEEEeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHH
Q 044171 364 IKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIAT 443 (813)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~ 443 (813)
T Consensus 188 -------------------------------------------------------------------------------- 187 (279)
T 1thm_A 188 -------------------------------------------------------------------------------- 187 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeee
Q 044171 444 VADNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRA 523 (813)
Q Consensus 444 ~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 523 (813)
T Consensus 188 -------------------------------------------------------------------------------- 187 (279)
T 1thm_A 188 -------------------------------------------------------------------------------- 187 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecCCCCeeeecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHHHHH
Q 044171 524 IYHGQAPVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALI 603 (813)
Q Consensus 524 ~~~~~~~~~s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl 603 (813)
+.++.||++||.. ||+|||++|+++++ ++.|..++|||||||||||++|||
T Consensus 188 ------~~~~~fS~~G~~~-------------dv~APG~~i~s~~~----------~~~~~~~sGTS~AaP~VaG~aAll 238 (279)
T 1thm_A 188 ------DNKSSFSTYGSWV-------------DVAAPGSSIYSTYP----------TSTYASLSGTSMATPHVAGVAGLL 238 (279)
T ss_dssp ------SCBCTTCCCCTTC-------------CEEEECSSEEEEET----------TTEEEEECSHHHHHHHHHHHHHHH
T ss_pred ------CCcCCcCCCCCce-------------EEEEcCCCeEEEeC----------CCCEEEcccHHHHHHHHHHHHHHH
Confidence 1367899999865 99999999999984 358999999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHHccccccCCCCCcccccCCCCCccccccccCCCCCccCccccCccCcCC
Q 044171 604 KQRHPKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGFINPARAID 668 (813)
Q Consensus 604 ~q~~p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaG~vd~~~A~~ 668 (813)
++|.+++++||++|++||+++...+ ..||+|+||+.+|++
T Consensus 239 --~~p~~t~~~v~~~L~~ta~~~~~~~-----------------------~~~G~G~vn~~~A~~ 278 (279)
T 1thm_A 239 --ASQGRSASNIRAAIENTADKISGTG-----------------------TYWAKGRVNAYKAVQ 278 (279)
T ss_dssp --HTTTCCHHHHHHHHHHTCBCCTTBT-----------------------TTBSSEECCHHHHHH
T ss_pred --HCCCcCHHHHHHHHHHhCccCCCCC-----------------------ccccCCeeCHHHHhc
Confidence 5799999999999999999875322 369999999999974
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-50 Score=425.06 Aligned_cols=253 Identities=34% Similarity=0.518 Sum_probs=213.7
Q ss_pred CCCCCCCCCCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCC
Q 044171 133 VWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDF 212 (813)
Q Consensus 133 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~ 212 (813)
+|.. +++|+||+|||||||| .+||+|+. ..+++|..+
T Consensus 16 a~~~----g~~G~gv~VaViDtGi-~~h~~l~~-------------------------------~~~~~~~~~------- 52 (269)
T 1gci_A 16 AHNR----GLTGSGVKVAVLDTGI-STHPDLNI-------------------------------RGGASFVPG------- 52 (269)
T ss_dssp HHHT----TCSCTTCEEEEEESCC-CCCTTCCE-------------------------------EEEEECSTT-------
T ss_pred HHhc----CCCCCCCEEEEECCCC-CCCHhhcc-------------------------------cCCcccCCC-------
Confidence 6665 7899999999999999 89999942 233444322
Q ss_pred CCCCCCCCCCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-CCHHHHHHHHHHHHhCCCc
Q 044171 213 NSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-GYMADVVAAVDQAVEDGVD 291 (813)
Q Consensus 213 ~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~~ 291 (813)
...+.|.+||||||||||+|..+. ..+.||||+|+|+.+|+++..+ +..+++++||+|+++++++
T Consensus 53 -----~~~~~d~~gHGT~vAgiia~~~~~---------~~~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~~~~~~ 118 (269)
T 1gci_A 53 -----EPSTQDGNGHGTHVAGTIAALNNS---------IGVLGVAPSAELYAVKVLGASGSGSVSSIAQGLEWAGNNGMH 118 (269)
T ss_dssp -----CCSCSCSSSHHHHHHHHHHCCCSS---------SBCCCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHTTCS
T ss_pred -----CCCCCCCCCChHHHHHHHhcCcCC---------CCcEEeCCCCEEEEEEeECCCCCcCHHHHHHHHHHHHHCCCe
Confidence 123567899999999999997321 2368999999999999998876 7788999999999999999
Q ss_pred EEEEccCCCCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCCCCCCCceEEEeecccCccccceeeecCCcE
Q 044171 292 IISLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSSSILSFSPWITSIAASITDRKYNNTIKLANGHS 371 (813)
Q Consensus 292 VIn~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~ 371 (813)
|||||||.... ...++.+++++.++|++||+||||+|.....+|+..+++|+|||++.+
T Consensus 119 Vin~S~G~~~~-------~~~~~~ai~~a~~~gv~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~-------------- 177 (269)
T 1gci_A 119 VANLSLGSPSP-------SATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQN-------------- 177 (269)
T ss_dssp EEEECCCBSSC-------CHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECTT--------------
T ss_pred EEEeCCCCCCC-------CHHHHHHHHHHHHCCCEEEEecCCCCCCCCcCCccCCCeEEEEeecCC--------------
Confidence 99999997542 256788888999999999999999998878888999999999985311
Q ss_pred EEeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhc
Q 044171 372 FSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKI 451 (813)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~ 451 (813)
T Consensus 178 -------------------------------------------------------------------------------- 177 (269)
T 1gci_A 178 -------------------------------------------------------------------------------- 177 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeeeeecCCCCe
Q 044171 452 EAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPV 531 (813)
Q Consensus 452 Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 531 (813)
+.
T Consensus 178 ------------------------------------------------------------------------------~~ 179 (269)
T 1gci_A 178 ------------------------------------------------------------------------------NN 179 (269)
T ss_dssp ------------------------------------------------------------------------------SC
T ss_pred ------------------------------------------------------------------------------CC
Confidence 13
Q ss_pred eeecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHHHHHHHhCCCCC
Q 044171 532 VASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWS 611 (813)
Q Consensus 532 ~s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~s 611 (813)
++.||++||.+ ||+|||++|+++++ ++.|..++|||||||||||++|||+|++|+|+
T Consensus 180 ~~~~S~~G~~~-------------di~APG~~i~s~~~----------~~~~~~~sGTS~AaP~vaG~aAll~~~~p~~t 236 (269)
T 1gci_A 180 RASFSQYGAGL-------------DIVAPGVNVQSTYP----------GSTYASLNGTSMATPHVAGAAALVKQKNPSWS 236 (269)
T ss_dssp BCTTCCCSTTE-------------EEEEECSSEEEEET----------TTEEEEECSHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred CCCCCCCCCCc-------------ceEecCCCeEeecC----------CCCEEEcCcHHHHHHHHHHHHHHHHHhCCCCC
Confidence 67899999876 99999999999984 45899999999999999999999999999999
Q ss_pred HHHHHHHHHccccccCCCCCcccccCCCCCccccccccCCCCCccCccccCccCcCC
Q 044171 612 PAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGFINPARAID 668 (813)
Q Consensus 612 ~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaG~vd~~~A~~ 668 (813)
+.+||++|++||+++. +++.||||++|+.+|++
T Consensus 237 ~~~v~~~L~~tA~~~g------------------------~~~~~G~G~vn~~~A~~ 269 (269)
T 1gci_A 237 NVQIRNHLKNTATSLG------------------------STNLYGSGLVNAEAATR 269 (269)
T ss_dssp HHHHHHHHHHTSBCCS------------------------CHHHHTTCBCCHHHHTC
T ss_pred HHHHHHHHHHhCccCC------------------------CCCCcccCccCHHHHcC
Confidence 9999999999998763 12379999999999985
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-50 Score=427.71 Aligned_cols=254 Identities=33% Similarity=0.536 Sum_probs=212.0
Q ss_pred CCCCCCCCCCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCC
Q 044171 133 VWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDF 212 (813)
Q Consensus 133 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~ 212 (813)
+|.. +++|+||+|||||||||++||+|+. ..+++|..+
T Consensus 16 ~~~~----g~~G~gv~VaViDtGid~~h~~l~~-------------------------------~~g~~~~~~------- 53 (274)
T 1r0r_E 16 VQAQ----GFKGANVKVAVLDTGIQASHPDLNV-------------------------------VGGASFVAG------- 53 (274)
T ss_dssp HHHH----TCSCTTCEEEEEESCCCTTCTTCCE-------------------------------EEEEECSTT-------
T ss_pred HHhc----CCCCCCCEEEEEcCCCCCCCHhHcC-------------------------------CCCccccCC-------
Confidence 5665 7899999999999999999999941 223444322
Q ss_pred CCCCCCCCCCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-CCHHHHHHHHHHHHhCCCc
Q 044171 213 NSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-GYMADVVAAVDQAVEDGVD 291 (813)
Q Consensus 213 ~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~~ 291 (813)
...+.|.+||||||||||+|..+. ..+.||||+|+|+.+|+++..+ +..+++++||+||++++++
T Consensus 54 -----~~~~~d~~gHGT~vAgiia~~~~~---------~g~~GvAp~a~l~~~~v~~~~g~~~~~~i~~ai~~a~~~~~~ 119 (274)
T 1r0r_E 54 -----EAYNTDGNGHGTHVAGTVAALDNT---------TGVLGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMD 119 (274)
T ss_dssp -----CCTTCCSSSHHHHHHHHHHCCSSS---------SBCCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTCS
T ss_pred -----CCCCCCCCCCHHHHHHHHHccCCC---------CceEEECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCC
Confidence 122457899999999999997421 2368999999999999998877 7788999999999999999
Q ss_pred EEEEccCCCCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCC----CCCCCCCCceEEEeecccCccccceeeec
Q 044171 292 IISLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSS----SSILSFSPWITSIAASITDRKYNNTIKLA 367 (813)
Q Consensus 292 VIn~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~----~~~~~~~~~vitVgA~~~~~~~~~~~~~~ 367 (813)
|||||||.... .+.+..+++++.++|++||+||||+|... ..+|+..+++|+|||++.+
T Consensus 120 Vin~S~G~~~~-------~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~~~---------- 182 (274)
T 1r0r_E 120 VINMSLGGASG-------STAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDSN---------- 182 (274)
T ss_dssp EEEECEEBSSC-------CHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEECTT----------
T ss_pred EEEeCCCCCCC-------cHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCccccCCCCCCcEEEEEEecCC----------
Confidence 99999997542 25678888899999999999999999763 4567788999999985311
Q ss_pred CCcEEEeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHH
Q 044171 368 NGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADN 447 (813)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~ 447 (813)
T Consensus 183 -------------------------------------------------------------------------------- 182 (274)
T 1r0r_E 183 -------------------------------------------------------------------------------- 182 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeeeeecC
Q 044171 448 IKKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHG 527 (813)
Q Consensus 448 ~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 527 (813)
T Consensus 183 -------------------------------------------------------------------------------- 182 (274)
T 1r0r_E 183 -------------------------------------------------------------------------------- 182 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCeeeecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHHHHHHHhC
Q 044171 528 QAPVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRH 607 (813)
Q Consensus 528 ~~~~~s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~ 607 (813)
+.++.||++||.+ ||+|||++|+++++ ++.|..++|||||||||||++|||+|++
T Consensus 183 --~~~~~~S~~G~~~-------------di~APG~~i~s~~~----------~~~~~~~sGTS~AaP~vaG~aAll~~~~ 237 (274)
T 1r0r_E 183 --SNRASFSSVGAEL-------------EVMAPGAGVYSTYP----------TNTYATLNGTSMASPHVAGAAALILSKH 237 (274)
T ss_dssp --SCBCTTCCCSTTE-------------EEEEECSSEEEEET----------TTEEEEECSHHHHHHHHHHHHHHHHHHS
T ss_pred --CCcCccCCCCCCc-------------eEEeCCCCeEeecC----------CCCEEEeccHHHHHHHHHHHHHHHHHHC
Confidence 1367899999865 99999999999984 4589999999999999999999999999
Q ss_pred CCCCHHHHHHHHHccccccCCCCCcccccCCCCCccccccccCCCCCccCccccCccCcCC
Q 044171 608 PKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGFINPARAID 668 (813)
Q Consensus 608 p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaG~vd~~~A~~ 668 (813)
|++++++||++|++||+++. +++.||||++|+.+|++
T Consensus 238 p~lt~~~v~~~L~~tA~~~g------------------------~~~~~G~G~~~~~~A~~ 274 (274)
T 1r0r_E 238 PNLSASQVRNRLSSTATYLG------------------------SSFYYGKGLINVEAAAQ 274 (274)
T ss_dssp TTCCHHHHHHHHHHTCBCCS------------------------CHHHHTTCBCCHHHHTC
T ss_pred CCCCHHHHHHHHHHhCcccC------------------------CCCCcccCccCHHHHhC
Confidence 99999999999999998763 12479999999999985
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-50 Score=426.29 Aligned_cols=256 Identities=31% Similarity=0.515 Sum_probs=212.6
Q ss_pred CCCCCCCCCCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCC
Q 044171 133 VWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDF 212 (813)
Q Consensus 133 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~ 212 (813)
+|.. +++|+||+|||||||||++||+|+. ..+++|..+
T Consensus 16 ~~~~----g~~G~gv~VaViDtGid~~h~~l~~-------------------------------~~g~~~~~~------- 53 (281)
T 1to2_E 16 LHSQ----GYTGSNVKVAVIDSGIDSSHPDLKV-------------------------------AGGASMVPS------- 53 (281)
T ss_dssp HHHH----TCSCTTCEEEEEESCCCTTCTTCCE-------------------------------EEEEECCTT-------
T ss_pred HHhc----CCCCCCCEEEEEcCCCCCCCHHHcC-------------------------------cCCccccCC-------
Confidence 5665 6899999999999999999999952 223333321
Q ss_pred CCCCCCCCCCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-CCHHHHHHHHHHHHhCCCc
Q 044171 213 NSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-GYMADVVAAVDQAVEDGVD 291 (813)
Q Consensus 213 ~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~~ 291 (813)
+.....|..||||||||||+|..+. ..+.||||+|+|+.+|+++..+ +..++++++|+|+++++++
T Consensus 54 ----~~~~~~d~~gHGT~vAgiia~~~~~---------~g~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~~~ 120 (281)
T 1to2_E 54 ----ETNPFQDNNSHGTHVAGTVAALNNS---------IGVLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMD 120 (281)
T ss_dssp ----CCCTTCCSSSHHHHHHHHHHCCSSS---------SSBCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTCS
T ss_pred ----CCCCCCCCCCcHHHHHHHHhccCCC---------CcceeeCCCCEEEEEEEeCCCCCccHHHHHHHHHHHHHCCCc
Confidence 1112357889999999999997421 2368999999999999998876 7788999999999999999
Q ss_pred EEEEccCCCCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCC----CCCCCCCCceEEEeecccCccccceeeec
Q 044171 292 IISLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSS----SSILSFSPWITSIAASITDRKYNNTIKLA 367 (813)
Q Consensus 292 VIn~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~----~~~~~~~~~vitVgA~~~~~~~~~~~~~~ 367 (813)
|||||||.... ...+..+++++.++|++||+||||+|... ..+|+..+++|+|||++.+
T Consensus 121 Vin~S~G~~~~-------~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~~~---------- 183 (281)
T 1to2_E 121 VINMSLGGPSG-------SAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSS---------- 183 (281)
T ss_dssp EEEECEEBSCC-------CHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEECTT----------
T ss_pred EEEECCcCCCC-------CHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCcCCCCEEEEEEecCC----------
Confidence 99999997542 25778888899999999999999999763 4567788999999984311
Q ss_pred CCcEEEeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHH
Q 044171 368 NGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADN 447 (813)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~ 447 (813)
T Consensus 184 -------------------------------------------------------------------------------- 183 (281)
T 1to2_E 184 -------------------------------------------------------------------------------- 183 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeeeeecC
Q 044171 448 IKKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHG 527 (813)
Q Consensus 448 ~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 527 (813)
T Consensus 184 -------------------------------------------------------------------------------- 183 (281)
T 1to2_E 184 -------------------------------------------------------------------------------- 183 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCeeeecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHHHHHHHhC
Q 044171 528 QAPVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRH 607 (813)
Q Consensus 528 ~~~~~s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~ 607 (813)
+.++.||++||.. ||+|||++|+++++ ++.|..++|||||||||||++|||+|++
T Consensus 184 --~~~~~fS~~G~~~-------------di~APG~~i~s~~~----------~~~~~~~sGTS~AaP~vaG~aAll~~~~ 238 (281)
T 1to2_E 184 --NQRASFSSVGPEL-------------DVMAPGVSIQSTLP----------GNKYGAYNGTSMASPHVAGAAALILSKH 238 (281)
T ss_dssp --SCBCTTCCCSTTC-------------CEEEECSSEEEEET----------TTEEEEECBHHHHHHHHHHHHHHHHHHS
T ss_pred --CCcCCcCCCCCCc-------------eEEecCCCeEeecC----------CCCEEecCcHHHHHHHHHHHHHHHHHhC
Confidence 2367899999865 99999999999984 3589999999999999999999999999
Q ss_pred CCCCHHHHHHHHHccccccCCCCCcccccCCCCCccccccccCCCCCccCccccCccCcCCC
Q 044171 608 PKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGFINPARAIDP 669 (813)
Q Consensus 608 p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaG~vd~~~A~~~ 669 (813)
|+|++++||++|++||+++. +++.||||++|+.+|++.
T Consensus 239 p~lt~~~v~~~L~~tA~~~g------------------------~~~~~G~G~v~~~~a~~~ 276 (281)
T 1to2_E 239 PNWTNTQVRSSLENTTTKLG------------------------DSFYYGKGLINVQAAAQH 276 (281)
T ss_dssp TTCCHHHHHHHHHTTCBCCS------------------------CHHHHTTCBCCHHHHTSS
T ss_pred CCCCHHHHHHHHHhhCcccC------------------------CCCCcccceecHHHHhhh
Confidence 99999999999999998763 124799999999999975
|
| >3zxy_A Subtilisin-like protein; hydrolase; 1.58A {Prochloron didemni} PDB: 3zxx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-51 Score=433.10 Aligned_cols=265 Identities=25% Similarity=0.295 Sum_probs=209.7
Q ss_pred CCCC-CCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCCCCCCCCC
Q 044171 141 EFSG-EGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYA 219 (813)
Q Consensus 141 ~~~G-~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~ 219 (813)
.++| +||+|||||||||++||+|.++.. ..+++... ....
T Consensus 3 ~l~G~~gV~VaViDtGid~~Hpdl~g~~~-----------------------------~~~~~~~~----------~~~~ 43 (282)
T 3zxy_A 3 SLKGDHNIRVAILDGPVDIAHPCFQGADL-----------------------------TVLPTLAP----------TAAR 43 (282)
T ss_dssp TCCCCTTSEEEEEESCCCTTSGGGTTCEE-----------------------------EECCCSSC----------CCCC
T ss_pred CCcCCCCCEEEEEcCCCCCCChhHCCCee-----------------------------ecCcCCCC----------CCCC
Confidence 3688 799999999999999999987531 11111100 0112
Q ss_pred CCCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC--CCHHHHHHHHHHHHhCCCcEEEEcc
Q 044171 220 SPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG--GYMADVVAAVDQAVEDGVDIISLSV 297 (813)
Q Consensus 220 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g--~~~~~i~~ai~~a~~~g~~VIn~S~ 297 (813)
...|.+||||||||||+|+.+ ..+.||||+|+|+.+|++.+.+ ....++++||+||++++++||||||
T Consensus 44 ~d~~~~gHGT~VAGiiag~~~----------~~~~GvAp~a~l~~~kv~~~~~~~~~~~~i~~ai~~a~~~~~~Vin~S~ 113 (282)
T 3zxy_A 44 SDGFMSAHGTHVASIIFGQPE----------TSVPGIAPQCRGLIVPIFSDDRRRITQLDLARGIERAVNAGAHIINISG 113 (282)
T ss_dssp TTCHHHHHHHHHHHHHHCCTT----------SSSCCSSTTSEEEEEECSCSSSSCCCHHHHHHHHHHHHHTTCSEEEECC
T ss_pred CCCCCCCcccceeehhhccCC----------ceeeeeccccceEeeEeeccccccchHHHHHHHHHHhhccCCeEEeccC
Confidence 223457999999999999753 2368999999999999987643 6677899999999999999999999
Q ss_pred CCCCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCCCCCCCceEEEeecccCccccceeeecCCcEEEeeec
Q 044171 298 GPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSSSILSFSPWITSIAASITDRKYNNTIKLANGHSFSGIGL 377 (813)
Q Consensus 298 G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~ 377 (813)
|...... .....++.+++.+.++|+++|+||||+|......|+..+++|+|||++.+
T Consensus 114 G~~~~~~---~~~~~~~~ai~~a~~~gi~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~-------------------- 170 (282)
T 3zxy_A 114 GELTDFG---EADGWLENAVSLCRQNNVLLVAAAGNNGCDCLHVPAALPAVLAVGAMDDH-------------------- 170 (282)
T ss_dssp CEEESSS---CCCHHHHHHHHHHHHTTCEEEEECCSSCSSCEEETTTSTTCEEEEEECTT--------------------
T ss_pred ccccccc---cccHHHHHHHHHHhhcCceEEEecccCCCccccCccccceeEEEEEEcCC--------------------
Confidence 9643321 13456788899999999999999999998888888899999999985311
Q ss_pred CCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEE
Q 044171 378 APPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFI 457 (813)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i 457 (813)
T Consensus 171 -------------------------------------------------------------------------------- 170 (282)
T 3zxy_A 171 -------------------------------------------------------------------------------- 170 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeeeeecCCCCeeeeccc
Q 044171 458 LRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPVVASYSS 537 (813)
Q Consensus 458 ~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~s~FSS 537 (813)
+.++.||+
T Consensus 171 ------------------------------------------------------------------------~~~~~~S~ 178 (282)
T 3zxy_A 171 ------------------------------------------------------------------------GHPLDFSN 178 (282)
T ss_dssp ------------------------------------------------------------------------SCBCSSSC
T ss_pred ------------------------------------------------------------------------CccccccC
Confidence 23577899
Q ss_pred CCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHHHHHHHhC----CCCCHH
Q 044171 538 RGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRH----PKWSPA 613 (813)
Q Consensus 538 ~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~----p~~s~~ 613 (813)
||+. ..||||+|||++|+|+.+ ++.|..++|||||||||||++|||+|++ |.++|+
T Consensus 179 ~~~~----------~~~~di~ApG~~i~s~~~----------~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~~~ 238 (282)
T 3zxy_A 179 WGST----------YEQQGILAPGEDILGAKP----------GGGTERLSGTAFATPIVSGVAALLLSEQVRRGETPDPQ 238 (282)
T ss_dssp CCHH----------HHHHEEEEECSSEEEECT----------TSCEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred CCCC----------ccccceeccCcceeeecC----------CCceeecCCCcccchHHHHHHHHHHHHhHhhCCCCCHH
Confidence 9875 367899999999999984 4589999999999999999999999975 789999
Q ss_pred HHHHHHHccccccCCCCCcccccCCCCCccccccccCCCCCccCccccCccCcCC
Q 044171 614 AITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGFINPARAID 668 (813)
Q Consensus 614 ~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaG~vd~~~A~~ 668 (813)
+||++|++||++++.. .+...+.+|+|+||+.+|++
T Consensus 239 ~vk~~L~~tA~~~~~~-------------------~~~~~~~~G~G~ln~~~A~~ 274 (282)
T 3zxy_A 239 KVRQLLLQSALPCDDD-------------------APEQARRCLAGRLNVSGAFT 274 (282)
T ss_dssp HHHHHHHHHCBCC--------------------------CGGGTTCBCCHHHHHH
T ss_pred HHHHHHHhhCeeCCCC-------------------CCCccCceeeeEeCHHHHHH
Confidence 9999999999876421 12334579999999999985
|
| >4h6x_A Thiazoline oxidase/subtilisin-like protease; hydrolase; 2.00A {Prochloron didemni} PDB: 4aks_A 4akt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-52 Score=455.10 Aligned_cols=301 Identities=21% Similarity=0.222 Sum_probs=190.0
Q ss_pred CCCCCCCCCCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCce----EEEEEchhhhhh
Q 044171 133 VWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKI----VGAQYFARAAIA 208 (813)
Q Consensus 133 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki----~g~~~~~~~~~~ 208 (813)
+|+. +..|++|+|||||||||++||+|++..... ....|...++....... ..+..+ ..++.+....
T Consensus 23 ~w~~----~~g~~~V~VaViDtGiD~~Hpdf~g~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-- 93 (357)
T 4h6x_A 23 LHNQ----TLGDPQITIVIIDGDPDYTLSCFEGAEVSK--VFPYWHEPAEPITPEDY-AAFQSIRDQGLKGKEKEEAL-- 93 (357)
T ss_dssp HHHH----CSCCTTSEEEEEESCCCTTSGGGTTCEEEE--CCCTTSCCCCCCCHHHH-HHHHHHHHHTCCSHHHHHHH--
T ss_pred HHHh----cCCCCCCEEEEEcCCCCCCChhHcCCCccc--ccccccccccccCcccc-cccccccCcccccccccccc--
Confidence 6776 567899999999999999999999764311 11245443332110000 000000 0000000000
Q ss_pred cCCCCCCCCCCCCCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC------CCHHHHHHHH
Q 044171 209 YGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG------GYMADVVAAV 282 (813)
Q Consensus 209 ~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g------~~~~~i~~ai 282 (813)
.....+..++.|.+||||||||||+|+.+ +.+.||||+|+|+.+|++.... ....++++||
T Consensus 94 ---~~~~~~~~~~~D~~gHGThVAGiiag~~~----------~g~~GvAp~a~l~~~k~~~~~~~~~~~~~~~~~~~~ai 160 (357)
T 4h6x_A 94 ---EAVIPDTKDRIVLNDHACHVTSTIVGQEH----------SPVFGIAPNCRVINMPQDAVIRGNYDDVMSPLNLARAI 160 (357)
T ss_dssp ---HHHCTTTHHHHHHHHHHHHHHHHHHCCTT----------SSCCCSCTTSEEEEEECTTC----------CHHHHHHH
T ss_pred ---ccccCCCCCCcCCCCcHHHHHHHHhccCC----------CCceEeeccceEEeeeecccCCCCccccccHHHHHHHH
Confidence 00011123345678999999999999753 2468999999999999975421 3445789999
Q ss_pred HHHHhCCCcEEEEccCCCCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCCCCCCCceEEEeecccCccccc
Q 044171 283 DQAVEDGVDIISLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSSSILSFSPWITSIAASITDRKYNN 362 (813)
Q Consensus 283 ~~a~~~g~~VIn~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~vitVgA~~~~~~~~~ 362 (813)
+||++.|++|||||||..... ....+.+..+++++.++|++||+||||+|.....+|+..+++|+|||++.+
T Consensus 161 ~~a~~~g~~Vin~S~G~~~~~---~~~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~~----- 232 (357)
T 4h6x_A 161 DLALELGANIIHCAFCRPTQT---SEGEEILVQAIKKCQDNNVLIVSPTGNNSNESWCLPAVLPGTLAVGAAKVD----- 232 (357)
T ss_dssp HHHHHTTCSEEEEC--------------CHHHHHHHHHHHTTCEEEEECC---------------CEEEEEECTT-----
T ss_pred HHHHHcCCCEEeeccccCCcc---ccchhHHHHHHHHHhhCCeEEEecccCCCCCcCcCcccCCCCceEEEeccC-----
Confidence 999999999999999975433 224567888999999999999999999998888889999999999985311
Q ss_pred eeeecCCcEEEeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHH
Q 044171 363 TIKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIA 442 (813)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~ 442 (813)
T Consensus 233 -------------------------------------------------------------------------------- 232 (357)
T 4h6x_A 233 -------------------------------------------------------------------------------- 232 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCee
Q 044171 443 TVADNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRR 522 (813)
Q Consensus 443 ~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 522 (813)
T Consensus 233 -------------------------------------------------------------------------------- 232 (357)
T 4h6x_A 233 -------------------------------------------------------------------------------- 232 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeecCCCCeeeecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHHHH
Q 044171 523 AIYHGQAPVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAAL 602 (813)
Q Consensus 523 ~~~~~~~~~~s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aAL 602 (813)
+.++.||+||+. ..||||+|||++|+|+++. ++.|..++|||||||||||++||
T Consensus 233 -------~~~~~fSn~G~~----------~~~~di~APG~~i~s~~~~---------~~~~~~~sGTS~AaP~vaG~~Al 286 (357)
T 4h6x_A 233 -------GTPCHFSNWGGN----------NTKEGILAPGEEILGAQPC---------TEEPVRLTGTSMAAPVMTGISAL 286 (357)
T ss_dssp -------SSBCTTCC---C----------TTTTEEEEECSSEEECCTT---------CSCCEEECSHHHHHHHHHHHHHH
T ss_pred -------CcccccccCCCC----------CCccceeecCCCeEeccCC---------CCcccccCcHHHHHHHHHHHHHH
Confidence 236889999975 4699999999999999863 34678899999999999999999
Q ss_pred HHH----hCCCCCHHHHHHHHHccccccCCCCCcccccCCCCCccccccccCCCCCccCccccCccCcCC
Q 044171 603 IKQ----RHPKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGFINPARAID 668 (813)
Q Consensus 603 l~q----~~p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaG~vd~~~A~~ 668 (813)
|++ ++|.|+++|||++|++||++++... ...+++||+|+||+.+|++
T Consensus 287 l~s~~~~~~~~lt~~~v~~~L~~tA~~~~~~~-------------------~~~~~~~G~G~vn~~~A~~ 337 (357)
T 4h6x_A 287 LMSLQVQQGKPVDAEAVRTALLKTAIPCDPEV-------------------VEEPERCLRGFVNIPGAMK 337 (357)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHC---------------------------------CTTCBCCHHHHHH
T ss_pred HHHhhHhhCCCCCHHHHHHHHHhhCccCCCCC-------------------CCCcccceeEEecHHHHHH
Confidence 996 4668999999999999999874221 2234579999999999986
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-50 Score=432.51 Aligned_cols=267 Identities=30% Similarity=0.426 Sum_probs=214.4
Q ss_pred cCCCCCCCCCCCCCCCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhh
Q 044171 127 LGIPVGVWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAA 206 (813)
Q Consensus 127 ~~~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~ 206 (813)
++++. +|+. +++|+||+|||||||||++||+|.++ ++.+++|..+.
T Consensus 28 i~~~~-aw~~----~~~G~gv~VaViDtGid~~Hp~l~~~-----------------------------~~~~~~~~~~~ 73 (327)
T 2x8j_A 28 VEAPA-VWRA----SAKGAGQIIGVIDTGCQVDHPDLAER-----------------------------IIGGVNLTTDY 73 (327)
T ss_dssp TTHHH-HHHH----HGGGTTCEEEEEESCCCTTCTTTGGG-----------------------------EEEEEECSSGG
T ss_pred cChHH-HHhc----CCCCCCCEEEEEcCCCCCCChhHhhc-----------------------------ccCCccccCCC
Confidence 44443 6766 68999999999999999999999863 55566665441
Q ss_pred hhcCCCCCCCCCCCCCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-CCHHHHHHHHHHH
Q 044171 207 IAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-GYMADVVAAVDQA 285 (813)
Q Consensus 207 ~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-~~~~~i~~ai~~a 285 (813)
. .+.....|+.||||||||||+|..+. ..+.||||+|+|+.+|+++..+ +..+++++||+||
T Consensus 74 ~--------~~~~~~~d~~gHGT~VAgiia~~~~~---------~g~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a 136 (327)
T 2x8j_A 74 G--------GDETNFSDNNGHGTHVAGTVAAAETG---------SGVVGVAPKADLFIIKALSGDGSGEMGWIAKAIRYA 136 (327)
T ss_dssp G--------GCTTCCCCSSSHHHHHHHHHHCCCCS---------SBCCCSSTTCEEEEEECSCTTSEECHHHHHHHHHHH
T ss_pred C--------CCCCCCCCCCCchHHHHHHHhccCCC---------CCcEeeCCCCEEEEEEeECCCCCcCHHHHHHHHHHH
Confidence 1 01123568899999999999997421 2368999999999999998877 7788999999999
Q ss_pred Hh------CCCcEEEEccCCCCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCC-----CCCCCCCCceEEEeec
Q 044171 286 VE------DGVDIISLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSS-----SSILSFSPWITSIAAS 354 (813)
Q Consensus 286 ~~------~g~~VIn~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-----~~~~~~~~~vitVgA~ 354 (813)
++ .+++|||||||.... .+.+..+++++.++|++||+||||+|... ..+|+..+++|+|||+
T Consensus 137 ~~~~~~~~~~~~Vin~S~G~~~~-------~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~~Pa~~~~vi~Vga~ 209 (327)
T 2x8j_A 137 VDWRGPKGEQMRIITMSLGGPTD-------SEELHDAVKYAVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGAV 209 (327)
T ss_dssp HHCCCTTSCCCSEEEECEEBSCC-------CHHHHHHHHHHHHTTCEEEEECCCT---------TCBTTTSTTSEEEEEE
T ss_pred HhhcccccCCceEEEECCCcCCC-------CHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCCCceeccccCCCEEEEEEE
Confidence 99 899999999997542 25678888899999999999999999752 4567888999999985
Q ss_pred ccCccccceeeecCCcEEEeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCC
Q 044171 355 ITDRKYNNTIKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDF 434 (813)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~ 434 (813)
+.+
T Consensus 210 ~~~----------------------------------------------------------------------------- 212 (327)
T 2x8j_A 210 DFD----------------------------------------------------------------------------- 212 (327)
T ss_dssp CTT-----------------------------------------------------------------------------
T ss_pred CCC-----------------------------------------------------------------------------
Confidence 311
Q ss_pred CCCchhHHHHHHHHHhcCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeee
Q 044171 435 ENDDATIATVADNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHAR 514 (813)
Q Consensus 435 ~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~ 514 (813)
T Consensus 213 -------------------------------------------------------------------------------- 212 (327)
T 2x8j_A 213 -------------------------------------------------------------------------------- 212 (327)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEccCeeeeecCCCCeeeecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhh
Q 044171 515 ARILDGRRAIYHGQAPVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATP 594 (813)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP 594 (813)
+.++.||++||.+ ||+|||++|+++++ ++.|..++|||||||
T Consensus 213 ---------------~~~~~fS~~G~~~-------------di~APG~~i~s~~~----------~~~~~~~sGTS~AaP 254 (327)
T 2x8j_A 213 ---------------LRLSDFTNTNEEI-------------DIVAPGVGIKSTYL----------DSGYAELSGTAMAAP 254 (327)
T ss_dssp ---------------CCBSCC---CCCC-------------SEEEECSSEEEECS----------TTCEEEEESGGGTHH
T ss_pred ---------------CCCCCccCCCCCc-------------eEecCcCceEeecC----------CCCEEeecCHHHHHH
Confidence 1368899999865 99999999999984 458999999999999
Q ss_pred HHHHHHHHHHHh-----CCCCCHHHHHHHHHccccccCCCCCcccccCCCCCccccccccCCCCCccCccccCccCcCCC
Q 044171 595 HIAGVAALIKQR-----HPKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGFINPARAIDP 669 (813)
Q Consensus 595 ~VAG~aALl~q~-----~p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaG~vd~~~A~~~ 669 (813)
||||++|||+|+ +|.+++.+||++|++||+++.. +++.||+|++|+.+|++.
T Consensus 255 ~VaG~aAll~~~~~~~~~p~ls~~~v~~~L~~tA~~~g~-----------------------~~~~~G~G~vd~~~A~~~ 311 (327)
T 2x8j_A 255 HVAGALALIINLAEDAFKRSLSETEIYAQLVRRATPIGF-----------------------TAQAEGNGFLTLDLVERI 311 (327)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHTTEECCSS-----------------------CHHHHTTCEECTTHHHHH
T ss_pred HHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccCCC-----------------------CCCceeeeEECHHHHHHh
Confidence 999999999999 9999999999999999987631 234799999999999863
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-49 Score=425.22 Aligned_cols=289 Identities=32% Similarity=0.439 Sum_probs=222.6
Q ss_pred cCCCCCCCCCCCCCCCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhh
Q 044171 127 LGIPVGVWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAA 206 (813)
Q Consensus 127 ~~~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~ 206 (813)
++++. +|.. +++|+||+|||||||||++||+|.++ +...++|....
T Consensus 13 i~~~~-~w~~----~~~G~gv~VaViDtGvd~~H~~l~~~-----------------------------~~~~~~~~~~~ 58 (310)
T 2ixt_A 13 IYNND-TLTS----TTGGSGINIAVLDTGVNTSHPDLVNN-----------------------------VEQCKDFTGAT 58 (310)
T ss_dssp HHTCT-TCCC----CCCCTTCEEEEEESCCCTTCTTTTTT-----------------------------EEEEEESSSSS
T ss_pred cCchh-hhhc----cCCCCCcEEEEEecCCCCCCHHHhhc-----------------------------ccccccccCCC
Confidence 44444 7765 68999999999999999999999864 34445554320
Q ss_pred hhcCCCCCCCCCCCCCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-CCHHHHHHHHHHH
Q 044171 207 IAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-GYMADVVAAVDQA 285 (813)
Q Consensus 207 ~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-~~~~~i~~ai~~a 285 (813)
........|..||||||||||+|.... +...+.||||+|+|+.+|++++.+ +..+++++||+|+
T Consensus 59 --------~~~~~~~~d~~gHGT~vAgiia~~~~~-------n~~g~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a 123 (310)
T 2ixt_A 59 --------TPINNSCTDRNGHGTHVAGTALADGGS-------DQAGIYGVAPDADLWAYKVLLDSGSGYSDDIAAAIRHA 123 (310)
T ss_dssp --------SCEETCCCCSSSHHHHHHHHHHCBCCT-------TSCSCBCSCTTSEEEEEECSCTTSCCCHHHHHHHHHHH
T ss_pred --------CCCCCCCCCCCCCHHHHHHHHhccCCC-------CCCceEEECCCCEEEEEEEEcCCCCCcHHHHHHHHHHH
Confidence 001123467899999999999987421 123468999999999999998876 7888999999999
Q ss_pred HhCCC-----cEEEEccCCCCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCC--CCCCCCCCCceEEEeecccCc
Q 044171 286 VEDGV-----DIISLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPS--SSSILSFSPWITSIAASITDR 358 (813)
Q Consensus 286 ~~~g~-----~VIn~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~--~~~~~~~~~~vitVgA~~~~~ 358 (813)
+++++ +|||||||.... ...+..+++++.++|++||+||||+|.. ...+|+..+++|+|||++...
T Consensus 124 ~~~~~~~~~~~Vin~S~G~~~~-------~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~~~Pa~~~~vi~Vga~~~~~ 196 (310)
T 2ixt_A 124 ADQATATGTKTIISMSLGSSAN-------NSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQ 196 (310)
T ss_dssp HHHHHHHTCCEEEEECCCBSSC-------CHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEE
T ss_pred HHhhhccCCCeEEEEcCCCCCC-------CHHHHHHHHHHHhCCcEEEEcCCCCCCCCCCCCCcccCCCeeEEEeccccc
Confidence 99887 999999997542 3567888889999999999999999975 345678889999999854100
Q ss_pred cccceeeecCCcEEEeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCc
Q 044171 359 KYNNTIKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDD 438 (813)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~ 438 (813)
.
T Consensus 197 ~------------------------------------------------------------------------------- 197 (310)
T 2ixt_A 197 Q------------------------------------------------------------------------------- 197 (310)
T ss_dssp E-------------------------------------------------------------------------------
T ss_pred c-------------------------------------------------------------------------------
Confidence 0
Q ss_pred hhHHHHHHHHHhcCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEc
Q 044171 439 ATIATVADNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARIL 518 (813)
Q Consensus 439 ~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 518 (813)
.
T Consensus 198 ------------------------~------------------------------------------------------- 198 (310)
T 2ixt_A 198 ------------------------N------------------------------------------------------- 198 (310)
T ss_dssp ------------------------T-------------------------------------------------------
T ss_pred ------------------------C-------------------------------------------------------
Confidence 0
Q ss_pred cCeeeeecCCCCeeeecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHH
Q 044171 519 DGRRAIYHGQAPVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAG 598 (813)
Q Consensus 519 ~~~~~~~~~~~~~~s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG 598 (813)
....++.||++||....- ....++.||||+|||++|+++++ ++.|..++|||||||||||
T Consensus 199 ---------g~~~~~~~S~~G~~~~~g-~~~~~~~~~di~ApG~~i~s~~~----------~~~~~~~sGTS~AaP~vaG 258 (310)
T 2ixt_A 199 ---------GTYRVADYSSRGYISTAG-DYVIQEGDIEISAPGSSVYSTWY----------NGGYNTISGTSMATPHVSG 258 (310)
T ss_dssp ---------TEEEECTTSCCCCTTTTT-SSSCCTTCCCEEEECSSEEEECT----------TSSEEEECSHHHHHHHHHH
T ss_pred ---------CCeeeccccCCCCccCCc-cccccCCCeeEECCCCCEeeecC----------CCCEEeeccHHHHHHHHHH
Confidence 000368899999853210 00012459999999999999984 4589999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHccccccCCCCCcccccCCCCCccccccccCCCCCccCccccCc
Q 044171 599 VAALIKQRHPKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGFINP 663 (813)
Q Consensus 599 ~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaG~vd~ 663 (813)
++|||+|++|+|++++||++|++||++++..+.. ...+..+..+|||++|+
T Consensus 259 ~aAll~~~~p~lt~~~v~~~L~~tA~~~~~~~~~--------------~a~~g~d~~~G~G~~~v 309 (310)
T 2ixt_A 259 LAAKIWAENPSLSNTQLRSNLQERAKSVDIKGGY--------------GAAIGDDYASGFGFARV 309 (310)
T ss_dssp HHHHHHHHSTTCCHHHHHHHHHHHHHTSCCCBST--------------TCCSSSBTTTBTCBCCC
T ss_pred HHHHHHHhCCCCCHHHHHHHHHhhCcccCCCCCc--------------ccccCCccccccceeec
Confidence 9999999999999999999999999987533210 12345667899999986
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-49 Score=427.97 Aligned_cols=268 Identities=29% Similarity=0.470 Sum_probs=218.6
Q ss_pred ccCCCCCCCCCCCCCCCCCC--CcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEch
Q 044171 126 FLGIPVGVWPTLGGAEFSGE--GVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFA 203 (813)
Q Consensus 126 ~~~~~~~~w~~~~~~~~~G~--gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~ 203 (813)
.++++. +|+. + +|+ ||+|||||||||++||+|.++ +..+++|.
T Consensus 14 ~i~~~~-aw~~----~-~G~~~gv~VaViDtGid~~Hp~l~~~-----------------------------~~~~~~~~ 58 (320)
T 2z30_A 14 RVKAPS-VWSI----T-DGSVSVIQVAVLDTGVDYDHPDLAAN-----------------------------IAWCVSTL 58 (320)
T ss_dssp HTTCGG-GTTT----C-CSCCTTCEEEEEESCBCTTCTTTGGG-----------------------------EEEEEECG
T ss_pred hcChHH-HHHh----c-CCCcCCeEEEEECCCCCCCChhHhcc-----------------------------cccCcccc
Confidence 455554 7876 3 899 999999999999999999863 44455555
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-CCHHHHHHHH
Q 044171 204 RAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-GYMADVVAAV 282 (813)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-~~~~~i~~ai 282 (813)
.+.. ........|.+||||||||||+|..+. ..+.||||+|+|+.+|+++..+ +..+++++||
T Consensus 59 ~~~~-------~~~~~~~~d~~gHGT~vAgiia~~~n~---------~g~~GvAp~a~l~~~~v~~~~g~~~~~~i~~ai 122 (320)
T 2z30_A 59 RGKV-------STKLRDCADQNGHGTHVIGTIAALNND---------IGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGI 122 (320)
T ss_dssp GGCC-------BCCHHHHBCSSSHHHHHHHHHHCCSSS---------BSCCCSSTTCEEEEEECSCTTSEEEHHHHHHHH
T ss_pred CCcc-------CCCCCCCCCCCCCHHHHHHHHHcccCC---------CceEeeCCCCEEEEEEeeCCCCCccHHHHHHHH
Confidence 4310 000012357889999999999997321 2468999999999999998877 7788999999
Q ss_pred HHHHhC--------------------CCcEEEEccCCCCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCCC
Q 044171 283 DQAVED--------------------GVDIISLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSSSIL 342 (813)
Q Consensus 283 ~~a~~~--------------------g~~VIn~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~ 342 (813)
+||++. +++|||||||.... ...+..+++++.++|++||+||||+|.....+|
T Consensus 123 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~~-------~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~P 195 (320)
T 2z30_A 123 EQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPAD-------DSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYP 195 (320)
T ss_dssp HHHHHTTTTCSCTTSSSCCTTCTTSCCCSEEEECEEBSCC-------CHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBT
T ss_pred HHHHhCcccccccccccccccccccCCceEEEecCCCCCC-------CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCc
Confidence 999987 99999999997542 256778888899999999999999998878889
Q ss_pred CCCCceEEEeecccCccccceeeecCCcEEEeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCccccc
Q 044171 343 SFSPWITSIAASITDRKYNNTIKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVR 422 (813)
Q Consensus 343 ~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~ 422 (813)
+..+++|+|||++.+
T Consensus 196 a~~~~vi~Vga~~~~----------------------------------------------------------------- 210 (320)
T 2z30_A 196 AAYPEVIAVGAIDSN----------------------------------------------------------------- 210 (320)
T ss_dssp TTSTTEEEEEEECTT-----------------------------------------------------------------
T ss_pred ccCCCeEEEEeeCCC-----------------------------------------------------------------
Confidence 999999999985311
Q ss_pred ceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCcc
Q 044171 423 GKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIK 502 (813)
Q Consensus 423 Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~ 502 (813)
T Consensus 211 -------------------------------------------------------------------------------- 210 (320)
T 2z30_A 211 -------------------------------------------------------------------------------- 210 (320)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCceeeeeeeEEEccCeeeeecCCCCeeeecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCc
Q 044171 503 SRAGQAVVFHARARILDGRRAIYHGQAPVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRN 582 (813)
Q Consensus 503 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~ 582 (813)
+.++.||++|| +|+|||++|+|+++ ++.
T Consensus 211 ---------------------------~~~~~~S~~g~---------------~v~APG~~i~s~~~----------~~~ 238 (320)
T 2z30_A 211 ---------------------------DNIASFSNRQP---------------EVSAPGVDILSTYP----------DDS 238 (320)
T ss_dssp ---------------------------SCBCTTSCSSC---------------SEEEECSSEEEEET----------TTE
T ss_pred ---------------------------CCcCcccCCCC---------------CEEeCCCCeEEecc----------CCC
Confidence 13678999987 67999999999984 358
Q ss_pred ceeeeccCChhhHHHHHHHHHHHhC-------------CCCCHHHHHHHHHccccccCCCCCcccccCCCCCcccccccc
Q 044171 583 FALLSGTSMATPHIAGVAALIKQRH-------------PKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLV 649 (813)
Q Consensus 583 y~~~sGTSMAaP~VAG~aALl~q~~-------------p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (813)
|..++|||||||||||++|||+|++ |.+++.+||++|++||+++...+
T Consensus 239 ~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~~~~~~p~lt~~~v~~~L~~ta~~~~~~g------------------- 299 (320)
T 2z30_A 239 YETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTG------------------- 299 (320)
T ss_dssp EEEECSHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCCTTCCSTTSHHHHHHHHSBCCSSSS-------------------
T ss_pred eEeccCHHHHHHHHHHHHHHHHHhchhhcccccccccCCCCCHHHHHHHHHhhCccCCCCC-------------------
Confidence 9999999999999999999999999 99999999999999999764322
Q ss_pred CCCCCccCccccCccCcCCC
Q 044171 650 HATPFDFGAGFINPARAIDP 669 (813)
Q Consensus 650 ~~~~~~~GaG~vd~~~A~~~ 669 (813)
.+..||||++|+.+|++.
T Consensus 300 --~~~~~G~G~vd~~~A~~~ 317 (320)
T 2z30_A 300 --WDADYGYGVVRAALAVQA 317 (320)
T ss_dssp --SBTTTBTCBCCHHHHHHH
T ss_pred --CCCCcCCceeCHHHHHHH
Confidence 234799999999999863
|
| >4h6w_A N-terminal cyanobactin protease; hydrolase; 2.45A {Planktothrix agardhii nies-596} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-50 Score=432.43 Aligned_cols=273 Identities=25% Similarity=0.352 Sum_probs=215.3
Q ss_pred CCCCCCCCCCCCCCCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhh
Q 044171 128 GIPVGVWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAI 207 (813)
Q Consensus 128 ~~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~ 207 (813)
++++ +|+. ...++||+|||||||||++||+|.++.. ....++..+
T Consensus 9 G~~~-aW~~----~~G~~gV~VaViDtGid~~Hpdl~g~~~----------------------------~~~~~~~~~-- 53 (306)
T 4h6w_A 9 GLKK-LWSE----TRGDPKICVAVLDGIVDQNHPCFIGADL----------------------------TRLPSLVSG-- 53 (306)
T ss_dssp THHH-HHHH----CSCCTTCEEEEESSCCCTTSGGGTTCEE----------------------------EECC-------
T ss_pred CHHH-HHhh----hCCCCCCEEEEEcCCCCCCChhHcCCcc----------------------------cCCCcccCC--
Confidence 4444 8887 3345899999999999999999987531 111112111
Q ss_pred hcCCCCCCCCCCCCCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC--CCHHHHHHHHHHH
Q 044171 208 AYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG--GYMADVVAAVDQA 285 (813)
Q Consensus 208 ~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g--~~~~~i~~ai~~a 285 (813)
+.....|.+||||||||||+|+.+ +.+.||||+|+|+.+|++.+.+ ....++++||+||
T Consensus 54 ---------~~~~~~d~~gHGThVAGiiag~~~----------~~~~GVAp~a~l~~~kv~~~~~~~~~~~~i~~ai~~a 114 (306)
T 4h6w_A 54 ---------EANANGSMSTHGTHVASIIFGQHD----------SPVTGIAPQCRGLIVPVFADESLKLSQLDLSRAIEQA 114 (306)
T ss_dssp --------------CCCCHHHHHHHHHHHCCTT----------SSSCCSSTTSEEEECCCCCSSSCCCCHHHHHHHHHHH
T ss_pred ---------CCCCCCCCCCchHHHHHHHHcccc----------CCcceeccccccceeeccccccccchHHHHHHHHHHh
Confidence 112234678999999999999743 2468999999999999997643 6777899999999
Q ss_pred HhCCCcEEEEccCCCCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCCCCCCCceEEEeecccCccccceee
Q 044171 286 VEDGVDIISLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSSSILSFSPWITSIAASITDRKYNNTIK 365 (813)
Q Consensus 286 ~~~g~~VIn~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~vitVgA~~~~~~~~~~~~ 365 (813)
++++++|||||||...... .....++.+++.+.++|+++|+||||+|.....+|+..+++|+|||++..
T Consensus 115 ~~~g~~vi~~s~g~~~~~~---~~~~~~~~ai~~a~~~gi~vvaaagn~g~~~~~~Pa~~~~vi~Vga~~~~-------- 183 (306)
T 4h6w_A 115 VNNGANIINVSAGQLTDAG---EADTWLEKAIQLCQENNVLLIAATGNDGCECLHVPASLPTVLAVGAMDDQ-------- 183 (306)
T ss_dssp HHTTCSEEEECCCEEESSS---CCCHHHHHHHHHHHHTTCEEEEECCSSSSBCEEETTTSTTCEEEEEECTT--------
T ss_pred hcccceeeeccccccccCC---CccHHHHHHHHHHHHcCCeEEEecCCCCcccccccccCCcceEEEEecCC--------
Confidence 9999999999999643221 13466888899999999999999999998887888889999999985311
Q ss_pred ecCCcEEEeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHH
Q 044171 366 LANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVA 445 (813)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~ 445 (813)
T Consensus 184 -------------------------------------------------------------------------------- 183 (306)
T 4h6w_A 184 -------------------------------------------------------------------------------- 183 (306)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhcCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeeeee
Q 044171 446 DNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIY 525 (813)
Q Consensus 446 ~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 525 (813)
T Consensus 184 -------------------------------------------------------------------------------- 183 (306)
T 4h6w_A 184 -------------------------------------------------------------------------------- 183 (306)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCeeeecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHHHHHHH
Q 044171 526 HGQAPVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQ 605 (813)
Q Consensus 526 ~~~~~~~s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q 605 (813)
+.+++||++|+. ..||||+|||++|+|+.+ ++.|..++|||||||||||++|||++
T Consensus 184 ----~~~~~~s~~g~~----------~~~~di~APG~~i~s~~~----------~~~~~~~sGTS~AaP~VaG~~All~s 239 (306)
T 4h6w_A 184 ----GKPVDFSNWGDA----------YQKQGILAPGKDILGAKP----------NGGTIRLSGTSFATPIVSGVAALLLS 239 (306)
T ss_dssp ----SCBCSSSCBCHH----------HHHHEEEEECSSEEEECT----------TSCEEEECSHHHHHHHHHHHHHHHHH
T ss_pred ----CCccccccccCC----------cCcceeecCCcCcccccC----------CCceeccCCCcchhHHHHHHHHHHHH
Confidence 135678888875 367899999999999984 45899999999999999999999986
Q ss_pred ----hCCCCCHHHHHHHHHccccccCCCCCcccccCCCCCccccccccCCCCCccCccccCccCcCC
Q 044171 606 ----RHPKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGFINPARAID 668 (813)
Q Consensus 606 ----~~p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaG~vd~~~A~~ 668 (813)
++|.++|++||++|++||+++...+. .....||+|+||+.+|++
T Consensus 240 ~~~~~~p~~t~~~v~~~L~~tA~~~~~~~~-------------------~~~~~~G~G~ln~~~Av~ 287 (306)
T 4h6w_A 240 LQIKRGEKPDPQKVKNALLASATPCNPKDT-------------------DDQSRCLMGKLNILDAIE 287 (306)
T ss_dssp HHHHTTCCCCHHHHHHHHHHTCBCCCTTTC-------------------SCGGGGTTCBCCHHHHHH
T ss_pred HHHhhCCCCCHHHHHHHHHhhCccCCCCCC-------------------CCCCCcceeecCHHHHHH
Confidence 46999999999999999998754332 123479999999999986
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-48 Score=464.04 Aligned_cols=412 Identities=20% Similarity=0.231 Sum_probs=273.3
Q ss_pred CcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCCCCCCCCCCCCCCC
Q 044171 146 GVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYASPFDAD 225 (813)
Q Consensus 146 gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~~ 225 (813)
+|+|||||||+|.+|++.... ..|+...+.+. | .+.+.+..++.++. +......|++
T Consensus 214 ~V~VAVIDTG~d~DL~d~~~l--------~~Y~~~~dyg~-F-----~D~v~~~~n~~Ddg---------d~~~~v~D~~ 270 (1354)
T 3lxu_X 214 DGWLTIVDTTEQGDLDQALRI--------GEYSRTHETRN-V-----DDFLSISVNVHDEG---------NVLEVVGMSS 270 (1354)
T ss_dssp SSCEEEECSSSSCCSSCSEEE--------ECTTTTCCCCE-E-----SSSCEEEEEEEGGG---------TEEEEEECCC
T ss_pred CEEEEEEeCCCCCCccccccc--------ccccccccccc-c-----ccccCCCCccCCCC---------CccccCCCCC
Confidence 699999999998766654321 01111111110 0 12344444444320 0001124789
Q ss_pred CCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCCC---CHHHHHHHHHHHHh-----CCCcEEEEcc
Q 044171 226 GHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFGG---YMADVVAAVDQAVE-----DGVDIISLSV 297 (813)
Q Consensus 226 gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g~---~~~~i~~ai~~a~~-----~g~~VIn~S~ 297 (813)
||||||||||+|.. + ...+.||||+|+|+.+|+++..++ ..++++.+|.+|++ .|++||||||
T Consensus 271 GHGThVAGIIAa~~-N--------~~g~~GVAP~AkI~~vKVld~~~g~~~t~s~l~~AI~~Aid~a~~~~gadVINmS~ 341 (1354)
T 3lxu_X 271 PHGTHVSSIASGNH-S--------SRDVDGVAPNAKIVSMTIGDGRLGSMETGTALVRAMTKVMELCRDGRRIDVINMSY 341 (1354)
T ss_dssp HHHHHHHHHHCCCC-S--------SSSSCCSCTTCEEEEEECBCTTTSSCBCHHHHHHHHHHHHHHHHTTCCCCEEEECC
T ss_pred CcHHHHHHHHhcCC-C--------CCCceeecCCCEEEEEEeccCCCCcccChHHHHHHHHHHHHHHhhcCCceEEEcCC
Confidence 99999999999985 2 134689999999999999987542 45677777777777 7999999999
Q ss_pred CCCCCCCCChhhhhHHHHHHHHHH-hCCcEEEEecCCCCCCCCC--CCCC--CCceEEEeecccCccccceeeecCCcEE
Q 044171 298 GPSAVPSGPAAFLNALEMELLFAT-KAGVLVVQAAGNSGPSSSS--ILSF--SPWITSIAASITDRKYNNTIKLANGHSF 372 (813)
Q Consensus 298 G~~~~~~~~~~~~~~~~~a~~~a~-~~Gi~vV~AAGN~g~~~~~--~~~~--~~~vitVgA~~~~~~~~~~~~~~~~~~~ 372 (813)
|....... .+.+..++.++. ++|++||+||||+|..... .|+. ++++|+|||++........+..
T Consensus 342 G~~~~~~~----~~~l~~aI~~A~~~~GVlVVaAAGN~G~~~~ti~~PA~~ss~~VItVGAtd~~~~~~a~ys~------ 411 (1354)
T 3lxu_X 342 GEHANWSN----SGRIGELMNEVVNKYGVVWVASAGNHGPALCTVGTPPDISQPSLIGVGAYVSPQMMEAEYAM------ 411 (1354)
T ss_dssp CCCCSCSS----CCHHHHHHHHHHHTSCCEEEEECCSCCSSSSCCCTTTCSSSSCEEEEEEECCTTCCCC----------
T ss_pred ccCCCCCc----cHHHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCcccccCCceEEEEeecCCCCccccccc------
Confidence 98754322 245666777775 8999999999999976433 4664 8999999997643211000000
Q ss_pred EeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcC
Q 044171 373 SGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIE 452 (813)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~G 452 (813)
T Consensus 412 -------------------------------------------------------------------------------- 411 (1354)
T 3lxu_X 412 -------------------------------------------------------------------------------- 411 (1354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeeeeecCCCCee
Q 044171 453 AAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPVV 532 (813)
Q Consensus 453 a~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 532 (813)
.....+.+
T Consensus 412 ------------------------------------------------------------------------~~~~~g~~ 419 (1354)
T 3lxu_X 412 ------------------------------------------------------------------------REKLPGNV 419 (1354)
T ss_dssp ------------------------------------------------------------------------------CC
T ss_pred ------------------------------------------------------------------------ccCCCCcc
Confidence 00001357
Q ss_pred eecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHHHHHHH----hCC
Q 044171 533 ASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQ----RHP 608 (813)
Q Consensus 533 s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q----~~p 608 (813)
+.|||+||+.+ +++||||+|||++|+++... .++.|..++|||||||||||++|||++ ++|
T Consensus 420 asFSS~GPt~d-------g~~KpDIaAPG~~I~St~~~--------~~~~y~~~SGTSmAAP~VAGvAALLLSalkq~~P 484 (1354)
T 3lxu_X 420 YTWTSRDPCID-------GGQGVTVCAPGGAIASVPQF--------TMSKSQLMNGTSMAAPHVAGAVALLISGLKQQNI 484 (1354)
T ss_dssp CCCCCCSCCSS-------SSCCEEEEEEC-----------------------CCCCGGGCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccCCCCCcc-------CCCcceEEecCceEEEeecC--------CCCceecCCCCCHHHHHHHHHHHHHHHhhHhhCC
Confidence 99999999986 79999999999999998543 235899999999999999999999986 899
Q ss_pred CCCHHHHHHHHHccccccCCCCCcccccCCCCCccccccccCCCCCccCccccCccCcCCCCeeeecchhhHHHhhccCC
Q 044171 609 KWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGFINPARAIDPGLIFNAHFQEYVQFLCAVP 688 (813)
Q Consensus 609 ~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaG~vd~~~A~~~~lv~~~~~~~~~~~~~~~~ 688 (813)
++++.+||++|++||+++.. .+++.||||+||+.+|++....++....+++.|+|.++
T Consensus 485 ~LTp~qVk~lL~~TA~~~~~----------------------~~~~~~G~GlLDa~~AV~~a~~~~~~p~~~v~f~~~v~ 542 (1354)
T 3lxu_X 485 EYSPYSIKRAISVTATKLGY----------------------VDPFAQGHGLLNVEKAFEHLTEHRQSKDNMLRFSVRVG 542 (1354)
T ss_dssp CCCHHHHHHHHHTTSBCCTT----------------------SCTTTSSSSBCCHHHHHHHHHTTTTCGGGGEEEEEEET
T ss_pred CCCHHHHHHHHHHhCccCCC----------------------CCcccccCCEeCHHHHHHHHHhcCCCCccceEEEEEec
Confidence 99999999999999987642 23458999999999999988888888888999999887
Q ss_pred CCCccceeeecccCccCCCCCCCCCCCCCcEEEeccCccEEEEEEEEecC-------C-CCeeEEEEEeCCCC-cEEEEe
Q 044171 689 GVDDDYVRRVTGYGCPTENQGWCSDLNTPSITISNLVGSRKVIRRVRNVS-------S-ANETYTVTVKEPSG-VKVSVS 759 (813)
Q Consensus 689 ~~~~~~i~~~~~~~~~~~~~~~~~~~n~~s~~~~~~~~~~~~~~tv~N~~-------~-~~~ty~~~~~~~~g-~~v~~~ 759 (813)
..+...|...... .....+++++|+-.- + ....|.+.+..... --|+.
T Consensus 543 ~~~~rgIylR~~~----------------------~~~~~~~tv~V~p~f~~~~~~~~~~~i~f~~~l~L~~t~~wv~~- 599 (1354)
T 3lxu_X 543 NNADKGIHLRQGV----------------------QRNSIDYNVYIEPIFYNDKEADPKDKFNFNVRLNLIASQPWVQC- 599 (1354)
T ss_dssp TTTBSSEEECSSC----------------------CCSCEEEEEEEEEEESSCSCSSSTTCSCCCCEEEEEESSTTEEE-
T ss_pred CCCCCceEEeccc----------------------cCCceEEEEEEeeeecCcccCChhhccceEEEEEEecCCCceec-
Confidence 5444444332210 012334444443221 1 12222222221111 12333
Q ss_pred cCeEEEecCcEEEEEEEEEEecCCCCeEEEEEEEEe----CCcceEEEeEEEEEecc
Q 044171 760 PQVFKIRGLASRELKIVLKATNSTRAYSFGAMVLQG----NNNHIIRIPIAVYVSTS 812 (813)
Q Consensus 760 ~~~~~v~~g~~~~~~vt~~~~~~~~~~~~G~i~~~~----~~~~~l~~P~~~~~~~~ 812 (813)
|+.+.| .++.++|.|++++.....+.+++.|..-. .-++.+|||+.+..+..
T Consensus 600 p~~l~l-~~~~r~~~v~vDp~~L~~G~h~~~v~~~D~~~~~~gp~f~ipvTv~~P~~ 655 (1354)
T 3lxu_X 600 GAFLDL-SYGTRSIAVRVDPTGLQPGVHSAVIRAYDTDCVQKGSLFEIPVTVVQPHV 655 (1354)
T ss_dssp CSCEEC-TTSCEEEEEEECGGGCCSEEEEEEEEEEESSCTTSCCSEEEEEEEEECBC
T ss_pred ccceee-cCCCceEEEEECCCCCCCcceeEEEEEEEcCCcccCceEEeeEEEEeeee
Confidence 777777 78999999999999888888999998764 24689999999987654
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-48 Score=428.97 Aligned_cols=274 Identities=19% Similarity=0.149 Sum_probs=217.0
Q ss_pred ccCCCCCCCCCCCCCCCCCC--CcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEch
Q 044171 126 FLGIPVGVWPTLGGAEFSGE--GVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFA 203 (813)
Q Consensus 126 ~~~~~~~~w~~~~~~~~~G~--gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~ 203 (813)
.++++. +|+. ++|+ ||+||||||||| +||+|.++ ++.+++|.
T Consensus 29 ~i~~~~-aw~~-----~~G~~~gv~VaViDsGid-~Hp~l~~~-----------------------------~~~~~~~~ 72 (347)
T 2iy9_A 29 AIGLTE-TTMS-----LTDKNTPVVVSVVDSGVA-FIGGLSDS-----------------------------EFAKFSFT 72 (347)
T ss_dssp HHTCCH-HHHH-----TSCTTSCCEEEEEESCCC-CCGGGTTC-----------------------------EEEEEECB
T ss_pred hCChHH-HHHH-----hcCCCCCCEEEEEcCCCc-CChhhhcC-----------------------------cccCCccc
Confidence 345544 7776 6899 999999999999 99999864 44455554
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCCCCHHHHHHHHH
Q 044171 204 RAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFGGYMADVVAAVD 283 (813)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g~~~~~i~~ai~ 283 (813)
.+. ...+...+.|..||||||||||+|.. ++.||||+|+|+.+|++++.+.. ++++||+
T Consensus 73 ~~~-------~~~~~~~~~d~~gHGT~vAgiia~~~------------g~~GvAp~a~l~~~~v~~~~~~~--~~~~ai~ 131 (347)
T 2iy9_A 73 QDG-------SPFPVKKSEALYIHGTAMASLIASRY------------GIYGVYPHALISSRRVIPDGVQD--SWIRAIE 131 (347)
T ss_dssp TTC-------CSSCCSSSHHHHHHHHHHHHHHHCSS------------SSCCSSTTCEEEEEECCSSBCTT--HHHHHHH
T ss_pred CCC-------CCCCCCCCCCCCCcHHHHHHHHhccc------------CCcccCCCCEEEEEEEecCCCHH--HHHHHHH
Confidence 320 00111244578899999999999971 25799999999999999875533 9999999
Q ss_pred HHHhC------CCcEEEEccCCCCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCC-------CCCCCCCCC----
Q 044171 284 QAVED------GVDIISLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPS-------SSSILSFSP---- 346 (813)
Q Consensus 284 ~a~~~------g~~VIn~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~-------~~~~~~~~~---- 346 (813)
||+++ |++|||||||..... ...+.+..+++.+.++|++||+||||+|.. ...+|+..+
T Consensus 132 ~a~~~~~~~~~~~~Vin~S~G~~~~~----~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~~~~~Pa~~~~~~~ 207 (347)
T 2iy9_A 132 SIMSNVFLAPGEEKIINISGGQKGVA----SASVWTELLSRMGRNNDRLIVAAVGNDGADIRKLSAQQRIWPAAYHPVSS 207 (347)
T ss_dssp HHHTCTTSCTTEEEEEEESSCBCCC-----CCHHHHHHHHHHHHHTSCEEEEECCBSCCBTTTSCTTTSCBTTTCCCCSH
T ss_pred HHHhhhhcccCCceEEEeccccCCCC----CcCHHHHHHHHHHHhCCeEEEEeCCCCCCCCCCcccccccCCCcCccccc
Confidence 99999 999999999975422 235678889999999999999999999975 346777788
Q ss_pred ------ceEEEeeccc--CccccceeeecCCcEEEeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCc
Q 044171 347 ------WITSIAASIT--DRKYNNTIKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIP 418 (813)
Q Consensus 347 ------~vitVgA~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~ 418 (813)
++|+|||++. +....
T Consensus 208 ~~~~~~~vi~Vga~~~~~~g~~~--------------------------------------------------------- 230 (347)
T 2iy9_A 208 VNKKQDPVIRVAALAQYRKGETP--------------------------------------------------------- 230 (347)
T ss_dssp HHHHTCCEEEEEEECCCCTTSCC---------------------------------------------------------
T ss_pred cccccCCEEEEEEcccCCCCcee---------------------------------------------------------
Confidence 9999999653 11000
Q ss_pred ccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhh
Q 044171 419 ALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNS 498 (813)
Q Consensus 419 ~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~ 498 (813)
T Consensus 231 -------------------------------------------------------------------------------- 230 (347)
T 2iy9_A 231 -------------------------------------------------------------------------------- 230 (347)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCccCCCCceeeeeeeEEEccCeeeeecCCCCeeeecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCC
Q 044171 499 HTIKSRAGQAVVFHARARILDGRRAIYHGQAPVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNL 578 (813)
Q Consensus 499 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~ 578 (813)
...+.++.||++||+ ||||+|||++|+++++
T Consensus 231 ----------------------------~~~~~~~~fS~~G~~------------~~di~APG~~i~s~~~--------- 261 (347)
T 2iy9_A 231 ----------------------------VLHGGGITGSRFGNN------------WVDIAAPGQNITFLRP--------- 261 (347)
T ss_dssp ----------------------------CBCCCSSSCBCBCTT------------TCSEEEECSSEEEECT---------
T ss_pred ----------------------------cccCCCCCCCCCCCC------------CCEEEeCCCCeEeecC---------
Confidence 000135799999983 4599999999999984
Q ss_pred CCCcceeeeccCChhhHHHHHHHHHHHhCCCCCHHHHHHHHHccccccCCCCCcccccCCCCCccccccccCCCCCccCc
Q 044171 579 KGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGA 658 (813)
Q Consensus 579 ~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga 658 (813)
++.|..++|||||||||||++|||+|++|++++.+||++|++||+++...+ ...+|+
T Consensus 262 -~~~~~~~sGTS~AaP~VaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~~~----------------------~~~~G~ 318 (347)
T 2iy9_A 262 -DAKTGTGSGTSEATAIVSGVLAAMTSCNPRATATELKRTLLESADKYPSLV----------------------DKVTEG 318 (347)
T ss_dssp -TSCEEEECSHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHSEECGGGT----------------------TTSGGG
T ss_pred -CCCeEeccchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCCCCC----------------------CccccC
Confidence 458999999999999999999999999999999999999999999864321 248999
Q ss_pred cccCccCcCCC
Q 044171 659 GFINPARAIDP 669 (813)
Q Consensus 659 G~vd~~~A~~~ 669 (813)
|++|+.+|++.
T Consensus 319 G~ld~~~A~~~ 329 (347)
T 2iy9_A 319 RVLNAEKAISM 329 (347)
T ss_dssp EECCHHHHHHH
T ss_pred CEecHHHHHHH
Confidence 99999999964
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-47 Score=433.72 Aligned_cols=293 Identities=26% Similarity=0.363 Sum_probs=222.3
Q ss_pred cCCCCCCCCCCCCCCCCCCCcEEEEEeeccCC------CCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEE
Q 044171 127 LGIPVGVWPTLGGAEFSGEGVVIGFIDTGINP------EHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQ 200 (813)
Q Consensus 127 ~~~~~~~w~~~~~~~~~G~gv~VaVIDtGid~------~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~ 200 (813)
++++. +|.. .+++|+||+|||||||||. .||+|.++ +...+
T Consensus 8 i~~~~-~~~~---~g~~G~gv~VaViDtGvd~~~~~~~~hp~l~~~-----------------------------i~~~~ 54 (434)
T 1wmd_A 8 VKADV-AQSS---YGLYGQGQIVAVADTGLDTGRNDSSMHEAFRGK-----------------------------ITALY 54 (434)
T ss_dssp TTHHH-HHHH---HCCSCTTCEEEEEESCCTTSCSSTTSCTTTTTC-----------------------------EEEEE
T ss_pred hCchh-hhhc---cCCCCcccEEEEEecCcCCCCCCcccCcccCCC-----------------------------Eeeec
Confidence 44443 6652 2689999999999999999 79999853 44455
Q ss_pred EchhhhhhcCCCCCCCCCCCCCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCCC---CHHH
Q 044171 201 YFARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFGG---YMAD 277 (813)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g~---~~~~ 277 (813)
+|.+. ..+.|.+||||||||||+|+.. .+.||||+|+|+.+|+++..+. ..++
T Consensus 55 ~~~~~-------------~~~~d~~gHGT~VAgiiag~g~-----------~~~GvAp~a~l~~~~v~~~~g~~~~~~~~ 110 (434)
T 1wmd_A 55 ALGRT-------------NNANDTNGHGTHVAGSVLGNGS-----------TNKGMAPQANLVFQSIMDSGGGLGGLPSN 110 (434)
T ss_dssp ETTTT-------------TCCCCSSSHHHHHHHHHHCCSS-----------SSCCSSTTSEEEEEECCCTTSSCTTSCSS
T ss_pred cccCC-------------CCCCCCCCcHHHHHHHHHcCCC-----------CceeeCCCCEEEEEEeecCCCccccccHH
Confidence 55432 3456889999999999999632 2579999999999999987652 4568
Q ss_pred HHHHHHHHHhCCCcEEEEccCCCCCCCCChhhhhHHHHHHHHH-HhCCcEEEEecCCCCCCC--CCCCCCCCceEEEeec
Q 044171 278 VVAAVDQAVEDGVDIISLSVGPSAVPSGPAAFLNALEMELLFA-TKAGVLVVQAAGNSGPSS--SSILSFSPWITSIAAS 354 (813)
Q Consensus 278 i~~ai~~a~~~g~~VIn~S~G~~~~~~~~~~~~~~~~~a~~~a-~~~Gi~vV~AAGN~g~~~--~~~~~~~~~vitVgA~ 354 (813)
+.++|++|+++|++|||||||..... .+ .....+++++ .++|++||+||||+|... ...|+.++++|+|||+
T Consensus 111 ~~~ai~~a~~~g~~Vin~S~G~~~~~-~~----~~~~~~id~~~~~~gvlvV~AAGN~g~~~~~~~~Pa~~~~vitVga~ 185 (434)
T 1wmd_A 111 LQTLFSQAYSAGARIHTNSWGAAVNG-AY----TTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGAT 185 (434)
T ss_dssp HHHHHHHHHHTTCSEEEECCCBCCTT-CC----CHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEE
T ss_pred HHHHHHHHHhcCCeEEEecCCCCcCC-cC----CHHHHHHHHHHhCCCeEEEEECCCCCCCCcccCCcccCCccEEEecc
Confidence 99999999999999999999976421 11 2233444444 589999999999999764 3567889999999997
Q ss_pred ccCccccceeeecCCcEEEeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCC
Q 044171 355 ITDRKYNNTIKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDF 434 (813)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~ 434 (813)
+..+...
T Consensus 186 ~~~~~~~------------------------------------------------------------------------- 192 (434)
T 1wmd_A 186 ENLRPSF------------------------------------------------------------------------- 192 (434)
T ss_dssp CCSCGGG-------------------------------------------------------------------------
T ss_pred cccCccc-------------------------------------------------------------------------
Confidence 5321100
Q ss_pred CCCchhHHHHHHHHHhcCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeee
Q 044171 435 ENDDATIATVADNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHAR 514 (813)
Q Consensus 435 ~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~ 514 (813)
+.
T Consensus 193 --~~---------------------------------------------------------------------------- 194 (434)
T 1wmd_A 193 --GS---------------------------------------------------------------------------- 194 (434)
T ss_dssp --CG----------------------------------------------------------------------------
T ss_pred --Cc----------------------------------------------------------------------------
Confidence 00
Q ss_pred EEEccCeeeeecCCCCeeeecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCC--CCCCCcceeeeccCCh
Q 044171 515 ARILDGRRAIYHGQAPVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDP--NLKGRNFALLSGTSMA 592 (813)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~--~~~~~~y~~~sGTSMA 592 (813)
+....+.+++||++||+.+ +++||||+|||++|+++.+....... ...++.|..++|||||
T Consensus 195 ----------~~~~~~~~a~fS~~G~~~~-------g~~kpdi~ApG~~i~s~~~~~~~~~~~~~~~~~~~~~~sGTS~A 257 (434)
T 1wmd_A 195 ----------YADNINHVAQFSSRGPTKD-------GRIKPDVMAPGTFILSARSSLAPDSSFWANHDSKYAYMGGTSMA 257 (434)
T ss_dssp ----------GGSCTTSBCTTSCCCCCTT-------SCCCCCEEEECSSEEEECCTTCCGGGSSEEEETTEEEECSHHHH
T ss_pred ----------ccCCCCccccccCCCCCCC-------CCCCceEEcCCCCeEecCCCCCCCcccccCCCCceEeecchhHH
Confidence 0001235899999999986 89999999999999999864221000 0014589999999999
Q ss_pred hhHHHHHHHHHHHhCCCC-----CHHHHHHHHHccccccCCCCCcccccCCCCCccccccccCCCCCccCccccCccCcC
Q 044171 593 TPHIAGVAALIKQRHPKW-----SPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGFINPARAI 667 (813)
Q Consensus 593 aP~VAG~aALl~q~~p~~-----s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaG~vd~~~A~ 667 (813)
||||||++|||+|++|++ ++++||++|++||+++.. ..+++.||||++|+.+|+
T Consensus 258 aP~vaG~aAll~~~~~~~~~~~~s~~~vk~~L~~tA~~~~~---------------------~~~~~~~G~G~vd~~~a~ 316 (434)
T 1wmd_A 258 TPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGL---------------------GYPNGNQGWGRVTLDKSL 316 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCSS---------------------CSSCTTTTTCBCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcCCcccCC---------------------CCCCccCCcCeEeHHHhc
Confidence 999999999999999875 899999999999987531 234568999999999999
Q ss_pred CCC
Q 044171 668 DPG 670 (813)
Q Consensus 668 ~~~ 670 (813)
+..
T Consensus 317 ~~~ 319 (434)
T 1wmd_A 317 NVA 319 (434)
T ss_dssp TCE
T ss_pred ccc
Confidence 754
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-48 Score=421.81 Aligned_cols=298 Identities=26% Similarity=0.389 Sum_probs=217.9
Q ss_pred CCCCCCCCCCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccc-cCCCCCCCCCCCceEEEEEchhhhhhcCC
Q 044171 133 VWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCT-TGNRFPSTACNSKIVGAQYFARAAIAYGD 211 (813)
Q Consensus 133 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~n~ki~g~~~~~~~~~~~~~ 211 (813)
+|+. +++|+||+||||||||+ +||+|.++....++.... .... .+.... ...... .++.+.. ..
T Consensus 24 aw~~----g~~G~gV~VaViDtGi~-~hp~l~~~~~~~~~~~~~--~~~~~d~~~~~----~~~~~~-~~~~~~~---~~ 88 (340)
T 3lpc_A 24 VWDM----GFTGQNVVVAVVDTGIL-HHRDLNANVLPGYDFISN--SQISLDGDGRD----ADPFDE-GDWFDNW---AC 88 (340)
T ss_dssp HHHH----TCSCTTCEEEEEESCBC-CCTTTGGGBCCCEECCCC--HHHHCSSSSSB----SCCBCC-CCCBCTT---TT
T ss_pred HHHh----cCCCCCeEEEEEcCCCC-CChhhhcccccCccccCC--ccccccCCCcc----CCcccc-ccccccc---cc
Confidence 6766 78999999999999998 999999764332211110 0000 000000 000000 0000000 00
Q ss_pred CCCCCCCCCCCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCCCCHHHHHHHHHHHHh----
Q 044171 212 FNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFGGYMADVVAAVDQAVE---- 287 (813)
Q Consensus 212 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g~~~~~i~~ai~~a~~---- 287 (813)
.....+.....|.+||||||||||+|...+. .++.||||+|+|+.+|+++..++..++++++|+|+++
T Consensus 89 ~~~~~~~~~~~d~~gHGT~vAgiia~~~~~~--------~g~~GvAp~a~l~~~~v~~~~~~~~~~~~~ai~~a~~~~~~ 160 (340)
T 3lpc_A 89 GGRPDPRKERSDSSWHGSHVAGTIAAVTNNR--------IGVAGVAYGAKVVPVRALGRCGGYDSDISDGLYWAAGGRIA 160 (340)
T ss_dssp SCTTCGGGSCBCCCCHHHHHHHHHHCCCSSS--------SSCCCTTTTSEEEEEECCBTTBCCHHHHHHHHHHHHTCCCT
T ss_pred cCCCCcccCCCCCCCCHHHHHHHHHccCCCC--------CcceeecCCCEEEEEEEecCCCCcHHHHHHHHHHHhccccc
Confidence 0011112335688999999999999975422 2468999999999999999887888999999999998
Q ss_pred ------CCCcEEEEccCCCCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCC-CCCCCCCceEEEeecccCccc
Q 044171 288 ------DGVDIISLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSS-SILSFSPWITSIAASITDRKY 360 (813)
Q Consensus 288 ------~g~~VIn~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~~~vitVgA~~~~~~~ 360 (813)
.+++|||||||.... ....++.+++++.++|++||+||||+|.... .+|+..+++|+|||++.+
T Consensus 161 ~~~~~~~~~~Vin~S~G~~~~------~~~~~~~~~~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~--- 231 (340)
T 3lpc_A 161 GIPENRNPAKVINMSLGSDGQ------CSYNAQTMIDRATRLGALVVVAAGNENQNASNTWPTSCNNVLSVGATTSR--- 231 (340)
T ss_dssp TSCCCSSCCSEEEECCCEESC------CCHHHHHHHHHHHHHTCEEEEECCSSSSBGGGEETTTSSSCEEEEEECTT---
T ss_pred ccccccCCCeEEEeCcCCCCC------cchhHHHHHHHHHhCCcEEEEeCCCCCCCCCCcCCccCCceEEEecCCCC---
Confidence 899999999997432 2356778888999999999999999987643 467888999999985311
Q ss_pred cceeeecCCcEEEeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchh
Q 044171 361 NNTIKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDAT 440 (813)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~ 440 (813)
T Consensus 232 -------------------------------------------------------------------------------- 231 (340)
T 3lpc_A 232 -------------------------------------------------------------------------------- 231 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhcCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccC
Q 044171 441 IATVADNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDG 520 (813)
Q Consensus 441 ~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 520 (813)
T Consensus 232 -------------------------------------------------------------------------------- 231 (340)
T 3lpc_A 232 -------------------------------------------------------------------------------- 231 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeecCCCCeeeecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHH
Q 044171 521 RRAIYHGQAPVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVA 600 (813)
Q Consensus 521 ~~~~~~~~~~~~s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~a 600 (813)
+.++.||++||.+ ||+|||++|+++++..... ...+.|..++|||||||||||++
T Consensus 232 ---------~~~~~~S~~g~~~-------------di~ApG~~i~s~~~~~~~~---~~~~~~~~~sGTS~AaP~vaG~a 286 (340)
T 3lpc_A 232 ---------GIRASFSNYGVDV-------------DLAAPGQDILSTVDSGTRR---PVSDAYSFMAGTSMATPHVSGVA 286 (340)
T ss_dssp ---------SSBCTTCCBSTTC-------------CEEEECSSEEEEEESCSSS---CCSEEEEEECSHHHHHHHHHHHH
T ss_pred ---------CCcCCCCCCCCCc-------------eEEecCCCeecccCCCCcC---CCCCcceecccHhHHHHHHHHHH
Confidence 2368899999754 9999999999998654321 12346999999999999999999
Q ss_pred HHHHHh-C---CCCCHHHHHHHHHccccccCCCCCcccccCCCCCccccccccCCCCCccCccccCccCcCCC
Q 044171 601 ALIKQR-H---PKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGFINPARAIDP 669 (813)
Q Consensus 601 ALl~q~-~---p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaG~vd~~~A~~~ 669 (813)
|||+|+ + |.+++++||++|++||+++.. .++..||||+||+.+|++.
T Consensus 287 All~~~~~~~~p~lt~~~v~~~L~~tA~~~~~----------------------~~~~~~G~G~vd~~~Av~~ 337 (340)
T 3lpc_A 287 ALVISAANSVNKNLTPAELKDVLVSTTSPFNG----------------------RLDRALGSGIVDAEAAVNS 337 (340)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHTCBCCSS----------------------CCSSCCCSSBCCHHHHHHH
T ss_pred HHHHHhhhhhCCCCCHHHHHHHHHhcCCcCCC----------------------CCCCCcccceecHHHHHHH
Confidence 999998 5 999999999999999987631 1234899999999999864
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-46 Score=398.02 Aligned_cols=233 Identities=32% Similarity=0.488 Sum_probs=199.0
Q ss_pred CCCCCCCCCCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCC
Q 044171 133 VWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDF 212 (813)
Q Consensus 133 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~ 212 (813)
+|.. +++|+||+|||||||||++||+|.++ +..+++|.+.
T Consensus 21 aw~~----~~~G~gv~VaViDtGvd~~h~~l~~~-----------------------------~~~~~~~~~~------- 60 (284)
T 1sh7_A 21 NYNA----NFDGFGVTAYVIDTGVNNNHEEFGGR-----------------------------SVSGYDFVDN------- 60 (284)
T ss_dssp BCCC----SCCCTTCEEEEEESCCCTTCTTTTTC-----------------------------EEEEEETTTT-------
T ss_pred hhhc----CCCCCCCEEEEEcCCCCCCChhHcCC-----------------------------ccccccccCC-------
Confidence 6665 68999999999999999999999863 4455666543
Q ss_pred CCCCCCCCCCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-CCHHHHHHHHHHHHhC--C
Q 044171 213 NSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-GYMADVVAAVDQAVED--G 289 (813)
Q Consensus 213 ~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~--g 289 (813)
...+.|.+||||||||||+|.. .||||+|+|+.+|++++.+ +..+++++||+|++++ +
T Consensus 61 -----~~~~~d~~gHGT~vAgiia~~~--------------~GvAp~a~l~~~kv~~~~g~~~~~~~~~ai~~a~~~~~~ 121 (284)
T 1sh7_A 61 -----DADSSDCNGHGTHVAGTIGGSQ--------------YGVAKNVNIVGVRVLSCSGSGTTSGVISGVDWVAQNASG 121 (284)
T ss_dssp -----BSCCCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHHCCS
T ss_pred -----CCCCCCCCCcHHHHHHHHhccc--------------CCcCCCCEEEEEEeeCCCCCcCHHHHHHHHHHHHhCCCC
Confidence 1245688999999999999872 5999999999999998876 7888999999999984 7
Q ss_pred CcEEEEccCCCCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCC-CCCCCCCCceEEEeecccCccccceeeecC
Q 044171 290 VDIISLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSS-SSILSFSPWITSIAASITDRKYNNTIKLAN 368 (813)
Q Consensus 290 ~~VIn~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~~~vitVgA~~~~~~~~~~~~~~~ 368 (813)
++|||||||... .+.++.+++++.++|++||+||||+|... ...|+..+++|+|||++.+
T Consensus 122 ~~Vin~S~G~~~--------~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~----------- 182 (284)
T 1sh7_A 122 PSVANMSLGGGQ--------STALDSAVQGAIQSGVSFMLAAGNSNADACNTSPARVPSGVTVGSTTSS----------- 182 (284)
T ss_dssp SEEEEECCCBSC--------CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGSBTTTCTTSEEEEEECTT-----------
T ss_pred CcEEEeCCCCCC--------CHHHHHHHHHHHHCCCEEEEECCcCCCCCCccccccCCCeEEEEEecCC-----------
Confidence 999999999752 25788888999999999999999999754 3467888999999985311
Q ss_pred CcEEEeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHH
Q 044171 369 GHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNI 448 (813)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~ 448 (813)
T Consensus 183 -------------------------------------------------------------------------------- 182 (284)
T 1sh7_A 183 -------------------------------------------------------------------------------- 182 (284)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeeeeecCC
Q 044171 449 KKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQ 528 (813)
Q Consensus 449 ~~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 528 (813)
T Consensus 183 -------------------------------------------------------------------------------- 182 (284)
T 1sh7_A 183 -------------------------------------------------------------------------------- 182 (284)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCeeeecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHHHHHHHhCC
Q 044171 529 APVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHP 608 (813)
Q Consensus 529 ~~~~s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p 608 (813)
+.++.||++||.. ||+|||++|+++++ ++.|..++|||||||||||++|||+|++|
T Consensus 183 -~~~~~~S~~G~~~-------------di~ApG~~i~s~~~----------~~~~~~~sGTS~AaP~vaG~aAll~~~~p 238 (284)
T 1sh7_A 183 -DSRSSFSNWGSCV-------------DLFAPGSQIKSAWY----------DGGYKTISGTSMATPHVAGVAALYLQENN 238 (284)
T ss_dssp -SBBCTTCCBSTTC-------------CEEEECSSEEEECT----------TSSEEEECSHHHHHHHHHHHHHHHHHHCT
T ss_pred -CCcCcccCCCCcc-------------EEEeccCCeEEecC----------CCCEEEccChHHHHHHHHHHHHHHHHHCC
Confidence 2368899999875 99999999999974 34899999999999999999999999999
Q ss_pred CCCHHHHHHHHHccccccC
Q 044171 609 KWSPAAITSAMMTSAEVTD 627 (813)
Q Consensus 609 ~~s~~~ik~~L~~TA~~~~ 627 (813)
++++++||++|++||++..
T Consensus 239 ~lt~~~v~~~L~~tA~~~~ 257 (284)
T 1sh7_A 239 GLTPLQLTGLLNSRASENK 257 (284)
T ss_dssp TCCHHHHHHHHHHHSEESC
T ss_pred CCCHHHHHHHHHhhCccCC
Confidence 9999999999999998753
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-46 Score=397.95 Aligned_cols=223 Identities=30% Similarity=0.436 Sum_probs=192.6
Q ss_pred CCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCCCCCCCCCCC
Q 044171 142 FSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYASP 221 (813)
Q Consensus 142 ~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~ 221 (813)
.+|+||+|||||||||++||+|.++ +..+++|. ..+
T Consensus 28 ~~G~gv~VaViDsGvd~~H~~l~~~-----------------------------~~~~~~~~---------------~~~ 63 (279)
T 2pwa_A 28 SAGQGSCVYVIDTGIEASHPEFEGR-----------------------------AQMVKTYY---------------YSS 63 (279)
T ss_dssp TTTTTEEEEEEESCCCTTCGGGTTC-----------------------------EEEEEESS---------------SCS
T ss_pred CCCCCCEEEEEeCCCCCCChhHhCc-----------------------------cccccCCC---------------CCC
Confidence 7999999999999999999999863 33445543 124
Q ss_pred CCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-CCHHHHHHHHHHHHhCCC-------cEE
Q 044171 222 FDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-GYMADVVAAVDQAVEDGV-------DII 293 (813)
Q Consensus 222 ~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~-------~VI 293 (813)
.|.+||||||||||+|. ..||||+|+|+.+|++++.+ +..+++++||+|++++++ +||
T Consensus 64 ~d~~gHGT~vAgiia~~--------------~~GvAp~a~i~~~~v~~~~g~~~~~~~~~ai~~a~~~~~~~~~~~~~Vi 129 (279)
T 2pwa_A 64 RDGNGHGTHCAGTVGSR--------------TYGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGVVA 129 (279)
T ss_dssp SCSSSHHHHHHHHHHCT--------------TTCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEEEE
T ss_pred CCCCCCHHHHHHHHHhc--------------ccccCCCCEEEEEEeEcCCCCcCHHHHHHHHHHHHhcCccccCCCccEE
Confidence 57899999999999986 26999999999999999877 788999999999999887 999
Q ss_pred EEccCCCCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCC-CCCCCCCceEEEeecccCccccceeeecCCcEE
Q 044171 294 SLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSS-SILSFSPWITSIAASITDRKYNNTIKLANGHSF 372 (813)
Q Consensus 294 n~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~ 372 (813)
|||||.. ..+.++.+++++.++|++||+||||+|.... .+|+..+++|+|||++.+
T Consensus 130 n~S~G~~--------~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~--------------- 186 (279)
T 2pwa_A 130 SLSLGGG--------YSSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASDRY--------------- 186 (279)
T ss_dssp EECCCEE--------CCHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT---------------
T ss_pred EecCCCC--------CCHHHHHHHHHHHHCCCEEEEECCCCCCcCCCcCcccCCcEEEEEEecCC---------------
Confidence 9999964 2367888899999999999999999997643 457888999999985311
Q ss_pred EeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcC
Q 044171 373 SGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIE 452 (813)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~G 452 (813)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T 2pwa_A 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeeeeecCCCCee
Q 044171 453 AAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPVV 532 (813)
Q Consensus 453 a~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 532 (813)
+.+
T Consensus 187 -----------------------------------------------------------------------------~~~ 189 (279)
T 2pwa_A 187 -----------------------------------------------------------------------------DRR 189 (279)
T ss_dssp -----------------------------------------------------------------------------SBB
T ss_pred -----------------------------------------------------------------------------CCc
Confidence 236
Q ss_pred eecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHHHHHHHhCCCCCH
Q 044171 533 ASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSP 612 (813)
Q Consensus 533 s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~s~ 612 (813)
+.||++||.+ ||+|||++|+++++ ++.|..++|||||||||||++|||+|+ |++++
T Consensus 190 ~~~S~~G~~~-------------di~APG~~i~s~~~----------~~~~~~~sGTS~AaP~VaG~aAll~~~-p~lt~ 245 (279)
T 2pwa_A 190 SSFSNYGSVL-------------DIFGPGTDILSTWI----------GGSTRSISGTSMATPHVAGLAAYLMTL-GKTTA 245 (279)
T ss_dssp CTTCCBSTTC-------------CEEEECSSEEEEET----------TTEEEEECSHHHHHHHHHHHHHHHHHT-TSCCT
T ss_pred CCcCCCCCcc-------------eEEEecCCeEEeec----------CCCEEEcCChHHHHHHHHHHHHHHHhC-CCCCH
Confidence 8899999865 99999999999984 348999999999999999999999999 99999
Q ss_pred HHHHHHHHcccccc
Q 044171 613 AAITSAMMTSAEVT 626 (813)
Q Consensus 613 ~~ik~~L~~TA~~~ 626 (813)
.+||++|++||++.
T Consensus 246 ~~v~~~L~~tA~~~ 259 (279)
T 2pwa_A 246 ASACRYIADTANKG 259 (279)
T ss_dssp TTHHHHHHHHSEES
T ss_pred HHHHHHHHHhCccc
Confidence 99999999999875
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-46 Score=393.97 Aligned_cols=233 Identities=31% Similarity=0.443 Sum_probs=199.0
Q ss_pred CCCCCCCCCCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCC
Q 044171 133 VWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDF 212 (813)
Q Consensus 133 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~ 212 (813)
+|.. +++|+||+|||||||||++||+|.++ +...++|..
T Consensus 23 a~~~----~~~G~gv~VaViDtGvd~~h~~l~~~-----------------------------~~~~~~~~~-------- 61 (276)
T 4dzt_A 23 SYTY----TATGRGVNVYVIDTGIRTTHREFGGR-----------------------------ARVGYDALG-------- 61 (276)
T ss_dssp CEEC----SCCCTTCEEEEEESCCCTTCGGGTTC-----------------------------EEEEEETTS--------
T ss_pred ceec----CCCCCCcEEEEEccCCCCCChhHccC-----------------------------eeccccCCC--------
Confidence 6665 78999999999999999999999863 344445432
Q ss_pred CCCCCCCCCCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-CCHHHHHHHHHHHHhC--C
Q 044171 213 NSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-GYMADVVAAVDQAVED--G 289 (813)
Q Consensus 213 ~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~--g 289 (813)
..+.|.+||||||||||+|.. .||||+|+|+.+|++++.+ +..++++++++|+++. +
T Consensus 62 ------~~~~d~~gHGT~vAgiiag~~--------------~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~ 121 (276)
T 4dzt_A 62 ------GNGQDCNGHGTHVAGTIGGVT--------------YGVAKAVNLYAVRVLDCNGSGSTSGVIAGVDWVTRNHRR 121 (276)
T ss_dssp ------SCSCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHCCS
T ss_pred ------CCCCCCCCCHHHHHHHHHccc--------------cCCCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHhcCCC
Confidence 234578899999999999872 5999999999999999877 7888999999999997 8
Q ss_pred CcEEEEccCCCCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCCC-CCCCCCceEEEeecccCccccceeeecC
Q 044171 290 VDIISLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSSS-ILSFSPWITSIAASITDRKYNNTIKLAN 368 (813)
Q Consensus 290 ~~VIn~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~-~~~~~~~vitVgA~~~~~~~~~~~~~~~ 368 (813)
++|||||||... .+.++.+++++.++|+++|+||||+|..... .|+..+++|+|||++.+
T Consensus 122 ~~vin~S~g~~~--------~~~~~~a~~~a~~~gvlvv~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~----------- 182 (276)
T 4dzt_A 122 PAVANMSLGGGV--------STALDNAVKNSIAAGVVYAVAAGNDNANACNYSPARVAEALTVGATTSS----------- 182 (276)
T ss_dssp SEEEEECCCEEC--------CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT-----------
T ss_pred CeEEEECCCCCC--------CHHHHHHHHHHHhCCCEEEEECCCCCCCCCCcCcccCCCEEEEEEECCC-----------
Confidence 999999999642 3678889999999999999999999976543 37888999999984311
Q ss_pred CcEEEeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHH
Q 044171 369 GHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNI 448 (813)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~ 448 (813)
T Consensus 183 -------------------------------------------------------------------------------- 182 (276)
T 4dzt_A 183 -------------------------------------------------------------------------------- 182 (276)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeeeeecCC
Q 044171 449 KKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQ 528 (813)
Q Consensus 449 ~~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 528 (813)
T Consensus 183 -------------------------------------------------------------------------------- 182 (276)
T 4dzt_A 183 -------------------------------------------------------------------------------- 182 (276)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCeeeecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHHHHHHHhCC
Q 044171 529 APVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHP 608 (813)
Q Consensus 529 ~~~~s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p 608 (813)
+.++.||++||.. ||+|||++|++++... +..|..++|||||||||||++|||+|++|
T Consensus 183 -~~~~~~S~~g~~~-------------dv~ApG~~i~s~~~~~--------~~~~~~~sGTS~AaP~vaG~aAll~~~~p 240 (276)
T 4dzt_A 183 -DARASFSNYGSCV-------------DLFAPGASIPSAWYTS--------DTATQTLNGTSMATPHVAGVAALYLEQNP 240 (276)
T ss_dssp -SBBCTTCCBSTTC-------------CEEEECSSEEEECTTS--------SSCEEEECSHHHHHHHHHHHHHHHHHHCT
T ss_pred -CCcCCcCCCCCCc-------------eEEeCCCCeEccccCC--------CCceEEeeEHHHHHHHHHHHHHHHHHHCC
Confidence 2368899999976 8999999999998642 34799999999999999999999999999
Q ss_pred CCCHHHHHHHHHccccccC
Q 044171 609 KWSPAAITSAMMTSAEVTD 627 (813)
Q Consensus 609 ~~s~~~ik~~L~~TA~~~~ 627 (813)
++++++||++|++||++..
T Consensus 241 ~lt~~~v~~~L~~tA~~~~ 259 (276)
T 4dzt_A 241 SATPASVASAILNGATTGR 259 (276)
T ss_dssp TCCHHHHHHHHHHHSEESC
T ss_pred CCCHHHHHHHHHhhCcCCc
Confidence 9999999999999999864
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-46 Score=393.24 Aligned_cols=234 Identities=31% Similarity=0.456 Sum_probs=198.4
Q ss_pred CCCCCCCCCCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCC
Q 044171 133 VWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDF 212 (813)
Q Consensus 133 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~ 212 (813)
+|.. +++|+||+|||||||||++||+|.++ +..+++|.++
T Consensus 23 ~~~~----~~~G~gv~VaViDtGid~~Hpdl~~~-----------------------------~~~~~d~~~~------- 62 (278)
T 2b6n_A 23 NYHT----DYDGSGVTAFVIDTGVLNTHNEFGGR-----------------------------ASSGYDFIDN------- 62 (278)
T ss_dssp EEEC----SCCCTTCEEEEEESCCCTTCGGGTTC-----------------------------EEEEEETTTT-------
T ss_pred hccc----CCCCCCCEEEEEeCCCCCCChhHhcc-----------------------------cccCeecCCC-------
Confidence 5665 68999999999999999999999863 3445566542
Q ss_pred CCCCCCCCCCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-CCHHHHHHHHHHHHh--CC
Q 044171 213 NSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-GYMADVVAAVDQAVE--DG 289 (813)
Q Consensus 213 ~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~--~g 289 (813)
...+.|.+||||||||||+|.. .||||+|+|+.+|++++.+ +..+++++||+|+++ .+
T Consensus 63 -----~~~~~d~~gHGT~vAgiia~~~--------------~GvAp~a~i~~~~v~~~~g~~~~~~~~~ai~~a~~~~~g 123 (278)
T 2b6n_A 63 -----DYDATDCNGHGTHVAGTIGGST--------------YGVAKNVNVVGVRVLNCSGSGSNSGVIAGINWVKNNASG 123 (278)
T ss_dssp -----BSCCCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHCCS
T ss_pred -----CCCCCCCCCcHHHHHHHHHCCC--------------cCCCCCCeEEEEEEECCCCCccHHHHHHHHHHHHhCCCC
Confidence 1345688999999999999862 5999999999999999876 788899999999998 59
Q ss_pred CcEEEEccCCCCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCC-CCCCCCCceEEEeecccCccccceeeecC
Q 044171 290 VDIISLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSS-SILSFSPWITSIAASITDRKYNNTIKLAN 368 (813)
Q Consensus 290 ~~VIn~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~~~vitVgA~~~~~~~~~~~~~~~ 368 (813)
++|||||||... .+.++.+++++.++|++||+||||+|.... ..|+..+++|+|||++.+
T Consensus 124 ~~Vin~S~G~~~--------~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~----------- 184 (278)
T 2b6n_A 124 PAVANMSLGGGA--------SQATDDAVNAAVAAGITFVVAAGNDNSNACNYSPARAADAITVGSTTSN----------- 184 (278)
T ss_dssp SEEEEECCCEEC--------CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT-----------
T ss_pred CeEEEECCCCCc--------CHHHHHHHHHHHHCCCEEEEEeCCCCCCCCCcCcccCCCeEEEEeeCCC-----------
Confidence 999999999743 256788888999999999999999997643 357788999999985311
Q ss_pred CcEEEeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHH
Q 044171 369 GHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNI 448 (813)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~ 448 (813)
T Consensus 185 -------------------------------------------------------------------------------- 184 (278)
T 2b6n_A 185 -------------------------------------------------------------------------------- 184 (278)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeeeeecCC
Q 044171 449 KKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQ 528 (813)
Q Consensus 449 ~~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 528 (813)
T Consensus 185 -------------------------------------------------------------------------------- 184 (278)
T 2b6n_A 185 -------------------------------------------------------------------------------- 184 (278)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCeeeecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHHHHHHHhCC
Q 044171 529 APVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHP 608 (813)
Q Consensus 529 ~~~~s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p 608 (813)
+.++.||++||.. ||+|||++|++++... ++.|..++|||||||||||++|||+|++|
T Consensus 185 -~~~~~~S~~G~~~-------------di~ApG~~i~s~~~~~--------~~~~~~~sGTS~AaP~vaG~aAll~~~~p 242 (278)
T 2b6n_A 185 -DSRSSFSNYGTCL-------------DIYAPGSSITSSWYTS--------NSATNTISGTSMASPHVAGVAALYLDENP 242 (278)
T ss_dssp -SBBCTTCCBSTTC-------------CEEEECSSEEEECTTS--------TTCEEEECSHHHHHHHHHHHHHHHHHHCT
T ss_pred -CCcCCcCCCCCCC-------------eEEeCCCCeECcccCC--------CCCEEEeCcHHHHHHHHHHHHHHHHHhCC
Confidence 2367899999865 9999999999998542 34899999999999999999999999999
Q ss_pred CCCHHHHHHHHHcccccc
Q 044171 609 KWSPAAITSAMMTSAEVT 626 (813)
Q Consensus 609 ~~s~~~ik~~L~~TA~~~ 626 (813)
++++++||++|++||++.
T Consensus 243 ~lt~~~v~~~L~~tA~~~ 260 (278)
T 2b6n_A 243 NLSPAQVTNLLKTRATAD 260 (278)
T ss_dssp TCCHHHHHHHHHHHSEES
T ss_pred CCCHHHHHHHHHHhCccC
Confidence 999999999999999864
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-45 Score=420.90 Aligned_cols=296 Identities=19% Similarity=0.224 Sum_probs=212.2
Q ss_pred cCCCCCCCCCCCCCCCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhh
Q 044171 127 LGIPVGVWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAA 206 (813)
Q Consensus 127 ~~~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~ 206 (813)
++++. +|.. +++|+||+|||||||||++||+|.++... ...++|.+.
T Consensus 25 i~~~~-aw~~----g~~G~gv~VaViDtGvd~~Hpdl~~~~~~---------------------------~~~~d~~~~- 71 (471)
T 1p8j_A 25 LNVKE-AWAQ----GFTGHGIVVSILDDGIEKNHPDLAGNYDP---------------------------GASFDVNDQ- 71 (471)
T ss_dssp CCCHH-HHHT----TCSCTTCEEEEEEBCCCTTCTTTGGGBCG---------------------------GGCEETTTT-
T ss_pred CChHH-HHhc----CCCCCCCEEEEEeCCcCCCChhHhhccCc---------------------------cCcccccCC-
Confidence 34333 6665 78999999999999999999999975311 012333322
Q ss_pred hhcCCCCCCCCCCCCCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCCCCHHHHHHHHHHHH
Q 044171 207 IAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFGGYMADVVAAVDQAV 286 (813)
Q Consensus 207 ~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g~~~~~i~~ai~~a~ 286 (813)
.+...+...+.|.++|||||||||+|..+++ ..+.||||+|+|+.+|+++ +..+++++|+++++
T Consensus 72 -----~~~p~~~~~~~d~~gHGT~vAGiiaa~~~n~--------~g~~GvAp~a~i~~~rv~~---g~~~~~~~ai~~a~ 135 (471)
T 1p8j_A 72 -----DPDPQPRYTQMNDNRHGTRCAGEVAAVANNG--------VCGVGVAYNARIGGVRMLD---GEVTDAVEARSLGL 135 (471)
T ss_dssp -----BSCCCCCCCTTCTTCHHHHHHHHHHCCSSSS--------SSCCCTTTTSEEEEEECSS---SCCCHHHHHHHHTS
T ss_pred -----CCCCCCccCCCCCCCcHHHHHHHHHeeccCC--------CCCEEECCCCeEEEEEccC---CchhHHHHHHHhhh
Confidence 0011111235688999999999999975322 2358999999999999986 45678999999999
Q ss_pred h-CCCcEEEEccCCCCCCC---C-ChhhhhHHHHHHHHHH-hCCcEEEEecCCCCCCCCC----CCCCCCceEEEeeccc
Q 044171 287 E-DGVDIISLSVGPSAVPS---G-PAAFLNALEMELLFAT-KAGVLVVQAAGNSGPSSSS----ILSFSPWITSIAASIT 356 (813)
Q Consensus 287 ~-~g~~VIn~S~G~~~~~~---~-~~~~~~~~~~a~~~a~-~~Gi~vV~AAGN~g~~~~~----~~~~~~~vitVgA~~~ 356 (813)
+ ++++|||||||...... + .....+.+..++.+++ .+|++||+||||+|..... ....++++|+|||++.
T Consensus 136 ~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vItVgA~~~ 215 (471)
T 1p8j_A 136 NPNHIHIYSASWGPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQ 215 (471)
T ss_dssp CTTTCCEEEECCBSCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEECT
T ss_pred ccCCCeEEEeccCcCCCCCcccCcHHHHHHHHHHHHHhhccCCCeEEEEeCCCCCCCCCCcCcCcccCCCceEEEecccC
Confidence 9 99999999999754211 1 1222333444443332 4799999999999975321 1234588999998531
Q ss_pred CccccceeeecCCcEEEeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCC
Q 044171 357 DRKYNNTIKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFEN 436 (813)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~ 436 (813)
+
T Consensus 216 ~------------------------------------------------------------------------------- 216 (471)
T 1p8j_A 216 F------------------------------------------------------------------------------- 216 (471)
T ss_dssp T-------------------------------------------------------------------------------
T ss_pred C-------------------------------------------------------------------------------
Confidence 1
Q ss_pred CchhHHHHHHHHHhcCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEE
Q 044171 437 DDATIATVADNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARAR 516 (813)
Q Consensus 437 g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~ 516 (813)
T Consensus 217 -------------------------------------------------------------------------------- 216 (471)
T 1p8j_A 217 -------------------------------------------------------------------------------- 216 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EccCeeeeecCCCCeeeecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHH
Q 044171 517 ILDGRRAIYHGQAPVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHI 596 (813)
Q Consensus 517 ~~~~~~~~~~~~~~~~s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~V 596 (813)
+.++.||++||... ...+|...+||.+|+++... ++.|..++|||||||||
T Consensus 217 -------------g~~a~~S~~g~~~~-------~~~~~~~~~~g~~i~st~~~---------~~~~~~~sGTS~AaP~V 267 (471)
T 1p8j_A 217 -------------GNVPWYSEACSSTL-------ATTYSSGNQNEKQIVTTDLR---------QKCTESHTGTSASAPLA 267 (471)
T ss_dssp -------------SCCCTTCCBCTTCC-------EEEECCCSTTSCCEEEEETT---------TEEEEEECSHHHHHHHH
T ss_pred -------------CCcccccCCCCcce-------EEeCCCCCCCCCCEEEeeCC---------CCccccCCCcccccchh
Confidence 23678999999875 24566667778899999742 34799999999999999
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHccccccCCCCCcccccCCCCCccccccccCCCCCccCccccCccCcCCC
Q 044171 597 AGVAALIKQRHPKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGFINPARAIDP 669 (813)
Q Consensus 597 AG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaG~vd~~~A~~~ 669 (813)
||++|||+|++|+|++++||++|++||++++......... ......+..||||+||+.+|++.
T Consensus 268 AG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~~~~~~~n----------~~g~~~~~~~G~G~vda~~Av~~ 330 (471)
T 1p8j_A 268 AGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATN----------GVGRKVSHSYGYGLLDAGAMVAL 330 (471)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHCBCTTCCCSCCEEC----------TTSCEEBTTTBTCBCCHHHHHHH
T ss_pred hhHHHHHHhhCCCCCHHHHHHHHHhcCccCCCCCCCceec----------CCCcccCCCCCCEEEcHhHHHHH
Confidence 9999999999999999999999999999875432111000 00112345899999999999964
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-45 Score=409.67 Aligned_cols=282 Identities=21% Similarity=0.253 Sum_probs=203.2
Q ss_pred CCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCCCCCCCCCC
Q 044171 141 EFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYAS 220 (813)
Q Consensus 141 ~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~ 220 (813)
+++|+||+|||||||||++||+|.++.. ...+++..+ .+.......
T Consensus 22 ~~tG~GV~VaVIDTGId~~HpdL~gr~~----------------------------~~~~~~v~~------~dg~~f~~~ 67 (546)
T 2qtw_B 22 PDGGSLVEVYLLDTSIQSDHREIEGRVM----------------------------VTDFENVPE------EDGTRFHRQ 67 (546)
T ss_dssp --CCTTSEEEEEESCCCTTSTTTTTTEE----------------------------EEEEECCCC------CC-------
T ss_pred CCCCCCcEEEEECCCCCCCChHHccccc----------------------------ccCcccccC------CCCccccCC
Confidence 6899999999999999999999997521 111111100 000000123
Q ss_pred CCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-CCHHHHHHHHHHHHhC------CCcEE
Q 044171 221 PFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-GYMADVVAAVDQAVED------GVDII 293 (813)
Q Consensus 221 ~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~------g~~VI 293 (813)
+.|.+||||||||||+|.. .||||+|+|+.+|++++.+ ++.+++++||+|+++. +++||
T Consensus 68 ~~D~~GHGThVAGIIag~~--------------~GVAP~A~L~~vkVl~~~G~g~~s~ii~ai~~a~~~~~~~~~g~~VI 133 (546)
T 2qtw_B 68 ASKCDSHGTHLAGVVSGRD--------------AGVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVV 133 (546)
T ss_dssp CTTTTHHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSEEEHHHHHHHHHHHHHHHHHSCCSCEEE
T ss_pred CCCCCChHHHHHHHHhccC--------------CCcCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHhhhhccCCCeEE
Confidence 4678999999999999873 5999999999999999877 7888999999999984 89999
Q ss_pred EEccCCCCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCC-CCCCCCCCceEEEeecccCccccceeeecCCcEE
Q 044171 294 SLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSS-SSILSFSPWITSIAASITDRKYNNTIKLANGHSF 372 (813)
Q Consensus 294 n~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~ 372 (813)
|||||+. +.+.++.+++++.++|++||+||||+|.+. ..+|+..+++|+|||++.+....
T Consensus 134 NmSlGg~--------~s~~l~~Ai~~A~~~GvlvVaAAGN~g~d~~~~sPAs~~~VItVGA~d~~g~~a----------- 194 (546)
T 2qtw_B 134 LLPLAGG--------YSRVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQDQPV----------- 194 (546)
T ss_dssp EECEEEE--------CCHHHHHHHHHHHHTTCEEEEECCSBSSBGGGEETTTCTTSEEEEEECTTSCBC-----------
T ss_pred EecCCCC--------CcHHHHHHHHHHHhCCCEEEEECCCCCCCCCccCcccCCCEEEEEEecCCCCcc-----------
Confidence 9999963 236788899999999999999999999764 34578899999999964221000
Q ss_pred EeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcC
Q 044171 373 SGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIE 452 (813)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~G 452 (813)
T Consensus 195 -------------------------------------------------------------------------------- 194 (546)
T 2qtw_B 195 -------------------------------------------------------------------------------- 194 (546)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeeeeecCCCCee
Q 044171 453 AAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPVV 532 (813)
Q Consensus 453 a~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 532 (813)
..-
T Consensus 195 -----------------------------------------------------------------------------~~s 197 (546)
T 2qtw_B 195 -----------------------------------------------------------------------------TLG 197 (546)
T ss_dssp -----------------------------------------------------------------------------EET
T ss_pred -----------------------------------------------------------------------------ccc
Confidence 000
Q ss_pred eecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHHHHHHHhCCCCCH
Q 044171 533 ASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSP 612 (813)
Q Consensus 533 s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~s~ 612 (813)
+.||++|+.+ ||+|||++|+|+++.. +..|..++|||||||||||++|||+|++|++++
T Consensus 198 ~~fSn~G~~v-------------DI~APG~~I~St~~~~--------~~~y~~~SGTSmAAP~VAG~aALlls~~P~ltp 256 (546)
T 2qtw_B 198 TLGTNFGRCV-------------DLFAPGEDIIGASSDC--------STCFVSQSGTSQAAAHVAGIAAMMLSAEPELTL 256 (546)
T ss_dssp TEECCBSTTC-------------CEEEECSSEEEECTTS--------TTCEEEECSHHHHHHHHHHHHHHHHHHSTTCCH
T ss_pred CCcCCCCCcc-------------eEEecCccEEeeccCC--------CCcEeeeCcCcHHHHHHHHHHHHHHHHCCCCCH
Confidence 1278888754 9999999999998642 247999999999999999999999999999999
Q ss_pred HHHHHHHHccccccCCCCCcccccCCCCCccccccccCCCCCccCccc--cCccCcCC
Q 044171 613 AAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGF--INPARAID 668 (813)
Q Consensus 613 ~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaG~--vd~~~A~~ 668 (813)
++||++|++||.+.......+........|+.- ...+.....+|+|+ .+++.+..
T Consensus 257 ~qVr~~L~~tAt~~~i~~~~~p~~~~~~tpN~l-~~~~~~~~~~G~~l~~~~~w~a~s 313 (546)
T 2qtw_B 257 AELRQRLIHFSAKDVINEAWFPEDQRVLTPNLV-AALPPSTHGAGWQLFCRTVWSAHS 313 (546)
T ss_dssp HHHHHHHHHTSEESCSCGGGSCHHHHTTSCCEE-CCCCCTTCC--CCCEEEEEECCCC
T ss_pred HHHHHHHHHhccccccCCccCccccCCCCccch-hccCCcccccCCCcchhchhccCC
Confidence 999999999997643211100000000011100 01122456789999 88888875
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} SCOP: c.41.1.1 PDB: 3f7o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-45 Score=385.63 Aligned_cols=224 Identities=31% Similarity=0.465 Sum_probs=191.7
Q ss_pred CCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCCCCCCCCCCC
Q 044171 142 FSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYASP 221 (813)
Q Consensus 142 ~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~ 221 (813)
.+|+||+|||||||||++||+|.++ +...++|..+ .
T Consensus 29 ~~G~gv~VaViDtGvd~~h~~l~~~-----------------------------~~~~~~~~~~---------------~ 64 (279)
T 3f7m_A 29 SAGAGACVYVIDTGVEDTHPDFEGR-----------------------------AKQIKSYAST---------------A 64 (279)
T ss_dssp TTTTTEEEEEEESCCCTTCGGGTTC-----------------------------EEEEEECSSS---------------S
T ss_pred CCCCCCEEEEEcCCCCCCChhhccc-----------------------------cccccCCCCC---------------C
Confidence 5999999999999999999999864 3344444321 2
Q ss_pred CCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-CCHHHHHHHHHHHHhCC-------CcEE
Q 044171 222 FDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-GYMADVVAAVDQAVEDG-------VDII 293 (813)
Q Consensus 222 ~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g-------~~VI 293 (813)
.|.+||||||||||+|+ ..||||+|+|+.+|+++..+ +..++++++|+|+++++ ++||
T Consensus 65 ~d~~gHGT~vAgii~~~--------------~~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~~~Vi 130 (279)
T 3f7m_A 65 RDGHGHGTHCAGTIGSK--------------TWGVAKKVSIFGVKVLDDSGSGSLSNIIAGMDFVASDRQSRNCPRRTVA 130 (279)
T ss_dssp SCSSSHHHHHHHHHHCT--------------TTCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEEEE
T ss_pred CCCCCcHHHHHHHHhcC--------------ccccCCCCEEEEEEeeCCCCCcCHHHHHHHHHHHHhccccccCCCCeEE
Confidence 27889999999999986 26999999999999998876 78899999999999976 8999
Q ss_pred EEccCCCCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCCC-CCCCCCceEEEeecccCccccceeeecCCcEE
Q 044171 294 SLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSSS-ILSFSPWITSIAASITDRKYNNTIKLANGHSF 372 (813)
Q Consensus 294 n~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~-~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~ 372 (813)
|||||.. +.+.++.+++.+.++|++||+||||+|..... .|+..+++|+|||++.+
T Consensus 131 n~S~g~~--------~~~~~~~a~~~a~~~gv~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~--------------- 187 (279)
T 3f7m_A 131 SMSLGGG--------YSAALNQAAARLQSSGVFVAVAAGNDNRDAANTSPASEPTVCTVGATDSN--------------- 187 (279)
T ss_dssp EECCCEE--------CCHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT---------------
T ss_pred EeCCCcC--------ccHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCcCCCCCCCEEEEeecCCC---------------
Confidence 9999964 33678889999999999999999999976543 47788999999985311
Q ss_pred EeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcC
Q 044171 373 SGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIE 452 (813)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~G 452 (813)
T Consensus 188 -------------------------------------------------------------------------------- 187 (279)
T 3f7m_A 188 -------------------------------------------------------------------------------- 187 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeeeeecCCCCee
Q 044171 453 AAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPVV 532 (813)
Q Consensus 453 a~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 532 (813)
+.+
T Consensus 188 -----------------------------------------------------------------------------~~~ 190 (279)
T 3f7m_A 188 -----------------------------------------------------------------------------DVR 190 (279)
T ss_dssp -----------------------------------------------------------------------------SBB
T ss_pred -----------------------------------------------------------------------------CCC
Confidence 236
Q ss_pred eecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHHHHHHHhCCCCCH
Q 044171 533 ASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSP 612 (813)
Q Consensus 533 s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~s~ 612 (813)
+.||++||.. ||+|||++|+++++ ++.|..++|||||||||||++|||+|++|+ ++
T Consensus 191 ~~~S~~g~~~-------------di~ApG~~i~s~~~----------~~~~~~~sGTS~AaP~vaG~aAll~~~~p~-t~ 246 (279)
T 3f7m_A 191 STFSNYGRVV-------------DIFAPGTSITSTWI----------GGRTNTISGTSMATPHIAGLAAYLFGLEGG-SA 246 (279)
T ss_dssp CTTCCBSTTC-------------CEEEECSSEEEECG----------GGCEEEECSHHHHHHHHHHHHHHHHHHTCC-CT
T ss_pred CCCCCCCCCC-------------eEEECCCCeEeecC----------CCCEEEeeEHHHHHHHHHHHHHHHHHhCCC-CH
Confidence 8899999865 99999999999984 457999999999999999999999999999 99
Q ss_pred HHHHHHHHccccccC
Q 044171 613 AAITSAMMTSAEVTD 627 (813)
Q Consensus 613 ~~ik~~L~~TA~~~~ 627 (813)
++||++|++||++..
T Consensus 247 ~~v~~~L~~tA~~~~ 261 (279)
T 3f7m_A 247 GAMCGRIQTLSTKNV 261 (279)
T ss_dssp TTHHHHHHHHSEESC
T ss_pred HHHHHHHHHhccccc
Confidence 999999999998753
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-44 Score=412.75 Aligned_cols=284 Identities=23% Similarity=0.261 Sum_probs=207.7
Q ss_pred CCCCCCCCCCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCC
Q 044171 133 VWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDF 212 (813)
Q Consensus 133 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~ 212 (813)
+|.. +++|+||+|||||||||++||+|.++... .+.++|.++
T Consensus 46 aw~~----g~tG~gv~VaViDtGvd~~Hpdl~~~~~~---------------------------~~~~d~~~~------- 87 (503)
T 2id4_A 46 LWYN----NITGAGVVAAIVDDGLDYENEDLKDNFCA---------------------------EGSWDFNDN------- 87 (503)
T ss_dssp HHHT----TCSCTTCEEEEEESCCCTTSTTTTTTBCG---------------------------GGCEETTTT-------
T ss_pred HHhc----CCCCCCeEEEEEeCCCCCCChhHhhcccc---------------------------cCcccCCCC-------
Confidence 5655 78999999999999999999999976321 012344332
Q ss_pred CCCCCCCCCCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCCCCHHHHHHHHHHHHhCCCcE
Q 044171 213 NSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFGGYMADVVAAVDQAVEDGVDI 292 (813)
Q Consensus 213 ~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~~V 292 (813)
..+.....|.+||||||||||+|..+++ ..+.||||+|+|+.+|+++.. +...++++||+|+++++ +|
T Consensus 88 --~~~~~p~~d~~gHGT~vAGiiaa~~~n~--------~~~~GvAp~a~i~~~rv~~~~-~~~~~~~~ai~~a~~~~-~I 155 (503)
T 2id4_A 88 --TNLPKPRLSDDYHGTRCAGEIAAKKGNN--------FCGVGVGYNAKISGIRILSGD-ITTEDEAASLIYGLDVN-DI 155 (503)
T ss_dssp --BSCCCCCSTTTTHHHHHHHHHHCCSSSS--------SSCCCTTTTSEEEEEECTTSC-CCHHHHHHHTTTTTTTC-SE
T ss_pred --CCCCCCCCCCCChHHHHHHHHHhccCCC--------CCcEEECCCCEEEEEEeeCCC-CChHHHHHHHHhHhhcC-CE
Confidence 0111223578899999999999975322 235799999999999999743 67788999999999988 99
Q ss_pred EEEccCCCCCCCCChhhhhHHHHHHHHHH-----hCCcEEEEecCCCCCCCC--CCC--CCCCceEEEeecccCccccce
Q 044171 293 ISLSVGPSAVPSGPAAFLNALEMELLFAT-----KAGVLVVQAAGNSGPSSS--SIL--SFSPWITSIAASITDRKYNNT 363 (813)
Q Consensus 293 In~S~G~~~~~~~~~~~~~~~~~a~~~a~-----~~Gi~vV~AAGN~g~~~~--~~~--~~~~~vitVgA~~~~~~~~~~ 363 (813)
||||||..............+..++.++. .+|++||+||||+|.... .++ ..++++|+|||++.+
T Consensus 156 in~S~G~~~~~~~~~~~~~~~~~a~~~a~~~~r~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vI~VgA~~~~------ 229 (503)
T 2id4_A 156 YSCSWGPADDGRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDHK------ 229 (503)
T ss_dssp EEECEESCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEECTT------
T ss_pred EEeCCCcCCCCccccCchHHHHHHHHHHHHhcccCCCcEEEEecCCCCCcCCCCCCCcccCCCCEEEEEeeCCC------
Confidence 99999975421111112234555555554 489999999999997532 222 246789999985311
Q ss_pred eeecCCcEEEeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHH
Q 044171 364 IKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIAT 443 (813)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~ 443 (813)
T Consensus 230 -------------------------------------------------------------------------------- 229 (503)
T 2id4_A 230 -------------------------------------------------------------------------------- 229 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeee
Q 044171 444 VADNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRA 523 (813)
Q Consensus 444 ~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 523 (813)
T Consensus 230 -------------------------------------------------------------------------------- 229 (503)
T 2id4_A 230 -------------------------------------------------------------------------------- 229 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecCCCCeeeecccCCCCcCcccccCCCCCCCceec----CCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHH
Q 044171 524 IYHGQAPVVASYSSRGPDVNNALLQTADVLKPNIMA----PGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGV 599 (813)
Q Consensus 524 ~~~~~~~~~s~FSS~Gp~~~~~~~~~~g~~KPDI~A----PG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~ 599 (813)
+.++.||++||.. |++| ||..|+++.. .++.|..++|||||||||||+
T Consensus 230 ------~~~a~~S~~g~~~-------------~~~a~~~gpG~~I~st~~---------~~~~~~~~sGTS~AaP~VAG~ 281 (503)
T 2id4_A 230 ------DLHPPYSEGCSAV-------------MAVTYSSGSGEYIHSSDI---------NGRCSNSHGGTSAAAPLAAGV 281 (503)
T ss_dssp ------SCCCTTCCCCTTE-------------EEEEECSBTTBCEEEECS---------TTCEEEEECSHHHHHHHHHHH
T ss_pred ------CCcCCcCCCCCcc-------------eEeecCCCCCCceEeecC---------CCCceecCCCccccchhhhHH
Confidence 2367899999987 6766 8999999953 245899999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHccccccCCCCCcccccCCCCCccccccccCCCCCccCccccCccCcCCC
Q 044171 600 AALIKQRHPKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGFINPARAIDP 669 (813)
Q Consensus 600 aALl~q~~p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaG~vd~~~A~~~ 669 (813)
+|||+|++|+|++++||++|++||+++.....+ .+..+ .........||||+||+.+|++.
T Consensus 282 aALl~~~~p~lt~~~v~~~L~~tA~~~~~~~~~----~~~~~-----~~g~~~~~~~G~G~vda~~Av~~ 342 (503)
T 2id4_A 282 YTLLLEANPNLTWRDVQYLSILSAVGLEKNADG----DWRDS-----AMGKKYSHRYGFGKIDAHKLIEM 342 (503)
T ss_dssp HHHHHHHCTTCCHHHHHHHHHHHCBCCTTCGGG----CCEEC-----SSSSEEBTTTBTCBCCHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHhccccCCCCcCC----Cceec-----CCCCccCcccCCcEecHHHHHHH
Confidence 999999999999999999999999987543000 00000 01112345799999999999964
|
| >3hjr_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas sobria} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=400.84 Aligned_cols=150 Identities=21% Similarity=0.261 Sum_probs=106.4
Q ss_pred CCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCCCCCCCCCC
Q 044171 141 EFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYAS 220 (813)
Q Consensus 141 ~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~ 220 (813)
+++|+||+|||||||||++||||.++.... .++|..+ ..+..+
T Consensus 66 g~tG~GV~VaViDtGid~~HpDL~~n~~~~----------------------------~~~~~~~---------~~dp~p 108 (600)
T 3hjr_A 66 GVLGQGVNVAVVDDGLAIAHPDLADNVRPG----------------------------SKNVVTG---------SDDPTP 108 (600)
T ss_dssp TCSCTTCEEEEESSCCCTTCTTTGGGBCSC----------------------------CBCTTTS---------SSCCCC
T ss_pred CCCCCCeEEEEEcCCCCCCChhHhhccccC----------------------------cceeecC---------CCCCCC
Confidence 799999999999999999999999753210 1111111 111122
Q ss_pred CCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-CCHHHHHHHH-HHHHhCCCcEEEEccC
Q 044171 221 PFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-GYMADVVAAV-DQAVEDGVDIISLSVG 298 (813)
Q Consensus 221 ~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-~~~~~i~~ai-~~a~~~g~~VIn~S~G 298 (813)
..|++||||||||||||..+ + ..+.||||+|+|+.+|++++.+ +..++++.|+ +++..++++|||||||
T Consensus 109 ~~~~~gHGThVAGiIAa~~n------~---~g~~GVAp~A~l~~~rvl~~~~~~~~~~~~~a~~~~~~~~~~~I~n~S~G 179 (600)
T 3hjr_A 109 TDPDTAHGTSVSGIIAAVDN------A---IGTKGIAPRAQLQGFNLLDDNSQQLQKDWLYALGDSNASRDNRVFNQSYG 179 (600)
T ss_dssp CSTTCCHHHHHHHHHHCCSS------S---SSCCCSSTTCEEEEECTTSTTCCCCHHHHHHHTTSSHHHHTCSEEEECCC
T ss_pred CCCCCChHHHHHHHHhEeCC------C---CCcEEeCCCCEEEEEEeecCCCCccHHHHHHHhhhhhhhcCCCEEecccC
Confidence 34578999999999998642 1 2357999999999999998876 6777887776 6778889999999999
Q ss_pred CCCCCC--CChhhhhHHHHHHHHH--HhCCcEEEEecCCCCC
Q 044171 299 PSAVPS--GPAAFLNALEMELLFA--TKAGVLVVQAAGNSGP 336 (813)
Q Consensus 299 ~~~~~~--~~~~~~~~~~~a~~~a--~~~Gi~vV~AAGN~g~ 336 (813)
...... ........++.++..+ ..+|+++|+||||.+.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~AaGNg~~ 221 (600)
T 3hjr_A 180 MSVVDPRSANSLDQSQLDRLFEQQTLKAQGAAYIKAAGNGFN 221 (600)
T ss_dssp CCCSSCCCSCSHHHHHHHHHHHHHHHSTTCCEEEEECCSCSS
T ss_pred ccccCCccCCcchhhhHHHHHHHhhhccCCcEEEEeccCccc
Confidence 654321 1122233344444333 3689999999999864
|
| >1t1e_A Kumamolisin; proenzyme, prosubtilase, activation mechanism, sedolisin, serine-carboxyl proteinase, hydrolase; 1.18A {Bacillus SP} SCOP: c.41.1.2 d.58.3.2 PDB: 1t1g_A 1t1i_A 1gt9_1 1gtg_1 1gtj_1* 1gtl_1* 1sio_A* 1sn7_A 1zvj_A 1siu_A 1zvk_A | Back alignment and structure |
|---|
Probab=99.90 E-value=6.4e-25 Score=251.83 Aligned_cols=100 Identities=32% Similarity=0.407 Sum_probs=80.9
Q ss_pred cccccccCccEEEEEEeeCCCCCHHHHHHHHHHHHh---CCCcEEEEccCCCCCCCCChhhhhHHHHHHHHHHhCCcEEE
Q 044171 252 YASGMAPGARIAVYKALYTFGGYMADVVAAVDQAVE---DGVDIISLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVV 328 (813)
Q Consensus 252 ~~~GvAp~A~l~~~kv~~~~g~~~~~i~~ai~~a~~---~g~~VIn~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV 328 (813)
.+.||||+|+|+.+++. ...++++++|+||++ ++++|||||||...... ...+.+.++.++..|..+||+||
T Consensus 273 ~~~gvAp~a~i~~~~~~----~~~~~~~~ai~~av~~~~~~~~VIS~S~G~~e~~~-~~~~~~~~~~~~~~a~~~Gi~vv 347 (552)
T 1t1e_A 273 VAGALAPGAKIAVYFAP----NTDAGFLNAITTAVHDPTHKPSIVSISWGGPEDSW-APASIAAMNRAFLDAAALGVTVL 347 (552)
T ss_dssp HHHHHCTTSEEEEEECC----SSHHHHHHHHHHHHTCTTTCCSEEEECEEEEGGGS-CHHHHHHHHHHHHHHHHTTCEEE
T ss_pred hhhccCCCCeEEEEEcC----CCCchHHHHHHHHHhcccCCCCEEEecccCCcccC-CHHHHHHHHHHHHHHHhCCeEEE
Confidence 46799999999999973 245789999999998 79999999999754211 12345678888899999999999
Q ss_pred EecCCCCCCC--------CCCCCCCCceEEEeeccc
Q 044171 329 QAAGNSGPSS--------SSILSFSPWITSIAASIT 356 (813)
Q Consensus 329 ~AAGN~g~~~--------~~~~~~~~~vitVgA~~~ 356 (813)
+||||+|... ..+|+.+|+|++|||++.
T Consensus 348 ~AsGd~G~~~~~~~~~~~~~~PAs~P~V~aVGat~~ 383 (552)
T 1t1e_A 348 AAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRL 383 (552)
T ss_dssp EECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEE
T ss_pred EecCCCCCCCCCCCCcccccCcccCCCEEEEecccc
Confidence 9999999643 346788999999999764
|
| >1ga6_A Serine-carboxyl proteinase; serine-carboxyl proteinase, hydrolase-hydrolase inhibitor CO; 1.00A {Pseudomonas SP} SCOP: c.41.1.2 PDB: 1ga4_A* 1ga1_A 1kdv_A* 1kdy_A* 1kdz_A* 1ke1_A* 1ke2_A* 1nlu_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=5.1e-22 Score=217.11 Aligned_cols=103 Identities=16% Similarity=0.158 Sum_probs=81.9
Q ss_pred cccccCccEEEEEEeeCCCCCHHHHHHHHHHHHh-CCCcEEEEccCCCCCCCCChhhhhHHHHHHHHHHhCCcEEEEecC
Q 044171 254 SGMAPGARIAVYKALYTFGGYMADVVAAVDQAVE-DGVDIISLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAG 332 (813)
Q Consensus 254 ~GvAp~A~l~~~kv~~~~g~~~~~i~~ai~~a~~-~g~~VIn~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAG 332 (813)
..+||+++++.+++.+..+...++++.+|+||++ ++++|||||||..........+.+.++.+++.|..+||+||+|||
T Consensus 90 g~~aP~a~~~~~~~~~~~~~~~~~~~~ai~~av~~~~~~ViS~S~G~~e~~~~~~~~~~~~~~~~~~a~~~Gitvv~AsG 169 (372)
T 1ga6_A 90 GSAGGAVQQLLFYMADQSASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTLQAEDRIFATAAAQGQTFSVSSG 169 (372)
T ss_dssp HHTTSCEEEEEEEEECTTSSTTHHHHHHHHHHHHHCCCSEEEECCCEEHHHHHHTTHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred hhcCCCCcEEEEEeCCCCCcccHHHHHHHHHHHhcCCCCEEEeCCCCCCCCCchHHHHHHHHHHHHHHHhCCcEEEEEEC
Confidence 4578999999999987655667889999999998 899999999997431100012346788899999999999999999
Q ss_pred CCCCCC-------------CCCCCCCCceEEEeeccc
Q 044171 333 NSGPSS-------------SSILSFSPWITSIAASIT 356 (813)
Q Consensus 333 N~g~~~-------------~~~~~~~~~vitVgA~~~ 356 (813)
|+|... ..+|+.+|+|++||+++.
T Consensus 170 d~G~~~~~~~g~~~~~~~~~~~PAs~P~V~aVGat~~ 206 (372)
T 1ga6_A 170 DEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTL 206 (372)
T ss_dssp SBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEEE
T ss_pred CCCCccccccCccCCccCCcCCCCCCCCeEEEEeeec
Confidence 999653 245688999999999764
|
| >3edy_A Tripeptidyl-peptidase 1; protease, TPP1, sedolisin, batten disease, lincl, zymogen, P exopeptidase, endopeptidase, S53 family, CLN2; HET: NAG; 1.85A {Homo sapiens} PDB: 3ee6_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=3.3e-09 Score=120.78 Aligned_cols=79 Identities=18% Similarity=0.289 Sum_probs=58.1
Q ss_pred HHHHHHHHHH--hCCCcEEEEccCCCCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCC----------CCCCCC
Q 044171 277 DVVAAVDQAV--EDGVDIISLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSS----------SSILSF 344 (813)
Q Consensus 277 ~i~~ai~~a~--~~g~~VIn~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~----------~~~~~~ 344 (813)
.++..+++.. .+-++|||+|||....... ..+.+.++.++..+..+||.|++|+||+|... ...|+.
T Consensus 284 ~~l~~l~~l~~~~~~~~ViS~S~G~~e~~~~-~~y~~~~~~~~~~~~~~Gitv~~ASGD~G~~~~~~~~~~~~~~~~Pas 362 (544)
T 3edy_A 284 PFLQWLMLLSNESALPHVHTVSYGDDEDSLS-SAYIQRVNTELMKAAARGLTLLFASGDSGAGCWSVSGRHQFRPTFPAS 362 (544)
T ss_dssp HHHHHHHHHTTCSSCCSEEEEECCEEGGGSC-HHHHHHHHHHHHHHHHTTCEEEEECCSSTTBCEEETTEEECCCEETTT
T ss_pred cHHHHHHHHhccCCCCcEEEecCCCcccccC-HHHHHHHHHHHHHHHhCCeEEEEecCCCCccccCCCCCccccCCCcCC
Confidence 4454444433 2468999999997643211 33556778888899999999999999999743 246788
Q ss_pred CCceEEEeeccc
Q 044171 345 SPWITSIAASIT 356 (813)
Q Consensus 345 ~~~vitVgA~~~ 356 (813)
+|+|++||+++.
T Consensus 363 ~P~VtaVGgT~l 374 (544)
T 3edy_A 363 SPYVTTVGGTSF 374 (544)
T ss_dssp CTTSEEEEEEEE
T ss_pred CCcEEEEeeeec
Confidence 999999999763
|
| >3cnq_P Subtilisin BPN'; uncleaved, proenzyme, substrate complex, hydrolase, metal- binding, protease, secreted, serine protease, sporulation; 1.71A {Bacillus amyloliquefaciens} PDB: 3bgo_P 3co0_P 1spb_P 1scj_B | Back alignment and structure |
|---|
Probab=98.61 E-value=1.4e-07 Score=79.06 Aligned_cols=74 Identities=11% Similarity=0.142 Sum_probs=55.8
Q ss_pred CCCCcEEEEEeCCCCcchhhhcccccCCchhhhHhhhhhhhhHHHHHHHHhcCCceeeEEEeccceeEEEEEeCHHHHHH
Q 044171 20 PLNAKVFIVLMDEEPVTSLKLERSYDRNETDAIVYKERISGGHDRFLESLLHGHSYTKLYSYTHLLSGFAIHIESEEAVS 99 (813)
Q Consensus 20 ~~~~~~yiV~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 99 (813)
...+++|||.|++....+ . .+..+++ ..+.++.++|.. |+||+++++.+++ +
T Consensus 5 ~~i~~~YIV~~k~~~~~~---------------~-------~~~~~~~----~~g~~i~~~y~~-~~Gfaa~l~~~~~-~ 56 (80)
T 3cnq_P 5 SNGEKKYIVGFKQGFKSC---------------A-------KKEDVIS----EKGGKLQKCFKY-VDAASATLNEKAV-E 56 (80)
T ss_dssp ---CCEEEEEECTTCCSH---------------H-------HHHHHHH----TTTCEEEEECSS-SSEEEEECCHHHH-H
T ss_pred ccCCCCEEEEECCCCChH---------------H-------HHHHHHH----HcCCcceEEEcc-cEEEEEEcCHHHH-H
Confidence 345799999999875421 0 0112222 234678999998 9999999999998 9
Q ss_pred HHhcCcCeeEEEeCccceeccC
Q 044171 100 TLQNAKGVRIIHEDIKMEKLTM 121 (813)
Q Consensus 100 ~L~~~p~V~~v~~~~~~~~~~~ 121 (813)
+|+++|+|.+||+|..++++.+
T Consensus 57 ~L~~~p~V~~Ve~D~~v~~~tt 78 (80)
T 3cnq_P 57 ELKKDPSVAYVEEDKLYRALSA 78 (80)
T ss_dssp HHHTCTTEEEEEECCEEEECCC
T ss_pred HHHhCCCccEEEeCcEEEEeee
Confidence 9999999999999999988654
|
| >2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P | Back alignment and structure |
|---|
Probab=98.56 E-value=1.1e-07 Score=85.30 Aligned_cols=77 Identities=19% Similarity=0.197 Sum_probs=57.3
Q ss_pred CCCcEEEEEeCCCCcchhhhcccccCCchhhhHhhhhhhhhHHHHHHHHhcC--CceeeEEEeccceeEEEEEeCHHHHH
Q 044171 21 LNAKVFIVLMDEEPVTSLKLERSYDRNETDAIVYKERISGGHDRFLESLLHG--HSYTKLYSYTHLLSGFAIHIESEEAV 98 (813)
Q Consensus 21 ~~~~~yiV~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~ 98 (813)
..+++|||+|++..... .+. .|.+++..+... ....+.++|.+.|+||+++++.+++
T Consensus 35 ~ip~~YIV~lk~~~~~~------------~~~--------~h~~~l~s~~~~~~~~~~i~~sY~~~~~GFaa~Lt~~~~- 93 (114)
T 2w2n_P 35 RLPGTYVVVLKEETHLS------------QSE--------RTARRLQAQAARRGYLTKILHVFHGLLPGFLVKMSGDLL- 93 (114)
T ss_dssp EEEEEEEEEECTTCCHH------------HHH--------HHHHHHHHHHHHTTCCCEEEEEECSSSSEEEEECCGGGH-
T ss_pred CCCCcEEEEECCCCCHH------------HHH--------HHHHHHHHHhhhcccCCceEEEecccceEEEEEcCHHHH-
Confidence 35789999999875311 111 233333333221 3467899999999999999999998
Q ss_pred HHHhcCcCeeEEEeCcccee
Q 044171 99 STLQNAKGVRIIHEDIKMEK 118 (813)
Q Consensus 99 ~~L~~~p~V~~v~~~~~~~~ 118 (813)
++|+++|+|.+||+|+.++.
T Consensus 94 ~~L~~~P~V~~VE~D~~v~~ 113 (114)
T 2w2n_P 94 ELALKLPHVDYIEEDSSVFA 113 (114)
T ss_dssp HHHHTSTTEEEEEEEEEEEE
T ss_pred HHHHcCCCccEEEeCceEec
Confidence 99999999999999988764
|
| >2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P | Back alignment and structure |
|---|
Probab=98.36 E-value=6.9e-07 Score=81.00 Aligned_cols=44 Identities=20% Similarity=0.221 Sum_probs=40.3
Q ss_pred ceeeEEEeccceeEEEEEeCHHHHHHHHhcCcCeeEEEeCcccee
Q 044171 74 SYTKLYSYTHLLSGFAIHIESEEAVSTLQNAKGVRIIHEDIKMEK 118 (813)
Q Consensus 74 ~~~~~~~~~~~~~g~~~~~~~~~~~~~L~~~p~V~~v~~~~~~~~ 118 (813)
+..+.++|.+.|+||+++++.+++ +.|+++|+|.+|+++..++.
T Consensus 80 g~~i~~~Y~~~~~GFaa~l~~~~~-~~L~~~p~V~~VE~D~~v~a 123 (124)
T 2qtw_A 80 LTKILHVFHGLLPGFLVKMSGDLL-ELALKLPHVDYIEEDSSVFA 123 (124)
T ss_dssp CCEEEEEECSSSCEEEEECCGGGH-HHHHTSTTEEEEEEEEEEEE
T ss_pred CCceEEEecccceEEEEEcCHHHH-HHHHcCCCCcEEEeCceEec
Confidence 457889999999999999999998 99999999999999988764
|
| >1v5i_B POIA1, IA-1=serine proteinase inhibitor; protease-inhibitor complex, subtilisin, hydrolase-Pro binding complex; 1.50A {Pleurotus ostreatus} SCOP: d.58.3.2 PDB: 1itp_A | Back alignment and structure |
|---|
Probab=98.25 E-value=3.5e-06 Score=69.56 Aligned_cols=71 Identities=18% Similarity=0.168 Sum_probs=51.9
Q ss_pred CcEEEEEeCCCCcchhhhcccccCCchhhhHhhhhhhhhHHHHHHHHhcCCceeeEEEe-ccceeEEEEEeCHHHHHHHH
Q 044171 23 AKVFIVLMDEEPVTSLKLERSYDRNETDAIVYKERISGGHDRFLESLLHGHSYTKLYSY-THLLSGFAIHIESEEAVSTL 101 (813)
Q Consensus 23 ~~~yiV~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~L 101 (813)
.+.|||.||++...+ .++ .+.+++.+. +..+.+.| ..+|+||+++++.+.+ ++|
T Consensus 2 ~~sYIV~lk~~~~~~------------~~~--------~~~~~~~~~----gg~i~~~y~~~~~~Gfa~~~~~~~l-~~l 56 (76)
T 1v5i_B 2 AGKFIVIFKNDVSED------------KIR--------ETKDEVIAE----GGTITNEYNMPGMKGFAGELTPQSL-TKF 56 (76)
T ss_dssp CEEEEEEECTTCCHH------------HHH--------HHHHHHHHH----TCCCCEEEEETTEEEEEEEECHHHH-HHH
T ss_pred CceEEEEECCCCCHH------------HHH--------HHHHHHHhh----CCceEEEEEcCceeEEEEEcCHHHH-HHH
Confidence 378999999875411 111 233333333 23567788 4799999999999988 999
Q ss_pred hcC--cCeeEEEeCcccee
Q 044171 102 QNA--KGVRIIHEDIKMEK 118 (813)
Q Consensus 102 ~~~--p~V~~v~~~~~~~~ 118 (813)
+++ |.|.+||+|..++.
T Consensus 57 ~~~~~p~V~~VE~D~~v~~ 75 (76)
T 1v5i_B 57 QGLQGDLIDSIEEDHVAHA 75 (76)
T ss_dssp HHTBTTTEEEEEECCEEEC
T ss_pred HhcCCCCCcEEcCCcEEeC
Confidence 999 88999999988764
|
| >3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.85 E-value=5.3e-05 Score=73.69 Aligned_cols=87 Identities=15% Similarity=0.121 Sum_probs=62.0
Q ss_pred cccCCCCCCcCcc------cccceEEEEeeccCCCCCc-hhHHHHHHHHHhcCceEEEEEeCCC-CCCCCCccccccCCc
Q 044171 407 LESCQYPELFIPA------LVRGKLIICTYSFDFENDD-ATIATVADNIKKIEAAGFILRMDPD-QDFSPNKFKDMALDV 478 (813)
Q Consensus 407 ~~~c~~~~~~~~~------~~~Gkivl~~~~~~~~~g~-~~~~~~~~~~~~~Ga~g~i~~n~~~-~~~~~~~~~~~~~~i 478 (813)
...|.....+... ..+|||+|++| |. |+|.+|+.+|+++||.++|+||+.. +.............|
T Consensus 83 ~~GC~~~~~~~~~~~~~~~~~~gkIaLV~R------G~~CsF~~Kv~nAq~aGA~avIIyNn~~~g~~~~~m~~~~~~~I 156 (194)
T 3icu_A 83 LNACNPHTNFTVPTVWGSTVQVSWLALIQR------GGGCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHPGAVDI 156 (194)
T ss_dssp TTCCSTTCCBCCCBCTTSSCBCCEEEEEES------CTTCCHHHHHHHHHHTTCSEEEEECCTTCTTCCCCCCCTTCCSS
T ss_pred cCCCCCCccccCCcccccccCCCeEEEEEC------CCCcCHHHHHHHHHHCCCcEEEEEeCCCCCCceeeecCCCCCce
Confidence 4678754433211 25799999998 77 9999999999999999999999852 111111112233569
Q ss_pred ceEEEcccchhHHHHHHHhhcC
Q 044171 479 PGIILNNMQSSMDLLEYYNSHT 500 (813)
Q Consensus 479 p~~~i~~~~~g~~~~~~~~~~~ 500 (813)
|.++| +..+|+.|++++..+.
T Consensus 157 Psv~I-s~~~G~~L~~~L~~G~ 177 (194)
T 3icu_A 157 VAIMI-GNLKGTKILQSIQRGI 177 (194)
T ss_dssp EEEEE-CHHHHHHHHHHHHTTC
T ss_pred eEEEE-CHHHHHHHHHHHHCCC
Confidence 98888 6778999999987653
|
| >2z30_B TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 2z2y_B 3a3p_B 2z56_B 2z58_B 2z57_B 3a3n_B 3a3o_B | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0014 Score=51.93 Aligned_cols=43 Identities=14% Similarity=0.295 Sum_probs=37.5
Q ss_pred ceeeEEEeccceeEEEEEeCHHHHHHHHhcCcCeeEEEeCcccee
Q 044171 74 SYTKLYSYTHLLSGFAIHIESEEAVSTLQNAKGVRIIHEDIKMEK 118 (813)
Q Consensus 74 ~~~~~~~~~~~~~g~~~~~~~~~~~~~L~~~p~V~~v~~~~~~~~ 118 (813)
+.++.++|. .+++++++++.+.+ +.|+++|+|++||+|..++.
T Consensus 22 gG~i~~~~~-~I~a~~~~lp~~~~-~~L~~~p~V~yVE~D~~v~a 64 (65)
T 2z30_B 22 GGHIVYQFK-LIPAVVVDVPANAV-GKLKKMPGVEKVEFDHQAVL 64 (65)
T ss_dssp TCEEEEECS-SSSEEEEEECGGGH-HHHHTSTTEEEEEECCEEEE
T ss_pred CCEEEEEec-CCcEEEEEeCHHHH-HHHhcCCCceEEecCcEEEc
Confidence 467888885 68999999999887 99999999999999987653
|
| >2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0061 Score=54.96 Aligned_cols=76 Identities=14% Similarity=0.202 Sum_probs=59.6
Q ss_pred CccEEEEEEEEecCCCCeeEEEEEeCCCCcEEEEecCeEEEecCcEEEEEEEEEEecCCCCeEEEEEEEEeCCcceEEEe
Q 044171 725 VGSRKVIRRVRNVSSANETYTVTVKEPSGVKVSVSPQVFKIRGLASRELKIVLKATNSTRAYSFGAMVLQGNNNHIIRIP 804 (813)
Q Consensus 725 ~~~~~~~~tv~N~~~~~~ty~~~~~~~~g~~v~~~~~~~~v~~g~~~~~~vt~~~~~~~~~~~~G~i~~~~~~~~~l~~P 804 (813)
+.+.+.++.|+|+|+.+..|++... . -++++|.+.+|+||++..++|+|.+... ..+++.+.+.-+++..+.++
T Consensus 40 ~~~~~~~~~l~N~g~~~~~f~~~~~--~--~F~i~P~~g~L~pg~~~~i~V~F~P~~~--g~~~~~l~v~~~~g~~~~v~ 113 (122)
T 2ys4_A 40 KYSTQKILLVRNIGNKNAVFHIKTC--R--PFSIEPAIGTLNVGESMQLEVEFEPQSV--GDHSGRLIVCYDTGEKVFVS 113 (122)
T ss_dssp SSCEEEEEEEECCSSSCEEEEEECC--T--TEEEESSEEEECTTCEEEEEEEECCSSS--BCCCCBCEEEESSSCEECCE
T ss_pred CCeEEEEEEEEECCCCCEEEEEecC--C--CeEEECCcCEECCCCEEEEEEEEEcCCC--ccEEEEEEEEECCCCEEEEE
Confidence 4667778899999999999987753 2 4778899999999999999999999864 44667777776566666665
Q ss_pred EE
Q 044171 805 IA 806 (813)
Q Consensus 805 ~~ 806 (813)
..
T Consensus 114 L~ 115 (122)
T 2ys4_A 114 LY 115 (122)
T ss_dssp EC
T ss_pred EE
Confidence 53
|
| >2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* | Back alignment and structure |
|---|
Probab=95.48 E-value=0.031 Score=61.91 Aligned_cols=78 Identities=15% Similarity=0.070 Sum_probs=57.7
Q ss_pred CCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHH
Q 044171 413 PELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDL 492 (813)
Q Consensus 413 ~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~ 492 (813)
..++...+++||||++.+ |.|.+.+|+.+|+++||.|+|++++..+...+.........||.+.+ +.++++.|
T Consensus 105 ~~D~~~~dv~GkIvlv~~------g~~~~~~k~~~A~~~GA~gvIi~~~~~~~~~g~~~~~~~~~IP~~~I-s~~~a~~L 177 (421)
T 2ek8_A 105 TADVAGKDLNGKIALIQR------GNISFADKVRNAAKQGAKAVIIYNNTDGKLNGTLGGSDASFVAAVGI-TKQEGDAL 177 (421)
T ss_dssp TTTTTTSCCTTSEEEEEC------CSSCHHHHHHHHHHTTCSEEEEECSSSSCCCCBCSSCCTTCCEEEEE-CHHHHHHH
T ss_pred hhhcCCCCcCceEEEEeC------CCCCHHHHHHHHHHCCCeEEEEEeCCCcccccccCCCCCCCccEEEe-CHHHHHHH
Confidence 345555589999999988 66789999999999999999999986533333221223456888886 56678888
Q ss_pred HHHHh
Q 044171 493 LEYYN 497 (813)
Q Consensus 493 ~~~~~ 497 (813)
+..+.
T Consensus 178 ~~~l~ 182 (421)
T 2ek8_A 178 AANLR 182 (421)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 88773
|
| >2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=94.34 E-value=0.23 Score=44.22 Aligned_cols=54 Identities=19% Similarity=0.145 Sum_probs=45.6
Q ss_pred EEEEEEEEecCCCCeeEEEEEeCCCCcEEEEecCeEEEecCcEEEEEEEEEEecC
Q 044171 728 RKVIRRVRNVSSANETYTVTVKEPSGVKVSVSPQVFKIRGLASRELKIVLKATNS 782 (813)
Q Consensus 728 ~~~~~tv~N~~~~~~ty~~~~~~~~g~~v~~~~~~~~v~~g~~~~~~vt~~~~~~ 782 (813)
-.+++.|.|...++.+|++++...+++++.- +..++|+||+.+++.|.+.++..
T Consensus 33 N~Ytlki~Nkt~~~~~~~l~v~g~~~l~~~g-~~~i~v~~g~~~~~~v~v~~~~~ 86 (118)
T 2r39_A 33 NTYTLKVINKTQQVQEYNLDVKGLNDVSWYG-KQTIQVEPGEVLNLPMSLGADPD 86 (118)
T ss_dssp EEEEEEEEECSSSCEEEEEEEESCSSCEEES-CCEEEECTTCEEEEEEEEEECGG
T ss_pred EEEEEEEEECCCCCEEEEEEEeCCcccEEeC-CCcEEECCCCEEEEEEEEEEChH
Confidence 3567799999999999999998876766543 45799999999999999999775
|
| >2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.53 E-value=0.35 Score=42.26 Aligned_cols=92 Identities=13% Similarity=0.093 Sum_probs=61.7
Q ss_pred CCcEEEecc--CccEEEEEEEEecCCCCeeEEEEEeC-CCCcEEEEecCeEEEecCcEEEEEEEEEEecCCCCeEEEEEE
Q 044171 716 TPSITISNL--VGSRKVIRRVRNVSSANETYTVTVKE-PSGVKVSVSPQVFKIRGLASRELKIVLKATNSTRAYSFGAMV 792 (813)
Q Consensus 716 ~~s~~~~~~--~~~~~~~~tv~N~~~~~~ty~~~~~~-~~g~~v~~~~~~~~v~~g~~~~~~vt~~~~~~~~~~~~G~i~ 792 (813)
...+.++.+ +..++.+++|+|+|+.+..|++.... +.+..++++|.+=+|+||++.+|.|+|.+... +.+.=.|+
T Consensus 14 ~~~ldFG~v~~g~~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i~pg~~~~i~V~f~~~~~--g~f~~~i~ 91 (112)
T 2e6j_A 14 FELLDIGKVFTGSAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGIIEPSGVQAIQISFSSIIL--GNFEEEFL 91 (112)
T ss_dssp CSEEEEEEEESSCCEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEECTTBCCEEEEEECCCCC--EEEEEEEC
T ss_pred cccEecEeEEECCEEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEECCCCEEEEEEEEECCCc--ceEEEEEE
Confidence 344555554 45566778999999999999984211 11235778899999999999999999999753 34445677
Q ss_pred EEeCCc-ceEEEeEEEEE
Q 044171 793 LQGNNN-HIIRIPIAVYV 809 (813)
Q Consensus 793 ~~~~~~-~~l~~P~~~~~ 809 (813)
+.-.+. ..+++-+-..+
T Consensus 92 v~~~g~~~~~~L~i~G~v 109 (112)
T 2e6j_A 92 VNVNGSPEPVKLTIRGCV 109 (112)
T ss_dssp EEESSCSSCCCEEEEEEE
T ss_pred EEECCCCceEEEEEEEEE
Confidence 665432 33444444433
|
| >3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.50 E-value=0.51 Score=43.31 Aligned_cols=86 Identities=8% Similarity=-0.037 Sum_probs=63.8
Q ss_pred CccEEEEEEEEecCCCCeeEEEEEeCC----CCcEEEEecCeEEEecCcEEEEEEEEEEecC-------CCCeEEEEEEE
Q 044171 725 VGSRKVIRRVRNVSSANETYTVTVKEP----SGVKVSVSPQVFKIRGLASRELKIVLKATNS-------TRAYSFGAMVL 793 (813)
Q Consensus 725 ~~~~~~~~tv~N~~~~~~ty~~~~~~~----~g~~v~~~~~~~~v~~g~~~~~~vt~~~~~~-------~~~~~~G~i~~ 793 (813)
...++.+++|+|+|.-+.+|++..... ..--++++|..-+|+||++.++.|++.+... ....++--+++
T Consensus 42 ~~~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L~Pge~~~I~v~~~v~~~~~~~ln~g~~~l~diLvL 121 (140)
T 3qbt_B 42 RQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYVSKDSVTILNSGEDKIEDILVL 121 (140)
T ss_dssp TCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECBCHHHHHHHHHSSSCSCEEEEE
T ss_pred eeeeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCcccccCCCCeeEEEEEEEEccCcccccccchhhhheeEEE
Confidence 355667789999999999999985321 1123667899999999999999999997542 01344567777
Q ss_pred EeCCcceEEEeEEEEEe
Q 044171 794 QGNNNHIIRIPIAVYVS 810 (813)
Q Consensus 794 ~~~~~~~l~~P~~~~~~ 810 (813)
.=.+|.+..+|+.....
T Consensus 122 ~Ve~G~d~fI~v~g~~~ 138 (140)
T 3qbt_B 122 HLDRGKDYFLTISGNYL 138 (140)
T ss_dssp EETTSCEEEEEEEEEEC
T ss_pred EeecCCcEEEEEecccc
Confidence 77788889999877653
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=89.62 E-value=0.26 Score=60.90 Aligned_cols=25 Identities=28% Similarity=0.740 Sum_probs=23.4
Q ss_pred CCCCCCcEEEEEeeccCCCCCCCCC
Q 044171 141 EFSGEGVVIGFIDTGINPEHPSFAS 165 (813)
Q Consensus 141 ~~~G~gv~VaVIDtGid~~Hp~l~~ 165 (813)
.+.|+||+|||+|||||+.+|-|+-
T Consensus 32 ~ydGrgv~iai~DtGVDP~a~glq~ 56 (1354)
T 3lxu_X 32 EYDGRDVTIAIFDSGVDPRATGLET 56 (1354)
T ss_dssp TCSSTTCEEEEEESCCCTTSTTSSC
T ss_pred CCCCCccEEEEEeCCCCCCCCccee
Confidence 4899999999999999999999984
|
| >3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A | Back alignment and structure |
|---|
Probab=89.17 E-value=3.4 Score=44.30 Aligned_cols=86 Identities=8% Similarity=-0.013 Sum_probs=62.9
Q ss_pred CccEEEEEEEEecCCCCeeEEEEEeCCCCcE----EEEecCeEEEecCcEEEEEEEEEEecCC-------CCeEEEEEEE
Q 044171 725 VGSRKVIRRVRNVSSANETYTVTVKEPSGVK----VSVSPQVFKIRGLASRELKIVLKATNST-------RAYSFGAMVL 793 (813)
Q Consensus 725 ~~~~~~~~tv~N~~~~~~ty~~~~~~~~g~~----v~~~~~~~~v~~g~~~~~~vt~~~~~~~-------~~~~~G~i~~ 793 (813)
....+-++||+|+|.-+.+|++......... ++++|..-+|+||++.++.|++.+.... ....+--+++
T Consensus 45 ~~~~~~~l~i~N~g~~pa~f~f~~~~~~~~~~~~wl~v~p~~g~l~Pge~~~i~l~~~v~~~~~~~ln~g~~~l~diLvL 124 (366)
T 3qis_A 45 RQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYVSKDSVTILNSGEDKIEDILVL 124 (366)
T ss_dssp TCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECBCTTTHHHHHHTSSCSCEEEEE
T ss_pred CCeEEEEEEEEecCCceEEEEEEeCCCCCCCCCCcEEEeCCccEECCCCEEEEEEEEEECHHHHHHHhcCccccceEEEE
Confidence 4566777899999999999999755322221 6678999999999999999999987731 2234456666
Q ss_pred EeCCcceEEEeEEEEEe
Q 044171 794 QGNNNHIIRIPIAVYVS 810 (813)
Q Consensus 794 ~~~~~~~l~~P~~~~~~ 810 (813)
.-.++.+.-+|.-....
T Consensus 125 ~ve~G~d~FI~v~~~~~ 141 (366)
T 3qis_A 125 HLDRGKDYFLTISGNYL 141 (366)
T ss_dssp EETTSCEEEEEEEEEEC
T ss_pred EEeCCCcEEEEeccccC
Confidence 66677777777766543
|
| >2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=87.18 E-value=4.6 Score=39.86 Aligned_cols=81 Identities=19% Similarity=0.235 Sum_probs=57.2
Q ss_pred ccEEEEEEEEecCCCCeeEEEEEeCCCCcEEEEecCeEEEecCcEEEEEEEEEEecCC-CCeEEEEEEEEeC----Cc-c
Q 044171 726 GSRKVIRRVRNVSSANETYTVTVKEPSGVKVSVSPQVFKIRGLASRELKIVLKATNST-RAYSFGAMVLQGN----NN-H 799 (813)
Q Consensus 726 ~~~~~~~tv~N~~~~~~ty~~~~~~~~g~~v~~~~~~~~v~~g~~~~~~vt~~~~~~~-~~~~~G~i~~~~~----~~-~ 799 (813)
...+.+++++|.|+.+.+++..+. |.. +++++..-+++||++.+++|+++..... .+...+.|++... +. .
T Consensus 19 ~~~~~~~~i~N~g~~pl~i~~~~~-p~~--~~~~~~~~~I~PG~~g~I~vt~~~~~~~~~G~~~~~i~v~~~~~~~~~~~ 95 (220)
T 2qsv_A 19 DEGVVRLVVNNTDESDLQVAVVSL-PSF--VSLDDRAFRLQAREPRELNLSLAVPRNMPPGMKDEPLVLEVTSPETGKKA 95 (220)
T ss_dssp CCCEEEEEEEECSSSCEEEEEEEC-CTT--EECSCCEEEECSSSCEEEEEEECCCTTCCSEEEEEEEEEEEECTTTCCEE
T ss_pred CcceEEEEEEeCCCCceEEEeccC-CCc--eEeeeCcceeCCCCceEEEEEEcchhcccCCceeeEEEEEEEcCCCCccc
Confidence 345567799999999999887643 554 4445667889999999999999887753 3455677888752 22 2
Q ss_pred eEEEeEEEEE
Q 044171 800 IIRIPIAVYV 809 (813)
Q Consensus 800 ~l~~P~~~~~ 809 (813)
..++|+....
T Consensus 96 ~~~i~v~g~v 105 (220)
T 2qsv_A 96 VDSVMVSLPL 105 (220)
T ss_dssp EEEEEEEEEE
T ss_pred ccEEEEEEEE
Confidence 4467766643
|
| >3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ... | Back alignment and structure |
|---|
Probab=85.65 E-value=0.54 Score=55.01 Aligned_cols=38 Identities=26% Similarity=0.299 Sum_probs=34.6
Q ss_pred cccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEEEEeC
Q 044171 418 PALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMD 461 (813)
Q Consensus 418 ~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~ 461 (813)
..+++|||+|+.+ |.|.+.+|+.+|+++||.|+|+|++
T Consensus 150 ~~~v~GkIvlv~~------G~~~~~~Kv~~A~~~GA~gviiy~d 187 (707)
T 3fed_A 150 GINCTGKIVIARY------GKIFRGNKVKNAMLAGAIGIILYSD 187 (707)
T ss_dssp CCCCTTCEEEEEC------CSSCHHHHHHHHHHTTCSEEEEECC
T ss_pred CCCCCCeEEEEEC------CCCCHhHHHHHHHHCCCEEEEEEcC
Confidence 4579999999998 6688999999999999999999986
|
| >3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A | Back alignment and structure |
|---|
Probab=84.71 E-value=0.62 Score=53.92 Aligned_cols=39 Identities=26% Similarity=0.418 Sum_probs=35.3
Q ss_pred ccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEEEEeCCC
Q 044171 419 ALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPD 463 (813)
Q Consensus 419 ~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 463 (813)
.+++|||||+.+ |.|.+..|+.+|+.+||.|+|+|++..
T Consensus 128 vdv~GkIvlv~~------g~~~~~~K~~~A~~~GA~gvii~~~~~ 166 (640)
T 3kas_A 128 TPVNGSIVIVRA------GKITFAEKVANAESLNAIGVLIYMDQT 166 (640)
T ss_dssp SCCTTSEEEEES------CSSCHHHHHHHHHTTTCSEEEEECCTT
T ss_pred cccCCcEEEEec------CCCCHHHHHHHHHHCCCeEEEEEeccc
Confidence 479999999998 678899999999999999999999764
|
| >3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A | Back alignment and structure |
|---|
Probab=84.70 E-value=6 Score=35.34 Aligned_cols=53 Identities=13% Similarity=0.055 Sum_probs=39.6
Q ss_pred CccEEEEEEEEecCCCC-eeEEEEEeCCCCcEEEEecCeEEEecCcEEEEEEEEEEe
Q 044171 725 VGSRKVIRRVRNVSSAN-ETYTVTVKEPSGVKVSVSPQVFKIRGLASRELKIVLKAT 780 (813)
Q Consensus 725 ~~~~~~~~tv~N~~~~~-~ty~~~~~~~~g~~v~~~~~~~~v~~g~~~~~~vt~~~~ 780 (813)
+...+++.+|+|.|..+ ..|++.+.. .|-.+. ...+.|++|++++|++++.+.
T Consensus 32 G~~~ti~vtV~N~G~~~a~~~~V~lyv-ng~~v~--t~~v~La~G~s~tv~f~~~~~ 85 (127)
T 3idu_A 32 NKLAEYEVHVKNLGGIGVPSTKVRVYI-NGTLYK--NWTVSLGPKEEKVLTFNWTPT 85 (127)
T ss_dssp TCCEEEEEEEEECSSSCEEEEEEEEEE-TTEEEE--EEEEEECTTCEEEEEEEECCS
T ss_pred CCEEEEEEEEEECCCCccCCcEEEEEE-CCEEEe--eEEeccCCCCeEEEEEEEEcC
Confidence 45688899999999865 678887765 343333 335689999999999998743
|
| >3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} | Back alignment and structure |
|---|
Probab=83.14 E-value=2.2 Score=47.10 Aligned_cols=82 Identities=10% Similarity=0.066 Sum_probs=51.1
Q ss_pred CcccccceEEEEeeccCCCC-C--chhHHHH----HHHHHhcCceEEEEEeCCCCC----CCCCc-cccccCCcceEEEc
Q 044171 417 IPALVRGKLIICTYSFDFEN-D--DATIATV----ADNIKKIEAAGFILRMDPDQD----FSPNK-FKDMALDVPGIILN 484 (813)
Q Consensus 417 ~~~~~~Gkivl~~~~~~~~~-g--~~~~~~~----~~~~~~~Ga~g~i~~n~~~~~----~~~~~-~~~~~~~ip~~~i~ 484 (813)
...+++|||||+.++.+... + .+.+..| ..+|.++||.++|++++.... ..+.. .......||.+.+
T Consensus 123 ~~~dvkGKIVlv~~~~~~~~~~~~y~~~~~kr~~~a~~A~~aGA~avIi~~~~~~~~~~~~tg~~~~~~~~~~IP~~~I- 201 (444)
T 3iib_A 123 EAGSLNDKIAFIDAKTERHRDGKGYGQTASGRSRGAVAAAEKGAVGIIIRSIGTDHDRMAHTGMMRYEEGVTAIPAAAI- 201 (444)
T ss_dssp CTTTTTTCEEEECCCCCCCTTCHHHHHHHHHHHHHHHHHHHTTCSEEEEECSCSCCSSCCCCCBCCCCTTSCCCCEEEE-
T ss_pred cccccCccEEEEeCCCCCCcccccccchhhhhhhHHHHHHHCCCeEEEEEccCCcccccccCCccccCCCCCCCCeEEe-
Confidence 35689999999987432111 1 1123333 457999999999999975311 11111 1122456899888
Q ss_pred ccchhHHHHHHHhhc
Q 044171 485 NMQSSMDLLEYYNSH 499 (813)
Q Consensus 485 ~~~~g~~~~~~~~~~ 499 (813)
+.++++.|...+...
T Consensus 202 s~~da~~L~~~l~~g 216 (444)
T 3iib_A 202 SNPDADLINAMLKRD 216 (444)
T ss_dssp CHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHhCC
Confidence 677888888877643
|
| >1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2 | Back alignment and structure |
|---|
Probab=80.40 E-value=4.9 Score=35.29 Aligned_cols=50 Identities=12% Similarity=0.102 Sum_probs=42.6
Q ss_pred EEEEEEEecCCCCeeEEEEEeCCCCcEEEEecCeEEEecCcEEEEEEEEEEe
Q 044171 729 KVIRRVRNVSSANETYTVTVKEPSGVKVSVSPQVFKIRGLASRELKIVLKAT 780 (813)
Q Consensus 729 ~~~~tv~N~~~~~~ty~~~~~~~~g~~v~~~~~~~~v~~g~~~~~~vt~~~~ 780 (813)
+.+++|+|.+++...|++....|. ...+.|..=.|.||++.+|.|+..+.
T Consensus 26 ~~~l~L~N~t~~~vAFKVKtT~p~--~YrVrP~~G~I~Pg~~~~I~I~~q~~ 75 (116)
T 1m1s_A 26 NSTHNITSESDSRLAFKVKSSNNE--HYRVRPVYGFVDAKGKSKLDINRLPG 75 (116)
T ss_dssp EEEEEEEECSSSEEEEEEEESCTT--TEEEECSEEEECTTCEEEEEEEECSC
T ss_pred EEEEEEECCCCCeEEEEEEecCCC--ceEEcCCceEECCCCeEEEEEEeCCC
Confidence 445699999999999999988765 56677888889999999999999874
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 813 | ||||
| d1v6ca_ | 435 | c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseud | 8e-35 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 8e-14 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 1e-07 | |
| d2ixta1 | 309 | c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus | 6e-12 | |
| d2ixta1 | 309 | c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus | 5e-04 | |
| d1r0re_ | 274 | c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls | 2e-11 | |
| d1r0re_ | 274 | c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls | 5e-06 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 3e-11 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 2e-06 | |
| d1p8ja2 | 334 | c.41.1.1 (A:109-442) Furin, N-terminal domain {Mou | 9e-11 | |
| d1p8ja2 | 334 | c.41.1.1 (A:109-442) Furin, N-terminal domain {Mou | 1e-04 | |
| d1gcia_ | 269 | c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: | 1e-10 | |
| d1gcia_ | 269 | c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: | 3e-04 | |
| d1ga6a_ | 369 | c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pse | 3e-10 | |
| d1wmda2 | 318 | c.41.1.1 (A:1-318) Alkaline serine protease kp-43, | 6e-10 | |
| d1wmda2 | 318 | c.41.1.1 (A:1-318) Alkaline serine protease kp-43, | 2e-06 | |
| d1t1ga_ | 357 | c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bac | 1e-09 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 2e-09 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 3e-06 | |
| d2id4a2 | 339 | c.41.1.1 (A:122-460) Kexin, N-terminal domain {Bak | 4e-09 | |
| d2id4a2 | 339 | c.41.1.1 (A:122-460) Kexin, N-terminal domain {Bak | 2e-05 | |
| d2pwaa1 | 279 | c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirach | 4e-08 | |
| d2pwaa1 | 279 | c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirach | 0.002 | |
| d1thma_ | 279 | c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgar | 2e-06 | |
| d1thma_ | 279 | c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgar | 3e-05 |
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} Length = 435 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Score = 135 bits (341), Expect = 8e-35
Identities = 87/552 (15%), Positives = 164/552 (29%), Gaps = 138/552 (25%)
Query: 141 EFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQ 200
+ I ID+G + H ++
Sbjct: 18 DSQAGNRTICIIDSGYDRSHNDLNAN---------------------------------- 43
Query: 201 YFARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGA 260
+ + + T ++ P + + HG+H A T A N G G+ P
Sbjct: 44 -----NVTGTNNSGTGNWYQPGNNNAHGTHVAGTIAAI--------ANNEGVV-GVMPNQ 89
Query: 261 RIAVYKALYTFGGYMADVVAAVDQAVEDGVDIISLSVGPSAVPSGPAAFLNALEMELLFA 320
++ + F +++ A++ V+ +V + G + L
Sbjct: 90 NANIH-IVKVFNEAGWGYSSSLVAAIDTCVNSGGANV--VTMSLGGSGSTTTERNALNTH 146
Query: 321 TKAGVLVVQAAGNSGPSSSSILSFSPWITSIAASITDRKYNNTIKLANGHSFSGIGLAPP 380
GVL++ AAGN+G SS S + + S+AA ++ + +FS
Sbjct: 147 YNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHA---------AFSQYT---- 193
Query: 381 TLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDAT 440
V I S + L + G+ +
Sbjct: 194 ------------DQVEISGPGEAILSTVTVGEGRLA-DITIGGQSYFSNGVVPHNRLTPS 240
Query: 441 IATVADNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHT 500
+ A A G + + NM + + L+E +
Sbjct: 241 GTSYAPAPINASATGALAECTVNGTSFSCG--------------NMANKICLVERVGN-- 284
Query: 501 IKSRAGQAVVFHARARILDGRRAIYHGQAPVVASYSSRGPDVNNALL--QTADVLKPNIM 558
+ I + G ++ +S P + N L +D+ P++
Sbjct: 285 ---------QGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVPSVS 335
Query: 559 APGSSIWAAWSPSSEGD--PNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAIT 616
++ A + + N +++ +GTSMATPH++GVA L+ HP+ S + +
Sbjct: 336 VDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTSMATPHVSGVATLVWSYHPECSASQVR 395
Query: 617 SAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGFINPARAIDPGLIFNAH 676
+A+ +A+ +G G G IN A
Sbjct: 396 AALNATADDLSVAG---------------------RDNQTGYGMINAVAAKA-------- 426
Query: 677 FQEYVQFLCAVP 688
Y+ C P
Sbjct: 427 ---YLDESCTGP 435
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 72.8 bits (177), Expect = 8e-14
Identities = 50/298 (16%), Positives = 83/298 (27%), Gaps = 49/298 (16%)
Query: 475 ALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPV--- 531
A D ++N+ + V+ + Y P
Sbjct: 256 ATDHGAKVMNHSWGGWGYSYTMKEAFDYAMEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQ 315
Query: 532 VASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAW--------SPSSEGDPNLKGRNF 583
VA+ G A ++ ++ APG +I + +E P G +
Sbjct: 316 VAALDYYGGTFRVAG-FSSRSDGVSVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTY 374
Query: 584 ALLSGTSMATPHIAGVAALIKQRHPKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPI 643
GTSMA PH+ GV A++ Q+ P P I + +A + +G
Sbjct: 375 DYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNG------------- 421
Query: 644 LEHVLVHATPFDFGAGFINPARAIDPGLIFNAHFQEYVQFLCAVPGVDDDYVRRVTGYGC 703
D G G + A+ L V +G
Sbjct: 422 --------WDHDTGYGLVKLDAALQGPLPTQG----------GVEEFQVVVTDAKGNFGV 463
Query: 704 PTENQGWCSDLNTPSITISNLVGSRKVIRRVRNVSSANETYTVTVKEPSGVKVSVSPQ 761
PT D + + G R + TY + V P +++P
Sbjct: 464 PTVFVSMMRDNGSCYYAKTGPDGI------ARFPHIDSGTYDIFVGGPDHWDRALAPY 515
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 53.1 bits (126), Expect = 1e-07
Identities = 41/246 (16%), Positives = 68/246 (27%), Gaps = 62/246 (25%)
Query: 143 SGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYF 202
SG +++ +DTG++ HP +G+ G R
Sbjct: 152 SGTNIIVAVVDTGVDGTHPD--------------LEGQVIAGYRP--------------- 182
Query: 203 ARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARI 262
G+H A T A + G+APGA+I
Sbjct: 183 -------AFDEELPAGTDSSYGGSAGTHVAGTIAAKK---------DGKGIVGVAPGAKI 226
Query: 263 AVYKALYTFG-------GYMADVVAAVDQAVEDGVDIISL-SVGPSAVPSGPAAFLNALE 314
V A + A + G +++ G + AF A+E
Sbjct: 227 MPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWGYSYTMKEAFDYAME 286
Query: 315 MELLFATKAGVLVVQAAGNSGPSSSSILSFSPWITSIAASITDRKYNNTIKLANGHSFSG 374
++ VV A N+ S + P + +AA D G
Sbjct: 287 HGVVM-------VVSAGNNTSDSHHQYPAGYPGVIQVAA--LDYYGGTFRVAGFSSRSDG 337
Query: 375 IGLAPP 380
+ + P
Sbjct: 338 VSVGAP 343
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Score = 65.3 bits (157), Expect = 6e-12
Identities = 30/109 (27%), Positives = 43/109 (39%), Gaps = 24/109 (22%)
Query: 554 KPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPA 613
I APGSS+++ W + +SGTSMATPH++G+AA I +P S
Sbjct: 224 DIEISAPGSSVYSTWY----------NGGYNTISGTSMATPHVSGLAAKIWAENPSLSNT 273
Query: 614 AITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGFIN 662
+ S + A+ D G A + G GF
Sbjct: 274 QLRSNLQERAKSVDIKGGYGAAI--------------GDDYASGFGFAR 308
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Score = 40.6 bits (93), Expect = 5e-04
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 142 FSGEGVVIGFIDTGINPEHPSFA 164
G G+ I +DTG+N HP
Sbjct: 23 TGGSGINIAVLDTGVNTSHPDLV 45
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Score = 63.4 bits (153), Expect = 2e-11
Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 34/114 (29%)
Query: 554 KPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPA 613
+ +MAPG+ +++ + ++ +A L+GTSMA+PH+AG AALI +HP S +
Sbjct: 194 ELEVMAPGAGVYSTYPTNT----------YATLNGTSMASPHVAGAAALILSKHPNLSAS 243
Query: 614 AITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGFINPARAI 667
+ + + ++A S F +G G IN A
Sbjct: 244 QVRNRLSSTATYLGSS------------------------FYYGKGLINVEAAA 273
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Score = 46.5 bits (109), Expect = 5e-06
Identities = 57/290 (19%), Positives = 100/290 (34%), Gaps = 65/290 (22%)
Query: 142 FSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQY 201
F G V + +DTGI HP
Sbjct: 21 FKGANVKVAVLDTGIQASHPDL-------------------------------------- 42
Query: 202 FARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGAR 261
+ F + ++ DG+G H + + N G+AP
Sbjct: 43 ---NVVGGASFVAG----EAYNTDGNGHG-------THVAGTVAALDNTTGVLGVAPSVS 88
Query: 262 IAVYKALYTFG-GYMADVVAAVDQAVEDGVDIISLSVGPSAVPSGPAAFLNALEMELLFA 320
+ K L + G G + +V+ ++ A +G+D+I+ + G A+ A++ + A
Sbjct: 89 LYAVKVLNSSGSGSYSGIVSGIEWATTNGMDVIN-------MSLGGASGSTAMKQAVDNA 141
Query: 321 TKAGVLVVQAAGNSGPSSSSILSFSPWITSIAASITDRKYNNTIKLANGHSFSGIGLAPP 380
GV+VV AAGNSG S S+ P ++ N+ + +AP
Sbjct: 142 YARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDSNSNRASFSSVGAELEVMAPG 201
Query: 381 TLGRVYYPLAAAADVCHRNVST----GIFSLESCQYPELFIPALVRGKLI 426
YP A + ++++ G +L ++P L + VR +L
Sbjct: 202 AGVYSTYPTNTYATLNGTSMASPHVAGAAALILSKHPNLS-ASQVRNRLS 250
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 62.6 bits (151), Expect = 3e-11
Identities = 36/137 (26%), Positives = 52/137 (37%), Gaps = 47/137 (34%)
Query: 532 VASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSM 591
AS+SS GP+++ MAPG SI + G + +GTSM
Sbjct: 186 RASFSSVGPELDV-------------MAPGVSIQSTLP----------GNKYGAYNGTSM 222
Query: 592 ATPHIAGVAALIKQRHPKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHA 651
A+PH+AG AALI +HP W+ + S++ +
Sbjct: 223 ASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGD----------------------- 259
Query: 652 TPFDFGAGFINPARAID 668
F +G G IN A
Sbjct: 260 -SFYYGKGLINVQAAAQ 275
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 48.0 bits (113), Expect = 2e-06
Identities = 46/230 (20%), Positives = 80/230 (34%), Gaps = 61/230 (26%)
Query: 135 PTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNS 194
P L ++G V + ID+GI+ HP
Sbjct: 14 PALHSQGYTGSNVKVAVIDSGIDSSHPDLK------------------------------ 43
Query: 195 KIVGAQYFARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYAS 254
G + +PF + G H + + N
Sbjct: 44 -------------VAGGASMVPSETNPFQDNNSH--------GTHVAGTVAALNNSIGVL 82
Query: 255 GMAPGARIAVYKALYTFG-GYMADVVAAVDQAVEDGVDIISLSVGPSAVPSGPAAFLNAL 313
G+AP A + K L G G + ++ ++ A+ + +D+I++S+G + + A ++
Sbjct: 83 GVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGGPSGSAALKAAVD-- 140
Query: 314 EMELLFATKAGVLVVQAAGNSGP--SSSSILSFSPWITSIAASITDRKYN 361
A +GV+VV AAGN G SSS++ + + IA D
Sbjct: 141 -----KAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSSNQ 185
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 334 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 61.7 bits (148), Expect = 9e-11
Identities = 18/192 (9%), Positives = 51/192 (26%), Gaps = 12/192 (6%)
Query: 477 DVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPVVASYS 536
+ G ++ + + + G V+ + + G + + S
Sbjct: 149 EDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLS 208
Query: 537 SRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHI 596
+ ++ + SS D + +GTS + P
Sbjct: 209 ISSATQFGNVPWYSEACSSTLATTYSSGNQNEKQIVTTDLR--QKCTESHTGTSASAPLA 266
Query: 597 AGVAALIKQRHPKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDF 656
AG+ AL + + + + ++ +++ + +
Sbjct: 267 AGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNGVGRKV----------SHSY 316
Query: 657 GAGFINPARAID 668
G G ++ +
Sbjct: 317 GYGLLDAGAMVA 328
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 334 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 42.5 bits (98), Expect = 1e-04
Identities = 45/277 (16%), Positives = 68/277 (24%), Gaps = 51/277 (18%)
Query: 142 FSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQY 201
F+G G+V+ +D GI HP A G G F
Sbjct: 34 FTGHGIVVSILDDGIEKNHPDLA--------------GNYDPGASF-------------- 65
Query: 202 FARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGAR 261
D N P + + + A V N G+A AR
Sbjct: 66 ---------DVNDQDPDPQPRYTQMNDNRHGTRCA----GEVAAVANNGVCGVGVAYNAR 112
Query: 262 IAVYKALYTFGGYMADVVAAVDQAVEDGVDIISLSVGPSAVPSGPAAFLNALEMELL--- 318
I + L + + + + I S S GP E
Sbjct: 113 IGGVRMLDGEVTDAVEARSL--GLNPNHIHIYSASWGPEDDGKTVDGPARLAEEAFFRGV 170
Query: 319 --FATKAGVLVVQAAGNSGPSSSSILSFSPWITSIAASITDRKYNNTIKLANGHSFSGIG 376
G + V A+GN G S T+ +++ + +S +
Sbjct: 171 SQGRGGLGSIFVWASGNGGREHDSC--NCDGYTNSIYTLSISSATQFGNV-PWYSEACSS 227
Query: 377 LAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYP 413
T R T + S P
Sbjct: 228 TLATTYSSGNQNEKQIVTTDLRQKCTESHTGTSASAP 264
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Score = 60.3 bits (145), Expect = 1e-10
Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 27/108 (25%)
Query: 560 PGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAITSAM 619
G I A P G +A L+GTSMATPH+AG AAL+KQ++P WS I + +
Sbjct: 188 AGLDIVAPGVNVQSTYP---GSTYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHL 244
Query: 620 MTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGFINPARAI 667
+A + +G+G +N A
Sbjct: 245 KNTATSLGSTN------------------------LYGSGLVNAEAAT 268
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Score = 41.1 bits (95), Expect = 3e-04
Identities = 57/292 (19%), Positives = 88/292 (30%), Gaps = 74/292 (25%)
Query: 142 FSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQY 201
+G GV + +DTGI+ HP
Sbjct: 21 LTGSGVKVAVLDTGIST-HPDL-------------------------------------- 41
Query: 202 FARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGAR 261
F S D +GHG+H A T A + N G+AP A
Sbjct: 42 ---NIRGGASFVP--GEPSTQDGNGHGTHVAGTIA---------ALNNSIGVLGVAPSAE 87
Query: 262 IAVYKALYTFG-GYMADVVAAVDQAVEDGVDIISLSVGPSAVPSGPAAFLNALEMELLFA 320
+ K L G G ++ + ++ A +G+ + + PS A A+
Sbjct: 88 LYAVKVLGASGSGSVSSIAQGLEWAGNNGMHVAN---LSLGSPSPSATLEQAVNSA---- 140
Query: 321 TKAGVLVVQAAGNSGPSSSSILSFSPWITSIAASITDRK------YNNTIKLANGHSFSG 374
T GVLVV A+GNSG S S + ++ A+ + Y + +
Sbjct: 141 TSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQNNNRASFSQYGAGLDIVAPGVNVQ 200
Query: 375 IGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLI 426
T + A V G +L + P +R L
Sbjct: 201 STYPGSTYASLNGTSMATPHV------AGAAALVKQKNPSWS-NVQIRNHLK 245
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} Length = 369 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Score = 60.8 bits (146), Expect = 3e-10
Identities = 26/241 (10%), Positives = 58/241 (24%), Gaps = 48/241 (19%)
Query: 143 SGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYF 202
+ +G I G + Q+
Sbjct: 23 TAANTTVGIITIGGVSQTLQDL----------------------------------QQFT 48
Query: 203 ARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARI 262
+ + +T+ + + + + G A GA
Sbjct: 49 SANGL---ASVNTQTIQTGSSNGDYSDDQQGQGEWDL---------DSQSIVGSAGGAVQ 96
Query: 263 AVYKALYTFG-GYMADVVAAVDQAVED-GVDIISLSVGPSAVPSGPAAFLNALEMELLFA 320
+ + + A +QAV D +I++S+G + L A + A
Sbjct: 97 QLLFYMADQSASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTLQAEDRIFATA 156
Query: 321 TKAGVLVVQAAGNSGPSSSSILSFSPWITSIAASITDRKYNNTIKLANGHSFSGIGLAPP 380
G ++G+ G + + T + + ++ S +
Sbjct: 157 AAQGQTFSVSSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTLYTTSAGAYSNE 216
Query: 381 T 381
T
Sbjct: 217 T 217
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Score = 59.1 bits (141), Expect = 6e-10
Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 28/123 (22%)
Query: 553 LKPNIMAPGSSIWAAWSPSSEGDPNLKGRNF--ALLSGTSMATPHIAGVAALIKQRHPK- 609
+KP++MAPG+ I +A S + + A + GTSMATP +AG A +++ K
Sbjct: 216 IKPDVMAPGTFILSARSSLAPDSSFWANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKN 275
Query: 610 ----WSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGFINPAR 665
P+ + +A++ A + G G + +
Sbjct: 276 RGITPKPSLLKAALIAGAADIGLGYP---------------------NGNQGWGRVTLDK 314
Query: 666 AID 668
+++
Sbjct: 315 SLN 317
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Score = 48.0 bits (112), Expect = 2e-06
Identities = 30/167 (17%), Positives = 49/167 (29%), Gaps = 53/167 (31%)
Query: 133 VWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTAC 192
+ G G+G ++ DTG++ + H F+GK T
Sbjct: 13 AQSSYG---LYGQGQIVAVADTGLDTGRNDSSMH--------EAFRGKITALYALG---- 57
Query: 193 NSKIVGAQYFARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGY 252
+ D +GHG+H A + N
Sbjct: 58 ------------------------RTNNANDTNGHGTHVAGS-----------VLGNGST 82
Query: 253 ASGMAPGARIAVYKALYTFGGYM---ADVVAAVDQAVEDGVDIISLS 296
GMAP A + + + GG +++ QA G I + S
Sbjct: 83 NKGMAPQANLVFQSIMDSGGGLGGLPSNLQTLFSQAYSAGARIHTNS 129
|
| >d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]
Score = 58.6 bits (140), Expect = 1e-09
Identities = 45/195 (23%), Positives = 62/195 (31%), Gaps = 48/195 (24%)
Query: 142 FSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQY 201
G+G I I G + S AQY
Sbjct: 21 LDGQGQCIAIIALGGGYDETSL-----------------------------------AQY 45
Query: 202 FARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGAR 261
FA ++ DG + G + A +APGA+
Sbjct: 46 FASLGVSAPQV-------VSVSVDGATNQPTGDPNGPD----GEVELDIEVAGALAPGAK 94
Query: 262 IAVYKALYTFGGYMADVVAAVDQAVEDGVDIISLSVGPSAVPSGPAAFLNALEMELLFAT 321
IAVY A T G++ + AV I+S+S G S A + A+ L A
Sbjct: 95 IAVYFAPNTDAGFLNAITTAVHDP-THKPSIVSISWGG-PEDSWAPASIAAMNRAFLDAA 152
Query: 322 KAGVLVVQAAGNSGP 336
GV V+ AAG+SG
Sbjct: 153 ALGVTVLAAAGDSGS 167
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 56.9 bits (136), Expect = 2e-09
Identities = 51/212 (24%), Positives = 78/212 (36%), Gaps = 57/212 (26%)
Query: 144 GEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFA 203
G I IDTG++ HP GK G F +
Sbjct: 30 SSGQEIAVIDTGVDYTHPD--------------LDGKVIKGYDFVDNDYD---------- 65
Query: 204 RAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIA 263
P D + HG+H A AA N +GMAP RI
Sbjct: 66 -----------------PMDLNNHGTHVAGIAAAETN--------NATGIAGMAPNTRIL 100
Query: 264 VYKALYTFG-GYMADVVAAVDQAVEDGVDIISLSVGPSAVPSGPAAFLNALEMELLFATK 322
+AL G G ++D+ A+ A + G ++I+LS+G + +N +A
Sbjct: 101 AVRALDRNGSGTLSDIADAIIYAADSGAEVINLSLGCDCHTTTLENAVN-------YAWN 153
Query: 323 AGVLVVQAAGNSGPSSSSILSFSPWITSIAAS 354
G +VV AAGN+G S++ + + ++ A
Sbjct: 154 KGSVVVAAAGNNGSSTTFEPASYENVIAVGAV 185
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 47.3 bits (111), Expect = 3e-06
Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 25/101 (24%)
Query: 568 WSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAITSAMMTSAEVTD 627
+P + + G +A +SGTSMA+PH+AG+AAL+ + + I A+ +A+
Sbjct: 204 VAPGVDIVSTITGNRYAYMSGTSMASPHVAGLAALLASQGR--NNIEIRQAIEQTADKIS 261
Query: 628 HSGSPILAQDYSDSPILEHVLVHATPFDFGAGFINPARAID 668
+G+ F G IN A+
Sbjct: 262 GTGT-----------------------YFKYGRINSYNAVT 279
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 57.1 bits (136), Expect = 4e-09
Identities = 19/105 (18%), Positives = 36/105 (34%), Gaps = 9/105 (8%)
Query: 564 IWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAITSAMMTSA 623
+++ S ++ GR GTS A P AGV L+ + +P + + + SA
Sbjct: 238 TYSSGSGEYIHSSDINGRCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSA 297
Query: 624 EVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGFINPARAID 668
+ + +G G I+ + I+
Sbjct: 298 VGLEKNADGDWRDSAMG---------KKYSHRYGFGKIDAHKLIE 333
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.5 bits (106), Expect = 2e-05
Identities = 42/299 (14%), Positives = 82/299 (27%), Gaps = 61/299 (20%)
Query: 142 FSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQY 201
+G GVV +D G++ E+ +
Sbjct: 43 ITGAGVVAAIVDDGLDYENEDLKDN----------------------------------- 67
Query: 202 FARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGAR 261
A G ++ + P H A N G+ A+
Sbjct: 68 ----FCAEGSWDFNDNTNLPKPRLSDDYHGTRCAGEIAA-----KKGNNFCGVGVGYNAK 118
Query: 262 IAVYKALYTFGGYMADVVAAVDQAVEDGVDIISLSVGPSAVPSGPAAFLNALEMELL--- 318
I+ + L D A++ + D DI S S GP+ + ++ L+
Sbjct: 119 ISGIRILS-GDITTEDEAASLIYGL-DVNDIYSCSWGPADDGRHLQGPSDLVKKALVKGV 176
Query: 319 --FATKAGVLVVQAAGNSGPSSSSILSFSPWITSIAASITDRKYNNTIKLANGHSFSGIG 376
G + V A+GN G + + + +I + + + + +
Sbjct: 177 TEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDHKDLHPPYSEGCSAVMA 236
Query: 377 LAPPTLGRVYYPLAAAADVCHRNVS---------TGIFSLESCQYPELFIPALVRGKLI 426
+ + Y + C + G+++L P L V+ I
Sbjct: 237 VTYSSGSGEYIHSSDINGRCSNSHGGTSAAAPLAAGVYTLLLEANPNLT-WRDVQYLSI 294
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Score = 53.2 bits (126), Expect = 4e-08
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 563 SIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAITSAMMTS 622
S+ + P ++ G + +SGTSMATPH+AG+AA + + +A + +
Sbjct: 197 SVLDIFGPGTDILSTWIGGSTRSISGTSMATPHVAGLAAYLMTLGKTTAASAC-RYIADT 255
Query: 623 AEVTDHSGSP 632
A D S P
Sbjct: 256 ANKGDLSNIP 265
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Score = 38.6 bits (88), Expect = 0.002
Identities = 18/105 (17%), Positives = 32/105 (30%)
Query: 143 SGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYF 202
+G+G + IDTGI HP F + + G T + A+
Sbjct: 29 AGQGSCVYVIDTGIEASHPEFEGRAQMVKTYYYSSRDGNGHGTHCAGTVGSRTYGVAKKT 88
Query: 203 ARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSG 247
+ D N + Y++ + + V +S
Sbjct: 89 QLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGVVASLSL 133
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Score = 48.2 bits (113), Expect = 2e-06
Identities = 45/215 (20%), Positives = 71/215 (33%), Gaps = 57/215 (26%)
Query: 144 GEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFA 203
G G I +DTG+ HP A K+VG F
Sbjct: 29 GSGAKIAIVDTGVQSNHPDLA-----------------------------GKVVGGWDFV 59
Query: 204 RAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIA 263
+ N + + A N +G AP A I
Sbjct: 60 DNDSTPQNGNGHGTHCAGIAAAVTN--------------------NSTGIAGTAPKASIL 99
Query: 264 VYKALYTFG-GYMADVVAAVDQAVEDGVDIISLSVGPSAVPSGPAAFLNALEMELLFATK 322
+ L G G V + A + G +ISLS+G + SG +N A
Sbjct: 100 AVRVLDNSGSGTWTAVANGITYAADQGAKVISLSLGGTVGNSGLQQAVNY-------AWN 152
Query: 323 AGVLVVQAAGNSGPSSSSILSFSPWITSIAASITD 357
G +VV AAGN+G ++ + ++ ++A++ +
Sbjct: 153 KGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQN 187
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Score = 44.3 bits (103), Expect = 3e-05
Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 28/105 (26%)
Query: 564 IWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSPAAITSAMMTSA 623
+ A S P +A LSGTSMATPH+AGVA L+ + S + I +A+ +A
Sbjct: 202 VAAPGSSIYSTYPT---STYASLSGTSMATPHVAGVAGLLASQGR--SASNIRAAIENTA 256
Query: 624 EVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGFINPARAID 668
+ +G+ + G +N +A+
Sbjct: 257 DKISGTGT-----------------------YWAKGRVNAYKAVQ 278
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 813 | |||
| d1r6va_ | 671 | Fervidolysin {Fervidobacterium pennivorans [TaxId: | 100.0 | |
| d1v6ca_ | 435 | Alkaline serine protease Apa1 {Pseudoalteromonas s | 100.0 | |
| d1dbia_ | 280 | Thermostable serine protease {Bacillus sp., AK.1 [ | 100.0 | |
| d1thma_ | 279 | Thermitase {Thermoactinomyces vulgaris [TaxId: 202 | 100.0 | |
| d1r0re_ | 274 | Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1 | 100.0 | |
| d1to2e_ | 281 | Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' | 100.0 | |
| d1gcia_ | 269 | Subtilisin {Bacillus lentus [TaxId: 1467]} | 100.0 | |
| d2ixta1 | 309 | Sphericase {Bacillus sphaericus [TaxId: 1421]} | 100.0 | |
| d2pwaa1 | 279 | Proteinase K {Fungus (Tritirachium album), strain | 100.0 | |
| d1wmda2 | 318 | Alkaline serine protease kp-43, N-terminal domain | 100.0 | |
| d1p8ja2 | 334 | Furin, N-terminal domain {Mouse (Mus musculus) [Ta | 100.0 | |
| d2id4a2 | 339 | Kexin, N-terminal domain {Baker's yeast (Saccharom | 100.0 | |
| d1t1ga_ | 357 | Serine-carboxyl proteinase, SCP {Bacillus novosp. | 99.96 | |
| d1ga6a_ | 369 | Serine-carboxyl proteinase, SCP {Pseudomonas sp., | 99.94 | |
| d1scjb_ | 71 | Subtilisin prosegment {Bacillus subtilis [TaxId: 1 | 98.44 | |
| d1v5ib1 | 72 | Proteinase A inhibitor 1, POIA1 {Oyster mushroom ( | 98.22 | |
| d1w8oa1 | 103 | Sialidase, "linker" domain {Micromonospora viridif | 96.71 | |
| d1de4c2 | 193 | Transferrin receptor ectodomain, apical domain {Hu | 93.2 | |
| d3bi1a2 | 233 | Glutamate carboxypeptidase II {Human (Homo sapiens | 91.96 | |
| d1rowa_ | 107 | SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: | 85.42 | |
| d1ex0a2 | 112 | Transglutaminase, two C-terminal domains {Human (H | 85.31 | |
| d2vzsa2 | 122 | Exochitosanase CsxA, domains 2, 4 and 5 {Amycolato | 82.69 | |
| d1m1sa_ | 109 | WR4 {Nematode (Caenorhabditis elegans) [TaxId: 623 | 81.91 | |
| d1grwa_ | 124 | Major sperm protein, MSP {Nematode (Caenorhabditis | 81.76 |
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Probab=100.00 E-value=1.9e-52 Score=492.25 Aligned_cols=359 Identities=23% Similarity=0.325 Sum_probs=260.8
Q ss_pred CCcEEEEEeCCCCcchhhhcccccCCchhhhHhhhhhhhhHHHHHHHHhcCCceeeEEEeccceeEEEEEeCHH---HHH
Q 044171 22 NAKVFIVLMDEEPVTSLKLERSYDRNETDAIVYKERISGGHDRFLESLLHGHSYTKLYSYTHLLSGFAIHIESE---EAV 98 (813)
Q Consensus 22 ~~~~yiV~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~ 98 (813)
.+++|||+||++.. .+++++++ +.+++.++. .++.+.++++.. +..
T Consensus 30 ~~~~~iV~~k~~~~--------------------------~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 78 (671)
T d1r6va_ 30 TEGKILVGYNDRSE--------------------------VDKIVKAV----NGKVVLELP-QIKVVSIKLNGMTVKQAY 78 (671)
T ss_dssp CTTEEEEEESSHHH--------------------------HHHHHHHH----TCEEEEEEG-GGTEEEEECSSCCHHHHH
T ss_pred CCCeEEEEECCccC--------------------------HHHHHHhc----CCEEEEEec-ccceEEEEcCchhHHHHH
Confidence 47899999987531 22333333 234445544 456777776643 222
Q ss_pred HHH--hcCcCeeEEEeCccceeccC----CCCc----------------------------ccCCCCCCCCCCCCCCCCC
Q 044171 99 STL--QNAKGVRIIHEDIKMEKLTM----HTPE----------------------------FLGIPVGVWPTLGGAEFSG 144 (813)
Q Consensus 99 ~~L--~~~p~V~~v~~~~~~~~~~~----~~~~----------------------------~~~~~~~~w~~~~~~~~~G 144 (813)
+.+ ..+|+|++|||+...++... ..+. .+++++..|+ .++|
T Consensus 79 ~~~~~~~~~~V~~vep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~~i~~~~a~~~-----~~tG 153 (671)
T d1r6va_ 79 DKIKALALKGIRYVEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEELSNELWGLEAIGVTQQLWE-----EASG 153 (671)
T ss_dssp HHHTTSCCSSEEEEECCBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTTGGGCHHHHHTTCCHHHHH-----HCSC
T ss_pred HHHHHhcCCCceEECcceeEeeccccccCCCccccccccccccccccCcCccccccCcChhhcCccHHHHh-----cCCC
Confidence 333 35799999999876554211 0000 0122221244 3799
Q ss_pred CCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCCCCCCCCCCCCCC
Q 044171 145 EGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYASPFDA 224 (813)
Q Consensus 145 ~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~ 224 (813)
+||+|||||||||++||||.++.. .++++..+. ......++.|.
T Consensus 154 ~gV~VaViDtGvd~~Hpdl~~~~~-----------------------------~~~~~~~~~-------~~~~~~~~~d~ 197 (671)
T d1r6va_ 154 TNIIVAVVDTGVDGTHPDLEGQVI-----------------------------AGYRPAFDE-------ELPAGTDSSYG 197 (671)
T ss_dssp TTCEEEEEESCCBTTSGGGTTTBC-----------------------------CEEEGGGTE-------EECTTCBCCTT
T ss_pred CCCEEEEEcCCcCCCChhhcCCcc-----------------------------cCccccccC-------CCCCCCcCccc
Confidence 999999999999999999987532 222322110 00111345578
Q ss_pred CCCccccccccccCCCccceecccccccccccccCccEEEEEEeeC------CC-CCHHHHHHHHHHHHhCCCcEEEEcc
Q 044171 225 DGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYT------FG-GYMADVVAAVDQAVEDGVDIISLSV 297 (813)
Q Consensus 225 ~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~------~g-~~~~~i~~ai~~a~~~g~~VIn~S~ 297 (813)
+||||||||||+|+.+. .++.||||+|+|+++|++++ .+ ...+++++||+||+++|++||||||
T Consensus 198 ~gHGT~VAGiiaa~~~~---------~g~~GvAp~a~l~~~rv~~~~~~~~~~g~~~~~~i~~ai~~a~~~g~~Vin~S~ 268 (671)
T d1r6va_ 198 GSAGTHVAGTIAAKKDG---------KGIVGVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSW 268 (671)
T ss_dssp CSHHHHHHHHHHCCCSS---------SSCCCSCTTSEEEEEESBCCHHHHCTTSBCCHHHHHHHHHHHHHTTCSEEEECE
T ss_pred CCCCccccceeeeeccc---------cceeeecCcceEEEEEecccccccCCCCcccHHHHHHHHHHHHhCCCcEEeccc
Confidence 89999999999997531 34689999999999999975 23 5567799999999999999999999
Q ss_pred CCCCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCC-CCCCCCCCceEEEeecccCccccceeeecCCcEEEeee
Q 044171 298 GPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSS-SSILSFSPWITSIAASITDRKYNNTIKLANGHSFSGIG 376 (813)
Q Consensus 298 G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~ 376 (813)
|+.. ....++.+++.|.++|+++|+||||++.+. ..+|+..|++|+|||++.+..
T Consensus 269 g~~~-------~~~~~~~ai~~a~~~gv~vV~aAGN~~~~~~~~~Pa~~~~vi~Vga~~~~~~----------------- 324 (671)
T d1r6va_ 269 GGWG-------YSYTMKEAFDYAMEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAALDYYGG----------------- 324 (671)
T ss_dssp EBSC-------CCHHHHHHHHHHHHTTCEEEEECCSCSSSCCCCBTTTSTTCEEEEEEEEETT-----------------
T ss_pred cccc-------CChHHHHHHHHHHhccCcEEEEEecCCCCccccCCccCCceEEEEEecCCCC-----------------
Confidence 9753 235678888999999999999999998754 467888999999999542100
Q ss_pred cCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEE
Q 044171 377 LAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGF 456 (813)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~ 456 (813)
T Consensus 325 -------------------------------------------------------------------------------- 324 (671)
T d1r6va_ 325 -------------------------------------------------------------------------------- 324 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeeeeecCCCCeeeecc
Q 044171 457 ILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPVVASYS 536 (813)
Q Consensus 457 i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~s~FS 536 (813)
...+++||
T Consensus 325 ------------------------------------------------------------------------~~~~a~fS 332 (671)
T d1r6va_ 325 ------------------------------------------------------------------------TFRVAGFS 332 (671)
T ss_dssp ------------------------------------------------------------------------EEEECSSS
T ss_pred ------------------------------------------------------------------------cceeeecc
Confidence 01378999
Q ss_pred cCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCC--------CCCCCCcceeeeccCChhhHHHHHHHHHHHhCC
Q 044171 537 SRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGD--------PNLKGRNFALLSGTSMATPHIAGVAALIKQRHP 608 (813)
Q Consensus 537 S~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~--------~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p 608 (813)
+|||.. ||+|||++|+|+++...... ....++.|..++|||||||||||++|||+|++|
T Consensus 333 ~~g~~~-------------dv~APG~~i~st~~~~~~~~~~~~~~~~~~~~~~~y~~~sGTS~AaP~VaG~aALl~~~~p 399 (671)
T d1r6va_ 333 SRSDGV-------------SVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQKFP 399 (671)
T ss_dssp CCCTTE-------------EEEEECSSEEEECCCTTSTTCCCCCTTCCCSSSCCEEEEESHHHHHHHHHHHHHHHHHHCT
T ss_pred CCCCCc-------------eEEecCCCeEeecCCCCccccccccccccccCCCeeeeecCHHHHHHHHHHHHHHHHHHCC
Confidence 999986 99999999999987533211 122456899999999999999999999999999
Q ss_pred CCCHHHHHHHHHccccccCCCCCcccccCCCCCccccccccCCCCCccCccccCccCcCCCCe
Q 044171 609 KWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGFINPARAIDPGL 671 (813)
Q Consensus 609 ~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaG~vd~~~A~~~~l 671 (813)
+|++.+||++|++||+++...+ .++.||||+||+.+|++..+
T Consensus 400 ~lt~~~v~~~L~~tA~~~~~~g---------------------~~~~~G~G~vna~~Av~~~~ 441 (671)
T d1r6va_ 400 NAKPWQIRKLLENTAFDFNGNG---------------------WDHDTGYGLVKLDAALQGPL 441 (671)
T ss_dssp TCCHHHHHHHHHHHCBCSSSSS---------------------CBTTTBTCBCCHHHHHHCCC
T ss_pred CCCHHHHHHHHHhhCccCCCCC---------------------CCCCcccChhCHHHHhhCcC
Confidence 9999999999999998775332 23589999999999997544
|
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Probab=100.00 E-value=1.1e-48 Score=440.66 Aligned_cols=379 Identities=24% Similarity=0.301 Sum_probs=237.4
Q ss_pred CCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCCCCCCCCCCC
Q 044171 142 FSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYASP 221 (813)
Q Consensus 142 ~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~ 221 (813)
.+|+||+|||||||||++||+|.++. +.++++.. ..+...+
T Consensus 19 ~~G~gv~VaviDtGid~~Hp~~~~~~-----------------------------~~~~~~~~----------~~~~~~~ 59 (435)
T d1v6ca_ 19 SQAGNRTICIIDSGYDRSHNDLNANN-----------------------------VTGTNNSG----------TGNWYQP 59 (435)
T ss_dssp TTGGGCEEEEEESCCCTTSTTTTTSE-----------------------------EEECCCTT----------SCCTTCC
T ss_pred cCCCCcEEEEEcCCCCCCChhhccCe-----------------------------eeeeccCC----------CCCCCCC
Confidence 58999999999999999999998642 22222221 1123456
Q ss_pred CCCCCCccccccccccCCCccceeccccccccccccc--CccEEEEEEeeCCC-CCHHHHHHHHHHHHh-CCCcEEEEcc
Q 044171 222 FDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAP--GARIAVYKALYTFG-GYMADVVAAVDQAVE-DGVDIISLSV 297 (813)
Q Consensus 222 ~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp--~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~-~g~~VIn~S~ 297 (813)
.|++||||||||||||+.+. ..+.|||| +++|+.+|++.... +...++++||+++++ .+++|||+||
T Consensus 60 ~d~~gHGThvAgiiag~~~~---------~g~~GvAp~~~~~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~vin~S~ 130 (435)
T d1v6ca_ 60 GNNNAHGTHVAGTIAAIANN---------EGVVGVMPNQNANIHIVKVFNEAGWGYSSSLVAAIDTCVNSGGANVVTMSL 130 (435)
T ss_dssp CSSCCHHHHHHHHHHCCCSS---------SBCCCSSCSSCSEEEEEECEETTEECCSSCHHHHHHHHHHTTCCSEEEECC
T ss_pred CCCCCcHHHHHHHHhccCCC---------CceEEEecccCceeeeeecccccccchhhhhhhHHHHHhhcccceEEeccc
Confidence 78999999999999997532 24689999 89999999998755 667789999999996 5999999999
Q ss_pred CCCCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCCCCCCCceEEEeecccCccccceeeecCCcEEEee--
Q 044171 298 GPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSSSILSFSPWITSIAASITDRKYNNTIKLANGHSFSGI-- 375 (813)
Q Consensus 298 G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~-- 375 (813)
|.... ...+..+++.+.++|+++|+||||+|....++++..+++|+|||++.+.....+..++....+...
T Consensus 131 g~~~~-------~~~~~~a~~~~~~~g~~~v~aaGN~g~~~~~~p~~~~~vi~Vga~~~~~~~~~~s~~g~~vdv~apG~ 203 (435)
T d1v6ca_ 131 GGSGS-------TTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGE 203 (435)
T ss_dssp CBSCC-------BHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCCCSSEEEEEECS
T ss_pred CCCCC-------CHHHHhhhhhccccceEEEEeccCCCCCCcccCccCCCceEEEEecCCCCcccccCCCCceEEeeccc
Confidence 97543 245667888899999999999999999888899999999999999877654443333322222110
Q ss_pred ecC-CCCCCCceeeeEEeccc-ccC--cccccccccccCCCC-------------------CCcCcccccceEEEEeecc
Q 044171 376 GLA-PPTLGRVYYPLAAAADV-CHR--NVSTGIFSLESCQYP-------------------ELFIPALVRGKLIICTYSF 432 (813)
Q Consensus 376 ~~~-~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~c~~~-------------------~~~~~~~~~Gkivl~~~~~ 432 (813)
.+. ....+...+........ ... ...........|... ..+......+++.++.+..
T Consensus 204 ~i~st~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (435)
T d1v6ca_ 204 AILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANKICLVERVG 283 (435)
T ss_dssp SEEEECSTTCEEEEEEEETTEECGGGCCEECEEEEECSSSEEECCCCCEEEEEEEEEEEETTEEECCCCTTEEEEEECCS
T ss_pred ceeeeeecCCCcccccccCCceeeccccccccccccccccccccceeccccceEEEEecCCceeeccccccccceeeccC
Confidence 000 00000000000000000 000 000000000001000 1111223344444444421
Q ss_pred CCCCCchhHHHHHHHHHhcCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeee
Q 044171 433 DFENDDATIATVADNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFH 512 (813)
Q Consensus 433 ~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~ 512 (813)
... ...........+...++.+++.+
T Consensus 284 ~~~-~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------------- 309 (435)
T d1v6ca_ 284 NQG-SSYPEINSTKACKTAGAKGIIVY----------------------------------------------------- 309 (435)
T ss_dssp CSS-SSCTHHHHHHHHHHTTCSEEEEE-----------------------------------------------------
T ss_pred Ccc-ccceeeeeceeecccCCcceEEe-----------------------------------------------------
Confidence 111 11112222233333333333333
Q ss_pred eeEEEccCeeeeecCCCCeeeecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCC-------CCCCCCccee
Q 044171 513 ARARILDGRRAIYHGQAPVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGD-------PNLKGRNFAL 585 (813)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~-------~~~~~~~y~~ 585 (813)
+++.+|.... ...+..||||.+||..|.++........ ....+..|..
T Consensus 310 ----------------------~~~~~~~~~~---~~~~~~~~di~aPg~~i~~a~g~~~~~~~~~~~~~~~~~~~~y~~ 364 (435)
T d1v6ca_ 310 ----------------------SNSALPGLQN---PFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEY 364 (435)
T ss_dssp ----------------------CCSSSCSCCC---CEEECTTCCCCSCEEEECHHHHHHHGGGTTSEEEEEEEEEESEEE
T ss_pred ----------------------ccCCCCCcCC---ccccccCCceEEEEEEeccccccccccccCCcceecCCCCCCeeE
Confidence 2333332210 0114689999999998876532100000 0012347999
Q ss_pred eeccCChhhHHHHHHHHHHHhCCCCCHHHHHHHHHccccccCCCCCcccccCCCCCccccccccCCCCCccCccccCccC
Q 044171 586 LSGTSMATPHIAGVAALIKQRHPKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGFINPAR 665 (813)
Q Consensus 586 ~sGTSMAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaG~vd~~~ 665 (813)
|||||||||||||++|||+|++|+|+++|||++||+||+++.. ++++++||+|+||+.+
T Consensus 365 ~sGTSMAaP~VAG~aALl~q~~P~~s~~~vk~~L~~TA~~~~~---------------------~~~~~~~G~G~vn~~~ 423 (435)
T d1v6ca_ 365 YNGTSMATPHVSGVATLVWSYHPECSASQVRAALNATADDLSV---------------------AGRDNQTGYGMINAVA 423 (435)
T ss_dssp ECSHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHSBCCSS---------------------SSCBTTTBTCBCCHHH
T ss_pred EccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCcccCC---------------------CCCCCCcccceecHHH
Confidence 9999999999999999999999999999999999999987642 3345689999999999
Q ss_pred cCCCCeeeecchhhHHHhhcc
Q 044171 666 AIDPGLIFNAHFQEYVQFLCA 686 (813)
Q Consensus 666 A~~~~lv~~~~~~~~~~~~~~ 686 (813)
|+ +|+...|.
T Consensus 424 A~-----------~~l~~~~~ 433 (435)
T d1v6ca_ 424 AK-----------AYLDESCT 433 (435)
T ss_dssp HH-----------HHHHHCTT
T ss_pred HH-----------HHHHhcCC
Confidence 95 56766664
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Probab=100.00 E-value=2.8e-48 Score=410.55 Aligned_cols=266 Identities=31% Similarity=0.445 Sum_probs=213.5
Q ss_pred CCCcccCCCCCCCCCCCCCCCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEE
Q 044171 122 HTPEFLGIPVGVWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQY 201 (813)
Q Consensus 122 ~~~~~~~~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~ 201 (813)
+..+.++++. +|+. +++|+||+|||||||||++||+|.++ ++..++
T Consensus 13 w~l~~i~~~~-aw~~----~~~G~gv~VaviDsGi~~~h~~l~~~-----------------------------~~~~~~ 58 (280)
T d1dbia_ 13 YGPQNTYTDY-AWDV----TKGSSGQEIAVIDTGVDYTHPDLDGK-----------------------------VIKGYD 58 (280)
T ss_dssp CTTGGGTHHH-HTTT----CCCCTTCEEEEEESCCCTTSTTTTTT-----------------------------EEEEEE
T ss_pred cChhhCCHHH-HHhc----cCCCCCeEEEEEccCcCCCChhhcCC-----------------------------eeeccc
Confidence 5556666655 8887 78999999999999999999999863 445555
Q ss_pred chhhhhhcCCCCCCCCCCCCCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-CCHHHHHH
Q 044171 202 FARAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-GYMADVVA 280 (813)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-~~~~~i~~ 280 (813)
|... ...+.|.++|||||||+|++.... ...+.||||+|+|+.+|+++..+ +..+++++
T Consensus 59 ~~~~------------~~~~~d~~~HGT~vag~i~~~~~~--------~~~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~ 118 (280)
T d1dbia_ 59 FVDN------------DYDPMDLNNHGTHVAGIAAAETNN--------ATGIAGMAPNTRILAVRALDRNGSGTLSDIAD 118 (280)
T ss_dssp TTTT------------BSCCCCSSSHHHHHHHHHHCCCSS--------SSSCCCSSSSCEEEEEECCCTTSCCCHHHHHH
T ss_pred ccCC------------CCccccccccccceeEeeeccccC--------CCceeEEeccCEEEEEEEeCCCCCcCHHHHHH
Confidence 5432 144668899999999999987532 24468999999999999998876 78899999
Q ss_pred HHHHHHhCCCcEEEEccCCCCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCCCCCCCceEEEeecccCccc
Q 044171 281 AVDQAVEDGVDIISLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSSSILSFSPWITSIAASITDRKY 360 (813)
Q Consensus 281 ai~~a~~~g~~VIn~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~vitVgA~~~~~~~ 360 (813)
||+|++++|++|||||||.... ......++..+.++|+++|+||||+|......|+..+++|+|||.+.+
T Consensus 119 ai~~a~~~g~~iin~S~g~~~~-------~~~~~~a~~~a~~~gilvv~aaGn~g~~~~~~Pa~~~~vi~Vga~~~~--- 188 (280)
T d1dbia_ 119 AIIYAADSGAEVINLSLGCDCH-------TTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQY--- 188 (280)
T ss_dssp HHHHHHHTTCSEEEECCSSCCC-------CHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEECTT---
T ss_pred HHHHHHHcCCcEeecccccccc-------chhHHHHHHHHHHCCEEEEEecCccCCCCccCCCCCCCEEEEeeecCC---
Confidence 9999999999999999997542 245566778899999999999999998877888889999999984311
Q ss_pred cceeeecCCcEEEeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchh
Q 044171 361 NNTIKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDAT 440 (813)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~ 440 (813)
T Consensus 189 -------------------------------------------------------------------------------- 188 (280)
T d1dbia_ 189 -------------------------------------------------------------------------------- 188 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhcCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccC
Q 044171 441 IATVADNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDG 520 (813)
Q Consensus 441 ~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 520 (813)
T Consensus 189 -------------------------------------------------------------------------------- 188 (280)
T d1dbia_ 189 -------------------------------------------------------------------------------- 188 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeecCCCCeeeecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHH
Q 044171 521 RRAIYHGQAPVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVA 600 (813)
Q Consensus 521 ~~~~~~~~~~~~s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~a 600 (813)
+.++.||++||.. |++|||.+|+++.. +..|..++|||||||+|||++
T Consensus 189 ---------~~~a~~S~~g~~~-------------d~~apg~~i~~~~~----------~~~~~~~sGTS~AaP~vaG~~ 236 (280)
T d1dbia_ 189 ---------DRLASFSNYGTWV-------------DVVAPGVDIVSTIT----------GNRYAYMSGTSMASPHVAGLA 236 (280)
T ss_dssp ---------SCBCTTBCCSTTC-------------CEEEECSSEEEEET----------TTEEEEECSHHHHHHHHHHHH
T ss_pred ---------CCcCCcCCCCCcc-------------cccCCccceecccc----------CcceeccCCccccchHHHHHH
Confidence 2368899999876 89999999999874 458999999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHccccccCCCCCcccccCCCCCccccccccCCCCCccCccccCccCcCC
Q 044171 601 ALIKQRHPKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGFINPARAID 668 (813)
Q Consensus 601 ALl~q~~p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaG~vd~~~A~~ 668 (813)
|||+|. .+++.+||++|++||+++... ...||+|+||+++||+
T Consensus 237 All~~~--~~t~~~v~~~L~~tA~~~~~~-----------------------~~~~G~G~ln~~~Al~ 279 (280)
T d1dbia_ 237 ALLASQ--GRNNIEIRQAIEQTADKISGT-----------------------GTYFKYGRINSYNAVT 279 (280)
T ss_dssp HHHHHT--TCCHHHHHHHHHHTSBCCTTB-----------------------TTTBSSEECCHHHHHT
T ss_pred HHHhCC--CcCHHHHHHHHHHhCcCCCCC-----------------------CCcCCCCeEcHHHHcC
Confidence 999995 558999999999999876421 2379999999999985
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Probab=100.00 E-value=2.3e-47 Score=404.09 Aligned_cols=263 Identities=32% Similarity=0.514 Sum_probs=219.7
Q ss_pred CcccCCCCCCCCCCCCCCCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEch
Q 044171 124 PEFLGIPVGVWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFA 203 (813)
Q Consensus 124 ~~~~~~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~ 203 (813)
.+.+++++ +|+. .+|+||+|||||||||++||+|.++ ++..++|.
T Consensus 15 l~~i~a~~-aw~~-----~tG~Gv~VaViDsGi~~~H~~~~~~-----------------------------~~~~~~~~ 59 (279)
T d1thma_ 15 PQKIQAPQ-AWDI-----AEGSGAKIAIVDTGVQSNHPDLAGK-----------------------------VVGGWDFV 59 (279)
T ss_dssp HHHTTHHH-HHTT-----CCCTTCEEEEEESCCCTTCTTTTTT-----------------------------EEEEEETT
T ss_pred hhhCCHHH-HHhc-----cCCCCcEEEEEcCCCCCCChhhcCC-----------------------------eecccccc
Confidence 34556554 7876 3899999999999999999999863 55566665
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-CCHHHHHHHH
Q 044171 204 RAAIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-GYMADVVAAV 282 (813)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-~~~~~i~~ai 282 (813)
++ +..+.|..+|||||||+|++....+ ..+.|+||+|+|+.+|++...+ +...+++++|
T Consensus 60 ~~------------~~~~~d~~~HGT~vag~i~~~~~~~--------~~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai 119 (279)
T d1thma_ 60 DN------------DSTPQNGNGHGTHCAGIAAAVTNNS--------TGIAGTAPKASILAVRVLDNSGSGTWTAVANGI 119 (279)
T ss_dssp TT------------BSCCCCSSSHHHHHHHHHHCCCSSS--------SSCCCSSTTCEEEEEECSCTTSCCCHHHHHHHH
T ss_pred cc------------CcccccccccccccceeeeeccCCC--------ccccccCCcceEEEEEEEecCCCCcHHHHHHHH
Confidence 43 2456688999999999999875321 3468999999999999998876 7888999999
Q ss_pred HHHHhCCCcEEEEccCCCCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCCCCCCCceEEEeecccCccccc
Q 044171 283 DQAVEDGVDIISLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSSSILSFSPWITSIAASITDRKYNN 362 (813)
Q Consensus 283 ~~a~~~g~~VIn~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~vitVgA~~~~~~~~~ 362 (813)
+++.+.+++|+|||||.... ......++..+.++|+++|+|+||+|......++..+++|+|||++.+
T Consensus 120 ~~~~~~~~~i~n~S~G~~~~-------~~~~~~a~~~a~~~~~~~v~aagn~g~~~~~~~~~~~~vi~Vga~~~~----- 187 (279)
T d1thma_ 120 TYAADQGAKVISLSLGGTVG-------NSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQN----- 187 (279)
T ss_dssp HHHHHTTCSEEEECCCBSSC-------CHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEECTT-----
T ss_pred HHHhhcCCceeccccCcccc-------chhHHHHHHHHHhcCceEEEeccccccCCCccccccccccccccccCC-----
Confidence 99999999999999997542 245677888899999999999999999888888889999999985311
Q ss_pred eeeecCCcEEEeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHH
Q 044171 363 TIKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIA 442 (813)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~ 442 (813)
T Consensus 188 -------------------------------------------------------------------------------- 187 (279)
T d1thma_ 188 -------------------------------------------------------------------------------- 187 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCee
Q 044171 443 TVADNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRR 522 (813)
Q Consensus 443 ~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 522 (813)
T Consensus 188 -------------------------------------------------------------------------------- 187 (279)
T d1thma_ 188 -------------------------------------------------------------------------------- 187 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeecCCCCeeeecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHHHH
Q 044171 523 AIYHGQAPVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAAL 602 (813)
Q Consensus 523 ~~~~~~~~~~s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aAL 602 (813)
+.++.||++|++. ||+|||.+|+++.+ ++.|..++|||||||||||++||
T Consensus 188 -------~~~~~~S~~G~~~-------------di~Apg~~i~~~~~----------~~~~~~~sGTS~AaP~vaG~~AL 237 (279)
T d1thma_ 188 -------DNKSSFSTYGSWV-------------DVAAPGSSIYSTYP----------TSTYASLSGTSMATPHVAGVAGL 237 (279)
T ss_dssp -------SCBCTTCCCCTTC-------------CEEEECSSEEEEET----------TTEEEEECSHHHHHHHHHHHHHH
T ss_pred -------CCCccccCCCceE-------------EEeeeeeccccccC----------cccccccCCcchhhHHHHHHHHH
Confidence 2368899999986 89999999999984 45899999999999999999999
Q ss_pred HHHhCCCCCHHHHHHHHHccccccCCCCCcccccCCCCCccccccccCCCCCccCccccCccCcCC
Q 044171 603 IKQRHPKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGFINPARAID 668 (813)
Q Consensus 603 l~q~~p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaG~vd~~~A~~ 668 (813)
|+|++| ++.+||++|++||+++.. .+..||+|+||+.+|++
T Consensus 238 l~~~~~--s~~~i~~~L~~tA~~~~g-----------------------~~~~~G~G~vn~~~Av~ 278 (279)
T d1thma_ 238 LASQGR--SASNIRAAIENTADKISG-----------------------TGTYWAKGRVNAYKAVQ 278 (279)
T ss_dssp HHTTTC--CHHHHHHHHHHTCBCCTT-----------------------BTTTBSSEECCHHHHHH
T ss_pred HhcCCc--CHHHHHHHHHhhCccCCC-----------------------CCCcceeeeEcHHHhhC
Confidence 999766 799999999999987632 12379999999999974
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Probab=100.00 E-value=5.5e-47 Score=400.05 Aligned_cols=260 Identities=32% Similarity=0.525 Sum_probs=212.0
Q ss_pred ccCCCCCCCCCCCCCCCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhh
Q 044171 126 FLGIPVGVWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARA 205 (813)
Q Consensus 126 ~~~~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~ 205 (813)
.++++. +|.. +++|+||+|||||||||++||+|+. ..+++|..+
T Consensus 10 ~i~~~~-~~~~----g~tG~gv~VaViDtGv~~~Hp~l~~-------------------------------~~~~~~~~~ 53 (274)
T d1r0re_ 10 LIKADK-VQAQ----GFKGANVKVAVLDTGIQASHPDLNV-------------------------------VGGASFVAG 53 (274)
T ss_dssp HTTHHH-HHHH----TCSCTTCEEEEEESCCCTTCTTCCE-------------------------------EEEEECSTT
T ss_pred hcChHH-HHHc----CCCCCCeEEEEECCCCCCCChhhcc-------------------------------cCCccccCC
Confidence 344443 6766 7999999999999999999999962 233444332
Q ss_pred hhhcCCCCCCCCCCCCCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-CCHHHHHHHHHH
Q 044171 206 AIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-GYMADVVAAVDQ 284 (813)
Q Consensus 206 ~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-~~~~~i~~ai~~ 284 (813)
...+.|.++|||||||||++.... ..+.|+||+|+|+.+|+++..+ +..+++++++++
T Consensus 54 ------------~~~~~d~~gHGT~vAgii~~~~~~---------~~~~gvap~a~i~~~~~~~~~~~~~~~~i~~ai~~ 112 (274)
T d1r0re_ 54 ------------EAYNTDGNGHGTHVAGTVAALDNT---------TGVLGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEW 112 (274)
T ss_dssp ------------CCTTCCSSSHHHHHHHHHHCCSSS---------SBCCCSSTTSEEEEEECSCTTSEECHHHHHHHHHH
T ss_pred ------------CCCCCCcccccccccccccccccc---------ccccccCCCcEEEEEEEeCCCCCcCHHHHHHHHHH
Confidence 134557889999999999987532 2357999999999999998877 778899999999
Q ss_pred HHhCCCcEEEEccCCCCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCC----CCCCCCCCceEEEeecccCccc
Q 044171 285 AVEDGVDIISLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSS----SSILSFSPWITSIAASITDRKY 360 (813)
Q Consensus 285 a~~~g~~VIn~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~----~~~~~~~~~vitVgA~~~~~~~ 360 (813)
+.+++++|+|+|||..... ........++.++++++|+||||+|... ...|+..+++|+|||++.+
T Consensus 113 a~~~~~~i~n~S~~~~~~~-------~~~~~~~~~a~~~~~l~V~aaGN~g~~~~~~~~~~pa~~~~vi~Vga~~~~--- 182 (274)
T d1r0re_ 113 ATTNGMDVINMSLGGASGS-------TAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDSN--- 182 (274)
T ss_dssp HHHTTCSEEEECEEBSSCC-------HHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEECTT---
T ss_pred HHhcCCceeccccccccch-------hhhhHHHHHHhhCceEEEeeccCCCCCCCcccccccccCCCEEEEEeECCC---
Confidence 9999999999999975432 4456667788899999999999998653 2345677899999984311
Q ss_pred cceeeecCCcEEEeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchh
Q 044171 361 NNTIKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDAT 440 (813)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~ 440 (813)
T Consensus 183 -------------------------------------------------------------------------------- 182 (274)
T d1r0re_ 183 -------------------------------------------------------------------------------- 182 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhcCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccC
Q 044171 441 IATVADNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDG 520 (813)
Q Consensus 441 ~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 520 (813)
T Consensus 183 -------------------------------------------------------------------------------- 182 (274)
T d1r0re_ 183 -------------------------------------------------------------------------------- 182 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeecCCCCeeeecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHH
Q 044171 521 RRAIYHGQAPVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVA 600 (813)
Q Consensus 521 ~~~~~~~~~~~~s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~a 600 (813)
+.++.||++||.+ ||+|||++|+++.+ .+.|..++|||||||+|||++
T Consensus 183 ---------~~~~~~s~~g~~~-------------di~APG~~i~~~~~----------~~~~~~~sGTS~AaP~VaG~~ 230 (274)
T d1r0re_ 183 ---------SNRASFSSVGAEL-------------EVMAPGAGVYSTYP----------TNTYATLNGTSMASPHVAGAA 230 (274)
T ss_dssp ---------SCBCTTCCCSTTE-------------EEEEECSSEEEEET----------TTEEEEECSHHHHHHHHHHHH
T ss_pred ---------CCcccccCCCCCE-------------EEEecCCCcccccC----------CCCeEeecCCchhHHHHHHHH
Confidence 2367889999765 99999999999974 458999999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHccccccCCCCCcccccCCCCCccccccccCCCCCccCccccCccCcCC
Q 044171 601 ALIKQRHPKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGFINPARAID 668 (813)
Q Consensus 601 ALl~q~~p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaG~vd~~~A~~ 668 (813)
|||+|++|+|++++||++|++||+++.. .+.||+|++|+.+|++
T Consensus 231 All~~~~p~lt~~~i~~~L~~tA~~~~~------------------------~~~~G~G~ln~~~A~~ 274 (274)
T d1r0re_ 231 ALILSKHPNLSASQVRNRLSSTATYLGS------------------------SFYYGKGLINVEAAAQ 274 (274)
T ss_dssp HHHHHHSTTCCHHHHHHHHHHTCBCCSC------------------------HHHHTTCBCCHHHHTC
T ss_pred HHHHHHCCCCCHHHHHHHHHhhCccCCC------------------------CCceEcCeecHHHhcC
Confidence 9999999999999999999999986531 2379999999999985
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Probab=100.00 E-value=1.1e-46 Score=399.04 Aligned_cols=262 Identities=31% Similarity=0.507 Sum_probs=212.9
Q ss_pred ccCCCCCCCCCCCCCCCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhh
Q 044171 126 FLGIPVGVWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARA 205 (813)
Q Consensus 126 ~~~~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~ 205 (813)
.++++. +|+. +++|+||+|||||||||++||+|+.. ..+++...
T Consensus 10 ~i~a~~-aw~~----g~tG~Gv~IaviDtGv~~~Hp~l~~~-------------------------------~~~~~~~~ 53 (281)
T d1to2e_ 10 QIKAPA-LHSQ----GYTGSNVKVAVIDSGIDSSHPDLKVA-------------------------------GGASMVPS 53 (281)
T ss_dssp HTTHHH-HHHH----TCSCTTCEEEEEESCCCTTCTTCCEE-------------------------------EEEECCTT
T ss_pred HhCcHH-HHHC----CCCCCCeEEEEECCCCCCCChhhhhc-------------------------------CCccccCC
Confidence 345444 7766 79999999999999999999999742 22233211
Q ss_pred hhhcCCCCCCCCCCCCCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-CCHHHHHHHHHH
Q 044171 206 AIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-GYMADVVAAVDQ 284 (813)
Q Consensus 206 ~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-~~~~~i~~ai~~ 284 (813)
+.....+.++|||||||||+|.... ....|+||+|+|+.+|+++.++ +..++++++|+|
T Consensus 54 -----------~~~~~~~~~~HGT~vAgiiag~~~~---------~~~~giAp~a~l~~~kv~~~~~~~~~~~~~~ai~~ 113 (281)
T d1to2e_ 54 -----------ETNPFQDNNSHGTHVAGTVAALNNS---------IGVLGVAPSASLYAVKVLGADGSGQYSWIINGIEW 113 (281)
T ss_dssp -----------CCCTTCCSSSHHHHHHHHHHCCSSS---------SSBCCSSTTSEEEEEECSCTTSEECHHHHHHHHHH
T ss_pred -----------CCCCCcCcCCCCceeecccccCCCC---------CCcceeecccEEEEEEEeCCCCCcCHHHHHHHHHH
Confidence 1112234679999999999987431 2357999999999999998877 778899999999
Q ss_pred HHhCCCcEEEEccCCCCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCC----CCCCCCCCceEEEeecccCccc
Q 044171 285 AVEDGVDIISLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSS----SSILSFSPWITSIAASITDRKY 360 (813)
Q Consensus 285 a~~~g~~VIn~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~----~~~~~~~~~vitVgA~~~~~~~ 360 (813)
+++.+++|||+|||... ....+..+++.+.++|+++|+||||+|... ...|+..+++|+|||++.+
T Consensus 114 a~~~~~~v~n~S~g~~~-------~~~~~~~ai~~~~~~gil~V~aAGN~g~~~~~~~~~~pa~~~~vi~Vga~~~~--- 183 (281)
T d1to2e_ 114 AIANNMDVINMSLGGPS-------GSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSS--- 183 (281)
T ss_dssp HHHTTCSEEEECEEBSC-------CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEECTT---
T ss_pred HHhccccccccccCCCc-------chHHHHHHHHHHHhcCCcceecccCcccCCCCCCccCCCCCCceEEEEeecCC---
Confidence 99999999999999753 235677888899999999999999998753 2346678899999984311
Q ss_pred cceeeecCCcEEEeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchh
Q 044171 361 NNTIKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDAT 440 (813)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~ 440 (813)
T Consensus 184 -------------------------------------------------------------------------------- 183 (281)
T d1to2e_ 184 -------------------------------------------------------------------------------- 183 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhcCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccC
Q 044171 441 IATVADNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDG 520 (813)
Q Consensus 441 ~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 520 (813)
T Consensus 184 -------------------------------------------------------------------------------- 183 (281)
T d1to2e_ 184 -------------------------------------------------------------------------------- 183 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeecCCCCeeeecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHH
Q 044171 521 RRAIYHGQAPVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVA 600 (813)
Q Consensus 521 ~~~~~~~~~~~~s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~a 600 (813)
+.++.||++||.. |++|||.+|+++.+ ++.|..++|||||||+|||++
T Consensus 184 ---------~~~~~~S~~G~~~-------------d~~apG~~i~s~~~----------~~~~~~~~GTS~Aap~vaG~~ 231 (281)
T d1to2e_ 184 ---------NQRASFSSVGPEL-------------DVMAPGVSIQSTLP----------GNKYGAYNGTSMASPHVAGAA 231 (281)
T ss_dssp ---------SCBCTTCCCSTTC-------------CEEEECSSEEEEET----------TTEEEEECBHHHHHHHHHHHH
T ss_pred ---------CCCCcccCCCCCc-------------cccCCCCCceeecC----------CCeeEcccCcchhHHHHHHHH
Confidence 2367899999876 89999999999974 458999999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHccccccCCCCCcccccCCCCCccccccccCCCCCccCccccCccCcCCC
Q 044171 601 ALIKQRHPKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGFINPARAIDP 669 (813)
Q Consensus 601 ALl~q~~p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaG~vd~~~A~~~ 669 (813)
|||+|++|+|++++||++|++||+++.. ...||+|++|+.+|++.
T Consensus 232 All~~~~p~lt~~~i~~~L~~tA~~~~~------------------------~~~~G~G~ld~~~A~~~ 276 (281)
T d1to2e_ 232 ALILSKHPNWTNTQVRSSLENTTTKLGD------------------------SFYYGKGLINVQAAAQH 276 (281)
T ss_dssp HHHHHHSTTCCHHHHHHHHHTTCBCCSC------------------------HHHHTTCBCCHHHHTSS
T ss_pred HHHHHHCCCCCHHHHHHHHHhhCccCCC------------------------CCCcccCcccHHHHHhh
Confidence 9999999999999999999999987631 12699999999999984
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Probab=100.00 E-value=2e-46 Score=394.54 Aligned_cols=259 Identities=33% Similarity=0.517 Sum_probs=214.9
Q ss_pred ccCCCCCCCCCCCCCCCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhh
Q 044171 126 FLGIPVGVWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARA 205 (813)
Q Consensus 126 ~~~~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~ 205 (813)
.++++. +|+. +++|+||+||||||||+ +||+|... ..++|..+
T Consensus 10 ~i~~~~-aw~~----g~tG~gv~V~ViDsGv~-~h~~l~~~-------------------------------~~~~~~~~ 52 (269)
T d1gcia_ 10 RVQAPA-AHNR----GLTGSGVKVAVLDTGIS-THPDLNIR-------------------------------GGASFVPG 52 (269)
T ss_dssp HTTHHH-HHHT----TCSCTTCEEEEEESCCC-CCTTCCEE-------------------------------EEEECSTT
T ss_pred HhCcHH-HHhC----CCCCCCeEEEEECCCCC-CCcccCcc-------------------------------ccccccCC
Confidence 345444 7766 79999999999999998 89999632 22333322
Q ss_pred hhhcCCCCCCCCCCCCCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-CCHHHHHHHHHH
Q 044171 206 AIAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-GYMADVVAAVDQ 284 (813)
Q Consensus 206 ~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-~~~~~i~~ai~~ 284 (813)
...+.|.++|||||||||++..+. ....|+||+|+|+.+|++...+ +....+.+++++
T Consensus 53 ------------~~~~~d~~~HGT~vAgii~~~~~~---------~~~~giap~a~i~~~~v~~~~~~~~~~~~~~ai~~ 111 (269)
T d1gcia_ 53 ------------EPSTQDGNGHGTHVAGTIAALNNS---------IGVLGVAPSAELYAVKVLGASGSGSVSSIAQGLEW 111 (269)
T ss_dssp ------------CCSCSCSSSHHHHHHHHHHCCCSS---------SBCCCSSTTCEEEEEECBCTTSCBCHHHHHHHHHH
T ss_pred ------------CCCccccchhhheecccccccCCC---------ccccccCCceEEEEEEEecCCCCccHHHHHHHHHH
Confidence 134567889999999999987532 3357999999999999998876 777889999999
Q ss_pred HHhCCCcEEEEccCCCCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCCCCCCCceEEEeecccCcccccee
Q 044171 285 AVEDGVDIISLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSSSILSFSPWITSIAASITDRKYNNTI 364 (813)
Q Consensus 285 a~~~g~~VIn~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~vitVgA~~~~~~~~~~~ 364 (813)
+...++++||+|||..... .....++..+.++|+++|+||||+|.....+|+..+++|+||+++.+
T Consensus 112 ~~~~~~~~in~s~g~~~~~-------~~~~~a~~~a~~~gilvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~------- 177 (269)
T d1gcia_ 112 AGNNGMHVANLSLGSPSPS-------ATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQN------- 177 (269)
T ss_dssp HHHTTCSEEEECCCBSSCC-------HHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECTT-------
T ss_pred HHhcccccccccccccccc-------chHHHHHHhhccCceEEEeccCCCCCCCccCccccCCceEEEEEccC-------
Confidence 9999999999999975422 44566778889999999999999998888888999999999985311
Q ss_pred eecCCcEEEeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHH
Q 044171 365 KLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIATV 444 (813)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~ 444 (813)
T Consensus 178 -------------------------------------------------------------------------------- 177 (269)
T d1gcia_ 178 -------------------------------------------------------------------------------- 177 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhcCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeeee
Q 044171 445 ADNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAI 524 (813)
Q Consensus 445 ~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 524 (813)
T Consensus 178 -------------------------------------------------------------------------------- 177 (269)
T d1gcia_ 178 -------------------------------------------------------------------------------- 177 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCCCeeeecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHHHHHH
Q 044171 525 YHGQAPVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIK 604 (813)
Q Consensus 525 ~~~~~~~~s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~ 604 (813)
+.++.||++||.. ||+|||.++.++.+ ++.|..++|||||||+|||++|||+
T Consensus 178 -----~~~~~~S~~G~~~-------------di~Apg~~~~~~~~----------~~~~~~~sGTS~AaP~vaG~aAll~ 229 (269)
T d1gcia_ 178 -----NNRASFSQYGAGL-------------DIVAPGVNVQSTYP----------GSTYASLNGTSMATPHVAGAAALVK 229 (269)
T ss_dssp -----SCBCTTCCCSTTE-------------EEEEECSSEEEEET----------TTEEEEECSHHHHHHHHHHHHHHHH
T ss_pred -----CCcccccCCCCCc-------------eEEEeeecceeccC----------CCceEecCCcchHHHHHHHHHHHHH
Confidence 2367899999876 89999999999874 4589999999999999999999999
Q ss_pred HhCCCCCHHHHHHHHHccccccCCCCCcccccCCCCCccccccccCCCCCccCccccCccCcCC
Q 044171 605 QRHPKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGFINPARAID 668 (813)
Q Consensus 605 q~~p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaG~vd~~~A~~ 668 (813)
|++|++++++||++|++||.++.. +..||+|++|+++|++
T Consensus 230 ~~~p~lt~~~i~~~L~~tA~~~g~------------------------~~~~G~G~ln~~~Avk 269 (269)
T d1gcia_ 230 QKNPSWSNVQIRNHLKNTATSLGS------------------------TNLYGSGLVNAEAATR 269 (269)
T ss_dssp HHCTTCCHHHHHHHHHHTSBCCSC------------------------HHHHTTCBCCHHHHTC
T ss_pred HHCCCCCHHHHHHHHHhhCccCCC------------------------CCCcccCeEcHHHhcC
Confidence 999999999999999999987531 1269999999999985
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Probab=100.00 E-value=6.1e-42 Score=367.68 Aligned_cols=289 Identities=31% Similarity=0.416 Sum_probs=215.5
Q ss_pred cCCCCCCCCCCCCCCCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhh
Q 044171 127 LGIPVGVWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAA 206 (813)
Q Consensus 127 ~~~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~ 206 (813)
++++. +|.. +++|+||+|||||||||++||+|.++ +...++|....
T Consensus 13 i~~~~-aw~~----~~~G~gv~V~ViDsGv~~~Hp~~~~~-----------------------------~~~~~~~~~~~ 58 (309)
T d2ixta1 13 IYNND-TLTS----TTGGSGINIAVLDTGVNTSHPDLVNN-----------------------------VEQCKDFTGAT 58 (309)
T ss_dssp HHTCT-TCCC----CCCCTTCEEEEEESCCCTTCTTTTTT-----------------------------EEEEEESSSSS
T ss_pred cCChh-hhcc----CCCCCCeEEEEEccCCCCCChhHhcc-----------------------------ccccccccCCC
Confidence 44454 7876 78999999999999999999999864 44445554321
Q ss_pred hhcCCCCCCCCCCCCCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-CCHHHHHHHHHHH
Q 044171 207 IAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-GYMADVVAAVDQA 285 (813)
Q Consensus 207 ~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-~~~~~i~~ai~~a 285 (813)
........|.++|||||||||+|.... +...+.||||+|+|+.+|++...+ +..++++.+++++
T Consensus 59 --------~~~~~~~~d~~gHGT~VAgiiaa~~~~-------~~~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~~~a 123 (309)
T d2ixta1 59 --------TPINNSCTDRNGHGTHVAGTALADGGS-------DQAGIYGVAPDADLWAYKVLLDSGSGYSDDIAAAIRHA 123 (309)
T ss_dssp --------SCEETCCCCSSSHHHHHHHHHHCBCCT-------TSCSCBCSCTTSEEEEEECSCTTSCCCHHHHHHHHHHH
T ss_pred --------CCCCCCccccccccccccccccccccc-------cchhhhhhhhhccceeeeeecCCCCccccccccccccc
Confidence 111234557889999999999987422 223468999999999999998876 7788899999988
Q ss_pred HhC-----CCcEEEEccCCCCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCC--CCCCCCCceEEEeecccCc
Q 044171 286 VED-----GVDIISLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSS--SILSFSPWITSIAASITDR 358 (813)
Q Consensus 286 ~~~-----g~~VIn~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~--~~~~~~~~vitVgA~~~~~ 358 (813)
++. ...|+|+||+.... ......++..+.++|+++|+||||++.... ..|+..+++++|++.+...
T Consensus 124 ~~~~~~~~~~~v~~~s~~~~~~-------~~~~~~~~~~~~~~g~~~V~aaGn~~~~~~~~~~pa~~~~~~~v~~~~~~~ 196 (309)
T d2ixta1 124 ADQATATGTKTIISMSLGSSAN-------NSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQ 196 (309)
T ss_dssp HHHHHHHTCCEEEEECCCBSSC-------CHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEE
T ss_pred cccccccccccccccccccccc-------ccchhccccchhcCCceEEEEeccccccCCCcCCchhhhcccccccccccc
Confidence 874 34689999997532 245667778889999999999999986643 3456678888888754221
Q ss_pred cccceeeecCCcEEEeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCc
Q 044171 359 KYNNTIKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDD 438 (813)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~ 438 (813)
.....
T Consensus 197 ~~~~~--------------------------------------------------------------------------- 201 (309)
T d2ixta1 197 QNGTY--------------------------------------------------------------------------- 201 (309)
T ss_dssp ETTEE---------------------------------------------------------------------------
T ss_pred ccccc---------------------------------------------------------------------------
Confidence 10000
Q ss_pred hhHHHHHHHHHhcCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEc
Q 044171 439 ATIATVADNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARIL 518 (813)
Q Consensus 439 ~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 518 (813)
T Consensus 202 -------------------------------------------------------------------------------- 201 (309)
T d2ixta1 202 -------------------------------------------------------------------------------- 201 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCeeeeecCCCCeeeecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHH
Q 044171 519 DGRRAIYHGQAPVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAG 598 (813)
Q Consensus 519 ~~~~~~~~~~~~~~s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG 598 (813)
..........++++|+... ...||||+|||.+|+++.+ +..|..++|||||||+|||
T Consensus 202 ------~~~~~~~~~~~~~~~~~~~-------~~~~vdi~apG~~~~s~~~----------~~~~~~~sGTS~AaP~VaG 258 (309)
T d2ixta1 202 ------RVADYSSRGYISTAGDYVI-------QEGDIEISAPGSSVYSTWY----------NGGYNTISGTSMATPHVSG 258 (309)
T ss_dssp ------EECTTSCCCCTTTTTSSSC-------CTTCCCEEEECSSEEEECT----------TSSEEEECSHHHHHHHHHH
T ss_pred ------ccccccccccccccccccc-------CCCcceeecCCCceeeecC----------CCcceeecCccchhHHHHH
Confidence 0000012345677777664 5789999999999999974 4589999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHccccccCCCCCcccccCCCCCccccccccCCCCCccCccccCc
Q 044171 599 VAALIKQRHPKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGFINP 663 (813)
Q Consensus 599 ~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaG~vd~ 663 (813)
++|||+|++|+|++++||++|++||++++..+.. ......++.+|+|++|+
T Consensus 259 ~~Ali~~~~p~lt~~~v~~~L~~tA~~~~~~~~~--------------g~~~~~~~~~g~G~~~v 309 (309)
T d2ixta1 259 LAAKIWAENPSLSNTQLRSNLQERAKSVDIKGGY--------------GAAIGDDYASGFGFARV 309 (309)
T ss_dssp HHHHHHHHSTTCCHHHHHHHHHHHHHTSCCCBST--------------TCCSSSBTTTBTCBCCC
T ss_pred HHHHHHHHCCCCCHHHHHHHHHhhCccCCCCCCc--------------CCccCCCcccCCCEecC
Confidence 9999999999999999999999999987644321 12344566889999875
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Probab=100.00 E-value=2.7e-41 Score=357.04 Aligned_cols=222 Identities=29% Similarity=0.434 Sum_probs=182.2
Q ss_pred CCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCCCCCCCCCCC
Q 044171 142 FSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYASP 221 (813)
Q Consensus 142 ~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~ 221 (813)
.+|+||+|||||||||++||+|.++. .....+. ..+
T Consensus 28 ~tG~Gv~VaViDsGid~~Hpdf~g~~-----------------------------~~~~~~~---------------~~~ 63 (279)
T d2pwaa1 28 SAGQGSCVYVIDTGIEASHPEFEGRA-----------------------------QMVKTYY---------------YSS 63 (279)
T ss_dssp TTTTTEEEEEEESCCCTTCGGGTTCE-----------------------------EEEEESS---------------SCS
T ss_pred CCCCCeEEEEECcCCCCCChhhcCCc-----------------------------eeccCCC---------------CCc
Confidence 69999999999999999999998742 1111111 234
Q ss_pred CCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-CCHHHHHHHHHHHHhC-------CCcEE
Q 044171 222 FDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-GYMADVVAAVDQAVED-------GVDII 293 (813)
Q Consensus 222 ~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~-------g~~VI 293 (813)
.|.++|||||||||+|.. .|+||+|+|+.+|++.... ...+++..+++++... +++|+
T Consensus 64 ~d~~gHGT~VAgiia~~~--------------~G~a~~a~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 129 (279)
T d2pwaa1 64 RDGNGHGTHCAGTVGSRT--------------YGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGVVA 129 (279)
T ss_dssp SCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEEEE
T ss_pred ccccCccccccccccccc--------------cccCCCccccceeeecCCcccccccccchhheecccccccccccccce
Confidence 578899999999999863 5999999999999998765 6778889999998874 34599
Q ss_pred EEccCCCCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCC-CCCCCCCceEEEeecccCccccceeeecCCcEE
Q 044171 294 SLSVGPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSS-SILSFSPWITSIAASITDRKYNNTIKLANGHSF 372 (813)
Q Consensus 294 n~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~ 372 (813)
|+|||.. ..+.+..++.++.++|+++|+||||++.+.. ..|...+++|+|||++.+
T Consensus 130 n~s~g~~--------~~~~~~~~~~~~~~~gil~V~aaGN~~~~~~~~~p~~~~~vi~VgA~~~~--------------- 186 (279)
T d2pwaa1 130 SLSLGGG--------YSSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASDRY--------------- 186 (279)
T ss_dssp EECCCEE--------CCHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT---------------
T ss_pred eccCCCc--------cccccchhhhhhhhCCcEEEEeCccccccccccCCccCCceEEeeeEeec---------------
Confidence 9999964 2356778888999999999999999987643 356778899999984311
Q ss_pred EeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcC
Q 044171 373 SGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIE 452 (813)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~G 452 (813)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T d2pwaa1 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeeeeecCCCCee
Q 044171 453 AAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPVV 532 (813)
Q Consensus 453 a~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 532 (813)
+.+
T Consensus 187 -----------------------------------------------------------------------------g~~ 189 (279)
T d2pwaa1 187 -----------------------------------------------------------------------------DRR 189 (279)
T ss_dssp -----------------------------------------------------------------------------SBB
T ss_pred -----------------------------------------------------------------------------CCC
Confidence 236
Q ss_pred eecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHHHHHHHHHHhCCCCCH
Q 044171 533 ASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIAGVAALIKQRHPKWSP 612 (813)
Q Consensus 533 s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p~~s~ 612 (813)
+.||++||.. ||+|||.+|+++.+ ++.|..++|||||||+|||++|||+|++|.+++
T Consensus 190 ~~~S~~G~~~-------------dv~APG~~i~s~~~----------~~~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~ 246 (279)
T d2pwaa1 190 SSFSNYGSVL-------------DIFGPGTDILSTWI----------GGSTRSISGTSMATPHVAGLAAYLMTLGKTTAA 246 (279)
T ss_dssp CTTCCBSTTC-------------CEEEECSSEEEEET----------TTEEEEECSHHHHHHHHHHHHHHHHHTTSCCTT
T ss_pred ccccCCCCcc-------------cccccccccccccc----------CCcccCCCcchhHHHHHHHHHHHHHHhCCCChH
Confidence 8899999976 89999999999984 458999999999999999999999999999998
Q ss_pred HHHHHHHHccccc
Q 044171 613 AAITSAMMTSAEV 625 (813)
Q Consensus 613 ~~ik~~L~~TA~~ 625 (813)
+++|. |++||++
T Consensus 247 ~~~~~-ll~ta~~ 258 (279)
T d2pwaa1 247 SACRY-IADTANK 258 (279)
T ss_dssp THHHH-HHHHSEE
T ss_pred HHHHH-HHHhCcC
Confidence 88775 7778875
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Probab=100.00 E-value=5.9e-40 Score=353.52 Aligned_cols=288 Identities=25% Similarity=0.373 Sum_probs=213.6
Q ss_pred CCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCCCCCCCCCC
Q 044171 141 EFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYAS 220 (813)
Q Consensus 141 ~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~ 220 (813)
|++|+||+|||||||||++||+|..+.. .+.++...+++... .+
T Consensus 18 G~tG~Gv~VaIiDsGi~~~h~~~~~~~~-----------------------~~~~~~~~~~~~~~-------------~~ 61 (318)
T d1wmda2 18 GLYGQGQIVAVADTGLDTGRNDSSMHEA-----------------------FRGKITALYALGRT-------------NN 61 (318)
T ss_dssp CCSCTTCEEEEEESCCTTSCSSTTSCTT-----------------------TTTCEEEEEETTTT-------------TC
T ss_pred CccccCeEEEEEcCCcCCCCcccccCcc-----------------------cCCcEEeecCCCCC-------------CC
Confidence 7999999999999999999999986421 12345555554322 44
Q ss_pred CCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC---CCHHHHHHHHHHHHhCCCcEEEEcc
Q 044171 221 PFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG---GYMADVVAAVDQAVEDGVDIISLSV 297 (813)
Q Consensus 221 ~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g---~~~~~i~~ai~~a~~~g~~VIn~S~ 297 (813)
+.|..||||||||||+|+.. ...||||+|+|+.+|+++..+ .....+..+++++...+++|+|+||
T Consensus 62 ~~d~~gHGT~vAgiiag~~~-----------~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~ 130 (318)
T d1wmda2 62 ANDTNGHGTHVAGSVLGNGS-----------TNKGMAPQANLVFQSIMDSGGGLGGLPSNLQTLFSQAYSAGARIHTNSW 130 (318)
T ss_dssp CCCSSSHHHHHHHHHHCCSS-----------SSCCSSTTSEEEEEECCCTTSSCTTSCSSHHHHHHHHHHTTCSEEEECC
T ss_pred CCCCCCCCccceeecccccc-----------ccchhhhcccceeeeeeeecccccccchhhHHHHHHHHhcCCceeeccc
Confidence 56789999999999999742 247999999999999998765 3445578899999999999999999
Q ss_pred CCCCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCCC--CCCCceEEEeecccCccccceeeecCCcEEEee
Q 044171 298 GPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSSSIL--SFSPWITSIAASITDRKYNNTIKLANGHSFSGI 375 (813)
Q Consensus 298 G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~--~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~ 375 (813)
|...... .......+...+.++++++|+|+||.|....... ...+.++++.+.........
T Consensus 131 g~~~~~~----~~~~~~~~~~~~~~~~~~~v~aagn~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~------------- 193 (318)
T d1wmda2 131 GAAVNGA----YTTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSFG------------- 193 (318)
T ss_dssp CBCCTTC----CCHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGGGC-------------
T ss_pred ccccccc----cchhHHHHHHHHhhcceeeeeeeccccccccccccccccccccceeeccCcccccc-------------
Confidence 9764432 2345556667778999999999999997765433 34566777766432111000
Q ss_pred ecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceE
Q 044171 376 GLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAG 455 (813)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g 455 (813)
.
T Consensus 194 --------------------------------~----------------------------------------------- 194 (318)
T d1wmda2 194 --------------------------------S----------------------------------------------- 194 (318)
T ss_dssp --------------------------------G-----------------------------------------------
T ss_pred --------------------------------c-----------------------------------------------
Confidence 0
Q ss_pred EEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEEccCeeeeecCCCCeeeec
Q 044171 456 FILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARILDGRRAIYHGQAPVVASY 535 (813)
Q Consensus 456 ~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~s~F 535 (813)
.......+..+
T Consensus 195 ---------------------------------------------------------------------~~~~~~~~~~~ 205 (318)
T d1wmda2 195 ---------------------------------------------------------------------YADNINHVAQF 205 (318)
T ss_dssp ---------------------------------------------------------------------GGSCTTSBCTT
T ss_pred ---------------------------------------------------------------------ccccccccccc
Confidence 00011236778
Q ss_pred ccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCC--CCCCcceeeeccCChhhHHHHHHHHHHHhCC-----
Q 044171 536 SSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPN--LKGRNFALLSGTSMATPHIAGVAALIKQRHP----- 608 (813)
Q Consensus 536 SS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~--~~~~~y~~~sGTSMAaP~VAG~aALl~q~~p----- 608 (813)
|++||... ...|||++|||.+|+++.......... .....|..++|||||||||||++|||+|++|
T Consensus 206 s~~G~~~~-------~~~~~~~~a~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~~ALl~~~~p~~~~~ 278 (318)
T d1wmda2 206 SSRGPTKD-------GRIKPDVMAPGTFILSARSSLAPDSSFWANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGI 278 (318)
T ss_dssp SCCCCCTT-------SCCCCCEEEECSSEEEECCTTCCGGGSSEEEETTEEEECSHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred cccCCCcC-------CCcccceeecCceEEeccccccccCccccCCCcceeeccCcchhhHHHHHHHHHHHHHhHhhcCC
Confidence 99999876 479999999999999987654322110 1124688899999999999999999999754
Q ss_pred CCCHHHHHHHHHccccccCCCCCcccccCCCCCccccccccCCCCCccCccccCccCcCC
Q 044171 609 KWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGFINPARAID 668 (813)
Q Consensus 609 ~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaG~vd~~~A~~ 668 (813)
.+++.+||++|++||+++.. +.++..||||+||+.+||+
T Consensus 279 ~~~~~~i~~~l~~tA~~~~~---------------------~~~~~~~G~G~ld~~~Al~ 317 (318)
T d1wmda2 279 TPKPSLLKAALIAGAADIGL---------------------GYPNGNQGWGRVTLDKSLN 317 (318)
T ss_dssp CCCHHHHHHHHHHHCBCCSS---------------------CSSCTTTTTCBCCHHHHHT
T ss_pred CCCHHHHHHHHHhhCccCCC---------------------CCCCCCeeeceecHHHHhC
Confidence 57899999999999987643 2334579999999999986
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=5.1e-38 Score=340.66 Aligned_cols=174 Identities=24% Similarity=0.293 Sum_probs=115.5
Q ss_pred CCCCCCCCCCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCC
Q 044171 133 VWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDF 212 (813)
Q Consensus 133 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~ 212 (813)
+|+. +++|+||+|||||||||++||+|.++....+ .| ++.+. .
T Consensus 29 aw~~----g~~G~gv~VaViDtGv~~~Hpdl~~~~~~~~----~~-----------------------~~~~~------~ 71 (334)
T d1p8ja2 29 AWAQ----GFTGHGIVVSILDDGIEKNHPDLAGNYDPGA----SF-----------------------DVNDQ------D 71 (334)
T ss_dssp HHHT----TCSCTTCEEEEEEBCCCTTCTTTGGGBCGGG----CE-----------------------ETTTT------B
T ss_pred HHhc----CCCCCCeEEEEEccCCCCCChhHhhccccCC----Cc-----------------------cccCC------C
Confidence 6765 7999999999999999999999997532110 00 00000 0
Q ss_pred CCCCCCCCCCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCCCCHHHHHHHHHHHHh-CCCc
Q 044171 213 NSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFGGYMADVVAAVDQAVE-DGVD 291 (813)
Q Consensus 213 ~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g~~~~~i~~ai~~a~~-~g~~ 291 (813)
....+.....|.++|||||||||++....+ ....|+||+++++.+|+++. ...+.+.++.++++ .+++
T Consensus 72 ~~~~~~~~~~~~~gHGT~vAgiia~~~~n~--------~~~~g~a~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 140 (334)
T d1p8ja2 72 PDPQPRYTQMNDNRHGTRCAGEVAAVANNG--------VCGVGVAYNARIGGVRMLDG---EVTDAVEARSLGLNPNHIH 140 (334)
T ss_dssp SCCCCCCCTTCTTCHHHHHHHHHHCCSSSS--------SSCCCTTTTSEEEEEECSSS---CCCHHHHHHHHTSCTTTCC
T ss_pred CccccccccccCccchhhhhhhhhhccccc--------cccccccccccccchhhccc---cccchHHHHHHHhhhcCCc
Confidence 011122334578899999999999875422 23479999999999998764 34456677777765 6899
Q ss_pred EEEEccCCCCCCCCC-----hhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCCC----CCCCceEEEeec
Q 044171 292 IISLSVGPSAVPSGP-----AAFLNALEMELLFATKAGVLVVQAAGNSGPSSSSIL----SFSPWITSIAAS 354 (813)
Q Consensus 292 VIn~S~G~~~~~~~~-----~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~----~~~~~vitVgA~ 354 (813)
++|||||........ ......+..++..+.++|+++|+||||++....... ...+.+++|+++
T Consensus 141 ~~n~S~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvV~AaGN~~~~~~~~~~~~~~~~~~~~~v~~~ 212 (334)
T d1p8ja2 141 IYSASWGPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSA 212 (334)
T ss_dssp EEEECCBSCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEE
T ss_pred EEeCCCCCCCcCcccCCccchhhHHHHHHHHHHHhcCCceEEEecCCCCccCCCCCcccccccccccccccc
Confidence 999999975432111 112333455566777899999999999876543221 223455666653
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=7e-38 Score=340.37 Aligned_cols=292 Identities=21% Similarity=0.212 Sum_probs=199.7
Q ss_pred cCCCCCCCCCCCCCCCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhh
Q 044171 127 LGIPVGVWPTLGGAEFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAA 206 (813)
Q Consensus 127 ~~~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~ 206 (813)
+++++ +|.. +++|+||+|||||||||++||+|.++.... +.++|.+.
T Consensus 33 in~~~-aw~~----g~~G~gv~VaViDtGid~~Hp~l~~~~~~~---------------------------~~~~~~~~- 79 (339)
T d2id4a2 33 INVLD-LWYN----NITGAGVVAAIVDDGLDYENEDLKDNFCAE---------------------------GSWDFNDN- 79 (339)
T ss_dssp CCCHH-HHHT----TCSCTTCEEEEEESCCCTTSTTTTTTBCGG---------------------------GCEETTTT-
T ss_pred cCHHH-HHhc----CCCCCCcEEEEECcCcCCCChHHhcCcccc---------------------------cccccccC-
Confidence 34333 6765 799999999999999999999999753210 11223221
Q ss_pred hhcCCCCCCCCCCCCCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCCCCHHHHHHHHHHHH
Q 044171 207 IAYGDFNSTRDYASPFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFGGYMADVVAAVDQAV 286 (813)
Q Consensus 207 ~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g~~~~~i~~ai~~a~ 286 (813)
........++++|||||||+|+|..+.+ ..+.|+||+|+|+.++++.. .....++..++.+++
T Consensus 80 --------~~~~~~~~~~~~HGT~vag~iaa~~~~~--------~~~~Gvap~a~~~~~~~~~~-~~~~~~~~~~~~~~~ 142 (339)
T d2id4a2 80 --------TNLPKPRLSDDYHGTRCAGEIAAKKGNN--------FCGVGVGYNAKISGIRILSG-DITTEDEAASLIYGL 142 (339)
T ss_dssp --------BSCCCCCSTTTTHHHHHHHHHHCCSSSS--------SSCCCTTTTSEEEEEECTTS-CCCHHHHHHHTTTTT
T ss_pred --------CCccCCCcccccccceeeeccccccccc--------ccccccccccccceEEEeec-cccchHHHHHHHHHH
Confidence 1112334567899999999999875322 23579999999999998753 256667788888776
Q ss_pred hCCCcEEEEccCCCCCCCCC----hhhh-hHHHHHHHHHHhCCcEEEEecCCCCCCCCC--CCC--CCCceEEEeecccC
Q 044171 287 EDGVDIISLSVGPSAVPSGP----AAFL-NALEMELLFATKAGVLVVQAAGNSGPSSSS--ILS--FSPWITSIAASITD 357 (813)
Q Consensus 287 ~~g~~VIn~S~G~~~~~~~~----~~~~-~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~--~~~--~~~~vitVgA~~~~ 357 (813)
+. .+|+|+|||........ .... .....++..+..+|+++|+||||++..... ++. ..+.+++|++++.
T Consensus 143 ~~-~~v~~~s~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~i~v~AaGN~~~~~~~~~~~~~~~~~~~~~~~~~~~- 220 (339)
T d2id4a2 143 DV-NDIYSCSWGPADDGRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDH- 220 (339)
T ss_dssp TT-CSEEEECEESCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEECT-
T ss_pred hh-CCEEeccCCCCCCcccccCccchhHHHHHHHHHHHHhcCCcEEEecccCCccCCCccccccccccccccccccccc-
Confidence 65 59999999964322111 1122 233455566778999999999998754322 111 1233444443211
Q ss_pred ccccceeeecCCcEEEeeecCCCCCCCceeeeEEecccccCcccccccccccCCCCCCcCcccccceEEEEeeccCCCCC
Q 044171 358 RKYNNTIKLANGHSFSGIGLAPPTLGRVYYPLAAAADVCHRNVSTGIFSLESCQYPELFIPALVRGKLIICTYSFDFEND 437 (813)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g 437 (813)
T Consensus 221 -------------------------------------------------------------------------------- 220 (339)
T d2id4a2 221 -------------------------------------------------------------------------------- 220 (339)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhHHHHHHHHHhcCceEEEEEeCCCCCCCCCccccccCCcceEEEcccchhHHHHHHHhhcCccCCCCceeeeeeeEEE
Q 044171 438 DATIATVADNIKKIEAAGFILRMDPDQDFSPNKFKDMALDVPGIILNNMQSSMDLLEYYNSHTIKSRAGQAVVFHARARI 517 (813)
Q Consensus 438 ~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 517 (813)
T Consensus 221 -------------------------------------------------------------------------------- 220 (339)
T d2id4a2 221 -------------------------------------------------------------------------------- 220 (339)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCeeeeecCCCCeeeecccCCCCcCcccccCCCCCCCceecCCCcEEeccCCCCCCCCCCCCCcceeeeccCChhhHHH
Q 044171 518 LDGRRAIYHGQAPVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPSSEGDPNLKGRNFALLSGTSMATPHIA 597 (813)
Q Consensus 518 ~~~~~~~~~~~~~~~s~FSS~Gp~~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VA 597 (813)
.+..+.+|++|+.. ...++..+||..+.++.. .+..|..++||||||||||
T Consensus 221 -----------~g~~~~~s~~~~~~---------~~~~~~~~~g~~~~s~~~---------~~~~~~~~sGTS~AtP~va 271 (339)
T d2id4a2 221 -----------KDLHPPYSEGCSAV---------MAVTYSSGSGEYIHSSDI---------NGRCSNSHGGTSAAAPLAA 271 (339)
T ss_dssp -----------TSCCCTTCCCCTTE---------EEEEECSBTTBCEEEECS---------TTCEEEEECSHHHHHHHHH
T ss_pred -----------cccccccccccCcc---------ceeeeeeccccccceecc---------CCCccccCCCCcchHHHHH
Confidence 12345566666654 344578889999988764 3457899999999999999
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHccccccCCCCCcccccCCCCCccccccccCCCCCccCccccCccCcCC
Q 044171 598 GVAALIKQRHPKWSPAAITSAMMTSAEVTDHSGSPILAQDYSDSPILEHVLVHATPFDFGAGFINPARAID 668 (813)
Q Consensus 598 G~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaG~vd~~~A~~ 668 (813)
|++|||+|++|+|++.|||.+|+.||.+++.......... ...+..+..||||+||+.+||+
T Consensus 272 G~aALv~~~~P~lt~~~i~~~l~~tA~~~~~~~~~~~~~~---------~~~~~~~~~~G~G~ln~~~Av~ 333 (339)
T d2id4a2 272 GVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDS---------AMGKKYSHRYGFGKIDAHKLIE 333 (339)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHCBCCTTCGGGCCEEC---------SSSSEEBTTTBTCBCCHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHhCcccCCCCCcccccc---------CCCCCcCCCccchhhCHHHHHH
Confidence 9999999999999999999999999998754322110000 1223344579999999999986
|
| >d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]
Probab=99.96 E-value=5e-31 Score=287.67 Aligned_cols=164 Identities=27% Similarity=0.366 Sum_probs=112.1
Q ss_pred CCCCCCcEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCCceEEEEEchhhhhhcCCCCCCCCCCC
Q 044171 141 EFSGEGVVIGFIDTGINPEHPSFASHSFRGNQSISKFKGKCTTGNRFPSTACNSKIVGAQYFARAAIAYGDFNSTRDYAS 220 (813)
Q Consensus 141 ~~~G~gv~VaVIDtGid~~Hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~ 220 (813)
+++|+||+|||||||||++||||.+. |+.. + .......
T Consensus 20 G~tG~Gv~VaViDtGvd~~H~dl~~~----------~~~~---~-----------------------------~~~~~~~ 57 (357)
T d1t1ga_ 20 GLDGQGQCIAIIALGGGYDETSLAQY----------FASL---G-----------------------------VSAPQVV 57 (357)
T ss_dssp TCCCTTCEEEEEESSCCCCHHHHHHH----------HHHT---T-----------------------------CCCCCEE
T ss_pred CCCCCCCEEEEEEcCCCCCcHHHHHH----------Hhhc---C-----------------------------CCCCCCc
Confidence 79999999999999999999999852 1100 0 0000112
Q ss_pred CCCCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCCCCHHHHHHHHHHHH---hCCCcEEEEcc
Q 044171 221 PFDADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFGGYMADVVAAVDQAV---EDGVDIISLSV 297 (813)
Q Consensus 221 ~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g~~~~~i~~ai~~a~---~~g~~VIn~S~ 297 (813)
+.+.++|+|||+|++++...... .....+.||||+|+|+.+|+.... ...+.++++++ +++++||||||
T Consensus 58 ~~~~~g~~~~~~g~~~~~~~~~~----~d~~~~~GvAp~A~i~~~~~~~~~----~~~~~~i~~~~~~~~~~~~Vin~S~ 129 (357)
T d1t1ga_ 58 SVSVDGATNQPTGDPNGPDGEVE----LDIEVAGALAPGAKIAVYFAPNTD----AGFLNAITTAVHDPTHKPSIVSISW 129 (357)
T ss_dssp EEESTTCCCCCCSCTTSTHHHHH----HHHHHHHHHSTTSEEEEEECCSSH----HHHHHHHHHHHHCTTTCCSEEEECC
T ss_pred eeCCCCCCCCCCCcccccccccc----CCcccceeecccCeEEEEecccCC----CchHHHHHHHHHhhhcCCeEEeccc
Confidence 23567899999998776532110 011246899999999999987542 34455555555 46899999999
Q ss_pred CCCCCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCC--------CCCCCCCceEEEeecc
Q 044171 298 GPSAVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSS--------SILSFSPWITSIAASI 355 (813)
Q Consensus 298 G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~--------~~~~~~~~vitVgA~~ 355 (813)
|...... .......++.++..+..+|+++|+|+||+|.... ..+...+++++|++..
T Consensus 130 G~~~~~~-~~~~~~~~~~~~~~~~~~g~~vv~aagn~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 194 (357)
T d1t1ga_ 130 GGPEDSW-APASIAAMNRAFLDAAALGVTVLAAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTR 194 (357)
T ss_dssp CEEGGGS-CHHHHHHHHHHHHHHHHHTCEEEEECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEE
T ss_pred ccCcCcc-ccchHHHHHHhhhhhccCCcEEEEEeccCCcccccccccccccccccCCcceeeeeec
Confidence 9753221 1334566778888888999999999999985432 2234567888888754
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Probab=99.94 E-value=4.8e-29 Score=273.32 Aligned_cols=125 Identities=16% Similarity=0.134 Sum_probs=97.1
Q ss_pred CCCCCccccccccccCCCccceecccccccccccccCccEEEEEEeeCCC-CCHHHHHHHHHHHHh-CCCcEEEEccCCC
Q 044171 223 DADGHGSHTASTAAGNHRVPVIVSGFNYGYASGMAPGARIAVYKALYTFG-GYMADVVAAVDQAVE-DGVDIISLSVGPS 300 (813)
Q Consensus 223 d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~-~g~~VIn~S~G~~ 300 (813)
+..+||||+++++.+.... ..+.||||+|+|+.++++.+.+ ....+++++|+||++ ++++|||+|||..
T Consensus 66 ~~~~~~~~~~~~~e~~ld~---------~~~~gvAp~a~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~Vis~S~g~~ 136 (369)
T d1ga6a_ 66 SNGDYSDDQQGQGEWDLDS---------QSIVGSAGGAVQQLLFYMADQSASGNTGLTQAFNQAVSDNVAKVINVSLGWC 136 (369)
T ss_dssp TTSCCCBCHHHHHHHHHHH---------HHHHHHTTSCEEEEEEEEECTTSSTTHHHHHHHHHHHHHCCCSEEEECCCEE
T ss_pred CCCCCCCCCCcceeecccc---------ccccccccCceEEEEEEeCCCCCcchHHHHHHHHHHHHcCCCceeecccccc
Confidence 4678999999998775321 2367999999999999998876 777889999999986 5799999999974
Q ss_pred CCCCCChhhhhHHHHHHHHHHhCCcEEEEecCCCCCCCC-------------CCCCCCCceEEEeeccc
Q 044171 301 AVPSGPAAFLNALEMELLFATKAGVLVVQAAGNSGPSSS-------------SILSFSPWITSIAASIT 356 (813)
Q Consensus 301 ~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-------------~~~~~~~~vitVgA~~~ 356 (813)
..........+.+++++++|.++|++||+||||+|.... ..++..+++++|+++..
T Consensus 137 ~~~~~~~~~~~~~~~a~~~a~~~Gi~vv~AaGN~G~~~~~~~~~~~~~~~~~~~pa~~~~v~~vg~t~~ 205 (369)
T d1ga6a_ 137 EADANADGTLQAEDRIFATAAAQGQTFSVSSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTL 205 (369)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHTTCEEEEECCSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEEE
T ss_pred ccCCCcchHHHHHHHHHHHHHHCCCEEEEeCCCCcccCcCCCCCCccccccccccccCCceeeeeeecc
Confidence 322111234567788899999999999999999986431 23456789999998653
|
| >d1scjb_ d.58.3.2 (B:) Subtilisin prosegment {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Subtilisin prosegment species: Bacillus subtilis [TaxId: 1423]
Probab=98.44 E-value=4.6e-07 Score=71.59 Aligned_cols=43 Identities=12% Similarity=0.163 Sum_probs=38.6
Q ss_pred ceeeEEEeccceeEEEEEeCHHHHHHHHhcCcCeeEEEeCcccee
Q 044171 74 SYTKLYSYTHLLSGFAIHIESEEAVSTLQNAKGVRIIHEDIKMEK 118 (813)
Q Consensus 74 ~~~~~~~~~~~~~g~~~~~~~~~~~~~L~~~p~V~~v~~~~~~~~ 118 (813)
+.++.++|+ .+|||+++++++++ +.|+++|+|.+||+|..++.
T Consensus 28 gg~v~~~~~-~i~gfs~~l~~~~~-~~L~~~p~V~yVE~D~v~~a 70 (71)
T d1scjb_ 28 GGKVEKQFK-YVNAAAATLDEKAV-KELKKDPSVAYVEEDHIAHE 70 (71)
T ss_dssp TCEEEEECS-SSSEEEEEECHHHH-HHHHTSTTEEEEEECCEEEE
T ss_pred CCeEEEEEe-ecceEEEEeCHHHH-HHHHcCCCceEEeCCcEEEc
Confidence 467888887 79999999999998 99999999999999988764
|
| >d1v5ib1 d.58.3.2 (B:1-72) Proteinase A inhibitor 1, POIA1 {Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Proteinase A inhibitor 1, POIA1 species: Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]
Probab=98.22 E-value=1.9e-06 Score=68.19 Aligned_cols=38 Identities=26% Similarity=0.391 Sum_probs=31.7
Q ss_pred eeEEEec-cceeEEEEEeCHHHHHHHHhcCcC--eeEEEeCc
Q 044171 76 TKLYSYT-HLLSGFAIHIESEEAVSTLQNAKG--VRIIHEDI 114 (813)
Q Consensus 76 ~~~~~~~-~~~~g~~~~~~~~~~~~~L~~~p~--V~~v~~~~ 114 (813)
.+.+.|. ..|+||+++++++.+ ++|+++|+ |.+||+|.
T Consensus 31 ~~~~~~~~~~~~GFaa~l~e~~l-~~lr~~p~~~V~yVE~D~ 71 (72)
T d1v5ib1 31 TITNEYNMPGMKGFAGELTPQSL-TKFQGLQGDLIDSIEEDH 71 (72)
T ss_dssp CCCEEEEETTEEEEEEEECHHHH-HHHHHTBTTTEEEEEECC
T ss_pred ceEEEEeeeeeeEEEEecCHHHH-HHHHhCCCCCCceECCCC
Confidence 3445565 589999999999988 99999765 99999985
|
| >d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: E-set domains of sugar-utilizing enzymes domain: Sialidase, "linker" domain species: Micromonospora viridifaciens [TaxId: 1881]
Probab=96.71 E-value=0.0083 Score=50.09 Aligned_cols=91 Identities=12% Similarity=0.044 Sum_probs=62.3
Q ss_pred CCCcEEEeccCccEEEEEEEEecCCCCee-EEEEEeCCCCcEEEEecCeEEEecCcEEEEEEEEEEecCCC-CeEEEEEE
Q 044171 715 NTPSITISNLVGSRKVIRRVRNVSSANET-YTVTVKEPSGVKVSVSPQVFKIRGLASRELKIVLKATNSTR-AYSFGAMV 792 (813)
Q Consensus 715 n~~s~~~~~~~~~~~~~~tv~N~~~~~~t-y~~~~~~~~g~~v~~~~~~~~v~~g~~~~~~vt~~~~~~~~-~~~~G~i~ 792 (813)
..|++.+.- +.+.+++++|+|.|+...+ -++....|+|=+++ +..+.|+||+++++++++++|.... +.|.=.++
T Consensus 7 t~p~~~v~p-G~~~~~~vtVtN~g~~~~~~~~~~~~~P~GW~v~--~~~~~L~pG~s~~~~~~Vt~p~~a~~G~Y~i~~~ 83 (103)
T d1w8oa1 7 TIPDVALEP-GQQVTVPVAVTNQSGIAVPKPSLQLDASPDWQVQ--GSVEPLMPGRQAKGQVTITVPAGTTPGRYRVGAT 83 (103)
T ss_dssp ECCCEEECT-TCEEEEEEEEECCSSSCBSSCEEEEECCTTSEEE--EEECCBCTTCEEEEEEEEECCTTCCCEEEEEEEE
T ss_pred cCcceeeCC-CCeEEEEEEEEeCCCCceeeeeEEEcCCCCcccc--CcceeeCCCCcEEEEEEEECCCCCCCceEEEEEE
Confidence 346666643 5678899999999987654 46777889987665 4566799999999999999998653 34433444
Q ss_pred EEeCCcceEEEeEEEEE
Q 044171 793 LQGNNNHIIRIPIAVYV 809 (813)
Q Consensus 793 ~~~~~~~~l~~P~~~~~ 809 (813)
.+.+ +...+..|.+.+
T Consensus 84 a~~~-~~~~s~t~tvtV 99 (103)
T d1w8oa1 84 LRTS-AGNASTTFTVTV 99 (103)
T ss_dssp EEET-TEEEEEEEEEEE
T ss_pred EEeC-CcceEEEEEEEE
Confidence 4443 333444444433
|
| >d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: PA domain family: PA domain domain: Transferrin receptor ectodomain, apical domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.20 E-value=0.029 Score=51.87 Aligned_cols=39 Identities=26% Similarity=0.418 Sum_probs=35.2
Q ss_pred ccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEEEEeCCC
Q 044171 419 ALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDPD 463 (813)
Q Consensus 419 ~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 463 (813)
.+++|||+|+.+ |.+.+.+|+.+|+..||.|+|+|.++.
T Consensus 59 ~~v~GkI~l~r~------G~~~~~~Kv~~A~~~GA~gviiysDp~ 97 (193)
T d1de4c2 59 TPVNGSIVIVRA------GKITFAEKVANAESLNAIGVLIYMDQT 97 (193)
T ss_dssp SCCTTSEEEEES------CSSCHHHHHHHHHHTTCCCEEEECCTT
T ss_pred cccCceEEEEeC------CCCCHHHHHHHHHHcCceEEEEecCcc
Confidence 578999999998 677889999999999999999998765
|
| >d3bi1a2 c.8.4.1 (A:118-350) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: PA domain family: PA domain domain: Glutamate carboxypeptidase II species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.96 E-value=0.058 Score=51.36 Aligned_cols=39 Identities=28% Similarity=0.393 Sum_probs=34.9
Q ss_pred cccccceEEEEeeccCCCCCchhHHHHHHHHHhcCceEEEEEeCC
Q 044171 418 PALVRGKLIICTYSFDFENDDATIATVADNIKKIEAAGFILRMDP 462 (813)
Q Consensus 418 ~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~ 462 (813)
..+++|||+|+.+ |.+.+.+|+.+|+..||+|+|+|+++
T Consensus 76 gi~~~gkIvl~ry------G~~~~~~Kv~~A~~~GA~GviiysDP 114 (233)
T d3bi1a2 76 KINCSGKIVIARY------GKVFRGNKVKNAQLAGAKGVILYSDP 114 (233)
T ss_dssp CCCCTTCEEEEEC------CSSCHHHHHHHHHHTTCSEEEEECCH
T ss_pred CCcccceEEEEeC------CCCchhHHHHHHHHcCceEEEEecCh
Confidence 4578999999987 56778999999999999999999975
|
| >d1rowa_ b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: PapD-like family: MSP-like domain: SSP-19 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=85.42 E-value=1.7 Score=35.54 Aligned_cols=57 Identities=12% Similarity=0.138 Sum_probs=44.5
Q ss_pred EEEeccCccEEEEEEEEecCCCCeeEEEEEeCCCCcEEEEecCeEEEecCcEEEEEEEEEE
Q 044171 719 ITISNLVGSRKVIRRVRNVSSANETYTVTVKEPSGVKVSVSPQVFKIRGLASRELKIVLKA 779 (813)
Q Consensus 719 ~~~~~~~~~~~~~~tv~N~~~~~~ty~~~~~~~~g~~v~~~~~~~~v~~g~~~~~~vt~~~ 779 (813)
+.+..-++.+ +++|+|.+.....|++....|. ...+.|..=.|.||++.+|.|+...
T Consensus 8 ~~f~~~~g~~--~~~l~N~s~~~vafKvKtt~~~--~y~V~P~~G~i~P~~~~~I~I~~~~ 64 (107)
T d1rowa_ 8 CTVPAAGVSS--THKLVNGGAEKIVFKIKSSNNN--EYRIAPVFGFVDPSGSKDVVITRTA 64 (107)
T ss_dssp EEEETTCEEE--EEEEEECSSSCEEEEEEESCSS--SEEEECSEEEECTTEEEEEEEEECS
T ss_pred ceeeCCCCeE--EEEEEcCCCCeEEEEEEcCCCC--eEEEECCEEEECCCCEEEEEEEeCC
Confidence 3343334444 4599999999999999988775 5677789889999999999998754
|
| >d1ex0a2 b.1.5.1 (A:516-627) Transglutaminase, two C-terminal domains {Human (Homo sapiens), blood isozyme [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Transglutaminase, two C-terminal domains family: Transglutaminase, two C-terminal domains domain: Transglutaminase, two C-terminal domains species: Human (Homo sapiens), blood isozyme [TaxId: 9606]
Probab=85.31 E-value=1.2 Score=36.98 Aligned_cols=57 Identities=14% Similarity=0.077 Sum_probs=42.9
Q ss_pred CccEEEEEEEEecCCCCeeEEEEEeCC-------CCcEEEEecCeEEEecCcEEEEEEEEEEec
Q 044171 725 VGSRKVIRRVRNVSSANETYTVTVKEP-------SGVKVSVSPQVFKIRGLASRELKIVLKATN 781 (813)
Q Consensus 725 ~~~~~~~~tv~N~~~~~~ty~~~~~~~-------~g~~v~~~~~~~~v~~g~~~~~~vt~~~~~ 781 (813)
+....++++++|.+++..+-++..... .+..+.-...+++|+||+++++.+++....
T Consensus 15 G~df~v~i~~~N~s~~~~~v~l~l~a~~v~YtG~~~~~~~~~~~~v~L~p~~~~~v~~~v~~~~ 78 (112)
T d1ex0a2 15 GKDFKLSITFRNNSHNRYTITAYLSANITFYTGVPKAEFKKETFDVTLEPLSFKKEAVLIQAGE 78 (112)
T ss_dssp TCCEEEEEEEEECSSSCEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECTTEEEEEEEEECHHH
T ss_pred CCCEEEEEEEEECCCCCEEEEEEEEEEEEEeCCcCchheEEeeEEEEECCCCEEEEEEEEcHHH
Confidence 456778889999999887777665431 233455555689999999999999998854
|
| >d2vzsa2 b.1.4.1 (A:778-899) Exochitosanase CsxA, domains 2, 4 and 5 {Amycolatopsis orientalis [TaxId: 31958]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: beta-Galactosidase/glucuronidase domain family: beta-Galactosidase/glucuronidase domain domain: Exochitosanase CsxA, domains 2, 4 and 5 species: Amycolatopsis orientalis [TaxId: 31958]
Probab=82.69 E-value=5.2 Score=33.28 Aligned_cols=78 Identities=13% Similarity=0.145 Sum_probs=50.1
Q ss_pred CccEEEEEEEEecCCCC---eeEEEEEeCCCCcE---EEEecCeEEEecCcEEEEEEEEEEecCCCCeEEEEEEEEeCCc
Q 044171 725 VGSRKVIRRVRNVSSAN---ETYTVTVKEPSGVK---VSVSPQVFKIRGLASRELKIVLKATNSTRAYSFGAMVLQGNNN 798 (813)
Q Consensus 725 ~~~~~~~~tv~N~~~~~---~ty~~~~~~~~g~~---v~~~~~~~~v~~g~~~~~~vt~~~~~~~~~~~~G~i~~~~~~~ 798 (813)
.+...++++|+|.++.. .--.+.+....|-. +-.|..-|+|=|||+++|+|++........ ...|.+.+-|-
T Consensus 37 dg~~~v~vtl~N~s~~~~pAff~rL~l~d~~g~~IlPv~~sDNY~sL~PGE~~~v~i~~~~~~~~~~--~~~l~v~G~Nv 114 (122)
T d2vzsa2 37 DGTTTTTVTLKNTSGGRLPAFYVDSKVVDSAGKPVLPVEWNDNAVSLWPGETTTLTAKYRTADLKGS--KPSVRISGWNT 114 (122)
T ss_dssp TSEEEEEEEEEECCSSSCCEEEEEEEEECTTSCBCSSCEESSCSEEECTTCEEEEEEEEEGGGGTTC--CCEEEEEETTT
T ss_pred CCcEEEEEEEEcCCCCccEEEEEEEEeEcCCCCEecceEeeCCeEEEcCCCeEEEEEEecccccCCC--ceEEEEeeeec
Confidence 35667889999998742 22334444444422 445677899999999999999986543221 12566766555
Q ss_pred ceEEEe
Q 044171 799 HIIRIP 804 (813)
Q Consensus 799 ~~l~~P 804 (813)
..-.||
T Consensus 115 ~~~~v~ 120 (122)
T d2vzsa2 115 GTQTVP 120 (122)
T ss_dssp EEEEEE
T ss_pred CcEEec
Confidence 566665
|
| >d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: PapD-like family: MSP-like domain: WR4 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=81.91 E-value=2.4 Score=34.78 Aligned_cols=49 Identities=12% Similarity=0.099 Sum_probs=41.5
Q ss_pred EEEEEecCCCCeeEEEEEeCCCCcEEEEecCeEEEecCcEEEEEEEEEEec
Q 044171 731 IRRVRNVSSANETYTVTVKEPSGVKVSVSPQVFKIRGLASRELKIVLKATN 781 (813)
Q Consensus 731 ~~tv~N~~~~~~ty~~~~~~~~g~~v~~~~~~~~v~~g~~~~~~vt~~~~~ 781 (813)
+.+|+|.+.....|++....|. ...+.|..=.|.||++.++.|+..+..
T Consensus 21 ~~~l~N~s~~~vafKiktt~~~--~y~V~P~~G~I~P~~~~~i~I~~~~~~ 69 (109)
T d1m1sa_ 21 THNITSESDSRLAFKVKSSNNE--HYRVRPVYGFVDAKGKSKLDINRLPGP 69 (109)
T ss_dssp EEEEEECSSSEEEEEEEESCTT--TEEEECSEEEECTTCEEEEEEEECSCC
T ss_pred EEEEECCCCCcEEEEEEcCCCC--eEEEeCCeeEECCCCeEEEEEEeCCCC
Confidence 4599999999999999988776 566778888899999999999986543
|
| >d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: PapD-like family: MSP-like domain: Major sperm protein, MSP species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=81.76 E-value=2.4 Score=35.63 Aligned_cols=53 Identities=15% Similarity=0.116 Sum_probs=44.5
Q ss_pred CccEEEEEEEEecCCCCeeEEEEEeCCCCcEEEEecCeEEEecCcEEEEEEEEEE
Q 044171 725 VGSRKVIRRVRNVSSANETYTVTVKEPSGVKVSVSPQVFKIRGLASRELKIVLKA 779 (813)
Q Consensus 725 ~~~~~~~~tv~N~~~~~~ty~~~~~~~~g~~v~~~~~~~~v~~g~~~~~~vt~~~ 779 (813)
....+..++|+|.++....|++....|. ...+.|..=.|.||++.+|+|++..
T Consensus 22 ~~~~~~~l~l~N~s~~~vafKvktt~p~--~y~v~P~~G~i~p~~~~~i~V~~~~ 74 (124)
T d1grwa_ 22 DDKHTYHIKVINSSARRIGYGIKTTNMK--RLGVDPPCGVLDPKEAVLLAVSCDA 74 (124)
T ss_dssp SSCEEEEEEEEECSSSCEEEEEEESCTT--TEEEESSEEEECTTCEEEEEEEECC
T ss_pred CcEEEEEEEEECCCCCeEEEEEEeCCCc--eEEEECCCCEECCCCEEEEEEEEec
Confidence 3455566799999999999999988876 5666788888999999999999975
|