Citrus Sinensis ID: 044174

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330--
Protein Sequence
RLAADAVKEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELTNPTSWLEGPIDIKAWTMHVRAAMEAMFSKHFRIEIIDEMFNRLIRRLFEFSDKVESGYKEKTQLFVILMRK
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEcccccccHHHHHHHHHHHHHHHHHHcccccccccEEEEEcccccccHHHHHHccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEccccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHcccccccccHHHHHHHHHHcccEEEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
cHHHHHHcHHHHHHHHHHHHHHccccccccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEcccccccHHHHHHHccccccEEEEEccccccccccccccEEEEEcHHHHHHHHccccccccccccccccccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEccccccccccccccHHHHHHHHHHHHHHHcccccHHHHcccccccccccHHHHHHHHHHcccEEEEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEcc
Coil and Loop (DISEMBL)
RLAADAVKEKIVDAITRNLNVCELSSASNIIRLADlgcavgsnTINAMQDVLEVIKNkchsqcpssklpefqvffndktsndfntlftslpqqreyysagvpgsfhhrlfpqssihfahCSYALHWLSkvpeelldenspawnkgrihyTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMViimpgipygmpyshltnGVMYDLMATIFMELANEQLITeaeldsfnlpiysasSEEMVKLVDKNghfsiktveltnptswlegpidikAWTMHVRAAMEAMFSKHFRIEIIDEMFNRLIRRLFEFSDkvesgykeKTQLFVILMRK
Flexible Loop (DISEMBL)
rlaadavkEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIktveltnptswlegPIDIKAWTMHVRAAMEAMFSKHFRIEIIDEMFNRLIRRLFEfsdkvesgykektqlFVILMRK
Low Complexity Region (SEG)
RLAADAVKEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELTNPTSWLEGPIDIKAWTMHVRAAMEAMFSKHFRIEIIDEMFNRLIRRLFEFSDKVESGYKEKTQLFVILMRK
Disordered region (IsUnstruct)
********EKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELTNPTSWLEGPIDIKAWTMHVRAAMEAMFSKHFRIEIIDEMFNRLIRRLFEFSDKVESGYKEKTQLFVIL***
Disordered Region (DISOPRED)
*****AVKEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQDVLEVIKN*C***********FQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELTNPTSWLEGPIDIKAWTMHVRAAMEAMFSKHFRIEIIDEMFNRLIRRLFEFSDKVESGYKEKTQLFVILMRK
Disordered Region (DISEMBL)
RLAADAVKEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELTNPTSWLEGPIDIKAWTMHVRAAMEAMFSKHFRIEIIDEMFNRLIRRLFEFSDKVESGYKEKTQLFVILMRK
Disordered Region (DISPRO)
RLAADAVKEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELTNPTSWLEGPIDIKAWTMHVRAAMEAMFSKHFRIEIIDEMFNRLIRRLFEFSDKVESGYKEKTQLFVILMRK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
RLAADAVKEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELTNPTSWLEGPIDIKAWTMHVRAAMEAMFSKHFRIEIIDEMFNRLIRRLFEFSDKVESGYKEKTQLFVILMRK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	332	2.2.26 [Sep-21-2011]
Q9FKC8	362	Probable S-adenosylmethio	no	no	0.990	0.908	0.380	5e-64
Q9LS10	359	Probable S-adenosylmethio	no	no	0.918	0.849	0.412	2e-63
Q9FKD0	362	Probable S-adenosylmethio	no	no	0.978	0.897	0.370	3e-62
Q9FKR0	361	Probable S-adenosylmethio	no	no	0.990	0.911	0.369	5e-60
Q9FZN8	369	Caffeine synthase 1 OS=Ca	N/A	no	0.795	0.715	0.375	2e-48
Q68CM3	365	Probable caffeine synthas	N/A	no	0.795	0.723	0.361	7e-46
Q0J998	404	Indole-3-acetate O-methyl	no	no	0.876	0.720	0.338	3e-44
Q9FLN8	386	Indole-3-acetate O-methyl	no	no	0.816	0.702	0.335	4e-43
Q9FYZ9	364	Benzoate carboxyl methylt	N/A	no	0.819	0.747	0.324	1e-38
A4GE69	372	7-methylxanthosine syntha	N/A	no	0.870	0.776	0.341	2e-38

>sp|Q9FKC8|MT799_ARATH Probable S-adenosylmethionine-dependent methyltransferase At5g37990 OS=Arabidopsis thaliana GN=At5g37990 PE=2 SV=2

 Score =  244 bits (624), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 129/339 (38%), Positives = 208/339 (61%), Gaps = 10/339 (2%)

Query: 1   RLAADAVKEKIVDAITRNLNVCELS--SASNIIRLADLGCAVGSNTINAMQDVLEVIKNK 58
           ++A D  KEK  +AI +NL++  L+  S  NI+R+AD GC++G NT   +Q++++ +K K
Sbjct: 27  KVAIDGAKEKTSEAILKNLDLELLNRNSDENILRIADFGCSIGPNTFEVVQNIIDTVKQK 86

Query: 59  CHSQCPS--SKLPEFQVFFNDKTSNDFNTLFTSLP--QQREYYSAGVPGSFHHRLFPQSS 114
              +  +      EFQV FND+ +NDFNTLF + P   ++ Y S GVPGSFH R+ P++S
Sbjct: 87  NLKENNAYIGAPLEFQVCFNDQPNNDFNTLFRTQPISSKQAYLSVGVPGSFHGRVLPKNS 146

Query: 115 IHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNA 174
           +H  H +YALHWLS VP+ + D+ SPA NK  I   N  EEV  AY  QF KDM +FL A
Sbjct: 147 LHIGHITYALHWLSTVPQHVCDKKSPALNKSYIQCNNLVEEVTEAYRVQFKKDMGDFLGA 206

Query: 175 RAEEIVSGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLP 234
           RAEE+VSGG+M++    +P G+P +    GV+ D++    M++A + + T+ +++ F+LP
Sbjct: 207 RAEELVSGGLMILSGQCLPDGVPKALTWQGVVIDMIGDCLMDMAKQGITTKEKIELFSLP 266

Query: 235 IYSASSEEMVKLVDKNGHFSIKTVE-LTNPTSWLEGPIDIKAWTMHVRAAMEAMFSKHFR 293
           IY     E    +++N +FSI+T+E +++P  +   P+     T   RA +  +  +HF 
Sbjct: 267 IYIPHISEFKAEIERNENFSIETMEKISHPMDY--KPLTNDFITSMFRAILNTIIEEHFG 324

Query: 294 IEIIDEMFNRLIRRLFEFSDKVESGYKEKTQLFVILMRK 332
             +++E+F+R  ++L ++    +   K+    F++L RK
Sbjct: 325 DGVVNELFDRFAKKLNKYPIDFKR-CKKYVNYFIVLKRK 362

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q9LS10|MT810_ARATH Probable S-adenosylmethionine-dependent methyltransferase At5g38100 OS=Arabidopsis thaliana GN=At5g38100 PE=2 SV=1

 Score =  242 bits (618), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 129/313 (41%), Positives = 189/313 (60%), Gaps = 8/313 (2%)

Query: 1   RLAADAVKEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQDVLEVIKNK-C 59
           + A  +  EK    I   L++ +LSS     R+AD GC++G NT +  Q +++ +K+K  
Sbjct: 27  KAAISSAVEKTRRCIFEKLDL-QLSSDFGTFRIADFGCSIGPNTFHVAQSIIDTVKSKRL 85

Query: 60  HSQCPSSKLP-EFQVFFNDKTSNDFNTLFTSLP--QQREYYSAGVPGSFHHRLFPQSSIH 116
                +S +P EFQVFFND+ +NDFNTLF + P   +REY+S GVPGSF+ R+ P++SIH
Sbjct: 86  EESTENSLVPLEFQVFFNDQPTNDFNTLFRTQPLSPEREYFSVGVPGSFYGRVLPRNSIH 145

Query: 117 FAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARA 176
             H SY  HWLSKVP+ + D+ S AWNK  I   N  EEV  AY  QF KDME FL+ARA
Sbjct: 146 IGHTSYTTHWLSKVPDNVCDKKSMAWNKNYIQCNNLLEEVTKAYKVQFIKDMEIFLDARA 205

Query: 177 EEIVSGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIY 236
           EE+V GG+M++I   +P G+       G + D +    M++A   + +E ++D F+LP+Y
Sbjct: 206 EELVPGGLMIVIGECLPDGVSLYETWQGYVMDTIGDCLMDMAKSGITSEEKIDLFSLPVY 265

Query: 237 SASSEEMVKLVDKNGHFSIKTVELTNPTSWLEG-PIDIKAWTMHVRAAMEAMFSKHFRIE 295
                E+   ++KNG F+I+ +E T  +  LEG P+     T   RA +  +  KHF   
Sbjct: 266 FPQFSELKGEIEKNGSFTIELMETT--SHPLEGKPLTNDFITSTFRAFLTTIIEKHFGDG 323

Query: 296 IIDEMFNRLIRRL 308
           ++DE+F RL ++L
Sbjct: 324 VVDELFYRLAKKL 336

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9FKD0|MT797_ARATH Probable S-adenosylmethionine-dependent methyltransferase At5g37970 OS=Arabidopsis thaliana GN=At5g37970 PE=1 SV=1

 Score =  239 bits (609), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 127/343 (37%), Positives = 207/343 (60%), Gaps = 18/343 (5%)

Query: 1   RLAADAVKEKIVDAITRNLNVCELS--SASNIIRLADLGCAVGSNTINAMQDVLEVIK-- 56
           ++A D VKE+  +AI   L++  L+  S  NI+R+ D GC++G NT + +Q++++ +K  
Sbjct: 27  KVAIDGVKERTSEAILEKLDLEFLNRNSEENILRIVDFGCSIGPNTFDVVQNIIDTVKQK 86

Query: 57  ----NKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLP--QQREYYSAGVPGSFHHRLF 110
               NK +   P     EFQV FND+ +NDFNTLF + P   ++EY+S GVPGSFH R+ 
Sbjct: 87  RLKENKTYIGAPL----EFQVCFNDQPNNDFNTLFRTQPFFSRKEYFSVGVPGSFHGRVL 142

Query: 111 PQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMEN 170
           P++S+H  H SY LHWLS VP+ + D+ SPA NK  I   N  +EV  AY  QF KD   
Sbjct: 143 PKNSLHIGHTSYTLHWLSNVPQHVCDKKSPALNKSYIQCNNLVDEVTKAYKIQFRKDFGG 202

Query: 171 FLNARAEEIVSGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDS 230
           FL ARAEE+VSGG+M++    +P G+P +    GV+ D++    M+LA   + ++ +++ 
Sbjct: 203 FLEARAEELVSGGLMILSGQCLPDGIPKALTWQGVVIDMIGDCLMDLAKLGITSKEKIEL 262

Query: 231 FNLPIYSASSEEMVKLVDKNGHFSIKTV-ELTNPTSWLEGPIDIKAWTMHVRAAMEAMFS 289
           F+LP Y     E    +++N +F+++T+ E+++P  ++  P+     T   RA +  +  
Sbjct: 263 FSLPTYIPHISEFKANIEQNENFNVETMEEISHPMDYM--PLTNDFITSMFRAILNTIIE 320

Query: 290 KHFRIEIIDEMFNRLIRRLFEFSDKVESGYKEKTQLFVILMRK 332
           +HF   +++E+F+RL +RL ++    +   K+    F++L RK
Sbjct: 321 EHFGEGVVNELFSRLAKRLDKYPIDFKR-CKKYVNYFIVLKRK 362

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9FKR0|MT878_ARATH Probable S-adenosylmethionine-dependent methyltransferase At5g38780 OS=Arabidopsis thaliana GN=At5g38780 PE=2 SV=1

 Score =  231 bits (589), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 125/338 (36%), Positives = 200/338 (59%), Gaps = 9/338 (2%)

Query: 1   RLAADAVKEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQDVLEVIKNK-- 58
           +   D V+EK    I  NL++  ++   +   +AD GC++G NT +A+Q++++++K K  
Sbjct: 27  KAGIDGVQEKARQYILENLDLLNMNPNLSTFTIADFGCSIGPNTFHAVQNIIDIVKLKHL 86

Query: 59  CHSQCPSSKLP-EFQVFFNDKTSNDFNTLFTSLP--QQREYYSAGVPGSFHHRLFPQSSI 115
             SQ  S   P EFQV+FND  +NDFNTLF + P   ++EY+S GVPGSF+ R+ P++SI
Sbjct: 87  KESQEDSRVAPLEFQVYFNDLPNNDFNTLFRTQPPSSKQEYFSVGVPGSFYGRVLPRNSI 146

Query: 116 HFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNAR 175
           H  + S+  HWLSKVPEE+ D+NS AWNK  IH  N  EEV  AY  QF KDM  FL AR
Sbjct: 147 HIGNTSFTTHWLSKVPEEVCDKNSLAWNKNYIHCNNLIEEVTEAYKVQFEKDMGVFLKAR 206

Query: 176 AEEIVSGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPI 235
           AEE+V GG+M+ +   +P G+      +G++ D +     ++A   + TE +++ FNLP+
Sbjct: 207 AEELVPGGLMITLGQCLPDGVAMYETWSGIVKDTIGDCLQDMATLGVTTEEKIEMFNLPV 266

Query: 236 YSASSEEMVKLVDKNGHFSIKTVEL-TNPTSWLEGPIDIKAWTMHVRAAMEAMFSKHFRI 294
           Y     E+   +++N  F+I+ +E+ ++P   ++  +     T   RA +  +  +HF  
Sbjct: 267 YFPQVSELKGAIEQNIRFTIEMMEIVSHPLEAVQ--LSNNFITSMYRAILSTVIERHFGG 324

Query: 295 EIIDEMFNRLIRRLFEFSDKVESGYKEKTQLFVILMRK 332
            ++DE+F +  ++L E     E   K++    ++L RK
Sbjct: 325 SVVDELFRQFAKKLSEHPIDFEKC-KKQMVYHIVLKRK 361

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9FZN8|TCS1_CAMSI Caffeine synthase 1 OS=Camellia sinensis GN=TCS1 PE=1 SV=1

 Score =  192 bits (489), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 108/288 (37%), Positives = 164/288 (56%), Gaps = 24/288 (8%)

Query: 34  ADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLP-- 91
           ADLGCA G NT   +  +  +++ KC     + +  E QV+ ND   NDFNTLF  L   
Sbjct: 62  ADLGCAAGPNTFAVISTIKRMMEKKCREL--NCQTLELQVYLNDLFGNDFNTLFKGLSSE 119

Query: 92  ------QQREYYSAGVPGSFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKG 145
                 ++   Y  GVPGSFH RLFP++S+H  H SY++HWL++ P+ L      A NKG
Sbjct: 120 VIGNKCEEVPCYVMGVPGSFHGRLFPRNSLHLVHSSYSVHWLTQAPKGLTSREGLALNKG 179

Query: 146 RIHYTNAAEEVVN-AYASQFAKDMENFLNARAEEIVSGGMMVIIMPGIPYGMPYSHLTNG 204
           +I+ +  +  VV  AY SQF +D   FLNAR++E+V  G MV+I+ G     P S + + 
Sbjct: 180 KIYISKTSPPVVREAYLSQFHEDFTMFLNARSQEVVPNGCMVLILRGRQCSDP-SDMQSC 238

Query: 205 VMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSI--------K 256
             ++L+A    EL ++ LI E +LD+FN+P Y AS EE+  +V+++G F+I         
Sbjct: 239 FTWELLAMAIAELVSQGLIDEDKLDTFNIPSYFASLEEVKDIVERDGSFTIDHIEGFDLD 298

Query: 257 TVELTNPTSWLEGPIDIKAWTMHVRAAMEAMFSKHFRIEIIDEMFNRL 304
           +VE+     W+ G    + +T  VRA  E + S  F  EI+D+++++ 
Sbjct: 299 SVEMQENDKWVRG----EKFTKVVRAFTEPIISNQFGPEIMDKLYDKF 342

Involved in the biosynthesis of caffeine. Catalyzes the conversion of 7-methylxanthine (7mX) to theobromine and of theobromine to caffeine. Has 3-N- and 1-N-methylation activity.

Camellia sinensis (taxid: 4442)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 0

>sp|Q68CM3|TCS2_CAMSI Probable caffeine synthase 2 OS=Camellia sinensis GN=TCS2 PE=2 SV=1

 Score =  184 bits (467), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 104/288 (36%), Positives = 160/288 (55%), Gaps = 24/288 (8%)

Query: 34  ADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLP-- 91
            DLGCA G  T   +  +  +++ KC     + +  E QV+ ND   NDFNTLF  LP  
Sbjct: 58  VDLGCAAGPTTFTVISTIKRMMEKKCREL--NCQTLELQVYLNDLPGNDFNTLFKGLPSK 115

Query: 92  ------QQREYYSAGVPGSFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKG 145
                 ++   Y  GVPGSFH RLFP++S+H  H  Y++HWL++ P+ L  +   A NKG
Sbjct: 116 VVGNKCEEVSCYVVGVPGSFHGRLFPRNSLHLVHSCYSVHWLTQAPKGLTSKEGLALNKG 175

Query: 146 RIHYTNAAEEVVN-AYASQFAKDMENFLNARAEEIVSGGMMVIIMPGIPYGMPYSHLTNG 204
           +I+ +  +  VV  AY SQF +D   FLN+R++E+V  G MV+I+ G     P S + + 
Sbjct: 176 KIYISKTSPPVVREAYLSQFHEDFTMFLNSRSQEVVPNGCMVLILRGRLSSDP-SDMGSC 234

Query: 205 VMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSI---KTVELT 261
             ++L+A    EL ++ LI E +LD+FN+P Y  S EE+  +V++NG F+I   +  EL 
Sbjct: 235 FTWELLAVAIAELVSQGLIDEDKLDTFNVPSYFPSLEEVKDIVERNGSFTIDHMEGFELD 294

Query: 262 NP-----TSWLEGPIDIKAWTMHVRAAMEAMFSKHFRIEIIDEMFNRL 304
           +P       W+ G    + +    RA  E + S  F  EI+D+++ + 
Sbjct: 295 SPEMQENDKWVRG----EKFATVARAFTEPIISNQFGHEIMDKLYEKF 338

May be involved in the biosynthesis of caffeine. Catalyzes the conversion of 7-methylxanthine (7mX) to theobromine and of theobromine to caffeine. Has 1-N-methylation activity.

Camellia sinensis (taxid: 4442)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 0

>sp|Q0J998|IAMT1_ORYSJ Indole-3-acetate O-methyltransferase 1 OS=Oryza sativa subsp. japonica GN=IAMT1 PE=1 SV=1

 Score =  179 bits (453), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 111/328 (33%), Positives = 162/328 (49%), Gaps = 37/328 (11%)

Query: 9   EKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKL 68
           E+ +DA+       E SS+  +   ADLGC+ GSN++  +  ++  +     S+      
Sbjct: 60  EETLDAMM------ERSSSDKLFTAADLGCSCGSNSLFIVDVIVRRVSEAYESR--GRDA 111

Query: 69  PEFQVFFNDKTSNDFNTLFTSLP----------------------QQREYYSAGVPGSFH 106
           PEFQVFF+D  SNDFNTLF  LP                        R Y++AGVPG+F+
Sbjct: 112 PEFQVFFSDLPSNDFNTLFQLLPPLLAPVAGSLEECLAAGEGAATATRPYHAAGVPGTFY 171

Query: 107 HRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAK 166
            RLFP  SI     +++LHWLS+VPEE+ D  SPA+N GR+    A E V  AY  QF  
Sbjct: 172 GRLFPGESIDVFTSTFSLHWLSQVPEEVGDSASPAYNGGRVFVHRATEAVAAAYKRQFQA 231

Query: 167 DMENFLNARAEEIVSGGMMVIIMPGIPYGMPYSHLTNGVMYDL-MATIFMELANEQLITE 225
           D+  FL +RA E+  GG M +   G   G P      G+++       + +L  E ++  
Sbjct: 232 DLARFLRSRAREMKRGGAMFLACLGRSSGDPADQGGAGLLFGTHFQDAWDDLVQEGVVEG 291

Query: 226 AELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELTNPTSWL--EGPIDI----KAWTMH 279
            + DSFN+P+Y+ S +E   +V  +G F+I  +EL    S L  + P D     +A    
Sbjct: 292 EKRDSFNIPVYAPSLQEFRDVVRADGAFAIDRLELVRGGSPLVVDRPDDAAEVGRAMANS 351

Query: 280 VRAAMEAMFSKHFRIEIIDEMFNRLIRR 307
            +A    +   H       ++F RL RR
Sbjct: 352 CKAVAGVLVDAHIGERRGAQLFERLERR 379

Catalyzes the methylation of the free carboxyl end of the plant hormone indole-3-acetic acid (IAA). Converts IAA to IAA methyl ester (MeIAA). Regulates IAA activities by IAA methylation. Methylation of IAA plays an important role in regulating plant development and auxin homeostasis. MeIAA seems to be an inactive form of IAA.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: n

EC: 1

EC: 0

>sp|Q9FLN8|IAMT1_ARATH Indole-3-acetate O-methyltransferase 1 OS=Arabidopsis thaliana GN=IAMT1 PE=1 SV=1

 Score =  175 bits (444), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 99/295 (33%), Positives = 153/295 (51%), Gaps = 24/295 (8%)

Query: 35  DLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLP--- 91
           DLGC+ G+NT++ +  +++ I  +  +       PEF  FF+D  SNDFNTLF  LP   
Sbjct: 70  DLGCSSGANTVHIIDFIVKHISKRFDAA--GIDPPEFTAFFSDLPSNDFNTLFQLLPPLV 127

Query: 92  ------------QQREYYSAGVPGSFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENS 139
                         R Y+ AGVPGSF+ RLFP  +I F H +++LHWLS+VPE + D  S
Sbjct: 128 SNTCMEECLAADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRS 187

Query: 140 PAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIMPGIPYGMPYS 199
            A+N+GR+    A E+   AY  QF  D+  FL ARA E+  GG M ++  G     P  
Sbjct: 188 AAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGRTSVDPTD 247

Query: 200 HLTNGVMYDL-MATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTV 258
               G+++       + +L  E L+   + D FN+P+Y+ S ++  ++VD NG F+I  +
Sbjct: 248 QGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFAIDKL 307

Query: 259 ELTNPTSWL--EGPIDI----KAWTMHVRAAMEAMFSKHFRIEIIDEMFNRLIRR 307
            +    S L    P D     +A+    R+    +   H   E+ +++F+R+  R
Sbjct: 308 VVYKGGSPLVVNEPDDASEVGRAFASSCRSVAGVLVEAHIGEELSNKLFSRVESR 362

Catalyzes the methylation of the free carboxyl end of the plant hormone indole-3-acetic acid (IAA). Converts IAA to IAA methyl ester (MeIAA). Regulates IAA activities by IAA methylation. Methylation of IAA plays an important role in regulating plant development and auxin homeostasis. Required for correct leaf pattern formation. MeIAA seems to be an inactive form of IAA.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: n

EC: 1

EC: 0

>sp|Q9FYZ9|BAMT_ANTMA Benzoate carboxyl methyltransferase OS=Antirrhinum majus GN=BAMT PE=1 SV=1

 Score =  160 bits (405), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 96/296 (32%), Positives = 150/296 (50%), Gaps = 24/296 (8%)

Query: 32  RLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLP 91
           ++ D+GC+ G N +  M  ++  I++  +++   ++LPEF+VF ND   NDFN LF  L 
Sbjct: 57  KMMDMGCSSGPNALLVMSGIINTIED-LYTEKNINELPEFEVFLNDLPDNDFNNLFKLLS 115

Query: 92  QQR-EYYSAGVPGSFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYT 150
            +    +  G+PGSF+ RL P+ S+HFA+ SY++HWLS+VPE L D N     +     T
Sbjct: 116 HENGNCFVYGLPGSFYGRLLPKKSLHFAYSSYSIHWLSQVPEGLEDNN----RQNIYMAT 171

Query: 151 NAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIMPGIPYGMPYSHLTNGVMYDLM 210
            +  EV  AYA Q+ +D   FL  R EEIV GG MV+   G     P S   +  ++ L+
Sbjct: 172 ESPPEVYKAYAKQYERDFSTFLKLRGEEIVPGGRMVLTFNGRSVEDPSSK-DDLAIFTLL 230

Query: 211 ATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELTNPTSWLEGP 270
           A   +++  E L+   +L SFN+PIYS  + E+   +   G F++  +E+     W    
Sbjct: 231 AKTLVDMVAEGLVKMDDLYSFNIPIYSPCTREVEAAILSEGSFTLDRLEVFR-VCWDASD 289

Query: 271 IDIKAWTMH----------------VRAAMEAMFSKHFRIEIIDEMFNRLIRRLFE 310
                                    VRA  E M + HF   I+D +F +  +++ E
Sbjct: 290 YTDDDDQQDPSIFGKQRSGKFVADCVRAITEPMLASHFGSTIMDLLFGKYAKKIVE 345

Converts benzoic acid into the volatile ester methyl benzoates. This scent, mostly produced in a rhythmical, diurnal manner, attracts the pollinators.

Antirrhinum majus (taxid: 4151)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A4GE69|XMT1_COFCA 7-methylxanthosine synthase 1 OS=Coffea canephora GN=XMT1 PE=1 SV=1

 Score =  159 bits (403), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 108/316 (34%), Positives = 159/316 (50%), Gaps = 27/316 (8%)

Query: 11  IVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPE 70
           +++   R L    L + +  I++ADLGCA G NT+  ++D+++ I      +    + P 
Sbjct: 35  VLEQCVRELLRANLPNINKCIKVADLGCASGPNTLLTVRDIVQSIDKVGQEKKNELERPT 94

Query: 71  FQVFFNDKTSNDFNTLFTSLPQ---------QREYYS---AGVPGSFHHRLFPQSSIHFA 118
            Q+F ND   NDFN++F  LP           R+  S     +PGSF+ RLFP+ S+HF 
Sbjct: 95  IQIFLNDLFPNDFNSVFKLLPSFYRKLEKENGRKIGSCLIGAMPGSFYSRLFPEESMHFL 154

Query: 119 HCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAE-EVVNAYASQFAKDMENFLNARAE 177
           H  Y L WLS+VP  L+ E     NKG I+ + A+   V  AY  QF KD   FL   +E
Sbjct: 155 HSCYCLQWLSQVPSGLVTELGIGTNKGSIYSSKASRLPVQKAYLDQFTKDFTTFLRIHSE 214

Query: 178 EIVSGGMMVI--IMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPI 235
           E+ S G M++  I  G+        L      DL+     +L  E  + E +LDSFNLP+
Sbjct: 215 ELFSHGRMLLTCICKGV-------ELDARNAIDLLEMAINDLVVEGHLEEEKLDSFNLPV 267

Query: 236 YSASSEEMVKLVDKNGHFSIKTVELTNPTSWLEGPID---IKAWTM--HVRAAMEAMFSK 290
           Y  S+EE+  +V++ G F I  +E           ID   IKA  +   VRA  E + + 
Sbjct: 268 YIPSAEEVKCIVEEEGSFEILYLETFKVLYDAGFSIDDEHIKAEYVASSVRAVYEPILAS 327

Query: 291 HFRIEIIDEMFNRLIR 306
           HF   II ++F+R  +
Sbjct: 328 HFGEAIIPDIFHRFAK 343

Involved in the biosynthesis of caffeine. Specific for xanthosine. Cannot use xanthosine 5'-monophosphate (XMP) as substrate. Directly produces 7-methylxanthine, and therefore the methyl transfer and nucleoside cleavage may be coupled. Catalyzes the 7-N-methylation of xanthosine, but does not have 1-N- or 3-N-methylation activity.

Coffea canephora (taxid: 49390)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	332
224101907	359	predicted protein [Populus trichocarpa]	1.0	0.924	0.584	1e-116
255570083	377	Benzoate carboxyl methyltransferase, put	1.0	0.880	0.556	1e-109
224101905	373	predicted protein [Populus trichocarpa]	0.996	0.887	0.552	1e-106
225424399	360	PREDICTED: probable S-adenosylmethionine	0.990	0.913	0.560	1e-105
449457458	376	PREDICTED: probable S-adenosylmethionine	0.996	0.880	0.531	1e-103
224111418	357	predicted protein [Populus trichocarpa]	0.993	0.924	0.517	1e-101
225424403	353	PREDICTED: probable S-adenosylmethionine	0.993	0.934	0.542	1e-101
297737617	347	unnamed protein product [Vitis vinifera]	0.963	0.922	0.549	1e-99
225424405	361	PREDICTED: probable S-adenosylmethionine	0.993	0.914	0.536	2e-99
225424401	353	PREDICTED: probable S-adenosylmethionine	0.963	0.906	0.549	2e-99

>gi|224101907|ref|XP_002312470.1| predicted protein [Populus trichocarpa] gi|222852290|gb|EEE89837.1| predicted protein [Populus trichocarpa]

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 194/332 (58%), Positives = 260/332 (78%)

Query: 1   RLAADAVKEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQDVLEVIKNKCH 60
           R +A+ VKEKI + I + L+   L  ASN  RLADLGC+VG NT   +QD+LE IK K  
Sbjct: 28  RRSANVVKEKIDEEIAKKLDFHNLPIASNTFRLADLGCSVGPNTFFHVQDLLEAIKQKYE 87

Query: 61  SQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHRLFPQSSIHFAHC 120
            Q  +S++PEFQVFFND+  NDFN LF +LPQ+R+Y++AGVPGSF+ RLFP+S +HF HC
Sbjct: 88  MQFHTSQIPEFQVFFNDQPMNDFNALFNNLPQERQYFAAGVPGSFYDRLFPESFLHFVHC 147

Query: 121 SYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIV 180
           S +LHWLSK+PE+LLD+NSPAWN+GRIHYTNA  EVVNAYASQFAKDMENFLNAR++E+V
Sbjct: 148 SISLHWLSKLPEQLLDKNSPAWNRGRIHYTNAPNEVVNAYASQFAKDMENFLNARSKELV 207

Query: 181 SGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASS 240
           SGGM+VII  GIP GM YS L NGVM++ M+   M++  E +++EA++DSFNLP Y+AS 
Sbjct: 208 SGGMIVIISQGIPNGMLYSELQNGVMFECMSLSLMDMVKEGVVSEAQVDSFNLPFYAASP 267

Query: 241 EEMVKLVDKNGHFSIKTVELTNPTSWLEGPIDIKAWTMHVRAAMEAMFSKHFRIEIIDEM 300
           +EM ++V++NG F+I+ +EL +P +WL+  I+I  W +H+RAAME  F KHF  E++D+ 
Sbjct: 268 DEMTEIVERNGFFNIERMELNDPAAWLKRRINIPEWVLHLRAAMEESFRKHFGGEVLDKF 327

Query: 301 FNRLIRRLFEFSDKVESGYKEKTQLFVILMRK 332
           F+RL ++L +FSD++E  Y+EKT L V+L R+
Sbjct: 328 FDRLTKKLSKFSDELELKYREKTLLLVVLKRQ 359

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570083|ref|XP_002526004.1| Benzoate carboxyl methyltransferase, putative [Ricinus communis] gi|223534736|gb|EEF36428.1| Benzoate carboxyl methyltransferase, putative [Ricinus communis]

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 187/336 (55%), Positives = 255/336 (75%), Gaps = 4/336 (1%)

Query: 1   RLAADAVKEKIVDAITRNLNVCEL-SSASNIIRLADLGCAVGSNTINAMQDVLEVIKNKC 59
           +LA + VK+KI +AIT+ L+V  L +++SN IR+ADLGCAVG NT   MQ+++ V+K K 
Sbjct: 37  KLATNVVKDKIEEAITKKLDVRSLLATSSNTIRVADLGCAVGPNTFTCMQNIVNVVKEKY 96

Query: 60  HSQCPSSK-LPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHRLFPQSSIHFA 118
            SQCP+S+ LP+FQVFFNDKTSNDFNTLFTSLP +REY++AGVPGSF+ RLFP+SS+H  
Sbjct: 97  RSQCPTSEILPDFQVFFNDKTSNDFNTLFTSLPLEREYFAAGVPGSFYQRLFPESSLHVV 156

Query: 119 HCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEE 178
            C YA+ WLSKVP+EL D++SPAWNKG+IHY +A +EV+ AYA+Q+A D ++FLNARA+E
Sbjct: 157 QCHYAIFWLSKVPDELQDKDSPAWNKGKIHYASAPDEVLRAYANQWAHDFDSFLNARAKE 216

Query: 179 IVSGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSA 238
           IV GG++++IMP +P GMPYS L NG+ ++L+A+I +++A   LI E E+D FN+PIY+A
Sbjct: 217 IVPGGLLIVIMPSVPDGMPYSELANGIFFNLLASILLDMAKRGLIREEEVDGFNMPIYAA 276

Query: 239 SSEEMVKLVDKNGHFSIKTVELTNPTSWLEGP--IDIKAWTMHVRAAMEAMFSKHFRIEI 296
              E V  V+KNGHF+I+ + LTNP  WL     +D+  +  H+RAA E MF KHF   I
Sbjct: 277 PPGEFVAGVEKNGHFNIEEIGLTNPAPWLTDDVHVDMIEFLRHIRAAWEGMFIKHFPPNI 336

Query: 297 IDEMFNRLIRRLFEFSDKVESGYKEKTQLFVILMRK 332
           +DE+F++L  RL E  + +E  YK+K Q   +L RK
Sbjct: 337 VDEIFDQLTIRLPEVFESMERAYKDKIQAHYVLQRK 372

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101905|ref|XP_002312469.1| predicted protein [Populus trichocarpa] gi|222852289|gb|EEE89836.1| predicted protein [Populus trichocarpa]

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 184/333 (55%), Positives = 250/333 (75%), Gaps = 2/333 (0%)

Query: 1   RLAADAVKEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQDVLEVIKNKCH 60
           ++AA+  K+ I +AI++ L+V  L S+S  IRLADLGCAVG NT +AMQ+++++IK KC 
Sbjct: 37  KIAANVAKDMIDEAISKKLDVKSLLSSSKTIRLADLGCAVGPNTFDAMQNIIDLIKLKCQ 96

Query: 61  SQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHRLFPQSSIHFAHC 120
           +  P+S +PEFQVFFND+ +NDFNTLF S+P +REY++AGVPGSF+ RLFP SS+H  + 
Sbjct: 97  THLPTSPMPEFQVFFNDQPANDFNTLFKSIPPKREYFAAGVPGSFYERLFPDSSLHVVYS 156

Query: 121 SYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIV 180
           SYALHWLSKVPE L D+NSPAWNKGRIH+ +AAEEV  AYA Q+A D+ NFLNARA EIV
Sbjct: 157 SYALHWLSKVPEGLEDKNSPAWNKGRIHHASAAEEVRRAYAVQWANDLSNFLNARAREIV 216

Query: 181 SGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASS 240
            GG++VI+   IP GM YS L NG+MY+ MA+I +++A   LI+E ++D+FNLP Y+A  
Sbjct: 217 PGGIIVIVTHSIPDGMEYSELANGMMYNCMASILLDIAKRGLISEEQVDAFNLPTYAAPP 276

Query: 241 EEMVKLVDKNGHFSIKTVELTNPTSWLEGP--IDIKAWTMHVRAAMEAMFSKHFRIEIID 298
            E V +V+ N +F+I T+  +NP+ WL     +D+  +  H+RAAME MF++HF  EI++
Sbjct: 277 GEFVSVVESNEYFNIVTMGESNPSPWLTDDVHVDMNEFVNHIRAAMEGMFNEHFAREIVN 336

Query: 299 EMFNRLIRRLFEFSDKVESGYKEKTQLFVILMR 331
           EMF RL  +L E S ++ES YK+K Q F +L R
Sbjct: 337 EMFERLEVKLSEISVEMESAYKDKIQAFYVLQR 369

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424399|ref|XP_002281366.1| PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g37990 [Vitis vinifera] gi|297737618|emb|CBI26819.3| unnamed protein product [Vitis vinifera]

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 186/332 (56%), Positives = 249/332 (75%), Gaps = 3/332 (0%)

Query: 1   RLAADAVKEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQDVLEVIKNKCH 60
           R A +A +  I +AI + L+V   SS  N  RLADLGC+VG NT  AMQ ++E ++ K  
Sbjct: 32  RQATNASRITIEEAIAKKLDVKCFSS--NPFRLADLGCSVGPNTFIAMQHIVEAVERKYL 89

Query: 61  SQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHRLFPQSSIHFAHC 120
           +Q   S++PEFQVFFND  +NDFNTLF SLP +R Y++ GVPGSFH RLFP+SSIHF   
Sbjct: 90  AQGLKSEMPEFQVFFNDHVANDFNTLFASLPTERRYFACGVPGSFHGRLFPESSIHFMFS 149

Query: 121 SYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIV 180
           S+ALHWLSKVPEELLD+NSPAWN+GRIHYT+  EEV +AYA+QF  DME FL+ARA+E+V
Sbjct: 150 SHALHWLSKVPEELLDKNSPAWNRGRIHYTSGPEEVSHAYAAQFEHDMEIFLSARAKELV 209

Query: 181 SGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASS 240
            GGM+V+++P +P G+P SH+  G+M+DL+ +  M++A E LI+EAE+DSFNLPIY+ S 
Sbjct: 210 FGGMIVLLIPALPTGIPTSHIPIGIMFDLLGSSLMDMAKEGLISEAEVDSFNLPIYATSL 269

Query: 241 EEMVKLVDKNGHFSIKTVELTNPTSWLEGPIDIKAWTMHVRAAMEAMFSKHFRIEIIDEM 300
           E+M  LV++NG+  I+ +EL +PTS     +  K +TM+ RA ME +F +HF   IIDE+
Sbjct: 270 EQMTSLVERNGYLIIERMELMDPTSK-HVAVSGKDYTMNFRAGMEGIFGEHFGSGIIDEV 328

Query: 301 FNRLIRRLFEFSDKVESGYKEKTQLFVILMRK 332
           F+RL ++  EFS ++ES +KE TQLFV+L RK
Sbjct: 329 FDRLYKKTVEFSHQLESSHKEGTQLFVVLRRK 360

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457458|ref|XP_004146465.1| PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g37990-like [Cucumis sativus] gi|449513682|ref|XP_004164393.1| PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g37990-like [Cucumis sativus]

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 178/335 (53%), Positives = 243/335 (72%), Gaps = 4/335 (1%)

Query: 1   RLAADAVKEKIVDAITRNLNVCELSSAS--NIIRLADLGCAVGSNTINAMQDVLEVIKNK 58
           RL A+  +EKI   I     + +LSS+S  N I LADLGCA G NT   MQ +++ +K  
Sbjct: 41  RLFANVEREKIDQEIKEKFEIVKLSSSSPSNTIVLADLGCAAGPNTFGTMQHIVKSMKET 100

Query: 59  CHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHRLFPQSSIHFA 118
             S CP S LPEFQVFFND+ +NDFNTLF SLP +R+Y++AGV GSFH RLFP++S+ F 
Sbjct: 101 FQSLCPISVLPEFQVFFNDQVTNDFNTLFQSLPVERDYFAAGVAGSFHQRLFPRASVQFV 160

Query: 119 HCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEE 178
           H SYA+HWLS+VPEE+ DE SPAWNKG IHY  AAE V +AYA QFAKDM +FL ARAEE
Sbjct: 161 HSSYAVHWLSRVPEEIRDERSPAWNKGHIHYLGAAEIVASAYAGQFAKDMGDFLRARAEE 220

Query: 179 IVSGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSA 238
           +V GG+MVII  G P G+  SHL +G++Y ++A+  ++++ E L++EA++DSFNLPIY  
Sbjct: 221 MVQGGIMVIITSGNPDGISASHLPSGLLYKVLASTLIDMSKEGLVSEAKVDSFNLPIYIT 280

Query: 239 SSEEMVKLVDKNGHFSIKTVELTNPTSWLEGPIDIKAWTMHVRAAMEAMFSKHF--RIEI 296
              EM +L++ +G+FSI+ +ELT PT+WL+G ID + W  H+RAAME +F++HF   +  
Sbjct: 281 CPSEMRQLIEDDGNFSIERMELTAPTTWLQGAIDTREWINHIRAAMEGIFTQHFGHNLTF 340

Query: 297 IDEMFNRLIRRLFEFSDKVESGYKEKTQLFVILMR 331
           I+++F R+I++L    +++ S   EK QLFV+L R
Sbjct: 341 IEQLFERVIQKLNHHYEEINSKLHEKVQLFVVLKR 375

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111418|ref|XP_002315848.1| predicted protein [Populus trichocarpa] gi|222864888|gb|EEF02019.1| predicted protein [Populus trichocarpa]

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 175/338 (51%), Positives = 248/338 (73%), Gaps = 8/338 (2%)

Query: 1   RLAADAVKEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQDVLEVIKNKCH 60
           R +A+AV+EKI +AI   L++  L S+     +AD GC+ G NT  AMQ++LE ++ K  
Sbjct: 22  RKSANAVREKIDEAIAEKLDMETLCSSGKSFHIADFGCSTGPNTFIAMQNILESVERKYK 81

Query: 61  SQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHRLFPQSSIHFAHC 120
           SQCP+ ++PEFQ FFND+ SNDFNTLFT+LP  R+Y+ AGVPGSFH RLFP SS+HFA+ 
Sbjct: 82  SQCPTRQIPEFQAFFNDQASNDFNTLFTTLPLDRQYFVAGVPGSFHGRLFPDSSLHFAYS 141

Query: 121 SYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIV 180
           S ALHWLSKVPEELLD+NSP++NKGRI+Y+N  ++VV+AY+SQFAKDME FL+ARA+E+V
Sbjct: 142 STALHWLSKVPEELLDKNSPSFNKGRIYYSNTLDKVVDAYSSQFAKDMEIFLDARAKELV 201

Query: 181 SGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASS 240
           +GGM+V+ MPG P G+P      G+  D + + F+++ NE +I+EA++DSFNLP+YSA+ 
Sbjct: 202 AGGMLVMTMPGQPNGIPCCQTGMGMTIDYLESCFLDMVNEGIISEAKVDSFNLPMYSATL 261

Query: 241 EEMVKLVDKNGHFSIKTVELT------NPTSWLEGPIDIKAWTMHVRAAMEAMFSKHFRI 294
           EEM +L+ +NG F+++ +ELT      NP S+       +   MH+RA +E + SKHF  
Sbjct: 262 EEMKELIQRNGSFNVEKMELTMANGESNPQSY--SSYSGRMLQMHLRAGIEEIISKHFGT 319

Query: 295 EIIDEMFNRLIRRLFEFSDKVESGYKEKTQLFVILMRK 332
           EIID++F+R   +  +FS +++S  ++   LFV+L RK
Sbjct: 320 EIIDDLFDRYAMKAEDFSHRLQSSERKGALLFVVLKRK 357

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424403|ref|XP_002281406.1| PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g37990 [Vitis vinifera] gi|297737615|emb|CBI26816.3| unnamed protein product [Vitis vinifera]

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 180/332 (54%), Positives = 244/332 (73%), Gaps = 2/332 (0%)

Query: 1   RLAADAVKEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQDVLEVIKNKCH 60
           R   +  +  I +AI + L+V   SS  N  RLADLGC+VG NT  AMQ ++E ++ +  
Sbjct: 24  RQDMNVSRTMIEEAIAKKLDVKCFSS--NPFRLADLGCSVGPNTFIAMQHIVEAVERRYL 81

Query: 61  SQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHRLFPQSSIHFAHC 120
           +Q   S++PEFQVFFND   NDFNTLF SLP +R Y++ GVPGSFH RLFP+SSIHF   
Sbjct: 82  AQGLKSEMPEFQVFFNDHVGNDFNTLFASLPTERRYFACGVPGSFHGRLFPESSIHFMFS 141

Query: 121 SYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIV 180
           S+ALHWLSKVPEELLD+NSPAWN+GRIHYT+  EEV +AYA+QF  DME FL+ARA+E+V
Sbjct: 142 SHALHWLSKVPEELLDKNSPAWNRGRIHYTSGPEEVSHAYAAQFEHDMEIFLSARAKELV 201

Query: 181 SGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASS 240
            GGM+V+++P +P G+P S    GVM+DL+ +  M++A E LI+EA++DSFNLPI+ AS 
Sbjct: 202 VGGMIVVLIPALPNGIPASQNPYGVMFDLLGSSLMDMAKEGLISEAQVDSFNLPIHLASP 261

Query: 241 EEMVKLVDKNGHFSIKTVELTNPTSWLEGPIDIKAWTMHVRAAMEAMFSKHFRIEIIDEM 300
           E+M +LV++N   +I+ +EL N  S L GPI+ K   M++RA +E +F++HF   IID++
Sbjct: 262 EQMTELVERNECLTIERMELVNSRSKLVGPINGKECAMYLRAGLEGIFAQHFGSGIIDQL 321

Query: 301 FNRLIRRLFEFSDKVESGYKEKTQLFVILMRK 332
           F+RL +++ E S K+ESG KE   LFV+L RK
Sbjct: 322 FDRLSKKIMESSHKLESGNKEGNLLFVVLRRK 353

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737617|emb|CBI26818.3| unnamed protein product [Vitis vinifera]

 Score =  369 bits (946), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 177/322 (54%), Positives = 240/322 (74%), Gaps = 2/322 (0%)

Query: 11  IVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPE 70
           I +AI + L+V  +  +SN  RLADLGC+VG NT  AMQ ++E ++ K  +Q   S++PE
Sbjct: 28  IEEAIAKKLDV--MCFSSNPFRLADLGCSVGPNTFIAMQHIVEAVERKYLAQGLKSEMPE 85

Query: 71  FQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHRLFPQSSIHFAHCSYALHWLSKV 130
           FQVFFND   NDFNTLF SLP +R Y++ GVPGSFH RLFP+SSIHF   S+ALHWLSKV
Sbjct: 86  FQVFFNDHVGNDFNTLFASLPTERRYFACGVPGSFHGRLFPESSIHFMFSSHALHWLSKV 145

Query: 131 PEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIMP 190
           PEELLD+NSPAWN+GRIHYT+  EEV +AYA+QF +DME FL+ARA+E+V GGM+V ++P
Sbjct: 146 PEELLDKNSPAWNRGRIHYTSGPEEVSHAYAAQFERDMEIFLSARAKELVVGGMIVFLIP 205

Query: 191 GIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKN 250
            +P G+P S     VM+DL+    M++A E LI+EA++DSFNLPI+ AS E+M ++VD+N
Sbjct: 206 ALPNGIPASQNPYCVMFDLLGASLMDMAKEGLISEAQVDSFNLPIHVASPEQMTEMVDRN 265

Query: 251 GHFSIKTVELTNPTSWLEGPIDIKAWTMHVRAAMEAMFSKHFRIEIIDEMFNRLIRRLFE 310
              +I+ +EL +  S L GPI+ K   M +RA +E +F++HF   IID++F+RL +++ E
Sbjct: 266 ECLTIERMELVDSRSKLVGPINGKECAMCLRAGLEGIFTQHFGSGIIDQLFDRLSKQIME 325

Query: 311 FSDKVESGYKEKTQLFVILMRK 332
            S ++ESG KE T LFV+L RK
Sbjct: 326 SSHQLESGNKEGTLLFVVLRRK 347

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424405|ref|XP_002284898.1| PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g37990-like [Vitis vinifera]

 Score =  369 bits (946), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 178/332 (53%), Positives = 235/332 (70%), Gaps = 2/332 (0%)

Query: 1   RLAADAVKEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQDVLEVIKNKCH 60
           R A DA +  I +AI + L+V   SS  N  RLADLGC+VG NT  +MQ ++E ++ K  
Sbjct: 32  REATDACRTMIEEAIAQKLDVKCFSS--NPFRLADLGCSVGPNTFISMQHIVEAVERKYL 89

Query: 61  SQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHRLFPQSSIHFAHC 120
            Q   S++PEFQVFFND  +NDFNTLF SLP +R Y++ GVPGSFH RLFP+SSIHF   
Sbjct: 90  EQGLKSQIPEFQVFFNDHVANDFNTLFASLPTERRYFACGVPGSFHGRLFPESSIHFMFS 149

Query: 121 SYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIV 180
           S+A+HWLSKVPEELLD+NSPAWN+GRIHYT+A +EV +AYA+QF  DME FL+ARA+E+V
Sbjct: 150 SHAIHWLSKVPEELLDKNSPAWNRGRIHYTSAPDEVSHAYAAQFDHDMEIFLSARAKELV 209

Query: 181 SGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASS 240
            GG++V+ M  +P G+P S + +GVM+DL+    M++    LI EA++DSFNLP+Y+ S 
Sbjct: 210 VGGIIVLTMAALPNGIPASRIPSGVMFDLLGASLMDMTKAGLINEAQVDSFNLPVYAPSQ 269

Query: 241 EEMVKLVDKNGHFSIKTVELTNPTSWLEGPIDIKAWTMHVRAAMEAMFSKHFRIEIIDEM 300
           E+M  LV +NG F+I+ +EL    S L  PI  K   MH+RA ME M +KHF   IIDE+
Sbjct: 270 EQMTDLVKRNGCFTIERMELVYRASKLVAPITGKECGMHLRAGMEGMIAKHFGSGIIDEL 329

Query: 301 FNRLIRRLFEFSDKVESGYKEKTQLFVILMRK 332
           F+   ++  EFS ++ES  +E  QLF  L RK
Sbjct: 330 FDTFSKKSVEFSHQLESSTREGAQLFAALRRK 361

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424401|ref|XP_002281378.1| PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g37990 [Vitis vinifera]

 Score =  368 bits (945), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 177/322 (54%), Positives = 240/322 (74%), Gaps = 2/322 (0%)

Query: 11  IVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPE 70
           I +AI + L+V  +  +SN  RLADLGC+VG NT  AMQ ++E ++ K  +Q   S++PE
Sbjct: 34  IEEAIAKKLDV--MCFSSNPFRLADLGCSVGPNTFIAMQHIVEAVERKYLAQGLKSEMPE 91

Query: 71  FQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHRLFPQSSIHFAHCSYALHWLSKV 130
           FQVFFND   NDFNTLF SLP +R Y++ GVPGSFH RLFP+SSIHF   S+ALHWLSKV
Sbjct: 92  FQVFFNDHVGNDFNTLFASLPTERRYFACGVPGSFHGRLFPESSIHFMFSSHALHWLSKV 151

Query: 131 PEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIMP 190
           PEELLD+NSPAWN+GRIHYT+  EEV +AYA+QF +DME FL+ARA+E+V GGM+V ++P
Sbjct: 152 PEELLDKNSPAWNRGRIHYTSGPEEVSHAYAAQFERDMEIFLSARAKELVVGGMIVFLIP 211

Query: 191 GIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKN 250
            +P G+P S     VM+DL+    M++A E LI+EA++DSFNLPI+ AS E+M ++VD+N
Sbjct: 212 ALPNGIPASQNPYCVMFDLLGASLMDMAKEGLISEAQVDSFNLPIHVASPEQMTEMVDRN 271

Query: 251 GHFSIKTVELTNPTSWLEGPIDIKAWTMHVRAAMEAMFSKHFRIEIIDEMFNRLIRRLFE 310
              +I+ +EL +  S L GPI+ K   M +RA +E +F++HF   IID++F+RL +++ E
Sbjct: 272 ECLTIERMELVDSRSKLVGPINGKECAMCLRAGLEGIFTQHFGSGIIDQLFDRLSKQIME 331

Query: 311 FSDKVESGYKEKTQLFVILMRK 332
            S ++ESG KE T LFV+L RK
Sbjct: 332 SSHQLESGNKEGTLLFVVLRRK 353

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	332
TAIR|locus:2200186	363	AT1G68040 [Arabidopsis thalian	0.993	0.909	0.494	1.4e-85
TAIR|locus:504956193	351	AT1G15125 [Arabidopsis thalian	0.990	0.937	0.373	1.6e-61
TAIR|locus:2144461	359	AT5G38100 [Arabidopsis thalian	0.984	0.910	0.388	5.5e-61
TAIR|locus:2166640	361	AT5G38780 [Arabidopsis thalian	0.978	0.900	0.374	3.2e-58
TAIR|locus:2082157	348	AT3G44840 [Arabidopsis thalian	0.963	0.919	0.366	1.7e-57
TAIR|locus:2082117	379	AT3G44870 "AT3G44870" [Arabido	0.954	0.836	0.354	9.9e-55
TAIR|locus:2082112	348	FAMT "farnesoic acid carboxyl-	0.960	0.916	0.349	1e-52
TAIR|locus:2033389	352	AT1G66720 [Arabidopsis thalian	0.954	0.900	0.347	9.5e-50
TAIR|locus:2033414	353	AT1G66690 "AT1G66690" [Arabido	0.969	0.912	0.350	4.1e-49
TAIR|locus:2033409	353	PXMT1 [Arabidopsis thaliana (t	0.972	0.915	0.348	6.7e-49

TAIR|locus:2200186 AT1G68040 [Arabidopsis thaliana (taxid:3702)]

 Score = 856 (306.4 bits), Expect = 1.4e-85, P = 1.4e-85
 Identities = 166/336 (49%), Positives = 231/336 (68%)

Query:     1 RLAADAVKEKIVDAITRNLNVCEL-SSASNIIRLADLGCAVGSNTINAMQDVLEVIKNKC 59
             R     +KEKI   +   LN   L SS SN  R+ADLGCA G NT   + ++++ I+   
Sbjct:    30 RKTTSLLKEKIDKLVLEKLNAKTLISSDSNTFRIADLGCATGPNTFFLVDNIIKSIETSL 89

Query:    60 HSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHRLFPQSSIHFAH 119
                  SSK PEF VFFND   NDFNTLFTSLPQ R Y + GVPGSF+ R+ PQSS+H   
Sbjct:    90 RKS-NSSK-PEFLVFFNDLPQNDFNTLFTSLPQDRSYLAVGVPGSFYGRVLPQSSVHIVV 147

Query:   120 CSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEI 179
                A HWLS VP+E+LD++S AWNKG++HY+NAA+EVV AY  QF +DME FL ARA EI
Sbjct:   148 TMGATHWLSSVPKEVLDKSSKAWNKGKVHYSNAADEVVKAYRDQFGRDMEKFLEARATEI 207

Query:   180 VSGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSAS 239
             VSGG++V+ M GIP GMP+S+L + +MY  MA +  ++ +E LI+E ++D+FN+PIYSA+
Sbjct:   208 VSGGLLVVGMCGIPKGMPFSNLADSIMYTSMADVLTQMHSEGLISEEQVDTFNIPIYSAT 267

Query:   240 SEEMVKLVDKNGHFSIKTVELTNPTSWLEGPI---DIKAWTMHVRAAMEAMFSKHFRIEI 296
              EE+  LV KNG F+++++EL +PT+WL+ P    D++ W + ++A M ++F  HF   +
Sbjct:   268 PEEVTVLVVKNGCFTVESMELMDPTAWLKRPTNVEDVRHWMVCIKATMGSLFINHFGEHL 327

Query:   297 IDEMFNRLIRRLFEFSDKVESGYKEKTQLFVILMRK 332
             +D++F+RL  +L   ++K+ES Y+EK  LF  L RK
Sbjct:   328 LDDVFDRLTAKLVGLTEKIESSYREKVMLFFALQRK 363

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

TAIR|locus:504956193 AT1G15125 [Arabidopsis thaliana (taxid:3702)]

 Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
 Identities = 124/332 (37%), Positives = 204/332 (61%)

Query:     1 RLAADAVKEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQDVLEVIKNKCH 60
             R A +A +  + + I   L++   S +S    +AD GC+ G NT+ A+  +++ + +K  
Sbjct:    18 RGAIEAAEALLRNEINARLDITNHSFSS--FTIADFGCSSGPNTVIAVDIIIQALYHKFT 75

Query:    61 SQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHRLFPQSSIHFAHC 120
             S  P++  P+FQVFFND +  DFN LF  LP QR Y+ AGVPGSF+  LFP++ ++ A+ 
Sbjct:    76 SSLPNTTTPQFQVFFNDVSHTDFNALFALLPPQRPYFVAGVPGSFYGNLFPKAHLNLAYS 135

Query:   121 SYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIV 180
             S AL WLS +P EL D +SPA+N+GRIHYT A+ EV  AY+SQ+ KD++ FL+AR++E+ 
Sbjct:   136 SCALCWLSDLPSELTDTSSPAYNRGRIHYTGASAEVAQAYSSQYKKDIKLFLHARSQELA 195

Query:   181 SGGMMVIIMPGIPYG-MPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSAS 239
               G+M +I+PG+P G +     + G  +DL+ +  M++A E +I E E++SFNLPIY  +
Sbjct:   196 ENGLMALIVPGVPDGFLDCQEASTGSEFDLLGSCLMDMAKEGIIEEEEVNSFNLPIYYTT 255

Query:   240 SEEMVKLVDKNGHFSIKTVELTNPTSWLEGPIDIKAWTMHVRAAMEAMFSKHFRIEIIDE 299
              +E+  ++  NG   I  +E        +   D+++  +++RA +E +   HF  +I+D+
Sbjct:   256 PKELEDIIRSNGELKIDKMETLGSMDAQDTMPDLESRVLYLRAVLEGLVRTHFGHQILDD 315

Query:   300 MFNRLIRRLFEFSDKVESGYKEKTQLFVILMR 331
             +F+R   +L   S  ++    +   +F +L R
Sbjct:   316 LFDRYALKLAHSSFILQPQTHKSIMIFALLSR 347

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

TAIR|locus:2144461 AT5G38100 [Arabidopsis thaliana (taxid:3702)]

 Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
 Identities = 131/337 (38%), Positives = 202/337 (59%)

Query:     1 RLAADAVKEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQDVLEVIKNK-C 59
             + A  +  EK    I   L++ +LSS     R+AD GC++G NT +  Q +++ +K+K  
Sbjct:    27 KAAISSAVEKTRRCIFEKLDL-QLSSDFGTFRIADFGCSIGPNTFHVAQSIIDTVKSKRL 85

Query:    60 HSQCPSSKLP-EFQVFFNDKTSNDFNTLFTSLP--QQREYYSAGVPGSFHHRLFPQSSIH 116
                  +S +P EFQVFFND+ +NDFNTLF + P   +REY+S GVPGSF+ R+ P++SIH
Sbjct:    86 EESTENSLVPLEFQVFFNDQPTNDFNTLFRTQPLSPEREYFSVGVPGSFYGRVLPRNSIH 145

Query:   117 FAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARA 176
               H SY  HWLSKVP+ + D+ S AWNK  I   N  EEV  AY  QF KDME FL+ARA
Sbjct:   146 IGHTSYTTHWLSKVPDNVCDKKSMAWNKNYIQCNNLLEEVTKAYKVQFIKDMEIFLDARA 205

Query:   177 EEIVSGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIY 236
             EE+V GG+M++I   +P G+       G + D +    M++A   + +E ++D F+LP+Y
Sbjct:   206 EELVPGGLMIVIGECLPDGVSLYETWQGYVMDTIGDCLMDMAKSGITSEEKIDLFSLPVY 265

Query:   237 SASSEEMVKLVDKNGHFSIKTVELTNPTSWLEG-PIDIKAWTMHVRAAMEAMFSKHFRIE 295
                  E+   ++KNG F+I+ +E T+    LEG P+     T   RA +  +  KHF   
Sbjct:   266 FPQFSELKGEIEKNGSFTIELMETTSHP--LEGKPLTNDFITSTFRAFLTTIIEKHFGDG 323

Query:   296 IIDEMFNRLIRRLFEFSDKVESGYKEKTQLFVILMRK 332
             ++DE+F RL ++L   +  ++   ++K  ++ I++++
Sbjct:   324 VVDELFYRLAKKLS--NHPIDFEMRKKQVVYCIVLKR 358

GO:0008168 "methyltransferase activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2166640 AT5G38780 [Arabidopsis thaliana (taxid:3702)]

 Score = 598 (215.6 bits), Expect = 3.2e-58, P = 3.2e-58
 Identities = 125/334 (37%), Positives = 199/334 (59%)

Query:     5 DAVKEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQDVLEVIKNKC--HSQ 62
             D V+EK    I  NL++  ++   +   +AD GC++G NT +A+Q++++++K K    SQ
Sbjct:    31 DGVQEKARQYILENLDLLNMNPNLSTFTIADFGCSIGPNTFHAVQNIIDIVKLKHLKESQ 90

Query:    63 CPSSKLP-EFQVFFNDKTSNDFNTLFTSLP--QQREYYSAGVPGSFHHRLFPQSSIHFAH 119
               S   P EFQV+FND  +NDFNTLF + P   ++EY+S GVPGSF+ R+ P++SIH  +
Sbjct:    91 EDSRVAPLEFQVYFNDLPNNDFNTLFRTQPPSSKQEYFSVGVPGSFYGRVLPRNSIHIGN 150

Query:   120 CSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEI 179
              S+  HWLSKVPEE+ D+NS AWNK  IH  N  EEV  AY  QF KDM  FL ARAEE+
Sbjct:   151 TSFTTHWLSKVPEEVCDKNSLAWNKNYIHCNNLIEEVTEAYKVQFEKDMGVFLKARAEEL 210

Query:   180 VSGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSAS 239
             V GG+M+ +   +P G+      +G++ D +     ++A   + TE +++ FNLP+Y   
Sbjct:   211 VPGGLMITLGQCLPDGVAMYETWSGIVKDTIGDCLQDMATLGVTTEEKIEMFNLPVYFPQ 270

Query:   240 SEEMVKLVDKNGHFSIKTVEL-TNPTSWLEGPIDIKAWTMHVRAAMEAMFSKHFRIEIID 298
               E+   +++N  F+I+ +E+ ++P   ++  +     T   RA +  +  +HF   ++D
Sbjct:   271 VSELKGAIEQNIRFTIEMMEIVSHPLEAVQ--LSNNFITSMYRAILSTVIERHFGGSVVD 328

Query:   299 EMFNRLIRRLFEFSDKVESGYKEKTQLFVILMRK 332
             E+F +  ++L E     E   K++    ++L RK
Sbjct:   329 ELFRQFAKKLSEHPIDFEK-CKKQMVYHIVLKRK 361

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2082157 AT3G44840 [Arabidopsis thaliana (taxid:3702)]

 Score = 591 (213.1 bits), Expect = 1.7e-57, P = 1.7e-57
 Identities = 120/327 (36%), Positives = 208/327 (63%)

Query:     5 DAVKEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCP 64
             +A  EKI +AI+  LN+ +L  ASN++ +AD GC+ G NT  A+Q +++ +++K   +  
Sbjct:    28 EAATEKINEAISTKLNI-DL--ASNLVNIADFGCSTGPNTFRAVQTIIDAVEHKYQQENN 84

Query:    65 SSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHRLFPQSSIHFAHCSYAL 124
               ++ EFQVFFND ++NDFNTLF +LP  R+Y++ GVP SF  R+ P+SS+H    SY+L
Sbjct:    85 LEEI-EFQVFFNDSSNNDFNTLFKTLPPARKYFATGVPASFFGRVLPRSSLHVGVSSYSL 143

Query:   125 HWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGM 184
             H+LSK+P+++ D +S AWNK  IH T  ++EVV AY  Q+  DME+FL ARA+E+VSGG+
Sbjct:   144 HFLSKIPKKIKDCDSHAWNKD-IHCTGFSKEVVRAYLDQYKIDMESFLTARAQELVSGGL 202

Query:   185 MVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMV 244
             + ++   +P G+  S   NG+M D + +   ++A + LI + +LD+F LPIY A + E+ 
Sbjct:   203 LFLLGSCLPNGVQMSETLNGMMIDCIGSSLNDIAKQGLIDQEKLDTFKLPIYVAYAGEIK 262

Query:   245 KLVDKNGHFSIKTVELTNPTSWLEGPIDIKAWTMHVRAAMEAMFSKHFRIEIIDEMFNRL 304
             ++++ N +++I+  ++ +  +  E P+D +  T+  +  +  + + HF   ++++ F  +
Sbjct:   263 QIIEDNVYYTIERFDIISQENE-EIPLDPEFLTVSFKVTVGGIVASHFGQHVMEKTFEVV 321

Query:   305 IRRLFEFSDKVESGYKEKTQLFVILMR 331
               +  E   ++ +  K   Q  ++L R
Sbjct:   322 KTKTQEMLPQLANA-KPGMQYLIVLKR 347

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2082117 AT3G44870 "AT3G44870" [Arabidopsis thaliana (taxid:3702)]

 Score = 565 (203.9 bits), Expect = 9.9e-55, P = 9.9e-55
 Identities = 116/327 (35%), Positives = 199/327 (60%)

Query:     5 DAVKEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCP 64
             +A KEKI +AI+  L++      SN++ +AD GC+ G NT  A+Q +++ ++NK   +  
Sbjct:    28 EAAKEKINEAISTKLDI---DFTSNLVNIADFGCSSGPNTFTAVQTLIDAVENKYKKE-- 82

Query:    65 SSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHRLFPQSSIHFAHCSYAL 124
              S + EFQVFFND ++NDFNTLF +LP  R Y+++GVPGSF  R+ P++S+H    +Y+L
Sbjct:    83 -SNI-EFQVFFNDSSNNDFNTLFKTLPPARLYFASGVPGSFFGRVLPRNSLHLGVSAYSL 140

Query:   125 HWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGM 184
             H++SK+P+E+ D +SP WNK  IH + +++EV   Y  Q+  D+ +FLNARA+E+VSGG+
Sbjct:   141 HFISKIPKEVKDRDSPVWNKD-IHCSGSSKEVAKLYLGQYKIDVGSFLNARAQELVSGGL 199

Query:   185 MVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMV 244
             ++++    P G+       G+M D +     E+AN+ LI + +LD+F LPIY+  ++E+ 
Sbjct:   200 LLLLGSCRPNGVQMFETVEGMMIDFIGASLNEIANQGLIDQQKLDTFKLPIYAPQADELK 259

Query:   245 KLVDKNGHFSIKTVELTNPTSWLEGPIDIKAWTMHVRAAMEAMFSKHFRIEIIDEMFNRL 304
             ++++ NG F+I+  E        E P+D +  T+  +  +    +  F  + +++ F  +
Sbjct:   260 QIIEDNGCFTIEVFENIIHAKG-EYPLDPEFLTVSFKVTVGGSVASLFGQDGMEKTFELV 318

Query:   305 IRRLFEFSDKVESGYKEKTQLFVILMR 331
               +  E   ++    K   Q  ++L R
Sbjct:   319 KEKTQEMLPQIAKA-KPGMQYLIVLRR 344

GO:0005575 "cellular_component" evidence=ND

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

TAIR|locus:2082112 FAMT "farnesoic acid carboxyl-O-methyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
 Identities = 114/326 (34%), Positives = 196/326 (60%)

Query:     6 AVKEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPS 65
             A KEKI +AI+  L++      SN++ +AD GC+ G NT  A+Q +++ ++NK   +   
Sbjct:    29 AAKEKINEAISTKLDI---DFTSNLVNIADFGCSSGPNTFTAVQTLIDAVENKYKKESNI 85

Query:    66 SKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHRLFPQSSIHFAHCSYALH 125
               + EFQVFFND ++NDFNTLF +LP  R Y+++GVPGSF  R+ P++S+H    SY+LH
Sbjct:    86 EGI-EFQVFFNDSSNNDFNTLFKTLPPARLYFASGVPGSFFGRVLPKNSLHVGVSSYSLH 144

Query:   126 WLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMM 185
             ++SKVP+E+ D +S  WNK  IH + +++EVV  Y  Q+  D+ +FL ARA+E+VSGG++
Sbjct:   145 FVSKVPKEIKDRDSLVWNKD-IHCSGSSKEVVKLYLGQYKIDVGSFLTARAQELVSGGLL 203

Query:   186 VIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVK 245
             +++    P G+       G+M D + +   E+AN+ LI + +LD+F LPIY+ + +E+ +
Sbjct:   204 LLLGSCRPTGVQMFETVEGMMIDFIGSSLNEIANQGLIDQQKLDTFKLPIYAPNVDELKQ 263

Query:   246 LVDKNGHFSIKTVELTNPTSWLEGPIDIKAWTMHVRAAMEAMFSKHFRIEIIDEMFNRLI 305
             +++ N  F+I+  E  +     E P+D +  T   +  +    +  F  + +++ +  + 
Sbjct:   264 IIEDNKCFTIEAFEKISHAKG-EYPLDPEYLTSAFKVTVGGSVASLFGQDGMEKTYELVK 322

Query:   306 RRLFEFSDKVESGYKEKTQLFVILMR 331
              +  E   ++    K   Q  ++L R
Sbjct:   323 EKTQEMLPQIAKA-KPGMQYLIVLRR 347

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0019010 "farnesoic acid O-methyltransferase activity" evidence=IDA

TAIR|locus:2033389 AT1G66720 [Arabidopsis thaliana (taxid:3702)]

 Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
 Identities = 115/331 (34%), Positives = 192/331 (58%)

Query:     6 AVKEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQDVLEVIKNKC---HSQ 62
             A K+KI   I+ NL+   L+  SN   +AD GCA G NT  A+Q++++ ++ K      Q
Sbjct:    31 AAKDKINAVISTNLS---LNLISNRFSVADFGCASGPNTFVAVQNIIDAVEEKYLRETGQ 87

Query:    63 CPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHRLFPQSSIHFAHCSY 122
              P   + EFQV FND ++NDFNTLF  LP  R YYSA +PGSF  R+ P+ SIH    +Y
Sbjct:    88 NPDDNI-EFQVLFNDLSNNDFNTLFQGLPSGRRYYSAAIPGSFFDRVLPKHSIHIGVMNY 146

Query:   123 ALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSG 182
             A  + SK+P+ + D NSP WN+  +H T    +V  AY  QF+ D +N L+ARAEE+V  
Sbjct:   147 AFQFTSKIPKGISDRNSPLWNRD-MHCTGFNNKVKKAYLDQFSLDSKNILDARAEELVPE 205

Query:   183 GMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEE 242
             G+M+++   +  G+  S    G++ DL+     +LA + +I + +++SFN+ +Y A   E
Sbjct:   206 GLMLLLGSCLRDGIKMSETYRGIVLDLIGASLNDLAQQGVIEKDKVESFNITLYIAEEGE 265

Query:   243 MVKLVDKNGHFSIKTVE-LTNPTSWLEGPIDIKAWTMHVRAAMEAMFSKHFRIEIIDEMF 301
             + +++++NG F+I+  E +  P    E  +D K   + +++A   + S HF  E + + F
Sbjct:   266 LRQIIEENGKFTIEAFEDIIQPNG--ES-LDPKILAVSLKSAFGGILSAHFGAEAMMKAF 322

Query:   302 NRLIRRLFEFSDKVESGYKEKTQLFVILMRK 332
               +  +  +   ++++   + T  ++I++RK
Sbjct:   323 ELVEAKAHQEFSRLQNA--KPTMQYLIVLRK 351

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

TAIR|locus:2033414 AT1G66690 "AT1G66690" [Arabidopsis thaliana (taxid:3702)]

 Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
 Identities = 118/337 (35%), Positives = 194/337 (57%)

Query:     1 RLAADAVKEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQDVLEVIKNKC- 59
             R   +A K+K+ +AI+ NL   +L   SN   +AD GCA G NT  A+Q++++ ++ K  
Sbjct:    26 RALLEAAKDKMTEAISANL---DLDLISNRFIVADFGCASGPNTFVAVQNIIDAVEEKYL 82

Query:    60 --HSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHRLFPQSSIHF 117
                 Q P   + EFQV FND   NDFNTLF +LP  R Y+SAGVPGSF +R+ P+ S H 
Sbjct:    83 RETGQNPEDNI-EFQVLFNDLRINDFNTLFQTLPPGRRYFSAGVPGSFFNRVLPKQSFHI 141

Query:   118 AHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAE 177
             A  SYA  + SK+P+ ++D +SP WNK  +  T     V  AY  Q++ D +N L+ARAE
Sbjct:   142 AVMSYAFLFTSKIPKGIMDRDSPLWNKD-MQCTGFNPAVKKAYLEQYSIDTKNLLDARAE 200

Query:   178 EIVSGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYS 237
             E++ GG+M+++   +  G+  S    G + D +     +LA + +  + ++D+F   IY 
Sbjct:   201 ELMPGGLMLLLGSCMRDGVKMSETLKGTVMDFIGESLNDLAQKGVTEQEKVDTFKTSIYF 260

Query:   238 ASSEEMVKLVDKNGHFSIKTVE-LTNPTSWLEGPIDIKAWTMHVRAAMEAMFSKHFRIEI 296
             A   E+ +++++NG F+I+  E + +  +  E P+D K   +  +A   A  S HF IE+
Sbjct:   261 AEQGEIRQIIEENGKFTIEAFEDIIHSKN--EFPLDPKTLAISFKALYGAFISAHFGIEV 318

Query:   297 IDEMFNRLIRRLFEFSDKVESGYKEKTQL-FVILMRK 332
             + + F  L+    +  +++   +K K  + ++I++RK
Sbjct:   319 MRKAFE-LVE--VKAREQISRLHKVKPGMQYLIVLRK 352

GO:0005575 "cellular_component" evidence=ND

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

TAIR|locus:2033409 PXMT1 [Arabidopsis thaliana (taxid:3702)]

 Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
 Identities = 117/336 (34%), Positives = 190/336 (56%)

Query:     1 RLAADAVKEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQDVLEVIKNKCH 60
             R   +A K+K+  AI+ NL   +L   SN   +AD GCA G NT  A+Q++++ ++ K  
Sbjct:    26 RALLEATKDKMTKAISANL---DLDLISNRFIVADFGCASGPNTFVAVQNIIDAVEEKYR 82

Query:    61 ---SQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHRLFPQSSIHF 117
                 Q P+  + EFQV FND + NDFNTLF +LP  R Y+SAGVPGSF  R+ P+ S H 
Sbjct:    83 RETGQNPADNI-EFQVLFNDFSLNDFNTLFQTLPPGRRYFSAGVPGSFFERVLPKESFHI 141

Query:   118 AHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAE 177
                SYA H+ SK+P+ ++D +SP WNK  +  T     V  AY  Q++ D +  L+ARAE
Sbjct:   142 GVMSYAFHFTSKIPKGIMDRDSPLWNKD-MQCTGFNPAVKKAYLDQYSIDTKILLDARAE 200

Query:   178 EIVSGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYS 237
             E+V GG+M+++   +  G+  S    G + D +     +LA + +  + ++D+F   IY 
Sbjct:   201 ELVPGGLMLLLGSCLRDGVKMSETPKGTVMDFIGESLSDLAKQGVTEQEKVDTFRTSIYF 260

Query:   238 ASSEEMVKLVDKNGHFSIKTVE-LTNPTSWLEGPIDIKAWTMHVRAAMEAMFSKHFRIEI 296
             A   E+ +++++NG F+I+  E + +  +  E P D K   +  +A   A  S HF +E+
Sbjct:   261 AEQGEIRQIIEENGKFTIEAFEDIIHAKN--EFPFDPKTLAISFKAFYGAFISAHFGVEV 318

Query:   297 IDEMFNRLIRRLFEFSDKVESGYKEKTQLFVILMRK 332
             + + F  +  +  E   ++ +  K   Q ++I++RK
Sbjct:   319 MRKAFELVEVKAREQISRLHNS-KPGMQ-YLIVLRK 352

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS;IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.1.1.141	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.VIII.1099.1 hypothetical protein (350 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	332
pfam03492	331	pfam03492, Methyltransf_7, SAM dependent carboxyl	1e-122
PLN02668	386	PLN02668, PLN02668, indole-3-acetate carboxyl meth	5e-62

>gnl|CDD|217591 pfam03492, Methyltransf_7, SAM dependent carboxyl methyltransferase

 Score =  353 bits (907), Expect = e-122
 Identities = 139/336 (41%), Positives = 200/336 (59%), Gaps = 19/336 (5%)

Query: 11  IVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPE 70
           + +AI+  L     +   N I++ADLGC+ G NT  A+ ++++ ++ K   +      PE
Sbjct: 1   LEEAISELLL---RNLFPNSIKIADLGCSSGPNTFLAVSNIIDTVEKKYQKENILE-PPE 56

Query: 71  FQVFFNDKTSNDFNTLFTSLPQQ----REYYSAGVPGSFHHRLFPQSSIHFAHCSYALHW 126
           FQVFFND  SNDFNTLF  LP      R Y+ +GVPGSF+ RLFP++S+HF H SY+LHW
Sbjct: 57  FQVFFNDLPSNDFNTLFKLLPPFQKKKRSYFVSGVPGSFYGRLFPRNSLHFVHSSYSLHW 116

Query: 127 LSKVPEELLDENSPAWNKGRIHYTNA-AEEVVNAYASQFAKDMENFLNARAEEIVSGGMM 185
           LS+VP+ L D+ SPAWNKG I+ + A  EEV  AY  QF KD   FL ARAEE+VSGG+M
Sbjct: 117 LSQVPKGLEDKESPAWNKGNIYISGASPEEVYKAYLDQFKKDFSLFLRARAEELVSGGLM 176

Query: 186 VIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVK 245
           V+   G P  +  S    G+ +DL+     +L +E LI E +LDSFN+PIY+ S EE+ +
Sbjct: 177 VLTFLGRP-SVDPSETECGIFWDLLGDALNDLVSEGLIEEEKLDSFNIPIYAPSPEEVKE 235

Query: 246 LVDKNGHFSIKTVELTNPTSWL---------EGPIDIKAWTMHVRAAMEAMFSKHFRIEI 296
           +++K G F+I+ +E+    +           +   D +     VRA +E M   HF  +I
Sbjct: 236 IIEKEGSFTIERLEIIKHPNGEVPWDESDSEDKVEDGRFVASSVRAVVEPMLVAHFGEDI 295

Query: 297 IDEMFNRLIRRLFEFSDKVESGYKEKTQLFVILMRK 332
           +D++F+R  ++L E   K     K+   + V L RK
Sbjct: 296 MDKLFDRYAKKLSEHLSKELQNAKKTINVVVSLSRK 331

This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesised through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyzes the second step to produce theobromine. Length = 331

>gnl|CDD|178273 PLN02668, PLN02668, indole-3-acetate carboxyl methyltransferase

 Score =  202 bits (514), Expect = 5e-62
 Identities = 116/316 (36%), Positives = 165/316 (52%), Gaps = 35/316 (11%)

Query: 20  NVCELSSASNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKL--PEFQVFFND 77
           NV   SS        DLGC+ GSNTI+    +++VI      +  S+ L  PEF  FF+D
Sbjct: 54  NVHLNSSPEVPFTAVDLGCSSGSNTIH----IIDVIVKHMSKRYESAGLDPPEFSAFFSD 109

Query: 78  KTSNDFNTLFTSLPQ----------------QREYYSAGVPGSFHHRLFPQSSIHFAHCS 121
             SNDFNTLF  LP                  R Y++AGVPGSF+ RLFP  SI   H +
Sbjct: 110 LPSNDFNTLFQLLPPLANYGGSMEECLAASGHRSYFAAGVPGSFYRRLFPARSIDVFHSA 169

Query: 122 YALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVS 181
           ++LHWLS+VPE + D+ S A+NKGR+    A+E   NAY  QF  D+  FL ARA+E+  
Sbjct: 170 FSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKR 229

Query: 182 GGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFM----ELANEQLITEAELDSFNLPIYS 237
           GG M ++  G     P      G+++    T F     +L  E L+T  + DSFN+P+Y+
Sbjct: 230 GGAMFLVCLGRTSVDPTDQGGAGLLF---GTHFQDAWDDLVQEGLVTSEKRDSFNIPVYA 286

Query: 238 ASSEEMVKLVDKNGHFSIKTVELTNPTSWL--EGPIDI----KAWTMHVRAAMEAMFSKH 291
            S ++  ++V+ NG F+I  +E+    S L    P D     +A     R+    +   H
Sbjct: 287 PSLQDFKEVVEANGSFAIDKLEVFKGGSPLVVNEPDDAAEVGRAMANSCRSVAGVLVDAH 346

Query: 292 FRIEIIDEMFNRLIRR 307
              E+ +E+F R+ RR
Sbjct: 347 IGEELSNELFLRVERR 362

Length = 386

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	332
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	100.0
PLN02668	386	indole-3-acetate carboxyl methyltransferase	100.0
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.34
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.34
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.0
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	98.99
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	98.96
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	98.91
PLN02336	475	phosphoethanolamine N-methyltransferase	98.86
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	98.86
TIGR00740	239	methyltransferase, putative. A simple BLAST search	98.86
PRK10258	251	biotin biosynthesis protein BioC; Provisional	98.8
PRK08317	241	hypothetical protein; Provisional	98.77
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	98.74
PLN02244	340	tocopherol O-methyltransferase	98.74
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	98.73
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	98.72
PLN02233	261	ubiquinone biosynthesis methyltransferase	98.71
TIGR00452	314	methyltransferase, putative. Known examples to dat	98.7
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	98.68
PRK11207	197	tellurite resistance protein TehB; Provisional	98.67
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	98.67
PLN02490	340	MPBQ/MSBQ methyltransferase	98.57
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	98.56
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	98.54
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	98.48
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	98.47
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	98.45
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	98.43
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	98.42
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	98.41
PRK12335	287	tellurite resistance protein TehB; Provisional	98.39
PRK06202	232	hypothetical protein; Provisional	98.33
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	98.31
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	98.29
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.26
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	98.18
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	98.17
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	98.14
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	98.11
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	98.06
PLN02336	475	phosphoethanolamine N-methyltransferase	98.04
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	98.04
PRK05785	226	hypothetical protein; Provisional	98.03
PRK06922	677	hypothetical protein; Provisional	98.02
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	97.94
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	97.92
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	97.92
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	97.87
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	97.87
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	97.86
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	97.83
KOG2940	325	consensus Predicted methyltransferase [General fun	97.82
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	97.81
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	97.78
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	97.77
TIGR03438	301	probable methyltransferase. This model represents	97.73
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	97.72
KOG2361	264	consensus Predicted methyltransferase [General fun	97.69
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	97.64
PLN02585	315	magnesium protoporphyrin IX methyltransferase	97.64
KOG3010	261	consensus Methyltransferase [General function pred	97.62
PRK04266	226	fibrillarin; Provisional	97.6
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	97.58
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	97.58
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	97.57
COG4123	248	Predicted O-methyltransferase [General function pr	97.56
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	97.54
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	97.5
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	97.48
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	97.46
PLN02232	160	ubiquinone biosynthesis methyltransferase	97.46
PRK14967	223	putative methyltransferase; Provisional	97.45
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	97.44
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	97.42
PRK13255	218	thiopurine S-methyltransferase; Reviewed	97.41
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	97.4
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	97.4
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	97.38
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	97.37
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	97.34
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	97.34
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	97.32
PHA03411	279	putative methyltransferase; Provisional	97.3
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	97.26
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	97.19
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	97.18
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	97.16
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	97.15
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	97.14
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	97.13
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	97.12
PTZ00146	293	fibrillarin; Provisional	97.11
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	97.06
TIGR00438	188	rrmJ cell division protein FtsJ.	97.05
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	96.9
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	96.87
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	96.83
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	96.83
PRK14968	188	putative methyltransferase; Provisional	96.78
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	96.77
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	96.76
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	96.73
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	96.67
KOG2904	328	consensus Predicted methyltransferase [General fun	96.64
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	96.63
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	96.48
PRK07402	196	precorrin-6B methylase; Provisional	96.3
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	96.25
PRK00811	283	spermidine synthase; Provisional	96.22
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	96.22
KOG4300	252	consensus Predicted methyltransferase [General fun	96.18
PLN03075	296	nicotianamine synthase; Provisional	96.17
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	96.16
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	96.16
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	96.11
PRK14903	431	16S rRNA methyltransferase B; Provisional	96.04
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	95.73
PRK10901	427	16S rRNA methyltransferase B; Provisional	95.73
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	95.71
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	95.69
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	95.67
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	95.38
PRK14902	444	16S rRNA methyltransferase B; Provisional	95.25
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	95.02
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	94.99
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	94.98
PRK04457	262	spermidine synthase; Provisional	94.91
PRK14904	445	16S rRNA methyltransferase B; Provisional	94.91
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	94.81
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	94.79
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	94.42
PRK14901	434	16S rRNA methyltransferase B; Provisional	94.09
PLN02366	308	spermidine synthase	93.88
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	93.64
KOG2899	288	consensus Predicted methyltransferase [General fun	93.49
COG2890	280	HemK Methylase of polypeptide chain release factor	93.22
PRK03612	521	spermidine synthase; Provisional	93.14
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	93.03
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	92.96
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	92.89
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	92.68
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	92.66
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	92.43
PHA03412	241	putative methyltransferase; Provisional	92.3
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	92.18
PLN02672	1082	methionine S-methyltransferase	91.76
KOG1271	227	consensus Methyltransferases [General function pre	91.35
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	91.04
PRK01581	374	speE spermidine synthase; Validated	90.49
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	90.2
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	90.1
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	89.82
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	89.35
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	89.26
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	88.86
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	87.01
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	86.71
PRK13256	226	thiopurine S-methyltransferase; Reviewed	86.57
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	86.28
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	86.19
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	86.13
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	85.96
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	85.27
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	83.11
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	83.0
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	82.98
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	82.44
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	81.9
PRK11524	284	putative methyltransferase; Provisional	81.33

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=100.00  E-value=1.7e-95  Score=703.55  Aligned_cols=317  Identities=44%  Similarity=0.739  Sum_probs=266.4

Q ss_pred             HHHHHHHhhhhcccCCCCCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcC
Q 044174           11 IVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSL   90 (332)
Q Consensus        11 l~~ai~~~~~~~~~~~~~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l   90 (332)
                      ||+||++++....   .+++++|||||||+|+||+.+++.||++|+++|++.+ ..++|+|||||||||+||||+||++|
T Consensus         1 ~~~ai~~~~~~~~---~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~-~~~~~e~~v~~nDlP~NDFn~lF~~l   76 (334)
T PF03492_consen    1 LEEAIKELYNSSN---NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSN-NQPPPEFQVFFNDLPSNDFNTLFKSL   76 (334)
T ss_dssp             -HHHHHHHHHSTT---TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT--SS--EEEEEEEE-TTS-HHHHHHCH
T ss_pred             ChHHHHHHHhcCC---CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhc-CCCCCeEEEEeCCCCCccHHHHHHhC
Confidence            6899999986442   6889999999999999999999999999999998754 13689999999999999999999999


Q ss_pred             ccc-------ccceeeecCCccccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCC-CHHHHHHHHH
Q 044174           91 PQQ-------REYYSAGVPGSFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNA-AEEVVNAYAS  162 (332)
Q Consensus        91 ~~~-------~~~f~~~vpgSFy~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~-~~~v~~ay~~  162 (332)
                      |++       ++||++|||||||+||||++|+||+||++||||||++|+.+.+..+|+||||+||++++ +++|.+||++
T Consensus        77 ~~~~~~~~~~~~~f~~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~  156 (334)
T PF03492_consen   77 PSFQQSLKKFRNYFVSGVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAK  156 (334)
T ss_dssp             HHHHHHHHHTTSEEEEEEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHH
T ss_pred             hhhhhccCCCceEEEEecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHH
Confidence            987       58999999999999999999999999999999999999999999999999999999955 9999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccCCeEEEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHH
Q 044174          163 QFAKDMENFLNARAEEIVSGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEE  242 (332)
Q Consensus       163 q~~~d~~~fL~~Ra~EL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E  242 (332)
                      ||++||.+||++||+||||||+||++++||++.++... +.+.+|++|+++|+|||.||+|++|++|+||+|+|+||.+|
T Consensus       157 Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~gr~~~~~~~~-~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eE  235 (334)
T PF03492_consen  157 QFQKDFSSFLKARAEELVPGGRMVLTFLGRDEEDPSST-GSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEE  235 (334)
T ss_dssp             HHHHHHHHHHHHHHHHEEEEEEEEEEEEE-STSSTTST-TCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHH
T ss_pred             HHHHHHHHHHHHhhheeccCcEEEEEEeeccccccccC-CcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHH
Confidence            99999999999999999999999999999999666544 56789999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCceEEeEEEEeC-CCC---CC-----CCCccHHHHHHHHHHHHhhHHHhhhCHHHHHHHHHHHHHHHHhchh
Q 044174          243 MVKLVDKNGHFSIKTVELTN-PTS---WL-----EGPIDIKAWTMHVRAAMEAMFSKHFRIEIIDEMFNRLIRRLFEFSD  313 (332)
Q Consensus       243 ~~~~ie~~G~F~I~~le~~~-p~~---~~-----~~~~~~~~~a~~iRa~~epll~~hfg~~i~delf~r~~~~v~~~l~  313 (332)
                      ++++|+++|+|+|+++|.++ +..   +.     +...+|+.+++++||++||+|++|||++|+|+||+||+++++++++
T Consensus       236 v~~~I~~~gsF~I~~le~~~~~~~~~~~~~~~~~d~~~~~~~~~~~iRA~~e~~l~~hfG~ei~D~LF~r~~~~v~~~~~  315 (334)
T PF03492_consen  236 VRAIIEEEGSFEIEKLELFEQPWWSVPDDESWKEDAKEYARNVANYIRAVFEPLLKAHFGEEIMDELFERYAKKVAEHLE  315 (334)
T ss_dssp             HHHHHHHHTSEEEEEEEEEEEETCCTCTTT-STTTHHCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCEEEEEEEEEeecccccchhhhcccchhhhHHHHHHhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999887 221   11     1124899999999999999999999999999999999999999998


Q ss_pred             hhhcCCcceEEEEEEEEeC
Q 044174          314 KVESGYKEKTQLFVILMRK  332 (332)
Q Consensus       314 ~~~~~~~~~~~~~~~L~r~  332 (332)
                      .......++++++++|+||
T Consensus       316 ~~~~~~~~~~~i~~~L~Rk  334 (334)
T PF03492_consen  316 KEKSRNMKFVNIVVSLTRK  334 (334)
T ss_dssp             HTHTT-BEEEEEEEEEEE-
T ss_pred             HhhccCCCcEEEEEEEeeC
Confidence            8433458999999999997

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=100.00  E-value=1.7e-92  Score=687.95  Aligned_cols=323  Identities=33%  Similarity=0.546  Sum_probs=291.3

Q ss_pred             ChhhhhhHHHHHHHHHHhhhhcccCCCC-CceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCC
Q 044174            1 RLAADAVKEKIVDAITRNLNVCELSSAS-NIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKT   79 (332)
Q Consensus         1 ~~~~~~~~~~l~~ai~~~~~~~~~~~~~-~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp   79 (332)
                      |+++..++|+|++||++++...    .+ ++++|||||||+|+||+.+++.||++|+++|.+.+  ..+|+|||||||||
T Consensus        38 ~~~~~~~k~~leeai~~~~~~~----~p~~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~--~~~pe~qv~~nDLP  111 (386)
T PLN02668         38 ALHARSMLHLLEETLDNVHLNS----SPEVPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAG--LDPPEFSAFFSDLP  111 (386)
T ss_pred             HHHHHHHHHHHHHHHHHhcccc----CCCcceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcC--CCCCcceEEecCCC
Confidence            4678899999999998885321    23 68999999999999999999999999999998743  35789999999999


Q ss_pred             CCchHHHHhcCccc----------------ccceeeecCCccccCCcCCCceeEEEecCccccccCCccccccCCCCCCC
Q 044174           80 SNDFNTLFTSLPQQ----------------REYYSAGVPGSFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWN  143 (332)
Q Consensus        80 ~NDFn~lf~~l~~~----------------~~~f~~~vpgSFy~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~n  143 (332)
                      +||||+||++||++                ++||++|||||||+||||++|+||+||++|||||||+|+.+.|+.++.||
T Consensus       112 ~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~N  191 (386)
T PLN02668        112 SNDFNTLFQLLPPLANYGGSMEECLAASGHRSYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYN  191 (386)
T ss_pred             CCCHHHHHhhchhhhhhhcchhhhccccCCCceEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCccccc
Confidence            99999999999853                24999999999999999999999999999999999999999999999999


Q ss_pred             CCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEecccCCCCCCCCcchhHHHHH-HHHHHHHHHHhhc
Q 044174          144 KGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIMPGIPYGMPYSHLTNGVMYDL-MATIFMELANEQL  222 (332)
Q Consensus       144 kg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~-l~~al~~mv~eGl  222 (332)
                      ||+||+++++++|.+||++||++||..||++||+||+|||+||++++||++.++..+...+.+|+. +.++|++||.||+
T Consensus       192 kg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGl  271 (386)
T PLN02668        192 KGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGL  271 (386)
T ss_pred             CCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEEecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCC
Confidence            999999999999999999999999999999999999999999999999998777666346777877 9999999999999


Q ss_pred             cchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEeCC----CCCC--CCCccHHHHHHHHHHHHhhHHHhhhCHHH
Q 044174          223 ITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELTNP----TSWL--EGPIDIKAWTMHVRAAMEAMFSKHFRIEI  296 (332)
Q Consensus       223 i~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~p----~~~~--~~~~~~~~~a~~iRa~~epll~~hfg~~i  296 (332)
                      |++||+|+||+|+|+||.+|++++|+++|+|+|+++|+++.    ..+.  +....++.+++++||++||++++|||++|
T Consensus       272 I~eek~dsFniP~Y~ps~eEv~~~Ie~~gsF~I~~le~~~~~~~~~~~~~~d~~~~g~~~a~~~RA~~E~ll~~HFG~~i  351 (386)
T PLN02668        272 VTSEKRDSFNIPVYAPSLQDFKEVVEANGSFAIDKLEVFKGGSPLVVNEPDDAAEVGRAMANSCRSVAGVLVDAHIGEEL  351 (386)
T ss_pred             CCHHHHhcccCcccCCCHHHHHHHHhhcCCEEeeeeEEeeccCcccccCcccHHHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence            99999999999999999999999999999999999999872    1111  11246788999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhchhhhhcCCcceEEEEEEEE
Q 044174          297 IDEMFNRLIRRLFEFSDKVESGYKEKTQLFVILM  330 (332)
Q Consensus       297 ~delf~r~~~~v~~~l~~~~~~~~~~~~~~~~L~  330 (332)
                      +|+||+||+++++++++... ++.++.+++++|.
T Consensus       352 ~D~lF~r~~~~v~~~~~~~~-~~~~~~~~~~sL~  384 (386)
T PLN02668        352 SNELFLRVERRATSHAKELL-EKLQFFHIVASLS  384 (386)
T ss_pred             HHHHHHHHHHHHHHHHHhhc-ccCceEEEEEEEe
Confidence            99999999999999888842 5778888888875

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.34  E-value=1.2e-10  Score=108.28  Aligned_cols=203  Identities=16%  Similarity=0.191  Sum_probs=123.3

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCcccc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHH  107 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~  107 (332)
                      ....+|+|+|||+|..+..+.+.                 .|..+|+-.|+- -+.....+..    .  +..+.+.+. 
T Consensus        28 ~~~~~vLDlGcG~G~~~~~l~~~-----------------~p~~~v~gvD~s-~~~~~~a~~~----~--~~~~~~d~~-   82 (255)
T PRK14103         28 ERARRVVDLGCGPGNLTRYLARR-----------------WPGAVIEALDSS-PEMVAAARER----G--VDARTGDVR-   82 (255)
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHH-----------------CCCCEEEEEECC-HHHHHHHHhc----C--CcEEEcChh-
Confidence            34579999999999877654321                 123455666642 2233333221    1  122334543 


Q ss_pred             CCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEE
Q 044174          108 RLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVI  187 (332)
Q Consensus       108 ~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl  187 (332)
                      .+.|++++|+++|+.++||+...                                      ..+|+.=++-|+|||++++
T Consensus        83 ~~~~~~~fD~v~~~~~l~~~~d~--------------------------------------~~~l~~~~~~LkpgG~l~~  124 (255)
T PRK14103         83 DWKPKPDTDVVVSNAALQWVPEH--------------------------------------ADLLVRWVDELAPGSWIAV  124 (255)
T ss_pred             hCCCCCCceEEEEehhhhhCCCH--------------------------------------HHHHHHHHHhCCCCcEEEE
Confidence            45678899999999999997531                                      1234444577889999999


Q ss_pred             EecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhh-hcccCcCcccCCHHHHHHHHHhCCceEEeEEEEeCCCCC
Q 044174          188 IMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAE-LDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELTNPTSW  266 (332)
Q Consensus       188 ~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~-~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~p~~~  266 (332)
                      ++.+... .+        .+..    +..+..++-....- -..+..+.++.+.+++..++++.| |++...+.......
T Consensus       125 ~~~~~~~-~~--------~~~~----~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~aG-f~v~~~~~~~~~~~  190 (255)
T PRK14103        125 QVPGNFD-AP--------SHAA----VRALARREPWAKLLRDIPFRVGAVVQTPAGYAELLTDAG-CKVDAWETTYVHQL  190 (255)
T ss_pred             EcCCCcC-Ch--------hHHH----HHHHhccCchhHHhcccccccCcCCCCHHHHHHHHHhCC-CeEEEEeeeeeeeC
Confidence            9866311 10        1111    11111111110000 001234556789999999999999 98876664322211


Q ss_pred             CCCCccHHHHHHHHHHH-HhhHHHhhhCHHHHHHHHHHHHHHHHhch
Q 044174          267 LEGPIDIKAWTMHVRAA-MEAMFSKHFRIEIIDEMFNRLIRRLFEFS  312 (332)
Q Consensus       267 ~~~~~~~~~~a~~iRa~-~epll~~hfg~~i~delf~r~~~~v~~~l  312 (332)
                       .+   .+.+..|+++. +.++++ .++++.++++.+.+.+.+++..
T Consensus       191 -~~---~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~l~~~~  232 (255)
T PRK14103        191 -TG---EDPVLDWITGTALRPVRE-RLSDDSWEQFRAELIPLLREAY  232 (255)
T ss_pred             -CC---chhhhhhhhccchhhhhh-hCCHHHHHHHHHHHHHHHHHHC
Confidence             11   25688898865 467777 6999999999999999998874

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.34  E-value=1.4e-10  Score=107.73  Aligned_cols=222  Identities=14%  Similarity=0.162  Sum_probs=129.9

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCcccc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHH  107 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~  107 (332)
                      .+..+|+|+|||+|..+..+.+.                 .|.-+|+..|.-. +.-...+...+  ++  .-+.+++. 
T Consensus        30 ~~~~~vLDiGcG~G~~~~~la~~-----------------~~~~~v~gvD~s~-~~i~~a~~~~~--~~--~~~~~d~~-   86 (258)
T PRK01683         30 ENPRYVVDLGCGPGNSTELLVER-----------------WPAARITGIDSSP-AMLAEARSRLP--DC--QFVEADIA-   86 (258)
T ss_pred             cCCCEEEEEcccCCHHHHHHHHH-----------------CCCCEEEEEECCH-HHHHHHHHhCC--CC--eEEECchh-
Confidence            34579999999999988766432                 1224566666432 22222222111  11  11223332 


Q ss_pred             CCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEE
Q 044174          108 RLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVI  187 (332)
Q Consensus       108 ~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl  187 (332)
                      .+.|++++|+++|+.++||+...                                      ..+|+.-.+-|+|||++++
T Consensus        87 ~~~~~~~fD~v~~~~~l~~~~d~--------------------------------------~~~l~~~~~~LkpgG~~~~  128 (258)
T PRK01683         87 SWQPPQALDLIFANASLQWLPDH--------------------------------------LELFPRLVSLLAPGGVLAV  128 (258)
T ss_pred             ccCCCCCccEEEEccChhhCCCH--------------------------------------HHHHHHHHHhcCCCcEEEE
Confidence            34577899999999999996431                                      1345556678999999999


Q ss_pred             EecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhc-ccCcCcccCCHHHHHHHHHhCCceEEeEEEEeCCCCC
Q 044174          188 IMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELD-SFNLPIYSASSEEMVKLVDKNGHFSIKTVELTNPTSW  266 (332)
Q Consensus       188 ~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d-~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~p~~~  266 (332)
                      ++.+....         ..+.    .+.++.....-. ..+. .-..+.++|+.+++...+++.| +.|+..+...+++.
T Consensus       129 ~~~~~~~~---------~~~~----~~~~~~~~~~w~-~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~v~~~~~~~~~~~  193 (258)
T PRK01683        129 QMPDNLDE---------PSHV----LMREVAENGPWE-QNLPDRGARRAPLPPPHAYYDALAPAA-CRVDIWHTTYYHPM  193 (258)
T ss_pred             ECCCCCCC---------HHHH----HHHHHHccCchH-HHhccccccCcCCCCHHHHHHHHHhCC-Cceeeeeeeeeeec
Confidence            86542110         1111    122222111000 0111 1123457799999999999999 67766554332222


Q ss_pred             CCCCccHHHHHHHHHHH-HhhHHHhhhCHHHHHHHHHHHHHHHHhchh-hhhcC--CcceEEEEEEEEe
Q 044174          267 LEGPIDIKAWTMHVRAA-MEAMFSKHFRIEIIDEMFNRLIRRLFEFSD-KVESG--YKEKTQLFVILMR  331 (332)
Q Consensus       267 ~~~~~~~~~~a~~iRa~-~epll~~hfg~~i~delf~r~~~~v~~~l~-~~~~~--~~~~~~~~~~L~r  331 (332)
                      . +   .+.+.+|+++. +.+++. +++++..+++.++|.+.+.+... .-. +  ...+.-++++-+|
T Consensus       194 ~-~---~~~~~~~~~~~~~~~~~~-~l~~~~~~~f~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~  256 (258)
T PRK01683        194 P-S---AQAIVEWVKGTGLRPFLD-PLTESEQAAFLAAYLARIAEAYPLQAD-GKVLLAFPRLFIVARR  256 (258)
T ss_pred             C-C---chhhhhhhhhccHHHHHh-hCCHHHHHHHHHHHHHHHHHHCCCCCC-CcEEcccceEEEEEEe
Confidence            1 1   25677788864 477775 79999999999999999988743 211 1  2344455666555

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.00  E-value=1e-08  Score=92.80  Aligned_cols=165  Identities=18%  Similarity=0.240  Sum_probs=104.8

Q ss_pred             CcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEE
Q 044174          109 LFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVII  188 (332)
Q Consensus       109 lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~  188 (332)
                      .-|+...|++|||++||||...|..+.                                  +.+    .+|.|||.+.+.
T Consensus        87 w~p~~~~dllfaNAvlqWlpdH~~ll~----------------------------------rL~----~~L~Pgg~LAVQ  128 (257)
T COG4106          87 WKPEQPTDLLFANAVLQWLPDHPELLP----------------------------------RLV----SQLAPGGVLAVQ  128 (257)
T ss_pred             cCCCCccchhhhhhhhhhccccHHHHH----------------------------------HHH----HhhCCCceEEEE
Confidence            458889999999999999887665432                                  111    477899999999


Q ss_pred             ecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCc-CcccCCHHHHHHHHHhCCceEEeEEEEeCCCCCC
Q 044174          189 MPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNL-PIYSASSEEMVKLVDKNGHFSIKTVELTNPTSWL  267 (332)
Q Consensus       189 ~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~-P~y~ps~~E~~~~ie~~G~F~I~~le~~~p~~~~  267 (332)
                      |++--++-  +           ..++++.++++-- +.++..+.. ----||+.-|-.++...+ -+|+--++.-.+...
T Consensus       129 mPdN~dep--s-----------H~~mr~~A~~~p~-~~~l~~~~~~r~~v~s~a~Yy~lLa~~~-~rvDiW~T~Y~h~l~  193 (257)
T COG4106         129 MPDNLDEP--S-----------HRLMRETADEAPF-AQELGGRGLTRAPLPSPAAYYELLAPLA-CRVDIWHTTYYHQLP  193 (257)
T ss_pred             CCCccCch--h-----------HHHHHHHHhcCch-hhhhCccccccCCCCCHHHHHHHhCccc-ceeeeeeeeccccCC
Confidence            98743221  1           2223333332211 111222110 112467888999998877 477766655433332


Q ss_pred             CCCccHHHHHHHHHH-HHhhHHHhhhCHHHHHHHHHHHHHHHHhchhh-hh-cCCcceEEEEEEEEe
Q 044174          268 EGPIDIKAWTMHVRA-AMEAMFSKHFRIEIIDEMFNRLIRRLFEFSDK-VE-SGYKEKTQLFVILMR  331 (332)
Q Consensus       268 ~~~~~~~~~a~~iRa-~~epll~~hfg~~i~delf~r~~~~v~~~l~~-~~-~~~~~~~~~~~~L~r  331 (332)
                          .++.+..|+++ .+.|.+.. ++++....+.++|..+++++... .. .--..|.-+||+-+|
T Consensus       194 ----~a~aIvdWvkgTgLrP~L~~-L~e~~~~~FL~~Y~~~l~~aYP~~~dGr~ll~FpRlFiVA~~  255 (257)
T COG4106         194 ----GADAIVDWVKGTGLRPYLDR-LDEEERQRFLDRYLALLAEAYPPRADGRVLLAFPRLFIVATR  255 (257)
T ss_pred             ----Cccchhhheeccccceeccc-cCHHHHHHHHHHHHHHHHHhCCCccCCcEEeecceEEEEEec
Confidence                22678999985 56688884 99999999999999999986443 11 012345567776665

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=98.99  E-value=3.1e-08  Score=93.05  Aligned_cols=196  Identities=10%  Similarity=0.063  Sum_probs=108.7

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCcccc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHH  107 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~  107 (332)
                      +...+|+|+|||+|..+..++..        +          ..+|+-.|+.. +.....+..... .--+..+.+++..
T Consensus        51 ~~~~~VLDiGcG~G~~a~~la~~--------~----------~~~v~giD~s~-~~~~~a~~~~~~-~~~i~~~~~D~~~  110 (263)
T PTZ00098         51 NENSKVLDIGSGLGGGCKYINEK--------Y----------GAHVHGVDICE-KMVNIAKLRNSD-KNKIEFEANDILK  110 (263)
T ss_pred             CCCCEEEEEcCCCChhhHHHHhh--------c----------CCEEEEEECCH-HHHHHHHHHcCc-CCceEEEECCccc
Confidence            44579999999999988766421        0          13455555432 222222221111 1123335567777


Q ss_pred             CCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEE
Q 044174          108 RLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVI  187 (332)
Q Consensus       108 ~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl  187 (332)
                      ..+|++++|+++|+.++|+++.                                    .|...+|+.-++-|+|||++++
T Consensus       111 ~~~~~~~FD~V~s~~~l~h~~~------------------------------------~d~~~~l~~i~r~LkPGG~lvi  154 (263)
T PTZ00098        111 KDFPENTFDMIYSRDAILHLSY------------------------------------ADKKKLFEKCYKWLKPNGILLI  154 (263)
T ss_pred             CCCCCCCeEEEEEhhhHHhCCH------------------------------------HHHHHHHHHHHHHcCCCcEEEE
Confidence            7789999999999888765431                                    1344567777788999999999


Q ss_pred             EecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEeCCCCCC
Q 044174          188 IMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELTNPTSWL  267 (332)
Q Consensus       188 ~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~p~~~~  267 (332)
                      +-....+...         +   ...+......          .  .+..++.++|.+++++.| |++...+-..++.. 
T Consensus       155 ~d~~~~~~~~---------~---~~~~~~~~~~----------~--~~~~~~~~~~~~~l~~aG-F~~v~~~d~~~~~~-  208 (263)
T PTZ00098        155 TDYCADKIEN---------W---DEEFKAYIKK----------R--KYTLIPIQEYGDLIKSCN-FQNVVAKDISDYWL-  208 (263)
T ss_pred             EEeccccccC---------c---HHHHHHHHHh----------c--CCCCCCHHHHHHHHHHCC-CCeeeEEeCcHHHH-
Confidence            8665443211         0   1111111110          0  123579999999999999 98766653321100 


Q ss_pred             CCCccHHHHHHHHHHHHhhHHHhhhCHHHHHHHHHHHHHHHH
Q 044174          268 EGPIDIKAWTMHVRAAMEAMFSKHFRIEIIDEMFNRLIRRLF  309 (332)
Q Consensus       268 ~~~~~~~~~a~~iRa~~epll~~hfg~~i~delf~r~~~~v~  309 (332)
                        ... ..+..-+++--+-+. +.+|++..+.+-.-+...+.
T Consensus       209 --~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  246 (263)
T PTZ00098        209 --ELL-QVELKKLEEKKEEFL-KLYSEKEYNSLKDGWTRKIK  246 (263)
T ss_pred             --HHH-HHHHHHHHHhHHHHH-HhcCHHHHHHHHHHHHHHHH
Confidence              000 111122222222333 35777766666555555443

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=98.96  E-value=2.7e-09  Score=103.13  Aligned_cols=154  Identities=14%  Similarity=0.115  Sum_probs=96.0

Q ss_pred             ceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccc--cceeeecCCcccc
Q 044174           30 IIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQR--EYYSAGVPGSFHH  107 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~--~~f~~~vpgSFy~  107 (332)
                      .-+|+|+|||+|..++.++..            +     +. +|+--| |+-.+...++......  ..-+.-+++++..
T Consensus       123 g~~VLDIGCG~G~~~~~la~~------------g-----~~-~V~GiD-~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~  183 (322)
T PRK15068        123 GRTVLDVGCGNGYHMWRMLGA------------G-----AK-LVVGID-PSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQ  183 (322)
T ss_pred             CCEEEEeccCCcHHHHHHHHc------------C-----CC-EEEEEc-CCHHHHHHHHHHHHhcCCCCCeEEEeCCHHH
Confidence            368999999999998765331            1     11 366667 5555554443322110  1112335556655


Q ss_pred             CCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEE
Q 044174          108 RLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVI  187 (332)
Q Consensus       108 ~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl  187 (332)
                      -.+ ++++|+++|..++||+..                                      ...+|+.-++.|+|||++++
T Consensus       184 lp~-~~~FD~V~s~~vl~H~~d--------------------------------------p~~~L~~l~~~LkpGG~lvl  224 (322)
T PRK15068        184 LPA-LKAFDTVFSMGVLYHRRS--------------------------------------PLDHLKQLKDQLVPGGELVL  224 (322)
T ss_pred             CCC-cCCcCEEEECChhhccCC--------------------------------------HHHHHHHHHHhcCCCcEEEE
Confidence            444 788999999999998432                                      22356667788999999999


Q ss_pred             EecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEeCCC
Q 044174          188 IMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELTNPT  264 (332)
Q Consensus       188 ~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~p~  264 (332)
                      .....+....     ..                 +...+....+...++.||.+++...+++.| |++.++....++
T Consensus       225 ~~~~i~~~~~-----~~-----------------l~p~~~y~~~~~~~~lps~~~l~~~L~~aG-F~~i~~~~~~~t  278 (322)
T PRK15068        225 ETLVIDGDEN-----TV-----------------LVPGDRYAKMRNVYFIPSVPALKNWLERAG-FKDVRIVDVSVT  278 (322)
T ss_pred             EEEEecCCCc-----cc-----------------cCchhHHhcCccceeCCCHHHHHHHHHHcC-CceEEEEeCCCC
Confidence            8654432211     00                 011111223444567899999999999999 998887765554

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=98.91  E-value=2.3e-08  Score=90.53  Aligned_cols=189  Identities=17%  Similarity=0.206  Sum_probs=114.3

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCcccc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHH  107 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~  107 (332)
                      ..+.+|+|+|||+|..+..+.+.                 .|..++...|......+..-+.+++  +  +..+-+++..
T Consensus        33 ~~~~~vLDlG~G~G~~~~~l~~~-----------------~~~~~~~~~D~~~~~~~~~~~~~~~--~--~~~~~~d~~~   91 (240)
T TIGR02072        33 FIPASVLDIGCGTGYLTRALLKR-----------------FPQAEFIALDISAGMLAQAKTKLSE--N--VQFICGDAEK   91 (240)
T ss_pred             CCCCeEEEECCCccHHHHHHHHh-----------------CCCCcEEEEeChHHHHHHHHHhcCC--C--CeEEecchhh
Confidence            34578999999999987665432                 1234567777654444333333332  1  2224466677


Q ss_pred             CCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEE
Q 044174          108 RLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVI  187 (332)
Q Consensus       108 ~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl  187 (332)
                      ..+|++++|+++|+.++||+..                                      ...+|+...+-|+|||.+++
T Consensus        92 ~~~~~~~fD~vi~~~~l~~~~~--------------------------------------~~~~l~~~~~~L~~~G~l~~  133 (240)
T TIGR02072        92 LPLEDSSFDLIVSNLALQWCDD--------------------------------------LSQALSELARVLKPGGLLAF  133 (240)
T ss_pred             CCCCCCceeEEEEhhhhhhccC--------------------------------------HHHHHHHHHHHcCCCcEEEE
Confidence            7789999999999999999633                                      22466777788999999999


Q ss_pred             EecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEeC-CCCC
Q 044174          188 IMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELTN-PTSW  266 (332)
Q Consensus       188 ~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~-p~~~  266 (332)
                      ...+.+.           + ..+..++..                ....+++.+++..++.+.  |....++... +...
T Consensus       134 ~~~~~~~-----------~-~~~~~~~~~----------------~~~~~~~~~~~~~~l~~~--f~~~~~~~~~~~~~~  183 (240)
T TIGR02072       134 STFGPGT-----------L-HELRQSFGQ----------------HGLRYLSLDELKALLKNS--FELLTLEEELITLSF  183 (240)
T ss_pred             EeCCccC-----------H-HHHHHHHHH----------------hccCCCCHHHHHHHHHHh--cCCcEEEEEEEEEeC
Confidence            8765432           1 112222211                123457889999998765  6655544332 1111


Q ss_pred             CCCCccHHHHHHHHHHHHhhHHH-hhhCHHHHHHHHHHHHHHHH
Q 044174          267 LEGPIDIKAWTMHVRAAMEAMFS-KHFRIEIIDEMFNRLIRRLF  309 (332)
Q Consensus       267 ~~~~~~~~~~a~~iRa~~epll~-~hfg~~i~delf~r~~~~v~  309 (332)
                      .    +...+..++|........ ...+.+...++.+.|.+...
T Consensus       184 ~----~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (240)
T TIGR02072       184 D----DPLDVLRHLKKTGANGLSSGRTSRKQLKAFLERYEQEFQ  223 (240)
T ss_pred             C----CHHHHHHHHHHhccCcCCCCCCCHHHHHHHHHHHHHhhc
Confidence            1    125567777765443322 23566666677666665553

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.86  E-value=2.4e-07  Score=93.72  Aligned_cols=191  Identities=12%  Similarity=0.132  Sum_probs=112.4

Q ss_pred             CceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCccccC
Q 044174           29 NIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHR  108 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~~  108 (332)
                      ...+|+|+|||+|..++.+.+..                  ..+|+--|+. .+.-...+........-+.-+-+++...
T Consensus       266 ~~~~vLDiGcG~G~~~~~la~~~------------------~~~v~gvDiS-~~~l~~A~~~~~~~~~~v~~~~~d~~~~  326 (475)
T PLN02336        266 PGQKVLDVGCGIGGGDFYMAENF------------------DVHVVGIDLS-VNMISFALERAIGRKCSVEFEVADCTKK  326 (475)
T ss_pred             CCCEEEEEeccCCHHHHHHHHhc------------------CCEEEEEECC-HHHHHHHHHHhhcCCCceEEEEcCcccC
Confidence            35699999999998776654311                  1245555553 2222222221111112233445677777


Q ss_pred             CcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEE
Q 044174          109 LFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVII  188 (332)
Q Consensus       109 lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~  188 (332)
                      .+|++++|+++|..++||+...                                      ..+|+.=++-|+|||++++.
T Consensus       327 ~~~~~~fD~I~s~~~l~h~~d~--------------------------------------~~~l~~~~r~LkpgG~l~i~  368 (475)
T PLN02336        327 TYPDNSFDVIYSRDTILHIQDK--------------------------------------PALFRSFFKWLKPGGKVLIS  368 (475)
T ss_pred             CCCCCCEEEEEECCcccccCCH--------------------------------------HHHHHHHHHHcCCCeEEEEE
Confidence            7899999999999999997431                                      13455556778899999999


Q ss_pred             ecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEeCCCCCCC
Q 044174          189 MPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELTNPTSWLE  268 (332)
Q Consensus       189 ~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~p~~~~~  268 (332)
                      ...+....+.     .    .+...+.   .             .-+..++.+++.+++++.| |++..++.+.      
T Consensus       369 ~~~~~~~~~~-----~----~~~~~~~---~-------------~g~~~~~~~~~~~~l~~aG-F~~i~~~d~~------  416 (475)
T PLN02336        369 DYCRSPGTPS-----P----EFAEYIK---Q-------------RGYDLHDVQAYGQMLKDAG-FDDVIAEDRT------  416 (475)
T ss_pred             EeccCCCCCc-----H----HHHHHHH---h-------------cCCCCCCHHHHHHHHHHCC-Ceeeeeecch------
Confidence            8776543211     0    1111111   0             1134678999999999999 9987665331      


Q ss_pred             CCccHHHHHHHHHHH---HhhHHHhhhCHHHHHHHHHHHHHHHHh
Q 044174          269 GPIDIKAWTMHVRAA---MEAMFSKHFRIEIIDEMFNRLIRRLFE  310 (332)
Q Consensus       269 ~~~~~~~~a~~iRa~---~epll~~hfg~~i~delf~r~~~~v~~  310 (332)
                       +.+...++.|...+   .+.++ +.+|++..+.+...+.+.+..
T Consensus       417 -~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~  459 (475)
T PLN02336        417 -DQFLQVLQRELDAVEKEKDEFI-SDFSEEDYNDIVGGWKAKLVR  459 (475)
T ss_pred             -HHHHHHHHHHHHHHHhCHHHHH-HhcCHHHHHHHHHhHHHHHhh
Confidence             11223334443333   22233 357777777776666666554

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=98.86  E-value=1.3e-08  Score=92.77  Aligned_cols=171  Identities=15%  Similarity=0.121  Sum_probs=94.1

Q ss_pred             CceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcC-cccccceeeecCCcccc
Q 044174           29 NIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSL-PQQREYYSAGVPGSFHH  107 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l-~~~~~~f~~~vpgSFy~  107 (332)
                      ..-+|+|+|||+|..+..+.+.        +        .|..+|+-.|+-. ......+.. .....--+.-+.+....
T Consensus        45 ~~~~vLDiGcG~G~~~~~la~~--------~--------~~~~~v~gvD~s~-~~~~~a~~~~~~~~~~~v~~~~~d~~~  107 (231)
T TIGR02752        45 AGTSALDVCCGTADWSIALAEA--------V--------GPEGHVIGLDFSE-NMLSVGRQKVKDAGLHNVELVHGNAME  107 (231)
T ss_pred             CCCEEEEeCCCcCHHHHHHHHH--------h--------CCCCEEEEEECCH-HHHHHHHHHHHhcCCCceEEEEechhc
Confidence            3579999999999988765442        1        1234566666532 222222211 11110113334555555


Q ss_pred             CCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEE
Q 044174          108 RLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVI  187 (332)
Q Consensus       108 ~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl  187 (332)
                      -.+|++++|+|+++.++||++..                                      ..+|+.-.+-|+|||++++
T Consensus       108 ~~~~~~~fD~V~~~~~l~~~~~~--------------------------------------~~~l~~~~~~Lk~gG~l~~  149 (231)
T TIGR02752       108 LPFDDNSFDYVTIGFGLRNVPDY--------------------------------------MQVLREMYRVVKPGGKVVC  149 (231)
T ss_pred             CCCCCCCccEEEEecccccCCCH--------------------------------------HHHHHHHHHHcCcCeEEEE
Confidence            56788999999999999996431                                      1244555567789999998


Q ss_pred             EecccCCCCCCCCcchhHHHHH----HHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEeC
Q 044174          188 IMPGIPYGMPYSHLTNGVMYDL----MATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELTN  262 (332)
Q Consensus       188 ~~~gr~~~~~~~~~~~~~~~~~----l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~  262 (332)
                      .-.+.++..     .....+..    +-..+..+...+......+.  ..-..+|+.+|+++.+++.| |++.+++.+.
T Consensus       150 ~~~~~~~~~-----~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~aG-f~~~~~~~~~  220 (231)
T TIGR02752       150 LETSQPTIP-----GFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQ--ESTRDFPGMDELAEMFQEAG-FKDVEVKSYT  220 (231)
T ss_pred             EECCCCCCh-----HHHHHHHHHHcChhHHhhHHhcCCHHHHHHHH--HHHHHcCCHHHHHHHHHHcC-CCeeEEEEcc
Confidence            765544321     01111100    01111111111110000000  11236789999999999999 9988777653

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>TIGR00740 methyltransferase, putative

Probab=98.86  E-value=3.8e-08  Score=90.66  Aligned_cols=162  Identities=16%  Similarity=0.214  Sum_probs=95.4

Q ss_pred             CceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcC-cccc-cceeeecCCccc
Q 044174           29 NIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSL-PQQR-EYYSAGVPGSFH  106 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l-~~~~-~~f~~~vpgSFy  106 (332)
                      ...+|+|+|||+|..+..+.+.+               ..|..+++--|+-. +.-...+.. .... ..-+.-+-|++.
T Consensus        53 ~~~~iLDlGcG~G~~~~~l~~~~---------------~~p~~~v~gvD~s~-~ml~~a~~~~~~~~~~~~v~~~~~d~~  116 (239)
T TIGR00740        53 PDSNVYDLGCSRGAATLSARRNI---------------NQPNVKIIGIDNSQ-PMVERCRQHIAAYHSEIPVEILCNDIR  116 (239)
T ss_pred             CCCEEEEecCCCCHHHHHHHHhc---------------CCCCCeEEEEeCCH-HHHHHHHHHHHhcCCCCCeEEEECChh
Confidence            44689999999999887764421               12345666666522 333333321 1110 112333556776


Q ss_pred             cCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEE
Q 044174          107 HRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMV  186 (332)
Q Consensus       107 ~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mv  186 (332)
                      .-.+|  +.|+++|++++||++.                                    .|...+|+.-.+-|+|||+++
T Consensus       117 ~~~~~--~~d~v~~~~~l~~~~~------------------------------------~~~~~~l~~i~~~LkpgG~l~  158 (239)
T TIGR00740       117 HVEIK--NASMVILNFTLQFLPP------------------------------------EDRIALLTKIYEGLNPNGVLV  158 (239)
T ss_pred             hCCCC--CCCEEeeecchhhCCH------------------------------------HHHHHHHHHHHHhcCCCeEEE
Confidence            65454  4789999999999743                                    123356777778999999999


Q ss_pred             EEecccCCCCCCCCcchhHHHHHHHHHHHHHHH-hhccchhhh----cccCcCcccCCHHHHHHHHHhCCceE
Q 044174          187 IIMPGIPYGMPYSHLTNGVMYDLMATIFMELAN-EQLITEAEL----DSFNLPIYSASSEEMVKLVDKNGHFS  254 (332)
Q Consensus       187 l~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~-eGli~~e~~----d~fn~P~y~ps~~E~~~~ie~~G~F~  254 (332)
                      +.-..+.+...        ..+.+...+..... .|. +.+++    +.+.-.....|++|+++.+++.| |.
T Consensus       159 i~d~~~~~~~~--------~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aG-F~  221 (239)
T TIGR00740       159 LSEKFRFEDTK--------INHLLIDLHHQFKRANGY-SELEISQKRTALENVMRTDSIETHKARLKNVG-FS  221 (239)
T ss_pred             EeecccCCCHh--------HHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHhccCCCCCHHHHHHHHHHcC-Cc
Confidence            98654433221        12233333333333 343 33322    23333445579999999999999 76

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=98.80  E-value=3.5e-07  Score=84.71  Aligned_cols=141  Identities=11%  Similarity=0.136  Sum_probs=84.7

Q ss_pred             CceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCccccC
Q 044174           29 NIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHR  108 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~~  108 (332)
                      ..-+|+|+|||+|..+..+..        .           ..+|+..|+-. +.....+..... ..|   +-+++..-
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~--------~-----------~~~v~~~D~s~-~~l~~a~~~~~~-~~~---~~~d~~~~   97 (251)
T PRK10258         42 KFTHVLDAGCGPGWMSRYWRE--------R-----------GSQVTALDLSP-PMLAQARQKDAA-DHY---LAGDIESL   97 (251)
T ss_pred             CCCeEEEeeCCCCHHHHHHHH--------c-----------CCeEEEEECCH-HHHHHHHhhCCC-CCE---EEcCcccC
Confidence            356899999999987765421        1           12455555422 111111111110 112   34455555


Q ss_pred             CcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEE
Q 044174          109 LFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVII  188 (332)
Q Consensus       109 lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~  188 (332)
                      .+|++++|+++|+.++||+...+                                      .+|+.-.+-|+|||.+++.
T Consensus        98 ~~~~~~fD~V~s~~~l~~~~d~~--------------------------------------~~l~~~~~~Lk~gG~l~~~  139 (251)
T PRK10258         98 PLATATFDLAWSNLAVQWCGNLS--------------------------------------TALRELYRVVRPGGVVAFT  139 (251)
T ss_pred             cCCCCcEEEEEECchhhhcCCHH--------------------------------------HHHHHHHHHcCCCeEEEEE
Confidence            68899999999999999955421                                      2444555778899999999


Q ss_pred             ecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEE
Q 044174          189 MPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSI  255 (332)
Q Consensus       189 ~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I  255 (332)
                      ..+.++            +.-+.++|..+-  +         -....-+++.+|+...+...| +.+
T Consensus       140 ~~~~~~------------~~el~~~~~~~~--~---------~~~~~~~~~~~~l~~~l~~~~-~~~  182 (251)
T PRK10258        140 TLVQGS------------LPELHQAWQAVD--E---------RPHANRFLPPDAIEQALNGWR-YQH  182 (251)
T ss_pred             eCCCCc------------hHHHHHHHHHhc--c---------CCccccCCCHHHHHHHHHhCC-cee
Confidence            887653            123445555331  0         111234678999999998777 554

>PRK08317 hypothetical protein; Provisional

Probab=98.77  E-value=1.9e-06  Score=77.72  Aligned_cols=206  Identities=18%  Similarity=0.124  Sum_probs=105.5

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCcccc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHH  107 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~  107 (332)
                      ....+|+|+|||+|..+..+.+..                .|.-+++--|+-.+-... .+........-+..+.+.+..
T Consensus        18 ~~~~~vLdiG~G~G~~~~~~a~~~----------------~~~~~v~~~d~~~~~~~~-a~~~~~~~~~~~~~~~~d~~~   80 (241)
T PRK08317         18 QPGDRVLDVGCGPGNDARELARRV----------------GPEGRVVGIDRSEAMLAL-AKERAAGLGPNVEFVRGDADG   80 (241)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHhc----------------CCCcEEEEEeCCHHHHHH-HHHHhhCCCCceEEEeccccc
Confidence            445799999999999887665432                012344444543221111 111100000011122234444


Q ss_pred             CCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEE
Q 044174          108 RLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVI  187 (332)
Q Consensus       108 ~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl  187 (332)
                      ..++++++|++++..++||+..                                      +..+|+.-.+-|+|||.+++
T Consensus        81 ~~~~~~~~D~v~~~~~~~~~~~--------------------------------------~~~~l~~~~~~L~~gG~l~~  122 (241)
T PRK08317         81 LPFPDGSFDAVRSDRVLQHLED--------------------------------------PARALAEIARVLRPGGRVVV  122 (241)
T ss_pred             CCCCCCCceEEEEechhhccCC--------------------------------------HHHHHHHHHHHhcCCcEEEE
Confidence            4578889999999999999654                                      12345556678889999999


Q ss_pred             EecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEeC-CCCC
Q 044174          188 IMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELTN-PTSW  266 (332)
Q Consensus       188 ~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~-p~~~  266 (332)
                      ....-+......  ...   ..+...+.....          .+.-|   .+..++...+++.| |.+..++.+. +...
T Consensus       123 ~~~~~~~~~~~~--~~~---~~~~~~~~~~~~----------~~~~~---~~~~~~~~~l~~aG-f~~~~~~~~~~~~~~  183 (241)
T PRK08317        123 LDTDWDTLVWHS--GDR---ALMRKILNFWSD----------HFADP---WLGRRLPGLFREAG-LTDIEVEPYTLIETD  183 (241)
T ss_pred             EecCCCceeecC--CCh---HHHHHHHHHHHh----------cCCCC---cHHHHHHHHHHHcC-CCceeEEEEEEeccC
Confidence            865322110000  011   122222221111          11112   23468999999999 9888777664 2111


Q ss_pred             CCCCccHHHHHHHHHHHHhhHHHhhhCHHHHHHHHHHHHHHHHh
Q 044174          267 LEGPIDIKAWTMHVRAAMEAMFSKHFRIEIIDEMFNRLIRRLFE  310 (332)
Q Consensus       267 ~~~~~~~~~~a~~iRa~~epll~~hfg~~i~delf~r~~~~v~~  310 (332)
                      .........+..+++.+.+   ..-..++.++++++.+++....
T Consensus       184 ~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~  224 (241)
T PRK08317        184 LKEADKGFGLIRAARRAVE---AGGISADEADAWLADLAQLARA  224 (241)
T ss_pred             cchhhHHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHHHhc
Confidence            1111111223333333322   1224556677777777765543

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.74  E-value=1.6e-07  Score=87.44  Aligned_cols=163  Identities=13%  Similarity=0.168  Sum_probs=88.1

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccc--cceeeecCCcc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQR--EYYSAGVPGSF  105 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~--~~f~~~vpgSF  105 (332)
                      +.+.+|+|+|||+|..++.+++.            +       .+|+..|.-. +.-...+......  ..-+.-+-+++
T Consensus        43 ~~~~~vLDiGcG~G~~a~~la~~------------g-------~~v~~vD~s~-~~l~~a~~~~~~~g~~~~v~~~~~d~  102 (255)
T PRK11036         43 PRPLRVLDAGGGEGQTAIKLAEL------------G-------HQVILCDLSA-EMIQRAKQAAEAKGVSDNMQFIHCAA  102 (255)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHc------------C-------CEEEEEECCH-HHHHHHHHHHHhcCCccceEEEEcCH
Confidence            34579999999999988777531            0       1233334211 2222222111100  00111222333


Q ss_pred             ccC-CcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCe
Q 044174          106 HHR-LFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGM  184 (332)
Q Consensus       106 y~~-lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~  184 (332)
                      .+- .++++++|++++..++||+...+                                      .+|+.=++-|+|||+
T Consensus       103 ~~l~~~~~~~fD~V~~~~vl~~~~~~~--------------------------------------~~l~~~~~~LkpgG~  144 (255)
T PRK11036        103 QDIAQHLETPVDLILFHAVLEWVADPK--------------------------------------SVLQTLWSVLRPGGA  144 (255)
T ss_pred             HHHhhhcCCCCCEEEehhHHHhhCCHH--------------------------------------HHHHHHHHHcCCCeE
Confidence            322 25678999999999999986421                                      133344467889999


Q ss_pred             EEEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEe
Q 044174          185 MVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELT  261 (332)
Q Consensus       185 mvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~  261 (332)
                      +++.+.....         ..+-..+..-+. .+..|+...+..  .-.|-+..+++++.+.+++.| |++....-+
T Consensus       145 l~i~~~n~~~---------~~~~~~~~~~~~-~~~~~~~~~~~~--~~~p~~~~~~~~l~~~l~~aG-f~~~~~~gi  208 (255)
T PRK11036        145 LSLMFYNANG---------LLMHNMVAGNFD-YVQAGMPKRKKR--TLSPDYPLDPEQVYQWLEEAG-WQIMGKTGV  208 (255)
T ss_pred             EEEEEECccH---------HHHHHHHccChH-HHHhcCcccccc--CCCCCCCCCHHHHHHHHHHCC-CeEeeeeeE
Confidence            9988755321         001111111111 123333221111  113566778999999999999 998776633

>PLN02244 tocopherol O-methyltransferase

Probab=98.74  E-value=4.4e-07  Score=88.37  Aligned_cols=161  Identities=14%  Similarity=0.114  Sum_probs=87.8

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccc--cceeeecCCcc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQR--EYYSAGVPGSF  105 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~--~~f~~~vpgSF  105 (332)
                      ...-+|+|+|||+|..+..+.+..                  ..+|.--|+-.+ .....+.+....  .--+.-+-+.+
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~------------------g~~v~gvD~s~~-~i~~a~~~~~~~g~~~~v~~~~~D~  177 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKY------------------GANVKGITLSPV-QAARANALAAAQGLSDKVSFQVADA  177 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhc------------------CCEEEEEECCHH-HHHHHHHHHHhcCCCCceEEEEcCc
Confidence            345789999999999998876531                  012222222111 111111111000  01122234555


Q ss_pred             ccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeE
Q 044174          106 HHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMM  185 (332)
Q Consensus       106 y~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~m  185 (332)
                      .+..||++++|+|+|..++|++..                                      ...+|+.=.+-|+|||++
T Consensus       178 ~~~~~~~~~FD~V~s~~~~~h~~d--------------------------------------~~~~l~e~~rvLkpGG~l  219 (340)
T PLN02244        178 LNQPFEDGQFDLVWSMESGEHMPD--------------------------------------KRKFVQELARVAAPGGRI  219 (340)
T ss_pred             ccCCCCCCCccEEEECCchhccCC--------------------------------------HHHHHHHHHHHcCCCcEE
Confidence            666689999999999999988533                                      113455556778899999


Q ss_pred             EEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEe
Q 044174          186 VIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELT  261 (332)
Q Consensus       186 vl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~  261 (332)
                      ++......+..+... ...   ..-...+..+.          ..+.+| .+.+.+|+.+++++.| |...+.+.+
T Consensus       220 vi~~~~~~~~~~~~~-~l~---~~~~~~~~~i~----------~~~~~p-~~~s~~~~~~~l~~aG-f~~v~~~d~  279 (340)
T PLN02244        220 IIVTWCHRDLEPGET-SLK---PDEQKLLDKIC----------AAYYLP-AWCSTSDYVKLAESLG-LQDIKTEDW  279 (340)
T ss_pred             EEEEecccccccccc-cCC---HHHHHHHHHHH----------hhccCC-CCCCHHHHHHHHHHCC-CCeeEeeeC
Confidence            998655433221110 000   01111222211          112234 2348999999999999 887665543

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=98.73  E-value=9.9e-08  Score=88.39  Aligned_cols=167  Identities=14%  Similarity=0.164  Sum_probs=99.3

Q ss_pred             CceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCccccC
Q 044174           29 NIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHR  108 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~~  108 (332)
                      +..+|+|+|||+|--|+.+.+.+-                 +-+|..-|.-.+=.+.-=+.+.+.....+.-|-|...+-
T Consensus        51 ~g~~vLDva~GTGd~a~~~~k~~g-----------------~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~L  113 (238)
T COG2226          51 PGDKVLDVACGTGDMALLLAKSVG-----------------TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENL  113 (238)
T ss_pred             CCCEEEEecCCccHHHHHHHHhcC-----------------CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhC
Confidence            579999999999999988755321                 223333333222222211112221112256678888999


Q ss_pred             CcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEE
Q 044174          109 LFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVII  188 (332)
Q Consensus       109 lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~  188 (332)
                      .||++|+|++.+++.||++.+.+..+                                      +--++-|||||++++.
T Consensus       114 Pf~D~sFD~vt~~fglrnv~d~~~aL--------------------------------------~E~~RVlKpgG~~~vl  155 (238)
T COG2226         114 PFPDNSFDAVTISFGLRNVTDIDKAL--------------------------------------KEMYRVLKPGGRLLVL  155 (238)
T ss_pred             CCCCCccCEEEeeehhhcCCCHHHHH--------------------------------------HHHHHhhcCCeEEEEE
Confidence            99999999999999999988755433                                      3334566799999998


Q ss_pred             ecccCCCCCCCCcchhHHHHHHHH-HHHHHHHhhccc--hhhhc-ccCcCcccCCHHHHHHHHHhCCceEEeE
Q 044174          189 MPGIPYGMPYSHLTNGVMYDLMAT-IFMELANEQLIT--EAELD-SFNLPIYSASSEEMVKLVDKNGHFSIKT  257 (332)
Q Consensus       189 ~~gr~~~~~~~~~~~~~~~~~l~~-al~~mv~eGli~--~e~~d-~fn~P~y~ps~~E~~~~ie~~G~F~I~~  257 (332)
                      =.++++......    ........ ++--+.  .+++  .+... -.....-+|+.+++.+.+++.| |+...
T Consensus       156 e~~~p~~~~~~~----~~~~~~~~~v~P~~g--~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~g-f~~i~  221 (238)
T COG2226         156 EFSKPDNPVLRK----AYILYYFKYVLPLIG--KLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAG-FEEVR  221 (238)
T ss_pred             EcCCCCchhhHH----HHHHHHHHhHhhhhc--eeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcC-ceEEe
Confidence            877765432111    01111112 221110  1111  11111 1234556899999999999999 87555

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=98.72  E-value=6.8e-08  Score=82.11  Aligned_cols=138  Identities=23%  Similarity=0.311  Sum_probs=83.4

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCccc-
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFH-  106 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy-  106 (332)
                      ....+|+|+|||.|.++..+..        .         .  .++...|.-...-..            ....+..|. 
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~~--------~---------~--~~~~g~D~~~~~~~~------------~~~~~~~~~~   69 (161)
T PF13489_consen   21 KPGKRVLDIGCGTGSFLRALAK--------R---------G--FEVTGVDISPQMIEK------------RNVVFDNFDA   69 (161)
T ss_dssp             TTTSEEEEESSTTSHHHHHHHH--------T---------T--SEEEEEESSHHHHHH------------TTSEEEEEEC
T ss_pred             CCCCEEEEEcCCCCHHHHHHHH--------h---------C--CEEEEEECCHHHHhh------------hhhhhhhhhh
Confidence            5568999999999987655421        1         1  144444432211111            001111221 


Q ss_pred             -cCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeE
Q 044174          107 -HRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMM  185 (332)
Q Consensus       107 -~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~m  185 (332)
                       ...+|++++|+|+|+.+|||+..                                      +..+|+.-.+-|+|||++
T Consensus        70 ~~~~~~~~~fD~i~~~~~l~~~~d--------------------------------------~~~~l~~l~~~LkpgG~l  111 (161)
T PF13489_consen   70 QDPPFPDGSFDLIICNDVLEHLPD--------------------------------------PEEFLKELSRLLKPGGYL  111 (161)
T ss_dssp             HTHHCHSSSEEEEEEESSGGGSSH--------------------------------------HHHHHHHHHHCEEEEEEE
T ss_pred             hhhhccccchhhHhhHHHHhhccc--------------------------------------HHHHHHHHHHhcCCCCEE
Confidence             34468899999999999999663                                      234667777889999999


Q ss_pred             EEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeE
Q 044174          186 VIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKT  257 (332)
Q Consensus       186 vl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~  257 (332)
                      ++....+..              .....+...   ......   .  --..+-+.++++.++++.| |+|.+
T Consensus       112 ~~~~~~~~~--------------~~~~~~~~~---~~~~~~---~--~~~~~~~~~~~~~ll~~~G-~~iv~  160 (161)
T PF13489_consen  112 VISDPNRDD--------------PSPRSFLKW---RYDRPY---G--GHVHFFSPDELRQLLEQAG-FEIVE  160 (161)
T ss_dssp             EEEEEBTTS--------------HHHHHHHHC---CGTCHH---T--TTTEEBBHHHHHHHHHHTT-EEEEE
T ss_pred             EEEEcCCcc--------------hhhhHHHhc---CCcCcc---C--ceeccCCHHHHHHHHHHCC-CEEEE
Confidence            999988643              011112111   111100   0  1125569999999999999 98753

...

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=98.71  E-value=5.5e-08  Score=91.28  Aligned_cols=110  Identities=16%  Similarity=0.145  Sum_probs=65.3

Q ss_pred             cCCccccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 044174          101 VPGSFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIV  180 (332)
Q Consensus       101 vpgSFy~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~  180 (332)
                      +-++...-.||++|+|++++++++||+..                                      ...+|+.-++-||
T Consensus       132 ~~~d~~~lp~~~~sfD~V~~~~~l~~~~d--------------------------------------~~~~l~ei~rvLk  173 (261)
T PLN02233        132 IEGDATDLPFDDCYFDAITMGYGLRNVVD--------------------------------------RLKAMQEMYRVLK  173 (261)
T ss_pred             EEcccccCCCCCCCEeEEEEecccccCCC--------------------------------------HHHHHHHHHHHcC
Confidence            34455555689999999999999999643                                      1235566667888


Q ss_pred             cCCeEEEEecccCCCCCCCCcchhHHHHHH-HHHHHHHHH-hhccchhhhcccC-cC---cccCCHHHHHHHHHhCCceE
Q 044174          181 SGGMMVIIMPGIPYGMPYSHLTNGVMYDLM-ATIFMELAN-EQLITEAELDSFN-LP---IYSASSEEMVKLVDKNGHFS  254 (332)
Q Consensus       181 pGG~mvl~~~gr~~~~~~~~~~~~~~~~~l-~~al~~mv~-eGli~~e~~d~fn-~P---~y~ps~~E~~~~ie~~G~F~  254 (332)
                      |||++++...++++...     ...+++.. ...+.-+.. -|.  .   +.+. ++   --+++.+|+.+++++.| |+
T Consensus       174 pGG~l~i~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~--~---~~y~~l~~s~~~f~s~~el~~ll~~aG-F~  242 (261)
T PLN02233        174 PGSRVSILDFNKSTQPF-----TTSMQEWMIDNVVVPVATGYGL--A---KEYEYLKSSINEYLTGEELEKLALEAG-FS  242 (261)
T ss_pred             cCcEEEEEECCCCCcHH-----HHHHHHHHHhhhhhHHHHHhCC--h---HHHHHHHHHHHhcCCHHHHHHHHHHCC-CC
Confidence            99999999877654321     11111111 111110100 011  0   1110 00   12789999999999999 88


Q ss_pred             EeEEE
Q 044174          255 IKTVE  259 (332)
Q Consensus       255 I~~le  259 (332)
                      +.+..
T Consensus       243 ~~~~~  247 (261)
T PLN02233        243 SAKHY  247 (261)
T ss_pred             EEEEE
Confidence            65543

>TIGR00452 methyltransferase, putative

Probab=98.70  E-value=2.6e-07  Score=89.14  Aligned_cols=164  Identities=13%  Similarity=0.105  Sum_probs=92.9

Q ss_pred             ceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCc----ccccceeeecCCcc
Q 044174           30 IIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLP----QQREYYSAGVPGSF  105 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~----~~~~~f~~~vpgSF  105 (332)
                      .-+|+|+|||+|..++.++..            +     +. .|+--| |+-.+-..|+...    ....+  .-.++++
T Consensus       122 g~~VLDvGCG~G~~~~~~~~~------------g-----~~-~v~GiD-pS~~ml~q~~~~~~~~~~~~~v--~~~~~~i  180 (314)
T TIGR00452       122 GRTILDVGCGSGYHMWRMLGH------------G-----AK-SLVGID-PTVLFLCQFEAVRKLLDNDKRA--ILEPLGI  180 (314)
T ss_pred             CCEEEEeccCCcHHHHHHHHc------------C-----CC-EEEEEc-CCHHHHHHHHHHHHHhccCCCe--EEEECCH
Confidence            469999999999987655321            1     11 233333 2223333332211    11111  1133333


Q ss_pred             ccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeE
Q 044174          106 HHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMM  185 (332)
Q Consensus       106 y~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~m  185 (332)
                      -+ +-+.+++|.|+|+.+|||+.. |                                     ..+|+.=++-|+|||+|
T Consensus       181 e~-lp~~~~FD~V~s~gvL~H~~d-p-------------------------------------~~~L~el~r~LkpGG~L  221 (314)
T TIGR00452       181 EQ-LHELYAFDTVFSMGVLYHRKS-P-------------------------------------LEHLKQLKHQLVIKGEL  221 (314)
T ss_pred             HH-CCCCCCcCEEEEcchhhccCC-H-------------------------------------HHHHHHHHHhcCCCCEE
Confidence            33 223468999999999999532 1                                     12566666889999999


Q ss_pred             EEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEeCCCC
Q 044174          186 VIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELTNPTS  265 (332)
Q Consensus       186 vl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~p~~  265 (332)
                      |++....+....      .        ++        ...+....+...++.||.+++...+++.| |+..++.....+.
T Consensus       222 vletl~i~g~~~------~--------~l--------~p~~ry~k~~nv~flpS~~~L~~~L~~aG-F~~V~i~~~~~tt  278 (314)
T TIGR00452       222 VLETLVIDGDLN------T--------VL--------VPKDRYAKMKNVYFIPSVSALKNWLEKVG-FENFRILDVLKTT  278 (314)
T ss_pred             EEEEEEecCccc------c--------cc--------CchHHHHhccccccCCCHHHHHHHHHHCC-CeEEEEEeccCCC
Confidence            998654321110      0        00        01111223445678899999999999999 9877766544322


Q ss_pred             CCCCCccHHHHHHHHH
Q 044174          266 WLEGPIDIKAWTMHVR  281 (332)
Q Consensus       266 ~~~~~~~~~~~a~~iR  281 (332)
                      ..     .+..+.|++
T Consensus       279 ~~-----eqr~t~w~~  289 (314)
T TIGR00452       279 PE-----EQRKTDWIL  289 (314)
T ss_pred             HH-----Hhhhhhhhh
Confidence            11     155667765

Known examples to date are restricted to the proteobacteria.

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=98.68  E-value=3.9e-07  Score=84.64  Aligned_cols=163  Identities=14%  Similarity=0.209  Sum_probs=88.4

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCccc--ccceeeecCCcc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQ--REYYSAGVPGSF  105 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~--~~~f~~~vpgSF  105 (332)
                      ++..+|+|+|||+|.+++.+...+               ..|..+|+.-|. +-+.....+.....  ...-+..+.|++
T Consensus        55 ~~~~~vLDlGcGtG~~~~~l~~~~---------------~~~~~~v~gvD~-S~~ml~~A~~~~~~~~~~~~v~~~~~d~  118 (247)
T PRK15451         55 QPGTQVYDLGCSLGAATLSVRRNI---------------HHDNCKIIAIDN-SPAMIERCRRHIDAYKAPTPVDVIEGDI  118 (247)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHhc---------------CCCCCeEEEEeC-CHHHHHHHHHHHHhcCCCCCeEEEeCCh
Confidence            345789999999999887654321               012234444442 11222222221110  000122234555


Q ss_pred             ccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeE
Q 044174          106 HHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMM  185 (332)
Q Consensus       106 y~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~m  185 (332)
                      .+-.+|  ..|+++|+.++||++.  .                                  +...+|+.-++-|+|||.+
T Consensus       119 ~~~~~~--~~D~vv~~~~l~~l~~--~----------------------------------~~~~~l~~i~~~LkpGG~l  160 (247)
T PRK15451        119 RDIAIE--NASMVVLNFTLQFLEP--S----------------------------------ERQALLDKIYQGLNPGGAL  160 (247)
T ss_pred             hhCCCC--CCCEEehhhHHHhCCH--H----------------------------------HHHHHHHHHHHhcCCCCEE
Confidence            443333  4799999999999763  1                                  1223566667888999999


Q ss_pred             EEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcc----cCcCccc-CCHHHHHHHHHhCCceE
Q 044174          186 VIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDS----FNLPIYS-ASSEEMVKLVDKNGHFS  254 (332)
Q Consensus       186 vl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~----fn~P~y~-ps~~E~~~~ie~~G~F~  254 (332)
                      ++.-.-..+...        ..+.+...|.++....-.+++++..    ... ... -|+++..+++++.| |+
T Consensus       161 ~l~e~~~~~~~~--------~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~-~~~~~~~~~~~~~L~~aG-F~  224 (247)
T PRK15451        161 VLSEKFSFEDAK--------VGELLFNMHHDFKRANGYSELEISQKRSMLEN-VMLTDSVETHKARLHKAG-FE  224 (247)
T ss_pred             EEEEecCCCcch--------hHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh-hcccCCHHHHHHHHHHcC-ch
Confidence            997432222211        1233444555544433344444432    211 233 38999999999999 65

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=98.67  E-value=3.4e-07  Score=82.29  Aligned_cols=137  Identities=15%  Similarity=0.221  Sum_probs=75.7

Q ss_pred             ceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccc-eeeecCCccccC
Q 044174           30 IIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREY-YSAGVPGSFHHR  108 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~-f~~~vpgSFy~~  108 (332)
                      .-+|+|+|||+|.+++.+.+.            +       .+|.--|+-. +.....+.......+ .+..+.+++...
T Consensus        31 ~~~vLDiGcG~G~~a~~La~~------------g-------~~V~gvD~S~-~~i~~a~~~~~~~~~~~v~~~~~d~~~~   90 (197)
T PRK11207         31 PGKTLDLGCGNGRNSLYLAAN------------G-------FDVTAWDKNP-MSIANLERIKAAENLDNLHTAVVDLNNL   90 (197)
T ss_pred             CCcEEEECCCCCHHHHHHHHC------------C-------CEEEEEeCCH-HHHHHHHHHHHHcCCCcceEEecChhhC
Confidence            468999999999999887632            0       1223333311 111111111100000 022222333332


Q ss_pred             CcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEE
Q 044174          109 LFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVII  188 (332)
Q Consensus       109 lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~  188 (332)
                      .+ ++++|+++|+.++||+..                                    .|...+++.-++-|+|||++++.
T Consensus        91 ~~-~~~fD~I~~~~~~~~~~~------------------------------------~~~~~~l~~i~~~LkpgG~~~~~  133 (197)
T PRK11207         91 TF-DGEYDFILSTVVLMFLEA------------------------------------KTIPGLIANMQRCTKPGGYNLIV  133 (197)
T ss_pred             Cc-CCCcCEEEEecchhhCCH------------------------------------HHHHHHHHHHHHHcCCCcEEEEE
Confidence            23 357999999999999742                                    13345666667778899996554


Q ss_pred             -ecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEE
Q 044174          189 -MPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVE  259 (332)
Q Consensus       189 -~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le  259 (332)
                       .....+ .+. .                              -. |-+..+.+|+++.++  | |++.+.+
T Consensus       134 ~~~~~~~-~~~-~------------------------------~~-~~~~~~~~el~~~~~--~-~~~~~~~  169 (197)
T PRK11207        134 AAMDTAD-YPC-T------------------------------VG-FPFAFKEGELRRYYE--G-WEMVKYN  169 (197)
T ss_pred             EEecCCC-CCC-C------------------------------CC-CCCccCHHHHHHHhC--C-CeEEEee
Confidence             333211 100 0                              01 235678999999887  7 8876664

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=98.67  E-value=5e-07  Score=87.42  Aligned_cols=155  Identities=8%  Similarity=0.031  Sum_probs=87.8

Q ss_pred             CceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccc--cceeeecCCccc
Q 044174           29 NIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQR--EYYSAGVPGSFH  106 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~--~~f~~~vpgSFy  106 (332)
                      +..+|+|+|||+|..+..+...                   ..+|+--|.-.. .-...+......  .--+.-+-+++.
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~-------------------g~~V~GID~s~~-~i~~Ar~~~~~~~~~~~i~~~~~dae  190 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARM-------------------GATVTGVDAVDK-NVKIARLHADMDPVTSTIEYLCTTAE  190 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHc-------------------CCEEEEEeCCHH-HHHHHHHHHHhcCcccceeEEecCHH
Confidence            3469999999999988765421                   123333332211 111111110000  001223345555


Q ss_pred             cCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEE
Q 044174          107 HRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMV  186 (332)
Q Consensus       107 ~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mv  186 (332)
                      +-.++++++|+|+|..+|||+...+                                      .||+.-++-|||||+++
T Consensus       191 ~l~~~~~~FD~Vi~~~vLeHv~d~~--------------------------------------~~L~~l~r~LkPGG~li  232 (322)
T PLN02396        191 KLADEGRKFDAVLSLEVIEHVANPA--------------------------------------EFCKSLSALTIPNGATV  232 (322)
T ss_pred             HhhhccCCCCEEEEhhHHHhcCCHH--------------------------------------HHHHHHHHHcCCCcEEE
Confidence            5556788999999999999966521                                      35666667788999999


Q ss_pred             EEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCc-ccCCHHHHHHHHHhCCceEEeEEE
Q 044174          187 IIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPI-YSASSEEMVKLVDKNGHFSIKTVE  259 (332)
Q Consensus       187 l~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~-y~ps~~E~~~~ie~~G~F~I~~le  259 (332)
                      +....+..        .. .+..+..  .+.+. +.+..     -...| .+.+++|++.++++.| |++..+.
T Consensus       233 ist~nr~~--------~~-~~~~i~~--~eyi~-~~lp~-----gth~~~~f~tp~eL~~lL~~aG-f~i~~~~  288 (322)
T PLN02396        233 LSTINRTM--------RA-YASTIVG--AEYIL-RWLPK-----GTHQWSSFVTPEELSMILQRAS-VDVKEMA  288 (322)
T ss_pred             EEECCcCH--------HH-HHHhhhh--HHHHH-hcCCC-----CCcCccCCCCHHHHHHHHHHcC-CeEEEEe
Confidence            99875421        01 1111100  01111 11111     11122 4789999999999999 9998887

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=98.57  E-value=1.2e-06  Score=85.22  Aligned_cols=147  Identities=16%  Similarity=0.223  Sum_probs=89.3

Q ss_pred             CceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCccccC
Q 044174           29 NIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHR  108 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~~  108 (332)
                      ...+|+|+|||+|..++.+++..                 +..+|...|+-. +.....+......+  +..+.|+..+.
T Consensus       113 ~~~~VLDLGcGtG~~~l~La~~~-----------------~~~~VtgVD~S~-~mL~~A~~k~~~~~--i~~i~gD~e~l  172 (340)
T PLN02490        113 RNLKVVDVGGGTGFTTLGIVKHV-----------------DAKNVTILDQSP-HQLAKAKQKEPLKE--CKIIEGDAEDL  172 (340)
T ss_pred             CCCEEEEEecCCcHHHHHHHHHC-----------------CCCEEEEEECCH-HHHHHHHHhhhccC--CeEEeccHHhC
Confidence            35799999999999887664321                 113455566522 22222322211111  12256777777


Q ss_pred             CcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEE
Q 044174          109 LFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVII  188 (332)
Q Consensus       109 lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~  188 (332)
                      -+|++++|+++|+.++|++...                                      ...|+.-.+-|+|||++++.
T Consensus       173 p~~~~sFDvVIs~~~L~~~~d~--------------------------------------~~~L~e~~rvLkPGG~LvIi  214 (340)
T PLN02490        173 PFPTDYADRYVSAGSIEYWPDP--------------------------------------QRGIKEAYRVLKIGGKACLI  214 (340)
T ss_pred             CCCCCceeEEEEcChhhhCCCH--------------------------------------HHHHHHHHHhcCCCcEEEEE
Confidence            7889999999999999985431                                      12455566778899999876


Q ss_pred             ecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEeCC
Q 044174          189 MPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELTNP  263 (332)
Q Consensus       189 ~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~p  263 (332)
                      -....+           .  .+..-+.+                .-..+|+.+|+.+.+++.| |+..+++.+.|
T Consensus       215 ~~~~p~-----------~--~~~r~~~~----------------~~~~~~t~eEl~~lL~~aG-F~~V~i~~i~~  259 (340)
T PLN02490        215 GPVHPT-----------F--WLSRFFAD----------------VWMLFPKEEEYIEWFTKAG-FKDVKLKRIGP  259 (340)
T ss_pred             EecCcc-----------h--hHHHHhhh----------------hhccCCCHHHHHHHHHHCC-CeEEEEEEcCh
Confidence            322111           0  01111110                0113589999999999999 98877776543

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=98.56  E-value=6.5e-07  Score=81.24  Aligned_cols=143  Identities=15%  Similarity=0.163  Sum_probs=82.8

Q ss_pred             EEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcC-ccc-ccceeeecCCccccCC
Q 044174           32 RLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSL-PQQ-REYYSAGVPGSFHHRL  109 (332)
Q Consensus        32 ~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l-~~~-~~~f~~~vpgSFy~~l  109 (332)
                      +|+|+|||+|..+..+++..                 +..+|.-.|+ +-+.-...+.. ... -.--+..+.+.+....
T Consensus         2 ~vLDiGcG~G~~~~~la~~~-----------------~~~~v~gid~-s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~   63 (224)
T smart00828        2 RVLDFGCGYGSDLIDLAERH-----------------PHLQLHGYTI-SPEQAEVGRERIRALGLQGRIRIFYRDSAKDP   63 (224)
T ss_pred             eEEEECCCCCHHHHHHHHHC-----------------CCCEEEEEEC-CHHHHHHHHHHHHhcCCCcceEEEecccccCC
Confidence            69999999999877664421                 1223344444 11111111111 100 0001112223333333


Q ss_pred             cCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEe
Q 044174          110 FPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIM  189 (332)
Q Consensus       110 fP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~~  189 (332)
                      +| +++|+++|..++|++..                                      +..+|+.-++-|+|||++++.-
T Consensus        64 ~~-~~fD~I~~~~~l~~~~~--------------------------------------~~~~l~~~~~~LkpgG~l~i~~  104 (224)
T smart00828       64 FP-DTYDLVFGFEVIHHIKD--------------------------------------KMDLFSNISRHLKDGGHLVLAD  104 (224)
T ss_pred             CC-CCCCEeehHHHHHhCCC--------------------------------------HHHHHHHHHHHcCCCCEEEEEE
Confidence            34 48999999999998533                                      2346667778889999999875


Q ss_pred             cccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEeC
Q 044174          190 PGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELTN  262 (332)
Q Consensus       190 ~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~  262 (332)
                      .......   .                      .     ..-..+.|+++.+|+.+.+++.| |++...+.+.
T Consensus       105 ~~~~~~~---~----------------------~-----~~~~~~~~~~s~~~~~~~l~~~G-f~~~~~~~~~  146 (224)
T smart00828      105 FIANLLS---A----------------------I-----EHEETTSYLVTREEWAELLARNN-LRVVEGVDAS  146 (224)
T ss_pred             cccccCc---c----------------------c-----cccccccccCCHHHHHHHHHHCC-CeEEEeEECc
Confidence            4321100   0                      0     00113557899999999999999 9998877654

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.54  E-value=3e-07  Score=70.90  Aligned_cols=95  Identities=21%  Similarity=0.224  Sum_probs=57.3

Q ss_pred             EeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCccccCCcCCC
Q 044174           34 ADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHRLFPQS  113 (332)
Q Consensus        34 aD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~~lfP~~  113 (332)
                      +|+|||+|.++..+.+.                  +...|+-.|.-.. .....+.......  +.-+-+++..-.||++
T Consensus         1 LdiG~G~G~~~~~l~~~------------------~~~~v~~~D~~~~-~~~~~~~~~~~~~--~~~~~~d~~~l~~~~~   59 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR------------------GGASVTGIDISEE-MLEQARKRLKNEG--VSFRQGDAEDLPFPDN   59 (95)
T ss_dssp             EEET-TTSHHHHHHHHT------------------TTCEEEEEES-HH-HHHHHHHHTTTST--EEEEESBTTSSSS-TT
T ss_pred             CEecCcCCHHHHHHHhc------------------cCCEEEEEeCCHH-HHHHHHhcccccC--chheeehHHhCccccc
Confidence            69999999999887653                  0122222222111 1111111111111  1146677888899999


Q ss_pred             ceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEE
Q 044174          114 SIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVI  187 (332)
Q Consensus       114 svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl  187 (332)
                      |+|+++|+.++||+   +                                   |...+++.=++-|||||++++
T Consensus        60 sfD~v~~~~~~~~~---~-----------------------------------~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   60 SFDVVFSNSVLHHL---E-----------------------------------DPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             -EEEEEEESHGGGS---S-----------------------------------HHHHHHHHHHHHEEEEEEEEE
T ss_pred             cccccccccceeec---c-----------------------------------CHHHHHHHHHHHcCcCeEEeC
Confidence            99999999999997   1                                   334566667788889999985

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=98.48  E-value=1.5e-06  Score=78.75  Aligned_cols=167  Identities=16%  Similarity=0.153  Sum_probs=91.5

Q ss_pred             ceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcC-ccc-ccceeeecCCcccc
Q 044174           30 IIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSL-PQQ-REYYSAGVPGSFHH  107 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l-~~~-~~~f~~~vpgSFy~  107 (332)
                      ..+|+|+|||+|..+..+....                ++..+++..|+..+-. ...+.. ... ..--+..+-+++..
T Consensus        52 ~~~vldiG~G~G~~~~~l~~~~----------------~~~~~v~~~D~s~~~~-~~a~~~~~~~~~~~~~~~~~~d~~~  114 (239)
T PRK00216         52 GDKVLDLACGTGDLAIALAKAV----------------GKTGEVVGLDFSEGML-AVGREKLRDLGLSGNVEFVQGDAEA  114 (239)
T ss_pred             CCeEEEeCCCCCHHHHHHHHHc----------------CCCCeEEEEeCCHHHH-HHHHHhhcccccccCeEEEeccccc
Confidence            4799999999999887764422                1134566666633211 122221 110 00112234456666


Q ss_pred             CCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEE
Q 044174          108 RLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVI  187 (332)
Q Consensus       108 ~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl  187 (332)
                      ..++++++|++++++++|++++.+                                      .+|+.-.+-|+|||++++
T Consensus       115 ~~~~~~~~D~I~~~~~l~~~~~~~--------------------------------------~~l~~~~~~L~~gG~li~  156 (239)
T PRK00216        115 LPFPDNSFDAVTIAFGLRNVPDID--------------------------------------KALREMYRVLKPGGRLVI  156 (239)
T ss_pred             CCCCCCCccEEEEecccccCCCHH--------------------------------------HHHHHHHHhccCCcEEEE
Confidence            667888999999999999865422                                      345555677889999988


Q ss_pred             EecccCCCCCCCCcchhHHHHHHHHHHHH-HHH-hh-ccch--hhhccc-CcCcccCCHHHHHHHHHhCCceEEeEEEEe
Q 044174          188 IMPGIPYGMPYSHLTNGVMYDLMATIFME-LAN-EQ-LITE--AELDSF-NLPIYSASSEEMVKLVDKNGHFSIKTVELT  261 (332)
Q Consensus       188 ~~~gr~~~~~~~~~~~~~~~~~l~~al~~-mv~-eG-li~~--e~~d~f-n~P~y~ps~~E~~~~ie~~G~F~I~~le~~  261 (332)
                      .-...++...         +..+...+.. +.. -+ ....  +....+ +.--.+++.+++..++++.| |++.+...+
T Consensus       157 ~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG-f~~~~~~~~  226 (239)
T PRK00216        157 LEFSKPTNPP---------LKKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPDQEELAAMLEEAG-FERVRYRNL  226 (239)
T ss_pred             EEecCCCchH---------HHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCCHHHHHHHHHhCC-Cceeeeeee
Confidence            7554432210         1111121111 000 00 0000  000000 00123579999999999999 998777754

>TIGR00477 tehB tellurite resistance protein TehB

Probab=98.47  E-value=3.9e-06  Score=75.27  Aligned_cols=103  Identities=13%  Similarity=0.182  Sum_probs=57.5

Q ss_pred             ceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCccccCC
Q 044174           30 IIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHRL  109 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~~l  109 (332)
                      +.+|+|+|||+|.+++.+++.            +       .+|+--|.-. +.-...+.......+=+....+..-..-
T Consensus        31 ~~~vLDiGcG~G~~a~~la~~------------g-------~~V~~iD~s~-~~l~~a~~~~~~~~~~v~~~~~d~~~~~   90 (195)
T TIGR00477        31 PCKTLDLGCGQGRNSLYLSLA------------G-------YDVRAWDHNP-ASIASVLDMKARENLPLRTDAYDINAAA   90 (195)
T ss_pred             CCcEEEeCCCCCHHHHHHHHC------------C-------CeEEEEECCH-HHHHHHHHHHHHhCCCceeEeccchhcc
Confidence            469999999999999887631            0       1334444421 2222222111110000111111111111


Q ss_pred             cCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEe
Q 044174          110 FPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIM  189 (332)
Q Consensus       110 fP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~~  189 (332)
                      + ++++|+++|+.++||++.                                    .++..+++.-++-|+|||++++..
T Consensus        91 ~-~~~fD~I~~~~~~~~~~~------------------------------------~~~~~~l~~~~~~LkpgG~lli~~  133 (195)
T TIGR00477        91 L-NEDYDFIFSTVVFMFLQA------------------------------------GRVPEIIANMQAHTRPGGYNLIVA  133 (195)
T ss_pred             c-cCCCCEEEEecccccCCH------------------------------------HHHHHHHHHHHHHhCCCcEEEEEE
Confidence            2 357999999999999643                                    134456777778889999966543

Part of a tellurite-reducing operon tehA and tehB

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=98.45  E-value=2.2e-05  Score=77.73  Aligned_cols=130  Identities=6%  Similarity=0.040  Sum_probs=79.4

Q ss_pred             CCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEecc
Q 044174          112 QSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIMPG  191 (332)
Q Consensus       112 ~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~~~g  191 (332)
                      ++++|.++|...+||+..                                    +++..+++.-.+-|+|||++++...+
T Consensus       226 ~~~fD~Ivs~~~~ehvg~------------------------------------~~~~~~l~~i~r~LkpGG~lvl~~i~  269 (383)
T PRK11705        226 NGQFDRIVSVGMFEHVGP------------------------------------KNYRTYFEVVRRCLKPDGLFLLHTIG  269 (383)
T ss_pred             CCCCCEEEEeCchhhCCh------------------------------------HHHHHHHHHHHHHcCCCcEEEEEEcc
Confidence            478999999988888521                                    23445666777888899999999877


Q ss_pred             cCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCc-ccCCHHHHHHHHHhCCceEEeEEEEeCCCCCCCCC
Q 044174          192 IPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPI-YSASSEEMVKLVDKNGHFSIKTVELTNPTSWLEGP  270 (332)
Q Consensus       192 r~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~-y~ps~~E~~~~ie~~G~F~I~~le~~~p~~~~~~~  270 (332)
                      .+......            .             .-++.+.+|- +.|+.+++....+ .| |.|+.++.+.+       
T Consensus       270 ~~~~~~~~------------~-------------~~i~~yifp~g~lps~~~i~~~~~-~~-~~v~d~~~~~~-------  315 (383)
T PRK11705        270 SNKTDTNV------------D-------------PWINKYIFPNGCLPSVRQIAQASE-GL-FVMEDWHNFGA-------  315 (383)
T ss_pred             CCCCCCCC------------C-------------CCceeeecCCCcCCCHHHHHHHHH-CC-cEEEEEecChh-------
Confidence            65421100            0             0123344563 7899999999877 46 99988876532       


Q ss_pred             ccHHHHHHHHHHHHhh--HHHhhhCHHHHHHHHHHHHHHHHhch
Q 044174          271 IDIKAWTMHVRAAMEA--MFSKHFRIEIIDEMFNRLIRRLFEFS  312 (332)
Q Consensus       271 ~~~~~~a~~iRa~~ep--ll~~hfg~~i~delf~r~~~~v~~~l  312 (332)
                      .+++++..|.+.|...  -+.+-+|++.. ..+..|-...+...
T Consensus       316 hy~~TL~~W~~~f~~~~~~~~~~~~~~~~-r~w~~yl~~~~~~F  358 (383)
T PRK11705        316 DYDRTLMAWHENFEAAWPELADNYSERFY-RMWRYYLLSCAGAF  358 (383)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHHHHH
Confidence            2446666776555443  12334554432 23444444444433

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=98.43  E-value=6.1e-07  Score=83.00  Aligned_cols=169  Identities=18%  Similarity=0.218  Sum_probs=62.0

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcC-cccccceeeecCCccc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSL-PQQREYYSAGVPGSFH  106 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l-~~~~~~f~~~vpgSFy  106 (332)
                      ....+|+|+|||+|..|+.+...        .        .|...|.--|.-. +-..+.+.. ......-+.-+-|+..
T Consensus        46 ~~g~~vLDv~~GtG~~~~~l~~~--------~--------~~~~~v~~vD~s~-~ML~~a~~k~~~~~~~~i~~v~~da~  108 (233)
T PF01209_consen   46 RPGDRVLDVACGTGDVTRELARR--------V--------GPNGKVVGVDISP-GMLEVARKKLKREGLQNIEFVQGDAE  108 (233)
T ss_dssp             -S--EEEEET-TTSHHHHHHGGG--------S--------S---EEEEEES-H-HHHHHHHHHHHHTT--SEEEEE-BTT
T ss_pred             CCCCEEEEeCCChHHHHHHHHHH--------C--------CCccEEEEecCCH-HHHHHHHHHHHhhCCCCeeEEEcCHH
Confidence            44579999999999988776321        1        1223444443321 112222211 1111114455667778


Q ss_pred             cCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEE
Q 044174          107 HRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMV  186 (332)
Q Consensus       107 ~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mv  186 (332)
                      +-.||++|+|.+.+++.+|-+...+                                      ..|+.-.+-|||||+++
T Consensus       109 ~lp~~d~sfD~v~~~fglrn~~d~~--------------------------------------~~l~E~~RVLkPGG~l~  150 (233)
T PF01209_consen  109 DLPFPDNSFDAVTCSFGLRNFPDRE--------------------------------------RALREMYRVLKPGGRLV  150 (233)
T ss_dssp             B--S-TT-EEEEEEES-GGG-SSHH--------------------------------------HHHHHHHHHEEEEEEEE
T ss_pred             HhcCCCCceeEEEHHhhHHhhCCHH--------------------------------------HHHHHHHHHcCCCeEEE
Confidence            8889999999999999999865422                                      23444556788999999


Q ss_pred             EEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhccc----CcCcccCCHHHHHHHHHhCCceEEeEEE
Q 044174          187 IIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSF----NLPIYSASSEEMVKLVDKNGHFSIKTVE  259 (332)
Q Consensus       187 l~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f----n~P~y~ps~~E~~~~ie~~G~F~I~~le  259 (332)
                      +.-.++++...     ...++...-..+.=. --+++..+ .+.+    ..-.-||+.+|+.+.+++.| |+..+.+
T Consensus       151 ile~~~p~~~~-----~~~~~~~y~~~ilP~-~g~l~~~~-~~~Y~yL~~Si~~f~~~~~~~~~l~~~G-f~~v~~~  219 (233)
T PF01209_consen  151 ILEFSKPRNPL-----LRALYKFYFKYILPL-IGRLLSGD-REAYRYLPESIRRFPSPEELKELLEEAG-FKNVEYR  219 (233)
T ss_dssp             EEEEEB-SSHH-----HHHHHHH------------------------------------------------------
T ss_pred             EeeccCCCCch-----hhceeeeeecccccc-cccccccc-cccccccccccccccccccccccccccc-ccccccc
Confidence            98888765321     112222111111000 01222222 1111    12235789999999999999 8754443

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=98.42  E-value=3.9e-06  Score=75.26  Aligned_cols=165  Identities=14%  Similarity=0.179  Sum_probs=91.3

Q ss_pred             CceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhc-CcccccceeeecCCcccc
Q 044174           29 NIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTS-LPQQREYYSAGVPGSFHH  107 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~-l~~~~~~f~~~vpgSFy~  107 (332)
                      +..+|+|+|||+|..+..++...                +...+++.-|.-. +.-...+. .....+  +.-+.+++..
T Consensus        39 ~~~~vldiG~G~G~~~~~~~~~~----------------~~~~~~~~iD~~~-~~~~~~~~~~~~~~~--i~~~~~d~~~   99 (223)
T TIGR01934        39 KGQKVLDVACGTGDLAIELAKSA----------------PDRGKVTGVDFSS-EMLEVAKKKSELPLN--IEFIQADAEA   99 (223)
T ss_pred             CCCeEEEeCCCCChhHHHHHHhc----------------CCCceEEEEECCH-HHHHHHHHHhccCCC--ceEEecchhc
Confidence            46799999999999887664321                1114555555422 22222111 111111  1223466666


Q ss_pred             CCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEE
Q 044174          108 RLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVI  187 (332)
Q Consensus       108 ~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl  187 (332)
                      ..++++++|+++++..+|+...                                      ...+|+.-.+-|+|||++++
T Consensus       100 ~~~~~~~~D~i~~~~~~~~~~~--------------------------------------~~~~l~~~~~~L~~gG~l~~  141 (223)
T TIGR01934       100 LPFEDNSFDAVTIAFGLRNVTD--------------------------------------IQKALREMYRVLKPGGRLVI  141 (223)
T ss_pred             CCCCCCcEEEEEEeeeeCCccc--------------------------------------HHHHHHHHHHHcCCCcEEEE
Confidence            6678889999999999998543                                      12356677788899999997


Q ss_pred             EecccCCCCCCCCcchhHHHHHHHHHHHH-HHH--hhccchhhhcccC----cCcccCCHHHHHHHHHhCCceEEeEEEE
Q 044174          188 IMPGIPYGMPYSHLTNGVMYDLMATIFME-LAN--EQLITEAELDSFN----LPIYSASSEEMVKLVDKNGHFSIKTVEL  260 (332)
Q Consensus       188 ~~~gr~~~~~~~~~~~~~~~~~l~~al~~-mv~--eGli~~e~~d~fn----~P~y~ps~~E~~~~ie~~G~F~I~~le~  260 (332)
                      .-.-.....         .+..+.+.+.. +..  .+..... .+.+.    ...-+++.+|++.++++.| |++...+.
T Consensus       142 ~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~aG-f~~~~~~~  210 (223)
T TIGR01934       142 LEFSKPANA---------LLKKFYKFYLKNVLPSIGGLISKN-AEAYTYLPESIRAFPSQEELAAMLKEAG-FEEVRYRS  210 (223)
T ss_pred             EEecCCCch---------hhHHHHHHHHHHhhhhhhhhhcCC-chhhHHHHHHHHhCCCHHHHHHHHHHcC-Cccceeee
Confidence            654322211         12222222221 110  0111100 11111    0112578999999999999 98877764


Q ss_pred             e
Q 044174          261 T  261 (332)
Q Consensus       261 ~  261 (332)
                      .
T Consensus       211 ~  211 (223)
T TIGR01934       211 L  211 (223)
T ss_pred             e
Confidence            4

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=98.41  E-value=1.9e-06  Score=69.15  Aligned_cols=95  Identities=22%  Similarity=0.342  Sum_probs=65.9

Q ss_pred             ceEEEeecCCCCcchHHHHH--------------HHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCccccc
Q 044174           30 IIRLADLGCAVGSNTINAMQ--------------DVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQRE   95 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~~--------------~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~   95 (332)
                      .-+|+|+|||+|..++.+.+              ..++..+++.....   ..+.+++...|+ ..++..          
T Consensus         2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~i~~~~~d~-~~~~~~----------   67 (112)
T PF12847_consen    2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEG---LSDRITFVQGDA-EFDPDF----------   67 (112)
T ss_dssp             TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTT---TTTTEEEEESCC-HGGTTT----------
T ss_pred             CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcC---CCCCeEEEECcc-ccCccc----------
Confidence            36899999999999999987              56666666653321   245677777776 211111          


Q ss_pred             ceeeecCCccccCCcCCCceeEEEecC-ccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHH
Q 044174           96 YYSAGVPGSFHHRLFPQSSIHFAHCSY-ALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNA  174 (332)
Q Consensus        96 ~f~~~vpgSFy~~lfP~~svd~~~S~~-alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~  174 (332)
                                      .+.+|+++++. ++|++-..                                   .+...+|+.
T Consensus        68 ----------------~~~~D~v~~~~~~~~~~~~~-----------------------------------~~~~~~l~~   96 (112)
T PF12847_consen   68 ----------------LEPFDLVICSGFTLHFLLPL-----------------------------------DERRRVLER   96 (112)
T ss_dssp             ----------------SSCEEEEEECSGSGGGCCHH-----------------------------------HHHHHHHHH
T ss_pred             ----------------CCCCCEEEECCCccccccch-----------------------------------hHHHHHHHH
Confidence                            12399999999 67753221                                   355667888


Q ss_pred             HHHhhccCCeEEEEe
Q 044174          175 RAEEIVSGGMMVIIM  189 (332)
Q Consensus       175 Ra~EL~pGG~mvl~~  189 (332)
                      -.+-|+|||+|++.-
T Consensus        97 ~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   97 IRRLLKPGGRLVINT  111 (112)
T ss_dssp             HHHHEEEEEEEEEEE
T ss_pred             HHHhcCCCcEEEEEE
Confidence            889999999999863

...

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=98.39  E-value=4.2e-06  Score=79.49  Aligned_cols=76  Identities=16%  Similarity=0.296  Sum_probs=52.1

Q ss_pred             CCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEecc
Q 044174          112 QSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIMPG  191 (332)
Q Consensus       112 ~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~~~g  191 (332)
                      ++++|+++|+.++|++..                                    .++..+|+.-.+-|+|||++++....
T Consensus       182 ~~~fD~I~~~~vl~~l~~------------------------------------~~~~~~l~~~~~~LkpgG~~l~v~~~  225 (287)
T PRK12335        182 QEEYDFILSTVVLMFLNR------------------------------------ERIPAIIKNMQEHTNPGGYNLIVCAM  225 (287)
T ss_pred             cCCccEEEEcchhhhCCH------------------------------------HHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            568999999999999742                                    24456777777889999997775433


Q ss_pred             cCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcC-cccCCHHHHHHHHHhCCceEEeEEE
Q 044174          192 IPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLP-IYSASSEEMVKLVDKNGHFSIKTVE  259 (332)
Q Consensus       192 r~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P-~y~ps~~E~~~~ie~~G~F~I~~le  259 (332)
                      ..+..+                                 ...| -+..+.+|+++.+..   |+|.+.+
T Consensus       226 ~~~~~~---------------------------------~~~p~~~~~~~~el~~~~~~---~~i~~~~  258 (287)
T PRK12335        226 DTEDYP---------------------------------CPMPFSFTFKEGELKDYYQD---WEIVKYN  258 (287)
T ss_pred             ccccCC---------------------------------CCCCCCcccCHHHHHHHhCC---CEEEEEe
Confidence            221100                                 1123 356779999998853   8887774

>PRK06202 hypothetical protein; Provisional

Probab=98.33  E-value=1.1e-05  Score=74.03  Aligned_cols=85  Identities=15%  Similarity=0.222  Sum_probs=49.6

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccc-eeeecCCccc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREY-YSAGVPGSFH  106 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~-f~~~vpgSFy  106 (332)
                      .+..+|+|+|||+|..+..+....    .+    .     .+..+|.-.|+-. +.-...+......++ +..+....+ 
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~----~~----~-----g~~~~v~gvD~s~-~~l~~a~~~~~~~~~~~~~~~~~~l-  123 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWA----RR----D-----GLRLEVTAIDPDP-RAVAFARANPRRPGVTFRQAVSDEL-  123 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHH----Hh----C-----CCCcEEEEEcCCH-HHHHHHHhccccCCCeEEEEecccc-
Confidence            456799999999999887654321    11    1     2345677777633 333333333221111 222211111 


Q ss_pred             cCCcCCCceeEEEecCccccccC
Q 044174          107 HRLFPQSSIHFAHCSYALHWLSK  129 (332)
Q Consensus       107 ~~lfP~~svd~~~S~~alHWLs~  129 (332)
                        .++++++|+++|+.+|||+..
T Consensus       124 --~~~~~~fD~V~~~~~lhh~~d  144 (232)
T PRK06202        124 --VAEGERFDVVTSNHFLHHLDD  144 (232)
T ss_pred             --cccCCCccEEEECCeeecCCh
Confidence              237889999999999999754

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=98.31  E-value=8.2e-05  Score=70.49  Aligned_cols=75  Identities=17%  Similarity=0.260  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHhhccCCeEEEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCc-ccCCHHHHH
Q 044174          166 KDMENFLNARAEEIVSGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPI-YSASSEEMV  244 (332)
Q Consensus       166 ~d~~~fL~~Ra~EL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~-y~ps~~E~~  244 (332)
                      +++..|++.-++-|+|||++++...+..+......       ......|             +..+-+|- +.||.+|+.
T Consensus       143 ~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~-------~~~~~~~-------------i~kyiFPgg~lps~~~~~  202 (273)
T PF02353_consen  143 KNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAE-------RRSSSDF-------------IRKYIFPGGYLPSLSEIL  202 (273)
T ss_dssp             GGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHC-------TTCCCHH-------------HHHHTSTTS---BHHHHH
T ss_pred             hHHHHHHHHHHHhcCCCcEEEEEecccccccchhh-------cCCCceE-------------EEEeeCCCCCCCCHHHHH
Confidence            45677888889999999999999777543210000       0000011             12233444 678999999


Q ss_pred             HHHHhCCceEEeEEEEe
Q 044174          245 KLVDKNGHFSIKTVELT  261 (332)
Q Consensus       245 ~~ie~~G~F~I~~le~~  261 (332)
                      ..+++.| |+|...+.+
T Consensus       203 ~~~~~~~-l~v~~~~~~  218 (273)
T PF02353_consen  203 RAAEDAG-LEVEDVENL  218 (273)
T ss_dssp             HHHHHTT--EEEEEEE-
T ss_pred             HHHhcCC-EEEEEEEEc
Confidence            9999999 999988865

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=98.29  E-value=1.9e-05  Score=75.51  Aligned_cols=153  Identities=11%  Similarity=0.159  Sum_probs=89.8

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhc-Cccc-ccceeeecCCcc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTS-LPQQ-REYYSAGVPGSF  105 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~-l~~~-~~~f~~~vpgSF  105 (332)
                      .+..+|+|+|||+|..++.+.+.                 .|..++..-|+|.  --...+. +... ..--+..++|+|
T Consensus       148 ~~~~~vlDiG~G~G~~~~~~~~~-----------------~p~~~~~~~D~~~--~~~~a~~~~~~~gl~~rv~~~~~d~  208 (306)
T TIGR02716       148 DGVKKMIDVGGGIGDISAAMLKH-----------------FPELDSTILNLPG--AIDLVNENAAEKGVADRMRGIAVDI  208 (306)
T ss_pred             CCCCEEEEeCCchhHHHHHHHHH-----------------CCCCEEEEEecHH--HHHHHHHHHHhCCccceEEEEecCc
Confidence            34579999999999887766432                 2456777778862  3333322 1111 122466788999


Q ss_pred             ccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeE
Q 044174          106 HHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMM  185 (332)
Q Consensus       106 y~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~m  185 (332)
                      +...+|.  .|+++.+..+|-...                                    .+-..+|+.=++-|+|||++
T Consensus       209 ~~~~~~~--~D~v~~~~~lh~~~~------------------------------------~~~~~il~~~~~~L~pgG~l  250 (306)
T TIGR02716       209 YKESYPE--ADAVLFCRILYSANE------------------------------------QLSTIMCKKAFDAMRSGGRL  250 (306)
T ss_pred             cCCCCCC--CCEEEeEhhhhcCCh------------------------------------HHHHHHHHHHHHhcCCCCEE
Confidence            9766776  499988888883211                                    01224566667889999999


Q ss_pred             EEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEe
Q 044174          186 VIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIK  256 (332)
Q Consensus       186 vl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~  256 (332)
                      ++.=.-.++...  .     .+..+...+..+   |..       + .+.-+++.+|+.+++++.| |+..
T Consensus       251 ~i~d~~~~~~~~--~-----~~~~~~~~~~~~---~~~-------~-~~~~~~~~~e~~~ll~~aG-f~~v  302 (306)
T TIGR02716       251 LILDMVIDDPEN--P-----NFDYLSHYILGA---GMP-------F-SVLGFKEQARYKEILESLG-YKDV  302 (306)
T ss_pred             EEEEeccCCCCC--c-----hhhHHHHHHHHc---ccc-------c-ccccCCCHHHHHHHHHHcC-CCee
Confidence            887432222110  0     111222222111   211       0 1123556899999999999 8643

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.26  E-value=1.3e-06  Score=78.04  Aligned_cols=27  Identities=11%  Similarity=0.068  Sum_probs=24.0

Q ss_pred             cccCCHHHHHHHHHhCCceEEeEEEEeC
Q 044174          235 IYSASSEEMVKLVDKNGHFSIKTVELTN  262 (332)
Q Consensus       235 ~y~ps~~E~~~~ie~~G~F~I~~le~~~  262 (332)
                      ..++|.+|+.+++++.| |+|...+.++
T Consensus       143 ~~~~s~~~~~~ll~~~G-f~v~~~~~~~  169 (194)
T TIGR02081       143 IHFCTIADFEDLCGELN-LRILDRAAFD  169 (194)
T ss_pred             cccCcHHHHHHHHHHCC-CEEEEEEEec
Confidence            45789999999999999 9999988774

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=98.18  E-value=7.4e-06  Score=73.66  Aligned_cols=91  Identities=20%  Similarity=0.324  Sum_probs=60.2

Q ss_pred             ceEEEeecCCCCcchHHHH------------HHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccce
Q 044174           30 IIRLADLGCAVGSNTINAM------------QDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYY   97 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~------------~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f   97 (332)
                      +-+++|+|||.|.||+-++            ...++.+.+.....+     -+|+...-|+-.-++              
T Consensus        31 ~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~-----l~i~~~~~Dl~~~~~--------------   91 (192)
T PF03848_consen   31 PGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEG-----LDIRTRVADLNDFDF--------------   91 (192)
T ss_dssp             SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT------TEEEEE-BGCCBS---------------
T ss_pred             CCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcC-----ceeEEEEecchhccc--------------
Confidence            5699999999999999998            345555555433322     237777777633222              


Q ss_pred             eeecCCccccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 044174           98 SAGVPGSFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAE  177 (332)
Q Consensus        98 ~~~vpgSFy~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~  177 (332)
                                   | +.+|+++|...+|.|..  +                                  .+..+++...+
T Consensus        92 -------------~-~~yD~I~st~v~~fL~~--~----------------------------------~~~~i~~~m~~  121 (192)
T PF03848_consen   92 -------------P-EEYDFIVSTVVFMFLQR--E----------------------------------LRPQIIENMKA  121 (192)
T ss_dssp             -------------T-TTEEEEEEESSGGGS-G--G----------------------------------GHHHHHHHHHH
T ss_pred             -------------c-CCcCEEEEEEEeccCCH--H----------------------------------HHHHHHHHHHh
Confidence                         2 47899999999999764  1                                  12235566668


Q ss_pred             hhccCCeEEEEe
Q 044174          178 EIVSGGMMVIIM  189 (332)
Q Consensus       178 EL~pGG~mvl~~  189 (332)
                      .++|||.++++.
T Consensus       122 ~~~pGG~~li~~  133 (192)
T PF03848_consen  122 ATKPGGYNLIVT  133 (192)
T ss_dssp             TEEEEEEEEEEE
T ss_pred             hcCCcEEEEEEE
Confidence            899999988854

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=98.17  E-value=7.3e-05  Score=67.82  Aligned_cols=29  Identities=14%  Similarity=0.253  Sum_probs=25.1

Q ss_pred             cCcccCCHHHHHHHHHhCCceEEeEEEEeC
Q 044174          233 LPIYSASSEEMVKLVDKNGHFSIKTVELTN  262 (332)
Q Consensus       233 ~P~y~ps~~E~~~~ie~~G~F~I~~le~~~  262 (332)
                      .++|+++.+|+.+++++.| |++...+.+.
T Consensus       180 ~~~~~~~~~~~~~~l~~~G-f~v~~~~~~~  208 (219)
T TIGR02021       180 TSAYLHPMTDLERALGELG-WKIVREGLVS  208 (219)
T ss_pred             cceEEecHHHHHHHHHHcC-ceeeeeeccc
Confidence            5678899999999999999 9998887553

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=98.14  E-value=4.2e-05  Score=71.66  Aligned_cols=155  Identities=14%  Similarity=0.050  Sum_probs=84.2

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCc-ccccceeeecCCccc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLP-QQREYYSAGVPGSFH  106 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~-~~~~~f~~~vpgSFy  106 (332)
                      ...-+|+|+|||+|..++.+....                .+.-+|+--|.-. ..-...+... ...---+.-+.|++.
T Consensus        76 ~~g~~VLDiG~G~G~~~~~~a~~~----------------g~~~~v~gvD~s~-~~l~~A~~~~~~~g~~~v~~~~~d~~  138 (272)
T PRK11873         76 KPGETVLDLGSGGGFDCFLAARRV----------------GPTGKVIGVDMTP-EMLAKARANARKAGYTNVEFRLGEIE  138 (272)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHh----------------CCCCEEEEECCCH-HHHHHHHHHHHHcCCCCEEEEEcchh
Confidence            445799999999998776543211                1123444444421 1122222110 000001223445666


Q ss_pred             cCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEE
Q 044174          107 HRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMV  186 (332)
Q Consensus       107 ~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mv  186 (332)
                      .-.+|++++|+++|+.++||....+                                      ..|+.-.+-|+|||+++
T Consensus       139 ~l~~~~~~fD~Vi~~~v~~~~~d~~--------------------------------------~~l~~~~r~LkpGG~l~  180 (272)
T PRK11873        139 ALPVADNSVDVIISNCVINLSPDKE--------------------------------------RVFKEAFRVLKPGGRFA  180 (272)
T ss_pred             hCCCCCCceeEEEEcCcccCCCCHH--------------------------------------HHHHHHHHHcCCCcEEE
Confidence            6567889999999999999853311                                      13334446788999999


Q ss_pred             EEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEe
Q 044174          187 IIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELT  261 (332)
Q Consensus       187 l~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~  261 (332)
                      +.-.......          .+.+...+. +. .|.           .....+.+|+..++++.| |...++...
T Consensus       181 i~~~~~~~~~----------~~~~~~~~~-~~-~~~-----------~~~~~~~~e~~~~l~~aG-f~~v~i~~~  231 (272)
T PRK11873        181 ISDVVLRGEL----------PEEIRNDAE-LY-AGC-----------VAGALQEEEYLAMLAEAG-FVDITIQPK  231 (272)
T ss_pred             EEEeeccCCC----------CHHHHHhHH-HH-hcc-----------ccCCCCHHHHHHHHHHCC-CCceEEEec
Confidence            8743321110          011221111 10 011           112457899999999999 887766543

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=98.11  E-value=0.00015  Score=65.66  Aligned_cols=29  Identities=17%  Similarity=0.335  Sum_probs=24.7

Q ss_pred             cCcccCCHHHHHHHHHhCCceEEeEEEEeC
Q 044174          233 LPIYSASSEEMVKLVDKNGHFSIKTVELTN  262 (332)
Q Consensus       233 ~P~y~ps~~E~~~~ie~~G~F~I~~le~~~  262 (332)
                      .+.++.+.+++.+++++.| |++...+.+.
T Consensus       188 ~~~~~~~~~~~~~~l~~~G-f~~~~~~~~~  216 (230)
T PRK07580        188 TRIYPHREKGIRRALAAAG-FKVVRTERIS  216 (230)
T ss_pred             CCccccCHHHHHHHHHHCC-CceEeeeecc
Confidence            4567789999999999999 9998887664

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=98.06  E-value=0.00065  Score=64.55  Aligned_cols=186  Identities=16%  Similarity=0.152  Sum_probs=108.2

Q ss_pred             CCCceEEEeecCCCCcchHHHHHHH-------------HHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCccc
Q 044174           27 ASNIIRLADLGCAVGSNTINAMQDV-------------LEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQ   93 (332)
Q Consensus        27 ~~~~~~iaD~GCs~G~ns~~~~~~i-------------i~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~   93 (332)
                      ..+-.+|+|+|||-|..++.+++.-             .+..+++..+.+.   .-.++|.+-|.+  ||+.        
T Consensus        70 L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl---~~~v~v~l~d~r--d~~e--------  136 (283)
T COG2230          70 LKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGL---EDNVEVRLQDYR--DFEE--------  136 (283)
T ss_pred             CCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCC---CcccEEEecccc--cccc--------
Confidence            4567999999999999999998653             2222333333331   225777777764  3433        


Q ss_pred             ccceeeecCCccccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHH
Q 044174           94 REYYSAGVPGSFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLN  173 (332)
Q Consensus        94 ~~~f~~~vpgSFy~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~  173 (332)
                                          .+|-+.|-=+++-                                    -..+.|..|++
T Consensus       137 --------------------~fDrIvSvgmfEh------------------------------------vg~~~~~~ff~  160 (283)
T COG2230         137 --------------------PFDRIVSVGMFEH------------------------------------VGKENYDDFFK  160 (283)
T ss_pred             --------------------ccceeeehhhHHH------------------------------------hCcccHHHHHH
Confidence                                2566666333322                                    22345677888


Q ss_pred             HHHHhhccCCeEEEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcC-cccCCHHHHHHHHHhCCc
Q 044174          174 ARAEEIVSGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLP-IYSASSEEMVKLVDKNGH  252 (332)
Q Consensus       174 ~Ra~EL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P-~y~ps~~E~~~~ie~~G~  252 (332)
                      .-.+-|+|||+|++--.+.......           ....|             ++.+-+| -+.||..++....++.| 
T Consensus       161 ~~~~~L~~~G~~llh~I~~~~~~~~-----------~~~~~-------------i~~yiFPgG~lPs~~~i~~~~~~~~-  215 (283)
T COG2230         161 KVYALLKPGGRMLLHSITGPDQEFR-----------RFPDF-------------IDKYIFPGGELPSISEILELASEAG-  215 (283)
T ss_pred             HHHhhcCCCceEEEEEecCCCcccc-----------cchHH-------------HHHhCCCCCcCCCHHHHHHHHHhcC-
Confidence            8899999999999998876653210           01111             1222334 36789999999999999 


Q ss_pred             eEEeEEEEeCCCCCCCCCccHHHHHHHHHHHHhhHHHhhhCHHHHHHHHHHHHHHHHhchhhh
Q 044174          253 FSIKTVELTNPTSWLEGPIDIKAWTMHVRAAMEAMFSKHFRIEIIDEMFNRLIRRLFEFSDKV  315 (332)
Q Consensus       253 F~I~~le~~~p~~~~~~~~~~~~~a~~iRa~~epll~~hfg~~i~delf~r~~~~v~~~l~~~  315 (332)
                      |.|...+.+.|+       +++++..|-..+-...=+  .+...-++++.+++..+...-..+
T Consensus       216 ~~v~~~~~~~~h-------Ya~Tl~~W~~~f~~~~~~--a~~~~~e~~~r~w~~yl~~~~~~F  269 (283)
T COG2230         216 FVVLDVESLRPH-------YARTLRLWRERFEANRDE--AIALYDERFYRMWELYLAACAAAF  269 (283)
T ss_pred             cEEehHhhhcHH-------HHHHHHHHHHHHHHHHHH--HHHHhhHHHHHHHHHHHHHHHHHh
Confidence            998777766332       344444443322221111  122223444455666666544443

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.04  E-value=3.8e-05  Score=77.75  Aligned_cols=77  Identities=16%  Similarity=0.195  Sum_probs=52.4

Q ss_pred             CcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEE
Q 044174          109 LFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVII  188 (332)
Q Consensus       109 lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~  188 (332)
                      .+|++++|+++|+.++||++.                                    .++..+|+.-++-|+|||+|++.
T Consensus        98 ~~~~~~fD~I~~~~~l~~l~~------------------------------------~~~~~~l~~~~r~Lk~gG~l~~~  141 (475)
T PLN02336         98 NISDGSVDLIFSNWLLMYLSD------------------------------------KEVENLAERMVKWLKVGGYIFFR  141 (475)
T ss_pred             CCCCCCEEEEehhhhHHhCCH------------------------------------HHHHHHHHHHHHhcCCCeEEEEE
Confidence            468899999999999999754                                    13445777777889999999885


Q ss_pred             ecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCC
Q 044174          189 MPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNG  251 (332)
Q Consensus       189 ~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G  251 (332)
                      =..-...                         |     .+....-|..+++..+++.++.++|
T Consensus       142 d~~~~~~-------------------------~-----~~~~~~~~~~~~~~~~~~~~f~~~~  174 (475)
T PLN02336        142 ESCFHQS-------------------------G-----DSKRKNNPTHYREPRFYTKVFKECH  174 (475)
T ss_pred             eccCCCC-------------------------C-----cccccCCCCeecChHHHHHHHHHhe
Confidence            3211110                         0     0000123556677889999998877

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=98.04  E-value=3.8e-05  Score=65.61  Aligned_cols=105  Identities=17%  Similarity=0.245  Sum_probs=60.0

Q ss_pred             CceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCC---CchHHHHhcCcccccceeeecCCcc
Q 044174           29 NIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTS---NDFNTLFTSLPQQREYYSAGVPGSF  105 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~---NDFn~lf~~l~~~~~~f~~~vpgSF  105 (332)
                      +..+|+|+|||+|..++.+...       .         .|..+++.-|.-.   +--+..++.+.-.   .+..+-+++
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~-------~---------~~~~~i~gvD~s~~~i~~a~~~~~~~~~~---ni~~~~~d~   63 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKE-------L---------NPGAKIIGVDISEEMIEYAKKRAKELGLD---NIEFIQGDI   63 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHH-------S---------TTTSEEEEEESSHHHHHHHHHHHHHTTST---TEEEEESBT
T ss_pred             CCCEEEEecCcCcHHHHHHHHh-------c---------CCCCEEEEEECcHHHHHHhhccccccccc---ccceEEeeh
Confidence            4689999999999999887641       0         1123344443322   1111111111111   111122333


Q ss_pred             cc--CCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 044174          106 HH--RLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGG  183 (332)
Q Consensus       106 y~--~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG  183 (332)
                      .+  +.++ +.+|+++++.++||+..                                      ...+|+.-.+-|++||
T Consensus        64 ~~l~~~~~-~~~D~I~~~~~l~~~~~--------------------------------------~~~~l~~~~~~lk~~G  104 (152)
T PF13847_consen   64 EDLPQELE-EKFDIIISNGVLHHFPD--------------------------------------PEKVLKNIIRLLKPGG  104 (152)
T ss_dssp             TCGCGCSS-TTEEEEEEESTGGGTSH--------------------------------------HHHHHHHHHHHEEEEE
T ss_pred             hccccccC-CCeeEEEEcCchhhccC--------------------------------------HHHHHHHHHHHcCCCc
Confidence            33  1144 79999999999998543                                      2345566667888999


Q ss_pred             eEEEEecc
Q 044174          184 MMVIIMPG  191 (332)
Q Consensus       184 ~mvl~~~g  191 (332)
                      ++++....
T Consensus       105 ~~i~~~~~  112 (152)
T PF13847_consen  105 ILIISDPN  112 (152)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEECC
Confidence            99998766

...

>PRK05785 hypothetical protein; Provisional

Probab=98.03  E-value=4e-05  Score=70.46  Aligned_cols=74  Identities=19%  Similarity=0.209  Sum_probs=47.4

Q ss_pred             ceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCccccCC
Q 044174           30 IIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHRL  109 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~~l  109 (332)
                      .-+|+|+|||+|..+..+.+..                  ..+|+--|+ +-+.-.+.+.    +.-+   +-|++....
T Consensus        52 ~~~VLDlGcGtG~~~~~l~~~~------------------~~~v~gvD~-S~~Ml~~a~~----~~~~---~~~d~~~lp  105 (226)
T PRK05785         52 PKKVLDVAAGKGELSYHFKKVF------------------KYYVVALDY-AENMLKMNLV----ADDK---VVGSFEALP  105 (226)
T ss_pred             CCeEEEEcCCCCHHHHHHHHhc------------------CCEEEEECC-CHHHHHHHHh----ccce---EEechhhCC
Confidence            5699999999999887664431                  013333442 2222222221    1112   346677778


Q ss_pred             cCCCceeEEEecCccccccC
Q 044174          110 FPQSSIHFAHCSYALHWLSK  129 (332)
Q Consensus       110 fP~~svd~~~S~~alHWLs~  129 (332)
                      ||++|+|+++|++++||+..
T Consensus       106 ~~d~sfD~v~~~~~l~~~~d  125 (226)
T PRK05785        106 FRDKSFDVVMSSFALHASDN  125 (226)
T ss_pred             CCCCCEEEEEecChhhccCC
Confidence            99999999999999999654

>PRK06922 hypothetical protein; Provisional

Probab=98.02  E-value=1.3e-05  Score=83.55  Aligned_cols=116  Identities=18%  Similarity=0.125  Sum_probs=66.0

Q ss_pred             ceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCcccc--
Q 044174           30 IIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHH--  107 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~--  107 (332)
                      ..+|+|+|||+|..+..+.+.                 .|..+|+--|+..+ .-...+........-+..+-|+.-+  
T Consensus       419 g~rVLDIGCGTG~ls~~LA~~-----------------~P~~kVtGIDIS~~-MLe~Ararl~~~g~~ie~I~gDa~dLp  480 (677)
T PRK06922        419 GDTIVDVGAGGGVMLDMIEEE-----------------TEDKRIYGIDISEN-VIDTLKKKKQNEGRSWNVIKGDAINLS  480 (677)
T ss_pred             CCEEEEeCCCCCHHHHHHHHh-----------------CCCCEEEEEECCHH-HHHHHHHHhhhcCCCeEEEEcchHhCc
Confidence            479999999999877655331                 12344455554432 1111111100000001112233322  


Q ss_pred             CCcCCCceeEEEecCccccc-cCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEE
Q 044174          108 RLFPQSSIHFAHCSYALHWL-SKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMV  186 (332)
Q Consensus       108 ~lfP~~svd~~~S~~alHWL-s~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mv  186 (332)
                      ..||++++|++++++++||+ +.+|..-.     .++                     ..|...+|+.-.+-|||||+++
T Consensus       481 ~~fedeSFDvVVsn~vLH~L~syIp~~g~-----~f~---------------------~edl~kiLreI~RVLKPGGrLI  534 (677)
T PRK06922        481 SSFEKESVDTIVYSSILHELFSYIEYEGK-----KFN---------------------HEVIKKGLQSAYEVLKPGGRII  534 (677)
T ss_pred             cccCCCCEEEEEEchHHHhhhhhcccccc-----ccc---------------------HHHHHHHHHHHHHHcCCCcEEE
Confidence            23788999999999999975 44552210     000                     2467778888888999999999


Q ss_pred             EEe
Q 044174          187 IIM  189 (332)
Q Consensus       187 l~~  189 (332)
                      +.-
T Consensus       535 I~D  537 (677)
T PRK06922        535 IRD  537 (677)
T ss_pred             EEe
Confidence            963

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=97.94  E-value=0.00011  Score=66.21  Aligned_cols=72  Identities=19%  Similarity=0.229  Sum_probs=45.4

Q ss_pred             CCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEE
Q 044174          108 RLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVI  187 (332)
Q Consensus       108 ~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl  187 (332)
                      +.+|++++|.++++++.+|......           +.+                   .+...||+.=++-|+|||++++
T Consensus       105 ~~~~~~~~D~V~~~~~~p~~~~~~~-----------~~~-------------------~~~~~~l~~i~~~LkpgG~l~i  154 (202)
T PRK00121        105 DMFPDGSLDRIYLNFPDPWPKKRHH-----------KRR-------------------LVQPEFLALYARKLKPGGEIHF  154 (202)
T ss_pred             HHcCccccceEEEECCCCCCCcccc-----------ccc-------------------cCCHHHHHHHHHHcCCCCEEEE
Confidence            4478889999999988888553110           000                   0123466666778889999998


Q ss_pred             EecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccc
Q 044174          188 IMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLIT  224 (332)
Q Consensus       188 ~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~  224 (332)
                      ....               .+.+...+..|...|+-.
T Consensus       155 ~~~~---------------~~~~~~~~~~~~~~g~~~  176 (202)
T PRK00121        155 ATDW---------------EGYAEYMLEVLSAEGGFL  176 (202)
T ss_pred             EcCC---------------HHHHHHHHHHHHhCcccc
Confidence            7632               124455666666666543

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.92  E-value=1.1e-05  Score=63.69  Aligned_cols=96  Identities=19%  Similarity=0.210  Sum_probs=43.8

Q ss_pred             EeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccc---cceeeecCCccccCCc
Q 044174           34 ADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQR---EYYSAGVPGSFHHRLF  110 (332)
Q Consensus        34 aD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~---~~f~~~vpgSFy~~lf  110 (332)
                      +|+|||+|..+..+++..                 |..++...|.-.+=-...=+.+....   ...+........... 
T Consensus         1 LdiGcG~G~~~~~l~~~~-----------------~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-   62 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEEL-----------------PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYD-   62 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC------------------EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CC-
T ss_pred             CEeCccChHHHHHHHHhC-----------------CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcc-
Confidence            599999999998776532                 34555555544322211001111110   112222222222222 


Q ss_pred             CCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeE
Q 044174          111 PQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMM  185 (332)
Q Consensus       111 P~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~m  185 (332)
                      +.+++|+|+++.++||+.                                      |+..+|+.-++-|+|||++
T Consensus        63 ~~~~fD~V~~~~vl~~l~--------------------------------------~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   63 PPESFDLVVASNVLHHLE--------------------------------------DIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             C----SEEEEE-TTS--S---------------------------------------HHHHHHHHTTT-TSS-EE
T ss_pred             cccccceehhhhhHhhhh--------------------------------------hHHHHHHHHHHHcCCCCCC
Confidence            227999999999999981                                      3345677777889999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=97.92  E-value=0.0002  Score=64.71  Aligned_cols=94  Identities=14%  Similarity=0.215  Sum_probs=54.5

Q ss_pred             CCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEecc
Q 044174          112 QSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIMPG  191 (332)
Q Consensus       112 ~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~~~g  191 (332)
                      ++++|+++++.++|+...                                      ...+|+.-.+-|+|||.+++....
T Consensus       110 ~~~~D~i~~~~~l~~~~~--------------------------------------~~~~l~~~~~~L~~gG~l~i~~~~  151 (224)
T TIGR01983       110 AKSFDVVTCMEVLEHVPD--------------------------------------PQAFIRACAQLLKPGGILFFSTIN  151 (224)
T ss_pred             CCCccEEEehhHHHhCCC--------------------------------------HHHHHHHHHHhcCCCcEEEEEecC
Confidence            478999999998888532                                      123566666778899999877543


Q ss_pred             cCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEE
Q 044174          192 IPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVEL  260 (332)
Q Consensus       192 r~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~  260 (332)
                      +..        .......+.   .++ ..+.....    ......+.+.+++.+.+++.| |+|..+.-
T Consensus       152 ~~~--------~~~~~~~~~---~~~-~~~~~~~~----~~~~~~~~~~~~l~~~l~~~G-~~i~~~~~  203 (224)
T TIGR01983       152 RTP--------KSYLLAIVG---AEY-ILRIVPKG----THDWEKFIKPSELTSWLESAG-LRVKDVKG  203 (224)
T ss_pred             CCc--------hHHHHHHHh---hhh-hhhcCCCC----cCChhhcCCHHHHHHHHHHcC-Ceeeeeee
Confidence            211        010111110   011 11111110    001113558899999999999 99988773

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=97.87  E-value=0.00011  Score=69.22  Aligned_cols=117  Identities=18%  Similarity=0.367  Sum_probs=64.5

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHH---------HHhcCcccc--cc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNT---------LFTSLPQQR--EY   96 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~---------lf~~l~~~~--~~   96 (332)
                      ..+++|.|+|||+|--+-.++-.+.+....    .    ..+.++|+-.|.-..==..         -++.+|...  .|
T Consensus        98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~----~----~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~y  169 (264)
T smart00138       98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPK----A----REPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARY  169 (264)
T ss_pred             CCCEEEEeccccCChHHHHHHHHHHHHhhh----c----CCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhh
Confidence            456999999999997644333222222111    0    1235677777764311100         011222110  23


Q ss_pred             ee----------------eecCCccccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHH
Q 044174           97 YS----------------AGVPGSFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAY  160 (332)
Q Consensus        97 f~----------------~~vpgSFy~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay  160 (332)
                      |.                .-..+..-+..+|.+++|+|+|.++|||++. |                             
T Consensus       170 f~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~-~-----------------------------  219 (264)
T smart00138      170 FSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDE-P-----------------------------  219 (264)
T ss_pred             EEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCH-H-----------------------------
Confidence            32                1122333344457899999999999999753 1                             


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCeEEEE
Q 044174          161 ASQFAKDMENFLNARAEEIVSGGMMVII  188 (332)
Q Consensus       161 ~~q~~~d~~~fL~~Ra~EL~pGG~mvl~  188 (332)
                            +....|+.=++-|+|||.|++.
T Consensus       220 ------~~~~~l~~l~~~L~pGG~L~lg  241 (264)
T smart00138      220 ------TQRKLLNRFAEALKPGGYLFLG  241 (264)
T ss_pred             ------HHHHHHHHHHHHhCCCeEEEEE
Confidence                  1223455555778899999873

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=97.87  E-value=0.00052  Score=62.60  Aligned_cols=94  Identities=12%  Similarity=0.204  Sum_probs=55.5

Q ss_pred             CCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEec
Q 044174          111 PQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIMP  190 (332)
Q Consensus       111 P~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~~~  190 (332)
                      +.+.+|+++++..++++..                                      ...+|+.-.+-|+|||+|++...
T Consensus       111 ~~~~fD~Ii~~~~l~~~~~--------------------------------------~~~~l~~~~~~L~~gG~l~v~~~  152 (233)
T PRK05134        111 HPGQFDVVTCMEMLEHVPD--------------------------------------PASFVRACAKLVKPGGLVFFSTL  152 (233)
T ss_pred             cCCCccEEEEhhHhhccCC--------------------------------------HHHHHHHHHHHcCCCcEEEEEec
Confidence            5578999999888887432                                      11345555667789999998876


Q ss_pred             ccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEE
Q 044174          191 GIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVE  259 (332)
Q Consensus       191 gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le  259 (332)
                      ++..        .........   ...+..++ ..    .......+.+.+|+.+++++.| |++....
T Consensus       153 ~~~~--------~~~~~~~~~---~~~~~~~~-~~----~~~~~~~~~~~~~~~~~l~~~G-f~~v~~~  204 (233)
T PRK05134        153 NRNL--------KSYLLAIVG---AEYVLRML-PK----GTHDYKKFIKPSELAAWLRQAG-LEVQDIT  204 (233)
T ss_pred             CCCh--------HHHHHHHhh---HHHHhhhc-Cc----ccCchhhcCCHHHHHHHHHHCC-CeEeeee
Confidence            5321        011111111   11111111 10    0111224678999999999999 9988776

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.86  E-value=0.00013  Score=69.81  Aligned_cols=145  Identities=16%  Similarity=0.196  Sum_probs=91.3

Q ss_pred             ceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCccc----ccceeeecCCcc
Q 044174           30 IIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQ----REYYSAGVPGSF  105 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~----~~~f~~~vpgSF  105 (332)
                      .-+|+|+||+.|.-++.+...            +     +. .|+--| |+-.|...|+.+...    ..+|.  +|-..
T Consensus       116 gk~VLDIGC~nGY~~frM~~~------------G-----A~-~ViGiD-P~~lf~~QF~~i~~~lg~~~~~~~--lplgv  174 (315)
T PF08003_consen  116 GKRVLDIGCNNGYYSFRMLGR------------G-----AK-SVIGID-PSPLFYLQFEAIKHFLGQDPPVFE--LPLGV  174 (315)
T ss_pred             CCEEEEecCCCcHHHHHHhhc------------C-----CC-EEEEEC-CChHHHHHHHHHHHHhCCCccEEE--cCcch
Confidence            369999999999998876421            1     11 233333 555667666665432    22332  34444


Q ss_pred             ccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCC-CHHHHHHHHHHHHHHHHHHHHHHHHhhccCCe
Q 044174          106 HHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNA-AEEVVNAYASQFAKDMENFLNARAEEIVSGGM  184 (332)
Q Consensus       106 y~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~-~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~  184 (332)
                      ++-.. .+++|.|||--.|                        +... |-.               .|+.=.+-|++||.
T Consensus       175 E~Lp~-~~~FDtVF~MGVL------------------------YHrr~Pl~---------------~L~~Lk~~L~~gGe  214 (315)
T PF08003_consen  175 EDLPN-LGAFDTVFSMGVL------------------------YHRRSPLD---------------HLKQLKDSLRPGGE  214 (315)
T ss_pred             hhccc-cCCcCEEEEeeeh------------------------hccCCHHH---------------HHHHHHHhhCCCCE
Confidence            44444 7899999993322                        2222 212               23333467899999


Q ss_pred             EEEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEE
Q 044174          185 MVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTV  258 (332)
Q Consensus       185 mvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~l  258 (332)
                      ||++.+..+.+..                      .-+++++....++.=||-||..-++..++++| |+-.++
T Consensus       215 LvLETlvi~g~~~----------------------~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~g-F~~v~~  265 (315)
T PF08003_consen  215 LVLETLVIDGDEN----------------------TVLVPEDRYAKMRNVWFIPSVAALKNWLERAG-FKDVRC  265 (315)
T ss_pred             EEEEEeeecCCCc----------------------eEEccCCcccCCCceEEeCCHHHHHHHHHHcC-CceEEE
Confidence            9999776543221                      12356666778888899999999999999999 864333

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=97.83  E-value=0.00011  Score=65.44  Aligned_cols=19  Identities=21%  Similarity=0.263  Sum_probs=16.6

Q ss_pred             ceEEEeecCCCCcchHHHH
Q 044174           30 IIRLADLGCAVGSNTINAM   48 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~   48 (332)
                      ..+|+|+|||+|..++.+.
T Consensus        43 ~~~vLDiGcGtG~~s~~la   61 (181)
T TIGR00138        43 GKKVIDIGSGAGFPGIPLA   61 (181)
T ss_pred             CCeEEEecCCCCccHHHHH
Confidence            5799999999999988764

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=97.82  E-value=4.8e-05  Score=69.85  Aligned_cols=141  Identities=23%  Similarity=0.439  Sum_probs=90.6

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHH---------HhhhhcCCCCCCCceE--EEecCCCCCchHHHHhcCcccccc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIK---------NKCHSQCPSSKLPEFQ--VFFNDKTSNDFNTLFTSLPQQREY   96 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~---------~~~~~~~~~~~~~~~~--v~~nDlp~NDFn~lf~~l~~~~~~   96 (332)
                      ......+|+|||-|.-+-.+...-++.+.         +.|+.    ++.|++.  -+.-|-..-               
T Consensus        71 k~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~----~qdp~i~~~~~v~DEE~L---------------  131 (325)
T KOG2940|consen   71 KSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRD----AQDPSIETSYFVGDEEFL---------------  131 (325)
T ss_pred             hhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhc----cCCCceEEEEEecchhcc---------------
Confidence            44568999999999998887655444331         11221    1223322  222222222               


Q ss_pred             eeeecCCccccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 044174           97 YSAGVPGSFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARA  176 (332)
Q Consensus        97 f~~~vpgSFy~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra  176 (332)
                                  -|-+||+|++.||.++||....|....                                      .-.
T Consensus       132 ------------df~ens~DLiisSlslHW~NdLPg~m~--------------------------------------~ck  161 (325)
T KOG2940|consen  132 ------------DFKENSVDLIISSLSLHWTNDLPGSMI--------------------------------------QCK  161 (325)
T ss_pred             ------------cccccchhhhhhhhhhhhhccCchHHH--------------------------------------HHH
Confidence                        266799999999999999999885432                                      112


Q ss_pred             HhhccCCeEEEEecccCCCCCCCCcchhHHHHH-HHHHHHHHHHhhccchhhhcccCcCcccC--CHHHHHHHHHhCCce
Q 044174          177 EEIVSGGMMVIIMPGIPYGMPYSHLTNGVMYDL-MATIFMELANEQLITEAELDSFNLPIYSA--SSEEMVKLVDKNGHF  253 (332)
Q Consensus       177 ~EL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~-l~~al~~mv~eGli~~e~~d~fn~P~y~p--s~~E~~~~ie~~G~F  253 (332)
                      ..|||.|.|+..|.|-+.           ++++ .+--|.+|-.+|-|+         |..-|  ...++-.++...| |
T Consensus       162 ~~lKPDg~FiasmlggdT-----------LyELR~slqLAelER~GGiS---------phiSPf~qvrDiG~LL~rAG-F  220 (325)
T KOG2940|consen  162 LALKPDGLFIASMLGGDT-----------LYELRCSLQLAELEREGGIS---------PHISPFTQVRDIGNLLTRAG-F  220 (325)
T ss_pred             HhcCCCccchhHHhcccc-----------HHHHHHHhhHHHHHhccCCC---------CCcChhhhhhhhhhHHhhcC-c
Confidence            578899999999998432           3332 344566888888876         43333  4567778899999 7


Q ss_pred             EEeEE
Q 044174          254 SIKTV  258 (332)
Q Consensus       254 ~I~~l  258 (332)
                      ..-.+
T Consensus       221 ~m~tv  225 (325)
T KOG2940|consen  221 SMLTV  225 (325)
T ss_pred             cccee
Confidence            65333

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=97.81  E-value=0.00012  Score=68.21  Aligned_cols=172  Identities=14%  Similarity=0.174  Sum_probs=101.4

Q ss_pred             CCCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcc----cccce----e
Q 044174           27 ASNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQ----QREYY----S   98 (332)
Q Consensus        27 ~~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~----~~~~f----~   98 (332)
                      ....++++|++||+|-.|+.+++.+-+.-.           ..+-.|...     |+|.=--....    ..+++    +
T Consensus        98 p~~~m~~lDvaGGTGDiaFril~~v~s~~~-----------~~~~~V~v~-----Dinp~mL~vgkqRa~~~~l~~~~~~  161 (296)
T KOG1540|consen   98 PGKGMKVLDVAGGTGDIAFRILRHVKSQFG-----------DRESKVTVL-----DINPHMLAVGKQRAKKRPLKASSRV  161 (296)
T ss_pred             CCCCCeEEEecCCcchhHHHHHHhhccccC-----------CCCceEEEE-----eCCHHHHHHHHHHHhhcCCCcCCce
Confidence            355699999999999999998765433211           112233333     44442222211    11222    3


Q ss_pred             eecCCccccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044174           99 AGVPGSFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEE  178 (332)
Q Consensus        99 ~~vpgSFy~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~E  178 (332)
                      .-+.|.=-...||++++|...+++.+.-..+++.                      ...+||                +-
T Consensus       162 ~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k----------------------~l~EAY----------------RV  203 (296)
T KOG1540|consen  162 EWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQK----------------------ALREAY----------------RV  203 (296)
T ss_pred             EEEeCCcccCCCCCCcceeEEEecceecCCCHHH----------------------HHHHHH----------------Hh
Confidence            4466777888899999999999887765333332                      233444                57


Q ss_pred             hccCCeEEEEecccCCCCCCCCc---chhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEE
Q 044174          179 IVSGGMMVIIMPGIPYGMPYSHL---TNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSI  255 (332)
Q Consensus       179 L~pGG~mvl~~~gr~~~~~~~~~---~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I  255 (332)
                      |||||+|.+.-...-+..+....   +.-.+.-.+.+.+....+.+..=-|-+.      =||+.+|+...+|+.| |..
T Consensus       204 LKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~------rfp~qe~f~~miedaG-F~~  276 (296)
T KOG1540|consen  204 LKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIR------RFPPQEEFASMIEDAG-FSS  276 (296)
T ss_pred             cCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhh------cCCCHHHHHHHHHHcC-Ccc
Confidence            88999999887776553321100   1111223445555544444332111111      3688999999999999 887


Q ss_pred             eE-EE
Q 044174          256 KT-VE  259 (332)
Q Consensus       256 ~~-le  259 (332)
                      .. .|
T Consensus       277 ~~~ye  281 (296)
T KOG1540|consen  277 VNGYE  281 (296)
T ss_pred             ccccc
Confidence            65 44

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=97.78  E-value=0.00016  Score=67.61  Aligned_cols=141  Identities=18%  Similarity=0.263  Sum_probs=91.2

Q ss_pred             eEEEeecCCCCcchHHHH------------HHHHHHHHHhhhhcCCCCCCCce-----EEEecCCCCCchHHHHhcCccc
Q 044174           31 IRLADLGCAVGSNTINAM------------QDVLEVIKNKCHSQCPSSKLPEF-----QVFFNDKTSNDFNTLFTSLPQQ   93 (332)
Q Consensus        31 ~~iaD~GCs~G~ns~~~~------------~~ii~~i~~~~~~~~~~~~~~~~-----~v~~nDlp~NDFn~lf~~l~~~   93 (332)
                      .+|+|+|||.|--|..++            +..|+.-+++ .++.    |+.-     .+-+.|.-.+++..        
T Consensus        91 ~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h-~~~d----P~~~~~~~y~l~~~~~~~E~~~~--------  157 (282)
T KOG1270|consen   91 MKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEH-KKMD----PVLEGAIAYRLEYEDTDVEGLTG--------  157 (282)
T ss_pred             ceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHh-hhcC----chhccccceeeehhhcchhhccc--------
Confidence            779999999999998887            5566666655 2222    2211     23344544444433        


Q ss_pred             ccceeeecCCccccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHH
Q 044174           94 REYYSAGVPGSFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLN  173 (332)
Q Consensus        94 ~~~f~~~vpgSFy~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~  173 (332)
                                          .+|.|.|+-.+|-                                      -+|...||.
T Consensus       158 --------------------~fDaVvcsevleH--------------------------------------V~dp~~~l~  179 (282)
T KOG1270|consen  158 --------------------KFDAVVCSEVLEH--------------------------------------VKDPQEFLN  179 (282)
T ss_pred             --------------------ccceeeeHHHHHH--------------------------------------HhCHHHHHH
Confidence                                3788888655544                                      146778999


Q ss_pred             HHHHhhccCCeEEEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCce
Q 044174          174 ARAEEIVSGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHF  253 (332)
Q Consensus       174 ~Ra~EL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F  253 (332)
                      +=++-|+|||+++++-.-|.--.     ..+.+  .+.+.+...|-.|.-         .+--|++++|+..+++.++ +
T Consensus       180 ~l~~~lkP~G~lfittinrt~lS-----~~~~i--~~~E~vl~ivp~Gth---------~~ekfi~p~e~~~~l~~~~-~  242 (282)
T KOG1270|consen  180 CLSALLKPNGRLFITTINRTILS-----FAGTI--FLAEIVLRIVPKGTH---------TWEKFINPEELTSILNANG-A  242 (282)
T ss_pred             HHHHHhCCCCceEeeehhhhHHH-----hhccc--cHHHHHHHhcCCCCc---------CHHHcCCHHHHHHHHHhcC-c
Confidence            99999999999999987664211     11111  122222224444532         4556789999999999998 8


Q ss_pred             EEeEEE
Q 044174          254 SIKTVE  259 (332)
Q Consensus       254 ~I~~le  259 (332)
                      .|+.+-
T Consensus       243 ~v~~v~  248 (282)
T KOG1270|consen  243 QVNDVV  248 (282)
T ss_pred             chhhhh
Confidence            887766

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=97.77  E-value=0.00011  Score=58.31  Aligned_cols=18  Identities=33%  Similarity=0.597  Sum_probs=14.2

Q ss_pred             EEeecCCCCcchHHHHHH
Q 044174           33 LADLGCAVGSNTINAMQD   50 (332)
Q Consensus        33 iaD~GCs~G~ns~~~~~~   50 (332)
                      |+|+|||+|.++..+...
T Consensus         1 ILDlgcG~G~~~~~l~~~   18 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARR   18 (101)
T ss_dssp             -EEET-TTSHHHHHHHHH
T ss_pred             CEEeecCCcHHHHHHHHH
Confidence            799999999999888765

>TIGR03438 probable methyltransferase

Probab=97.73  E-value=0.00028  Score=67.58  Aligned_cols=128  Identities=13%  Similarity=0.073  Sum_probs=73.6

Q ss_pred             HHHHHHHHHhhhhcccCCCCCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHH-
Q 044174            9 EKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLF-   87 (332)
Q Consensus         9 ~~l~~ai~~~~~~~~~~~~~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf-   87 (332)
                      .+|++...++....     +...+|+|+|||+|.-|..+++....                ..+++--|+.. ++-... 
T Consensus        48 ~il~~~~~~ia~~~-----~~~~~iLELGcGtG~~t~~Ll~~l~~----------------~~~~~~iDiS~-~mL~~a~  105 (301)
T TIGR03438        48 AILERHADEIAAAT-----GAGCELVELGSGSSRKTRLLLDALRQ----------------PARYVPIDISA-DALKESA  105 (301)
T ss_pred             HHHHHHHHHHHHhh-----CCCCeEEecCCCcchhHHHHHHhhcc----------------CCeEEEEECCH-HHHHHHH
Confidence            45666666555432     33468999999999999988765421                12233333322 111111 


Q ss_pred             hcCcc-cccceeeecCCccccCC-cCCC----ceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHH
Q 044174           88 TSLPQ-QREYYSAGVPGSFHHRL-FPQS----SIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYA  161 (332)
Q Consensus        88 ~~l~~-~~~~f~~~vpgSFy~~l-fP~~----svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~  161 (332)
                      +.+.. ....-+.++-|+|.+.+ +|..    ...++++..++|+++.                                
T Consensus       106 ~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~--------------------------------  153 (301)
T TIGR03438       106 AALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTP--------------------------------  153 (301)
T ss_pred             HHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEEecccccCCCH--------------------------------
Confidence            11211 11233445556666532 3332    4567777778888652                                


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCeEEEEecccCC
Q 044174          162 SQFAKDMENFLNARAEEIVSGGMMVIIMPGIPY  194 (332)
Q Consensus       162 ~q~~~d~~~fL~~Ra~EL~pGG~mvl~~~gr~~  194 (332)
                          .|...||+.-++-|+|||+|++.+-...+
T Consensus       154 ----~e~~~~L~~i~~~L~pgG~~lig~d~~~~  182 (301)
T TIGR03438       154 ----EEAVAFLRRIRQLLGPGGGLLIGVDLVKD  182 (301)
T ss_pred             ----HHHHHHHHHHHHhcCCCCEEEEeccCCCC
Confidence                23446788888889999999987755443

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=97.72  E-value=0.00026  Score=64.36  Aligned_cols=108  Identities=18%  Similarity=0.213  Sum_probs=62.1

Q ss_pred             ceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCccccC-
Q 044174           30 IIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHR-  108 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~~-  108 (332)
                      .-+|+|+|||+|.-|..+++..                .+.-.|+--|+-.  .+    .++.     +..+-|++.+. 
T Consensus        52 ~~~VLDlG~GtG~~t~~l~~~~----------------~~~~~V~aVDi~~--~~----~~~~-----v~~i~~D~~~~~  104 (209)
T PRK11188         52 GMTVVDLGAAPGGWSQYAVTQI----------------GDKGRVIACDILP--MD----PIVG-----VDFLQGDFRDEL  104 (209)
T ss_pred             CCEEEEEcccCCHHHHHHHHHc----------------CCCceEEEEeccc--cc----CCCC-----cEEEecCCCChH
Confidence            4589999999999887765421                1123444444422  11    1111     22344455553 


Q ss_pred             -------CcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 044174          109 -------LFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVS  181 (332)
Q Consensus       109 -------lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~p  181 (332)
                             -++++++|+++|+.+.||... |.  .|                   .  +  .+ .......|+.=.+-|+|
T Consensus       105 ~~~~i~~~~~~~~~D~V~S~~~~~~~g~-~~--~d-------------------~--~--~~-~~~~~~~L~~~~~~Lkp  157 (209)
T PRK11188        105 VLKALLERVGDSKVQVVMSDMAPNMSGT-PA--VD-------------------I--P--RA-MYLVELALDMCRDVLAP  157 (209)
T ss_pred             HHHHHHHHhCCCCCCEEecCCCCccCCC-hH--HH-------------------H--H--HH-HHHHHHHHHHHHHHcCC
Confidence                   257789999999999999332 11  00                   0  0  00 01123566666677889


Q ss_pred             CCeEEEEecc
Q 044174          182 GGMMVIIMPG  191 (332)
Q Consensus       182 GG~mvl~~~g  191 (332)
                      ||+|++....
T Consensus       158 GG~~vi~~~~  167 (209)
T PRK11188        158 GGSFVVKVFQ  167 (209)
T ss_pred             CCEEEEEEec
Confidence            9999996544

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=97.69  E-value=0.0005  Score=63.60  Aligned_cols=180  Identities=17%  Similarity=0.208  Sum_probs=100.0

Q ss_pred             hHHHHHHHHHHhhhhcccCCCCCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHH
Q 044174            7 VKEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTL   86 (332)
Q Consensus         7 ~~~~l~~ai~~~~~~~~~~~~~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~l   86 (332)
                      -+.||.....++.....    ....+|..+|||.|...+.+++.               .+.+.+.||..|.-.|-=. +
T Consensus        53 dR~wL~~Efpel~~~~~----~~~~~ilEvGCGvGNtvfPll~~---------------~~n~~l~v~acDfsp~Ai~-~  112 (264)
T KOG2361|consen   53 DRNWLLREFPELLPVDE----KSAETILEVGCGVGNTVFPLLKT---------------SPNNRLKVYACDFSPRAIE-L  112 (264)
T ss_pred             hhHHHHHhhHHhhCccc----cChhhheeeccCCCcccchhhhc---------------CCCCCeEEEEcCCChHHHH-H
Confidence            45688888877776542    22339999999998777665431               1245588888876554322 2


Q ss_pred             HhcCcccc----cceeeecCCccccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHH
Q 044174           87 FTSLPQQR----EYYSAGVPGSFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYAS  162 (332)
Q Consensus        87 f~~l~~~~----~~f~~~vpgSFy~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~  162 (332)
                      .+.-....    ..|+.-+-++=-...++.+|+|++..-+.   ||-+|+                      +-.    .
T Consensus       113 vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFv---LSAi~p----------------------ek~----~  163 (264)
T KOG2361|consen  113 VKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFV---LSAIHP----------------------EKM----Q  163 (264)
T ss_pred             HHhccccchhhhcccceeccchhccCCCCcCccceEEEEEE---EeccCh----------------------HHH----H
Confidence            22222111    22333333332445556667776655222   233332                      221    1


Q ss_pred             HHHHHHHHHHHHHHHhhccCCeEEEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhh-hcccCcCcccCCHH
Q 044174          163 QFAKDMENFLNARAEEIVSGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAE-LDSFNLPIYSASSE  241 (332)
Q Consensus       163 q~~~d~~~fL~~Ra~EL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~-~d~fn~P~y~ps~~  241 (332)
                      ++.+.+.       +-|||||.+++-=-|+.+-.            .+.--     ++-.|++.. +..=--+.||-+.+
T Consensus       164 ~a~~nl~-------~llKPGG~llfrDYg~~Dla------------qlRF~-----~~~~i~~nfYVRgDGT~~YfF~~e  219 (264)
T KOG2361|consen  164 SVIKNLR-------TLLKPGGSLLFRDYGRYDLA------------QLRFK-----KGQCISENFYVRGDGTRAYFFTEE  219 (264)
T ss_pred             HHHHHHH-------HHhCCCcEEEEeecccchHH------------HHhcc-----CCceeecceEEccCCceeeeccHH
Confidence            2333333       45569999999887876521            11100     122222111 11112478999999


Q ss_pred             HHHHHHHhCCceEEeEEEE
Q 044174          242 EMVKLVDKNGHFSIKTVEL  260 (332)
Q Consensus       242 E~~~~ie~~G~F~I~~le~  260 (332)
                      |+++++.+.| |..++++.
T Consensus       220 eL~~~f~~ag-f~~~~~~~  237 (264)
T KOG2361|consen  220 ELDELFTKAG-FEEVQLEV  237 (264)
T ss_pred             HHHHHHHhcc-cchhcccc
Confidence            9999999999 88777764

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=97.64  E-value=0.00045  Score=61.89  Aligned_cols=42  Identities=19%  Similarity=0.149  Sum_probs=26.5

Q ss_pred             hhHHHHHHHHHHhhhhcccCCCCCceEEEeecCCCCcchHHHHH
Q 044174            6 AVKEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus         6 ~~~~~l~~ai~~~~~~~~~~~~~~~~~iaD~GCs~G~ns~~~~~   49 (332)
                      ...++.++.+-+......+  .+...+|+|+|||+|..++.+..
T Consensus        24 ~~~~~~~~~~~d~l~l~~~--l~~g~~VLDiGcGtG~~al~la~   65 (187)
T PRK00107         24 DPEELWERHILDSLAIAPY--LPGGERVLDVGSGAGFPGIPLAI   65 (187)
T ss_pred             CHHHHHHHHHHHHHHHHhh--cCCCCeEEEEcCCCCHHHHHHHH
Confidence            4455555555433333221  23468999999999998887753

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=97.64  E-value=0.0024  Score=61.74  Aligned_cols=27  Identities=19%  Similarity=0.420  Sum_probs=23.1

Q ss_pred             cccCCHHHHHHHHHhCCceEEeEEEEeC
Q 044174          235 IYSASSEEMVKLVDKNGHFSIKTVELTN  262 (332)
Q Consensus       235 ~y~ps~~E~~~~ie~~G~F~I~~le~~~  262 (332)
                      .|+.+.+|++.++++.| |+|...+...
T Consensus       275 ~y~~s~eel~~lL~~AG-f~v~~~~~~~  301 (315)
T PLN02585        275 AYLHAEADVERALKKAG-WKVARREMTA  301 (315)
T ss_pred             eeeCCHHHHHHHHHHCC-CEEEEEEEee
Confidence            46779999999999999 9998877553

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=97.62  E-value=0.00096  Score=61.77  Aligned_cols=46  Identities=20%  Similarity=0.324  Sum_probs=37.3

Q ss_pred             CcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEE
Q 044174          109 LFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVII  188 (332)
Q Consensus       109 lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~  188 (332)
                      +=+++|||+|.+.-|+||                                       =|+.+|++.-++-|++.|.+++.
T Consensus        95 ~g~e~SVDlI~~Aqa~HW---------------------------------------Fdle~fy~~~~rvLRk~Gg~iav  135 (261)
T KOG3010|consen   95 LGGEESVDLITAAQAVHW---------------------------------------FDLERFYKEAYRVLRKDGGLIAV  135 (261)
T ss_pred             cCCCcceeeehhhhhHHh---------------------------------------hchHHHHHHHHHHcCCCCCEEEE
Confidence            335999999999999999                                       27778899999999998877666


Q ss_pred             ecccC
Q 044174          189 MPGIP  193 (332)
Q Consensus       189 ~~gr~  193 (332)
                      ..=++
T Consensus       136 W~Y~d  140 (261)
T KOG3010|consen  136 WNYND  140 (261)
T ss_pred             EEccC
Confidence            65443

>PRK04266 fibrillarin; Provisional

Probab=97.60  E-value=0.0012  Score=60.98  Aligned_cols=21  Identities=19%  Similarity=0.242  Sum_probs=17.6

Q ss_pred             CceEEEeecCCCCcchHHHHH
Q 044174           29 NIIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~   49 (332)
                      +..+|+|+|||+|..|+.+.+
T Consensus        72 ~g~~VlD~G~G~G~~~~~la~   92 (226)
T PRK04266         72 KGSKVLYLGAASGTTVSHVSD   92 (226)
T ss_pred             CCCEEEEEccCCCHHHHHHHH
Confidence            347999999999999887754

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=97.58  E-value=0.00047  Score=61.00  Aligned_cols=21  Identities=33%  Similarity=0.452  Sum_probs=17.5

Q ss_pred             CceEEEeecCCCCcchHHHHH
Q 044174           29 NIIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~   49 (332)
                      ...+|+|+|||+|..++.++.
T Consensus        31 ~~~~vLDiG~G~G~~~~~la~   51 (187)
T PRK08287         31 RAKHLIDVGAGTGSVSIEAAL   51 (187)
T ss_pred             CCCEEEEECCcCCHHHHHHHH
Confidence            356899999999999987753

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=97.58  E-value=0.00045  Score=62.22  Aligned_cols=93  Identities=19%  Similarity=0.346  Sum_probs=65.8

Q ss_pred             CCceEEEeecCCCCcchHHHH------------HHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCccccc
Q 044174           28 SNIIRLADLGCAVGSNTINAM------------QDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQRE   95 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~------------~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~   95 (332)
                      +.--++.|+|||.|..|..++            ...|+.-++++..      .|.+++..-|+|.               
T Consensus        42 ~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~------~~~V~~~~~dvp~---------------  100 (201)
T PF05401_consen   42 RRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAG------LPHVEWIQADVPE---------------  100 (201)
T ss_dssp             SSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-------SSEEEEES-TTT---------------
T ss_pred             cccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCC------CCCeEEEECcCCC---------------
Confidence            556889999999999999887            4556666665532      4678877777764               


Q ss_pred             ceeeecCCccccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHH
Q 044174           96 YYSAGVPGSFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNAR  175 (332)
Q Consensus        96 ~f~~~vpgSFy~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~R  175 (332)
                                   ..|.+++|+++.+-.+++|+..                                   .|+..++..-
T Consensus       101 -------------~~P~~~FDLIV~SEVlYYL~~~-----------------------------------~~L~~~l~~l  132 (201)
T PF05401_consen  101 -------------FWPEGRFDLIVLSEVLYYLDDA-----------------------------------EDLRAALDRL  132 (201)
T ss_dssp             ----------------SS-EEEEEEES-GGGSSSH-----------------------------------HHHHHHHHHH
T ss_pred             -------------CCCCCCeeEEEEehHhHcCCCH-----------------------------------HHHHHHHHHH
Confidence                         1388899999999999998751                                   3566777888


Q ss_pred             HHhhccCCeEEEEe
Q 044174          176 AEEIVSGGMMVIIM  189 (332)
Q Consensus       176 a~EL~pGG~mvl~~  189 (332)
                      .+-|.|||.||+.-
T Consensus       133 ~~~L~pgG~LV~g~  146 (201)
T PF05401_consen  133 VAALAPGGHLVFGH  146 (201)
T ss_dssp             HHTEEEEEEEEEEE
T ss_pred             HHHhCCCCEEEEEE
Confidence            88999999999964

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=97.57  E-value=0.00032  Score=65.96  Aligned_cols=76  Identities=21%  Similarity=0.234  Sum_probs=42.0

Q ss_pred             CceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCccccC
Q 044174           29 NIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHR  108 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~~  108 (332)
                      ...+|+|+|||+|..+..+.+..        ..      ....+|+-.|+-.+=-...-+..+   +  +.-+-++..+-
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~--------~~------~~~~~v~giD~s~~~l~~A~~~~~---~--~~~~~~d~~~l  145 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADAL--------PE------ITTMQLFGLDISKVAIKYAAKRYP---Q--VTFCVASSHRL  145 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhc--------cc------ccCCeEEEECCCHHHHHHHHHhCC---C--CeEEEeecccC
Confidence            34689999999999887765421        00      011355666653221111111111   1  11233455556


Q ss_pred             CcCCCceeEEEecCc
Q 044174          109 LFPQSSIHFAHCSYA  123 (332)
Q Consensus       109 lfP~~svd~~~S~~a  123 (332)
                      .||++++|+++|..+
T Consensus       146 p~~~~sfD~I~~~~~  160 (272)
T PRK11088        146 PFADQSLDAIIRIYA  160 (272)
T ss_pred             CCcCCceeEEEEecC
Confidence            688999999998653

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=97.56  E-value=0.00056  Score=63.80  Aligned_cols=116  Identities=17%  Similarity=0.220  Sum_probs=75.1

Q ss_pred             CCCceEEEeecCCCCcchHHHHHH--------------HHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcc
Q 044174           27 ASNIIRLADLGCAVGSNTINAMQD--------------VLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQ   92 (332)
Q Consensus        27 ~~~~~~iaD~GCs~G~ns~~~~~~--------------ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~   92 (332)
                      .+..-+|+|+|||.|.-++.+.+.              ..+..++.... +  .-...++|+..|     ++...+.   
T Consensus        42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~l-n--~l~~ri~v~~~D-----i~~~~~~---  110 (248)
T COG4123          42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVAL-N--PLEERIQVIEAD-----IKEFLKA---  110 (248)
T ss_pred             cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHh-C--cchhceeEehhh-----HHHhhhc---
Confidence            455899999999999999999855              22222222211 1  123457766664     4443322   


Q ss_pred             cccceeeecCCccccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHH
Q 044174           93 QREYYSAGVPGSFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFL  172 (332)
Q Consensus        93 ~~~~f~~~vpgSFy~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL  172 (332)
                                       .+..++|+|+|         .|+-         ++-...  ..+.+.++-...+..-++..++
T Consensus       111 -----------------~~~~~fD~Ii~---------NPPy---------f~~~~~--~~~~~~~~~Ar~e~~~~le~~i  153 (248)
T COG4123         111 -----------------LVFASFDLIIC---------NPPY---------FKQGSR--LNENPLRAIARHEITLDLEDLI  153 (248)
T ss_pred             -----------------ccccccCEEEe---------CCCC---------CCCccc--cCcChhhhhhhhhhcCCHHHHH
Confidence                             23448999999         3433         332222  2244555556667778899999


Q ss_pred             HHHHHhhccCCeEEEEec
Q 044174          173 NARAEEIVSGGMMVIIMP  190 (332)
Q Consensus       173 ~~Ra~EL~pGG~mvl~~~  190 (332)
                      +.=++-||+||++.++..
T Consensus       154 ~~a~~~lk~~G~l~~V~r  171 (248)
T COG4123         154 RAAAKLLKPGGRLAFVHR  171 (248)
T ss_pred             HHHHHHccCCCEEEEEec
Confidence            999999999999998873

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=97.54  E-value=0.00037  Score=62.33  Aligned_cols=52  Identities=25%  Similarity=0.458  Sum_probs=34.9

Q ss_pred             CCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEE
Q 044174          108 RLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVI  187 (332)
Q Consensus       108 ~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl  187 (332)
                      .++|++++|.+++++..+|-.+.. .          |-++.                   -..||+.=++-|+|||.+++
T Consensus        81 ~~~~~~~~d~v~~~~pdpw~k~~h-~----------~~r~~-------------------~~~~l~~~~r~LkpgG~l~~  130 (194)
T TIGR00091        81 KFFPDGSLSKVFLNFPDPWPKKRH-N----------KRRIT-------------------QPHFLKEYANVLKKGGVIHF  130 (194)
T ss_pred             hhCCCCceeEEEEECCCcCCCCCc-c----------ccccC-------------------CHHHHHHHHHHhCCCCEEEE
Confidence            346778999999999999954311 0          00110                   12466666788899999988


Q ss_pred             Ee
Q 044174          188 IM  189 (332)
Q Consensus       188 ~~  189 (332)
                      ..
T Consensus       131 ~t  132 (194)
T TIGR00091       131 KT  132 (194)
T ss_pred             Ee
Confidence            76

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=97.50  E-value=0.00061  Score=64.83  Aligned_cols=25  Identities=16%  Similarity=0.327  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHhhccCCeEEEEec
Q 044174          166 KDMENFLNARAEEIVSGGMMVIIMP  190 (332)
Q Consensus       166 ~d~~~fL~~Ra~EL~pGG~mvl~~~  190 (332)
                      ...+.+++.=.+-|+|||+++++++
T Consensus       228 ~~~~~il~~a~~~L~~gG~l~~e~g  252 (284)
T TIGR03533       228 DLVRRILAEAADHLNENGVLVVEVG  252 (284)
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            4456678777788999999999885

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=97.48  E-value=0.00064  Score=51.55  Aligned_cols=102  Identities=20%  Similarity=0.242  Sum_probs=55.7

Q ss_pred             EEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCccccCC-c
Q 044174           32 RLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHRL-F  110 (332)
Q Consensus        32 ~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~~l-f  110 (332)
                      +|+|+|||.|..+..+..                  .+...++..|+..+-....-+.........+.-+-+++.+.. .
T Consensus         1 ~ildig~G~G~~~~~~~~------------------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   62 (107)
T cd02440           1 RVLDLGCGTGALALALAS------------------GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPE   62 (107)
T ss_pred             CeEEEcCCccHHHHHHhc------------------CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccc
Confidence            589999999998766643                  012345555554332222211110000000111223333333 3


Q ss_pred             CCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEE
Q 044174          111 PQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVII  188 (332)
Q Consensus       111 P~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~  188 (332)
                      +.+++|+++++..+|+.+                                     .+...+++.-.+-|+|||.+++.
T Consensus        63 ~~~~~d~i~~~~~~~~~~-------------------------------------~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          63 ADESFDVIISDPPLHHLV-------------------------------------EDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             cCCceEEEEEccceeehh-------------------------------------hHHHHHHHHHHHHcCCCCEEEEE
Confidence            567899999999988850                                     12334555555667899999886

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=97.46  E-value=0.00034  Score=69.26  Aligned_cols=107  Identities=13%  Similarity=0.157  Sum_probs=59.5

Q ss_pred             eEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHh-cCcccc---cceeeecCCccc
Q 044174           31 IRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFT-SLPQQR---EYYSAGVPGSFH  106 (332)
Q Consensus        31 ~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~-~l~~~~---~~f~~~vpgSFy  106 (332)
                      -+|+|+|||+|.-++.+.+.                 .|..+|+..|... .--...+ ++....   ..-+..+.+..+
T Consensus       230 ~~VLDLGCGtGvi~i~la~~-----------------~P~~~V~~vD~S~-~Av~~A~~N~~~n~~~~~~~v~~~~~D~l  291 (378)
T PRK15001        230 GEIVDLGCGNGVIGLTLLDK-----------------NPQAKVVFVDESP-MAVASSRLNVETNMPEALDRCEFMINNAL  291 (378)
T ss_pred             CeEEEEeccccHHHHHHHHh-----------------CCCCEEEEEECCH-HHHHHHHHHHHHcCcccCceEEEEEcccc
Confidence            48999999999987765431                 2456666666632 1111111 010000   001222334444


Q ss_pred             cCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEE
Q 044174          107 HRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMV  186 (332)
Q Consensus       107 ~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mv  186 (332)
                      .. ++..++|+|+||-.+|+.-.+..                      ..           ...+++.=.+-|+|||.++
T Consensus       292 ~~-~~~~~fDlIlsNPPfh~~~~~~~----------------------~i-----------a~~l~~~a~~~LkpGG~L~  337 (378)
T PRK15001        292 SG-VEPFRFNAVLCNPPFHQQHALTD----------------------NV-----------AWEMFHHARRCLKINGELY  337 (378)
T ss_pred             cc-CCCCCEEEEEECcCcccCccCCH----------------------HH-----------HHHHHHHHHHhcccCCEEE
Confidence            43 35678999999988887432211                      11           1134444456788999999


Q ss_pred             EEe
Q 044174          187 IIM  189 (332)
Q Consensus       187 l~~  189 (332)
                      ++.
T Consensus       338 iV~  340 (378)
T PRK15001        338 IVA  340 (378)
T ss_pred             EEE
Confidence            995

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=97.46  E-value=0.00065  Score=59.00  Aligned_cols=109  Identities=13%  Similarity=0.075  Sum_probs=62.1

Q ss_pred             CccccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 044174          103 GSFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSG  182 (332)
Q Consensus       103 gSFy~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pG  182 (332)
                      |+..+-.++++++|++++++++||+.+                                      ...+|+.-++-||||
T Consensus        33 ~d~~~lp~~~~~fD~v~~~~~l~~~~d--------------------------------------~~~~l~ei~rvLkpG   74 (160)
T PLN02232         33 GDAIDLPFDDCEFDAVTMGYGLRNVVD--------------------------------------RLRAMKEMYRVLKPG   74 (160)
T ss_pred             echhhCCCCCCCeeEEEecchhhcCCC--------------------------------------HHHHHHHHHHHcCcC
Confidence            444455578899999999999999642                                      123455556777899


Q ss_pred             CeEEEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcC----cccCCHHHHHHHHHhCCceEEeEE
Q 044174          183 GMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLP----IYSASSEEMVKLVDKNGHFSIKTV  258 (332)
Q Consensus       183 G~mvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P----~y~ps~~E~~~~ie~~G~F~I~~l  258 (332)
                      |++++.-.+.++...     ....+.....  .-+..-|.+... .+.+..-    ..+|+.+|+.+++++.| |+..+.
T Consensus        75 G~l~i~d~~~~~~~~-----~~~~~~~~~~--~~~~~~~~~~~~-~~~y~yl~~si~~f~~~~el~~ll~~aG-F~~~~~  145 (160)
T PLN02232         75 SRVSILDFNKSNQSV-----TTFMQGWMID--NVVVPVATVYDL-AKEYEYLKYSINGYLTGEELETLALEAG-FSSACH  145 (160)
T ss_pred             eEEEEEECCCCChHH-----HHHHHHHHcc--chHhhhhHHhCC-hHHHHhHHHHHHHCcCHHHHHHHHHHcC-CCcceE
Confidence            999988766544221     0101100000  000111111111 1112111    35789999999999999 874443

>PRK14967 putative methyltransferase; Provisional

Probab=97.45  E-value=0.003  Score=57.65  Aligned_cols=167  Identities=11%  Similarity=0.089  Sum_probs=81.1

Q ss_pred             ceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCccccCC
Q 044174           30 IIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHRL  109 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~~l  109 (332)
                      .-+|+|+|||+|..++.+...  .                .-+|+..|.-.. .-...+........-+..+-+++.. .
T Consensus        37 ~~~vLDlGcG~G~~~~~la~~--~----------------~~~v~~vD~s~~-~l~~a~~n~~~~~~~~~~~~~d~~~-~   96 (223)
T PRK14967         37 GRRVLDLCTGSGALAVAAAAA--G----------------AGSVTAVDISRR-AVRSARLNALLAGVDVDVRRGDWAR-A   96 (223)
T ss_pred             CCeEEEecCCHHHHHHHHHHc--C----------------CCeEEEEECCHH-HHHHHHHHHHHhCCeeEEEECchhh-h
Confidence            469999999999988776431  0                012333333221 1111111000001112334456655 4


Q ss_pred             cCCCceeEEEecCccccccCCccccccC-CCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEE
Q 044174          110 FPQSSIHFAHCSYALHWLSKVPEELLDE-NSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVII  188 (332)
Q Consensus       110 fP~~svd~~~S~~alHWLs~~P~~~~~~-~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~  188 (332)
                      +|++++|+++++--.+.-+...  ..+. ..-.|+.|                .....++..|++.=.+-|+|||++++.
T Consensus        97 ~~~~~fD~Vi~npPy~~~~~~~--~~~~~~~~~~~~~----------------~~~~~~~~~~l~~a~~~Lk~gG~l~~~  158 (223)
T PRK14967         97 VEFRPFDVVVSNPPYVPAPPDA--PPSRGPARAWDAG----------------PDGRAVLDRLCDAAPALLAPGGSLLLV  158 (223)
T ss_pred             ccCCCeeEEEECCCCCCCCccc--ccccChhHhhhCC----------------CcHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            5788999999975333222110  0000 00001111                011234566777777889999999987


Q ss_pred             ecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCC
Q 044174          189 MPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNG  251 (332)
Q Consensus       189 ~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G  251 (332)
                      .....+               +.+++..+...|+ .-+.+.+..+|+ -|..-.....+++.|
T Consensus       159 ~~~~~~---------------~~~~~~~l~~~g~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~  204 (223)
T PRK14967        159 QSELSG---------------VERTLTRLSEAGL-DAEVVASQWIPF-GPVLRARAAWLERRG  204 (223)
T ss_pred             EecccC---------------HHHHHHHHHHCCC-CeEEEEeeccCc-cHHHHHHHHHHHHcC
Confidence            644321               1234444434443 333444455663 333334456677888

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=97.44  E-value=0.00086  Score=54.20  Aligned_cols=20  Identities=40%  Similarity=0.348  Sum_probs=17.1

Q ss_pred             ceEEEeecCCCCcchHHHHH
Q 044174           30 IIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~~   49 (332)
                      ..+|+|+|||+|..+..+++
T Consensus        20 ~~~vldlG~G~G~~~~~l~~   39 (124)
T TIGR02469        20 GDVLWDIGAGSGSITIEAAR   39 (124)
T ss_pred             CCEEEEeCCCCCHHHHHHHH
Confidence            45999999999999988754

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=97.42  E-value=0.00053  Score=62.89  Aligned_cols=128  Identities=9%  Similarity=0.095  Sum_probs=64.8

Q ss_pred             CceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCccccC
Q 044174           29 NIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHR  108 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~~  108 (332)
                      ...+|+|+|||+|..++.++...                 |..+++..|.-..=....=+.+....---+.-+.+++.. 
T Consensus        87 ~~~~ilDig~G~G~~~~~l~~~~-----------------~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-  148 (251)
T TIGR03534        87 GPLRVLDLGTGSGAIALALAKER-----------------PDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-  148 (251)
T ss_pred             CCCeEEEEeCcHhHHHHHHHHHC-----------------CCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-
Confidence            34689999999999888775421                 123444444321111111111110000012234455554 


Q ss_pred             CcCCCceeEEEecCccccccCC---ccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeE
Q 044174          109 LFPQSSIHFAHCSYALHWLSKV---PEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMM  185 (332)
Q Consensus       109 lfP~~svd~~~S~~alHWLs~~---P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~m  185 (332)
                      .+|++++|+++|+--.+..+..   +..+...+              +.... .-......++..|++.=.+.|+|||.+
T Consensus       149 ~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e--------------~~~~~-~~~~~~~~~~~~~i~~~~~~L~~gG~~  213 (251)
T TIGR03534       149 PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHE--------------PRLAL-FGGEDGLDFYRRIIAQAPRLLKPGGWL  213 (251)
T ss_pred             cCcCCceeEEEECCCCCchhhhhhcChhhhhcC--------------CHHHH-cCCCcHHHHHHHHHHHHHHhcccCCEE
Confidence            4578899999997554432221   11110000              00000 001223456677888888899999999


Q ss_pred             EEEe
Q 044174          186 VIIM  189 (332)
Q Consensus       186 vl~~  189 (332)
                      ++..
T Consensus       214 ~~~~  217 (251)
T TIGR03534       214 LLEI  217 (251)
T ss_pred             EEEE
Confidence            9875

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=97.41  E-value=0.0049  Score=56.47  Aligned_cols=21  Identities=10%  Similarity=-0.024  Sum_probs=18.3

Q ss_pred             CceEEEeecCCCCcchHHHHH
Q 044174           29 NIIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~   49 (332)
                      +.-+|+|.|||.|.|++.+++
T Consensus        37 ~~~rvL~~gCG~G~da~~LA~   57 (218)
T PRK13255         37 AGSRVLVPLCGKSLDMLWLAE   57 (218)
T ss_pred             CCCeEEEeCCCChHhHHHHHh
Confidence            346999999999999999874

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.40  E-value=0.001  Score=59.99  Aligned_cols=20  Identities=10%  Similarity=0.283  Sum_probs=17.0

Q ss_pred             ceEEEeecCCCCcchHHHHH
Q 044174           30 IIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~~   49 (332)
                      ..+|+|+|||+|..|..+.+
T Consensus        73 ~~~VLDiG~GsG~~~~~la~   92 (205)
T PRK13944         73 GMKILEVGTGSGYQAAVCAE   92 (205)
T ss_pred             CCEEEEECcCccHHHHHHHH
Confidence            46899999999999977654

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=97.40  E-value=0.00097  Score=60.20  Aligned_cols=21  Identities=14%  Similarity=0.135  Sum_probs=17.1

Q ss_pred             CCceEEEeecCCCCcchHHHH
Q 044174           28 SNIIRLADLGCAVGSNTINAM   48 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~   48 (332)
                      ....+|+|+|||+|..|..+.
T Consensus        77 ~~~~~VLeiG~GsG~~t~~la   97 (212)
T PRK00312         77 KPGDRVLEIGTGSGYQAAVLA   97 (212)
T ss_pred             CCCCEEEEECCCccHHHHHHH
Confidence            445799999999999987543

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=97.38  E-value=0.00053  Score=67.03  Aligned_cols=106  Identities=11%  Similarity=0.199  Sum_probs=60.4

Q ss_pred             eEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCccccCCc
Q 044174           31 IRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHRLF  110 (332)
Q Consensus        31 ~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~~lf  110 (332)
                      -+|+|+|||+|..++.+...                 .|..+|...|.-..=-...=.++.... +-...+.++.+..  
T Consensus       198 g~VLDlGCG~G~ls~~la~~-----------------~p~~~v~~vDis~~Al~~A~~nl~~n~-l~~~~~~~D~~~~--  257 (342)
T PRK09489        198 GKVLDVGCGAGVLSAVLARH-----------------SPKIRLTLSDVSAAALESSRATLAANG-LEGEVFASNVFSD--  257 (342)
T ss_pred             CeEEEeccCcCHHHHHHHHh-----------------CCCCEEEEEECCHHHHHHHHHHHHHcC-CCCEEEEcccccc--
Confidence            47999999999987665431                 134456666653210000000111100 0011123344442  


Q ss_pred             CCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEe
Q 044174          111 PQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIM  189 (332)
Q Consensus       111 P~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~~  189 (332)
                      .++++|+++|+-.+||.-..                                 ...+...|++.=++-|+|||.|+++.
T Consensus       258 ~~~~fDlIvsNPPFH~g~~~---------------------------------~~~~~~~~i~~a~~~LkpgG~L~iVa  303 (342)
T PRK09489        258 IKGRFDMIISNPPFHDGIQT---------------------------------SLDAAQTLIRGAVRHLNSGGELRIVA  303 (342)
T ss_pred             cCCCccEEEECCCccCCccc---------------------------------cHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence            35789999999999983210                                 01345567777778899999999875

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.37  E-value=0.0013  Score=59.70  Aligned_cols=36  Identities=11%  Similarity=0.258  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHhhhhcccCCCCCceEEEeecCCCCcchHHHHH
Q 044174            8 KEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus         8 ~~~l~~ai~~~~~~~~~~~~~~~~~iaD~GCs~G~ns~~~~~   49 (332)
                      .|.+...+.+.+..      .+..+|+|+|||+|..|..+..
T Consensus        61 ~p~~~~~~~~~l~~------~~g~~VLdIG~GsG~~t~~la~   96 (212)
T PRK13942         61 AIHMVAIMCELLDL------KEGMKVLEIGTGSGYHAAVVAE   96 (212)
T ss_pred             cHHHHHHHHHHcCC------CCcCEEEEECCcccHHHHHHHH
Confidence            34454444444432      3357999999999999977654

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=97.34  E-value=0.0013  Score=57.75  Aligned_cols=123  Identities=13%  Similarity=0.055  Sum_probs=61.8

Q ss_pred             eEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCccccCCc
Q 044174           31 IRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHRLF  110 (332)
Q Consensus        31 ~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~~lf  110 (332)
                      -+|+|+|||+|..++.+....                 +  +|+-.|+-. ++-...+.......+-+..+-++.+..  
T Consensus        21 ~~vLdlG~G~G~~~~~l~~~~-----------------~--~v~~vD~s~-~~~~~a~~~~~~~~~~~~~~~~d~~~~--   78 (179)
T TIGR00537        21 DDVLEIGAGTGLVAIRLKGKG-----------------K--CILTTDINP-FAVKELRENAKLNNVGLDVVMTDLFKG--   78 (179)
T ss_pred             CeEEEeCCChhHHHHHHHhcC-----------------C--EEEEEECCH-HHHHHHHHHHHHcCCceEEEEcccccc--
Confidence            579999999999887765320                 1  333333311 111111110000011122344555543  


Q ss_pred             CCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEec
Q 044174          111 PQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIMP  190 (332)
Q Consensus       111 P~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~~~  190 (332)
                      +.+++|+++|+..+|.....+.. .+....++..|                ..-...+..||+.=.+-|+|||++++...
T Consensus        79 ~~~~fD~Vi~n~p~~~~~~~~~~-~~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~  141 (179)
T TIGR00537        79 VRGKFDVILFNPPYLPLEDDLRR-GDWLDVAIDGG----------------KDGRKVIDRFLDELPEILKEGGRVQLIQS  141 (179)
T ss_pred             cCCcccEEEECCCCCCCcchhcc-cchhhhhhhcC----------------CchHHHHHHHHHhHHHhhCCCCEEEEEEe
Confidence            24589999999888865432211 00000000000                00012245577777778899999999875


Q ss_pred             cc
Q 044174          191 GI  192 (332)
Q Consensus       191 gr  192 (332)
                      +.
T Consensus       142 ~~  143 (179)
T TIGR00537       142 SL  143 (179)
T ss_pred             cc
Confidence            43

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.34  E-value=0.0014  Score=60.20  Aligned_cols=103  Identities=23%  Similarity=0.313  Sum_probs=73.0

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCcccc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHH  107 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~  107 (332)
                      ++.-+|+|+|+|+|..++.++.        .         .|.+++..-|||..  ....+.     .-.+.-+||+|+ 
T Consensus        99 ~~~~~vvDvGGG~G~~~~~l~~--------~---------~P~l~~~v~Dlp~v--~~~~~~-----~~rv~~~~gd~f-  153 (241)
T PF00891_consen   99 SGFKTVVDVGGGSGHFAIALAR--------A---------YPNLRATVFDLPEV--IEQAKE-----ADRVEFVPGDFF-  153 (241)
T ss_dssp             TTSSEEEEET-TTSHHHHHHHH--------H---------STTSEEEEEE-HHH--HCCHHH-----TTTEEEEES-TT-
T ss_pred             cCccEEEeccCcchHHHHHHHH--------H---------CCCCcceeeccHhh--hhcccc-----ccccccccccHH-
Confidence            3446899999999998876633        2         46788999999873  111111     345667999999 


Q ss_pred             CCcCCCceeEEEecCccc-cccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccC--Ce
Q 044174          108 RLFPQSSIHFAHCSYALH-WLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSG--GM  184 (332)
Q Consensus       108 ~lfP~~svd~~~S~~alH-WLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pG--G~  184 (332)
                      .-+|.  .|+++-...|| | +.                                    .+-..+|+.-++.|+||  |+
T Consensus       154 ~~~P~--~D~~~l~~vLh~~-~d------------------------------------~~~~~iL~~~~~al~pg~~g~  194 (241)
T PF00891_consen  154 DPLPV--ADVYLLRHVLHDW-SD------------------------------------EDCVKILRNAAAALKPGKDGR  194 (241)
T ss_dssp             TCCSS--ESEEEEESSGGGS--H------------------------------------HHHHHHHHHHHHHSEECTTEE
T ss_pred             hhhcc--ccceeeehhhhhc-ch------------------------------------HHHHHHHHHHHHHhCCCCCCe
Confidence            88999  99999999998 6 21                                    24446888889999999  99


Q ss_pred             EEEEecccCC
Q 044174          185 MVIIMPGIPY  194 (332)
Q Consensus       185 mvl~~~gr~~  194 (332)
                      +++.=.-.++
T Consensus       195 llI~e~~~~~  204 (241)
T PF00891_consen  195 LLIIEMVLPD  204 (241)
T ss_dssp             EEEEEEEECS
T ss_pred             EEEEeeccCC
Confidence            9988655444

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=97.32  E-value=0.0011  Score=57.98  Aligned_cols=109  Identities=16%  Similarity=0.235  Sum_probs=57.3

Q ss_pred             ceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccc-cceeeecCCccccC
Q 044174           30 IIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQR-EYYSAGVPGSFHHR  108 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~-~~f~~~vpgSFy~~  108 (332)
                      .-+|+|+|||+|.-++.+...                 .|...|...|.-.+=-...=+++.... .- +..+.++.+..
T Consensus        32 ~~~vLDlG~G~G~i~~~la~~-----------------~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~   93 (170)
T PF05175_consen   32 GGRVLDLGCGSGVISLALAKR-----------------GPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEA   93 (170)
T ss_dssp             TCEEEEETSTTSHHHHHHHHT-----------------STCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTT
T ss_pred             CCeEEEecCChHHHHHHHHHh-----------------CCCCEEEEEcCCHHHHHHHHHHHHhcCccc-ccccccccccc
Confidence            467999999999999887531                 123334444433222221111111111 10 33334444443


Q ss_pred             CcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEE
Q 044174          109 LFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVII  188 (332)
Q Consensus       109 lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~  188 (332)
                      + ++.++|+++||--+|+-.                                 +....-+..|++.=.+-|+|||.+++.
T Consensus        94 ~-~~~~fD~Iv~NPP~~~~~---------------------------------~~~~~~~~~~i~~a~~~Lk~~G~l~lv  139 (170)
T PF05175_consen   94 L-PDGKFDLIVSNPPFHAGG---------------------------------DDGLDLLRDFIEQARRYLKPGGRLFLV  139 (170)
T ss_dssp             C-CTTCEEEEEE---SBTTS---------------------------------HCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             c-cccceeEEEEccchhccc---------------------------------ccchhhHHHHHHHHHHhccCCCEEEEE
Confidence            3 478999999954433311                                 001122345566556788899999987


Q ss_pred             ec
Q 044174          189 MP  190 (332)
Q Consensus       189 ~~  190 (332)
                      ..
T Consensus       140 ~~  141 (170)
T PF05175_consen  140 IN  141 (170)
T ss_dssp             EE
T ss_pred             ee
Confidence            63

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PHA03411 putative methyltransferase; Provisional

Probab=97.30  E-value=0.002  Score=61.02  Aligned_cols=118  Identities=11%  Similarity=0.084  Sum_probs=64.5

Q ss_pred             eEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCccccCCc
Q 044174           31 IRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHRLF  110 (332)
Q Consensus        31 ~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~~lf  110 (332)
                      -+|+|+|||+|..++.+...                 .+..+|+..|+-. ++-.+.+....  .  +..+-+++..- .
T Consensus        66 grVLDLGcGsGilsl~la~r-----------------~~~~~V~gVDisp-~al~~Ar~n~~--~--v~~v~~D~~e~-~  122 (279)
T PHA03411         66 GKVLDLCAGIGRLSFCMLHR-----------------CKPEKIVCVELNP-EFARIGKRLLP--E--AEWITSDVFEF-E  122 (279)
T ss_pred             CeEEEcCCCCCHHHHHHHHh-----------------CCCCEEEEEECCH-HHHHHHHHhCc--C--CEEEECchhhh-c
Confidence            58999999999877665331                 0123455555532 33333333211  1  12234455432 2


Q ss_pred             CCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHH--HHHHHHHHHHHhhccCCeEEEE
Q 044174          111 PQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAK--DMENFLNARAEEIVSGGMMVII  188 (332)
Q Consensus       111 P~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~--d~~~fL~~Ra~EL~pGG~mvl~  188 (332)
                      +..++|+++|+-.++++.....  .+  ...|.-|.                ...+  .+..||+..+.=|+|+|...+.
T Consensus       123 ~~~kFDlIIsNPPF~~l~~~d~--~~--~~~~~GG~----------------~g~~~l~~~~~l~~v~~~L~p~G~~~~~  182 (279)
T PHA03411        123 SNEKFDVVISNPPFGKINTTDT--KD--VFEYTGGE----------------FEFKVMTLGQKFADVGYFIVPTGSAGFA  182 (279)
T ss_pred             ccCCCcEEEEcCCccccCchhh--hh--hhhhccCc----------------cccccccHHHHHhhhHheecCCceEEEE
Confidence            4568999999999998643211  10  01111110                0001  1467888888888899977777


Q ss_pred             ecc
Q 044174          189 MPG  191 (332)
Q Consensus       189 ~~g  191 (332)
                      +-|
T Consensus       183 yss  185 (279)
T PHA03411        183 YSG  185 (279)
T ss_pred             Eec
Confidence            544

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=97.26  E-value=0.0076  Score=55.01  Aligned_cols=58  Identities=16%  Similarity=0.213  Sum_probs=38.5

Q ss_pred             HHHHHHHHHhhccCCeEEEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHH
Q 044174          169 ENFLNARAEEIVSGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVD  248 (332)
Q Consensus       169 ~~fL~~Ra~EL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie  248 (332)
                      ..+++.-.+-|+|||++++.....+...                                  ..-|-|.-+.+|+++.+.
T Consensus       132 ~~~~~~l~~lLkpgG~~ll~~~~~~~~~----------------------------------~~gpp~~~~~~eL~~~f~  177 (213)
T TIGR03840       132 QRYAAHLLALLPPGARQLLITLDYDQSE----------------------------------MAGPPFSVSPAEVEALYG  177 (213)
T ss_pred             HHHHHHHHHHcCCCCeEEEEEEEcCCCC----------------------------------CCCcCCCCCHHHHHHHhc
Confidence            3466677788999998777665432211                                  011447788999999886


Q ss_pred             hCCceEEeEEEEeC
Q 044174          249 KNGHFSIKTVELTN  262 (332)
Q Consensus       249 ~~G~F~I~~le~~~  262 (332)
                       .+ |.|+.++...
T Consensus       178 -~~-~~i~~~~~~~  189 (213)
T TIGR03840       178 -GH-YEIELLESRD  189 (213)
T ss_pred             -CC-ceEEEEeecc
Confidence             34 8888877544

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=97.19  E-value=0.0026  Score=57.11  Aligned_cols=93  Identities=18%  Similarity=0.361  Sum_probs=62.5

Q ss_pred             cCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEe
Q 044174          110 FPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIM  189 (332)
Q Consensus       110 fP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~~  189 (332)
                      ||++|+|.|+-+-+|+=+.+ |..+                                     |+   +-|+-|.+.+++|
T Consensus        71 f~d~sFD~VIlsqtLQ~~~~-P~~v-------------------------------------L~---EmlRVgr~~IVsF  109 (193)
T PF07021_consen   71 FPDQSFDYVILSQTLQAVRR-PDEV-------------------------------------LE---EMLRVGRRAIVSF  109 (193)
T ss_pred             CCCCCccEEehHhHHHhHhH-HHHH-------------------------------------HH---HHHHhcCeEEEEe
Confidence            79999999999888876544 4332                                     22   3356899999999


Q ss_pred             cccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCccc------CCHHHHHHHHHhCCceEEeEEEEeC
Q 044174          190 PGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYS------ASSEEMVKLVDKNGHFSIKTVELTN  262 (332)
Q Consensus       190 ~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~------ps~~E~~~~ie~~G~F~I~~le~~~  262 (332)
                      +.-           +. |.    .-..+.-.|..+..+  .+..+||.      -|..+++++.++.| ++|++-..+.
T Consensus       110 PNF-----------g~-W~----~R~~l~~~GrmPvt~--~lPy~WYdTPNih~~Ti~DFe~lc~~~~-i~I~~~~~~~  169 (193)
T PF07021_consen  110 PNF-----------GH-WR----NRLQLLLRGRMPVTK--ALPYEWYDTPNIHLCTIKDFEDLCRELG-IRIEERVFLD  169 (193)
T ss_pred             cCh-----------HH-HH----HHHHHHhcCCCCCCC--CCCCcccCCCCcccccHHHHHHHHHHCC-CEEEEEEEEc
Confidence            652           21 21    112233346666443  34455664      58999999999999 8998877765

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=97.18  E-value=0.0026  Score=61.25  Aligned_cols=24  Identities=13%  Similarity=0.288  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHhhccCCeEEEEec
Q 044174          167 DMENFLNARAEEIVSGGMMVIIMP  190 (332)
Q Consensus       167 d~~~fL~~Ra~EL~pGG~mvl~~~  190 (332)
                      ..+.+++.-.+-|+|||+++++++
T Consensus       241 ~~~~i~~~a~~~L~pgG~l~~E~g  264 (307)
T PRK11805        241 LVRRILAEAPDYLTEDGVLVVEVG  264 (307)
T ss_pred             HHHHHHHHHHHhcCCCCEEEEEEC
Confidence            344577777777899999999864

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=97.16  E-value=0.003  Score=57.29  Aligned_cols=36  Identities=14%  Similarity=0.262  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHhhhhcccCCCCCceEEEeecCCCCcchHHHHH
Q 044174            8 KEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus         8 ~~~l~~ai~~~~~~~~~~~~~~~~~iaD~GCs~G~ns~~~~~   49 (332)
                      .|.+.+.+.+.+..      ....+|+|+|||+|..|+.+..
T Consensus        62 ~p~~~~~~~~~l~~------~~~~~VLDiG~GsG~~a~~la~   97 (215)
T TIGR00080        62 APHMVAMMTELLEL------KPGMKVLEIGTGSGYQAAVLAE   97 (215)
T ss_pred             hHHHHHHHHHHhCC------CCcCEEEEECCCccHHHHHHHH
Confidence            34444445444432      3457999999999999987654

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=97.15  E-value=0.00051  Score=62.43  Aligned_cols=89  Identities=21%  Similarity=0.308  Sum_probs=47.5

Q ss_pred             CCCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCC-CchHHHHhcCcccccceeeecCCcc
Q 044174           27 ASNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTS-NDFNTLFTSLPQQREYYSAGVPGSF  105 (332)
Q Consensus        27 ~~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~-NDFn~lf~~l~~~~~~f~~~vpgSF  105 (332)
                      .++..+|||+|||++.-+        .++..            .+.|+-=||-. ||+-+         .|=++.||   
T Consensus        70 ~~~~~viaD~GCGdA~la--------~~~~~------------~~~V~SfDLva~n~~Vt---------acdia~vP---  117 (219)
T PF05148_consen   70 RPKSLVIADFGCGDAKLA--------KAVPN------------KHKVHSFDLVAPNPRVT---------ACDIANVP---  117 (219)
T ss_dssp             S-TTS-EEEES-TT-HHH--------HH--S---------------EEEEESS-SSTTEE---------ES-TTS-S---
T ss_pred             cCCCEEEEECCCchHHHH--------Hhccc------------CceEEEeeccCCCCCEE---------EecCccCc---
Confidence            466799999999998766        11211            23344444433 33221         12223344   


Q ss_pred             ccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeE
Q 044174          106 HHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMM  185 (332)
Q Consensus       106 y~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~m  185 (332)
                          ++++|+|++..+-||.=                                       .||..||+-=.+-|||||.|
T Consensus       118 ----L~~~svDv~VfcLSLMG---------------------------------------Tn~~~fi~EA~RvLK~~G~L  154 (219)
T PF05148_consen  118 ----LEDESVDVAVFCLSLMG---------------------------------------TNWPDFIREANRVLKPGGIL  154 (219)
T ss_dssp             ------TT-EEEEEEES---S---------------------------------------S-HHHHHHHHHHHEEEEEEE
T ss_pred             ----CCCCceeEEEEEhhhhC---------------------------------------CCcHHHHHHHHheeccCcEE
Confidence                69999999988655431                                       37888999888999999999


Q ss_pred             EEEec
Q 044174          186 VIIMP  190 (332)
Q Consensus       186 vl~~~  190 (332)
                      .+.-.
T Consensus       155 ~IAEV  159 (219)
T PF05148_consen  155 KIAEV  159 (219)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            88753

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=97.14  E-value=0.0021  Score=62.62  Aligned_cols=106  Identities=18%  Similarity=0.306  Sum_probs=62.6

Q ss_pred             CceEEEeecCCCCcchHHHH-------------HHHHHHHHHhhhhcCCC--CCCC----ceEEEecCCCCCchHHHHhc
Q 044174           29 NIIRLADLGCAVGSNTINAM-------------QDVLEVIKNKCHSQCPS--SKLP----EFQVFFNDKTSNDFNTLFTS   89 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~-------------~~ii~~i~~~~~~~~~~--~~~~----~~~v~~nDlp~NDFn~lf~~   89 (332)
                      ...+|+|||||-|+-..-..             ...|+..+++|.+....  ...+    ...++..|.....    .. 
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~----l~-  136 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSES----LR-  136 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSH----HH-
T ss_pred             CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccch----hh-
Confidence            67999999999999876654             44555566666331100  0011    2222333332211    11 


Q ss_pred             CcccccceeeecCCccccCCcC--CCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHH
Q 044174           90 LPQQREYYSAGVPGSFHHRLFP--QSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKD  167 (332)
Q Consensus        90 l~~~~~~f~~~vpgSFy~~lfP--~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d  167 (332)
                                        ..++  ...+|+|=+-.|||..=..                                  +.-
T Consensus       137 ------------------~~~~~~~~~FDvVScQFalHY~Fes----------------------------------e~~  164 (331)
T PF03291_consen  137 ------------------EKLPPRSRKFDVVSCQFALHYAFES----------------------------------EEK  164 (331)
T ss_dssp             ------------------CTSSSTTS-EEEEEEES-GGGGGSS----------------------------------HHH
T ss_pred             ------------------hhccccCCCcceeehHHHHHHhcCC----------------------------------HHH
Confidence                              1222  3599999999999983321                                  233


Q ss_pred             HHHHHHHHHHhhccCCeEEEEecc
Q 044174          168 MENFLNARAEEIVSGGMMVIIMPG  191 (332)
Q Consensus       168 ~~~fL~~Ra~EL~pGG~mvl~~~g  191 (332)
                      .++||+.-++-|+|||.|+.+++-
T Consensus       165 ar~~l~Nvs~~Lk~GG~FIgT~~d  188 (331)
T PF03291_consen  165 ARQFLKNVSSLLKPGGYFIGTTPD  188 (331)
T ss_dssp             HHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred             HHHHHHHHHHhcCCCCEEEEEecC
Confidence            467999999999999999999974

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=97.13  E-value=0.0013  Score=65.37  Aligned_cols=100  Identities=18%  Similarity=0.309  Sum_probs=60.5

Q ss_pred             CceEEEeecCCCCcchHHHHHH--------------HHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccc
Q 044174           29 NIIRLADLGCAVGSNTINAMQD--------------VLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQR   94 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~~--------------ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~   94 (332)
                      ....++|+|||+|..++.++..              .+..+.++....+    ...+.++..|.                
T Consensus       122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~g----L~NV~~i~~DA----------------  181 (390)
T PRK14121        122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLN----LKNLLIINYDA----------------  181 (390)
T ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC----CCcEEEEECCH----------------
Confidence            3468999999999999888743              2233322222211    12233333332                


Q ss_pred             cceeeecCCccccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHH
Q 044174           95 EYYSAGVPGSFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNA  174 (332)
Q Consensus        95 ~~f~~~vpgSFy~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~  174 (332)
                               ...-..+|++++|.+++++...|..+..             .++                   -...||+.
T Consensus       182 ---------~~ll~~~~~~s~D~I~lnFPdPW~KkrH-------------RRl-------------------v~~~fL~e  220 (390)
T PRK14121        182 ---------RLLLELLPSNSVEKIFVHFPVPWDKKPH-------------RRV-------------------ISEDFLNE  220 (390)
T ss_pred             ---------HHhhhhCCCCceeEEEEeCCCCccccch-------------hhc-------------------cHHHHHHH
Confidence                     1112357899999999998888833211             011                   02356777


Q ss_pred             HHHhhccCCeEEEEe
Q 044174          175 RAEEIVSGGMMVIIM  189 (332)
Q Consensus       175 Ra~EL~pGG~mvl~~  189 (332)
                      =++-|+|||.+.+..
T Consensus       221 ~~RvLkpGG~l~l~T  235 (390)
T PRK14121        221 ALRVLKPGGTLELRT  235 (390)
T ss_pred             HHHHcCCCcEEEEEE
Confidence            778888999998876

>TIGR00536 hemK_fam HemK family putative methylases

Probab=97.12  E-value=0.0029  Score=59.98  Aligned_cols=27  Identities=7%  Similarity=0.208  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHhhccCCeEEEEecc
Q 044174          165 AKDMENFLNARAEEIVSGGMMVIIMPG  191 (332)
Q Consensus       165 ~~d~~~fL~~Ra~EL~pGG~mvl~~~g  191 (332)
                      ..+.+.+++.-.+-|+|||.++++++-
T Consensus       220 l~~~~~ii~~a~~~L~~gG~l~~e~g~  246 (284)
T TIGR00536       220 LNILRQIIELAPDYLKPNGFLVCEIGN  246 (284)
T ss_pred             HHHHHHHHHHHHHhccCCCEEEEEECc
Confidence            345667777777788999999999853

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PTZ00146 fibrillarin; Provisional

Probab=97.11  E-value=0.0095  Score=56.98  Aligned_cols=40  Identities=18%  Similarity=0.171  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHhhhhcccCCCCCceEEEeecCCCCcchHHHHHH
Q 044174            8 KEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQD   50 (332)
Q Consensus         8 ~~~l~~ai~~~~~~~~~~~~~~~~~iaD~GCs~G~ns~~~~~~   50 (332)
                      ++.|-.||-.=++...   ..+..+|+|+|||+|..|..+.+.
T Consensus       114 rSKlaa~i~~g~~~l~---IkpG~~VLDLGaG~G~~t~~lAdi  153 (293)
T PTZ00146        114 RSKLAAAIIGGVANIP---IKPGSKVLYLGAASGTTVSHVSDL  153 (293)
T ss_pred             ccHHHHHHHCCcceec---cCCCCEEEEeCCcCCHHHHHHHHH
Confidence            3456666633222221   233469999999999988776553

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=97.06  E-value=0.0058  Score=56.12  Aligned_cols=59  Identities=15%  Similarity=0.156  Sum_probs=46.2

Q ss_pred             ccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeE
Q 044174          106 HHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMM  185 (332)
Q Consensus       106 y~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~m  185 (332)
                      -+-.|+++++|-++|-.|++||=..-+...                           .=++-+..|+..=+..|++|++-
T Consensus       104 ~GlpfrpGtFDg~ISISAvQWLcnA~~s~~---------------------------~P~~Rl~~FF~tLy~~l~rg~ra  156 (270)
T KOG1541|consen  104 EGLPFRPGTFDGVISISAVQWLCNADKSLH---------------------------VPKKRLLRFFGTLYSCLKRGARA  156 (270)
T ss_pred             CCCCCCCCccceEEEeeeeeeecccCcccc---------------------------ChHHHHHHHhhhhhhhhccCcee
Confidence            466799999999999999999866443321                           11356777888888999999999


Q ss_pred             EEEecc
Q 044174          186 VIIMPG  191 (332)
Q Consensus       186 vl~~~g  191 (332)
                      |+.+-=
T Consensus       157 V~QfYp  162 (270)
T KOG1541|consen  157 VLQFYP  162 (270)
T ss_pred             EEEecc
Confidence            999954

>TIGR00438 rrmJ cell division protein FtsJ

Probab=97.05  E-value=0.0045  Score=54.81  Aligned_cols=23  Identities=22%  Similarity=0.211  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHhhccCCeEEEEe
Q 044174          167 DMENFLNARAEEIVSGGMMVIIM  189 (332)
Q Consensus       167 d~~~fL~~Ra~EL~pGG~mvl~~  189 (332)
                      +...+|+.=.+-|+|||++++..
T Consensus       124 ~~~~~l~~~~~~LkpgG~lvi~~  146 (188)
T TIGR00438       124 LVELALDIAKEVLKPKGNFVVKV  146 (188)
T ss_pred             HHHHHHHHHHHHccCCCEEEEEE
Confidence            45667888888899999999975

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=96.90  E-value=0.0033  Score=56.94  Aligned_cols=77  Identities=16%  Similarity=0.191  Sum_probs=44.5

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhc-CcccccceeeecCCccc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTS-LPQQREYYSAGVPGSFH  106 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~-l~~~~~~f~~~vpgSFy  106 (332)
                      +..-+|+|+|||+|..+..+.+..                 +..+++--|.-. +.-...+. ++.     +..+.|+..
T Consensus        42 ~~~~~VLDiGCG~G~~~~~L~~~~-----------------~~~~v~giDiS~-~~l~~A~~~~~~-----~~~~~~d~~   98 (204)
T TIGR03587        42 PKIASILELGANIGMNLAALKRLL-----------------PFKHIYGVEINE-YAVEKAKAYLPN-----INIIQGSLF   98 (204)
T ss_pred             CCCCcEEEEecCCCHHHHHHHHhC-----------------CCCeEEEEECCH-HHHHHHHhhCCC-----CcEEEeecc
Confidence            445689999999998887764321                 112233333221 11112211 111     112245555


Q ss_pred             cCCcCCCceeEEEecCcccccc
Q 044174          107 HRLFPQSSIHFAHCSYALHWLS  128 (332)
Q Consensus       107 ~~lfP~~svd~~~S~~alHWLs  128 (332)
                      . .+|++++|+|+|+.+||+++
T Consensus        99 ~-~~~~~sfD~V~~~~vL~hl~  119 (204)
T TIGR03587        99 D-PFKDNFFDLVLTKGVLIHIN  119 (204)
T ss_pred             C-CCCCCCEEEEEECChhhhCC
Confidence            5 68999999999999998763

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=96.87  E-value=0.0047  Score=57.58  Aligned_cols=25  Identities=8%  Similarity=0.243  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHHhhccCCeEEEEe
Q 044174          165 AKDMENFLNARAEEIVSGGMMVIIM  189 (332)
Q Consensus       165 ~~d~~~fL~~Ra~EL~pGG~mvl~~  189 (332)
                      ..++..|++.=.+-|+|||.++++.
T Consensus       214 ~~~~~~~~~~~~~~Lk~gG~l~~e~  238 (275)
T PRK09328        214 LDFYRRIIEQAPRYLKPGGWLLLEI  238 (275)
T ss_pred             HHHHHHHHHHHHHhcccCCEEEEEE
Confidence            3456667777778888999999976

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=96.83  E-value=0.02  Score=51.20  Aligned_cols=48  Identities=27%  Similarity=0.315  Sum_probs=31.5

Q ss_pred             CCceEEEeecCCCCcchHHHH--------------HHHHHHHHHhhhhcCCCCCCCceEEEecCCC
Q 044174           28 SNIIRLADLGCAVGSNTINAM--------------QDVLEVIKNKCHSQCPSSKLPEFQVFFNDKT   79 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~--------------~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp   79 (332)
                      .+.-++.|+|||+|.-|+..+              ...++.+++.+.+-+    -+.++|.--|-|
T Consensus        33 ~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg----~~n~~vv~g~Ap   94 (187)
T COG2242          33 RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG----VDNLEVVEGDAP   94 (187)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC----CCcEEEEeccch
Confidence            334699999999999999987              335666666655432    234554444444

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=96.83  E-value=0.011  Score=47.57  Aligned_cols=24  Identities=38%  Similarity=0.618  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHhhccCCeEEEEec
Q 044174          167 DMENFLNARAEEIVSGGMMVIIMP  190 (332)
Q Consensus       167 d~~~fL~~Ra~EL~pGG~mvl~~~  190 (332)
                      +...|++.=.+-|+|||.+++..+
T Consensus        93 ~~~~~~~~~~~~L~~gG~~~~~~~  116 (117)
T PF13659_consen   93 LYSRFLEAAARLLKPGGVLVFITP  116 (117)
T ss_dssp             HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHcCCCeEEEEEeC
Confidence            556788888899999999999864

...

>PRK14968 putative methyltransferase; Provisional

Probab=96.78  E-value=0.037  Score=48.15  Aligned_cols=23  Identities=17%  Similarity=0.540  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHhhccCCeEEEEec
Q 044174          168 MENFLNARAEEIVSGGMMVIIMP  190 (332)
Q Consensus       168 ~~~fL~~Ra~EL~pGG~mvl~~~  190 (332)
                      ...|++.-.+-|+|||.+++...
T Consensus       127 ~~~~i~~~~~~Lk~gG~~~~~~~  149 (188)
T PRK14968        127 IDRFLDEVGRYLKPGGRILLLQS  149 (188)
T ss_pred             HHHHHHHHHHhcCCCeEEEEEEc
Confidence            45677777788999999988763

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=96.77  E-value=0.011  Score=56.36  Aligned_cols=18  Identities=33%  Similarity=0.536  Sum_probs=15.1

Q ss_pred             ceEEEeecCCCCcchHHH
Q 044174           30 IIRLADLGCAVGSNTINA   47 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~   47 (332)
                      .-+|+|+|||+|..++.+
T Consensus       160 g~~VLDvGcGsG~lai~a  177 (288)
T TIGR00406       160 DKNVIDVGCGSGILSIAA  177 (288)
T ss_pred             CCEEEEeCCChhHHHHHH
Confidence            479999999999877654

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=96.76  E-value=0.004  Score=64.00  Aligned_cols=126  Identities=13%  Similarity=0.097  Sum_probs=64.9

Q ss_pred             ceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcc-cc-cceeeecCCcccc
Q 044174           30 IIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQ-QR-EYYSAGVPGSFHH  107 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~-~~-~~f~~~vpgSFy~  107 (332)
                      ..+|+|+|||+|..++.++..                 .|..+|+..|.-. +...+.+.-.. .. .-.+..+-|+++.
T Consensus       139 ~~~VLDlG~GsG~iai~la~~-----------------~p~~~v~avDis~-~al~~A~~N~~~~~l~~~v~~~~~D~~~  200 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCE-----------------LPNANVIATDISL-DAIEVAKSNAIKYEVTDRIQIIHSNWFE  200 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHH-----------------CCCCeEEEEECCH-HHHHHHHHHHHHcCCccceeeeecchhh
Confidence            468999999999999876542                 1234555556521 22222221110 00 0123334455554


Q ss_pred             CCcCCCceeEEEecCccccccCCccc---cccC-CCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 044174          108 RLFPQSSIHFAHCSYALHWLSKVPEE---LLDE-NSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGG  183 (332)
Q Consensus       108 ~lfP~~svd~~~S~~alHWLs~~P~~---~~~~-~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG  183 (332)
                      . +|.+++|+++|+--....+..+..   +.+. ...++-.|                +.....++.+++.-.+-|+|||
T Consensus       201 ~-~~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg----------------~dGl~~~~~il~~a~~~L~~gG  263 (506)
T PRK01544        201 N-IEKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAE----------------EDGLQAYFIIAENAKQFLKPNG  263 (506)
T ss_pred             h-CcCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCC----------------ccHHHHHHHHHHHHHHhccCCC
Confidence            3 366789999996433332222111   0000 00000000                1233455667777777889999


Q ss_pred             eEEEEec
Q 044174          184 MMVIIMP  190 (332)
Q Consensus       184 ~mvl~~~  190 (332)
                      .++++++
T Consensus       264 ~l~lEig  270 (506)
T PRK01544        264 KIILEIG  270 (506)
T ss_pred             EEEEEEC
Confidence            9999863

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=96.73  E-value=0.029  Score=50.97  Aligned_cols=172  Identities=16%  Similarity=0.177  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHhhhhcccCCCCCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHH
Q 044174            8 KEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLF   87 (332)
Q Consensus         8 ~~~l~~ai~~~~~~~~~~~~~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf   87 (332)
                      |.-|-+.+++.+..      ... +|+++|||+|--+..+.+.                 -|.++.-=+|...+-+.++-
T Consensus        11 k~pIl~vL~~~l~~------~~~-~vLEiaSGtGqHa~~FA~~-----------------lP~l~WqPSD~~~~~~~sI~   66 (204)
T PF06080_consen   11 KDPILEVLKQYLPD------SGT-RVLEIASGTGQHAVYFAQA-----------------LPHLTWQPSDPDDNLRPSIR   66 (204)
T ss_pred             HhHHHHHHHHHhCc------cCc-eEEEEcCCccHHHHHHHHH-----------------CCCCEEcCCCCChHHHhhHH
Confidence            34444556555432      212 7999999999888776432                 24566666777777776665


Q ss_pred             hcCccc-----ccceeeecCCccccC----CcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHH
Q 044174           88 TSLPQQ-----REYYSAGVPGSFHHR----LFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVN  158 (332)
Q Consensus        88 ~~l~~~-----~~~f~~~vpgSFy~~----lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~  158 (332)
                      .-+...     .+-...-|...--.-    .++.+++|.++|.+.+|-.+-   .                      .. 
T Consensus        67 a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~---~----------------------~~-  120 (204)
T PF06080_consen   67 AWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIFCINMLHISPW---S----------------------AV-  120 (204)
T ss_pred             HHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceeeehhHHHhcCH---H----------------------HH-
Confidence            433211     111111111110000    126779999999999997443   1                      11 


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccCCeEEEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccC
Q 044174          159 AYASQFAKDMENFLNARAEEIVSGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSA  238 (332)
Q Consensus       159 ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~p  238 (332)
                                ..+++.=++-|++||.|++.-+=..++..+++   ++  ..+...|++.              +--|=.+
T Consensus       121 ----------~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~---SN--~~FD~sLr~r--------------dp~~GiR  171 (204)
T PF06080_consen  121 ----------EGLFAGAARLLKPGGLLFLYGPFNRDGKFTSE---SN--AAFDASLRSR--------------DPEWGIR  171 (204)
T ss_pred             ----------HHHHHHHHHhCCCCCEEEEeCCcccCCEeCCc---HH--HHHHHHHhcC--------------CCCcCcc
Confidence                      23556667899999999998765555544433   11  2445555522              3347889


Q ss_pred             CHHHHHHHHHhCCceEEeEEE
Q 044174          239 SSEEMVKLVDKNGHFSIKTVE  259 (332)
Q Consensus       239 s~~E~~~~ie~~G~F~I~~le  259 (332)
                      ..+++.++-+++| ++.+...
T Consensus       172 D~e~v~~lA~~~G-L~l~~~~  191 (204)
T PF06080_consen  172 DIEDVEALAAAHG-LELEEDI  191 (204)
T ss_pred             CHHHHHHHHHHCC-CccCccc
Confidence            9999999999999 6654443

The function of this family is unknown.

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=96.67  E-value=0.0023  Score=59.94  Aligned_cols=25  Identities=16%  Similarity=0.445  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHhhccCCeEEEEec
Q 044174          166 KDMENFLNARAEEIVSGGMMVIIMP  190 (332)
Q Consensus       166 ~d~~~fL~~Ra~EL~pGG~mvl~~~  190 (332)
                      .||..|++--.+-|++||.+.+.-.
T Consensus       241 tn~~df~kEa~RiLk~gG~l~IAEv  265 (325)
T KOG3045|consen  241 TNLADFIKEANRILKPGGLLYIAEV  265 (325)
T ss_pred             ccHHHHHHHHHHHhccCceEEEEeh
Confidence            3788899999999999999988754

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=96.64  E-value=0.03  Score=53.03  Aligned_cols=120  Identities=13%  Similarity=0.156  Sum_probs=72.0

Q ss_pred             ceEEEeecCCCCcchHHHHH--------------HHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCccccc
Q 044174           30 IIRLADLGCAVGSNTINAMQ--------------DVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQRE   95 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~~--------------~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~   95 (332)
                      .-.|+|+|||+|.-|+.++.              ..|.-..+.++...   -.--|.|.++|+-+-=|+..-        
T Consensus       149 ~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~---l~g~i~v~~~~me~d~~~~~~--------  217 (328)
T KOG2904|consen  149 HTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLK---LSGRIEVIHNIMESDASDEHP--------  217 (328)
T ss_pred             cceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHh---hcCceEEEecccccccccccc--------
Confidence            34899999999999999873              34444444444332   133688999888776555511        


Q ss_pred             ceeeecCCccccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHH--------HHHHHH
Q 044174           96 YYSAGVPGSFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYA--------SQFAKD  167 (332)
Q Consensus        96 ~f~~~vpgSFy~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~--------~q~~~d  167 (332)
                                    .+.+.+|+..|         .|+-+.+.+-+.          ..++|.. |.        .....-
T Consensus       218 --------------l~~~~~dllvs---------NPPYI~~dD~~~----------l~~eV~~-yEp~lALdGg~eG~~~  263 (328)
T KOG2904|consen  218 --------------LLEGKIDLLVS---------NPPYIRKDDNRQ----------LKPEVRL-YEPKLALDGGLEGYDN  263 (328)
T ss_pred             --------------cccCceeEEec---------CCCcccccchhh----------cCchhee-cCchhhhccccchhHH
Confidence                          46677888888         344443221110          0111110 00        011123


Q ss_pred             HHHHHHHHHHhhccCCeEEEEecccCC
Q 044174          168 MENFLNARAEEIVSGGMMVIIMPGIPY  194 (332)
Q Consensus       168 ~~~fL~~Ra~EL~pGG~mvl~~~gr~~  194 (332)
                      +..|+..-.+-|+|||.++++..++..
T Consensus       264 ~~~~~~~a~R~Lq~gg~~~le~~~~~~  290 (328)
T KOG2904|consen  264 LVHYWLLATRMLQPGGFEQLELVERKE  290 (328)
T ss_pred             HHHHHHhhHhhcccCCeEEEEeccccc
Confidence            445666667789999999999998854

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=96.63  E-value=0.0019  Score=65.39  Aligned_cols=24  Identities=29%  Similarity=0.707  Sum_probs=20.1

Q ss_pred             ccCCcCCCceeEEEecCccc-cccC
Q 044174          106 HHRLFPQSSIHFAHCSYALH-WLSK  129 (332)
Q Consensus       106 y~~lfP~~svd~~~S~~alH-WLs~  129 (332)
                      .+..||++++|++||+-|+. |.+.
T Consensus       173 ~rLPfp~~~fDmvHcsrc~i~W~~~  197 (506)
T PF03141_consen  173 QRLPFPSNAFDMVHCSRCLIPWHPN  197 (506)
T ss_pred             ccccCCccchhhhhcccccccchhc
Confidence            46679999999999999986 7554

; GO: 0008168 methyltransferase activity

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=96.48  E-value=0.013  Score=58.85  Aligned_cols=19  Identities=26%  Similarity=0.356  Sum_probs=16.3

Q ss_pred             eEEEeecCCCCcchHHHHH
Q 044174           31 IRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus        31 ~~iaD~GCs~G~ns~~~~~   49 (332)
                      .+|+|+|||+|..++.+..
T Consensus       253 ~rVLDLGcGSG~IaiaLA~  271 (423)
T PRK14966        253 GRVWDLGTGSGAVAVTVAL  271 (423)
T ss_pred             CEEEEEeChhhHHHHHHHH
Confidence            4899999999999987753

>PRK07402 precorrin-6B methylase; Provisional

Probab=96.30  E-value=0.052  Score=48.33  Aligned_cols=20  Identities=25%  Similarity=0.257  Sum_probs=17.0

Q ss_pred             CceEEEeecCCCCcchHHHH
Q 044174           29 NIIRLADLGCAVGSNTINAM   48 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~   48 (332)
                      ..-+|+|+|||+|..++.+.
T Consensus        40 ~~~~VLDiG~G~G~~~~~la   59 (196)
T PRK07402         40 PDSVLWDIGAGTGTIPVEAG   59 (196)
T ss_pred             CCCEEEEeCCCCCHHHHHHH
Confidence            34689999999999988774

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=96.25  E-value=0.11  Score=46.32  Aligned_cols=21  Identities=33%  Similarity=0.515  Sum_probs=17.3

Q ss_pred             CCceEEEeecCCCCcchHHHH
Q 044174           28 SNIIRLADLGCAVGSNTINAM   48 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~   48 (332)
                      ...-+|+|+|||+|.-++.+.
T Consensus        39 ~~~~~vlDlG~GtG~~s~~~a   59 (198)
T PRK00377         39 RKGDMILDIGCGTGSVTVEAS   59 (198)
T ss_pred             CCcCEEEEeCCcCCHHHHHHH
Confidence            445799999999999888764

>PRK00811 spermidine synthase; Provisional

Probab=96.22  E-value=0.041  Score=52.31  Aligned_cols=22  Identities=18%  Similarity=0.196  Sum_probs=18.3

Q ss_pred             CCCceEEEeecCCCCcchHHHH
Q 044174           27 ASNIIRLADLGCAVGSNTINAM   48 (332)
Q Consensus        27 ~~~~~~iaD~GCs~G~ns~~~~   48 (332)
                      .+++-+|+|+|||+|..+..++
T Consensus        74 ~~~p~~VL~iG~G~G~~~~~~l   95 (283)
T PRK00811         74 HPNPKRVLIIGGGDGGTLREVL   95 (283)
T ss_pred             CCCCCEEEEEecCchHHHHHHH
Confidence            3556799999999999987775

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=96.22  E-value=0.025  Score=52.59  Aligned_cols=19  Identities=32%  Similarity=0.448  Sum_probs=15.1

Q ss_pred             CceEEEeecCCCCcchHHH
Q 044174           29 NIIRLADLGCAVGSNTINA   47 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~   47 (332)
                      ..-+|+|+|||+|..++.+
T Consensus       119 ~~~~VLDiGcGsG~l~i~~  137 (250)
T PRK00517        119 PGKTVLDVGCGSGILAIAA  137 (250)
T ss_pred             CCCEEEEeCCcHHHHHHHH
Confidence            3579999999999776544

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=96.18  E-value=0.04  Score=50.25  Aligned_cols=110  Identities=15%  Similarity=0.166  Sum_probs=62.0

Q ss_pred             cceeeecCCccccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHH
Q 044174           95 EYYSAGVPGSFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNA  174 (332)
Q Consensus        95 ~~f~~~vpgSFy~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~  174 (332)
                      .+|+.|-+.+.-+  +|+.|+|.|.+..+|.=-.+                               ..+.       |+.
T Consensus       128 ~~fvva~ge~l~~--l~d~s~DtVV~TlvLCSve~-------------------------------~~k~-------L~e  167 (252)
T KOG4300|consen  128 ERFVVADGENLPQ--LADGSYDTVVCTLVLCSVED-------------------------------PVKQ-------LNE  167 (252)
T ss_pred             EEEEeechhcCcc--cccCCeeeEEEEEEEeccCC-------------------------------HHHH-------HHH
Confidence            4688888776654  39999999998655432111                               1222       333


Q ss_pred             HHHhhccCCeEEEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceE
Q 044174          175 RAEEIVSGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFS  254 (332)
Q Consensus       175 Ra~EL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~  254 (332)
                      -.+-|+|||++++.--|++.-+.     ...+++...+-+-.+...|               +.=--|.-+.||+.. |+
T Consensus       168 ~~rlLRpgG~iifiEHva~~y~~-----~n~i~q~v~ep~~~~~~dG---------------C~ltrd~~e~Leda~-f~  226 (252)
T KOG4300|consen  168 VRRLLRPGGRIIFIEHVAGEYGF-----WNRILQQVAEPLWHLESDG---------------CVLTRDTGELLEDAE-FS  226 (252)
T ss_pred             HHHhcCCCcEEEEEecccccchH-----HHHHHHHHhchhhheeccc---------------eEEehhHHHHhhhcc-cc
Confidence            33455699999999888765221     1222322222222222222               222344556777777 88


Q ss_pred             EeEEEEeC-CCC
Q 044174          255 IKTVELTN-PTS  265 (332)
Q Consensus       255 I~~le~~~-p~~  265 (332)
                      +.+.+.+. |+.
T Consensus       227 ~~~~kr~~~~tt  238 (252)
T KOG4300|consen  227 IDSCKRFNFGTT  238 (252)
T ss_pred             cchhhcccCCce
Confidence            88888776 443

>PLN03075 nicotianamine synthase; Provisional

Probab=96.17  E-value=0.028  Score=53.94  Aligned_cols=20  Identities=15%  Similarity=-0.031  Sum_probs=16.2

Q ss_pred             CceEEEeecCCCCcchHHHH
Q 044174           29 NIIRLADLGCAVGSNTINAM   48 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~   48 (332)
                      .+-+|+|+|||.|+-|...+
T Consensus       123 ~p~~VldIGcGpgpltaiil  142 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVL  142 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHH
Confidence            56899999999998766554

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.16  E-value=0.032  Score=50.80  Aligned_cols=49  Identities=31%  Similarity=0.432  Sum_probs=36.3

Q ss_pred             eeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEec
Q 044174          115 IHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIMP  190 (332)
Q Consensus       115 vd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~~~  190 (332)
                      +++.+---+..|=+..|-.            +|+++.+.+++-+++.+               -|++||+||+-.+
T Consensus       122 V~v~~gDG~~G~~~~aPyD------------~I~Vtaaa~~vP~~Ll~---------------QL~~gGrlv~PvG  170 (209)
T COG2518         122 VTVRHGDGSKGWPEEAPYD------------RIIVTAAAPEVPEALLD---------------QLKPGGRLVIPVG  170 (209)
T ss_pred             eEEEECCcccCCCCCCCcC------------EEEEeeccCCCCHHHHH---------------hcccCCEEEEEEc
Confidence            7777777777775555532            58888777777777665               4789999999987

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=96.16  E-value=0.027  Score=51.38  Aligned_cols=36  Identities=14%  Similarity=0.188  Sum_probs=23.6

Q ss_pred             hHHHHHHHHHHhhhhcccCCCCCceEEEeecCCCCcchHHHH
Q 044174            7 VKEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAM   48 (332)
Q Consensus         7 ~~~~l~~ai~~~~~~~~~~~~~~~~~iaD~GCs~G~ns~~~~   48 (332)
                      ..|.+...+-+.+.+      ....+|+|+|||+|.+|..+.
T Consensus        56 s~P~~~a~~l~~L~l------~pg~~VLeIGtGsGY~aAlla   91 (209)
T PF01135_consen   56 SAPSMVARMLEALDL------KPGDRVLEIGTGSGYQAALLA   91 (209)
T ss_dssp             --HHHHHHHHHHTTC-------TT-EEEEES-TTSHHHHHHH
T ss_pred             hHHHHHHHHHHHHhc------CCCCEEEEecCCCcHHHHHHH
Confidence            456666666666653      335899999999999998875

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=96.11  E-value=0.077  Score=51.39  Aligned_cols=24  Identities=29%  Similarity=0.306  Sum_probs=18.7

Q ss_pred             HHHHHHHHHhhccCCeEEEEeccc
Q 044174          169 ENFLNARAEEIVSGGMMVIIMPGI  192 (332)
Q Consensus       169 ~~fL~~Ra~EL~pGG~mvl~~~gr  192 (332)
                      ..+|+.=++-|+|||++++.++..
T Consensus       274 ~~~l~~~~r~Lk~gG~lv~~~~~~  297 (329)
T TIGR01177       274 ERSLEEFHEVLKSEGWIVYAVPTR  297 (329)
T ss_pred             HHHHHHHHHHccCCcEEEEEEcCC
Confidence            456666667889999999998754

This family is found exclusively in the Archaea.

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=96.04  E-value=0.081  Score=53.34  Aligned_cols=63  Identities=13%  Similarity=0.107  Sum_probs=39.2

Q ss_pred             CCceeEEEe---cCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEE
Q 044174          112 QSSIHFAHC---SYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVII  188 (332)
Q Consensus       112 ~~svd~~~S---~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~  188 (332)
                      ++++|.|++   ++.+..+.+.|+....               .+++    -..+..+.-...|..=++-|+|||+||..
T Consensus       305 ~~~fD~Vl~DaPCsg~G~~~~~p~~~~~---------------~~~~----~~~~l~~~Q~~iL~~a~~~LkpGG~LvYs  365 (431)
T PRK14903        305 QDTFDRILVDAPCTSLGTARNHPEVLRR---------------VNKE----DFKKLSEIQLRIVSQAWKLLEKGGILLYS  365 (431)
T ss_pred             hccCCEEEECCCCCCCccccCChHHHHh---------------CCHH----HHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            457888886   2445556665544321               0111    12344455567888888899999999988


Q ss_pred             ecccC
Q 044174          189 MPGIP  193 (332)
Q Consensus       189 ~~gr~  193 (332)
                      .....
T Consensus       366 TCs~~  370 (431)
T PRK14903        366 TCTVT  370 (431)
T ss_pred             ECCCC
Confidence            76643

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=95.73  E-value=0.069  Score=49.87  Aligned_cols=20  Identities=20%  Similarity=0.351  Sum_probs=17.2

Q ss_pred             ceEEEeecCCCCcchHHHHH
Q 044174           30 IIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~~   49 (332)
                      ..+|+|+|||+|.-++.+..
T Consensus        87 ~~~vLDlg~GsG~i~l~la~  106 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAA  106 (251)
T ss_pred             CCEEEEecCchHHHHHHHHH
Confidence            46899999999999988754

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=95.73  E-value=0.13  Score=51.74  Aligned_cols=26  Identities=19%  Similarity=0.157  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHHHhhccCCeEEEEec
Q 044174          165 AKDMENFLNARAEEIVSGGMMVIIMP  190 (332)
Q Consensus       165 ~~d~~~fL~~Ra~EL~pGG~mvl~~~  190 (332)
                      ......+|..=++-|+|||+||....
T Consensus       348 ~~~q~~iL~~a~~~LkpGG~lvystc  373 (427)
T PRK10901        348 AALQSEILDALWPLLKPGGTLLYATC  373 (427)
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence            34556778777788999999997764

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=95.71  E-value=0.13  Score=51.65  Aligned_cols=127  Identities=13%  Similarity=0.112  Sum_probs=64.6

Q ss_pred             ceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccc-cceeeecCCccccC
Q 044174           30 IIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQR-EYYSAGVPGSFHHR  108 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~-~~f~~~vpgSFy~~  108 (332)
                      ..+|+|+|||+|.-|+.+++.+-                 .-.|+-.|.-.+=-..+-+++.... .+-+..+.|.-...
T Consensus       239 g~~VLDlcag~G~kt~~la~~~~-----------------~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~  301 (426)
T TIGR00563       239 EETILDACAAPGGKTTHILELAP-----------------QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGP  301 (426)
T ss_pred             CCeEEEeCCCccHHHHHHHHHcC-----------------CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccc
Confidence            46999999999999987754310                 1233444442222222222221111 11122222322221


Q ss_pred             C--cCCCceeEEEec---CccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 044174          109 L--FPQSSIHFAHCS---YALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGG  183 (332)
Q Consensus       109 l--fP~~svd~~~S~---~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG  183 (332)
                      .  .+.+++|.+++-   +++.-+.+.|+...              ..++..+     .+..+.-..+|+.=++-|+|||
T Consensus       302 ~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~--------------~~~~~~~-----~~l~~lQ~~lL~~a~~~LkpgG  362 (426)
T TIGR00563       302 SQWAENEQFDRILLDAPCSATGVIRRHPDIKW--------------LRKPRDI-----AELAELQSEILDAIWPLLKTGG  362 (426)
T ss_pred             cccccccccCEEEEcCCCCCCcccccCcchhh--------------cCCHHHH-----HHHHHHHHHHHHHHHHhcCCCc
Confidence            1  256789999862   34444445554321              1111222     2233344567777777899999


Q ss_pred             eEEEEeccc
Q 044174          184 MMVIIMPGI  192 (332)
Q Consensus       184 ~mvl~~~gr  192 (332)
                      +||.....-
T Consensus       363 ~lvystcs~  371 (426)
T TIGR00563       363 TLVYATCSV  371 (426)
T ss_pred             EEEEEeCCC
Confidence            999887654

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=95.69  E-value=0.09  Score=50.52  Aligned_cols=33  Identities=24%  Similarity=0.375  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHhhhhcccCCCCCceEEEeecCCCCcchHHHH
Q 044174            8 KEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAM   48 (332)
Q Consensus         8 ~~~l~~ai~~~~~~~~~~~~~~~~~iaD~GCs~G~ns~~~~   48 (332)
                      ..+.-+++.+..        .+..+++|+|||||--|+...
T Consensus       149 T~lcL~~Le~~~--------~~g~~vlDvGcGSGILaIAa~  181 (300)
T COG2264         149 TSLCLEALEKLL--------KKGKTVLDVGCGSGILAIAAA  181 (300)
T ss_pred             HHHHHHHHHHhh--------cCCCEEEEecCChhHHHHHHH
Confidence            345555555433        356899999999999998876

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=95.67  E-value=0.027  Score=52.27  Aligned_cols=23  Identities=26%  Similarity=0.427  Sum_probs=19.1

Q ss_pred             HHHHHHHHhhccCCeEEEEeccc
Q 044174          170 NFLNARAEEIVSGGMMVIIMPGI  192 (332)
Q Consensus       170 ~fL~~Ra~EL~pGG~mvl~~~gr  192 (332)
                      .|+++=++=+||||.|++.-.-|
T Consensus       142 ~~~~~c~~lvkP~G~lf~STinr  164 (243)
T COG2227         142 SFLRACAKLVKPGGILFLSTINR  164 (243)
T ss_pred             HHHHHHHHHcCCCcEEEEecccc
Confidence            37778888899999999987664

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=95.38  E-value=0.077  Score=51.55  Aligned_cols=21  Identities=19%  Similarity=0.322  Sum_probs=17.8

Q ss_pred             CceEEEeecCCCCcchHHHHH
Q 044174           29 NIIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~   49 (332)
                      +..+|+|+|||+|.+++.+..
T Consensus        80 ~g~~VLDIG~GtG~~a~~LA~  100 (322)
T PRK13943         80 KGMRVLEIGGGTGYNAAVMSR  100 (322)
T ss_pred             CCCEEEEEeCCccHHHHHHHH
Confidence            347999999999999988754

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=95.25  E-value=0.16  Score=51.30  Aligned_cols=21  Identities=19%  Similarity=0.031  Sum_probs=17.8

Q ss_pred             ceEEEeecCCCCcchHHHHHH
Q 044174           30 IIRLADLGCAVGSNTINAMQD   50 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~~~   50 (332)
                      .-+|+|+|||+|.-|+.+.+.
T Consensus       251 g~~VLDlgaG~G~~t~~la~~  271 (444)
T PRK14902        251 GDTVLDACAAPGGKTTHIAEL  271 (444)
T ss_pred             CCEEEEeCCCCCHHHHHHHHH
Confidence            468999999999999887653

>TIGR00417 speE spermidine synthase

Probab=95.02  E-value=0.21  Score=46.97  Aligned_cols=21  Identities=14%  Similarity=0.124  Sum_probs=16.4

Q ss_pred             CCceEEEeecCCCCcchHHHH
Q 044174           28 SNIIRLADLGCAVGSNTINAM   48 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~   48 (332)
                      +++-+|+|+|||+|..+..++
T Consensus        71 ~~p~~VL~iG~G~G~~~~~ll   91 (270)
T TIGR00417        71 PNPKHVLVIGGGDGGVLREVL   91 (270)
T ss_pred             CCCCEEEEEcCCchHHHHHHH
Confidence            445599999999999776554

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=94.99  E-value=0.072  Score=48.81  Aligned_cols=135  Identities=20%  Similarity=0.318  Sum_probs=78.4

Q ss_pred             CCceEEEeecCCCCcchHHHH-------------HHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccc
Q 044174           28 SNIIRLADLGCAVGSNTINAM-------------QDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQR   94 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~-------------~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~   94 (332)
                      .+.-+.+|.|+|.|.-|-.++             ...++..++.....                           .+.-.
T Consensus        54 ~~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~---------------------------~~~v~  106 (218)
T PF05891_consen   54 PKFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKD---------------------------NPRVG  106 (218)
T ss_dssp             ---SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCG---------------------------GCCEE
T ss_pred             CCcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhccc---------------------------CCCcc
Confidence            567899999999999997653             33444443321110                           00011


Q ss_pred             cceeeecCCccccCCcCC-CceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHH
Q 044174           95 EYYSAGVPGSFHHRLFPQ-SSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLN  173 (332)
Q Consensus        95 ~~f~~~vpgSFy~~lfP~-~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~  173 (332)
                      .+|..|.-     -.-|. +..|++|.-||+-.|..                                    .|+-.||+
T Consensus       107 ~~~~~gLQ-----~f~P~~~~YDlIW~QW~lghLTD------------------------------------~dlv~fL~  145 (218)
T PF05891_consen  107 EFYCVGLQ-----DFTPEEGKYDLIWIQWCLGHLTD------------------------------------EDLVAFLK  145 (218)
T ss_dssp             EEEES-GG-----G----TT-EEEEEEES-GGGS-H------------------------------------HHHHHHHH
T ss_pred             eEEecCHh-----hccCCCCcEeEEEehHhhccCCH------------------------------------HHHHHHHH
Confidence            34444443     22354 79999999888877654                                    58899999


Q ss_pred             HHHHhhccCCeEEEEe-cccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCc
Q 044174          174 ARAEEIVSGGMMVIIM-PGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGH  252 (332)
Q Consensus       174 ~Ra~EL~pGG~mvl~~-~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~  252 (332)
                      .=.+.|+|||.+|+=- ......                         ...+++  |    -...||.+.++.+++++| 
T Consensus       146 RCk~~L~~~G~IvvKEN~~~~~~-------------------------~~~D~~--D----sSvTRs~~~~~~lF~~AG-  193 (218)
T PF05891_consen  146 RCKQALKPNGVIVVKENVSSSGF-------------------------DEFDEE--D----SSVTRSDEHFRELFKQAG-  193 (218)
T ss_dssp             HHHHHEEEEEEEEEEEEEESSSE-------------------------EEEETT--T----TEEEEEHHHHHHHHHHCT-
T ss_pred             HHHHhCcCCcEEEEEecCCCCCC-------------------------cccCCc--c----CeeecCHHHHHHHHHHcC-
Confidence            8889999999888742 221110                         011111  2    236788999999999999 


Q ss_pred             eEEeEEEEeC
Q 044174          253 FSIKTVELTN  262 (332)
Q Consensus       253 F~I~~le~~~  262 (332)
                      ++|.+-+.-.
T Consensus       194 l~~v~~~~Q~  203 (218)
T PF05891_consen  194 LRLVKEEKQK  203 (218)
T ss_dssp             -EEEEEEE-T
T ss_pred             CEEEEecccc
Confidence            7887776543

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=94.98  E-value=0.16  Score=48.82  Aligned_cols=18  Identities=28%  Similarity=0.578  Sum_probs=15.9

Q ss_pred             EEEeecCCCCcchHHHHH
Q 044174           32 RLADLGCAVGSNTINAMQ   49 (332)
Q Consensus        32 ~iaD~GCs~G~ns~~~~~   49 (332)
                      +|+|+|||-|.-++.+.+
T Consensus       161 ~vlDlGCG~Gvlg~~la~  178 (300)
T COG2813         161 KVLDLGCGYGVLGLVLAK  178 (300)
T ss_pred             cEEEeCCCccHHHHHHHH
Confidence            999999999999887754

>PRK04457 spermidine synthase; Provisional

Probab=94.91  E-value=0.37  Score=45.27  Aligned_cols=21  Identities=14%  Similarity=0.075  Sum_probs=16.7

Q ss_pred             CCceEEEeecCCCCcchHHHH
Q 044174           28 SNIIRLADLGCAVGSNTINAM   48 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~   48 (332)
                      +.+-+|+|+|||.|.-+..+.
T Consensus        65 ~~~~~vL~IG~G~G~l~~~l~   85 (262)
T PRK04457         65 PRPQHILQIGLGGGSLAKFIY   85 (262)
T ss_pred             CCCCEEEEECCCHhHHHHHHH
Confidence            445689999999998877664

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=94.91  E-value=0.26  Score=49.82  Aligned_cols=28  Identities=21%  Similarity=0.278  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHHhhccCCeEEEEeccc
Q 044174          165 AKDMENFLNARAEEIVSGGMMVIIMPGI  192 (332)
Q Consensus       165 ~~d~~~fL~~Ra~EL~pGG~mvl~~~gr  192 (332)
                      .+.-..+|..=++-|+|||+||......
T Consensus       353 ~~~q~~iL~~a~~~lkpgG~lvystcs~  380 (445)
T PRK14904        353 VGLQAELLDHAASLLKPGGVLVYATCSI  380 (445)
T ss_pred             HHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            3455578888888899999999987554

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=94.81  E-value=0.14  Score=49.61  Aligned_cols=47  Identities=19%  Similarity=0.418  Sum_probs=35.6

Q ss_pred             CCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEec
Q 044174          111 PQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIMP  190 (332)
Q Consensus       111 P~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~~~  190 (332)
                      ++-++|++=|=+|+|+-=.                    +              ..-.+.+|+.-++-|+|||.|+-+++
T Consensus       193 ~dp~fDivScQF~~HYaFe--------------------t--------------ee~ar~~l~Nva~~LkpGG~FIgTiP  238 (389)
T KOG1975|consen  193 KDPRFDIVSCQFAFHYAFE--------------------T--------------EESARIALRNVAKCLKPGGVFIGTIP  238 (389)
T ss_pred             CCCCcceeeeeeeEeeeec--------------------c--------------HHHHHHHHHHHHhhcCCCcEEEEecC
Confidence            5556999999999997111                    0              11234689999999999999999996


Q ss_pred             c
Q 044174          191 G  191 (332)
Q Consensus       191 g  191 (332)
                      -
T Consensus       239 d  239 (389)
T KOG1975|consen  239 D  239 (389)
T ss_pred             c
Confidence            5

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=94.79  E-value=0.3  Score=45.85  Aligned_cols=27  Identities=11%  Similarity=0.278  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHHhhccCCeEEEEecc
Q 044174          165 AKDMENFLNARAEEIVSGGMMVIIMPG  191 (332)
Q Consensus       165 ~~d~~~fL~~Ra~EL~pGG~mvl~~~g  191 (332)
                      .+.-..+|+.=++-|+|||++|.....
T Consensus       175 ~~~q~~iL~~a~~~lkpgG~lvYstcs  201 (264)
T TIGR00446       175 SALQKELIDSAFDALKPGGVLVYSTCS  201 (264)
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            344456788888889999999877543

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=94.42  E-value=0.16  Score=44.02  Aligned_cols=21  Identities=14%  Similarity=0.134  Sum_probs=18.1

Q ss_pred             ceEEEeecCCCCcchHHHHHH
Q 044174           30 IIRLADLGCAVGSNTINAMQD   50 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~~~   50 (332)
                      .-+|+|+|||+|..|..+++.
T Consensus        14 ~~~vLEiG~G~G~lt~~l~~~   34 (169)
T smart00650       14 GDTVLEIGPGKGALTEELLER   34 (169)
T ss_pred             cCEEEEECCCccHHHHHHHhc
Confidence            458999999999999988753

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=94.09  E-value=0.61  Score=47.01  Aligned_cols=26  Identities=23%  Similarity=0.229  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHHHhhccCCeEEEEec
Q 044174          165 AKDMENFLNARAEEIVSGGMMVIIMP  190 (332)
Q Consensus       165 ~~d~~~fL~~Ra~EL~pGG~mvl~~~  190 (332)
                      .+.-..+|..=++-|||||+||....
T Consensus       360 ~~~Q~~iL~~a~~~lkpgG~lvystc  385 (434)
T PRK14901        360 APLQAELLESLAPLLKPGGTLVYATC  385 (434)
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence            34446778888888999999997653

>PLN02366 spermidine synthase

Probab=93.88  E-value=0.59  Score=45.12  Aligned_cols=22  Identities=14%  Similarity=0.057  Sum_probs=17.4

Q ss_pred             CCCceEEEeecCCCCcchHHHH
Q 044174           27 ASNIIRLADLGCAVGSNTINAM   48 (332)
Q Consensus        27 ~~~~~~iaD~GCs~G~ns~~~~   48 (332)
                      .+++-+|+|+|||.|..+..++
T Consensus        89 ~~~pkrVLiIGgG~G~~~rell  110 (308)
T PLN02366         89 IPNPKKVLVVGGGDGGVLREIA  110 (308)
T ss_pred             CCCCCeEEEEcCCccHHHHHHH
Confidence            3567899999999999766554

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=93.64  E-value=0.13  Score=46.27  Aligned_cols=112  Identities=18%  Similarity=0.286  Sum_probs=60.5

Q ss_pred             eEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcc--ccccee-eecCCcccc
Q 044174           31 IRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQ--QREYYS-AGVPGSFHH  107 (332)
Q Consensus        31 ~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~--~~~~f~-~~vpgSFy~  107 (332)
                      ..++|+|||.|...+.++..                 .|+..++--|.-.+=.....+....  ..++.+ .+=...+..
T Consensus        19 ~l~lEIG~G~G~~l~~~A~~-----------------~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~   81 (195)
T PF02390_consen   19 PLILEIGCGKGEFLIELAKR-----------------NPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLR   81 (195)
T ss_dssp             EEEEEET-TTSHHHHHHHHH-----------------STTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHH
T ss_pred             CeEEEecCCCCHHHHHHHHH-----------------CCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHh
Confidence            39999999999988877531                 2344444444433333322222211  113332 233344567


Q ss_pred             CCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEE
Q 044174          108 RLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVI  187 (332)
Q Consensus       108 ~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl  187 (332)
                      .++|++|++-++-++.==|-.+--.           |-++.    .               ..||..=++-|+|||.+.+
T Consensus        82 ~~~~~~~v~~i~i~FPDPWpK~rH~-----------krRl~----~---------------~~fl~~~~~~L~~gG~l~~  131 (195)
T PF02390_consen   82 RLFPPGSVDRIYINFPDPWPKKRHH-----------KRRLV----N---------------PEFLELLARVLKPGGELYF  131 (195)
T ss_dssp             HHSTTTSEEEEEEES-----SGGGG-----------GGSTT----S---------------HHHHHHHHHHEEEEEEEEE
T ss_pred             hcccCCchheEEEeCCCCCcccchh-----------hhhcC----C---------------chHHHHHHHHcCCCCEEEE
Confidence            7889999999999888777443211           11221    1               1467777788999998876


Q ss_pred             Ee
Q 044174          188 IM  189 (332)
Q Consensus       188 ~~  189 (332)
                      .-
T Consensus       132 ~T  133 (195)
T PF02390_consen  132 AT  133 (195)
T ss_dssp             EE
T ss_pred             Ee
Confidence            54

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=93.49  E-value=0.48  Score=44.37  Aligned_cols=48  Identities=19%  Similarity=0.402  Sum_probs=35.1

Q ss_pred             CCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEec
Q 044174          111 PQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIMP  190 (332)
Q Consensus       111 P~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~~~  190 (332)
                      -.+-+|+++|..--.|                    ||....            -..+.+|++.-+.-|.|||+||++=-
T Consensus       163 ~~~~fDiIlcLSiTkW--------------------IHLNwg------------D~GL~~ff~kis~ll~pgGiLvvEPQ  210 (288)
T KOG2899|consen  163 IQPEFDIILCLSITKW--------------------IHLNWG------------DDGLRRFFRKISSLLHPGGILVVEPQ  210 (288)
T ss_pred             ccccccEEEEEEeeee--------------------Eecccc------------cHHHHHHHHHHHHhhCcCcEEEEcCC
Confidence            4456788888777777                    444332            24577888889999999999999753

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=93.22  E-value=0.23  Score=47.30  Aligned_cols=19  Identities=32%  Similarity=0.564  Sum_probs=16.6

Q ss_pred             EEEeecCCCCcchHHHHHH
Q 044174           32 RLADLGCAVGSNTINAMQD   50 (332)
Q Consensus        32 ~iaD~GCs~G~ns~~~~~~   50 (332)
                      +|+|+|||||.-++.++..
T Consensus       113 ~ilDlGTGSG~iai~la~~  131 (280)
T COG2890         113 RILDLGTGSGAIAIALAKE  131 (280)
T ss_pred             cEEEecCChHHHHHHHHhh
Confidence            8999999999999887643

>PRK03612 spermidine synthase; Provisional

Probab=93.14  E-value=0.55  Score=48.52  Aligned_cols=22  Identities=18%  Similarity=0.166  Sum_probs=17.8

Q ss_pred             CCceEEEeecCCCCcchHHHHH
Q 044174           28 SNIIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~   49 (332)
                      +++-+|+|+|||+|..+..+++
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~  317 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLK  317 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHh
Confidence            5567999999999998876653

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=93.03  E-value=0.56  Score=43.31  Aligned_cols=22  Identities=14%  Similarity=0.199  Sum_probs=18.2

Q ss_pred             CCceEEEeecCCCCcchHHHHH
Q 044174           28 SNIIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~   49 (332)
                      .++-+|+|+||++|..++.++.
T Consensus        67 ~~~~~vLEiGt~~G~s~l~la~   88 (234)
T PLN02781         67 MNAKNTLEIGVFTGYSLLTTAL   88 (234)
T ss_pred             hCCCEEEEecCcccHHHHHHHH
Confidence            3467999999999999887754

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=92.96  E-value=0.66  Score=42.16  Aligned_cols=24  Identities=21%  Similarity=0.293  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHHHHhhccCCeEEE
Q 044174          164 FAKDMENFLNARAEEIVSGGMMVI  187 (332)
Q Consensus       164 ~~~d~~~fL~~Ra~EL~pGG~mvl  187 (332)
                      |..|+..-|..+..+||+|-++|.
T Consensus       133 F~~~l~~~L~~~~~~lk~G~~IIs  156 (205)
T PF08123_consen  133 FDPDLNLALAELLLELKPGARIIS  156 (205)
T ss_dssp             T-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred             cCHHHHHHHHHHHhcCCCCCEEEE
Confidence            345666778888899999877664

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=92.89  E-value=2.3  Score=42.55  Aligned_cols=27  Identities=7%  Similarity=0.194  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHHHHHhhccCCeEEEEe
Q 044174          163 QFAKDMENFLNARAEEIVSGGMMVIIM  189 (332)
Q Consensus       163 q~~~d~~~fL~~Ra~EL~pGG~mvl~~  189 (332)
                      ++.+++..+++.=.+-|+|||.+++.-
T Consensus       313 ~~~~~y~~l~~~a~~lLk~gG~lv~~s  339 (396)
T PRK15128        313 GACRGYKDINMLAIQLLNPGGILLTFS  339 (396)
T ss_pred             HHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence            445667777777778889999998654

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=92.68  E-value=1.8  Score=42.29  Aligned_cols=153  Identities=18%  Similarity=0.249  Sum_probs=93.9

Q ss_pred             CceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCccccC
Q 044174           29 NIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHR  108 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~~  108 (332)
                      ..-..+|.|-|.|..+=.+++        .|         |.+..+-=|+|.=+-..-.-. |.     |--+.|-|++-
T Consensus       177 ~v~~avDvGgGiG~v~k~ll~--------~f---------p~ik~infdlp~v~~~a~~~~-~g-----V~~v~gdmfq~  233 (342)
T KOG3178|consen  177 GVNVAVDVGGGIGRVLKNLLS--------KY---------PHIKGINFDLPFVLAAAPYLA-PG-----VEHVAGDMFQD  233 (342)
T ss_pred             cCceEEEcCCcHhHHHHHHHH--------hC---------CCCceeecCHHHHHhhhhhhc-CC-----cceeccccccc
Confidence            467889999999988755533        22         334444444443222221111 11     67788999998


Q ss_pred             CcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEE
Q 044174          109 LFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVII  188 (332)
Q Consensus       109 lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~  188 (332)
                       .|++-  ++|.-|+||-+..                                    +|...||+.=++-|+|||.+++.
T Consensus       234 -~P~~d--aI~mkWiLhdwtD------------------------------------edcvkiLknC~~sL~~~GkIiv~  274 (342)
T KOG3178|consen  234 -TPKGD--AIWMKWILHDWTD------------------------------------EDCVKILKNCKKSLPPGGKIIVV  274 (342)
T ss_pred             -CCCcC--eEEEEeecccCCh------------------------------------HHHHHHHHHHHHhCCCCCEEEEE
Confidence             99887  8998888883211                                    58888999999999999999887


Q ss_pred             ecccCCCCCCCCc--chhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEe
Q 044174          189 MPGIPYGMPYSHL--TNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELT  261 (332)
Q Consensus       189 ~~gr~~~~~~~~~--~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~  261 (332)
                      =.-.+.+...+..  ......+++-.+..   +-|              --++.+|++..+.++| |.+-.+-..
T Consensus       275 E~V~p~e~~~dd~~s~v~~~~d~lm~~~~---~~G--------------kert~~e~q~l~~~~g-F~~~~~~~~  331 (342)
T KOG3178|consen  275 ENVTPEEDKFDDIDSSVTRDMDLLMLTQT---SGG--------------KERTLKEFQALLPEEG-FPVCMVALT  331 (342)
T ss_pred             eccCCCCCCccccccceeehhHHHHHHHh---ccc--------------eeccHHHHHhcchhhc-CceeEEEec
Confidence            5433322211110  11211222222222   113              2478999999999999 887666544

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=92.66  E-value=7.3  Score=37.51  Aligned_cols=60  Identities=22%  Similarity=0.364  Sum_probs=41.6

Q ss_pred             HHHHHHHhhccCCeEEEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCccc--CCHHHHHHHHH
Q 044174          171 FLNARAEEIVSGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYS--ASSEEMVKLVD  248 (332)
Q Consensus       171 fL~~Ra~EL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~--ps~~E~~~~ie  248 (332)
                      -|+--+..|.|||.||.+.  .+-        +. -.+.|..+|.... +|           -||-+  +|.+|+.++++
T Consensus       231 sl~gl~~al~pgG~lIyTg--QPw--------HP-Qle~IAr~LtsHr-~g-----------~~WvMRrRsq~EmD~Lv~  287 (311)
T PF12147_consen  231 SLAGLARALEPGGYLIYTG--QPW--------HP-QLEMIARVLTSHR-DG-----------KAWVMRRRSQAEMDQLVE  287 (311)
T ss_pred             HHHHHHHHhCCCcEEEEcC--CCC--------Cc-chHHHHHHHhccc-CC-----------CceEEEecCHHHHHHHHH
Confidence            4566667888999998764  221        11 1357778877551 23           36766  68999999999


Q ss_pred             hCCceE
Q 044174          249 KNGHFS  254 (332)
Q Consensus       249 ~~G~F~  254 (332)
                      .+| |+
T Consensus       288 ~aG-F~  292 (311)
T PF12147_consen  288 AAG-FE  292 (311)
T ss_pred             HcC-Cc
Confidence            999 65

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=92.43  E-value=0.36  Score=47.12  Aligned_cols=115  Identities=15%  Similarity=0.254  Sum_probs=70.4

Q ss_pred             hHHHHHHHHHH-hhhhcccC--CCCCceEEEeecCCCCcchHHHHH------------HHHHHHHHhhhhcCCCCCCCce
Q 044174            7 VKEKIVDAITR-NLNVCELS--SASNIIRLADLGCAVGSNTINAMQ------------DVLEVIKNKCHSQCPSSKLPEF   71 (332)
Q Consensus         7 ~~~~l~~ai~~-~~~~~~~~--~~~~~~~iaD~GCs~G~ns~~~~~------------~ii~~i~~~~~~~~~~~~~~~~   71 (332)
                      ...||.+.++. .+...-..  ..-+.-+|+|.|||+|--|+..+.            .|++...+....++        
T Consensus        35 heeML~D~VRt~aYr~~i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~--------  106 (346)
T KOG1499|consen   35 HEEMLKDSVRTLAYRNAILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNG--------  106 (346)
T ss_pred             HHHHHhhhhhHHHHHHHHhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcC--------
Confidence            34566666642 22221111  134567999999999999988763            33333232222211        


Q ss_pred             EEEecCCCCCchHHHHhcCcccccceeeecCCccccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecC
Q 044174           72 QVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTN  151 (332)
Q Consensus        72 ~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~  151 (332)
                                 |           ..-+--+.|.-.+-.+|-..+|++.|-|-=+||-                       
T Consensus       107 -----------~-----------~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~Ll-----------------------  141 (346)
T KOG1499|consen  107 -----------L-----------EDVITVIKGKVEDIELPVEKVDIIVSEWMGYFLL-----------------------  141 (346)
T ss_pred             -----------c-----------cceEEEeecceEEEecCccceeEEeehhhhHHHH-----------------------
Confidence                       1           1234445666666678888999999965555543                       


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEE
Q 044174          152 AAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMV  186 (332)
Q Consensus       152 ~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mv  186 (332)
                                  +..=+...|-+|-+=|+|||.++
T Consensus       142 ------------~EsMldsVl~ARdkwL~~~G~i~  164 (346)
T KOG1499|consen  142 ------------YESMLDSVLYARDKWLKEGGLIY  164 (346)
T ss_pred             ------------HhhhhhhhhhhhhhccCCCceEc
Confidence                        23345567889999999999885

>PHA03412 putative methyltransferase; Provisional

Probab=92.30  E-value=0.57  Score=43.68  Aligned_cols=20  Identities=15%  Similarity=0.243  Sum_probs=16.8

Q ss_pred             ceEEEeecCCCCcchHHHHH
Q 044174           30 IIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~~   49 (332)
                      ..+|+|+|||+|.-++.++.
T Consensus        50 ~grVLDlG~GSG~Lalala~   69 (241)
T PHA03412         50 SGSVVDLCAGIGGLSFAMVH   69 (241)
T ss_pred             CCEEEEccChHHHHHHHHHH
Confidence            46999999999988877654

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=92.18  E-value=0.24  Score=51.01  Aligned_cols=115  Identities=13%  Similarity=0.154  Sum_probs=65.4

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcc--cccceeeecCCcc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQ--QREYYSAGVPGSF  105 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~--~~~~f~~~vpgSF  105 (332)
                      .+...++|+|||.|..++.++..                 .|+..++--|.-.+=...+.+....  -.++.+..--..+
T Consensus       346 ~~~p~~lEIG~G~G~~~~~~A~~-----------------~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~  408 (506)
T PRK01544        346 EKRKVFLEIGFGMGEHFINQAKM-----------------NPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDL  408 (506)
T ss_pred             CCCceEEEECCCchHHHHHHHHh-----------------CCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHH
Confidence            45789999999999988776531                 2333333333333322222222111  1133322112223


Q ss_pred             ccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeE
Q 044174          106 HHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMM  185 (332)
Q Consensus       106 y~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~m  185 (332)
                      ....||++|+|-+|-++.=-|=.+--           .|-++.    .               ..||+.=+.-|+|||.+
T Consensus       409 ~~~~~~~~sv~~i~i~FPDPWpKkrh-----------~krRl~----~---------------~~fl~~~~~~Lk~gG~i  458 (506)
T PRK01544        409 ILNDLPNNSLDGIYILFPDPWIKNKQ-----------KKKRIF----N---------------KERLKILQDKLKDNGNL  458 (506)
T ss_pred             HHHhcCcccccEEEEECCCCCCCCCC-----------cccccc----C---------------HHHHHHHHHhcCCCCEE
Confidence            45678999999999999888843311           122222    1               13566666788899999


Q ss_pred             EEEe
Q 044174          186 VIIM  189 (332)
Q Consensus       186 vl~~  189 (332)
                      .+.-
T Consensus       459 ~~~T  462 (506)
T PRK01544        459 VFAS  462 (506)
T ss_pred             EEEc
Confidence            8754

>PLN02672 methionine S-methyltransferase

Probab=91.76  E-value=0.5  Score=52.82  Aligned_cols=28  Identities=18%  Similarity=0.171  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHHhhccCCeEEEEeccc
Q 044174          165 AKDMENFLNARAEEIVSGGMMVIIMPGI  192 (332)
Q Consensus       165 ~~d~~~fL~~Ra~EL~pGG~mvl~~~gr  192 (332)
                      ..-.++++..=.+-|+|||.|+++++++
T Consensus       254 L~~yr~i~~~a~~~L~pgG~l~lEiG~~  281 (1082)
T PLN02672        254 LGLIARAVEEGISVIKPMGIMIFNMGGR  281 (1082)
T ss_pred             HHHHHHHHHHHHHhccCCCEEEEEECcc
Confidence            3444667777778899999999999864

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=91.35  E-value=2.3  Score=38.34  Aligned_cols=40  Identities=23%  Similarity=0.244  Sum_probs=24.6

Q ss_pred             hhhhhHHHHHHHHHHhhhhcccCCCCCceEEEeecCCCCcchHHHH
Q 044174            3 AADAVKEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAM   48 (332)
Q Consensus         3 ~~~~~~~~l~~ai~~~~~~~~~~~~~~~~~iaD~GCs~G~ns~~~~   48 (332)
                      |...+-.+|.+.|. .+...     ...-+|+|||||.|.--..+.
T Consensus        47 ae~riv~wl~d~~~-~~rv~-----~~A~~VlDLGtGNG~~L~~L~   86 (227)
T KOG1271|consen   47 AEERIVDWLKDLIV-ISRVS-----KQADRVLDLGTGNGHLLFQLA   86 (227)
T ss_pred             HHHHHHHHHHhhhh-hhhhc-----ccccceeeccCCchHHHHHHH
Confidence            34455667776665 33322     223499999999987655543

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=91.04  E-value=0.5  Score=44.52  Aligned_cols=82  Identities=16%  Similarity=0.214  Sum_probs=55.2

Q ss_pred             ceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEecccC
Q 044174          114 SIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIMPGIP  193 (332)
Q Consensus       114 svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~~~gr~  193 (332)
                      .+|.+.|+.||.=.++.++                                  .+++-|+.-+.-|||||.|++...-..
T Consensus       158 ~~D~v~s~fcLE~a~~d~~----------------------------------~y~~al~ni~~lLkpGG~Lil~~~l~~  203 (256)
T PF01234_consen  158 KFDCVISSFCLESACKDLD----------------------------------EYRRALRNISSLLKPGGHLILAGVLGS  203 (256)
T ss_dssp             SEEEEEEESSHHHH-SSHH----------------------------------HHHHHHHHHHTTEEEEEEEEEEEESS-
T ss_pred             chhhhhhhHHHHHHcCCHH----------------------------------HHHHHHHHHHHHcCCCcEEEEEEEcCc
Confidence            5999999999987776432                                  233345566678999999999876432


Q ss_pred             CCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEE
Q 044174          194 YGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVEL  260 (332)
Q Consensus       194 ~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~  260 (332)
                      +.  +   ..                         ..-.+|.+.-+.+.+++.|+++| |.|...+.
T Consensus       204 t~--Y---~v-------------------------G~~~F~~l~l~ee~v~~al~~aG-~~i~~~~~  239 (256)
T PF01234_consen  204 TY--Y---MV-------------------------GGHKFPCLPLNEEFVREALEEAG-FDIEDLEK  239 (256)
T ss_dssp             SE--E---EE-------------------------TTEEEE---B-HHHHHHHHHHTT-EEEEEEEG
T ss_pred             ee--E---EE-------------------------CCEecccccCCHHHHHHHHHHcC-CEEEeccc
Confidence            21  0   01                         11236888889999999999999 99999883

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>PRK01581 speE spermidine synthase; Validated

Probab=90.49  E-value=1.7  Score=43.05  Aligned_cols=22  Identities=18%  Similarity=0.120  Sum_probs=17.1

Q ss_pred             CCCceEEEeecCCCCcchHHHH
Q 044174           27 ASNIIRLADLGCAVGSNTINAM   48 (332)
Q Consensus        27 ~~~~~~iaD~GCs~G~ns~~~~   48 (332)
                      .+++-+|+++|||+|.....++
T Consensus       148 h~~PkrVLIIGgGdG~tlrelL  169 (374)
T PRK01581        148 VIDPKRVLILGGGDGLALREVL  169 (374)
T ss_pred             CCCCCEEEEECCCHHHHHHHHH
Confidence            4566799999999998655554

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=90.20  E-value=2.1  Score=37.53  Aligned_cols=36  Identities=22%  Similarity=0.206  Sum_probs=23.8

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCC
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTS   80 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~   80 (332)
                      ....+|++||||+|--++.+...        .         ..-.|+++|++.
T Consensus        44 ~~~~~VLELGaG~Gl~gi~~a~~--------~---------~~~~Vv~TD~~~   79 (173)
T PF10294_consen   44 FRGKRVLELGAGTGLPGIAAAKL--------F---------GAARVVLTDYNE   79 (173)
T ss_dssp             TTTSEEEETT-TTSHHHHHHHHT------------------T-SEEEEEE-S-
T ss_pred             cCCceEEEECCccchhHHHHHhc--------c---------CCceEEEeccch
Confidence            45679999999999888876543        0         134688888876

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=90.10  E-value=4.8  Score=39.13  Aligned_cols=23  Identities=22%  Similarity=0.417  Sum_probs=16.8

Q ss_pred             CCHHHHHHHHHhCCceEEeEEEE
Q 044174          238 ASSEEMVKLVDKNGHFSIKTVEL  260 (332)
Q Consensus       238 ps~~E~~~~ie~~G~F~I~~le~  260 (332)
                      .+.+++.+.+++.|.=.+..+|.
T Consensus       271 ~~l~~l~~~L~~~~~~~~~~~e~  293 (321)
T PRK11727        271 ENLPPLYRALKKVGAVEVKTIEM  293 (321)
T ss_pred             CCHHHHHHHHHHcCCceEEEEEE
Confidence            58999999999999434544543

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=89.82  E-value=3.4  Score=44.35  Aligned_cols=20  Identities=15%  Similarity=0.117  Sum_probs=17.6

Q ss_pred             ceEEEeecCCCCcchHHHHH
Q 044174           30 IIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~~   49 (332)
                      .-+|+|+||++|.-|+.++.
T Consensus       539 g~rVLDlf~gtG~~sl~aa~  558 (702)
T PRK11783        539 GKDFLNLFAYTGTASVHAAL  558 (702)
T ss_pred             CCeEEEcCCCCCHHHHHHHH
Confidence            35899999999999999873

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=89.35  E-value=4.2  Score=39.50  Aligned_cols=39  Identities=10%  Similarity=-0.035  Sum_probs=26.5

Q ss_pred             HHHHHHHHHhhhhcccCCCCCceEEEeecCCCCcchHHHHHHHH
Q 044174            9 EKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQDVL   52 (332)
Q Consensus         9 ~~l~~ai~~~~~~~~~~~~~~~~~iaD~GCs~G~ns~~~~~~ii   52 (332)
                      .+|++-..++...     .+...+|+|||||+|.=|-.+++.+.
T Consensus        61 ~iL~~~~~~Ia~~-----i~~~~~lIELGsG~~~Kt~~LL~aL~   99 (319)
T TIGR03439        61 EILKKHSSDIAAS-----IPSGSMLVELGSGNLRKVGILLEALE   99 (319)
T ss_pred             HHHHHHHHHHHHh-----cCCCCEEEEECCCchHHHHHHHHHHH
Confidence            3555544444433     24456899999999998888877654

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=89.26  E-value=0.83  Score=43.73  Aligned_cols=43  Identities=12%  Similarity=0.208  Sum_probs=27.2

Q ss_pred             CceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCC
Q 044174           29 NIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTS   80 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~   80 (332)
                      ++++|-..|||+|-=.-.++--+.+....         ....++|+-.|+-.
T Consensus       115 ~~irIWSAgCStGEEpYSlAmll~e~~~~---------~~~~~~I~atDIs~  157 (287)
T PRK10611        115 GEYRVWSAAASTGEEPYSIAMTLADTLGT---------APGRWKVFASDIDT  157 (287)
T ss_pred             CCEEEEEccccCCHHHHHHHHHHHHhhcc---------cCCCcEEEEEECCH
Confidence            46999999999997665554333332211         01257888888754

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=88.86  E-value=1.1  Score=42.09  Aligned_cols=50  Identities=10%  Similarity=0.158  Sum_probs=33.2

Q ss_pred             CceEEEeecCCCCcchHHHHHH------------HHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHH
Q 044174           29 NIIRLADLGCAVGSNTINAMQD------------VLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNT   85 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~~------------ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~   85 (332)
                      ..-+|+|+|||+|..|..+++.            .++.+++..       ..+.+++...|...-++..
T Consensus        42 ~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~-------~~~~v~~i~~D~~~~~~~~  103 (272)
T PRK00274         42 PGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETF-------AEDNLTIIEGDALKVDLSE  103 (272)
T ss_pred             CcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhh-------ccCceEEEEChhhcCCHHH
Confidence            3468999999999999988753            333333321       1145778888776655544

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=87.01  E-value=0.74  Score=45.05  Aligned_cols=149  Identities=17%  Similarity=0.216  Sum_probs=82.1

Q ss_pred             CceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcC-cc-cccceeeecCCccc
Q 044174           29 NIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSL-PQ-QREYYSAGVPGSFH  106 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l-~~-~~~~f~~~vpgSFy  106 (332)
                      ..-.|+|.|||+|-.|+..+++=-..|.+...+                    .-..-.+.| .. .-.-.+..+||--.
T Consensus       177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS--------------------~MAqyA~~Lv~~N~~~~rItVI~GKiE  236 (517)
T KOG1500|consen  177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS--------------------EMAQYARKLVASNNLADRITVIPGKIE  236 (517)
T ss_pred             CCcEEEEecCCccHHHHHHHHhCcceEEEEehh--------------------HHHHHHHHHHhcCCccceEEEccCccc
Confidence            346789999999999999876532222111000                    000001111 11 11346778888887


Q ss_pred             cCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEE
Q 044174          107 HRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMV  186 (332)
Q Consensus       107 ~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mv  186 (332)
                      +--+|. .+|+++|         -|-+            .+-+              -++=+..+|.+| +=|+|.|.|+
T Consensus       237 dieLPE-k~DviIS---------EPMG------------~mL~--------------NERMLEsYl~Ar-k~l~P~GkMf  279 (517)
T KOG1500|consen  237 DIELPE-KVDVIIS---------EPMG------------YMLV--------------NERMLESYLHAR-KWLKPNGKMF  279 (517)
T ss_pred             cccCch-hccEEEe---------ccch------------hhhh--------------hHHHHHHHHHHH-hhcCCCCccc
Confidence            777765 5888888         3422            2211              135567888999 9999999999


Q ss_pred             EEecccCCCCCCCCcchhHHHHHHH---------------HHHHHHHHhhccchhhhcccCcCccc
Q 044174          187 IIMPGIPYGMPYSHLTNGVMYDLMA---------------TIFMELANEQLITEAELDSFNLPIYS  237 (332)
Q Consensus       187 l~~~gr~~~~~~~~~~~~~~~~~l~---------------~al~~mv~eGli~~e~~d~fn~P~y~  237 (332)
                      =+++-. .-.|.+.  .....+...               ..|..-+-+|+..+--+|.|.+-+..
T Consensus       280 PT~gdi-HlAPFsD--E~Ly~E~~nkAnFWyQq~fyGVdLt~L~g~a~~eYFrQPvVDtFD~Rilm  342 (517)
T KOG1500|consen  280 PTVGDI-HLAPFSD--EQLYVEQFNKANFWYQQNFYGVDLTPLYGSAHQEYFRQPVVDTFDIRILM  342 (517)
T ss_pred             Ccccce-eecccch--HHHHHHHHhhhhhhhhhccccccchhhhhhhhhhhhccccccccccceee
Confidence            877432 1112211  111112222               23333345577777777877766554

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=86.71  E-value=23  Score=33.70  Aligned_cols=176  Identities=20%  Similarity=0.308  Sum_probs=97.0

Q ss_pred             HHHHHHHHHHhhhhcccCCCCCceEEEeecCCCCcchHHHHHH-----------HH----HHHHHhhhhcCCCCCCCceE
Q 044174            8 KEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQD-----------VL----EVIKNKCHSQCPSSKLPEFQ   72 (332)
Q Consensus         8 ~~~l~~ai~~~~~~~~~~~~~~~~~iaD~GCs~G~ns~~~~~~-----------ii----~~i~~~~~~~~~~~~~~~~~   72 (332)
                      .+-|.+++.+.+....  ...+..+|+-=|||-|+-+..++..           .+    .-|-..+.      ..-++.
T Consensus        37 ~~~I~~~L~~~~p~~~--~~~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~fiLn~~~------~~~~~~  108 (270)
T PF07942_consen   37 YSPILDELESLFPPAG--SDRSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASNFILNHCS------QPNQFT  108 (270)
T ss_pred             HHHHHHHHHHhhcccc--cCCCccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHHHHHcccC------CCCcEE
Confidence            3445566666654221  1466799999999999999887621           00    11111111      122333


Q ss_pred             EE-ecCCCCCchH--HHHhcC--ccc-------ccceeeecCCccccCCcCC---CceeEEEecCccccccCCccccccC
Q 044174           73 VF-FNDKTSNDFN--TLFTSL--PQQ-------REYYSAGVPGSFHHRLFPQ---SSIHFAHCSYALHWLSKVPEELLDE  137 (332)
Q Consensus        73 v~-~nDlp~NDFn--~lf~~l--~~~-------~~~f~~~vpgSFy~~lfP~---~svd~~~S~~alHWLs~~P~~~~~~  137 (332)
                      ++ |.+..+|-.+  ..++.+  |+-       .+--.+++.|+|-.---++   +++|.|.+.+=+             
T Consensus       109 I~Pf~~~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFI-------------  175 (270)
T PF07942_consen  109 IYPFVHSFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFI-------------  175 (270)
T ss_pred             EecceecccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEe-------------
Confidence            32 2223333222  222221  211       1345678888888766666   688888884211             


Q ss_pred             CCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEecccCCCCCCCCcchhHHHHHHHHHHHHH
Q 044174          138 NSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMEL  217 (332)
Q Consensus       138 ~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~m  217 (332)
                                   .|            +++.-.+|..-.+-||||| ..+.++=..-+.           +       ++
T Consensus       176 -------------DT------------A~Ni~~Yi~tI~~lLkpgG-~WIN~GPLlyh~-----------~-------~~  211 (270)
T PF07942_consen  176 -------------DT------------AENIIEYIETIEHLLKPGG-YWINFGPLLYHF-----------E-------PM  211 (270)
T ss_pred             -------------ec------------hHHHHHHHHHHHHHhccCC-EEEecCCccccC-----------C-------CC
Confidence                         11            2455568888889999999 333332111100           0       00


Q ss_pred             HHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEE
Q 044174          218 ANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVEL  260 (332)
Q Consensus       218 v~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~  260 (332)
                         + +.       +-.....|.||++.++++-| |++++-+.
T Consensus       212 ---~-~~-------~~~sveLs~eEi~~l~~~~G-F~~~~~~~  242 (270)
T PF07942_consen  212 ---S-IP-------NEMSVELSLEEIKELIEKLG-FEIEKEES  242 (270)
T ss_pred             ---C-CC-------CCcccCCCHHHHHHHHHHCC-CEEEEEEE
Confidence               0 00       00115678999999999999 99987665

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=86.57  E-value=5.5  Score=36.80  Aligned_cols=36  Identities=8%  Similarity=0.015  Sum_probs=25.0

Q ss_pred             hHHHHHHHHHHhhhhcccCCCCCceEEEeecCCCCcchHHHHH
Q 044174            7 VKEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus         7 ~~~~l~~ai~~~~~~~~~~~~~~~~~iaD~GCs~G~ns~~~~~   49 (332)
                      ..|.|.+-+.++.       .+..-+|++-|||.|.+..-+++
T Consensus        28 pnp~L~~~~~~l~-------~~~~~rvLvPgCGkg~D~~~LA~   63 (226)
T PRK13256         28 PNEFLVKHFSKLN-------INDSSVCLIPMCGCSIDMLFFLS   63 (226)
T ss_pred             CCHHHHHHHHhcC-------CCCCCeEEEeCCCChHHHHHHHh
Confidence            3456655554421       13346999999999999998874

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=86.28  E-value=4.6  Score=36.39  Aligned_cols=45  Identities=18%  Similarity=0.337  Sum_probs=25.9

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCC
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTS   80 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~   80 (332)
                      ..+++|-..|||+|-=+-.++--+-+.....        ..-.++|+-+|+-.
T Consensus        30 ~~~lrIWSagCStGeE~YSlAmll~e~~~~~--------~~~~~~I~atDi~~   74 (196)
T PF01739_consen   30 GRPLRIWSAGCSTGEEPYSLAMLLLELLPGA--------LGWDFRILATDISP   74 (196)
T ss_dssp             -S-EEEEETT-TTTHHHHHHHHHHHHHH-S---------TT-SEEEEEEES-H
T ss_pred             CCCeEEEECCCCCChhHHHHHHHHHHHhccc--------CCCceEEEEEECCH
Confidence            4689999999999976665544333322211        12268888888743

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=86.19  E-value=0.89  Score=37.33  Aligned_cols=44  Identities=16%  Similarity=0.367  Sum_probs=33.5

Q ss_pred             eeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEec
Q 044174          115 IHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIMP  190 (332)
Q Consensus       115 vd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~~~  190 (332)
                      +|++.|.+..-|                    ||+            ...-..+.+|++.-++-|+|||+|+++--
T Consensus         2 yDvilclSVtkW--------------------IHL------------n~GD~Gl~~~f~~~~~~L~pGG~lilEpQ   45 (110)
T PF06859_consen    2 YDVILCLSVTKW--------------------IHL------------NWGDEGLKRFFRRIYSLLRPGGILILEPQ   45 (110)
T ss_dssp             EEEEEEES-HHH--------------------HHH------------HHHHHHHHHHHHHHHHHEEEEEEEEEE--
T ss_pred             ccEEEEEEeeEE--------------------EEe------------cCcCHHHHHHHHHHHHhhCCCCEEEEeCC
Confidence            688999888888                    554            33445677888889999999999999863

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=86.13  E-value=26  Score=32.03  Aligned_cols=27  Identities=33%  Similarity=0.605  Sum_probs=19.3

Q ss_pred             CcccCCHHHHHHHHHhCCceEEeEEEEeC
Q 044174          234 PIYSASSEEMVKLVDKNGHFSIKTVELTN  262 (332)
Q Consensus       234 P~y~ps~~E~~~~ie~~G~F~I~~le~~~  262 (332)
                      |=|.=+.+||++++. .+ |+|+.++..+
T Consensus       166 PPf~v~~~ev~~l~~-~~-f~i~~l~~~~  192 (218)
T PF05724_consen  166 PPFSVTEEEVRELFG-PG-FEIEELEEED  192 (218)
T ss_dssp             SS----HHHHHHHHT-TT-EEEEEEEEEE
T ss_pred             cCCCCCHHHHHHHhc-CC-cEEEEEeccc
Confidence            446668899999999 66 9999999754

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=85.96  E-value=2.1  Score=39.89  Aligned_cols=22  Identities=14%  Similarity=0.078  Sum_probs=18.7

Q ss_pred             CceEEEeecCCCCcchHHHHHH
Q 044174           29 NIIRLADLGCAVGSNTINAMQD   50 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~~   50 (332)
                      +.-+|+|+|||+|..|..+.+.
T Consensus        29 ~~~~VLEIG~G~G~lt~~L~~~   50 (258)
T PRK14896         29 DGDPVLEIGPGKGALTDELAKR   50 (258)
T ss_pred             CcCeEEEEeCccCHHHHHHHHh
Confidence            3478999999999999998753

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=85.27  E-value=1.6  Score=39.33  Aligned_cols=44  Identities=20%  Similarity=0.291  Sum_probs=29.5

Q ss_pred             ceEEEeecCCCCcchHHHH-------------HHHHHHHHHhhhhcCCCCCCCceEEEecCC
Q 044174           30 IIRLADLGCAVGSNTINAM-------------QDVLEVIKNKCHSQCPSSKLPEFQVFFNDK   78 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~-------------~~ii~~i~~~~~~~~~~~~~~~~~v~~nDl   78 (332)
                      .-+|+|+|||+|.-++...             ...++..++.+....     -.+.++-.|.
T Consensus        46 g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~-----g~v~f~~~dv  102 (198)
T COG2263          46 GKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL-----GDVEFVVADV  102 (198)
T ss_pred             CCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC-----CceEEEEcch
Confidence            4579999999999998876             456666666654422     2355555554

>TIGR00478 tly hemolysin TlyA family protein

Probab=83.11  E-value=1.1  Score=41.39  Aligned_cols=23  Identities=26%  Similarity=0.242  Sum_probs=19.0

Q ss_pred             CCceEEEeecCCCCcchHHHHHH
Q 044174           28 SNIIRLADLGCAVGSNTINAMQD   50 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~   50 (332)
                      .+.-+++|+|||+|.-|..+++.
T Consensus        74 ~~~~~vlDiG~gtG~~t~~l~~~   96 (228)
T TIGR00478        74 VKNKIVLDVGSSTGGFTDCALQK   96 (228)
T ss_pred             CCCCEEEEcccCCCHHHHHHHHc
Confidence            34569999999999999887654

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=83.00  E-value=2.9  Score=40.09  Aligned_cols=52  Identities=15%  Similarity=0.230  Sum_probs=34.4

Q ss_pred             CceEEEeecCCCCcchHHHHHH------------HHHHHHHhhhhcCCCCCCCceEEEecCCCCCch
Q 044174           29 NIIRLADLGCAVGSNTINAMQD------------VLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDF   83 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~~------------ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDF   83 (332)
                      ..-+|+|+|||.|.-|..++..            .++.+++.....+   ..+.++++..|....|+
T Consensus        36 ~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~---~~~~v~ii~~Dal~~~~   99 (294)
T PTZ00338         36 PTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSP---LASKLEVIEGDALKTEF   99 (294)
T ss_pred             CcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcC---CCCcEEEEECCHhhhcc
Confidence            3468999999999999888743            4555555443211   13458888887765443

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=82.98  E-value=13  Score=34.25  Aligned_cols=54  Identities=22%  Similarity=0.381  Sum_probs=35.4

Q ss_pred             ccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeE
Q 044174          106 HHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMM  185 (332)
Q Consensus       106 y~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~m  185 (332)
                      ...++|++|+|-++-++.==|=.+--           +|-++-.            .       .||+.=++-|+|||.+
T Consensus       111 l~~~~~~~sl~~I~i~FPDPWpKkRH-----------~KRRl~~------------~-------~fl~~~a~~Lk~gG~l  160 (227)
T COG0220         111 LDYLIPDGSLDKIYINFPDPWPKKRH-----------HKRRLTQ------------P-------EFLKLYARKLKPGGVL  160 (227)
T ss_pred             HHhcCCCCCeeEEEEECCCCCCCccc-----------cccccCC------------H-------HHHHHHHHHccCCCEE
Confidence            34566777999999998888833311           2334321            1       3566666778899999


Q ss_pred             EEEe
Q 044174          186 VIIM  189 (332)
Q Consensus       186 vl~~  189 (332)
                      .+..
T Consensus       161 ~~aT  164 (227)
T COG0220         161 HFAT  164 (227)
T ss_pred             EEEe
Confidence            8865

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=82.44  E-value=23  Score=33.65  Aligned_cols=44  Identities=16%  Similarity=0.200  Sum_probs=30.7

Q ss_pred             CceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCC
Q 044174           29 NIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTS   80 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~   80 (332)
                      ++++|--.|||+|-=.-.++-.+.+.....        .+..++|+-.|.-.
T Consensus        96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~--------~~~~~~I~AtDId~  139 (268)
T COG1352          96 RPIRIWSAACSTGEEPYSLAMLLLEALGKL--------AGFRVKILATDIDL  139 (268)
T ss_pred             CceEEEecCcCCCccHHHHHHHHHHHhccc--------cCCceEEEEEECCH
Confidence            689999999999977666554444443320        24579999999743

>TIGR00755 ksgA dimethyladenosine transferase

Probab=81.90  E-value=5.2  Score=37.06  Aligned_cols=21  Identities=14%  Similarity=0.148  Sum_probs=18.0

Q ss_pred             CceEEEeecCCCCcchHHHHH
Q 044174           29 NIIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~   49 (332)
                      +.-+|+|+|||+|..|..+.+
T Consensus        29 ~~~~VLEiG~G~G~lt~~L~~   49 (253)
T TIGR00755        29 EGDVVLEIGPGLGALTEPLLK   49 (253)
T ss_pred             CcCEEEEeCCCCCHHHHHHHH
Confidence            357899999999999988864

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PRK11524 putative methyltransferase; Provisional

Probab=81.33  E-value=3.3  Score=39.25  Aligned_cols=22  Identities=14%  Similarity=0.286  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHhhccCCeEEEEe
Q 044174          168 MENFLNARAEEIVSGGMMVIIM  189 (332)
Q Consensus       168 ~~~fL~~Ra~EL~pGG~mvl~~  189 (332)
                      +..+|+.=.+-|||||.|++..
T Consensus        59 l~~~l~~~~rvLK~~G~i~i~~   80 (284)
T PRK11524         59 LYEWIDECHRVLKKQGTMYIMN   80 (284)
T ss_pred             HHHHHHHHHHHhCCCcEEEEEc
Confidence            4566666678899999999964

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	332
3b5i_A	374	Crystal Structure Of Indole-3-Acetic Acid Methyltra		3e-44
2eg5_A	372	The Structure Of Xanthosine Methyltransferase Lengt		2e-39
1m6e_X	359	Crystal Structure Of Salicylic Acid Carboxyl Methyl		4e-39
2efj_A	384	The Structure Of 1,7 Dimethylxanthine Methyltransfe		4e-37

>pdb|3B5I|A Chain A, Crystal Structure Of Indole-3-Acetic Acid Methyltransferase Length = 374

Iteration: 1
 Score =  175 bits (443), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 99/295 (33%), Positives = 153/295 (51%), Gaps = 24/295 (8%)
Query: 35  DLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLP--- 91
           DLGC+ G+NT++ +  +++ I  +  +       PEF  FF+D  SNDFNTLF  LP   
Sbjct: 58  DLGCSSGANTVHIIDFIVKHISKRFDAA--GIDPPEFTAFFSDLPSNDFNTLFQLLPPLV 115
Query: 92  ------------QQREYYSAGVPGSFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENS 139
                         R Y+ AGVPGSF+ RLFP  +I F H +++LHWLS+VPE + D  S
Sbjct: 116 SNTCMEECLAADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRS 175
Query: 140 PAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIMPGIPYGMPYS 199
            A+N+GR+    A E+   AY  QF  D+  FL ARA E+  GG M ++  G     P  
Sbjct: 176 AAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGRTSVDPTD 235
Query: 200 HLTNGVMYDL-MATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTV 258
               G+++       + +L  E L+   + D FN+P+Y+ S ++  ++VD NG F+I  +
Sbjct: 236 QGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFAIDKL 295
Query: 259 ELTNPTSWL--EGPIDI----KAWTMHVRAAMEAMFSKHFRIEIIDEMFNRLIRR 307
            +    S L    P D     +A+    R+    +   H   E+ +++F+R+  R
Sbjct: 296 VVYKGGSPLVVNEPDDASEVGRAFASSCRSVAGVLVEAHIGEELSNKLFSRVESR 350

>pdb|2EG5|A Chain A, The Structure Of Xanthosine Methyltransferase Length = 372

Iteration: 1
 Score =  159 bits (403), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 108/316 (34%), Positives = 159/316 (50%), Gaps = 27/316 (8%)
Query: 11  IVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPE 70
           +++   R L    L + +  I++ADLGCA G NT+  ++D+++ I      +    + P 
Sbjct: 35  VLEQCVRELLRANLPNINKCIKVADLGCASGPNTLLTVRDIVQSIDKVGQEKKNELERPT 94
Query: 71  FQVFFNDKTSNDFNTLFTSLPQ---------QREYYS---AGVPGSFHHRLFPQSSIHFA 118
            Q+F ND   NDFN++F  LP           R+  S     +PGSF+ RLFP+ S+HF 
Sbjct: 95  IQIFLNDLFPNDFNSVFKLLPSFYRKLEKENGRKIGSCLIGAMPGSFYSRLFPEESMHFL 154
Query: 119 HCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAE-EVVNAYASQFAKDMENFLNARAE 177
           H  Y L WLS+VP  L+ E     NKG I+ + A+   V  AY  QF KD   FL   +E
Sbjct: 155 HSCYCLQWLSQVPSGLVTELGIGTNKGSIYSSKASRLPVQKAYLDQFTKDFTTFLRIHSE 214
Query: 178 EIVSGGMMVI--IMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPI 235
           E+ S G M++  I  G+        L      DL+     +L  E  + E +LDSFNLP+
Sbjct: 215 ELFSHGRMLLTCICKGV-------ELDARNAIDLLEMAINDLVVEGHLEEEKLDSFNLPV 267
Query: 236 YSASSEEMVKLVDKNGHFSIKTVELTNPTSWLEGPID---IKAWTM--HVRAAMEAMFSK 290
           Y  S+EE+  +V++ G F I  +E           ID   IKA  +   VRA  E + + 
Sbjct: 268 YIPSAEEVKCIVEEEGSFEILYLETFKVLYDAGFSIDDEHIKAEYVASSVRAVYEPILAS 327
Query: 291 HFRIEIIDEMFNRLIR 306
           HF   II ++F+R  +
Sbjct: 328 HFGEAIIPDIFHRFAK 343

>pdb|1M6E|X Chain X, Crystal Structure Of Salicylic Acid Carboxyl Methyltransferase (Samt) Length = 359

Iteration: 1
 Score =  158 bits (399), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 104/318 (32%), Positives = 170/318 (53%), Gaps = 33/318 (10%)
Query: 33  LADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQ 92
           +ADLGC+ G N + A+ ++++ ++ +   +      PE+Q+F ND   NDFN +F SLP 
Sbjct: 55  IADLGCSSGPNALFAVTELIKTVE-ELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPI 113
Query: 93  QREY----YSAGVPGSFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIH 148
           + +     +  GVPGSF+ RLFP++++HF H SY+L WLS+VP  +        NKG I+
Sbjct: 114 ENDVDGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGI------ESNKGNIY 167
Query: 149 YTNAA-EEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIMPGIPYGMPYSHLTNGVMY 207
             N   + V+NAY  QF +D   FL  RA+E+V GG MV+ + G       +     +++
Sbjct: 168 MANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILG-RRSEDRASTECCLIW 226
Query: 208 DLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELTNPTSWL 267
            L+A    ++ +E LI E ++D FN+P Y+ S  E+   + K G F I  +E +    W 
Sbjct: 227 QLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASE-IYWS 285
Query: 268 E--------GPIDIKAWTMH--VRAAMEAMFSKHFRIEIIDEMFNRLIRRLFEFSDKVES 317
                    G ++ + + +   +RA  E +   HF   II+++F+R    +      +E 
Sbjct: 286 SCTKDGDGGGSVEEEGYNVARCMRAVAEPLLLDHFGEAIIEDVFHRYKLLI------IER 339
Query: 318 GYKEKTQ---LFVILMRK 332
             KEKT+   + V L+RK
Sbjct: 340 MSKEKTKFINVIVSLIRK 357

>pdb|2EFJ|A Chain A, The Structure Of 1,7 Dimethylxanthine Methyltransferase Length = 384

Iteration: 1
 Score =  151 bits (382), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 104/331 (31%), Positives = 163/331 (49%), Gaps = 48/331 (14%)
Query: 9   EKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKL 68
           ++++ A   N+N C         ++ DLGCA G NT + ++D+++ I      +    + 
Sbjct: 40  QELLRANLPNINKC--------FKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELER 91
Query: 69  PEFQVFFNDKTSNDFNTLFTSLP---------QQREYYS---AGVPGSFHHRLFPQSSIH 116
           P  Q+F ND   NDFN++F  LP           R+  S     +PGSF+ RLFP+ S+H
Sbjct: 92  PTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCLIGAMPGSFYSRLFPEESMH 151
Query: 117 FAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVN-AYASQFAKDMENFLNAR 175
           F H  Y LHWLS+VP  L+ E   + NKG I+ + A+   +  AY  QF KD   FL   
Sbjct: 152 FLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIH 211
Query: 176 AEEIVSGGMMVI--IMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNL 233
           +EE++S G M++  I     +  P S        DL+     +L  E  + E +LDSFN+
Sbjct: 212 SEELISRGRMLLTFICKEDEFDHPNS-------MDLLEMSINDLVIEGHLEEEKLDSFNV 264
Query: 234 PIYSASSEEMVKLVDKNGHFSIKTVELTNP------------TSWLEGPI--DIKAWTMH 279
           PIY+ S+EE+ ++V++ G F I  +E  N                   P+  D  A   H
Sbjct: 265 PIYAPSTEEVKRIVEEEGSFEILYLETFNAPYDAGFSIDDDYQGRSHSPVSCDEHARAAH 324
Query: 280 ----VRAAMEAMFSKHFRIEIIDEMFNRLIR 306
               VR+  E + + HF   I+ ++ +R+ +
Sbjct: 325 VASVVRSIYEPILASHFGEAILPDLSHRIAK 355

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	332
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	3e-84
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	2e-82
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	4e-80

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} Length = 374

 Score =  258 bits (660), Expect = 3e-84
 Identities = 100/352 (28%), Positives = 162/352 (46%), Gaps = 30/352 (8%)

Query: 1   RLAADAVKEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQDVLEVIKNKCH 60
            + A ++   + + +         S++       DLGC+ G+NT++ +  +++ I  +  
Sbjct: 26  AMHARSMLHLLEETLENVH--LNSSASPPPFTAVDLGCSSGANTVHIIDFIVKHISKRFD 83

Query: 61  SQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQRE---------------YYSAGVPGSF 105
           +       PEF  FF+D  SNDFNTLF  LP                   Y+ AGVPGSF
Sbjct: 84  AAGIDP--PEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSYFVAGVPGSF 141

Query: 106 HHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFA 165
           + RLFP  +I F H +++LHWLS+VPE + D  S A+N+GR+    A E+   AY  QF 
Sbjct: 142 YRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQ 201

Query: 166 KDMENFLNARAEEIVSGGMMVIIMPGIPYGMPYSHLTNG-VMYDLMATIFMELANEQLIT 224
            D+  FL ARA E+  GG M ++  G     P      G +        + +L  E L+ 
Sbjct: 202 ADLAEFLRARAAEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVA 261

Query: 225 EAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVEL--TNPTSWLEGPIDIKA----WTM 278
             + D FN+P+Y+ S ++  ++VD NG F+I  + +        +  P D       +  
Sbjct: 262 AEKRDGFNIPVYAPSLQDFKEVVDANGSFAIDKLVVYKGGSPLVVNEPDDASEVGRAFAS 321

Query: 279 HVRAAMEAMFSKHFRIEIIDEMFNRLIRRLFEFSDKVESGYKEKTQLFVILM 330
             R+    +   H   E+ +++F+R+  R    +           Q F I+ 
Sbjct: 322 SCRSVAGVLVEAHIGEELSNKLFSRVESRATSHAKD----VLVNLQFFHIVA 369

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* Length = 384

 Score =  254 bits (649), Expect = 2e-82
 Identities = 102/361 (28%), Positives = 164/361 (45%), Gaps = 40/361 (11%)

Query: 3   AADAVKEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQ 62
               VK  +   I + L    L + +   ++ DLGCA G NT + ++D+++ I      +
Sbjct: 27  FLIRVKPVLEQCI-QELLRANLPNINKCFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEK 85

Query: 63  CPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQRE------------YYSAGVPGSFHHRLF 110
               + P  Q+F ND   NDFN++F  LP                     +PGSF+ RLF
Sbjct: 86  KNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCLIGAMPGSFYSRLF 145

Query: 111 PQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAA-EEVVNAYASQFAKDME 169
           P+ S+HF H  Y LHWLS+VP  L+ E   + NKG I+ + A+   +  AY  QF KD  
Sbjct: 146 PEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFT 205

Query: 170 NFLNARAEEIVSGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELD 229
            FL   +EE++S G M++          + +       DL+     +L  E  + E +LD
Sbjct: 206 TFLRIHSEELISRGRMLLTFICKEDEFDHPN-----SMDLLEMSINDLVIEGHLEEEKLD 260

Query: 230 SFNLPIYSASSEEMVKLVDKNGHFSIKTVELTNPTSWLEGPID----------------- 272
           SFN+PIY+ S+EE+ ++V++ G F I  +E  N        ID                 
Sbjct: 261 SFNVPIYAPSTEEVKRIVEEEGSFEILYLETFNAPYDAGFSIDDDYQGRSHSPVSCDEHA 320

Query: 273 -IKAWTMHVRAAMEAMFSKHFRIEIIDEMFNRLIRRLFEFSDKVESGYKEKTQLFVILMR 331
                   VR+  E + + HF   I+ ++ +R+ +     +  + SG      + + L +
Sbjct: 321 RAAHVASVVRSIYEPILASHFGEAILPDLSHRIAKNA---AKVLRSGKGFYDSVIISLAK 377

Query: 332 K 332
           K
Sbjct: 378 K 378

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 Length = 359

 Score =  247 bits (631), Expect = 4e-80
 Identities = 100/346 (28%), Positives = 165/346 (47%), Gaps = 28/346 (8%)

Query: 1   RLAADAVKEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQDVLEVIKNKCH 60
           R      K     AIT    +    + +  + +ADLGC+ G N + A+ ++++ ++    
Sbjct: 26  RQVISITKPITEAAIT---ALYSGDTVTTRLAIADLGCSSGPNALFAVTELIKTVEELRK 82

Query: 61  SQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQRE----YYSAGVPGSFHHRLFPQSSIH 116
                +  PE+Q+F ND   NDFN +F SLP + +     +  GVPGSF+ RLFP++++H
Sbjct: 83  KMGRENS-PEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYGRLFPRNTLH 141

Query: 117 FAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARA 176
           F H SY+L WLS+VP  +       +           + V+NAY  QF +D   FL  RA
Sbjct: 142 FIHSSYSLMWLSQVPIGIESNKGNIYMAN-----TCPQSVLNAYYKQFQEDHALFLRCRA 196

Query: 177 EEIVSGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIY 236
           +E+V GG MV+ + G       S     +++ L+A    ++ +E LI E ++D FN+P Y
Sbjct: 197 QEVVPGGRMVLTILGRRSEDRAST-ECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQY 255

Query: 237 SASSEEMVKLVDKNGHFSIKTVELTNPTSWLEGPIDIKA----------WTMHVRAAMEA 286
           + S  E+   + K G F I  +E +    W     D                 +RA  E 
Sbjct: 256 TPSPTEVEAEILKEGSFLIDHIEAS-EIYWSSCTKDGDGGGSVEEEGYNVARCMRAVAEP 314

Query: 287 MFSKHFRIEIIDEMFNRLIRRLFEFSDKVESGYKEKTQLFVILMRK 332
           +   HF   II+++F+R    +    +++     +   + V L+RK
Sbjct: 315 LLLDHFGEAIIEDVFHRYKLLI---IERMSKEKTKFINVIVSLIRK 357

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	332
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	100.0
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	100.0
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	100.0
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.46
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.35
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.29
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.24
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.16
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.14
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.14
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.09
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.06
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.03
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.03
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.0
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.0
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	98.97
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	98.97
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	98.93
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	98.93
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	98.93
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	98.91
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	98.89
3ege_A	261	Putative methyltransferase from antibiotic biosyn	98.88
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	98.87
1xxl_A	239	YCGJ protein; structural genomics, protein structu	98.86
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	98.85
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	98.84
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	98.84
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	98.83
3lcc_A	235	Putative methyl chloride transferase; halide methy	98.83
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	98.82
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	98.82
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	98.81
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	98.8
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	98.78
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	98.78
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	98.76
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	98.76
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	98.75
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	98.74
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	98.74
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	98.74
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	98.72
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	98.71
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	98.71
3cc8_A	230	Putative methyltransferase; structural genomics, j	98.7
2p7i_A	250	Hypothetical protein; putative methyltransferase,	98.7
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	98.69
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	98.68
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	98.68
3ocj_A	305	Putative exported protein; structural genomics, PS	98.68
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	98.67
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	98.67
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	98.67
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	98.67
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	98.67
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	98.66
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	98.66
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	98.65
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	98.62
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	98.6
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	98.59
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	98.58
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	98.57
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	98.57
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	98.57
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	98.55
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	98.54
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	98.52
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	98.52
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	98.5
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	98.5
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	98.48
3i9f_A	170	Putative type 11 methyltransferase; structural gen	98.47
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	98.46
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	98.45
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	98.44
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	98.42
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	98.42
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.41
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	98.41
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	98.4
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	98.39
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	98.38
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	98.38
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	98.37
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	98.37
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	98.36
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	98.35
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	98.34
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	98.34
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	98.31
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	98.29
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	98.26
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	98.25
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	98.17
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	98.12
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	98.11
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	98.09
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	98.08
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.08
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	98.08
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	98.03
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	98.02
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	98.01
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	97.98
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	97.97
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	97.96
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	97.96
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	97.94
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	97.91
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	97.89
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	97.89
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	97.88
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	97.87
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	97.84
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	97.84
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	97.84
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	97.81
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	97.8
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	97.79
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	97.75
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	97.74
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	97.7
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	97.68
2b3t_A	276	Protein methyltransferase HEMK; translation termin	97.65
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	97.62
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	97.61
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	97.6
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	97.6
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	97.58
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	97.56
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	97.54
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	97.54
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	97.53
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	97.52
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	97.51
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	97.46
2b25_A	336	Hypothetical protein; structural genomics, methyl	97.45
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	97.44
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	97.44
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	97.43
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	97.42
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	97.4
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	97.4
3sso_A	419	Methyltransferase; macrolide, natural product, ros	97.38
2esr_A	177	Methyltransferase; structural genomics, hypothetic	97.36
3lpm_A	259	Putative methyltransferase; structural genomics, p	97.35
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	97.34
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	97.34
1ws6_A	171	Methyltransferase; structural genomics, riken stru	97.33
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	97.32
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	97.29
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	97.28
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	97.27
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	97.26
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	97.26
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	97.23
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	97.2
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	97.2
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	97.17
2h00_A	254	Methyltransferase 10 domain containing protein; st	97.16
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	97.15
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	97.12
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	97.11
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	97.1
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	97.09
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	97.08
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	97.07
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	97.07
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	97.07
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	97.05
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	97.04
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	97.0
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	96.99
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	96.98
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	96.97
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	96.95
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	96.94
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	96.94
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	96.9
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	96.9
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	96.9
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	96.89
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	96.88
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	96.87
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	96.83
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	96.8
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	96.8
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	96.8
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	96.79
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	96.79
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	96.76
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	96.74
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	96.67
2frn_A	278	Hypothetical protein PH0793; structural genomics,	96.66
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	96.64
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	96.61
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	96.54
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	96.53
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	96.53
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	96.47
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	96.45
2o07_A	304	Spermidine synthase; structural genomics, structur	96.42
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	96.39
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	96.34
2pt6_A	321	Spermidine synthase; transferase, structural genom	96.32
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	96.3
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	96.21
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	96.16
2i7c_A	283	Spermidine synthase; transferase, structural genom	96.11
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	96.11
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	96.09
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	96.02
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	96.02
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	96.01
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	95.89
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	95.75
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	95.73
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	95.71
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	95.71
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	95.65
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	95.41
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	95.39
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	95.37
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	95.34
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	95.3
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	95.3
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	95.27
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	95.21
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	95.21
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	95.11
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	95.01
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	94.89
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	94.74
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	94.54
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	94.51
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	94.31
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	94.26
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	94.16
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	94.08
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	93.88
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	93.87
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	93.82
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	93.71
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	93.42
2qm3_A	373	Predicted methyltransferase; putative methyltransf	93.2
3khk_A	544	Type I restriction-modification system methylation	93.1
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	92.97
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	92.37
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	91.89
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	91.86
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	91.1
3lkd_A	542	Type I restriction-modification system methyltrans	90.76
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	89.19
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	89.06
2zig_A	297	TTHA0409, putative modification methylase; methylt	88.86
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	88.78
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	88.06
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	87.54
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	86.72
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	86.53
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	85.68
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	85.28
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	85.27
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	84.58
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	84.19
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	83.44
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	82.17

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=100.00  E-value=4.5e-89  Score=667.36  Aligned_cols=321  Identities=32%  Similarity=0.515  Sum_probs=278.4

Q ss_pred             ChhhhhhHHHHHHHHHHhhhhcccCCCCCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCC
Q 044174            1 RLAADAVKEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTS   80 (332)
Q Consensus         1 ~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~   80 (332)
                      |+++..++|++++||.+++... .|...++++|||||||+|+||+.+++.||++|+++|.+.+...++|+|||||||||+
T Consensus        25 ~~~~~~~~~~~~~ai~~l~~~~-~~~~~~~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~  103 (384)
T 2efj_A           25 NLFLIRVKPVLEQCIQELLRAN-LPNINKCFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQ  103 (384)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHTT-CTTTTTEEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTT
T ss_pred             HHHHHHHHHHHHHHHHHhhhcc-cCCcCCceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCc
Confidence            5788999999999999988643 211123899999999999999999999999999988652111357899999999999


Q ss_pred             CchHHHHhcCccc------------ccceeeecCCccccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCcee
Q 044174           81 NDFNTLFTSLPQQ------------REYYSAGVPGSFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIH  148 (332)
Q Consensus        81 NDFn~lf~~l~~~------------~~~f~~~vpgSFy~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~  148 (332)
                      ||||+||++||.+            .+||++|||||||+||||++|+|+|||++||||||++|+.+.+..+++||||+||
T Consensus       104 NDFN~lF~~L~~~~~~~~~~~g~~~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~  183 (384)
T 2efj_A          104 NDFNSVFKLLPSFYRNLEKENGRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIY  183 (384)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHTCCCTTSEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSS
T ss_pred             cchHHHHhhhhhhHhhhhhhccCCCCceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceE
Confidence            9999999999852            3699999999999999999999999999999999999999999999999999999


Q ss_pred             ecCC-CHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEecccCCC--CCCCCcchhHHHHHHHHHHHHHHHhhccch
Q 044174          149 YTNA-AEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIMPGIPYG--MPYSHLTNGVMYDLMATIFMELANEQLITE  225 (332)
Q Consensus       149 ~~~~-~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~~~gr~~~--~~~~~~~~~~~~~~l~~al~~mv~eGli~~  225 (332)
                      |+++ |++|.+||++||++||..||++|++||||||+||++++|+++.  ++.++       +.+.++|++||.+|+|++
T Consensus       184 i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra~eL~pGG~mvl~~~gr~~~~~~~~~~-------~~l~~al~~lv~eGli~~  256 (384)
T 2efj_A          184 SSKASRPPIQKAYLDQFTKDFTTFLRIHSEELISRGRMLLTFICKEDEFDHPNSM-------DLLEMSINDLVIEGHLEE  256 (384)
T ss_dssp             SCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECCCTTTCCCCHH-------HHHHHHHHHHHHHTSSCH
T ss_pred             ecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEEEecCCCcccCcccH-------HHHHHHHHHHHHhCCcch
Confidence            9999 8999999999999999999999999999999999999999997  65432       399999999999999999


Q ss_pred             hhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEeC-CCCCC---CC--------------CccHHHHHHHHHHHHhhH
Q 044174          226 AELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELTN-PTSWL---EG--------------PIDIKAWTMHVRAAMEAM  287 (332)
Q Consensus       226 e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~-p~~~~---~~--------------~~~~~~~a~~iRa~~epl  287 (332)
                      +++|+||+|||+||++||+++|+++|+|+|+++|+++ +....   ++              ...|+.+++++||++||+
T Consensus       257 ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~le~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~~~a~~iRa~~epl  336 (384)
T 2efj_A          257 EKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLETFNAPYDAGFSIDDDYQGRSHSPVSCDEHARAAHVASVVRSIYEPI  336 (384)
T ss_dssp             HHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEEEEEEEETTTTCCC---------CCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcccCCcccCCCHHHHHHHHHHcCCceEEEEEEEeecccccccccccccccccccccchHhHhHHHhhhhhHHhhhhh
Confidence            9999999999999999999999999999999999886 21111   11              246789999999999999


Q ss_pred             HHhhhCHHHHHHHHHHHHHHHHhchhhhhcCCcceEEEEEEEEeC
Q 044174          288 FSKHFRIEIIDEMFNRLIRRLFEFSDKVESGYKEKTQLFVILMRK  332 (332)
Q Consensus       288 l~~hfg~~i~delf~r~~~~v~~~l~~~~~~~~~~~~~~~~L~r~  332 (332)
                      |.+|||++|+|+||+||++++++++..   ++.++++++++|+||
T Consensus       337 l~~hfG~~i~d~lF~ry~~~~~~~~~~---~~~~~~~~~~~L~k~  378 (384)
T 2efj_A          337 LASHFGEAILPDLSHRIAKNAAKVLRS---GKGFYDSVIISLAKK  378 (384)
T ss_dssp             HHHHHCSTTHHHHHHHHHHHHHHHHHH---TCCEEEEEEEEEEEC
T ss_pred             hHHhccHHHHHHHHHHHHHHHHHHHhh---CCCceEEEEEEEEEc
Confidence            999999999999999999999999887   788899999999996

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=100.00  E-value=8.1e-90  Score=667.65  Aligned_cols=318  Identities=33%  Similarity=0.525  Sum_probs=290.9

Q ss_pred             ChhhhhhHHHHHHHHHHhhhhcccCCCCCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCC
Q 044174            1 RLAADAVKEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTS   80 (332)
Q Consensus         1 ~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~   80 (332)
                      |+++..+||++++||.+++....   .+++++|||||||+|+||+.+++.||++|+++|.+.+. .++|+|||||||||+
T Consensus        26 ~~~~~~~~~~l~~ai~~~~~~~~---~~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~-~~~pe~~v~~nDLp~  101 (359)
T 1m6e_X           26 RQVISITKPITEAAITALYSGDT---VTTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGR-ENSPEYQIFLNDLPG  101 (359)
T ss_dssp             HHHHHHTHHHHHHHHHHHHSSSS---SSSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSC-SSCCEEEEEEEECTT
T ss_pred             HHHHHHHHHHHHHHHHHHhhccC---CCCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCC-CCCCceEEEecCCCc
Confidence            46889999999999999876321   37789999999999999999999999999999976541 147899999999999


Q ss_pred             CchHHHHhcCccc----ccceeeecCCccccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCC-CHH
Q 044174           81 NDFNTLFTSLPQQ----REYYSAGVPGSFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNA-AEE  155 (332)
Q Consensus        81 NDFn~lf~~l~~~----~~~f~~~vpgSFy~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~-~~~  155 (332)
                      ||||+||++|+.+    .+||++|||||||+||||++|+|++||++||||||++|+.+.+      |||+||++++ |++
T Consensus       102 NDFntlF~~L~~~~~~~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~------nkg~i~~~~~~p~~  175 (359)
T 1m6e_X          102 NDFNAIFRSLPIENDVDGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIES------NKGNIYMANTCPQS  175 (359)
T ss_dssp             SCHHHHHTTTTTSCSCTTCEEEEEEESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCC------CTTTTSSCSSSCCT
T ss_pred             hHHHHHHHhcchhcccCCCEEEEecchhhhhccCCCCceEEEEehhhhhhcccCchhhhc------cCCceEecCCCCHH
Confidence            9999999999863    4699999999999999999999999999999999999999876      9999999999 889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCc
Q 044174          156 VVNAYASQFAKDMENFLNARAEEIVSGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPI  235 (332)
Q Consensus       156 v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~  235 (332)
                      |.+||++||++||..||++|++||||||+||++++|+++.+++++ +.+.+|+.|.++|++||.+|+|++|++|+||+||
T Consensus       176 v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~gr~~~~~~~~-~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~  254 (359)
T 1m6e_X          176 VLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRSEDRAST-ECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQ  254 (359)
T ss_dssp             TSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEECSSSSSSST-TTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEecCCCCCcccc-chHHHHHHHHHHHHHHHHccccchhhhhccCCCc
Confidence            999999999999999999999999999999999999999988776 5778899999999999999999999999999999


Q ss_pred             ccCCHHHHHHHHHhCCceEEeEEEEeC----CCCCC-----CCCccHHHHHHHHHHHHhhHHHhhhCHHHHHHHHHHHHH
Q 044174          236 YSASSEEMVKLVDKNGHFSIKTVELTN----PTSWL-----EGPIDIKAWTMHVRAAMEAMFSKHFRIEIIDEMFNRLIR  306 (332)
Q Consensus       236 y~ps~~E~~~~ie~~G~F~I~~le~~~----p~~~~-----~~~~~~~~~a~~iRa~~epll~~hfg~~i~delf~r~~~  306 (332)
                      |+||++||+++|+++|+|+|+++|+++    |+...     +....|+.+++|+||++||+|.+|||++++|++|+||++
T Consensus       255 y~ps~~E~~~~ie~~G~F~i~~~e~~~~~~~~~~~~~d~~~~~~~~g~~~a~~~Ra~~e~ll~~hfG~~i~d~lf~ry~~  334 (359)
T 1m6e_X          255 YTPSPTEVEAEILKEGSFLIDHIEASEIYWSSCTKDGDGGGSVEEEGYNVARCMRAVAEPLLLDHFGEAIIEDVFHRYKL  334 (359)
T ss_dssp             BCCCSHHHHHHHHHTTTBCCEEEEEEEEETTCCSSCTTCCSSTTTTTTHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHcCCceEEEEEEEeeccCcccchhhhhhhhhHhHhHhhhhhhhhcchhhHHhccHHHHHHHHHHHHH
Confidence            999999999999999999999999886    22110     013578899999999999999999999999999999999


Q ss_pred             HHHhchhhhhcCCcceEEEEEEEEeC
Q 044174          307 RLFEFSDKVESGYKEKTQLFVILMRK  332 (332)
Q Consensus       307 ~v~~~l~~~~~~~~~~~~~~~~L~r~  332 (332)
                      ++++++..   ++.++++++++|+||
T Consensus       335 ~~~~~~~~---~~~~~~~~~~~L~k~  357 (359)
T 1m6e_X          335 LIIERMSK---EKTKFINVIVSLIRK  357 (359)
T ss_dssp             HHHHHHHS---SCCEEEEEEEEEEBC
T ss_pred             HHHHHHhh---CCCceEEEEEEEEeC
Confidence            99999887   788899999999997

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=100.00  E-value=2e-87  Score=654.66  Aligned_cols=325  Identities=30%  Similarity=0.534  Sum_probs=293.7

Q ss_pred             ChhhhhhHHHHHHHHHHhhhhcccCCCCCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCC
Q 044174            1 RLAADAVKEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTS   80 (332)
Q Consensus         1 ~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~   80 (332)
                      ++++..+||++++||++++....  ..+++++|||||||+|+||+.+++.||++|+++|.+.+.  .+|+|||||||||+
T Consensus        26 ~~~~~~~~~~~~~ai~~l~~~~~--~~~~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~--~~pe~~v~~nDLp~  101 (374)
T 3b5i_A           26 AMHARSMLHLLEETLENVHLNSS--ASPPPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGI--DPPEFTAFFSDLPS  101 (374)
T ss_dssp             CTTHHHHHHHHHHHHHTSCCCCS--SSCCCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTC--CCCCEEEEEEECTT
T ss_pred             HHHHHHHHHHHHHHHHHhhcccc--CCCCceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCC--CCCceeEEecCCCc
Confidence            56889999999999987754221  136789999999999999999999999999999987653  57899999999999


Q ss_pred             CchHHHHhcCccc---------------ccceeeecCCccccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCC
Q 044174           81 NDFNTLFTSLPQQ---------------REYYSAGVPGSFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKG  145 (332)
Q Consensus        81 NDFn~lf~~l~~~---------------~~~f~~~vpgSFy~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg  145 (332)
                      ||||+||++|+++               .+||++|||||||+||||++|+|+|||++||||||++|+.+.+..+|+||||
T Consensus       102 NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg  181 (374)
T 3b5i_A          102 NDFNTLFQLLPPLVSNTCMEECLAADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRG  181 (374)
T ss_dssp             SCHHHHHHHSCCBCCCC--CCC---CCCBCSEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTT
T ss_pred             cchHHHHhhhhhhhhhcchhhhccccCCCceEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCC
Confidence            9999999999974               2599999999999999999999999999999999999999999999999999


Q ss_pred             ceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEecccCCCCCCCCcchhHHH-HHHHHHHHHHHHhhccc
Q 044174          146 RIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIMPGIPYGMPYSHLTNGVMY-DLMATIFMELANEQLIT  224 (332)
Q Consensus       146 ~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~~~gr~~~~~~~~~~~~~~~-~~l~~al~~mv~eGli~  224 (332)
                      +|||++++|+|.+||++||++||..||++|++||||||+||++++|+++.+++++.+.+.+| ++|.++|++|+.||+++
T Consensus       182 ~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~  261 (374)
T 3b5i_A          182 RVFIHGAGEKTTTAYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVA  261 (374)
T ss_dssp             TSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSC
T ss_pred             ceEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcc
Confidence            99999996669999999999999999999999999999999999999998887765678889 99999999999999999


Q ss_pred             hhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEeC-CCCCCC---C--CccHHHHHHHHHHHHhhHHHhhhCHHHHH
Q 044174          225 EAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELTN-PTSWLE---G--PIDIKAWTMHVRAAMEAMFSKHFRIEIID  298 (332)
Q Consensus       225 ~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~-p~~~~~---~--~~~~~~~a~~iRa~~epll~~hfg~~i~d  298 (332)
                      ++++|+||+|+|+||++||+++|+++|+|+|+++|+++ |.+...   +  ...|+.+++++||++||+|.+|||++++|
T Consensus       262 ~e~~d~f~~P~y~ps~~E~~~~l~~~~~F~I~~le~~~~~~~~~~~~~~~~~~~g~~~a~~~Ra~~e~ll~~hfg~~i~d  341 (374)
T 3b5i_A          262 AEKRDGFNIPVYAPSLQDFKEVVDANGSFAIDKLVVYKGGSPLVVNEPDDASEVGRAFASSCRSVAGVLVEAHIGEELSN  341 (374)
T ss_dssp             HHHHSSCCCCBCCCCHHHHHHHHHHHCSEEEEEEEEEECCCCCCCSSTTCHHHHHHHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             hhhcccCCccccCCCHHHHHHHHHhcCCcEEEEEEEEeecCCccccccchhHHHHHHHHHHHHHhccchhHhhccHHHHH
Confidence            99999999999999999999999987889999999987 432111   1  24788999999999999999999999999


Q ss_pred             HHHHHHHHHHHhchhhhhcCCcc--eEEEEEEEE
Q 044174          299 EMFNRLIRRLFEFSDKVESGYKE--KTQLFVILM  330 (332)
Q Consensus       299 elf~r~~~~v~~~l~~~~~~~~~--~~~~~~~L~  330 (332)
                      ++|+||++++++++..+. ++.+  +++++++|+
T Consensus       342 ~lf~ry~~~~~~~~~~~~-~~~~~~~~~~~~~l~  374 (374)
T 3b5i_A          342 KLFSRVESRATSHAKDVL-VNLQFFHIVASLSFT  374 (374)
T ss_dssp             HHHHHHHHHHHHTCHHHH-TTCCCEEEEEEEEEC
T ss_pred             HHHHHHHHHHHHhHHHhh-hccccceEEEEEEeC
Confidence            999999999999998543 5666  789999885

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.46  E-value=3.7e-12  Score=117.41  Aligned_cols=201  Identities=16%  Similarity=0.144  Sum_probs=128.6

Q ss_pred             CceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCccccC
Q 044174           29 NIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHR  108 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~~  108 (332)
                      ...+|+|+|||+|..+..+..        .           ..+|+-.|+-. +.-...+....  +  +..+.+++..-
T Consensus        57 ~~~~vLDiGcG~G~~~~~l~~--------~-----------~~~v~gvD~s~-~~~~~a~~~~~--~--~~~~~~d~~~~  112 (279)
T 3ccf_A           57 PGEFILDLGCGTGQLTEKIAQ--------S-----------GAEVLGTDNAA-TMIEKARQNYP--H--LHFDVADARNF  112 (279)
T ss_dssp             TTCEEEEETCTTSHHHHHHHH--------T-----------TCEEEEEESCH-HHHHHHHHHCT--T--SCEEECCTTTC
T ss_pred             CCCEEEEecCCCCHHHHHHHh--------C-----------CCeEEEEECCH-HHHHHHHhhCC--C--CEEEECChhhC
Confidence            457999999999999877653        0           12444444321 11111111111  1  11122333332


Q ss_pred             CcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEE
Q 044174          109 LFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVII  188 (332)
Q Consensus       109 lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~  188 (332)
                      .+ ++++|+++|+.++||+...                                      ..+|+.-++-|+|||++++.
T Consensus       113 ~~-~~~fD~v~~~~~l~~~~d~--------------------------------------~~~l~~~~~~LkpgG~l~~~  153 (279)
T 3ccf_A          113 RV-DKPLDAVFSNAMLHWVKEP--------------------------------------EAAIASIHQALKSGGRFVAE  153 (279)
T ss_dssp             CC-SSCEEEEEEESCGGGCSCH--------------------------------------HHHHHHHHHHEEEEEEEEEE
T ss_pred             Cc-CCCcCEEEEcchhhhCcCH--------------------------------------HHHHHHHHHhcCCCcEEEEE
Confidence            33 5799999999999997531                                      23566666789999999999


Q ss_pred             ecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEeC-CCCCC
Q 044174          189 MPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELTN-PTSWL  267 (332)
Q Consensus       189 ~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~-p~~~~  267 (332)
                      ..+.++        ...+.+.+...+..   .|.-    ......|+++++.++++.++++.| |++..++.+. |....
T Consensus       154 ~~~~~~--------~~~~~~~~~~~~~~---~~~~----~~~~~~~~~~~~~~~~~~~l~~aG-f~~~~~~~~~~~~~~~  217 (279)
T 3ccf_A          154 FGGKGN--------IKYILEALYNALET---LGIH----NPQALNPWYFPSIGEYVNILEKQG-FDVTYAALFNRPTTLA  217 (279)
T ss_dssp             EECTTT--------THHHHHHHHHHHHH---HTCC----CGGGGCCCCCCCHHHHHHHHHHHT-EEEEEEEEEECCEECS
T ss_pred             ecCCcc--------hHHHHHHHHHHHHh---cCCc----cccCcCceeCCCHHHHHHHHHHcC-CEEEEEEEeccccccc
Confidence            877543        12223333333332   2321    223556889999999999999999 9999888775 43221


Q ss_pred             CCCccHHHHHHHHHHHHhhHHHhhhCHHHHHHHHHHHHHHHHhch
Q 044174          268 EGPIDIKAWTMHVRAAMEAMFSKHFRIEIIDEMFNRLIRRLFEFS  312 (332)
Q Consensus       268 ~~~~~~~~~a~~iRa~~epll~~hfg~~i~delf~r~~~~v~~~l  312 (332)
                         .+.+.+..|++++..+++. .++++..+++.+++.+.+.+..
T Consensus       218 ---~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  258 (279)
T 3ccf_A          218 ---EGEFGMANWIQMFASAFLV-GLTPDQQVQLIRKVEATLQDKL  258 (279)
T ss_dssp             ---SGGGHHHHHHHHHCHHHHT-TCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ---CCHHHHHHHHHHhhHHHhc-cCCHHHHHHHHHHHHHHHHhhc
Confidence               1225788899988777776 4888888888888888887653

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.35  E-value=2.3e-11  Score=109.86  Aligned_cols=203  Identities=11%  Similarity=0.098  Sum_probs=121.6

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCcccc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHH  107 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~  107 (332)
                      ....+|+|+|||+|..+..+.+..                 |..+|+..|+-.. .-...+....  +  +..+.+.+..
T Consensus        32 ~~~~~vLdiG~G~G~~~~~l~~~~-----------------~~~~v~~~D~s~~-~~~~a~~~~~--~--~~~~~~d~~~   89 (259)
T 2p35_A           32 ERVLNGYDLGCGPGNSTELLTDRY-----------------GVNVITGIDSDDD-MLEKAADRLP--N--TNFGKADLAT   89 (259)
T ss_dssp             SCCSSEEEETCTTTHHHHHHHHHH-----------------CTTSEEEEESCHH-HHHHHHHHST--T--SEEEECCTTT
T ss_pred             CCCCEEEEecCcCCHHHHHHHHhC-----------------CCCEEEEEECCHH-HHHHHHHhCC--C--cEEEECChhh
Confidence            345799999999999998775431                 1123444443221 1111111111  1  1223345544


Q ss_pred             CCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEE
Q 044174          108 RLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVI  187 (332)
Q Consensus       108 ~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl  187 (332)
                      -. |++++|+++|+.++||+..                                      ...+|+.-.+-|+|||++++
T Consensus        90 ~~-~~~~fD~v~~~~~l~~~~~--------------------------------------~~~~l~~~~~~L~pgG~l~~  130 (259)
T 2p35_A           90 WK-PAQKADLLYANAVFQWVPD--------------------------------------HLAVLSQLMDQLESGGVLAV  130 (259)
T ss_dssp             CC-CSSCEEEEEEESCGGGSTT--------------------------------------HHHHHHHHGGGEEEEEEEEE
T ss_pred             cC-ccCCcCEEEEeCchhhCCC--------------------------------------HHHHHHHHHHhcCCCeEEEE
Confidence            44 7889999999999999732                                      22456666788999999999


Q ss_pred             EecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhccc-CcCcccCCHHHHHHHHHhCCceEEeEEEEeC--CC
Q 044174          188 IMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSF-NLPIYSASSEEMVKLVDKNGHFSIKTVELTN--PT  264 (332)
Q Consensus       188 ~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f-n~P~y~ps~~E~~~~ie~~G~F~I~~le~~~--p~  264 (332)
                      ...+..+.             .....+.++...+.... ..... ..+..+++.+++++++++.| |+|+..+...  +.
T Consensus       131 ~~~~~~~~-------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~aG-f~v~~~~~~~~~~~  195 (259)
T 2p35_A          131 QMPDNLQE-------------PTHIAMHETADGGPWKD-AFSGGGLRRKPLPPPSDYFNALSPKS-SRVDVWHTVYNHPM  195 (259)
T ss_dssp             EEECCTTS-------------HHHHHHHHHHHHSTTGG-GC-------CCCCCHHHHHHHHGGGE-EEEEEEEEEEEEEE
T ss_pred             EeCCCCCc-------------HHHHHHHHHhcCcchHH-HhccccccccCCCCHHHHHHHHHhcC-CceEEEEEEeeecc
Confidence            98753211             11222333332211111 11111 23567789999999999999 9877666432  22


Q ss_pred             CCCCCCccHHHHHHHHHHHH-hhHHHhhhCHHHHHHHHHHHHHHHHhchh
Q 044174          265 SWLEGPIDIKAWTMHVRAAM-EAMFSKHFRIEIIDEMFNRLIRRLFEFSD  313 (332)
Q Consensus       265 ~~~~~~~~~~~~a~~iRa~~-epll~~hfg~~i~delf~r~~~~v~~~l~  313 (332)
                      .      +.+.+..|+++.. .+++. .++++..+++.+++.+.+++...
T Consensus       196 ~------~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  238 (259)
T 2p35_A          196 K------DADSIVEWVKGTGLRPYLA-AAGEENREAFLADYTRRIAAAYP  238 (259)
T ss_dssp             S------CHHHHHHHHTTTTTTHHHH-TTCGGGHHHHHHHHHHHHHHHSC
T ss_pred             C------CchHHhhhhhcCcchHHHH-hCCHHHHHHHHHHHHHHHHHhCC
Confidence            1      2366788888653 35554 58888889999999888886543

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.29  E-value=4.2e-11  Score=108.22  Aligned_cols=204  Identities=10%  Similarity=0.086  Sum_probs=123.5

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCcccc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHH  107 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~  107 (332)
                      ....+|+|+|||+|..+..+.+.                   ..+|+-.|.-. +.....+........-+..+.+++..
T Consensus        38 ~~~~~vLDiG~G~G~~~~~l~~~-------------------~~~v~~vD~s~-~~~~~a~~~~~~~~~~~~~~~~d~~~   97 (263)
T 2yqz_A           38 GEEPVFLELGVGTGRIALPLIAR-------------------GYRYIALDADA-AMLEVFRQKIAGVDRKVQVVQADARA   97 (263)
T ss_dssp             SSCCEEEEETCTTSTTHHHHHTT-------------------TCEEEEEESCH-HHHHHHHHHTTTSCTTEEEEESCTTS
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHC-------------------CCEEEEEECCH-HHHHHHHHHhhccCCceEEEEccccc
Confidence            44679999999999999877531                   01233333321 11111111110000112234445555


Q ss_pred             CCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEE
Q 044174          108 RLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVI  187 (332)
Q Consensus       108 ~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl  187 (332)
                      -.+|++++|+++++.++||+..                                      ...+|+.-.+-|+|||++++
T Consensus        98 ~~~~~~~fD~v~~~~~l~~~~~--------------------------------------~~~~l~~~~~~L~pgG~l~~  139 (263)
T 2yqz_A           98 IPLPDESVHGVIVVHLWHLVPD--------------------------------------WPKVLAEAIRVLKPGGALLE  139 (263)
T ss_dssp             CCSCTTCEEEEEEESCGGGCTT--------------------------------------HHHHHHHHHHHEEEEEEEEE
T ss_pred             CCCCCCCeeEEEECCchhhcCC--------------------------------------HHHHHHHHHHHCCCCcEEEE
Confidence            5578899999999999999753                                      12355566678999999999


Q ss_pred             EecccCCCCCCCCcchhHHHHHHHHHHHHHHHh-hccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEeC-CCC
Q 044174          188 IMPGIPYGMPYSHLTNGVMYDLMATIFMELANE-QLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELTN-PTS  265 (332)
Q Consensus       188 ~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~e-Gli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~-p~~  265 (332)
                      .+...+ .        ...+ .+...|..+... |. +      ...+.++++.+++++++++.| |++...+... +..
T Consensus       140 ~~~~~~-~--------~~~~-~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~l~~~G-f~~~~~~~~~~~~~  201 (263)
T 2yqz_A          140 GWDQAE-A--------SPEW-TLQERWRAFAAEEGF-P------VERGLHAKRLKEVEEALRRLG-LKPRTREVARWREE  201 (263)
T ss_dssp             EEEEEC-C--------CHHH-HHHHHHHHHHHHHTC-C------CCCCHHHHHHHHHHHHHHHTT-CCCEEEEEEEEEEE
T ss_pred             EecCCC-c--------cHHH-HHHHHHHHHHHHhCC-C------cccccccCCHHHHHHHHHHcC-CCcceEEEeeeecC
Confidence            944321 1        0101 122333332221 21 1      122456788999999999999 9987776553 221


Q ss_pred             CCCCCccHHHHHHHHHHHHhhHHHhhhCHHHHHHHHHHHHHHHHhchh
Q 044174          266 WLEGPIDIKAWTMHVRAAMEAMFSKHFRIEIIDEMFNRLIRRLFEFSD  313 (332)
Q Consensus       266 ~~~~~~~~~~~a~~iRa~~epll~~hfg~~i~delf~r~~~~v~~~l~  313 (332)
                           ...+.+..++++.+.+.+. +++++..+++.+++.+.+.+...
T Consensus       202 -----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~  243 (263)
T 2yqz_A          202 -----RTPREALEALSERLYSFTQ-GLPEPVHARVMERLWAWAEAELG  243 (263)
T ss_dssp             -----ECHHHHHHHHHTTCSGGGS-SSCHHHHHHHHHHHHHHHHHHSS
T ss_pred             -----CCHHHHHHHHHHhhccccc-CCCHHHHHHHHHHHHHHHHHhcC
Confidence                 1235677777766666554 68888899999999988887654

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.24  E-value=1.6e-09  Score=98.67  Aligned_cols=196  Identities=11%  Similarity=0.037  Sum_probs=112.1

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcC-ccc-ccceeeecCCcc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSL-PQQ-REYYSAGVPGSF  105 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l-~~~-~~~f~~~vpgSF  105 (332)
                      ....+|+|+|||+|..+..+++..                  ..+|+--|+-. ......+.. ... ..--+..+.+++
T Consensus        60 ~~~~~vLDiGcG~G~~~~~l~~~~------------------~~~v~gvD~s~-~~~~~a~~~~~~~~~~~~~~~~~~d~  120 (273)
T 3bus_A           60 RSGDRVLDVGCGIGKPAVRLATAR------------------DVRVTGISISR-PQVNQANARATAAGLANRVTFSYADA  120 (273)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHS------------------CCEEEEEESCH-HHHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHhc------------------CCEEEEEeCCH-HHHHHHHHHHHhcCCCcceEEEECcc
Confidence            345799999999999998876421                  01223333211 111111110 000 001123345566


Q ss_pred             ccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeE
Q 044174          106 HHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMM  185 (332)
Q Consensus       106 y~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~m  185 (332)
                      ....+|++++|+|+|+.++||+...                                      ..+|+.-++-|+|||++
T Consensus       121 ~~~~~~~~~fD~v~~~~~l~~~~~~--------------------------------------~~~l~~~~~~L~pgG~l  162 (273)
T 3bus_A          121 MDLPFEDASFDAVWALESLHHMPDR--------------------------------------GRALREMARVLRPGGTV  162 (273)
T ss_dssp             TSCCSCTTCEEEEEEESCTTTSSCH--------------------------------------HHHHHHHHTTEEEEEEE
T ss_pred             ccCCCCCCCccEEEEechhhhCCCH--------------------------------------HHHHHHHHHHcCCCeEE
Confidence            6656788999999999999997431                                      24666777889999999


Q ss_pred             EEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEeCCCC
Q 044174          186 VIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELTNPTS  265 (332)
Q Consensus       186 vl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~p~~  265 (332)
                      ++......+...      .    .....+..+..          .+. ..++++.+++++++++.| |++..++.+.+..
T Consensus       163 ~i~~~~~~~~~~------~----~~~~~~~~~~~----------~~~-~~~~~~~~~~~~~l~~aG-f~~~~~~~~~~~~  220 (273)
T 3bus_A          163 AIADFVLLAPVE------G----AKKEAVDAFRA----------GGG-VLSLGGIDEYESDVRQAE-LVVTSTVDISAQA  220 (273)
T ss_dssp             EEEEEEESSCCC------H----HHHHHHHHHHH----------HHT-CCCCCCHHHHHHHHHHTT-CEEEEEEECHHHH
T ss_pred             EEEEeeccCCCC------h----hHHHHHHHHHh----------hcC-ccCCCCHHHHHHHHHHcC-CeEEEEEECcHhH
Confidence            998776543211      1    11112222110          011 235789999999999999 9998888764211


Q ss_pred             CCCCCccHHHHHHHHHHHHhhHHHhhhCHHHHHHHHHHHHHH
Q 044174          266 WLEGPIDIKAWTMHVRAAMEAMFSKHFRIEIIDEMFNRLIRR  307 (332)
Q Consensus       266 ~~~~~~~~~~~a~~iRa~~epll~~hfg~~i~delf~r~~~~  307 (332)
                      ..    .-..+...+++....+ ...+|++..+.+.+.+...
T Consensus       221 ~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  257 (273)
T 3bus_A          221 RP----SLVKTAEAFENARSQV-EPFMGAEGLDRMIATFRGL  257 (273)
T ss_dssp             TT----HHHHHHHHHHHTHHHH-HHHHCHHHHHHHHHHHHHH
T ss_pred             HH----HHHHHHHHHHHhHHHH-HhhcCHHHHHHHHHHHHHH
Confidence            10    1123333333333333 3467887777776666653

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.16  E-value=1.1e-09  Score=97.49  Aligned_cols=168  Identities=13%  Similarity=0.133  Sum_probs=106.6

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCcccc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHH  107 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~  107 (332)
                      .+..+|+|+|||+|..+..+.+..                 |..+|+.-|+-..-....-+.++...  -+..+.+++..
T Consensus        43 ~~~~~vLDiG~G~G~~~~~l~~~~-----------------~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~  103 (234)
T 3dtn_A           43 TENPDILDLGAGTGLLSAFLMEKY-----------------PEATFTLVDMSEKMLEIAKNRFRGNL--KVKYIEADYSK  103 (234)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHC-----------------TTCEEEEEESCHHHHHHHHHHTCSCT--TEEEEESCTTT
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhC-----------------CCCeEEEEECCHHHHHHHHHhhccCC--CEEEEeCchhc
Confidence            456899999999999987765421                 23455555553221111111222211  23445567766


Q ss_pred             CCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEE
Q 044174          108 RLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVI  187 (332)
Q Consensus       108 ~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl  187 (332)
                      ..++ +++|+++++.++||++.                                    .+...+|+.-++-|+|||++++
T Consensus       104 ~~~~-~~fD~v~~~~~l~~~~~------------------------------------~~~~~~l~~~~~~LkpgG~l~~  146 (234)
T 3dtn_A          104 YDFE-EKYDMVVSALSIHHLED------------------------------------EDKKELYKRSYSILKESGIFIN  146 (234)
T ss_dssp             CCCC-SCEEEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cCCC-CCceEEEEeCccccCCH------------------------------------HHHHHHHHHHHHhcCCCcEEEE
Confidence            6666 89999999999999732                                    1223456666688999999999


Q ss_pred             EecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhccc---CcCcccCCHHHHHHHHHhCCceEEeEEEE
Q 044174          188 IMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSF---NLPIYSASSEEMVKLVDKNGHFSIKTVEL  260 (332)
Q Consensus       188 ~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f---n~P~y~ps~~E~~~~ie~~G~F~I~~le~  260 (332)
                      .....++.        ..........|.....++-.+.+++..+   .--.+.++.+|+++++++.| |++.++..
T Consensus       147 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aG-F~~v~~~~  213 (234)
T 3dtn_A          147 ADLVHGET--------AFIENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQLNWLKEAG-FRDVSCIY  213 (234)
T ss_dssp             EEECBCSS--------HHHHHHHHHHHHHHHHTSSCCHHHHHTTC----CCCCCBHHHHHHHHHHTT-CEEEEEEE
T ss_pred             EEecCCCC--------hhhhhHHHHHHHHHHHhcCCCHHHHHHHHHhcccccccCHHHHHHHHHHcC-CCceeeee
Confidence            87765432        2233455566766666555555544421   12235578999999999999 99877664

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.14  E-value=6e-09  Score=93.97  Aligned_cols=194  Identities=11%  Similarity=0.054  Sum_probs=112.4

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCcccc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHH  107 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~  107 (332)
                      ....+|+|+|||+|..+..+.... .                 .+|+--|+-. +.....+...... .-+..+.+++..
T Consensus        54 ~~~~~vLdiG~G~G~~~~~l~~~~-~-----------------~~v~~vD~s~-~~~~~a~~~~~~~-~~~~~~~~d~~~  113 (266)
T 3ujc_A           54 NENSKVLDIGSGLGGGCMYINEKY-G-----------------AHTHGIDICS-NIVNMANERVSGN-NKIIFEANDILT  113 (266)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHH-C-----------------CEEEEEESCH-HHHHHHHHTCCSC-TTEEEEECCTTT
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHc-C-----------------CEEEEEeCCH-HHHHHHHHHhhcC-CCeEEEECcccc
Confidence            446799999999999998876532 0                 1233333211 1111112111110 122334455555


Q ss_pred             CCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEE
Q 044174          108 RLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVI  187 (332)
Q Consensus       108 ~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl  187 (332)
                      ..+|++++|+|+|+.++||++.                                    .|...+|+.-.+-|+|||++++
T Consensus       114 ~~~~~~~fD~v~~~~~l~~~~~------------------------------------~~~~~~l~~~~~~L~pgG~l~~  157 (266)
T 3ujc_A          114 KEFPENNFDLIYSRDAILALSL------------------------------------ENKNKLFQKCYKWLKPTGTLLI  157 (266)
T ss_dssp             CCCCTTCEEEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CCCCCCcEEEEeHHHHHHhcCh------------------------------------HHHHHHHHHHHHHcCCCCEEEE
Confidence            5678999999999999999631                                    2455677777788999999999


Q ss_pred             EecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEeCCCCCC
Q 044174          188 IMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELTNPTSWL  267 (332)
Q Consensus       188 ~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~p~~~~  267 (332)
                      .....+.....     .   ..+...+.   ..             ...+++.+++++++++.| |++...+.+.+.   
T Consensus       158 ~~~~~~~~~~~-----~---~~~~~~~~---~~-------------~~~~~~~~~~~~~l~~~G-f~~~~~~~~~~~---  209 (266)
T 3ujc_A          158 TDYCATEKENW-----D---DEFKEYVK---QR-------------KYTLITVEEYADILTACN-FKNVVSKDLSDY---  209 (266)
T ss_dssp             EEEEESCGGGC-----C---HHHHHHHH---HH-------------TCCCCCHHHHHHHHHHTT-CEEEEEEECHHH---
T ss_pred             EEeccCCcccc-----h---HHHHHHHh---cC-------------CCCCCCHHHHHHHHHHcC-CeEEEEEeCCHH---
Confidence            98765441111     1   11111111   11             234678999999999999 998887755311   


Q ss_pred             CCCccHHHHHHHHHHHHh--hHHHhhhCHHHHHHHHHHHHHHHH
Q 044174          268 EGPIDIKAWTMHVRAAME--AMFSKHFRIEIIDEMFNRLIRRLF  309 (332)
Q Consensus       268 ~~~~~~~~~a~~iRa~~e--pll~~hfg~~i~delf~r~~~~v~  309 (332)
                          +...+..|.+.+..  .-+.+.++++..+.+.+.....+.
T Consensus       210 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (266)
T 3ujc_A          210 ----WNQLLEVEHKYLHENKEEFLKLFSEKKFISLDDGWSRKIK  249 (266)
T ss_dssp             ----HHHHHHHHHHHHHHTHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHhCHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence                12334445444322  112234666666655555555544

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.14  E-value=6.8e-09  Score=93.58  Aligned_cols=211  Identities=14%  Similarity=0.184  Sum_probs=115.1

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcC-cccc-cceeeecCCcc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSL-PQQR-EYYSAGVPGSF  105 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l-~~~~-~~f~~~vpgSF  105 (332)
                      +...+|+|+|||+|..++.+.+..                 +. +|+-.|+-.. .-...+.. .... .--+..+.+++
T Consensus        45 ~~~~~vLDiG~G~G~~~~~l~~~~-----------------~~-~v~~vD~s~~-~~~~a~~~~~~~~~~~~~~~~~~d~  105 (257)
T 3f4k_A           45 TDDAKIADIGCGTGGQTLFLADYV-----------------KG-QITGIDLFPD-FIEIFNENAVKANCADRVKGITGSM  105 (257)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHC-----------------CS-EEEEEESCHH-HHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHhC-----------------CC-eEEEEECCHH-HHHHHHHHHHHcCCCCceEEEECCh
Confidence            445699999999999998875431                 11 3333333211 11111111 0000 01123344555


Q ss_pred             ccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeE
Q 044174          106 HHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMM  185 (332)
Q Consensus       106 y~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~m  185 (332)
                      ..-.+|++++|+++|+.++||+ . +                                     ..+|+.-.+-|+|||++
T Consensus       106 ~~~~~~~~~fD~v~~~~~l~~~-~-~-------------------------------------~~~l~~~~~~L~pgG~l  146 (257)
T 3f4k_A          106 DNLPFQNEELDLIWSEGAIYNI-G-F-------------------------------------ERGMNEWSKYLKKGGFI  146 (257)
T ss_dssp             TSCSSCTTCEEEEEEESCSCCC-C-H-------------------------------------HHHHHHHHTTEEEEEEE
T ss_pred             hhCCCCCCCEEEEEecChHhhc-C-H-------------------------------------HHHHHHHHHHcCCCcEE
Confidence            5555788999999999999996 1 1                                     12455556789999999


Q ss_pred             EEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEeCCCC
Q 044174          186 VIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELTNPTS  265 (332)
Q Consensus       186 vl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~p~~  265 (332)
                      ++...........         ..+...|...               .| ..++.+++.+++++.| |++...+.+....
T Consensus       147 ~~~~~~~~~~~~~---------~~~~~~~~~~---------------~~-~~~~~~~~~~~l~~aG-f~~v~~~~~~~~~  200 (257)
T 3f4k_A          147 AVSEASWFTSERP---------AEIEDFWMDA---------------YP-EISVIPTCIDKMERAG-YTPTAHFILPENC  200 (257)
T ss_dssp             EEEEEEESSSCCC---------HHHHHHHHHH---------------CT-TCCBHHHHHHHHHHTT-EEEEEEEECCGGG
T ss_pred             EEEEeeccCCCCh---------HHHHHHHHHh---------------CC-CCCCHHHHHHHHHHCC-CeEEEEEECChhh
Confidence            9997653332211         1223333321               12 2578999999999999 9998876654223


Q ss_pred             CCCCCccHHHHHHHHHHHHhhHHHhhhCHHHHHHHHHHHHHHHHhchhhhhcCCcceEEEEEEEEeC
Q 044174          266 WLEGPIDIKAWTMHVRAAMEAMFSKHFRIEIIDEMFNRLIRRLFEFSDKVESGYKEKTQLFVILMRK  332 (332)
Q Consensus       266 ~~~~~~~~~~~a~~iRa~~epll~~hfg~~i~delf~r~~~~v~~~l~~~~~~~~~~~~~~~~L~r~  332 (332)
                      |.+.  +...+.    ...+.+...+-+....+++.++..+..... ..   ....+-..+++++|+
T Consensus       201 w~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~g~~~~v~~k~  257 (257)
T 3f4k_A          201 WTEH--YFAPQD----EVRETFMKEHAGNKTAMDFMKGQQYERSLY-SK---YKDYYGYVFYIGQKR  257 (257)
T ss_dssp             TCCC--CCHHHH----HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HH---HTTTEEEEEEEEEEC
T ss_pred             HHHH--HHHHHH----HHHHHHHHhcCCCHHHHHHHHHHHHHHHHH-HH---hCCccceEEEEEecC
Confidence            3211  111222    222233333444455555555555554433 22   123345566777764

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.09  E-value=1.2e-08  Score=94.93  Aligned_cols=212  Identities=11%  Similarity=0.076  Sum_probs=112.4

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcC-cccc-cceeeecCCcc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSL-PQQR-EYYSAGVPGSF  105 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l-~~~~-~~f~~~vpgSF  105 (332)
                      ....+|+|+|||+|..++.+++..                 + .+|+--|+-.+ .-...+.. .... +--+..+-+++
T Consensus        71 ~~~~~vLDiGcG~G~~~~~la~~~-----------------~-~~v~gvD~s~~-~~~~a~~~~~~~~~~~~v~~~~~d~  131 (302)
T 3hem_A           71 EPGMTLLDIGCGWGSTMRHAVAEY-----------------D-VNVIGLTLSEN-QYAHDKAMFDEVDSPRRKEVRIQGW  131 (302)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHH-----------------C-CEEEEEECCHH-HHHHHHHHHHHSCCSSCEEEEECCG
T ss_pred             CCcCEEEEeeccCcHHHHHHHHhC-----------------C-CEEEEEECCHH-HHHHHHHHHHhcCCCCceEEEECCH
Confidence            445799999999999998876531                 0 12222332111 01111110 0000 00111222333


Q ss_pred             ccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeE
Q 044174          106 HHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMM  185 (332)
Q Consensus       106 y~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~m  185 (332)
                      .. +  ++++|+++|+.++|++..... .         .|                   .+++..+|+.-.+-|+|||++
T Consensus       132 ~~-~--~~~fD~v~~~~~~~~~~d~~~-~---------~~-------------------~~~~~~~l~~~~~~LkpgG~l  179 (302)
T 3hem_A          132 EE-F--DEPVDRIVSLGAFEHFADGAG-D---------AG-------------------FERYDTFFKKFYNLTPDDGRM  179 (302)
T ss_dssp             GG-C--CCCCSEEEEESCGGGTTCCSS-C---------CC-------------------TTHHHHHHHHHHHSSCTTCEE
T ss_pred             HH-c--CCCccEEEEcchHHhcCcccc-c---------cc-------------------hhHHHHHHHHHHHhcCCCcEE
Confidence            22 2  679999999999999765321 0         00                   135667888888999999999


Q ss_pred             EEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCc-ccCCHHHHHHHHHhCCceEEeEEEEeCCC
Q 044174          186 VIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPI-YSASSEEMVKLVDKNGHFSIKTVELTNPT  264 (332)
Q Consensus       186 vl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~-y~ps~~E~~~~ie~~G~F~I~~le~~~p~  264 (332)
                      ++......+......  .+..+..-...+.+...          .+.+|. +.|+.+++.+.+++.| |++..++.+.+ 
T Consensus       180 ~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~----------~~~~p~~~~~s~~~~~~~l~~aG-f~~~~~~~~~~-  245 (302)
T 3hem_A          180 LLHTITIPDKEEAQE--LGLTSPMSLLRFIKFIL----------TEIFPGGRLPRISQVDYYSSNAG-WKVERYHRIGA-  245 (302)
T ss_dssp             EEEEEECCCHHHHHH--HTCCCCHHHHHHHHHHH----------HHTCTTCCCCCHHHHHHHHHHHT-CEEEEEEECGG-
T ss_pred             EEEEEeccCccchhh--ccccccccccchHHHHH----------HhcCCCCCCCCHHHHHHHHHhCC-cEEEEEEeCch-
Confidence            999877543110000  00000000001111111          122443 7899999999999999 99999886532 


Q ss_pred             CCCCCCccHHHHHHHHHHHHhh--HHHhhhCHHHHHHHHHHHHHHHHhc
Q 044174          265 SWLEGPIDIKAWTMHVRAAMEA--MFSKHFRIEIIDEMFNRLIRRLFEF  311 (332)
Q Consensus       265 ~~~~~~~~~~~~a~~iRa~~ep--ll~~hfg~~i~delf~r~~~~v~~~  311 (332)
                            .+++.+..|.+.+.+.  -+.+.++++..+ .++.|-...+..
T Consensus       246 ------~y~~tl~~w~~~~~~~~~~~~~~~~~~~~~-~w~~yl~~~~~~  287 (302)
T 3hem_A          246 ------NYVPTLNAWADALQAHKDEAIALKGQETCD-IYMHYLRGCSDL  287 (302)
T ss_dssp             ------GHHHHHHHHHHHHHHTHHHHHHHHCHHHHH-HHHHHHHHHHHH
T ss_pred             ------hHHHHHHHHHHHHHHhHHHHHHHhCHHHHH-HHHHHHHHHHHH
Confidence                  2345566665554432  222346655443 344444444433

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.06  E-value=4.7e-08  Score=89.02  Aligned_cols=170  Identities=17%  Similarity=0.163  Sum_probs=99.6

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcC-ccc-ccceeeecCCcc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSL-PQQ-REYYSAGVPGSF  105 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l-~~~-~~~f~~~vpgSF  105 (332)
                      +...+|+|+|||+|..++.+++.                  +..+|+-.|+-.. .-...+.. ... .+--+..+.+++
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~------------------~~~~v~gvD~s~~-~~~~a~~~~~~~~~~~~v~~~~~d~  105 (267)
T 3kkz_A           45 TEKSLIADIGCGTGGQTMVLAGH------------------VTGQVTGLDFLSG-FIDIFNRNARQSGLQNRVTGIVGSM  105 (267)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHTT------------------CSSEEEEEESCHH-HHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred             CCCCEEEEeCCCCCHHHHHHHhc------------------cCCEEEEEeCCHH-HHHHHHHHHHHcCCCcCcEEEEcCh
Confidence            45689999999999998876531                  1234444443221 11111111 000 001122344555


Q ss_pred             ccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeE
Q 044174          106 HHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMM  185 (332)
Q Consensus       106 y~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~m  185 (332)
                      ..-.+|++++|+|+|+.++|++ . |                                     ..+|+.-.+-|+|||++
T Consensus       106 ~~~~~~~~~fD~i~~~~~~~~~-~-~-------------------------------------~~~l~~~~~~LkpgG~l  146 (267)
T 3kkz_A          106 DDLPFRNEELDLIWSEGAIYNI-G-F-------------------------------------ERGLNEWRKYLKKGGYL  146 (267)
T ss_dssp             TSCCCCTTCEEEEEESSCGGGT-C-H-------------------------------------HHHHHHHGGGEEEEEEE
T ss_pred             hhCCCCCCCEEEEEEcCCceec-C-H-------------------------------------HHHHHHHHHHcCCCCEE
Confidence            5555788999999999999996 2 2                                     12556666789999999


Q ss_pred             EEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEeCCCC
Q 044174          186 VIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELTNPTS  265 (332)
Q Consensus       186 vl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~p~~  265 (332)
                      ++...........         ..+...|.+    .           .| .+++.+++.+.+++.| |++..++.+....
T Consensus       147 ~~~~~~~~~~~~~---------~~~~~~~~~----~-----------~~-~~~~~~~~~~~l~~aG-f~~v~~~~~~~~~  200 (267)
T 3kkz_A          147 AVSECSWFTDERP---------AEINDFWMD----A-----------YP-EIDTIPNQVAKIHKAG-YLPVATFILPENC  200 (267)
T ss_dssp             EEEEEEESSSCCC---------HHHHHHHHH----H-----------CT-TCEEHHHHHHHHHHTT-EEEEEEEECCGGG
T ss_pred             EEEEeeecCCCCh---------HHHHHHHHH----h-----------CC-CCCCHHHHHHHHHHCC-CEEEEEEECCHhH
Confidence            9987654322211         122333321    1           13 4679999999999999 9998887765333


Q ss_pred             CCCCCccHHHHHHHHHHH
Q 044174          266 WLEGPIDIKAWTMHVRAA  283 (332)
Q Consensus       266 ~~~~~~~~~~~a~~iRa~  283 (332)
                      +.  +.+...+..|++.+
T Consensus       201 w~--~~~~~~~~~~~~~~  216 (267)
T 3kkz_A          201 WT--DHYFTPKVAAQKIF  216 (267)
T ss_dssp             TT--TTTHHHHHHHHHHH
T ss_pred             HH--HHHHHHHHHHHHHH
Confidence            32  12334444454444

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.03  E-value=2.8e-09  Score=93.87  Aligned_cols=157  Identities=15%  Similarity=0.144  Sum_probs=97.0

Q ss_pred             CceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCccccC
Q 044174           29 NIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHR  108 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~~  108 (332)
                      ...+|+|+|||+|..+..+.+.                   ..+|+.-|.-.. .....+....   .-+..+.+++..-
T Consensus        45 ~~~~vLDiGcG~G~~~~~l~~~-------------------~~~v~~vD~s~~-~~~~a~~~~~---~~~~~~~~d~~~~  101 (220)
T 3hnr_A           45 SFGNVLEFGVGTGNLTNKLLLA-------------------GRTVYGIEPSRE-MRMIAKEKLP---KEFSITEGDFLSF  101 (220)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHT-------------------TCEEEEECSCHH-HHHHHHHHSC---TTCCEESCCSSSC
T ss_pred             CCCeEEEeCCCCCHHHHHHHhC-------------------CCeEEEEeCCHH-HHHHHHHhCC---CceEEEeCChhhc
Confidence            3579999999999988776542                   123444444221 1111211111   1123345666666


Q ss_pred             CcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEE
Q 044174          109 LFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVII  188 (332)
Q Consensus       109 lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~  188 (332)
                      .++ +++|+++|+.++||+...                                    +...+|+.-.+-|+|||++++.
T Consensus       102 ~~~-~~fD~v~~~~~l~~~~~~------------------------------------~~~~~l~~~~~~LkpgG~l~i~  144 (220)
T 3hnr_A          102 EVP-TSIDTIVSTYAFHHLTDD------------------------------------EKNVAIAKYSQLLNKGGKIVFA  144 (220)
T ss_dssp             CCC-SCCSEEEEESCGGGSCHH------------------------------------HHHHHHHHHHHHSCTTCEEEEE
T ss_pred             CCC-CCeEEEEECcchhcCChH------------------------------------HHHHHHHHHHHhcCCCCEEEEE
Confidence            667 999999999999996431                                    1123666667889999999999


Q ss_pred             ecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEe
Q 044174          189 MPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELT  261 (332)
Q Consensus       189 ~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~  261 (332)
                      .....+.            ......+..+...|....   ..-..++++++.+++++++++.| |+|...+..
T Consensus       145 ~~~~~~~------------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~aG-f~v~~~~~~  201 (220)
T 3hnr_A          145 DTIFADQ------------DAYDKTVEAAKQRGFHQL---ANDLQTEYYTRIPVMQTIFENNG-FHVTFTRLN  201 (220)
T ss_dssp             EECBSSH------------HHHHHHHHHHHHTTCHHH---HHHHHHSCCCBHHHHHHHHHHTT-EEEEEEECS
T ss_pred             eccccCh------------HHHHHHHHHHHhCCCccc---hhhcchhhcCCHHHHHHHHHHCC-CEEEEeecc
Confidence            7554331            122333333444443211   11123567889999999999999 999887743

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.03  E-value=7.8e-09  Score=91.32  Aligned_cols=172  Identities=14%  Similarity=0.123  Sum_probs=99.6

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhc-Ccccc-----cceeeec
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTS-LPQQR-----EYYSAGV  101 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~-l~~~~-----~~f~~~v  101 (332)
                      ++..+|+|+|||+|..++.+.+.                   ..+|+..|.-..= -...+. +....     .-.+..+
T Consensus        29 ~~~~~vLdiG~G~G~~~~~l~~~-------------------~~~v~~vD~s~~~-~~~a~~~~~~~~~~~~~~~~~~~~   88 (235)
T 3sm3_A           29 QEDDEILDIGCGSGKISLELASK-------------------GYSVTGIDINSEA-IRLAETAARSPGLNQKTGGKAEFK   88 (235)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT-------------------TCEEEEEESCHHH-HHHHHHHTTCCSCCSSSSCEEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHhC-------------------CCeEEEEECCHHH-HHHHHHHHHhcCCccccCcceEEE
Confidence            45679999999999998877542                   0123333332111 111111 11100     1123334


Q ss_pred             CCccccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 044174          102 PGSFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVS  181 (332)
Q Consensus       102 pgSFy~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~p  181 (332)
                      -+.+..-.+|++++|+++++.++|++...                                   .++..+|+.-.+-|+|
T Consensus        89 ~~d~~~~~~~~~~~D~v~~~~~l~~~~~~-----------------------------------~~~~~~l~~~~~~L~p  133 (235)
T 3sm3_A           89 VENASSLSFHDSSFDFAVMQAFLTSVPDP-----------------------------------KERSRIIKEVFRVLKP  133 (235)
T ss_dssp             ECCTTSCCSCTTCEEEEEEESCGGGCCCH-----------------------------------HHHHHHHHHHHHHEEE
T ss_pred             EecccccCCCCCceeEEEEcchhhcCCCH-----------------------------------HHHHHHHHHHHHHcCC
Confidence            45555556789999999999999996541                                   1233567777788999


Q ss_pred             CCeEEEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcc--cCcCcccCCHHHHHHHHHhCCceEEeEEE
Q 044174          182 GGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDS--FNLPIYSASSEEMVKLVDKNGHFSIKTVE  259 (332)
Q Consensus       182 GG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~--fn~P~y~ps~~E~~~~ie~~G~F~I~~le  259 (332)
                      ||++++...+.....       ..........+......|.........  .....++++.+|+++++++.| |++..++
T Consensus       134 gG~l~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aG-f~~~~~~  205 (235)
T 3sm3_A          134 GAYLYLVEFGQNWHL-------KLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHFTEKELVFLLTDCR-FEIDYFR  205 (235)
T ss_dssp             EEEEEEEEEBCCTTS-------HHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEECBCHHHHHHHHHTTT-EEEEEEE
T ss_pred             CeEEEEEECCcchhH-------HHHHHHhhhhccchhhhcceEecccccCCcceeeEeCCHHHHHHHHHHcC-CEEEEEE
Confidence            999999987764321       111122222222221222211110010  122356789999999999999 9999988


Q ss_pred             EeC
Q 044174          260 LTN  262 (332)
Q Consensus       260 ~~~  262 (332)
                      ...
T Consensus       206 ~~~  208 (235)
T 3sm3_A          206 VKE  208 (235)
T ss_dssp             EEE
T ss_pred             ecc
Confidence            655

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.00  E-value=3e-09  Score=92.71  Aligned_cols=143  Identities=13%  Similarity=0.042  Sum_probs=95.4

Q ss_pred             ceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCccccCC
Q 044174           30 IIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHRL  109 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~~l  109 (332)
                      ..+|+|+|||+|..+..+.+.            +       .+|+--|.-. +.-...+....    -+.-+-+++..-.
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~------------~-------~~v~gvD~s~-~~~~~a~~~~~----~~~~~~~d~~~~~   97 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASL------------G-------HQIEGLEPAT-RLVELARQTHP----SVTFHHGTITDLS   97 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHT------------T-------CCEEEECCCH-HHHHHHHHHCT----TSEEECCCGGGGG
T ss_pred             CCeEEEecCCCCHHHHHHHhc------------C-------CeEEEEeCCH-HHHHHHHHhCC----CCeEEeCcccccc
Confidence            578999999999988776542            0       1233344311 11111111111    1223455666666


Q ss_pred             cCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEe
Q 044174          110 FPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIM  189 (332)
Q Consensus       110 fP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~~  189 (332)
                      +|++++|+++++.++|++..                                    .|...+|+.-++-|+|||++++..
T Consensus        98 ~~~~~fD~v~~~~~l~~~~~------------------------------------~~~~~~l~~~~~~L~pgG~l~i~~  141 (203)
T 3h2b_A           98 DSPKRWAGLLAWYSLIHMGP------------------------------------GELPDALVALRMAVEDGGGLLMSF  141 (203)
T ss_dssp             GSCCCEEEEEEESSSTTCCT------------------------------------TTHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cCCCCeEEEEehhhHhcCCH------------------------------------HHHHHHHHHHHHHcCCCcEEEEEE
Confidence            78999999999999999752                                    123456777778899999999998


Q ss_pred             cccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEeCC
Q 044174          190 PGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELTNP  263 (332)
Q Consensus       190 ~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~p  263 (332)
                      .......                              .++....+.++.+.+|+++++++.| |++..++.+.+
T Consensus       142 ~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~l~~~G-f~~~~~~~~~~  184 (203)
T 3h2b_A          142 FSGPSLE------------------------------PMYHPVATAYRWPLPELAQALETAG-FQVTSSHWDPR  184 (203)
T ss_dssp             ECCSSCE------------------------------EECCSSSCEEECCHHHHHHHHHHTT-EEEEEEEECTT
T ss_pred             ccCCchh------------------------------hhhchhhhhccCCHHHHHHHHHHCC-CcEEEEEecCC
Confidence            7654311                              1122234677889999999999999 99999998763

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.00  E-value=9.1e-09  Score=94.67  Aligned_cols=164  Identities=12%  Similarity=0.160  Sum_probs=95.0

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcC-cccc-cceeeecCCcc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSL-PQQR-EYYSAGVPGSF  105 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l-~~~~-~~f~~~vpgSF  105 (332)
                      ++..+|+|+|||+|..+..+...                   ..+|+-.|.-.. .-...+.. .... .--+..+-+++
T Consensus        67 ~~~~~vLDiGcG~G~~~~~l~~~-------------------~~~v~gvD~s~~-~~~~a~~~~~~~~~~~~v~~~~~d~  126 (285)
T 4htf_A           67 PQKLRVLDAGGGEGQTAIKMAER-------------------GHQVILCDLSAQ-MIDRAKQAAEAKGVSDNMQFIHCAA  126 (285)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHT-------------------TCEEEEEESCHH-HHHHHHHHHHC-CCGGGEEEEESCG
T ss_pred             CCCCEEEEeCCcchHHHHHHHHC-------------------CCEEEEEECCHH-HHHHHHHHHHhcCCCcceEEEEcCH
Confidence            34679999999999988877542                   012333333211 11111111 0000 01122344455


Q ss_pred             ccCC-cCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCe
Q 044174          106 HHRL-FPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGM  184 (332)
Q Consensus       106 y~~l-fP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~  184 (332)
                      .... ++++++|+|+++.++||+...                                      ..+|+.-++-|+|||+
T Consensus       127 ~~~~~~~~~~fD~v~~~~~l~~~~~~--------------------------------------~~~l~~~~~~LkpgG~  168 (285)
T 4htf_A          127 QDVASHLETPVDLILFHAVLEWVADP--------------------------------------RSVLQTLWSVLRPGGV  168 (285)
T ss_dssp             GGTGGGCSSCEEEEEEESCGGGCSCH--------------------------------------HHHHHHHHHTEEEEEE
T ss_pred             HHhhhhcCCCceEEEECchhhcccCH--------------------------------------HHHHHHHHHHcCCCeE
Confidence            5544 688999999999999997431                                      2356666788999999


Q ss_pred             EEEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEeC
Q 044174          185 MVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELTN  262 (332)
Q Consensus       185 mvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~  262 (332)
                      +++........         .....+...|.. ...+.....  .....+.++.+.+|+++++++.| |++...+.+.
T Consensus       169 l~~~~~~~~~~---------~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~aG-f~v~~~~~~~  233 (285)
T 4htf_A          169 LSLMFYNAHGL---------LMHNMVAGNFDY-VQAGMPKKK--KRTLSPDYPRDPTQVYLWLEEAG-WQIMGKTGVR  233 (285)
T ss_dssp             EEEEEEBHHHH---------HHHHHHTTCHHH-HHTTCCCC------CCCSCCBCHHHHHHHHHHTT-CEEEEEEEES
T ss_pred             EEEEEeCCchH---------HHHHHHhcCHHH-Hhhhccccc--cccCCCCCCCCHHHHHHHHHHCC-CceeeeeeEE
Confidence            99998764320         011111111221 122222111  11224567789999999999999 9999998775

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=98.97  E-value=1.3e-08  Score=93.89  Aligned_cols=165  Identities=12%  Similarity=0.174  Sum_probs=89.6

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcC-cccc-cceeeecCCcc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSL-PQQR-EYYSAGVPGSF  105 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l-~~~~-~~f~~~vpgSF  105 (332)
                      ++.-+|+|+|||+|..++.+.+.        +       ..+..+|+--|+-. +.-...+.. .... ..-+.-+-|.+
T Consensus        69 ~~~~~vLDlGcGtG~~~~~la~~--------~-------~~~~~~v~gvD~s~-~ml~~A~~~~~~~~~~~~v~~~~~D~  132 (261)
T 4gek_A           69 QPGTQVYDLGCSLGAATLSVRRN--------I-------HHDNCKIIAIDNSP-AMIERCRRHIDAYKAPTPVDVIEGDI  132 (261)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHT--------C-------CSSSCEEEEEESCH-HHHHHHHHHHHTSCCSSCEEEEESCT
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHh--------c-------CCCCCEEEEEECCH-HHHHHHHHHHHhhccCceEEEeeccc
Confidence            45679999999999998776431        1       12234444444321 111222211 1100 11122233444


Q ss_pred             ccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeE
Q 044174          106 HHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMM  185 (332)
Q Consensus       106 y~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~m  185 (332)
                      .+  +|-+++|+++|+++|||+..                                    .|...+|+.-++-|+|||+|
T Consensus       133 ~~--~~~~~~d~v~~~~~l~~~~~------------------------------------~~~~~~l~~i~~~LkpGG~l  174 (261)
T 4gek_A          133 RD--IAIENASMVVLNFTLQFLEP------------------------------------SERQALLDKIYQGLNPGGAL  174 (261)
T ss_dssp             TT--CCCCSEEEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHHEEEEEEE
T ss_pred             cc--ccccccccceeeeeeeecCc------------------------------------hhHhHHHHHHHHHcCCCcEE
Confidence            33  34557999999999999642                                    13345677777889999999


Q ss_pred             EEEecccCCCCCCCCcchhHHHHHHHHHHHHHHH-hhccchhh---hcccCcCcccCCHHHHHHHHHhCCceEE
Q 044174          186 VIIMPGIPYGMPYSHLTNGVMYDLMATIFMELAN-EQLITEAE---LDSFNLPIYSASSEEMVKLVDKNGHFSI  255 (332)
Q Consensus       186 vl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~-eGli~~e~---~d~fn~P~y~ps~~E~~~~ie~~G~F~I  255 (332)
                      ++.-......        ....+.+...+.+... .|+-+.+-   ...........|.+|+++.+++.| |+.
T Consensus       175 ii~e~~~~~~--------~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~s~~~~~~~L~~AG-F~~  239 (261)
T 4gek_A          175 VLSEKFSFED--------AKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARLHKAG-FEH  239 (261)
T ss_dssp             EEEEEBCCSS--------HHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCBCHHHHHHHHHHHT-CSE
T ss_pred             EEEeccCCCC--------HHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcccccCCCHHHHHHHHHHcC-CCe
Confidence            9975443321        1122333333333322 24322111   011111233468999999999999 863

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=98.97  E-value=2.2e-07  Score=85.30  Aligned_cols=116  Identities=12%  Similarity=0.129  Sum_probs=68.2

Q ss_pred             CceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEeccc
Q 044174          113 SSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIMPGI  192 (332)
Q Consensus       113 ~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~~~gr  192 (332)
                      +++|+|+|..++|++..                                    .|+..+|+.-.+-|+|||++++.....
T Consensus       128 ~~fD~v~~~~~l~~~~~------------------------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~  171 (287)
T 1kpg_A          128 EPVDRIVSIGAFEHFGH------------------------------------ERYDAFFSLAHRLLPADGVMLLHTITG  171 (287)
T ss_dssp             CCCSEEEEESCGGGTCT------------------------------------TTHHHHHHHHHHHSCTTCEEEEEEEEE
T ss_pred             CCeeEEEEeCchhhcCh------------------------------------HHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence            78999999999999743                                    123346666678899999999998765


Q ss_pred             CCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcC-cccCCHHHHHHHHHhCCceEEeEEEEeCCCCCCCCCc
Q 044174          193 PYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLP-IYSASSEEMVKLVDKNGHFSIKTVELTNPTSWLEGPI  271 (332)
Q Consensus       193 ~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P-~y~ps~~E~~~~ie~~G~F~I~~le~~~p~~~~~~~~  271 (332)
                      .+.......+......  ...+.+.....+          .| ...||.+++.+++++.| |++..++.+.+       .
T Consensus       172 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~----------~~~~~~~s~~~~~~~l~~aG-f~~~~~~~~~~-------~  231 (287)
T 1kpg_A          172 LHPKEIHERGLPMSFT--FARFLKFIVTEI----------FPGGRLPSIPMVQECASANG-FTVTRVQSLQP-------H  231 (287)
T ss_dssp             CCHHHHTTTTCSCHHH--HHHHHHHHHHHT----------STTCCCCCHHHHHHHHHTTT-CEEEEEEECHH-------H
T ss_pred             CCcccccccccccccc--ccchhhhHHhee----------CCCCCCCCHHHHHHHHHhCC-cEEEEEEeCcH-------h
Confidence            4311000000000000  011111111111          12 25679999999999999 99988875532       1


Q ss_pred             cHHHHHHHHHHHH
Q 044174          272 DIKAWTMHVRAAM  284 (332)
Q Consensus       272 ~~~~~a~~iRa~~  284 (332)
                      ++..+..|.+.+.
T Consensus       232 y~~~~~~w~~~~~  244 (287)
T 1kpg_A          232 YAKTLDLWSAALQ  244 (287)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            3345555655443

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=98.93  E-value=1.7e-07  Score=85.23  Aligned_cols=168  Identities=7%  Similarity=-0.034  Sum_probs=95.5

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCc-----hHHHHhcC-cccc-cceeee
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSND-----FNTLFTSL-PQQR-EYYSAG  100 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~ND-----Fn~lf~~l-~~~~-~~f~~~  100 (332)
                      ....+|+|+|||+|..++.+....                .|..+|+--|+-...     .-...+.. .... .--+..
T Consensus        42 ~~~~~vLDiGcG~G~~~~~l~~~~----------------g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~  105 (275)
T 3bkx_A           42 KPGEKILEIGCGQGDLSAVLADQV----------------GSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTV  105 (275)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHH----------------CTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHh----------------CCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEE
Confidence            445799999999999988765421                123466666765541     22222221 1110 011223


Q ss_pred             cCCc-cc--cCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 044174          101 VPGS-FH--HRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAE  177 (332)
Q Consensus       101 vpgS-Fy--~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~  177 (332)
                      +.++ +.  ...+|++++|+++|+.++|++....                                      .+++....
T Consensus       106 ~~~d~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~--------------------------------------~~~~~~~~  147 (275)
T 3bkx_A          106 HFNTNLSDDLGPIADQHFDRVVLAHSLWYFASAN--------------------------------------ALALLFKN  147 (275)
T ss_dssp             ECSCCTTTCCGGGTTCCCSEEEEESCGGGSSCHH--------------------------------------HHHHHHHH
T ss_pred             EECChhhhccCCCCCCCEEEEEEccchhhCCCHH--------------------------------------HHHHHHHH
Confidence            3443 33  3346789999999999999965411                                      13333334


Q ss_pred             hhccCCeEEEEecccCCCCCCCCcchhHHHHHHHH-HHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEe
Q 044174          178 EIVSGGMMVIIMPGIPYGMPYSHLTNGVMYDLMAT-IFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIK  256 (332)
Q Consensus       178 EL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~-al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~  256 (332)
                      -++|||++++...........   ....++..+.. .+...         ..+.....+.++|.+++++++++.| |++.
T Consensus       148 l~~~gG~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~s~~~l~~~l~~aG-f~~~  214 (275)
T 3bkx_A          148 MAAVCDHVDVAEWSMQPTALD---QIGHLQAAMIQGLLYAI---------APSDVANIRTLITPDTLAQIAHDNT-WTYT  214 (275)
T ss_dssp             HTTTCSEEEEEEECSSCSSGG---GHHHHHHHHHHHHHHHH---------SCCTTCSCCCCCCHHHHHHHHHHHT-CEEE
T ss_pred             HhCCCCEEEEEEecCCCCchh---hhhHHHHHHHHHHHhhc---------cccccccccccCCHHHHHHHHHHCC-CeeE
Confidence            455699999987765433210   11111111111 11111         0112234556899999999999999 9998


Q ss_pred             EEEEeC
Q 044174          257 TVELTN  262 (332)
Q Consensus       257 ~le~~~  262 (332)
                      +.+.+.
T Consensus       215 ~~~~~~  220 (275)
T 3bkx_A          215 AGTIVE  220 (275)
T ss_dssp             ECCCBC
T ss_pred             EEEEec
Confidence            888664

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=98.93  E-value=1.8e-08  Score=93.50  Aligned_cols=159  Identities=11%  Similarity=0.105  Sum_probs=88.3

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCc-c---cccceeeecCC
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLP-Q---QREYYSAGVPG  103 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~-~---~~~~f~~~vpg  103 (332)
                      ....+|+|+|||+|..|+.++..+..    .+.       .-.+.+...|. +-+.-...+... .   ..++-+.-..+
T Consensus        51 ~~~~~VLDiG~GtG~~~~~~l~~l~~----~~~-------~~~v~~~~vD~-S~~ml~~a~~~~~~~~~~~~v~~~~~~~  118 (292)
T 2aot_A           51 KSEIKILSIGGGAGEIDLQILSKVQA----QYP-------GVCINNEVVEP-SAEQIAKYKELVAKTSNLENVKFAWHKE  118 (292)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHH----HST-------TCEEEEEEECS-CHHHHHHHHHHHHTCSSCTTEEEEEECS
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHHHh----hCC-------CceeeEEEEeC-CHHHHHHHHHHHHhccCCCcceEEEEec
Confidence            45689999999999877665544322    110       01123355553 222222222211 0   01111111122


Q ss_pred             cccc------CCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 044174          104 SFHH------RLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAE  177 (332)
Q Consensus       104 SFy~------~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~  177 (332)
                      ..-.      +-|+++++|+|+|+.+|||+...                                      ..+|+.-++
T Consensus       119 ~~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~d~--------------------------------------~~~l~~~~r  160 (292)
T 2aot_A          119 TSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDI--------------------------------------PATLKFFHS  160 (292)
T ss_dssp             CHHHHHHHHHTTTCCCCEEEEEEESCGGGCSCH--------------------------------------HHHHHHHHH
T ss_pred             chhhhhhhhccccCCCceeEEEEeeeeeecCCH--------------------------------------HHHHHHHHH
Confidence            2211      12678999999999999997542                                      234555667


Q ss_pred             hhccCCeEEEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeE
Q 044174          178 EIVSGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKT  257 (332)
Q Consensus       178 EL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~  257 (332)
                      -|||||++++.......           .|   ...|..... . +.      ..-...+++.+++.+++++.| |++..
T Consensus       161 ~LkpgG~l~i~~~~~~~-----------~~---~~~~~~~~~-~-~~------~~~~~~~~~~~~~~~~l~~aG-f~~~~  217 (292)
T 2aot_A          161 LLGTNAKMLIIVVSGSS-----------GW---DKLWKKYGS-R-FP------QDDLCQYITSDDLTQMLDNLG-LKYEC  217 (292)
T ss_dssp             TEEEEEEEEEEEECTTS-----------HH---HHHHHHHGG-G-SC------CCTTCCCCCHHHHHHHHHHHT-CCEEE
T ss_pred             HcCCCcEEEEEEecCCc-----------cH---HHHHHHHHH-h-cc------CCCcccCCCHHHHHHHHHHCC-CceEE
Confidence            88999999998754321           11   122222211 1 10      001235688999999999999 98876


Q ss_pred             EE
Q 044174          258 VE  259 (332)
Q Consensus       258 le  259 (332)
                      .+
T Consensus       218 ~~  219 (292)
T 2aot_A          218 YD  219 (292)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=98.93  E-value=1.6e-07  Score=86.59  Aligned_cols=152  Identities=14%  Similarity=0.046  Sum_probs=93.0

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcc--cccceeeecCCcc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQ--QREYYSAGVPGSF  105 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~--~~~~f~~~vpgSF  105 (332)
                      ....+|+|+|||+|..+..+++..           +       .+|+.-|+.. ......+....  ...--+..+.+++
T Consensus        81 ~~~~~vLDiGcG~G~~~~~l~~~~-----------~-------~~v~gvD~s~-~~~~~a~~~~~~~~~~~~~~~~~~d~  141 (297)
T 2o57_A           81 QRQAKGLDLGAGYGGAARFLVRKF-----------G-------VSIDCLNIAP-VQNKRNEEYNNQAGLADNITVKYGSF  141 (297)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHH-----------C-------CEEEEEESCH-HHHHHHHHHHHHHTCTTTEEEEECCT
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHh-----------C-------CEEEEEeCCH-HHHHHHHHHHHhcCCCcceEEEEcCc
Confidence            446799999999999998775431           0       1333334321 11111111100  0001133345666


Q ss_pred             ccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeE
Q 044174          106 HHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMM  185 (332)
Q Consensus       106 y~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~m  185 (332)
                      ..-.+|++++|+|+|+.++||+.. |                                     ..+|+.-.+-|+|||++
T Consensus       142 ~~~~~~~~~fD~v~~~~~l~~~~~-~-------------------------------------~~~l~~~~~~LkpgG~l  183 (297)
T 2o57_A          142 LEIPCEDNSYDFIWSQDAFLHSPD-K-------------------------------------LKVFQECARVLKPRGVM  183 (297)
T ss_dssp             TSCSSCTTCEEEEEEESCGGGCSC-H-------------------------------------HHHHHHHHHHEEEEEEE
T ss_pred             ccCCCCCCCEeEEEecchhhhcCC-H-------------------------------------HHHHHHHHHHcCCCeEE
Confidence            666788999999999999999654 1                                     13566666788999999


Q ss_pred             EEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEe
Q 044174          186 VIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELT  261 (332)
Q Consensus       186 vl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~  261 (332)
                      ++......+....     .    .+...+..              +..| .+++.+++++++++.| |++..++.+
T Consensus       184 ~~~~~~~~~~~~~-----~----~~~~~~~~--------------~~~~-~~~~~~~~~~~l~~aG-f~~~~~~~~  234 (297)
T 2o57_A          184 AITDPMKEDGIDK-----S----SIQPILDR--------------IKLH-DMGSLGLYRSLAKECG-LVTLRTFSR  234 (297)
T ss_dssp             EEEEEEECTTCCG-----G----GGHHHHHH--------------HTCS-SCCCHHHHHHHHHHTT-EEEEEEEEC
T ss_pred             EEEEeccCCCCch-----H----HHHHHHHH--------------hcCC-CCCCHHHHHHHHHHCC-CeEEEEEEC
Confidence            9998765442210     1    11111111              1123 3579999999999999 998887755

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=98.91  E-value=4.5e-09  Score=94.31  Aligned_cols=146  Identities=14%  Similarity=0.149  Sum_probs=92.7

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCcccc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHH  107 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~  107 (332)
                      ++..+|+|+|||+|..+..+.+.            +       .+|+-.|+-. +.-...+..       +..+.+....
T Consensus        40 ~~~~~vLDiGcG~G~~~~~l~~~------------~-------~~v~gvD~s~-~~~~~a~~~-------~~~~~~d~~~   92 (240)
T 3dli_A           40 KGCRRVLDIGCGRGEFLELCKEE------------G-------IESIGVDINE-DMIKFCEGK-------FNVVKSDAIE   92 (240)
T ss_dssp             TTCSCEEEETCTTTHHHHHHHHH------------T-------CCEEEECSCH-HHHHHHHTT-------SEEECSCHHH
T ss_pred             cCCCeEEEEeCCCCHHHHHHHhC------------C-------CcEEEEECCH-HHHHHHHhh-------cceeeccHHH
Confidence            44679999999999988765432            0       1233334311 111111111       2233444443


Q ss_pred             C--CcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeE
Q 044174          108 R--LFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMM  185 (332)
Q Consensus       108 ~--lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~m  185 (332)
                      -  .+|++++|+|+|+.++||+..                                    .|+..+|+.-.+-|+|||++
T Consensus        93 ~~~~~~~~~fD~i~~~~~l~~~~~------------------------------------~~~~~~l~~~~~~LkpgG~l  136 (240)
T 3dli_A           93 YLKSLPDKYLDGVMISHFVEHLDP------------------------------------ERLFELLSLCYSKMKYSSYI  136 (240)
T ss_dssp             HHHTSCTTCBSEEEEESCGGGSCG------------------------------------GGHHHHHHHHHHHBCTTCCE
T ss_pred             HhhhcCCCCeeEEEECCchhhCCc------------------------------------HHHHHHHHHHHHHcCCCcEE
Confidence            2  578999999999999999752                                    13445777777899999999


Q ss_pred             EEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEeCCC
Q 044174          186 VIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELTNPT  264 (332)
Q Consensus       186 vl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~p~  264 (332)
                      ++...+..+           ...     +.+.    .+       ..--.++++.++++.++++.| |++..++.+.|.
T Consensus       137 ~~~~~~~~~-----------~~~-----~~~~----~~-------~~~~~~~~~~~~l~~~l~~aG-f~~~~~~~~~~~  187 (240)
T 3dli_A          137 VIESPNPTS-----------LYS-----LINF----YI-------DPTHKKPVHPETLKFILEYLG-FRDVKIEFFEEC  187 (240)
T ss_dssp             EEEEECTTS-----------HHH-----HHHH----TT-------STTCCSCCCHHHHHHHHHHHT-CEEEEEEEECCC
T ss_pred             EEEeCCcch-----------hHH-----HHHH----hc-------CccccccCCHHHHHHHHHHCC-CeEEEEEEeccC
Confidence            998876322           111     1110    11       111235678899999999999 999999988754

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=98.89  E-value=2e-08  Score=91.08  Aligned_cols=155  Identities=14%  Similarity=0.205  Sum_probs=89.7

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCccccc-ceeeecCCccc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQRE-YYSAGVPGSFH  106 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~-~f~~~vpgSFy  106 (332)
                      ....+|+|+|||+|..+..+.+.                 .+  +|+..|+-. +.-...+....... --+..+.+++.
T Consensus        36 ~~~~~vLDiGcG~G~~~~~l~~~-----------------~~--~v~gvD~s~-~~l~~a~~~~~~~~~~~v~~~~~d~~   95 (260)
T 1vl5_A           36 KGNEEVLDVATGGGHVANAFAPF-----------------VK--KVVAFDLTE-DILKVARAFIEGNGHQQVEYVQGDAE   95 (260)
T ss_dssp             CSCCEEEEETCTTCHHHHHHGGG-----------------SS--EEEEEESCH-HHHHHHHHHHHHTTCCSEEEEECCC-
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHh-----------------CC--EEEEEeCCH-HHHHHHHHHHHhcCCCceEEEEecHH
Confidence            34579999999999988766421                 01  344444321 11111111100000 01223445556


Q ss_pred             cCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEE
Q 044174          107 HRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMV  186 (332)
Q Consensus       107 ~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mv  186 (332)
                      ...||++++|+++|+.++||+...+                                      .+|+.-.+-|+|||+++
T Consensus        96 ~l~~~~~~fD~V~~~~~l~~~~d~~--------------------------------------~~l~~~~r~LkpgG~l~  137 (260)
T 1vl5_A           96 QMPFTDERFHIVTCRIAAHHFPNPA--------------------------------------SFVSEAYRVLKKGGQLL  137 (260)
T ss_dssp             CCCSCTTCEEEEEEESCGGGCSCHH--------------------------------------HHHHHHHHHEEEEEEEE
T ss_pred             hCCCCCCCEEEEEEhhhhHhcCCHH--------------------------------------HHHHHHHHHcCCCCEEE
Confidence            6568899999999999999974311                                      34555567889999999


Q ss_pred             EEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEeC
Q 044174          187 IIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELTN  262 (332)
Q Consensus       187 l~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~  262 (332)
                      +.....++.         .........+..+.          +.  ....+.+.+++.+++++.| |++..++.+.
T Consensus       138 ~~~~~~~~~---------~~~~~~~~~~~~~~----------~~--~~~~~~~~~~~~~~l~~aG-f~~~~~~~~~  191 (260)
T 1vl5_A          138 LVDNSAPEN---------DAFDVFYNYVEKER----------DY--SHHRAWKKSDWLKMLEEAG-FELEELHCFH  191 (260)
T ss_dssp             EEEEEBCSS---------HHHHHHHHHHHHHH----------CT--TCCCCCBHHHHHHHHHHHT-CEEEEEEEEE
T ss_pred             EEEcCCCCC---------HHHHHHHHHHHHhc----------Cc--cccCCCCHHHHHHHHHHCC-CeEEEEEEee
Confidence            986554321         11111111111110          11  1224568999999999999 9998888664

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=98.88  E-value=1.2e-08  Score=93.05  Aligned_cols=193  Identities=14%  Similarity=0.147  Sum_probs=111.3

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCcccc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHH  107 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~  107 (332)
                      .+..+|+|+|||+|..+..+.+                   +..+|+-.|+-.     -.-...... .-+..+-+++..
T Consensus        33 ~~~~~vLDiGcG~G~~~~~l~~-------------------~~~~v~gvD~s~-----~~~~~a~~~-~~~~~~~~d~~~   87 (261)
T 3ege_A           33 PKGSVIADIGAGTGGYSVALAN-------------------QGLFVYAVEPSI-----VMRQQAVVH-PQVEWFTGYAEN   87 (261)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHT-------------------TTCEEEEECSCH-----HHHHSSCCC-TTEEEECCCTTS
T ss_pred             CCCCEEEEEcCcccHHHHHHHh-------------------CCCEEEEEeCCH-----HHHHHHHhc-cCCEEEECchhh
Confidence            4467999999999998877642                   124566666532     111111111 023345566666


Q ss_pred             CCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEE
Q 044174          108 RLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVI  187 (332)
Q Consensus       108 ~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl  187 (332)
                      -.+|++++|+|+|+.++||+..                                      +..+|+.-.+-|+ ||++++
T Consensus        88 ~~~~~~~fD~v~~~~~l~~~~~--------------------------------------~~~~l~~~~~~Lk-gG~~~~  128 (261)
T 3ege_A           88 LALPDKSVDGVISILAIHHFSH--------------------------------------LEKSFQEMQRIIR-DGTIVL  128 (261)
T ss_dssp             CCSCTTCBSEEEEESCGGGCSS--------------------------------------HHHHHHHHHHHBC-SSCEEE
T ss_pred             CCCCCCCEeEEEEcchHhhccC--------------------------------------HHHHHHHHHHHhC-CcEEEE
Confidence            6688999999999999999632                                      3346666678999 998888


Q ss_pred             EecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEeC-CCCC
Q 044174          188 IMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELTN-PTSW  266 (332)
Q Consensus       188 ~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~-p~~~  266 (332)
                      ...+.......   ...   ..+.....    .            ...++++.+++. .+++.| |++...+.+. |...
T Consensus       129 ~~~~~~~~~~~---~~~---~~~~~~~~----~------------~~~~~~~~~~~~-~l~~aG-F~~v~~~~~~~p~~~  184 (261)
T 3ege_A          129 LTFDIRLAQRI---WLY---DYFPFLWE----D------------ALRFLPLDEQIN-LLQENT-KRRVEAIPFLLPHDL  184 (261)
T ss_dssp             EEECGGGCCCC---GGG---GTCHHHHH----H------------HHTSCCHHHHHH-HHHHHH-CSEEEEEECCEETTC
T ss_pred             EEcCCchhHHH---HHH---HHHHHHhh----h------------hhhhCCCHHHHH-HHHHcC-CCceeEEEecCCCcC
Confidence            87654332110   111   11111111    0            113567889999 999999 9988888775 4322


Q ss_pred             CC--CCc----cHHHHHHHHHHHHhhHHHhhhCHHHHHHHHHHHHHHHHh
Q 044174          267 LE--GPI----DIKAWTMHVRAAMEAMFSKHFRIEIIDEMFNRLIRRLFE  310 (332)
Q Consensus       267 ~~--~~~----~~~~~a~~iRa~~epll~~hfg~~i~delf~r~~~~v~~  310 (332)
                      .+  .+.    -+.-.....+...+. +. .+.++.++.+.+++.+.+++
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~e~~~~~~~~~~~l~~  232 (261)
T 3ege_A          185 SDLFAAAAWRRPELYLKAEVRAGISS-FA-LANQDLVEKGLELLTADLNN  232 (261)
T ss_dssp             SBCCTTTTTTCGGGGGSHHHHHTSHH-HH-HSCHHHHHHHHHHHHHHHHT
T ss_pred             cchhhHHhccCchhhcCcchhccccc-ee-ecCHHHHHHHHHHHHHHHhc
Confidence            11  010    111111122222222 22 35677777777777777665

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=98.87  E-value=5.1e-08  Score=87.48  Aligned_cols=148  Identities=11%  Similarity=0.099  Sum_probs=91.2

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCcccc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHH  107 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~  107 (332)
                      ....+|+|+|||+|..+..+++...                  -+|+..|.-. ..-...+...... .-+..+.+++..
T Consensus        92 ~~~~~vLDiG~G~G~~~~~l~~~~~------------------~~v~~vD~s~-~~~~~a~~~~~~~-~~~~~~~~d~~~  151 (254)
T 1xtp_A           92 HGTSRALDCGAGIGRITKNLLTKLY------------------ATTDLLEPVK-HMLEEAKRELAGM-PVGKFILASMET  151 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHHC------------------SEEEEEESCH-HHHHHHHHHTTTS-SEEEEEESCGGG
T ss_pred             cCCCEEEEECCCcCHHHHHHHHhhc------------------CEEEEEeCCH-HHHHHHHHHhccC-CceEEEEccHHH
Confidence            4467999999999999987765320                  0122222111 1111111111000 112234455555


Q ss_pred             CCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEE
Q 044174          108 RLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVI  187 (332)
Q Consensus       108 ~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl  187 (332)
                      -.+|++++|+++++.++|+++.                                    .|+..+|+.-.+-|+|||++++
T Consensus       152 ~~~~~~~fD~v~~~~~l~~~~~------------------------------------~~~~~~l~~~~~~LkpgG~l~i  195 (254)
T 1xtp_A          152 ATLPPNTYDLIVIQWTAIYLTD------------------------------------ADFVKFFKHCQQALTPNGYIFF  195 (254)
T ss_dssp             CCCCSSCEEEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CCCCCCCeEEEEEcchhhhCCH------------------------------------HHHHHHHHHHHHhcCCCeEEEE
Confidence            5578899999999999999642                                    2445677777788999999999


Q ss_pred             EecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEeC
Q 044174          188 IMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELTN  262 (332)
Q Consensus       188 ~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~  262 (332)
                      ..........                        .      .....+.+.++.+++++++++.| |++.+++...
T Consensus       196 ~~~~~~~~~~------------------------~------~~~~~~~~~~~~~~~~~~l~~aG-f~~~~~~~~~  239 (254)
T 1xtp_A          196 KENCSTGDRF------------------------L------VDKEDSSLTRSDIHYKRLFNESG-VRVVKEAFQE  239 (254)
T ss_dssp             EEEBC--CCE------------------------E------EETTTTEEEBCHHHHHHHHHHHT-CCEEEEEECT
T ss_pred             EecCCCcccc------------------------e------ecccCCcccCCHHHHHHHHHHCC-CEEEEeeecC
Confidence            8753221110                        0      00123446789999999999999 9998887664

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=98.86  E-value=7.1e-08  Score=86.58  Aligned_cols=155  Identities=18%  Similarity=0.236  Sum_probs=89.0

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcC-cccccceeeecCCccc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSL-PQQREYYSAGVPGSFH  106 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l-~~~~~~f~~~vpgSFy  106 (332)
                      ....+|+|+|||+|..+..+.+..                 +  +|+..|.-. +.-...+.. .....--+..+.+.+.
T Consensus        20 ~~~~~vLDiGcG~G~~~~~l~~~~-----------------~--~v~~vD~s~-~~~~~a~~~~~~~~~~~v~~~~~d~~   79 (239)
T 1xxl_A           20 RAEHRVLDIGAGAGHTALAFSPYV-----------------Q--ECIGVDATK-EMVEVASSFAQEKGVENVRFQQGTAE   79 (239)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGGS-----------------S--EEEEEESCH-HHHHHHHHHHHHHTCCSEEEEECBTT
T ss_pred             CCCCEEEEEccCcCHHHHHHHHhC-----------------C--EEEEEECCH-HHHHHHHHHHHHcCCCCeEEEecccc
Confidence            446799999999999887764210                 1  333333311 111111111 0000001222344555


Q ss_pred             cCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEE
Q 044174          107 HRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMV  186 (332)
Q Consensus       107 ~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mv  186 (332)
                      ...+|++++|+++|+.++||+...                                      ..+|+.-++-|+|||+++
T Consensus        80 ~~~~~~~~fD~v~~~~~l~~~~~~--------------------------------------~~~l~~~~~~LkpgG~l~  121 (239)
T 1xxl_A           80 SLPFPDDSFDIITCRYAAHHFSDV--------------------------------------RKAVREVARVLKQDGRFL  121 (239)
T ss_dssp             BCCSCTTCEEEEEEESCGGGCSCH--------------------------------------HHHHHHHHHHEEEEEEEE
T ss_pred             cCCCCCCcEEEEEECCchhhccCH--------------------------------------HHHHHHHHHHcCCCcEEE
Confidence            555788999999999999996431                                      235566667889999999


Q ss_pred             EEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEeC
Q 044174          187 IIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELTN  262 (332)
Q Consensus       187 l~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~  262 (332)
                      +.....++.         ...+.+...+..+ .         +.  ......+.+++.+++++.| |++..++.+.
T Consensus       122 ~~~~~~~~~---------~~~~~~~~~~~~~-~---------~~--~~~~~~~~~~~~~ll~~aG-f~~~~~~~~~  175 (239)
T 1xxl_A          122 LVDHYAPED---------PVLDEFVNHLNRL-R---------DP--SHVRESSLSEWQAMFSANQ-LAYQDIQKWN  175 (239)
T ss_dssp             EEEECBCSS---------HHHHHHHHHHHHH-H---------CT--TCCCCCBHHHHHHHHHHTT-EEEEEEEEEE
T ss_pred             EEEcCCCCC---------hhHHHHHHHHHHh-c---------cc--cccCCCCHHHHHHHHHHCC-CcEEEEEeec
Confidence            986554321         1111222222111 0         11  1123458999999999999 9988888664

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=98.85  E-value=6.3e-08  Score=85.32  Aligned_cols=88  Identities=10%  Similarity=0.056  Sum_probs=59.0

Q ss_pred             CccccCCcCC-CceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 044174          103 GSFHHRLFPQ-SSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVS  181 (332)
Q Consensus       103 gSFy~~lfP~-~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~p  181 (332)
                      |++..-.+++ +++|+|++..++|++..                                    .|...+|+.-++-|+|
T Consensus        89 ~d~~~l~~~~~~~fD~v~~~~~l~~l~~------------------------------------~~~~~~l~~~~r~Lkp  132 (203)
T 1pjz_A           89 GDFFALTARDIGHCAAFYDRAAMIALPA------------------------------------DMRERYVQHLEALMPQ  132 (203)
T ss_dssp             ECCSSSTHHHHHSEEEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHHSCS
T ss_pred             CccccCCcccCCCEEEEEECcchhhCCH------------------------------------HHHHHHHHHHHHHcCC
Confidence            3444434444 79999999999999642                                    1233466677788999


Q ss_pred             CCeEEEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEe
Q 044174          182 GGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELT  261 (332)
Q Consensus       182 GG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~  261 (332)
                      ||++++.....+..                                  ...-|.|..+.+|+++.+++ | |++..++..
T Consensus       133 gG~~~l~~~~~~~~----------------------------------~~~~~~~~~~~~el~~~~~~-g-f~i~~~~~~  176 (203)
T 1pjz_A          133 ACSGLLITLEYDQA----------------------------------LLEGPPFSVPQTWLHRVMSG-N-WEVTKVGGQ  176 (203)
T ss_dssp             EEEEEEEEESSCSS----------------------------------SSSSCCCCCCHHHHHHTSCS-S-EEEEEEEES
T ss_pred             CcEEEEEEEecCcc----------------------------------ccCCCCCCCCHHHHHHHhcC-C-cEEEEeccc
Confidence            99966555332100                                  01123455789999999998 8 999988876


Q ss_pred             C
Q 044174          262 N  262 (332)
Q Consensus       262 ~  262 (332)
                      +
T Consensus       177 ~  177 (203)
T 1pjz_A          177 D  177 (203)
T ss_dssp             S
T ss_pred             c
Confidence            5

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=98.84  E-value=1.4e-08  Score=94.97  Aligned_cols=101  Identities=11%  Similarity=0.205  Sum_probs=65.2

Q ss_pred             CCCceeEEEecCccccc-cCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEe
Q 044174          111 PQSSIHFAHCSYALHWL-SKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIM  189 (332)
Q Consensus       111 P~~svd~~~S~~alHWL-s~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~~  189 (332)
                      |++++|+|+|+.++||+ ...                                   .|...+|+.-++-|+|||++++..
T Consensus       111 ~~~~fD~V~~~~~l~~~~~~~-----------------------------------~~~~~~l~~~~~~LkpgG~li~~~  155 (313)
T 3bgv_A          111 PQMCFDICSCQFVCHYSFESY-----------------------------------EQADMMLRNACERLSPGGYFIGTT  155 (313)
T ss_dssp             TTCCEEEEEEETCGGGGGGSH-----------------------------------HHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             CCCCEEEEEEecchhhccCCH-----------------------------------HHHHHHHHHHHHHhCCCcEEEEec
Confidence            35699999999999997 221                                   244567777788999999999998


Q ss_pred             cccCCCCCCCCcchhHHHHHHHHHHHHHHH--hh-------ccchhhh------------cccCcCcccCCHHHHHHHHH
Q 044174          190 PGIPYGMPYSHLTNGVMYDLMATIFMELAN--EQ-------LITEAEL------------DSFNLPIYSASSEEMVKLVD  248 (332)
Q Consensus       190 ~gr~~~~~~~~~~~~~~~~~l~~al~~mv~--eG-------li~~e~~------------d~fn~P~y~ps~~E~~~~ie  248 (332)
                      ++..               .+...|...-.  -|       ..+.+.+            .....|.|..+.+++.++++
T Consensus       156 ~~~~---------------~l~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~f~l~~~~~~~~~~~~~~~~~~l~~  220 (313)
T 3bgv_A          156 PNSF---------------ELIRRLEASETESFGNEIYTVKFQKKGDYPLFGCKYDFNLEGVVDVPEFLVYFPLLNEMAK  220 (313)
T ss_dssp             ECHH---------------HHHHHHTTSSSSEEECSSEEEEESCSSCCCSSCCEEEEEEC---CCEEECCCHHHHHHHGG
T ss_pred             CChH---------------HHHHHHHhhccCccCCeeEEEEeCCCCCCCCccceEEEEECCcccCcceEEcHHHHHHHHH
Confidence            7631               11222221100  00       0010010            22356778889999999999


Q ss_pred             hCCceEEeEEEEeC
Q 044174          249 KNGHFSIKTVELTN  262 (332)
Q Consensus       249 ~~G~F~I~~le~~~  262 (332)
                      +.| |++...+.|.
T Consensus       221 ~~G-~~~v~~~~f~  233 (313)
T 3bgv_A          221 KYN-MKLVYKKTFL  233 (313)
T ss_dssp             GGT-EEEEEEEEHH
T ss_pred             HcC-cEEEEecCHH
Confidence            999 9998877664

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=98.84  E-value=2.9e-07  Score=85.96  Aligned_cols=116  Identities=15%  Similarity=0.141  Sum_probs=68.1

Q ss_pred             CceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEeccc
Q 044174          113 SSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIMPGI  192 (332)
Q Consensus       113 ~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~~~gr  192 (332)
                      +++|+++|+.++|++..                                    .|...+|+.-.+-|+|||++++.....
T Consensus       154 ~~fD~v~~~~~l~~~~~------------------------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~  197 (318)
T 2fk8_A          154 EPVDRIVSIEAFEHFGH------------------------------------ENYDDFFKRCFNIMPADGRMTVQSSVS  197 (318)
T ss_dssp             CCCSEEEEESCGGGTCG------------------------------------GGHHHHHHHHHHHSCTTCEEEEEEEEC
T ss_pred             CCcCEEEEeChHHhcCH------------------------------------HHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            78999999999999642                                    133456666678899999999998775


Q ss_pred             CCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcC-cccCCHHHHHHHHHhCCceEEeEEEEeCCCCCCCCCc
Q 044174          193 PYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLP-IYSASSEEMVKLVDKNGHFSIKTVELTNPTSWLEGPI  271 (332)
Q Consensus       193 ~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P-~y~ps~~E~~~~ie~~G~F~I~~le~~~p~~~~~~~~  271 (332)
                      .+......  .+.....-...+.+...+          ...| .+.|+.+++.+++++.| |++..++.+.+       .
T Consensus       198 ~~~~~~~~--~~~~~~~~~~~~~~~~~~----------~~~~~~~~~s~~~~~~~l~~aG-f~~~~~~~~~~-------~  257 (318)
T 2fk8_A          198 YHPYEMAA--RGKKLSFETARFIKFIVT----------EIFPGGRLPSTEMMVEHGEKAG-FTVPEPLSLRP-------H  257 (318)
T ss_dssp             CCHHHHHT--TCHHHHHHHHHHHHHHHH----------HTSTTCCCCCHHHHHHHHHHTT-CBCCCCEECHH-------H
T ss_pred             CCchhhhh--ccccccccccchhhHHHH----------hcCCCCcCCCHHHHHHHHHhCC-CEEEEEEecch-------h
Confidence            43110000  000000000111111111          1123 46789999999999999 99877665421       1


Q ss_pred             cHHHHHHHHHHHH
Q 044174          272 DIKAWTMHVRAAM  284 (332)
Q Consensus       272 ~~~~~a~~iRa~~  284 (332)
                      ++..+..|.+.+.
T Consensus       258 y~~~~~~w~~~~~  270 (318)
T 2fk8_A          258 YIKTLRIWGDTLQ  270 (318)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            3345555655443

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=98.83  E-value=7.8e-08  Score=90.50  Aligned_cols=179  Identities=14%  Similarity=0.176  Sum_probs=96.3

Q ss_pred             CCceEEEeecCCCCcchHHHH-------------HHHHHHHHHhhhhcCCCC--CCCceEEEecCCCCCchHHHHhcCcc
Q 044174           28 SNIIRLADLGCAVGSNTINAM-------------QDVLEVIKNKCHSQCPSS--KLPEFQVFFNDKTSNDFNTLFTSLPQ   92 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~-------------~~ii~~i~~~~~~~~~~~--~~~~~~v~~nDlp~NDFn~lf~~l~~   92 (332)
                      +...+|+|+|||+|..+..++             ...|+..++++...+...  ....+++...|.-++.|..-   |  
T Consensus        47 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~---l--  121 (302)
T 2vdw_A           47 SNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSS---V--  121 (302)
T ss_dssp             CSCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHH---H--
T ss_pred             CCCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhh---h--
Confidence            346799999999998876554             334555555543321000  00123444455544433220   0  


Q ss_pred             cccceeeecCCccccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHH
Q 044174           93 QREYYSAGVPGSFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFL  172 (332)
Q Consensus        93 ~~~~f~~~vpgSFy~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL  172 (332)
                                    ...+|++++|+|.|..++||+-..+                                   +...+|
T Consensus       122 --------------~~~~~~~~FD~V~~~~~lhy~~~~~-----------------------------------~~~~~l  152 (302)
T 2vdw_A          122 --------------REVFYFGKFNIIDWQFAIHYSFHPR-----------------------------------HYATVM  152 (302)
T ss_dssp             --------------HTTCCSSCEEEEEEESCGGGTCSTT-----------------------------------THHHHH
T ss_pred             --------------hccccCCCeeEEEECchHHHhCCHH-----------------------------------HHHHHH
Confidence                          1125778999999999999964422                                   113578


Q ss_pred             HHHHHhhccCCeEEEEecccCCCCCCCCcchhHHHH-HH-HHHHHHHH--Hhhcc--chhhhcccCcCcccCCHHHHHHH
Q 044174          173 NARAEEIVSGGMMVIIMPGIPYGMPYSHLTNGVMYD-LM-ATIFMELA--NEQLI--TEAELDSFNLPIYSASSEEMVKL  246 (332)
Q Consensus       173 ~~Ra~EL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~-~l-~~al~~mv--~eGli--~~e~~d~fn~P~y~ps~~E~~~~  246 (332)
                      +.-++-|||||+|++..+.+..-........-.++. .. ...|....  .+..+  ...+-.....|.|+-+.+|++++
T Consensus       153 ~~~~r~LkpGG~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~v~~~el~~l  232 (302)
T 2vdw_A          153 NNLSELTASGGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIADDRIVVYNPSTMSTPMTEYIIKKNDIVRV  232 (302)
T ss_dssp             HHHHHHEEEEEEEEEEEECHHHHTTCCSCEEEECCSSSCTTTSEEEECEEETTEEEEBCTTTBSSCEEEECCCHHHHHHH
T ss_pred             HHHHHHcCCCCEEEEEeCCHHHHHHHHhcCCcccccccccccceeeeccccccccceeeccccCCCceeeeeEHHHHHHH
Confidence            888899999999999987542211000000000000 00 00000000  00000  00000123467788899999999


Q ss_pred             HHhCCceEEeEEEEe
Q 044174          247 VDKNGHFSIKTVELT  261 (332)
Q Consensus       247 ie~~G~F~I~~le~~  261 (332)
                      +++.| |++.....+
T Consensus       233 ~~~~G-l~lv~~~~f  246 (302)
T 2vdw_A          233 FNEYG-FVLVDNVDF  246 (302)
T ss_dssp             HHHTT-EEEEEEEEH
T ss_pred             HHHCC-CEEEEecCh
Confidence            99999 998887765

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=98.83  E-value=5.2e-08  Score=86.92  Aligned_cols=140  Identities=15%  Similarity=0.130  Sum_probs=90.3

Q ss_pred             eEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCccc-ccceeeecCCccccCC
Q 044174           31 IRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQ-REYYSAGVPGSFHHRL  109 (332)
Q Consensus        31 ~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~-~~~f~~~vpgSFy~~l  109 (332)
                      .+|+|+|||+|..+..+.+                   +..+|+..|.-..=-...-+.++.. ..--+..+.+.+.. +
T Consensus        68 ~~vLDiGcG~G~~~~~l~~-------------------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~  127 (235)
T 3lcc_A           68 GRALVPGCGGGHDVVAMAS-------------------PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFT-W  127 (235)
T ss_dssp             EEEEEETCTTCHHHHHHCB-------------------TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTT-C
T ss_pred             CCEEEeCCCCCHHHHHHHh-------------------CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhc-C
Confidence            5999999999999876631                   1234555554322111111111111 01123344555555 3


Q ss_pred             cCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEe
Q 044174          110 FPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIM  189 (332)
Q Consensus       110 fP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~~  189 (332)
                      .|++++|+++++.++||+..                                    .|...+|+.-++-|+|||++++..
T Consensus       128 ~~~~~fD~v~~~~~l~~~~~------------------------------------~~~~~~l~~~~~~LkpgG~l~~~~  171 (235)
T 3lcc_A          128 RPTELFDLIFDYVFFCAIEP------------------------------------EMRPAWAKSMYELLKPDGELITLM  171 (235)
T ss_dssp             CCSSCEEEEEEESSTTTSCG------------------------------------GGHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCCeeEEEEChhhhcCCH------------------------------------HHHHHHHHHHHHHCCCCcEEEEEE
Confidence            47779999999999999742                                    123356677778899999999876


Q ss_pred             cccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEeC
Q 044174          190 PGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELTN  262 (332)
Q Consensus       190 ~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~  262 (332)
                      ......                                   ...|.|..+.+++++++++.| |++..++...
T Consensus       172 ~~~~~~-----------------------------------~~~~~~~~~~~~~~~~l~~~G-f~~~~~~~~~  208 (235)
T 3lcc_A          172 YPITDH-----------------------------------VGGPPYKVDVSTFEEVLVPIG-FKAVSVEENP  208 (235)
T ss_dssp             CCCSCC-----------------------------------CSCSSCCCCHHHHHHHHGGGT-EEEEEEEECT
T ss_pred             eccccc-----------------------------------CCCCCccCCHHHHHHHHHHcC-CeEEEEEecC
Confidence            543311                                   112445679999999999999 9999998775

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=98.82  E-value=8.8e-08  Score=86.16  Aligned_cols=151  Identities=15%  Similarity=0.047  Sum_probs=86.5

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccc--cceeeecCCcc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQR--EYYSAGVPGSF  105 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~--~~f~~~vpgSF  105 (332)
                      +...+|+|+|||+|..++.+....                  ..+|+--|+-. ++....+......  .--+..+.+++
T Consensus        35 ~~~~~VLDiGcG~G~~~~~la~~~------------------~~~v~gvD~s~-~~l~~a~~~~~~~~~~~~v~~~~~d~   95 (256)
T 1nkv_A           35 KPGTRILDLGSGSGEMLCTWARDH------------------GITGTGIDMSS-LFTAQAKRRAEELGVSERVHFIHNDA   95 (256)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHHT------------------CCEEEEEESCH-HHHHHHHHHHHHTTCTTTEEEEESCC
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhc------------------CCeEEEEeCCH-HHHHHHHHHHHhcCCCcceEEEECCh
Confidence            345799999999999988775431                  01223333211 1112221111000  01123344566


Q ss_pred             ccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeE
Q 044174          106 HHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMM  185 (332)
Q Consensus       106 y~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~m  185 (332)
                      ..-.+ ++++|+|+|..++|++...+                                      .+|+.-++-|+|||++
T Consensus        96 ~~~~~-~~~fD~V~~~~~~~~~~~~~--------------------------------------~~l~~~~r~LkpgG~l  136 (256)
T 1nkv_A           96 AGYVA-NEKCDVAACVGATWIAGGFA--------------------------------------GAEELLAQSLKPGGIM  136 (256)
T ss_dssp             TTCCC-SSCEEEEEEESCGGGTSSSH--------------------------------------HHHHHHTTSEEEEEEE
T ss_pred             HhCCc-CCCCCEEEECCChHhcCCHH--------------------------------------HHHHHHHHHcCCCeEE
Confidence            55444 78999999999999965422                                      2455555788999999


Q ss_pred             EEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEe
Q 044174          186 VIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELT  261 (332)
Q Consensus       186 vl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~  261 (332)
                      ++..+.......      .   ..+...        ..      . .....+++.+++.+++++.| |++..++..
T Consensus       137 ~~~~~~~~~~~~------~---~~~~~~--------~~------~-~~~~~~~~~~~~~~~l~~aG-f~~~~~~~~  187 (256)
T 1nkv_A          137 LIGEPYWRQLPA------T---EEIAQA--------CG------V-SSTSDFLTLPGLVGAFDDLG-YDVVEMVLA  187 (256)
T ss_dssp             EEEEEEETTCCS------S---HHHHHT--------TT------C-SCGGGSCCHHHHHHHHHTTT-BCCCEEEEC
T ss_pred             EEecCcccCCCC------h---HHHHHH--------Hh------c-ccccccCCHHHHHHHHHHCC-CeeEEEEeC
Confidence            998754332211      0   011111        10      0 11225689999999999999 987766543

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=98.82  E-value=2.9e-08  Score=90.56  Aligned_cols=164  Identities=13%  Similarity=0.158  Sum_probs=92.3

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCcccc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHH  107 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~  107 (332)
                      +...+|+|+|||+|..+..+.+.                 .|..+|+-.|.-.+-....-+.+.....--+..+.+....
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~-----------------~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~   98 (276)
T 3mgg_A           36 PPGAKVLEAGCGIGAQTVILAKN-----------------NPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFS   98 (276)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHH-----------------CTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGG
T ss_pred             CCCCeEEEecCCCCHHHHHHHHh-----------------CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEccccc
Confidence            45689999999999988776432                 1234455555422211111111111000012334455666


Q ss_pred             CCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEE
Q 044174          108 RLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVI  187 (332)
Q Consensus       108 ~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl  187 (332)
                      ..+|++++|+|+++.++||+...+                                      .+|+.-.+-|+|||++++
T Consensus        99 ~~~~~~~fD~v~~~~~l~~~~~~~--------------------------------------~~l~~~~~~L~pgG~l~~  140 (276)
T 3mgg_A           99 LPFEDSSFDHIFVCFVLEHLQSPE--------------------------------------EALKSLKKVLKPGGTITV  140 (276)
T ss_dssp             CCSCTTCEEEEEEESCGGGCSCHH--------------------------------------HHHHHHHHHEEEEEEEEE
T ss_pred             CCCCCCCeeEEEEechhhhcCCHH--------------------------------------HHHHHHHHHcCCCcEEEE
Confidence            678899999999999999975421                                      345555678899999999


Q ss_pred             EecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEeC
Q 044174          188 IMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELTN  262 (332)
Q Consensus       188 ~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~  262 (332)
                      .....+.......  .....+.. ..+..+...          .  .....+.+++..++++.| |++..++...
T Consensus       141 ~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~----------~--~~~~~~~~~l~~~l~~aG-f~~v~~~~~~  199 (276)
T 3mgg_A          141 IEGDHGSCYFHPE--GKKAIEAW-NCLIRVQAY----------M--KGNSLVGRQIYPLLQESG-FEKIRVEPRM  199 (276)
T ss_dssp             EEECGGGCEEESC--CHHHHHHH-HHHHHHHHH----------T--TCCTTGGGGHHHHHHHTT-CEEEEEEEEE
T ss_pred             EEcCCCCceECCC--cHHHHHHH-HHHHHHHHh----------c--CCCcchHHHHHHHHHHCC-CCeEEEeeEE
Confidence            8765433211000  11111111 111111110          0  011235578999999999 9998888654

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=98.81  E-value=4.9e-08  Score=89.32  Aligned_cols=86  Identities=13%  Similarity=0.022  Sum_probs=62.6

Q ss_pred             CCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEecc
Q 044174          112 QSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIMPG  191 (332)
Q Consensus       112 ~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~~~g  191 (332)
                      .+++|+|+|+.+|||+...+                                  .|+...|+.-++-|||||+|++....
T Consensus       154 ~~~fD~V~~~~~l~~i~~~~----------------------------------~~~~~~l~~i~r~LKPGG~li~~~~~  199 (263)
T 2a14_A          154 LPLADCVLTLLAMECACCSL----------------------------------DAYRAALCNLASLLKPGGHLVTTVTL  199 (263)
T ss_dssp             CCCEEEEEEESCHHHHCSSH----------------------------------HHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred             cCCCCEeeehHHHHHhcCCH----------------------------------HHHHHHHHHHHHHcCCCcEEEEEEee
Confidence            56999999999999975422                                  25566788888999999999998643


Q ss_pred             cCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEeC
Q 044174          192 IPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELTN  262 (332)
Q Consensus       192 r~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~  262 (332)
                      ..+       ...               .|        ....+.+..+.+|++..++++| |++..++...
T Consensus       200 ~~~-------~~~---------------~g--------~~~~~~~~~~~~~l~~~l~~aG-F~i~~~~~~~  239 (263)
T 2a14_A          200 RLP-------SYM---------------VG--------KREFSCVALEKGEVEQAVLDAG-FDIEQLLHSP  239 (263)
T ss_dssp             SCC-------EEE---------------ET--------TEEEECCCCCHHHHHHHHHHTT-EEEEEEEEEC
T ss_pred             cCc-------cce---------------eC--------CeEeeccccCHHHHHHHHHHCC-CEEEEEeecc
Confidence            211       000               11        0113445669999999999999 9999988764

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=98.80  E-value=3.5e-07  Score=83.75  Aligned_cols=165  Identities=13%  Similarity=0.109  Sum_probs=91.5

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhc-Ccccc-cceeeecCCcc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTS-LPQQR-EYYSAGVPGSF  105 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~-l~~~~-~~f~~~vpgSF  105 (332)
                      +...+|+|+|||+|..+..+...-                  ..+|+..|.-.. .-...+. +.... ..-+..+.+++
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~------------------~~~v~gvD~s~~-~~~~a~~~~~~~~~~~~v~~~~~d~  123 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERAG------------------IGEYYGVDIAEV-SINDARVRARNMKRRFKVFFRAQDS  123 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHT------------------CSEEEEEESCHH-HHHHHHHHHHTSCCSSEEEEEESCT
T ss_pred             CCCCeEEEECCCCCHHHHHHHHCC------------------CCEEEEEECCHH-HHHHHHHHHHhcCCCccEEEEECCc
Confidence            345799999999999987754310                  012333332211 1111111 11100 01122234444


Q ss_pred             ccCCc-CCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCe
Q 044174          106 HHRLF-PQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGM  184 (332)
Q Consensus       106 y~~lf-P~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~  184 (332)
                      ....+ +++++|+|+++.++||+-..                                  ..|...+|+.-++-|+|||+
T Consensus       124 ~~~~~~~~~~fD~v~~~~~l~~~~~~----------------------------------~~~~~~~l~~~~~~LkpgG~  169 (298)
T 1ri5_A          124 YGRHMDLGKEFDVISSQFSFHYAFST----------------------------------SESLDIAQRNIARHLRPGGY  169 (298)
T ss_dssp             TTSCCCCSSCEEEEEEESCGGGGGSS----------------------------------HHHHHHHHHHHHHTEEEEEE
T ss_pred             cccccCCCCCcCEEEECchhhhhcCC----------------------------------HHHHHHHHHHHHHhcCCCCE
Confidence            44445 68899999999999995211                                  12455678878889999999


Q ss_pred             EEEEecccCCCCCCCCcchhHHHHHHHHHHHHHH-Hhh----------ccch---hhh-----cc-cCcCcccCCHHHHH
Q 044174          185 MVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELA-NEQ----------LITE---AEL-----DS-FNLPIYSASSEEMV  244 (332)
Q Consensus       185 mvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv-~eG----------li~~---e~~-----d~-fn~P~y~ps~~E~~  244 (332)
                      +++.......           +...    +.... ...          .++.   .+.     +. -..|.++.+.+|++
T Consensus       170 l~~~~~~~~~-----------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~l~  234 (298)
T 1ri5_A          170 FIMTVPSRDV-----------ILER----YKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVNNCIEYFVDFTRMV  234 (298)
T ss_dssp             EEEEEECHHH-----------HHHH----HHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTSCSSEEEECCCHHHHH
T ss_pred             EEEEECCHHH-----------HHHH----HccCccCCeeEEEEeCccccccccccceEEEEEchhhcCCcccccCHHHHH
Confidence            9999865321           1111    11000 000          0000   000     00 02345778999999


Q ss_pred             HHHHhCCceEEeEEEEe
Q 044174          245 KLVDKNGHFSIKTVELT  261 (332)
Q Consensus       245 ~~ie~~G~F~I~~le~~  261 (332)
                      .++++.| |++...+.+
T Consensus       235 ~ll~~aG-f~~v~~~~~  250 (298)
T 1ri5_A          235 DGFKRLG-LSLVERKGF  250 (298)
T ss_dssp             HHHHTTT-EEEEEEEEH
T ss_pred             HHHHHcC-CEEEEecCH
Confidence            9999999 999888765

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=98.78  E-value=7e-08  Score=84.04  Aligned_cols=156  Identities=13%  Similarity=0.098  Sum_probs=86.9

Q ss_pred             eEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcC-cccc-cceeeecCCccccC
Q 044174           31 IRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSL-PQQR-EYYSAGVPGSFHHR  108 (332)
Q Consensus        31 ~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l-~~~~-~~f~~~vpgSFy~~  108 (332)
                      -+|+|+|||+|..+..+...                  +..+|+.-|.-.. .....+.. .... ..-+..+-+++...
T Consensus        45 ~~vLdiG~G~G~~~~~l~~~------------------~~~~v~~~D~s~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~  105 (219)
T 3dlc_A           45 GTCIDIGSGPGALSIALAKQ------------------SDFSIRALDFSKH-MNEIALKNIADANLNDRIQIVQGDVHNI  105 (219)
T ss_dssp             EEEEEETCTTSHHHHHHHHH------------------SEEEEEEEESCHH-HHHHHHHHHHHTTCTTTEEEEECBTTBC
T ss_pred             CEEEEECCCCCHHHHHHHHc------------------CCCeEEEEECCHH-HHHHHHHHHHhccccCceEEEEcCHHHC
Confidence            39999999999988776542                  1234444443211 11111111 1000 01123344555555


Q ss_pred             CcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEE
Q 044174          109 LFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVII  188 (332)
Q Consensus       109 lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~  188 (332)
                      .+|++++|+++++.++||+..                                      ...+|+.-.+-|+|||++++.
T Consensus       106 ~~~~~~~D~v~~~~~l~~~~~--------------------------------------~~~~l~~~~~~L~pgG~l~~~  147 (219)
T 3dlc_A          106 PIEDNYADLIVSRGSVFFWED--------------------------------------VATAFREIYRILKSGGKTYIG  147 (219)
T ss_dssp             SSCTTCEEEEEEESCGGGCSC--------------------------------------HHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCcccccEEEECchHhhccC--------------------------------------HHHHHHHHHHhCCCCCEEEEE
Confidence            688999999999999999722                                      123566666788999999997


Q ss_pred             ecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEE
Q 044174          189 MPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVEL  260 (332)
Q Consensus       189 ~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~  260 (332)
                      ..-..          ....+.+...+.... .+..     ..+.......+.+++++++++.| |++.++..
T Consensus       148 ~~~~~----------~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~l~~aG-f~~v~~~~  202 (219)
T 3dlc_A          148 GGFGN----------KELRDSISAEMIRKN-PDWK-----EFNRKNISQENVERFQNVLDEIG-ISSYEIIL  202 (219)
T ss_dssp             ECCSS----------HHHHHHHHHHHHHHC-TTHH-----HHHHHHSSHHHHHHHHHHHHHHT-CSSEEEEE
T ss_pred             eccCc----------HHHHHHHHHHHHHhH-HHHH-----hhhhhccccCCHHHHHHHHHHcC-CCeEEEEe
Confidence            53211          112233333332220 0000     00101122338899999999999 87766553

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=98.78  E-value=3.6e-07  Score=85.43  Aligned_cols=152  Identities=11%  Similarity=0.053  Sum_probs=90.1

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccc--cceeeecCCcc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQR--EYYSAGVPGSF  105 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~--~~f~~~vpgSF  105 (332)
                      ....+|+|+|||+|..++.+.+.. .                 .+|+--|+-. +.-...+......  .--+..+-+++
T Consensus       116 ~~~~~vLDiGcG~G~~~~~la~~~-~-----------------~~v~gvD~s~-~~~~~a~~~~~~~~~~~~v~~~~~d~  176 (312)
T 3vc1_A          116 GPDDTLVDAGCGRGGSMVMAHRRF-G-----------------SRVEGVTLSA-AQADFGNRRARELRIDDHVRSRVCNM  176 (312)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHH-C-----------------CEEEEEESCH-HHHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred             CCCCEEEEecCCCCHHHHHHHHHc-C-----------------CEEEEEeCCH-HHHHHHHHHHHHcCCCCceEEEECCh
Confidence            456799999999999998876531 0                 1122222211 1111111100000  00122344455


Q ss_pred             ccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeE
Q 044174          106 HHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMM  185 (332)
Q Consensus       106 y~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~m  185 (332)
                      ..-.+|++++|+|+|+.++||+.  +.                                     .+|+.-.+-|+|||++
T Consensus       177 ~~~~~~~~~fD~V~~~~~l~~~~--~~-------------------------------------~~l~~~~~~LkpgG~l  217 (312)
T 3vc1_A          177 LDTPFDKGAVTASWNNESTMYVD--LH-------------------------------------DLFSEHSRFLKVGGRY  217 (312)
T ss_dssp             TSCCCCTTCEEEEEEESCGGGSC--HH-------------------------------------HHHHHHHHHEEEEEEE
T ss_pred             hcCCCCCCCEeEEEECCchhhCC--HH-------------------------------------HHHHHHHHHcCCCcEE
Confidence            55557889999999999999973  21                                     3556666789999999


Q ss_pred             EEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEe
Q 044174          186 VIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELT  261 (332)
Q Consensus       186 vl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~  261 (332)
                      ++......+....    ....+..       + ....          .| .+++.+++++++++.| |++..++.+
T Consensus       218 ~~~~~~~~~~~~~----~~~~~~~-------~-~~~~----------~~-~~~s~~~~~~~l~~aG-f~~~~~~~~  269 (312)
T 3vc1_A          218 VTITGCWNPRYGQ----PSKWVSQ-------I-NAHF----------EC-NIHSRREYLRAMADNR-LVPHTIVDL  269 (312)
T ss_dssp             EEEEEEECTTTCS----CCHHHHH-------H-HHHH----------TC-CCCBHHHHHHHHHTTT-EEEEEEEEC
T ss_pred             EEEEccccccccc----hhHHHHH-------H-Hhhh----------cC-CCCCHHHHHHHHHHCC-CEEEEEEeC
Confidence            9987765542211    1111111       1 1111          12 4788999999999999 999888866

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=98.76  E-value=1e-07  Score=90.83  Aligned_cols=151  Identities=17%  Similarity=0.150  Sum_probs=97.1

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCccc--ccceeeecCCcc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQ--REYYSAGVPGSF  105 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~--~~~f~~~vpgSF  105 (332)
                      ++..+|+|+|||+|..+..+++.                 .|..+++.-|+|..    +-+.....  ..-.+.-+.|+|
T Consensus       183 ~~~~~vLDvG~G~G~~~~~l~~~-----------------~p~~~~~~~D~~~~----~~~~~~~~~~~~~~v~~~~~d~  241 (348)
T 3lst_A          183 PATGTVADVGGGRGGFLLTVLRE-----------------HPGLQGVLLDRAEV----VARHRLDAPDVAGRWKVVEGDF  241 (348)
T ss_dssp             CSSEEEEEETCTTSHHHHHHHHH-----------------CTTEEEEEEECHHH----HTTCCCCCGGGTTSEEEEECCT
T ss_pred             cCCceEEEECCccCHHHHHHHHH-----------------CCCCEEEEecCHHH----hhcccccccCCCCCeEEEecCC
Confidence            45689999999999988776442                 24577888888531    11211111  122356678899


Q ss_pred             ccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeE
Q 044174          106 HHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMM  185 (332)
Q Consensus       106 y~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~m  185 (332)
                      + ..+|  ++|+++++.++|..+.                                    .+...+|+.-++-|+|||++
T Consensus       242 ~-~~~p--~~D~v~~~~vlh~~~d------------------------------------~~~~~~L~~~~~~LkpgG~l  282 (348)
T 3lst_A          242 L-REVP--HADVHVLKRILHNWGD------------------------------------EDSVRILTNCRRVMPAHGRV  282 (348)
T ss_dssp             T-TCCC--CCSEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHTCCTTCEE
T ss_pred             C-CCCC--CCcEEEEehhccCCCH------------------------------------HHHHHHHHHHHHhcCCCCEE
Confidence            8 5677  9999999999996432                                    13345777788899999999


Q ss_pred             EEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEE
Q 044174          186 VIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVEL  260 (332)
Q Consensus       186 vl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~  260 (332)
                      ++.-.-.++....   ...        .+.++..-..          ..-..+|.+|+++++++.| |++.++..
T Consensus       283 ~i~e~~~~~~~~~---~~~--------~~~d~~~~~~----------~~~~~~t~~e~~~ll~~aG-f~~~~~~~  335 (348)
T 3lst_A          283 LVIDAVVPEGNDA---HQS--------KEMDFMMLAA----------RTGQERTAAELEPLFTAAG-LRLDRVVG  335 (348)
T ss_dssp             EEEECCBCSSSSC---CHH--------HHHHHHHHHT----------TSCCCCBHHHHHHHHHHTT-EEEEEEEE
T ss_pred             EEEEeccCCCCCc---chh--------hhcChhhhhc----------CCCcCCCHHHHHHHHHHCC-CceEEEEE
Confidence            9876544332110   111        1111111000          1224578999999999999 99888765

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=98.76  E-value=1.1e-08  Score=89.44  Aligned_cols=156  Identities=12%  Similarity=0.027  Sum_probs=89.4

Q ss_pred             ceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCccccCC
Q 044174           30 IIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHRL  109 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~~l  109 (332)
                      ..+|+|+|||+|..+..+...            +       .+|+.-|.-. +.-...+.. ...+  +..+.+++..- 
T Consensus        47 ~~~vLdiG~G~G~~~~~l~~~------------~-------~~v~~~D~s~-~~~~~a~~~-~~~~--~~~~~~d~~~~-  102 (218)
T 3ou2_A           47 RGDVLELASGTGYWTRHLSGL------------A-------DRVTALDGSA-EMIAEAGRH-GLDN--VEFRQQDLFDW-  102 (218)
T ss_dssp             CSEEEEESCTTSHHHHHHHHH------------S-------SEEEEEESCH-HHHHHHGGG-CCTT--EEEEECCTTSC-
T ss_pred             CCeEEEECCCCCHHHHHHHhc------------C-------CeEEEEeCCH-HHHHHHHhc-CCCC--eEEEecccccC-
Confidence            459999999999988877543            0       1233333211 111112220 0011  23344555544 


Q ss_pred             cCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEe
Q 044174          110 FPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIM  189 (332)
Q Consensus       110 fP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~~  189 (332)
                      +|++++|+++++.++||+..                                    .++..+|+.-.+-|+|||++++..
T Consensus       103 ~~~~~~D~v~~~~~l~~~~~------------------------------------~~~~~~l~~~~~~L~pgG~l~~~~  146 (218)
T 3ou2_A          103 TPDRQWDAVFFAHWLAHVPD------------------------------------DRFEAFWESVRSAVAPGGVVEFVD  146 (218)
T ss_dssp             CCSSCEEEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCceeEEEEechhhcCCH------------------------------------HHHHHHHHHHHHHcCCCeEEEEEe
Confidence            89999999999999999643                                    123456777778899999999998


Q ss_pred             cccCCCCCCCCcchhHHHHHHHHHHHHHHHhh---ccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEe
Q 044174          190 PGIPYGMPYSHLTNGVMYDLMATIFMELANEQ---LITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELT  261 (332)
Q Consensus       190 ~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eG---li~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~  261 (332)
                      .++....             +...+.......   .+.  .-..+.....+++.+|+++++++.| |+|+..+..
T Consensus       147 ~~~~~~~-------------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~aG-f~v~~~~~~  205 (218)
T 3ou2_A          147 VTDHERR-------------LEQQDDSEPEVAVRRTLQ--DGRSFRIVKVFRSPAELTERLTALG-WSCSVDEVH  205 (218)
T ss_dssp             ECCCC-------------------------CEEEEECT--TSCEEEEECCCCCHHHHHHHHHHTT-EEEEEEEEE
T ss_pred             CCCCccc-------------cchhhhcccccceeeecC--CcchhhHhhcCCCHHHHHHHHHHCC-CEEEeeecc
Confidence            8763211             111111100000   010  0001111233689999999999999 998877754

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=98.75  E-value=1.5e-07  Score=83.75  Aligned_cols=148  Identities=15%  Similarity=0.118  Sum_probs=92.1

Q ss_pred             CceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCccccC
Q 044174           29 NIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHR  108 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~~  108 (332)
                      ...+|+|+|||+|..+..+.+.            +       .+|+..|.-. +.-...+.....  .-+..+-+.+...
T Consensus        53 ~~~~vLDiG~G~G~~~~~l~~~------------~-------~~v~~vD~s~-~~~~~a~~~~~~--~~~~~~~~d~~~~  110 (242)
T 3l8d_A           53 KEAEVLDVGCGDGYGTYKLSRT------------G-------YKAVGVDISE-VMIQKGKERGEG--PDLSFIKGDLSSL  110 (242)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT------------T-------CEEEEEESCH-HHHHHHHTTTCB--TTEEEEECBTTBC
T ss_pred             CCCeEEEEcCCCCHHHHHHHHc------------C-------CeEEEEECCH-HHHHHHHhhccc--CCceEEEcchhcC
Confidence            4579999999999988776542            0       1344444321 222222222111  1123344555566


Q ss_pred             CcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEE
Q 044174          109 LFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVII  188 (332)
Q Consensus       109 lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~  188 (332)
                      .+|++++|+++++.++||+...                                      ..+|+.-++-|+|||++++.
T Consensus       111 ~~~~~~fD~v~~~~~l~~~~~~--------------------------------------~~~l~~~~~~L~pgG~l~i~  152 (242)
T 3l8d_A          111 PFENEQFEAIMAINSLEWTEEP--------------------------------------LRALNEIKRVLKSDGYACIA  152 (242)
T ss_dssp             SSCTTCEEEEEEESCTTSSSCH--------------------------------------HHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCCCCccEEEEcChHhhccCH--------------------------------------HHHHHHHHHHhCCCeEEEEE
Confidence            6889999999999999996321                                      13566666788999999999


Q ss_pred             ecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEe
Q 044174          189 MPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELT  261 (332)
Q Consensus       189 ~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~  261 (332)
                      ..+......      .       ..+.           ............+.++++.++++.| |++...+.+
T Consensus       153 ~~~~~~~~~------~-------~~~~-----------~~~~~~~~~~~~~~~~~~~~l~~~G-f~~~~~~~~  200 (242)
T 3l8d_A          153 ILGPTAKPR------E-------NSYP-----------RLYGKDVVCNTMMPWEFEQLVKEQG-FKVVDGIGV  200 (242)
T ss_dssp             EECTTCGGG------G-------GGGG-----------GGGTCCCSSCCCCHHHHHHHHHHTT-EEEEEEEEE
T ss_pred             EcCCcchhh------h-------hhhh-----------hhccccccccCCCHHHHHHHHHHcC-CEEEEeecc
Confidence            876543110      0       0000           1111223556678999999999999 999888844

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=98.74  E-value=1.2e-07  Score=83.01  Aligned_cols=142  Identities=13%  Similarity=0.113  Sum_probs=91.1

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCcccc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHH  107 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~  107 (332)
                      +...+|+|+|||+|..+..+.+.            +       .+|+.-|.-. +.....+...     -+..+-+++..
T Consensus        42 ~~~~~vLDiGcG~G~~~~~l~~~------------~-------~~v~~vD~s~-~~~~~a~~~~-----~~~~~~~d~~~   96 (211)
T 3e23_A           42 PAGAKILELGCGAGYQAEAMLAA------------G-------FDVDATDGSP-ELAAEASRRL-----GRPVRTMLFHQ   96 (211)
T ss_dssp             CTTCEEEESSCTTSHHHHHHHHT------------T-------CEEEEEESCH-HHHHHHHHHH-----TSCCEECCGGG
T ss_pred             CCCCcEEEECCCCCHHHHHHHHc------------C-------CeEEEECCCH-HHHHHHHHhc-----CCceEEeeecc
Confidence            34579999999999998777542            0       2344444321 1111111111     11123345554


Q ss_pred             CCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEE
Q 044174          108 RLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVI  187 (332)
Q Consensus       108 ~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl  187 (332)
                      .. +++++|+++++.++|++..                                    .|+..+|+.-++-|+|||++++
T Consensus        97 ~~-~~~~fD~v~~~~~l~~~~~------------------------------------~~~~~~l~~~~~~LkpgG~l~~  139 (211)
T 3e23_A           97 LD-AIDAYDAVWAHACLLHVPR------------------------------------DELADVLKLIWRALKPGGLFYA  139 (211)
T ss_dssp             CC-CCSCEEEEEECSCGGGSCH------------------------------------HHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CC-CCCcEEEEEecCchhhcCH------------------------------------HHHHHHHHHHHHhcCCCcEEEE
Confidence            44 8899999999999999642                                    2445677777788999999999


Q ss_pred             EecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEeC
Q 044174          188 IMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELTN  262 (332)
Q Consensus       188 ~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~  262 (332)
                      .+.......                               .+.+...+.+.+.+++++++++.|.|++..++...
T Consensus       140 ~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~~~~  183 (211)
T 3e23_A          140 SYKSGEGEG-------------------------------RDKLARYYNYPSEEWLRARYAEAGTWASVAVESSE  183 (211)
T ss_dssp             EEECCSSCE-------------------------------ECTTSCEECCCCHHHHHHHHHHHCCCSEEEEEEEE
T ss_pred             EEcCCCccc-------------------------------ccccchhccCCCHHHHHHHHHhCCCcEEEEEEecc
Confidence            975433211                               01222345678999999999999977887777543

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=98.74  E-value=4.2e-07  Score=87.50  Aligned_cols=154  Identities=13%  Similarity=0.118  Sum_probs=96.5

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCcccc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHH  107 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~  107 (332)
                      ++..+|+|+|||+|..+..+++.                 .|..++..-|+|.     .........  -+.-+.|+|++
T Consensus       202 ~~~~~vlDvG~G~G~~~~~l~~~-----------------~p~~~~~~~D~~~-----~~~~a~~~~--~v~~~~~d~~~  257 (368)
T 3reo_A          202 EGLTTIVDVGGGTGAVASMIVAK-----------------YPSINAINFDLPH-----VIQDAPAFS--GVEHLGGDMFD  257 (368)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHH-----------------CTTCEEEEEECHH-----HHTTCCCCT--TEEEEECCTTT
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHh-----------------CCCCEEEEEehHH-----HHHhhhhcC--CCEEEecCCCC
Confidence            44689999999999988776442                 2456778888742     222221111  24567899987


Q ss_pred             CCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEE
Q 044174          108 RLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVI  187 (332)
Q Consensus       108 ~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl  187 (332)
                       .+|++  |+++++++||+++.                                    .+...+|+.=++-|+|||++++
T Consensus       258 -~~p~~--D~v~~~~vlh~~~~------------------------------------~~~~~~l~~~~~~L~pgG~l~i  298 (368)
T 3reo_A          258 -GVPKG--DAIFIKWICHDWSD------------------------------------EHCLKLLKNCYAALPDHGKVIV  298 (368)
T ss_dssp             -CCCCC--SEEEEESCGGGBCH------------------------------------HHHHHHHHHHHHHSCTTCEEEE
T ss_pred             -CCCCC--CEEEEechhhcCCH------------------------------------HHHHHHHHHHHHHcCCCCEEEE
Confidence             68876  99999999995432                                    1334577777789999999998


Q ss_pred             EecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEe
Q 044174          188 IMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELT  261 (332)
Q Consensus       188 ~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~  261 (332)
                      .-.-.++....     ...  .-...+.++..-..         ...-..++.+|+++++++.| |++.++...
T Consensus       299 ~e~~~~~~~~~-----~~~--~~~~~~~d~~~~~~---------~~~g~~rt~~e~~~ll~~AG-F~~v~~~~~  355 (368)
T 3reo_A          299 AEYILPPSPDP-----SIA--TKVVIHTDALMLAY---------NPGGKERTEKEFQALAMASG-FRGFKVASC  355 (368)
T ss_dssp             EECCCCSSCCC-----CHH--HHHHHHHHHHHHHH---------SSBCCCCCHHHHHHHHHHTT-CCEEEEEEE
T ss_pred             EEeccCCCCCC-----chh--hhHHHhhhHHHHhh---------cCCCccCCHHHHHHHHHHCC-CeeeEEEEe
Confidence            75544332110     000  00111222211110         01224578999999999999 998777644

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=98.74  E-value=9.2e-08  Score=84.00  Aligned_cols=146  Identities=14%  Similarity=0.050  Sum_probs=92.0

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhc-CcccccceeeecCCccc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTS-LPQQREYYSAGVPGSFH  106 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~-l~~~~~~f~~~vpgSFy  106 (332)
                      ....+|+|+|||+|..+..+....                .|..+|+.-|.-.. .....+. +....---+..+.+++.
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~----------------~~~~~v~~vD~s~~-~~~~a~~~~~~~~~~~~~~~~~d~~   98 (219)
T 3dh0_A           36 KEGMTVLDVGTGAGFYLPYLSKMV----------------GEKGKVYAIDVQEE-MVNYAWEKVNKLGLKNVEVLKSEEN   98 (219)
T ss_dssp             CTTCEEEESSCTTCTTHHHHHHHH----------------TTTCEEEEEESCHH-HHHHHHHHHHHHTCTTEEEEECBTT
T ss_pred             CCCCEEEEEecCCCHHHHHHHHHh----------------CCCcEEEEEECCHH-HHHHHHHHHHHcCCCcEEEEecccc
Confidence            345799999999999998775431                12345555554221 1111111 11100001333445556


Q ss_pred             cCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEE
Q 044174          107 HRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMV  186 (332)
Q Consensus       107 ~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mv  186 (332)
                      ...+|++++|+++++.++||+..                                      ...+|+.-.+-|+|||+++
T Consensus        99 ~~~~~~~~fD~v~~~~~l~~~~~--------------------------------------~~~~l~~~~~~LkpgG~l~  140 (219)
T 3dh0_A           99 KIPLPDNTVDFIFMAFTFHELSE--------------------------------------PLKFLEELKRVAKPFAYLA  140 (219)
T ss_dssp             BCSSCSSCEEEEEEESCGGGCSS--------------------------------------HHHHHHHHHHHEEEEEEEE
T ss_pred             cCCCCCCCeeEEEeehhhhhcCC--------------------------------------HHHHHHHHHHHhCCCeEEE
Confidence            66688999999999999999743                                      1235566667889999999


Q ss_pred             EEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEeC
Q 044174          187 IIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELTN  262 (332)
Q Consensus       187 l~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~  262 (332)
                      +...........                                 .....+.+.++++..+++.| |++.+.+.+.
T Consensus       141 i~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~l~~~G-f~~~~~~~~~  182 (219)
T 3dh0_A          141 IIDWKKEERDKG---------------------------------PPPEEVYSEWEVGLILEDAG-IRVGRVVEVG  182 (219)
T ss_dssp             EEEECSSCCSSS---------------------------------CCGGGSCCHHHHHHHHHHTT-CEEEEEEEET
T ss_pred             EEEecccccccC---------------------------------CchhcccCHHHHHHHHHHCC-CEEEEEEeeC
Confidence            987654432100                                 01123458999999999999 9988877664

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=98.72  E-value=5.8e-07  Score=86.46  Aligned_cols=154  Identities=16%  Similarity=0.160  Sum_probs=97.2

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCcccc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHH  107 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~  107 (332)
                      .+..+|+|+|||+|..+..+++.                 .|..++..-|+|.     ........  --+.-+.|+|+.
T Consensus       200 ~~~~~vlDvG~G~G~~~~~l~~~-----------------~p~~~~~~~D~~~-----~~~~a~~~--~~v~~~~~D~~~  255 (364)
T 3p9c_A          200 EGLGTLVDVGGGVGATVAAIAAH-----------------YPTIKGVNFDLPH-----VISEAPQF--PGVTHVGGDMFK  255 (364)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHH-----------------CTTCEEEEEECHH-----HHTTCCCC--TTEEEEECCTTT
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHH-----------------CCCCeEEEecCHH-----HHHhhhhc--CCeEEEeCCcCC
Confidence            44689999999999988776442                 2456778888852     22222211  235668899998


Q ss_pred             CCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEE
Q 044174          108 RLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVI  187 (332)
Q Consensus       108 ~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl  187 (332)
                       .+|.+  |+++++++||..+.                                    .+...+|+.-++-|+|||++++
T Consensus       256 -~~p~~--D~v~~~~vlh~~~d------------------------------------~~~~~~L~~~~~~L~pgG~l~i  296 (364)
T 3p9c_A          256 -EVPSG--DTILMKWILHDWSD------------------------------------QHCATLLKNCYDALPAHGKVVL  296 (364)
T ss_dssp             -CCCCC--SEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHHSCTTCEEEE
T ss_pred             -CCCCC--CEEEehHHhccCCH------------------------------------HHHHHHHHHHHHHcCCCCEEEE
Confidence             78876  99999999985322                                    2344577777889999999998


Q ss_pred             EecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEe
Q 044174          188 IMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELT  261 (332)
Q Consensus       188 ~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~  261 (332)
                      .-.-.++...     ......  ...+.++.--..         ...-..+|.+|+++++++.| |++.++...
T Consensus       297 ~e~~~~~~~~-----~~~~~~--~~~~~d~~m~~~---------~~~g~~rt~~e~~~ll~~AG-F~~v~~~~~  353 (364)
T 3p9c_A          297 VQCILPVNPE-----ANPSSQ--GVFHVDMIMLAH---------NPGGRERYEREFQALARGAG-FTGVKSTYI  353 (364)
T ss_dssp             EECCBCSSCC-----SSHHHH--HHHHHHHHHHHH---------CSSCCCCBHHHHHHHHHHTT-CCEEEEEEE
T ss_pred             EEeccCCCCC-----cchhhh--hHHHhHHHHHhc---------ccCCccCCHHHHHHHHHHCC-CceEEEEEc
Confidence            7554433211     011111  111222211000         11223468999999999999 998877644

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=98.71  E-value=1.2e-07  Score=87.40  Aligned_cols=88  Identities=13%  Similarity=0.110  Sum_probs=63.8

Q ss_pred             cCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEe
Q 044174          110 FPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIM  189 (332)
Q Consensus       110 fP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~~  189 (332)
                      +|++++|+|+|+.+|||+....                                  .|+..+|+.-++-|||||+|++..
T Consensus       170 ~~~~~fD~V~~~~~l~~~~~~~----------------------------------~~~~~~l~~~~r~LkpGG~l~~~~  215 (289)
T 2g72_A          170 PAPLPADALVSAFCLEAVSPDL----------------------------------ASFQRALDHITTLLRPGGHLLLIG  215 (289)
T ss_dssp             SSCSSEEEEEEESCHHHHCSSH----------------------------------HHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             cCCCCCCEEEehhhhhhhcCCH----------------------------------HHHHHHHHHHHHhcCCCCEEEEEE
Confidence            6778899999999999976421                                  245567788888999999999974


Q ss_pred             cccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEeC
Q 044174          190 PGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELTN  262 (332)
Q Consensus       190 ~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~  262 (332)
                      .-..+       ...               .|        .-..+.++.+.+|+++++++.| |++..++.+.
T Consensus       216 ~~~~~-------~~~---------------~~--------~~~~~~~~~~~~~l~~~l~~aG-f~~~~~~~~~  257 (289)
T 2g72_A          216 ALEES-------WYL---------------AG--------EARLTVVPVSEEEVREALVRSG-YKVRDLRTYI  257 (289)
T ss_dssp             EESCC-------EEE---------------ET--------TEEEECCCCCHHHHHHHHHHTT-EEEEEEEEEE
T ss_pred             ecCcc-------eEE---------------cC--------CeeeeeccCCHHHHHHHHHHcC-CeEEEeeEee
Confidence            22110       000               00        1123567789999999999999 9999988665

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=98.71  E-value=5.1e-08  Score=89.80  Aligned_cols=103  Identities=15%  Similarity=0.209  Sum_probs=65.2

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCcccc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHH  107 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~  107 (332)
                      +..-+|+|+|||+|..|..+.+.            +       -+|+-.|.-.   . ..+...+..+  +..+-+++.+
T Consensus        38 ~~~~~vLDvGcGtG~~~~~l~~~------------~-------~~v~gvD~s~---~-ml~~a~~~~~--v~~~~~~~e~   92 (257)
T 4hg2_A           38 PARGDALDCGCGSGQASLGLAEF------------F-------ERVHAVDPGE---A-QIRQALRHPR--VTYAVAPAED   92 (257)
T ss_dssp             SCSSEEEEESCTTTTTHHHHHTT------------C-------SEEEEEESCH---H-HHHTCCCCTT--EEEEECCTTC
T ss_pred             CCCCCEEEEcCCCCHHHHHHHHh------------C-------CEEEEEeCcH---H-hhhhhhhcCC--ceeehhhhhh
Confidence            33468999999999998776431            0       1233334311   1 1111111111  2334566677


Q ss_pred             CCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEE
Q 044174          108 RLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVI  187 (332)
Q Consensus       108 ~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl  187 (332)
                      -.+|++|+|+|+|+.++||+.  |                                     ..+|+.-++-|||||+|++
T Consensus        93 ~~~~~~sfD~v~~~~~~h~~~--~-------------------------------------~~~~~e~~rvLkpgG~l~~  133 (257)
T 4hg2_A           93 TGLPPASVDVAIAAQAMHWFD--L-------------------------------------DRFWAELRRVARPGAVFAA  133 (257)
T ss_dssp             CCCCSSCEEEEEECSCCTTCC--H-------------------------------------HHHHHHHHHHEEEEEEEEE
T ss_pred             hcccCCcccEEEEeeehhHhh--H-------------------------------------HHHHHHHHHHcCCCCEEEE
Confidence            779999999999999999963  1                                     1244555567899999999


Q ss_pred             EecccCC
Q 044174          188 IMPGIPY  194 (332)
Q Consensus       188 ~~~gr~~  194 (332)
                      ...+...
T Consensus       134 ~~~~~~~  140 (257)
T 4hg2_A          134 VTYGLTR  140 (257)
T ss_dssp             EEECCCB
T ss_pred             EECCCCC
Confidence            8877654

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=98.70  E-value=2.2e-07  Score=81.43  Aligned_cols=153  Identities=15%  Similarity=0.154  Sum_probs=89.5

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCcccc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHH  107 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~  107 (332)
                      ....+|+|+|||+|..+..+.+.                  + .+++..|.-..- -...+...      ...+.+++..
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~------------------~-~~~~~~D~~~~~-~~~~~~~~------~~~~~~d~~~   84 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKEN------------------G-TRVSGIEAFPEA-AEQAKEKL------DHVVLGDIET   84 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTT------------------T-CEEEEEESSHHH-HHHHHTTS------SEEEESCTTT
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhc------------------C-CeEEEEeCCHHH-HHHHHHhC------CcEEEcchhh
Confidence            34579999999999988766431                  1 234444432211 11111110      1123334433


Q ss_pred             --CCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeE
Q 044174          108 --RLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMM  185 (332)
Q Consensus       108 --~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~m  185 (332)
                        ..+|++++|+++++.++|++...                                      ..+|+.-.+-|+|||++
T Consensus        85 ~~~~~~~~~fD~v~~~~~l~~~~~~--------------------------------------~~~l~~~~~~L~~gG~l  126 (230)
T 3cc8_A           85 MDMPYEEEQFDCVIFGDVLEHLFDP--------------------------------------WAVIEKVKPYIKQNGVI  126 (230)
T ss_dssp             CCCCSCTTCEEEEEEESCGGGSSCH--------------------------------------HHHHHHTGGGEEEEEEE
T ss_pred             cCCCCCCCccCEEEECChhhhcCCH--------------------------------------HHHHHHHHHHcCCCCEE
Confidence              45778999999999999997531                                      13556666889999999


Q ss_pred             EEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhc-ccCcCcccCCHHHHHHHHHhCCceEEeEEEEeC
Q 044174          186 VIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELD-SFNLPIYSASSEEMVKLVDKNGHFSIKTVELTN  262 (332)
Q Consensus       186 vl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d-~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~  262 (332)
                      ++.......            +..+..    +....... .... .-.....+.+.+|+++++++.| |++..++.+.
T Consensus       127 ~~~~~~~~~------------~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~G-f~~~~~~~~~  186 (230)
T 3cc8_A          127 LASIPNVSH------------ISVLAP----LLAGNWTY-TEYGLLDKTHIRFFTFNEMLRMFLKAG-YSISKVDRVY  186 (230)
T ss_dssp             EEEEECTTS------------HHHHHH----HHTTCCCC-BSSSTTBTTCCCCCCHHHHHHHHHHTT-EEEEEEEEEE
T ss_pred             EEEeCCcch------------HHHHHH----HhcCCcee-ccCCCCCcceEEEecHHHHHHHHHHcC-CeEEEEEecc
Confidence            998865432            111111    11111110 0000 0012235679999999999999 9999988775

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=98.70  E-value=1.3e-07  Score=83.91  Aligned_cols=152  Identities=10%  Similarity=0.065  Sum_probs=87.6

Q ss_pred             ceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhc-CcccccceeeecCCccccC
Q 044174           30 IIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTS-LPQQREYYSAGVPGSFHHR  108 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~-l~~~~~~f~~~vpgSFy~~  108 (332)
                      ..+|+|+|||+|..+..+.+.            +     +  +|+-.|+-.. .-...+. .+.    -+..+-+++..-
T Consensus        43 ~~~vLDiGcG~G~~~~~l~~~------------~-----~--~v~gvD~s~~-~~~~a~~~~~~----~v~~~~~d~~~~   98 (250)
T 2p7i_A           43 PGNLLELGSFKGDFTSRLQEH------------F-----N--DITCVEASEE-AISHAQGRLKD----GITYIHSRFEDA   98 (250)
T ss_dssp             SSCEEEESCTTSHHHHHHTTT------------C-----S--CEEEEESCHH-HHHHHHHHSCS----CEEEEESCGGGC
T ss_pred             CCcEEEECCCCCHHHHHHHHh------------C-----C--cEEEEeCCHH-HHHHHHHhhhC----CeEEEEccHHHc
Confidence            458999999999988765321            1     1  2344443211 1111111 111    122334444443


Q ss_pred             CcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHH-HhhccCCeEEE
Q 044174          109 LFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARA-EEIVSGGMMVI  187 (332)
Q Consensus       109 lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra-~EL~pGG~mvl  187 (332)
                       +|++++|+|+|+.++|++...                                      ..+|+.-+ +-|+|||++++
T Consensus        99 -~~~~~fD~v~~~~~l~~~~~~--------------------------------------~~~l~~~~~~~LkpgG~l~i  139 (250)
T 2p7i_A           99 -QLPRRYDNIVLTHVLEHIDDP--------------------------------------VALLKRINDDWLAEGGRLFL  139 (250)
T ss_dssp             -CCSSCEEEEEEESCGGGCSSH--------------------------------------HHHHHHHHHTTEEEEEEEEE
T ss_pred             -CcCCcccEEEEhhHHHhhcCH--------------------------------------HHHHHHHHHHhcCCCCEEEE
Confidence             688999999999999997431                                      23566666 78899999999


Q ss_pred             EecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhh----hcccCcCcccCCHHHHHHHHHhCCceEEeEEEEeC
Q 044174          188 IMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAE----LDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELTN  262 (332)
Q Consensus       188 ~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~----~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~  262 (332)
                      ..+....           ...... .+     .|......    .+....-..+.+.+++++++++.| |++.+.+.+.
T Consensus       140 ~~~~~~~-----------~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G-f~~~~~~~~~  200 (250)
T 2p7i_A          140 VCPNANA-----------VSRQIA-VK-----MGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAG-LQVTYRSGIF  200 (250)
T ss_dssp             EEECTTC-----------HHHHHH-HH-----TTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTT-CEEEEEEEEE
T ss_pred             EcCChHH-----------HHHHHH-HH-----cCccccchhcccccccccccccCCHHHHHHHHHHCC-CeEEEEeeeE
Confidence            9865432           111111 11     12221110    000111123568999999999999 9999888543

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=98.69  E-value=9.4e-08  Score=85.67  Aligned_cols=147  Identities=14%  Similarity=0.107  Sum_probs=90.0

Q ss_pred             CceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHh-cCcccccceeeecCCcccc
Q 044174           29 NIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFT-SLPQQREYYSAGVPGSFHH  107 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~-~l~~~~~~f~~~vpgSFy~  107 (332)
                      ...+|+|+|||+|..+..+++..                  ..+|+..|.-..- -...+ .+......-+..+-+++..
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~------------------~~~v~~vD~s~~~-~~~a~~~~~~~~~~~~~~~~~d~~~  139 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPL------------------FREVDMVDITEDF-LVQAKTYLGEEGKRVRNYFCCGLQD  139 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT------------------CSEEEEEESCHHH-HHHHHHHTGGGGGGEEEEEECCGGG
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc------------------CCEEEEEeCCHHH-HHHHHHHhhhcCCceEEEEEcChhh
Confidence            46799999999999887764311                  1133333332111 11111 1111101112233445555


Q ss_pred             CCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEE
Q 044174          108 RLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVI  187 (332)
Q Consensus       108 ~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl  187 (332)
                      -.++++++|+++++.++|++..                                    .++..+|+.-.+-|+|||++++
T Consensus       140 ~~~~~~~fD~v~~~~~l~~~~~------------------------------------~~~~~~l~~~~~~LkpgG~l~i  183 (241)
T 2ex4_A          140 FTPEPDSYDVIWIQWVIGHLTD------------------------------------QHLAEFLRRCKGSLRPNGIIVI  183 (241)
T ss_dssp             CCCCSSCEEEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cCCCCCCEEEEEEcchhhhCCH------------------------------------HHHHHHHHHHHHhcCCCeEEEE
Confidence            5677889999999999998643                                    1234566767788999999999


Q ss_pred             EecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEeC
Q 044174          188 IMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELTN  262 (332)
Q Consensus       188 ~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~  262 (332)
                      ......+..                         ..     +. ....+.++.+++++++++.| |++...+...
T Consensus       184 ~~~~~~~~~-------------------------~~-----~~-~~~~~~~~~~~~~~~l~~aG-f~~~~~~~~~  226 (241)
T 2ex4_A          184 KDNMAQEGV-------------------------IL-----DD-VDSSVCRDLDVVRRIICSAG-LSLLAEERQE  226 (241)
T ss_dssp             EEEEBSSSE-------------------------EE-----ET-TTTEEEEBHHHHHHHHHHTT-CCEEEEEECC
T ss_pred             EEccCCCcc-------------------------ee-----cc-cCCcccCCHHHHHHHHHHcC-CeEEEeeecC
Confidence            765433200                         00     00 12345669999999999999 9998888664

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=98.68  E-value=7.5e-07  Score=82.53  Aligned_cols=152  Identities=15%  Similarity=0.181  Sum_probs=81.7

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCccc---ccceeeecCCc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQ---REYYSAGVPGS  104 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~---~~~f~~~vpgS  104 (332)
                      ....+|+|+|||+|..+..+++..                .+..+|+..|+-. .+-...+.....   ...-+.-+.++
T Consensus        35 ~~~~~vLDiGcG~G~~~~~la~~~----------------~~~~~v~gvD~s~-~~~~~a~~~~~~~~~~~~~v~~~~~d   97 (299)
T 3g5t_A           35 GERKLLVDVGCGPGTATLQMAQEL----------------KPFEQIIGSDLSA-TMIKTAEVIKEGSPDTYKNVSFKISS   97 (299)
T ss_dssp             SCCSEEEEETCTTTHHHHHHHHHS----------------SCCSEEEEEESCH-HHHHHHHHHHHHCC-CCTTEEEEECC
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhC----------------CCCCEEEEEeCCH-HHHHHHHHHHHhccCCCCceEEEEcC
Confidence            346899999999999998886421                0112333333311 111111111000   00011112233


Q ss_pred             cccCCcCC------CceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044174          105 FHHRLFPQ------SSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEE  178 (332)
Q Consensus       105 Fy~~lfP~------~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~E  178 (332)
                      +.+-.++.      +++|+|+|+.++||+ . |                                     ..+|+.-.+-
T Consensus        98 ~~~~~~~~~~~~~~~~fD~V~~~~~l~~~-~-~-------------------------------------~~~l~~~~~~  138 (299)
T 3g5t_A           98 SDDFKFLGADSVDKQKIDMITAVECAHWF-D-F-------------------------------------EKFQRSAYAN  138 (299)
T ss_dssp             TTCCGGGCTTTTTSSCEEEEEEESCGGGS-C-H-------------------------------------HHHHHHHHHH
T ss_pred             HHhCCccccccccCCCeeEEeHhhHHHHh-C-H-------------------------------------HHHHHHHHHh
Confidence            33333444      899999999999997 2 2                                     1355566678


Q ss_pred             hccCCeEEEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCccc-CCHHHHHHHHHhCCce
Q 044174          179 IVSGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYS-ASSEEMVKLVDKNGHF  253 (332)
Q Consensus       179 L~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~-ps~~E~~~~ie~~G~F  253 (332)
                      |+|||++++...+.+.....     .    .+...+.++...        +....|++. |..+.++..+++.| |
T Consensus       139 LkpgG~l~i~~~~~~~~~~~-----~----~~~~~~~~~~~~--------~~~~~~~w~~p~~~~~~~~l~~~g-f  196 (299)
T 3g5t_A          139 LRKDGTIAIWGYADPIFPDY-----P----EFDDLMIEVPYG--------KQGLGPYWEQPGRSRLRNMLKDSH-L  196 (299)
T ss_dssp             EEEEEEEEEEEEEEEECTTC-----G----GGTTHHHHHHHC--------TTTTGGGSCTTHHHHHHTTTTTCC-C
T ss_pred             cCCCcEEEEEecCCccccCc-----H----HHHHHHHHhccC--------cccccchhhchhhHHHHHhhhccC-C
Confidence            99999999865553321110     0    112233322111        002235444 88999999999999 6

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=98.68  E-value=1.9e-07  Score=84.00  Aligned_cols=172  Identities=17%  Similarity=0.173  Sum_probs=94.8

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCcccc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHH  107 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~  107 (332)
                      ....+|+|+|||+|..+..+.+.            +     +. +|+.-|+-. +.-...+.....  .-+..+.+++..
T Consensus        43 ~~~~~vLD~GcG~G~~~~~l~~~------------~-----~~-~v~~vD~s~-~~~~~a~~~~~~--~~~~~~~~d~~~  101 (253)
T 3g5l_A           43 FNQKTVLDLGCGFGWHCIYAAEH------------G-----AK-KVLGIDLSE-RMLTEAKRKTTS--PVVCYEQKAIED  101 (253)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHT------------T-----CS-EEEEEESCH-HHHHHHHHHCCC--TTEEEEECCGGG
T ss_pred             cCCCEEEEECCCCCHHHHHHHHc------------C-----CC-EEEEEECCH-HHHHHHHHhhcc--CCeEEEEcchhh
Confidence            35689999999999888776432            1     11 455555422 122222221111  112334556666


Q ss_pred             CCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEE
Q 044174          108 RLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVI  187 (332)
Q Consensus       108 ~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl  187 (332)
                      -.+|++++|+|+|+.++||+..                                      ...+|+.-++-|+|||++++
T Consensus       102 ~~~~~~~fD~v~~~~~l~~~~~--------------------------------------~~~~l~~~~~~LkpgG~l~~  143 (253)
T 3g5l_A          102 IAIEPDAYNVVLSSLALHYIAS--------------------------------------FDDICKKVYINLKSSGSFIF  143 (253)
T ss_dssp             CCCCTTCEEEEEEESCGGGCSC--------------------------------------HHHHHHHHHHHEEEEEEEEE
T ss_pred             CCCCCCCeEEEEEchhhhhhhh--------------------------------------HHHHHHHHHHHcCCCcEEEE
Confidence            6688999999999999999732                                      22456666788999999999


Q ss_pred             EecccCCCCCCCCc----chhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEeCC
Q 044174          188 IMPGIPYGMPYSHL----TNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELTNP  263 (332)
Q Consensus       188 ~~~gr~~~~~~~~~----~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~p  263 (332)
                      ..............    ..+.   .+...+.....++..... ...-....|.+|.+|++++++++| |++..++...|
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~t~~~~~~~l~~aG-F~~~~~~e~~~  218 (253)
T 3g5l_A          144 SVEHPVFTADGRQDWYTDETGN---KLHWPVDRYFNESMRTSH-FLGEDVQKYHRTVTTYIQTLLKNG-FQINSVIEPEP  218 (253)
T ss_dssp             EEECHHHHSSSSCSCEECSSCC---EEEEEECCTTCCCEEEEE-ETTEEEEEECCCHHHHHHHHHHTT-EEEEEEECCCC
T ss_pred             EeCCCccccCccccceeccCCc---eEEEEeccccccceEEEe-eccccCccEecCHHHHHHHHHHcC-CeeeeeecCCC
Confidence            86532100000000    0000   000000000011110000 001134567789999999999999 99988886554

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=98.68  E-value=2.7e-07  Score=85.94  Aligned_cols=167  Identities=9%  Similarity=-0.021  Sum_probs=95.1

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccc-cceeeecCCccc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQR-EYYSAGVPGSFH  106 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~-~~f~~~vpgSFy  106 (332)
                      +...+|+|+|||+|..++.++..                ..|..+|+--|.-..--...-+...... .--+..+.+++.
T Consensus       117 ~~~~~vLDiGcG~G~~~~~la~~----------------~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  180 (305)
T 3ocj_A          117 RPGCVVASVPCGWMSELLALDYS----------------ACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAW  180 (305)
T ss_dssp             CTTCEEEETTCTTCHHHHTSCCT----------------TCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGG
T ss_pred             CCCCEEEEecCCCCHHHHHHHHh----------------cCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchh
Confidence            44679999999999988765210                1234555555552211111111111110 111334556677


Q ss_pred             cCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEE
Q 044174          107 HRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMV  186 (332)
Q Consensus       107 ~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mv  186 (332)
                      .-.+| +++|+++|+.++|++...                                   .....+|+.-.+-|+|||+++
T Consensus       181 ~~~~~-~~fD~v~~~~~~~~~~~~-----------------------------------~~~~~~l~~~~~~LkpgG~l~  224 (305)
T 3ocj_A          181 KLDTR-EGYDLLTSNGLNIYEPDD-----------------------------------ARVTELYRRFWQALKPGGALV  224 (305)
T ss_dssp             GCCCC-SCEEEEECCSSGGGCCCH-----------------------------------HHHHHHHHHHHHHEEEEEEEE
T ss_pred             cCCcc-CCeEEEEECChhhhcCCH-----------------------------------HHHHHHHHHHHHhcCCCeEEE
Confidence            76677 999999999999985431                                   112246666678899999999


Q ss_pred             EEecccCCCCCCCCcc-----hhHHHHHHHHHHHHHHHhhccchhhhcccCcCc-ccCCHHHHHHHHHhCCceEEeEEEE
Q 044174          187 IIMPGIPYGMPYSHLT-----NGVMYDLMATIFMELANEQLITEAELDSFNLPI-YSASSEEMVKLVDKNGHFSIKTVEL  260 (332)
Q Consensus       187 l~~~gr~~~~~~~~~~-----~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~-y~ps~~E~~~~ie~~G~F~I~~le~  260 (332)
                      +...+++.........     ...........+.+    +         ....+ .+++.+|+++++++.| |++.+++.
T Consensus       225 i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~----~---------~~~~~~~~~~~~~~~~~l~~aG-F~~v~~~~  290 (305)
T 3ocj_A          225 TSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTR----L---------IQPRWNALRTHAQTRAQLEEAG-FTDLRFED  290 (305)
T ss_dssp             EECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHH----T---------TCCSCCCCCCHHHHHHHHHHTT-CEEEEEEC
T ss_pred             EEecCCCCcccccccceeeccccchhhhhhhHHHH----H---------HhhhhhccCCHHHHHHHHHHCC-CEEEEEEc
Confidence            9987765432211100     00000111111111    1         11112 4579999999999999 99988775

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.67  E-value=1.4e-07  Score=83.43  Aligned_cols=97  Identities=19%  Similarity=0.230  Sum_probs=64.0

Q ss_pred             ccccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 044174          104 SFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGG  183 (332)
Q Consensus       104 SFy~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG  183 (332)
                      ++....+|++++|+++++.++||+..                                      ...+|+.-.+-|+|||
T Consensus        92 d~~~~~~~~~~fD~v~~~~~l~~~~~--------------------------------------~~~~l~~~~~~L~pgG  133 (219)
T 1vlm_A           92 TAENLPLKDESFDFALMVTTICFVDD--------------------------------------PERALKEAYRILKKGG  133 (219)
T ss_dssp             BTTBCCSCTTCEEEEEEESCGGGSSC--------------------------------------HHHHHHHHHHHEEEEE
T ss_pred             ccccCCCCCCCeeEEEEcchHhhccC--------------------------------------HHHHHHHHHHHcCCCc
Confidence            33444467889999999999999632                                      1135555567789999


Q ss_pred             eEEEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEe
Q 044174          184 MMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELT  261 (332)
Q Consensus       184 ~mvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~  261 (332)
                      ++++......+              .....+..+ ..+       ..+.....+.+.+++++++++.| |++..+...
T Consensus       134 ~l~i~~~~~~~--------------~~~~~~~~~-~~~-------~~~~~~~~~~~~~~l~~~l~~~G-f~~~~~~~~  188 (219)
T 1vlm_A          134 YLIVGIVDRES--------------FLGREYEKN-KEK-------SVFYKNARFFSTEELMDLMRKAG-FEEFKVVQT  188 (219)
T ss_dssp             EEEEEEECSSS--------------HHHHHHHHT-TTC--------CCSTTCCCCCHHHHHHHHHHTT-CEEEEEEEE
T ss_pred             EEEEEEeCCcc--------------HHHHHHHHH-hcC-------cchhcccccCCHHHHHHHHHHCC-CeEEEEecc
Confidence            99999865432              111111111 111       12333456679999999999999 999887754

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=98.67  E-value=5e-07  Score=82.77  Aligned_cols=89  Identities=11%  Similarity=0.051  Sum_probs=60.0

Q ss_pred             CccccCCcCC-CceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 044174          103 GSFHHRLFPQ-SSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVS  181 (332)
Q Consensus       103 gSFy~~lfP~-~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~p  181 (332)
                      |++.+-.+++ +++|+|++..+||+|..   .                                 +...+++.-++-|+|
T Consensus       140 ~D~~~l~~~~~~~FD~V~~~~~l~~l~~---~---------------------------------~~~~~l~~~~~~Lkp  183 (252)
T 2gb4_A          140 CSIFDLPRANIGKFDRIWDRGALVAINP---G---------------------------------DHDRYADIILSLLRK  183 (252)
T ss_dssp             SCTTTGGGGCCCCEEEEEESSSTTTSCG---G---------------------------------GHHHHHHHHHHTEEE
T ss_pred             CccccCCcccCCCEEEEEEhhhhhhCCH---H---------------------------------HHHHHHHHHHHHcCC
Confidence            4444444443 79999999999999741   1                                 123466667788999


Q ss_pred             CCeEEEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEe
Q 044174          182 GGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELT  261 (332)
Q Consensus       182 GG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~  261 (332)
                      ||++++.....+.                          +        ...-|.|..+.+|++++++. + |+|..++.+
T Consensus       184 GG~l~l~~~~~~~--------------------------~--------~~~g~~~~~~~~el~~~l~~-~-f~v~~~~~~  227 (252)
T 2gb4_A          184 EFQYLVAVLSYDP--------------------------T--------KHAGPPFYVPSAELKRLFGT-K-CSMQCLEEV  227 (252)
T ss_dssp             EEEEEEEEEECCT--------------------------T--------SCCCSSCCCCHHHHHHHHTT-T-EEEEEEEEE
T ss_pred             CeEEEEEEEecCC--------------------------c--------cCCCCCCCCCHHHHHHHhhC-C-eEEEEEecc
Confidence            9999755333110                          0        01124456789999999986 6 999999977


Q ss_pred             CC
Q 044174          262 NP  263 (332)
Q Consensus       262 ~p  263 (332)
                      ++
T Consensus       228 ~~  229 (252)
T 2gb4_A          228 DA  229 (252)
T ss_dssp             EC
T ss_pred             cc
Confidence            63

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=98.67  E-value=4.2e-07  Score=87.08  Aligned_cols=153  Identities=15%  Similarity=0.126  Sum_probs=96.6

Q ss_pred             CceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcC-cccccceeeecCCcccc
Q 044174           29 NIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSL-PQQREYYSAGVPGSFHH  107 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l-~~~~~~f~~~vpgSFy~  107 (332)
                      ..-+|+|+|||+|..++.+++        +         .|.+.+..-|+|.  -....+.. +....-.+..++|+|+.
T Consensus       179 ~~~~v~DvGgG~G~~~~~l~~--------~---------~p~~~~~~~dlp~--v~~~a~~~~~~~~~~rv~~~~gD~~~  239 (353)
T 4a6d_A          179 VFPLMCDLGGGAGALAKECMS--------L---------YPGCKITVFDIPE--VVWTAKQHFSFQEEEQIDFQEGDFFK  239 (353)
T ss_dssp             GCSEEEEETCTTSHHHHHHHH--------H---------CSSCEEEEEECHH--HHHHHHHHSCC--CCSEEEEESCTTT
T ss_pred             cCCeEEeeCCCCCHHHHHHHH--------h---------CCCceeEeccCHH--HHHHHHHhhhhcccCceeeecCcccc
Confidence            345899999999988766643        2         3567888889985  23333322 21112346778999998


Q ss_pred             CCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEE
Q 044174          108 RLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVI  187 (332)
Q Consensus       108 ~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl  187 (332)
                      ..+|.  .|+++....||-.+.                                    .+-..+|+.-++-|+|||++++
T Consensus       240 ~~~~~--~D~~~~~~vlh~~~d------------------------------------~~~~~iL~~~~~al~pgg~lli  281 (353)
T 4a6d_A          240 DPLPE--ADLYILARVLHDWAD------------------------------------GKCSHLLERIYHTCKPGGGILV  281 (353)
T ss_dssp             SCCCC--CSEEEEESSGGGSCH------------------------------------HHHHHHHHHHHHHCCTTCEEEE
T ss_pred             CCCCC--ceEEEeeeecccCCH------------------------------------HHHHHHHHHHHhhCCCCCEEEE
Confidence            76664  599999999993221                                    1233578888889999999998


Q ss_pred             EecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEE
Q 044174          188 IMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVE  259 (332)
Q Consensus       188 ~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le  259 (332)
                      .=.-.++...      ......+-. +.=|+.             ..--.+|.+|+++++++.| |++.++.
T Consensus       282 ~e~~~~~~~~------~~~~~~~~d-l~ml~~-------------~~g~ert~~e~~~ll~~AG-f~~v~v~  332 (353)
T 4a6d_A          282 IESLLDEDRR------GPLLTQLYS-LNMLVQ-------------TEGQERTPTHYHMLLSSAG-FRDFQFK  332 (353)
T ss_dssp             EECCCCTTSC------CCHHHHHHH-HHHHHS-------------SSCCCCCHHHHHHHHHHHT-CEEEEEE
T ss_pred             EEeeeCCCCC------CCHHHHHHH-HHHHHh-------------CCCcCCCHHHHHHHHHHCC-CceEEEE
Confidence            7544332211      111111111 111111             1223479999999999999 9987765

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=98.67  E-value=2e-07  Score=88.40  Aligned_cols=154  Identities=10%  Similarity=0.094  Sum_probs=97.0

Q ss_pred             ceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCccc--ccceeeecCCcccc
Q 044174           30 IIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQ--REYYSAGVPGSFHH  107 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~--~~~f~~~vpgSFy~  107 (332)
                      ..+|+|+|||+|..+..+++        .         .|..++..-|+|.  .-...+.....  ..-.+..+.|+|..
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~--------~---------~p~~~~~~~D~~~--~~~~a~~~~~~~~~~~~v~~~~~d~~~  240 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLR--------R---------HPQLTGQIWDLPT--TRDAARKTIHAHDLGGRVEFFEKNLLD  240 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHH--------H---------CTTCEEEEEECGG--GHHHHHHHHHHTTCGGGEEEEECCTTC
T ss_pred             CCEEEEeCCCcCHHHHHHHH--------h---------CCCCeEEEEECHH--HHHHHHHHHHhcCCCCceEEEeCCccc
Confidence            68999999999998877643        1         2456777789853  33333322111  11235567888886


Q ss_pred             CC-cCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEE
Q 044174          108 RL-FPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMV  186 (332)
Q Consensus       108 ~l-fP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mv  186 (332)
                      .. ++++++|+++++..+|+++.                                    .+...+|+.-++-|+|||+++
T Consensus       241 ~~~~~~~~~D~v~~~~vlh~~~~------------------------------------~~~~~~l~~~~~~L~pgG~l~  284 (352)
T 3mcz_A          241 ARNFEGGAADVVMLNDCLHYFDA------------------------------------REAREVIGHAAGLVKPGGALL  284 (352)
T ss_dssp             GGGGTTCCEEEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHTEEEEEEEE
T ss_pred             CcccCCCCccEEEEecccccCCH------------------------------------HHHHHHHHHHHHHcCCCCEEE
Confidence            54 35567999999999997532                                    134457777788999999999


Q ss_pred             EEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEE
Q 044174          187 IIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTV  258 (332)
Q Consensus       187 l~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~l  258 (332)
                      +.-...++...      ...+..+..... |+.            ..-...++.+|+++++++.| |++.+.
T Consensus       285 i~e~~~~~~~~------~~~~~~~~~~~~-~~~------------~~~~~~~t~~e~~~ll~~aG-f~~~~~  336 (352)
T 3mcz_A          285 ILTMTMNDDRV------TPALSADFSLHM-MVN------------TNHGELHPTPWIAGVVRDAG-LAVGER  336 (352)
T ss_dssp             EEEECCCTTSS------SSHHHHHHHHHH-HHH------------STTCCCCCHHHHHHHHHHTT-CEEEEE
T ss_pred             EEEeccCCCCC------CCchHHHhhHHH-Hhh------------CCCCCcCCHHHHHHHHHHCC-Cceeee
Confidence            88655443321      111111111111 110            00123468999999999999 998773

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=98.67  E-value=3.6e-07  Score=81.09  Aligned_cols=107  Identities=12%  Similarity=0.211  Sum_probs=65.2

Q ss_pred             CceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCccccC
Q 044174           29 NIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHR  108 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~~  108 (332)
                      ...+|+|+|||+|..+..+.+.            +       .+++..|.-.+-....-+..+.. ..-+..+.+.+..-
T Consensus        37 ~~~~vLdiG~G~G~~~~~l~~~------------~-------~~~~~~D~s~~~~~~a~~~~~~~-~~~~~~~~~d~~~~   96 (246)
T 1y8c_A           37 VFDDYLDLACGTGNLTENLCPK------------F-------KNTWAVDLSQEMLSEAENKFRSQ-GLKPRLACQDISNL   96 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGG------------S-------SEEEEECSCHHHHHHHHHHHHHT-TCCCEEECCCGGGC
T ss_pred             CCCeEEEeCCCCCHHHHHHHHC------------C-------CcEEEEECCHHHHHHHHHHHhhc-CCCeEEEecccccC
Confidence            4579999999999999876431            0       12333343211111111111110 01223344555554


Q ss_pred             CcCCCceeEEEecC-ccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEE
Q 044174          109 LFPQSSIHFAHCSY-ALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVI  187 (332)
Q Consensus       109 lfP~~svd~~~S~~-alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl  187 (332)
                      .+| +++|+++++. ++||+...                                   .|...+|+.-++-|+|||++++
T Consensus        97 ~~~-~~fD~v~~~~~~l~~~~~~-----------------------------------~~~~~~l~~~~~~L~pgG~l~~  140 (246)
T 1y8c_A           97 NIN-RKFDLITCCLDSTNYIIDS-----------------------------------DDLKKYFKAVSNHLKEGGVFIF  140 (246)
T ss_dssp             CCS-CCEEEEEECTTGGGGCCSH-----------------------------------HHHHHHHHHHHTTEEEEEEEEE
T ss_pred             Ccc-CCceEEEEcCccccccCCH-----------------------------------HHHHHHHHHHHHhcCCCcEEEE
Confidence            556 8999999998 99996321                                   2455678888889999999999


Q ss_pred             Eecc
Q 044174          188 IMPG  191 (332)
Q Consensus       188 ~~~g  191 (332)
                      .+..
T Consensus       141 ~~~~  144 (246)
T 1y8c_A          141 DINS  144 (246)
T ss_dssp             EEEC
T ss_pred             EecC
Confidence            8765

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=98.66  E-value=2.5e-07  Score=88.76  Aligned_cols=158  Identities=16%  Similarity=0.171  Sum_probs=97.9

Q ss_pred             CceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccc--cceeeecCCccc
Q 044174           29 NIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQR--EYYSAGVPGSFH  106 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~--~~f~~~vpgSFy  106 (332)
                      +.-+|+|+|||+|..+..+++.                 .|..++..-|+|.  .-...+......  .--+.-+.|+|+
T Consensus       179 ~~~~vlDvG~G~G~~~~~l~~~-----------------~p~~~~~~~D~~~--~~~~a~~~~~~~~~~~~v~~~~~d~~  239 (363)
T 3dp7_A          179 HPKRLLDIGGNTGKWATQCVQY-----------------NKEVEVTIVDLPQ--QLEMMRKQTAGLSGSERIHGHGANLL  239 (363)
T ss_dssp             CCSEEEEESCTTCHHHHHHHHH-----------------STTCEEEEEECHH--HHHHHHHHHTTCTTGGGEEEEECCCC
T ss_pred             CCCEEEEeCCCcCHHHHHHHHh-----------------CCCCEEEEEeCHH--HHHHHHHHHHhcCcccceEEEEcccc
Confidence            3579999999999988776532                 2456788888853  333333321111  124566888998


Q ss_pred             cC--CcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCe
Q 044174          107 HR--LFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGM  184 (332)
Q Consensus       107 ~~--lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~  184 (332)
                      ..  .+| +++|+++++..||.++.                                    .+...+|+.-++-|+|||+
T Consensus       240 ~~~~~~p-~~~D~v~~~~vlh~~~~------------------------------------~~~~~~l~~~~~~L~pgG~  282 (363)
T 3dp7_A          240 DRDVPFP-TGFDAVWMSQFLDCFSE------------------------------------EEVISILTRVAQSIGKDSK  282 (363)
T ss_dssp             SSSCCCC-CCCSEEEEESCSTTSCH------------------------------------HHHHHHHHHHHHHCCTTCE
T ss_pred             ccCCCCC-CCcCEEEEechhhhCCH------------------------------------HHHHHHHHHHHHhcCCCcE
Confidence            75  477 89999999999985321                                    2344577777788999999


Q ss_pred             EEEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEE
Q 044174          185 MVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVE  259 (332)
Q Consensus       185 mvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le  259 (332)
                      +++.-...++...     ....+.. .....+|..          ........+|.+|+++++++.| |++.++.
T Consensus       283 l~i~e~~~~~~~~-----~~~~~~~-~~~~~~~~~----------~~~~~~~~~t~~e~~~ll~~AG-f~~v~~~  340 (363)
T 3dp7_A          283 VYIMETLWDRQRY-----ETASYCL-TQISLYFTA----------MANGNSKMFHSDDLIRCIENAG-LEVEEIQ  340 (363)
T ss_dssp             EEEEECCTTSCSS-----HHHHHHH-HHHHHHHHH----------SSCSSCCSCCHHHHHHHHHTTT-EEESCCC
T ss_pred             EEEEeeccCCccc-----cchhhHH-HHhhhhHHh----------hhCCCCcccCHHHHHHHHHHcC-CeEEEEE
Confidence            9887544433211     1111111 111111100          0112234569999999999999 9887654

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=98.66  E-value=4.3e-07  Score=85.60  Aligned_cols=152  Identities=18%  Similarity=0.115  Sum_probs=94.3

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcC-ccc-ccceeeecCCcc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSL-PQQ-REYYSAGVPGSF  105 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l-~~~-~~~f~~~vpgSF  105 (332)
                      ++..+|+|+|||+|..+..+++        .         .|..++..-|+|  ..-...+.. ... -.--+..+.|+|
T Consensus       168 ~~~~~vlDvG~G~G~~~~~l~~--------~---------~p~~~~~~~D~~--~~~~~a~~~~~~~~~~~~v~~~~~d~  228 (332)
T 3i53_A          168 AALGHVVDVGGGSGGLLSALLT--------A---------HEDLSGTVLDLQ--GPASAAHRRFLDTGLSGRAQVVVGSF  228 (332)
T ss_dssp             GGGSEEEEETCTTSHHHHHHHH--------H---------CTTCEEEEEECH--HHHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred             CCCCEEEEeCCChhHHHHHHHH--------H---------CCCCeEEEecCH--HHHHHHHHhhhhcCcCcCeEEecCCC
Confidence            4468999999999987766543        1         134556666874  233333221 111 012355577888


Q ss_pred             ccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeE
Q 044174          106 HHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMM  185 (332)
Q Consensus       106 y~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~m  185 (332)
                      + ..+|. ++|++++..+||..+.                                    .+...+|+.-++-|+|||++
T Consensus       229 ~-~~~p~-~~D~v~~~~vlh~~~~------------------------------------~~~~~~l~~~~~~L~pgG~l  270 (332)
T 3i53_A          229 F-DPLPA-GAGGYVLSAVLHDWDD------------------------------------LSAVAILRRCAEAAGSGGVV  270 (332)
T ss_dssp             T-SCCCC-SCSEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHHHTTTCEE
T ss_pred             C-CCCCC-CCcEEEEehhhccCCH------------------------------------HHHHHHHHHHHHhcCCCCEE
Confidence            8 45777 8999999999996332                                    12345677777889999999


Q ss_pred             EEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEe
Q 044174          186 VIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELT  261 (332)
Q Consensus       186 vl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~  261 (332)
                      ++.-.-.++..+      ...++..-     |+.             .....+|.+|+++++++.| |++.++...
T Consensus       271 ~i~e~~~~~~~~------~~~~d~~~-----~~~-------------~~~~~~t~~e~~~ll~~aG-f~~~~~~~~  321 (332)
T 3i53_A          271 LVIEAVAGDEHA------GTGMDLRM-----LTY-------------FGGKERSLAELGELAAQAG-LAVRAAHPI  321 (332)
T ss_dssp             EEEECCCC---C------CHHHHHHH-----HHH-------------HSCCCCCHHHHHHHHHHTT-EEEEEEEEC
T ss_pred             EEEeecCCCCCc------cHHHHHHH-----Hhh-------------CCCCCCCHHHHHHHHHHCC-CEEEEEEEC
Confidence            997654433211      11112111     111             1224578999999999999 998877643

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=98.65  E-value=5.8e-07  Score=86.38  Aligned_cols=153  Identities=18%  Similarity=0.200  Sum_probs=97.0

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcC-cccc-cceeeecCCcc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSL-PQQR-EYYSAGVPGSF  105 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l-~~~~-~~f~~~vpgSF  105 (332)
                      ++..+|+|+|||+|..+..+++.                 .|..+++.-|+|  +.-...+.. .... .--+..+.|+|
T Consensus       201 ~~~~~vlDvG~G~G~~~~~l~~~-----------------~p~~~~~~~D~~--~~~~~a~~~~~~~~l~~~v~~~~~d~  261 (369)
T 3gwz_A          201 SGAATAVDIGGGRGSLMAAVLDA-----------------FPGLRGTLLERP--PVAEEARELLTGRGLADRCEILPGDF  261 (369)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHH-----------------CTTCEEEEEECH--HHHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred             ccCcEEEEeCCCccHHHHHHHHH-----------------CCCCeEEEEcCH--HHHHHHHHhhhhcCcCCceEEeccCC
Confidence            45689999999999877665431                 245677777884  333333321 1110 12355677888


Q ss_pred             ccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeE
Q 044174          106 HHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMM  185 (332)
Q Consensus       106 y~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~m  185 (332)
                      + ..+|. ++|++++..+||+.+.                                    .+...+|+.-++-|+|||++
T Consensus       262 ~-~~~p~-~~D~v~~~~vlh~~~d------------------------------------~~~~~~L~~~~~~L~pgG~l  303 (369)
T 3gwz_A          262 F-ETIPD-GADVYLIKHVLHDWDD------------------------------------DDVVRILRRIATAMKPDSRL  303 (369)
T ss_dssp             T-TCCCS-SCSEEEEESCGGGSCH------------------------------------HHHHHHHHHHHTTCCTTCEE
T ss_pred             C-CCCCC-CceEEEhhhhhccCCH------------------------------------HHHHHHHHHHHHHcCCCCEE
Confidence            8 56777 8999999999997433                                    12235677777899999999


Q ss_pred             EEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEE
Q 044174          186 VIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVEL  260 (332)
Q Consensus       186 vl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~  260 (332)
                      ++.-.-.++...      .  .    ..+.++.--..        .  .-..+|.+|+++++++.| |++.++..
T Consensus       304 ~i~e~~~~~~~~------~--~----~~~~d~~~~~~--------~--~g~~~t~~e~~~ll~~aG-f~~~~~~~  355 (369)
T 3gwz_A          304 LVIDNLIDERPA------A--S----TLFVDLLLLVL--------V--GGAERSESEFAALLEKSG-LRVERSLP  355 (369)
T ss_dssp             EEEEEBCCSSCC------H--H----HHHHHHHHHHH--------H--SCCCBCHHHHHHHHHTTT-EEEEEEEE
T ss_pred             EEEEeccCCCCC------C--c----hhHhhHHHHhh--------c--CCccCCHHHHHHHHHHCC-CeEEEEEE
Confidence            997655443221      1  1    11222211000        0  123578999999999999 99988864

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=98.62  E-value=6.8e-07  Score=83.82  Aligned_cols=158  Identities=13%  Similarity=0.080  Sum_probs=97.8

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccc--cceeeecCCcc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQR--EYYSAGVPGSF  105 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~--~~f~~~vpgSF  105 (332)
                      .+..+|+|+|||+|..+..+.+.                 .|..+++..|++  +.-...+......  .--+..+.+++
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~-----------------~p~~~~~~~D~~--~~~~~a~~~~~~~~~~~~v~~~~~d~  224 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQH-----------------NPNAEIFGVDWA--SVLEVAKENARIQGVASRYHTIAGSA  224 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHH-----------------CTTCEEEEEECH--HHHHHHHHHHHHHTCGGGEEEEESCT
T ss_pred             CCCCEEEEECCCcCHHHHHHHHH-----------------CCCCeEEEEecH--HHHHHHHHHHHhcCCCcceEEEeccc
Confidence            44579999999999877665431                 134678888887  5544444321110  11244567788


Q ss_pred             ccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeE
Q 044174          106 HHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMM  185 (332)
Q Consensus       106 y~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~m  185 (332)
                      ....+|.+ +|+++++..+|.++.                                    .+...+|+.-++-|+|||++
T Consensus       225 ~~~~~~~~-~D~v~~~~~l~~~~~------------------------------------~~~~~~l~~~~~~L~pgG~l  267 (335)
T 2r3s_A          225 FEVDYGND-YDLVLLPNFLHHFDV------------------------------------ATCEQLLRKIKTALAVEGKV  267 (335)
T ss_dssp             TTSCCCSC-EEEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHHEEEEEEE
T ss_pred             ccCCCCCC-CcEEEEcchhccCCH------------------------------------HHHHHHHHHHHHhCCCCcEE
Confidence            77656665 999999999997422                                    23445677777889999999


Q ss_pred             EEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEe
Q 044174          186 VIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELT  261 (332)
Q Consensus       186 vl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~  261 (332)
                      ++.-...++...      ...+..+...+. +..            .-....++.+|+++++++.| |++.++..+
T Consensus       268 ~i~e~~~~~~~~------~~~~~~~~~~~~-~~~------------~~~~~~~t~~~~~~ll~~aG-f~~~~~~~~  323 (335)
T 2r3s_A          268 IVFDFIPNSDRI------TPPDAAAFSLVM-LAT------------TPNGDAYTFAEYESMFSNAG-FSHSQLHSL  323 (335)
T ss_dssp             EEEECCCCTTSS------CSHHHHHHHHHH-HHH------------SSSCCCCCHHHHHHHHHHTT-CSEEEEECC
T ss_pred             EEEeecCCCCcC------CchHHHHHHHHH-Hee------------CCCCCcCCHHHHHHHHHHCC-CCeeeEEEC
Confidence            888665543211      011111111111 110            00124569999999999999 988776543

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=98.60  E-value=1e-06  Score=77.41  Aligned_cols=153  Identities=13%  Similarity=0.057  Sum_probs=83.0

Q ss_pred             ceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccc-----cceeeecCCc
Q 044174           30 IIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQR-----EYYSAGVPGS  104 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~-----~~f~~~vpgS  104 (332)
                      ..+|+|+|||+|..+..+.+.                 .+..+|+--|.-..--...-+.+....     ..-+..+-++
T Consensus        30 ~~~vLDiGcG~G~~~~~l~~~-----------------~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d   92 (217)
T 3jwh_A           30 ARRVIDLGCGQGNLLKILLKD-----------------SFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGA   92 (217)
T ss_dssp             CCEEEEETCTTCHHHHHHHHC-----------------TTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECC
T ss_pred             CCEEEEeCCCCCHHHHHHHhh-----------------CCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCC
Confidence            469999999999998876531                 112344444442211111111111100     0012223334


Q ss_pred             cccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCe
Q 044174          105 FHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGM  184 (332)
Q Consensus       105 Fy~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~  184 (332)
                      +....++.+++|+++|+.++||+..                                    .++..+|+.-++-|+|||.
T Consensus        93 ~~~~~~~~~~fD~v~~~~~l~~~~~------------------------------------~~~~~~l~~~~~~LkpgG~  136 (217)
T 3jwh_A           93 LTYQDKRFHGYDAATVIEVIEHLDL------------------------------------SRLGAFERVLFEFAQPKIV  136 (217)
T ss_dssp             TTSCCGGGCSCSEEEEESCGGGCCH------------------------------------HHHHHHHHHHHTTTCCSEE
T ss_pred             cccccccCCCcCEEeeHHHHHcCCH------------------------------------HHHHHHHHHHHHHcCCCEE
Confidence            4344456689999999999999732                                    1345677777788999997


Q ss_pred             EEEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHH----HHHHhCCceEEeEEEE
Q 044174          185 MVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMV----KLVDKNGHFSIKTVEL  260 (332)
Q Consensus       185 mvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~----~~ie~~G~F~I~~le~  260 (332)
                      ++++....          ..       ..+..+.. +..      ...-..++.+.+|++    .++++.| |+|+....
T Consensus       137 li~~~~~~----------~~-------~~~~~~~~-~~~------~~~~~~~~~~~~~l~~~~~~~~~~~G-f~v~~~~~  191 (217)
T 3jwh_A          137 IVTTPNIE----------YN-------VKFANLPA-GKL------RHKDHRFEWTRSQFQNWANKITERFA-YNVQFQPI  191 (217)
T ss_dssp             EEEEEBHH----------HH-------HHTC------------------CCSCBCHHHHHHHHHHHHHHSS-EEEEECCC
T ss_pred             EEEccCcc----------cc-------hhhccccc-ccc------cccccccccCHHHHHHHHHHHHHHcC-ceEEEEec
Confidence            76654210          01       11111100 100      111234567899999    8888999 98865543

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=98.59  E-value=1.4e-07  Score=87.54  Aligned_cols=121  Identities=9%  Similarity=0.079  Sum_probs=67.5

Q ss_pred             cCCccccCCcCCCceeEEE-ecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044174          101 VPGSFHHRLFPQSSIHFAH-CSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEI  179 (332)
Q Consensus       101 vpgSFy~~lfP~~svd~~~-S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL  179 (332)
                      +.+++..-.+ ++++|+|+ ++.++||++.                                    .|...+|+.-++-|
T Consensus       138 ~~~d~~~~~~-~~~fD~v~~~~~~~~~~~~------------------------------------~~~~~~l~~~~~~L  180 (299)
T 3g2m_A          138 VQGDMSAFAL-DKRFGTVVISSGSINELDE------------------------------------ADRRGLYASVREHL  180 (299)
T ss_dssp             EECBTTBCCC-SCCEEEEEECHHHHTTSCH------------------------------------HHHHHHHHHHHHHE
T ss_pred             EeCchhcCCc-CCCcCEEEECCcccccCCH------------------------------------HHHHHHHHHHHHHc
Confidence            3344444333 67999877 5678888532                                    24456777778889


Q ss_pred             ccCCeEEEEecccCCCCCCCCcchhHHHHH-HHHHHHHHHHhhccc---------------hhhhcccCcCcccCCHHHH
Q 044174          180 VSGGMMVIIMPGIPYGMPYSHLTNGVMYDL-MATIFMELANEQLIT---------------EAELDSFNLPIYSASSEEM  243 (332)
Q Consensus       180 ~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~-l~~al~~mv~eGli~---------------~e~~d~fn~P~y~ps~~E~  243 (332)
                      +|||++++............. .....+.. -...+.  .......               ......+...+++.+.+|+
T Consensus       181 ~pgG~l~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el  257 (299)
T 3g2m_A          181 EPGGKFLLSLAMSEAAESEPL-ERKQELPGRSGRRYV--LHVRHLPAEEIQEITIHPADETTDPFVVCTHRRRLLAPDQV  257 (299)
T ss_dssp             EEEEEEEEEEECCHHHHSCCC-CC---------------CCEEEEEEEEEEEEEEEESCC--CCCCEEEEEEEEECHHHH
T ss_pred             CCCcEEEEEeecCccccccch-hccceeecCCCcEEE--EEEEEeccccEEEEEEEeccCCCCcEEEEEEEEEEeCHHHH
Confidence            999999999887643210000 00000000 000000  0000000               0011123345567899999


Q ss_pred             HHHHHhCCceEEeEEEEeC
Q 044174          244 VKLVDKNGHFSIKTVELTN  262 (332)
Q Consensus       244 ~~~ie~~G~F~I~~le~~~  262 (332)
                      ++++++.| |++..++.+.
T Consensus       258 ~~ll~~aG-F~v~~~~~~~  275 (299)
T 3g2m_A          258 VRELVRSG-FDVIAQTPFA  275 (299)
T ss_dssp             HHHHHHTT-CEEEEEEEEC
T ss_pred             HHHHHHCC-CEEEEEEecC
Confidence            99999999 9999999776

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=98.58  E-value=6.4e-07  Score=85.51  Aligned_cols=156  Identities=14%  Similarity=0.165  Sum_probs=93.2

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcC-cccc-cceeeecCCcc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSL-PQQR-EYYSAGVPGSF  105 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l-~~~~-~~f~~~vpgSF  105 (332)
                      .+..+|+|+|||+|..++.+.+.                 .|..+++.-|+|  +.-...+.. .... .--+..+.++|
T Consensus       181 ~~~~~vlDvG~G~G~~~~~l~~~-----------------~~~~~~~~~D~~--~~~~~a~~~~~~~~~~~~v~~~~~d~  241 (374)
T 1qzz_A          181 SAVRHVLDVGGGNGGMLAAIALR-----------------APHLRGTLVELA--GPAERARRRFADAGLADRVTVAEGDF  241 (374)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHH-----------------CTTCEEEEEECH--HHHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred             CCCCEEEEECCCcCHHHHHHHHH-----------------CCCCEEEEEeCH--HHHHHHHHHHHhcCCCCceEEEeCCC
Confidence            44679999999999877766432                 134677778872  333333321 1110 11244566777


Q ss_pred             ccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeE
Q 044174          106 HHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMM  185 (332)
Q Consensus       106 y~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~m  185 (332)
                      .+ .+|.+ +|+++++..+|+++.                                    .+...+|+.-.+-|+|||++
T Consensus       242 ~~-~~~~~-~D~v~~~~vl~~~~~------------------------------------~~~~~~l~~~~~~L~pgG~l  283 (374)
T 1qzz_A          242 FK-PLPVT-ADVVLLSFVLLNWSD------------------------------------EDALTILRGCVRALEPGGRL  283 (374)
T ss_dssp             TS-CCSCC-EEEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHHEEEEEEE
T ss_pred             CC-cCCCC-CCEEEEeccccCCCH------------------------------------HHHHHHHHHHHHhcCCCcEE
Confidence            76 45664 999999999986432                                    12235666667889999999


Q ss_pred             EEEec--ccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEeC
Q 044174          186 VIIMP--GIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELTN  262 (332)
Q Consensus       186 vl~~~--gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~  262 (332)
                      ++.-.  ..++..       ...+..+...+. ++..|             ...++.+|+++++++.| |++.++....
T Consensus       284 ~i~e~~~~~~~~~-------~~~~~~~~~~~~-~~~~~-------------~~~~~~~~~~~ll~~aG-f~~~~~~~~~  340 (374)
T 1qzz_A          284 LVLDRADVEGDGA-------DRFFSTLLDLRM-LTFMG-------------GRVRTRDEVVDLAGSAG-LALASERTSG  340 (374)
T ss_dssp             EEEECCH--------------HHHHHHHHHHH-HHHHS-------------CCCCCHHHHHHHHHTTT-EEEEEEEEEC
T ss_pred             EEEechhhcCCCC-------CcchhhhcchHH-HHhCC-------------CcCCCHHHHHHHHHHCC-CceEEEEECC
Confidence            98765  322211       111111111111 11111             24579999999999999 9998887664

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=98.57  E-value=1.8e-07  Score=81.83  Aligned_cols=156  Identities=14%  Similarity=0.081  Sum_probs=86.2

Q ss_pred             ceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCcccc-C
Q 044174           30 IIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHH-R  108 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~-~  108 (332)
                      ..+|+|+|||+|..+..+.+.                   ..+|+.-|.-. ......+...  ...+..+-...+-. .
T Consensus        53 ~~~vLdiG~G~G~~~~~l~~~-------------------~~~v~~vD~s~-~~~~~a~~~~--~~~~~~~~~~~~~~~~  110 (227)
T 3e8s_A           53 PERVLDLGCGEGWLLRALADR-------------------GIEAVGVDGDR-TLVDAARAAG--AGEVHLASYAQLAEAK  110 (227)
T ss_dssp             CSEEEEETCTTCHHHHHHHTT-------------------TCEEEEEESCH-HHHHHHHHTC--SSCEEECCHHHHHTTC
T ss_pred             CCEEEEeCCCCCHHHHHHHHC-------------------CCEEEEEcCCH-HHHHHHHHhc--ccccchhhHHhhcccc
Confidence            489999999999988766432                   12344444321 1112222221  11111111111111 1


Q ss_pred             CcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEE
Q 044174          109 LFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVII  188 (332)
Q Consensus       109 lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~  188 (332)
                      ..+.+++|+++|+.++| ... |                                     ..+|+.-++-|+|||++++.
T Consensus       111 ~~~~~~fD~v~~~~~l~-~~~-~-------------------------------------~~~l~~~~~~L~pgG~l~~~  151 (227)
T 3e8s_A          111 VPVGKDYDLICANFALL-HQD-I-------------------------------------IELLSAMRTLLVPGGALVIQ  151 (227)
T ss_dssp             SCCCCCEEEEEEESCCC-SSC-C-------------------------------------HHHHHHHHHTEEEEEEEEEE
T ss_pred             cccCCCccEEEECchhh-hhh-H-------------------------------------HHHHHHHHHHhCCCeEEEEE
Confidence            23455699999999999 211 1                                     13566666889999999999


Q ss_pred             ecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEe
Q 044174          189 MPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELT  261 (332)
Q Consensus       189 ~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~  261 (332)
                      .......... .         +...|....-.|..    -.-...+++++|.+|++.++++.| |++..++..
T Consensus       152 ~~~~~~~~~~-~---------~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~aG-f~~~~~~~~  209 (227)
T 3e8s_A          152 TLHPWSVADG-D---------YQDGWREESFAGFA----GDWQPMPWYFRTLASWLNALDMAG-LRLVSLQEP  209 (227)
T ss_dssp             ECCTTTTCTT-C---------CSCEEEEECCTTSS----SCCCCEEEEECCHHHHHHHHHHTT-EEEEEEECC
T ss_pred             ecCccccCcc-c---------cccccchhhhhccc----cCcccceEEEecHHHHHHHHHHcC-CeEEEEecC
Confidence            8765432110 0         00000000000000    001246788999999999999999 999988864

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=98.57  E-value=6.7e-07  Score=79.44  Aligned_cols=169  Identities=18%  Similarity=0.169  Sum_probs=91.9

Q ss_pred             CceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCccccC
Q 044174           29 NIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHR  108 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~~  108 (332)
                      ...+|+|+|||+|..+..+.+.            +     . -+|+..|.-. +.-...+......  -+..+.+++...
T Consensus        43 ~~~~vLdiG~G~G~~~~~l~~~------------~-----~-~~v~~vD~s~-~~~~~a~~~~~~~--~~~~~~~d~~~~  101 (243)
T 3bkw_A           43 GGLRIVDLGCGFGWFCRWAHEH------------G-----A-SYVLGLDLSE-KMLARARAAGPDT--GITYERADLDKL  101 (243)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHT------------T-----C-SEEEEEESCH-HHHHHHHHTSCSS--SEEEEECCGGGC
T ss_pred             CCCEEEEEcCcCCHHHHHHHHC------------C-----C-CeEEEEcCCH-HHHHHHHHhcccC--CceEEEcChhhc
Confidence            4579999999999988766432            1     0 1444444321 1222222211111  123344566666


Q ss_pred             CcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEE
Q 044174          109 LFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVII  188 (332)
Q Consensus       109 lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~  188 (332)
                      .+|++++|+++++.++||+..                                      ...+|+.-++-|+|||++++.
T Consensus       102 ~~~~~~fD~v~~~~~l~~~~~--------------------------------------~~~~l~~~~~~L~pgG~l~~~  143 (243)
T 3bkw_A          102 HLPQDSFDLAYSSLALHYVED--------------------------------------VARLFRTVHQALSPGGHFVFS  143 (243)
T ss_dssp             CCCTTCEEEEEEESCGGGCSC--------------------------------------HHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCCCCCceEEEEeccccccch--------------------------------------HHHHHHHHHHhcCcCcEEEEE
Confidence            678999999999999999642                                      113556666789999999998


Q ss_pred             ecccCCCCCCCCcc----hhH-HHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEeCC
Q 044174          189 MPGIPYGMPYSHLT----NGV-MYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELTNP  263 (332)
Q Consensus       189 ~~gr~~~~~~~~~~----~~~-~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~p  263 (332)
                      ..............    .+. .+     .+.....++.....-+ .-....|.+|.+|+++++++.| |++..++...|
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-~~~~~~~~~t~~~~~~~l~~aG-F~~~~~~~~~~  216 (243)
T 3bkw_A          144 TEHPIYMAPARPGWAIDAEGRRTW-----PIDRYLVEGPRKTDWL-AKGVVKHHRTVGTTLNALIRSG-FAIEHVEEFCP  216 (243)
T ss_dssp             EECHHHHCCSSCSCEECTTSCEEE-----EECCTTCCEEECTTHH-HHSCCEEECCHHHHHHHHHHTT-CEEEEEEECCC
T ss_pred             eCCcccccCcCcceeecCCCceEE-----eecccccccceeeeec-cCceEEEeccHHHHHHHHHHcC-CEeeeeccCCC
Confidence            75321000000000    000 00     0000000000000000 0034567789999999999999 99988876543

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=98.57  E-value=4e-07  Score=82.52  Aligned_cols=105  Identities=12%  Similarity=0.167  Sum_probs=65.2

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCcccc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHH  107 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~  107 (332)
                      ++..+|+|+|||+|..+..+...            +       .+|+..|+-. +.....+....  +  +..+-+.+..
T Consensus        49 ~~~~~vLDiGcG~G~~~~~l~~~------------~-------~~v~gvD~s~-~~~~~a~~~~~--~--~~~~~~d~~~  104 (263)
T 3pfg_A           49 PKAASLLDVACGTGMHLRHLADS------------F-------GTVEGLELSA-DMLAIARRRNP--D--AVLHHGDMRD  104 (263)
T ss_dssp             TTCCEEEEETCTTSHHHHHHTTT------------S-------SEEEEEESCH-HHHHHHHHHCT--T--SEEEECCTTT
T ss_pred             CCCCcEEEeCCcCCHHHHHHHHc------------C-------CeEEEEECCH-HHHHHHHhhCC--C--CEEEECChHH
Confidence            44579999999999988776321            0       1344444321 12222222111  1  2223445544


Q ss_pred             CCcCCCceeEEEecC-ccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEE
Q 044174          108 RLFPQSSIHFAHCSY-ALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMV  186 (332)
Q Consensus       108 ~lfP~~svd~~~S~~-alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mv  186 (332)
                      -.+ ++++|+|+|+. ++||+..                                   ..|+..+|+.-++-|+|||+++
T Consensus       105 ~~~-~~~fD~v~~~~~~l~~~~~-----------------------------------~~~~~~~l~~~~~~L~pgG~l~  148 (263)
T 3pfg_A          105 FSL-GRRFSAVTCMFSSIGHLAG-----------------------------------QAELDAALERFAAHVLPDGVVV  148 (263)
T ss_dssp             CCC-SCCEEEEEECTTGGGGSCH-----------------------------------HHHHHHHHHHHHHTEEEEEEEE
T ss_pred             CCc-cCCcCEEEEcCchhhhcCC-----------------------------------HHHHHHHHHHHHHhcCCCcEEE
Confidence            333 78999999998 9999643                                   1255567888889999999999


Q ss_pred             EEeccc
Q 044174          187 IIMPGI  192 (332)
Q Consensus       187 l~~~gr  192 (332)
                      +.....
T Consensus       149 i~~~~~  154 (263)
T 3pfg_A          149 VEPWWF  154 (263)
T ss_dssp             ECCCCC
T ss_pred             EEeccC
Confidence            975443

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=98.55  E-value=3.2e-06  Score=79.51  Aligned_cols=151  Identities=19%  Similarity=0.201  Sum_probs=93.8

Q ss_pred             eEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhc-Ccccc-cceeeecCCccccC
Q 044174           31 IRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTS-LPQQR-EYYSAGVPGSFHHR  108 (332)
Q Consensus        31 ~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~-l~~~~-~~f~~~vpgSFy~~  108 (332)
                      .+|+|+|||+|..+..+++        .         .|..+++.-|+|.  .-...+. +.... .--+..+.|+|.+ 
T Consensus       169 ~~vlDvG~G~G~~~~~l~~--------~---------~p~~~~~~~D~~~--~~~~a~~~~~~~~~~~~v~~~~~d~~~-  228 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQ--------A---------EPSARGVMLDREG--SLGVARDNLSSLLAGERVSLVGGDMLQ-  228 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHH--------H---------CTTCEEEEEECTT--CTHHHHHHTHHHHHTTSEEEEESCTTT-
T ss_pred             CEEEEeCCCchHHHHHHHH--------H---------CCCCEEEEeCcHH--HHHHHHHHHhhcCCCCcEEEecCCCCC-
Confidence            8999999999987776643        1         2356788889843  2332222 21110 1125557788887 


Q ss_pred             CcCCCceeEEEecCccc-cccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEE
Q 044174          109 LFPQSSIHFAHCSYALH-WLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVI  187 (332)
Q Consensus       109 lfP~~svd~~~S~~alH-WLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl  187 (332)
                      .+| +++|+++++..+| | +.                                    .+...+|+.-++-|+|||++++
T Consensus       229 ~~~-~~~D~v~~~~vl~~~-~~------------------------------------~~~~~~l~~~~~~L~pgG~l~i  270 (334)
T 2ip2_A          229 EVP-SNGDIYLLSRIIGDL-DE------------------------------------AASLRLLGNCREAMAGDGRVVV  270 (334)
T ss_dssp             CCC-SSCSEEEEESCGGGC-CH------------------------------------HHHHHHHHHHHHHSCTTCEEEE
T ss_pred             CCC-CCCCEEEEchhccCC-CH------------------------------------HHHHHHHHHHHHhcCCCCEEEE
Confidence            467 6899999999998 6 11                                    1223567777788999999999


Q ss_pred             EecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEe
Q 044174          188 IMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELT  261 (332)
Q Consensus       188 ~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~  261 (332)
                      .-...++...  . .....++    . .-|...             .-..++.+|+++++++.| |++.++...
T Consensus       271 ~e~~~~~~~~--~-~~~~~~~----~-~~~~~~-------------~~~~~t~~e~~~ll~~aG-f~~~~~~~~  322 (334)
T 2ip2_A          271 IERTISASEP--S-PMSVLWD----V-HLFMAC-------------AGRHRTTEEVVDLLGRGG-FAVERIVDL  322 (334)
T ss_dssp             EECCBCSSSC--C-HHHHHHH----H-HHHHHH-------------SCCCCBHHHHHHHHHHTT-EEEEEEEEE
T ss_pred             EEeccCCCCC--c-chhHHhh----h-HhHhhC-------------CCcCCCHHHHHHHHHHCC-CceeEEEEC
Confidence            8655443221  0 0111111    1 111110             123458999999999999 998877644

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=98.54  E-value=1.3e-06  Score=75.80  Aligned_cols=141  Identities=11%  Similarity=0.009  Sum_probs=85.8

Q ss_pred             EEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCccccCCcC
Q 044174           32 RLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHRLFP  111 (332)
Q Consensus        32 ~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~~lfP  111 (332)
                      +|+|+|||+|..+..+.+.                   ..+|+..|.-.. .-...+........-+..+.+++..-.+|
T Consensus        32 ~vLdiGcG~G~~~~~l~~~-------------------~~~v~~vD~s~~-~~~~a~~~~~~~~~~~~~~~~d~~~~~~~   91 (202)
T 2kw5_A           32 KILCLAEGEGRNACFLASL-------------------GYEVTAVDQSSV-GLAKAKQLAQEKGVKITTVQSNLADFDIV   91 (202)
T ss_dssp             EEEECCCSCTHHHHHHHTT-------------------TCEEEEECSSHH-HHHHHHHHHHHHTCCEEEECCBTTTBSCC
T ss_pred             CEEEECCCCCHhHHHHHhC-------------------CCeEEEEECCHH-HHHHHHHHHHhcCCceEEEEcChhhcCCC
Confidence            9999999999998776431                   013444443211 11111111000001223344555555578


Q ss_pred             CCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEecc
Q 044174          112 QSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIMPG  191 (332)
Q Consensus       112 ~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~~~g  191 (332)
                      ++++|+++++. .||    +.                                 .|...+|+.-.+-|+|||++++....
T Consensus        92 ~~~fD~v~~~~-~~~----~~---------------------------------~~~~~~l~~~~~~L~pgG~l~~~~~~  133 (202)
T 2kw5_A           92 ADAWEGIVSIF-CHL----PS---------------------------------SLRQQLYPKVYQGLKPGGVFILEGFA  133 (202)
T ss_dssp             TTTCSEEEEEC-CCC----CH---------------------------------HHHHHHHHHHHTTCCSSEEEEEEEEC
T ss_pred             cCCccEEEEEh-hcC----CH---------------------------------HHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            89999999954 454    10                                 23455677777889999999999877


Q ss_pred             cCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEeC
Q 044174          192 IPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELTN  262 (332)
Q Consensus       192 r~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~  262 (332)
                      ..+..          +           ..|        ....+.++.+.+|++++++  | |+|..++...
T Consensus       134 ~~~~~----------~-----------~~~--------~~~~~~~~~~~~~l~~~l~--G-f~v~~~~~~~  172 (202)
T 2kw5_A          134 PEQLQ----------Y-----------NTG--------GPKDLDLLPKLETLQSELP--S-LNWLIANNLE  172 (202)
T ss_dssp             TTTGG----------G-----------TSC--------CSSSGGGCCCHHHHHHHCS--S-SCEEEEEEEE
T ss_pred             ccccc----------C-----------CCC--------CCCcceeecCHHHHHHHhc--C-ceEEEEEEEE
Confidence            54310          0           001        1124578999999999999  8 9999988765

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=98.52  E-value=1.1e-06  Score=84.32  Aligned_cols=152  Identities=17%  Similarity=0.094  Sum_probs=93.6

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCcccc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHH  107 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~  107 (332)
                      ++..+|+|+|||+|..+..+.+.                 .|.++++.-|+|  +.....+.+   ..  +..+.|+|+.
T Consensus       208 ~~~~~vLDvG~G~G~~~~~l~~~-----------------~~~~~~~~~D~~--~~~~~a~~~---~~--v~~~~~d~~~  263 (372)
T 1fp1_D          208 EGISTLVDVGGGSGRNLELIISK-----------------YPLIKGINFDLP--QVIENAPPL---SG--IEHVGGDMFA  263 (372)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHH-----------------CTTCEEEEEECH--HHHTTCCCC---TT--EEEEECCTTT
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHH-----------------CCCCeEEEeChH--HHHHhhhhc---CC--CEEEeCCccc
Confidence            44679999999999988776431                 235677777773  222222222   12  5567788888


Q ss_pred             CCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEE
Q 044174          108 RLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVI  187 (332)
Q Consensus       108 ~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl  187 (332)
                       .+|.  +|+++++.+||+++.                                    .+...+|+.-++-|+|||++++
T Consensus       264 -~~~~--~D~v~~~~~lh~~~d------------------------------------~~~~~~l~~~~~~L~pgG~l~i  304 (372)
T 1fp1_D          264 -SVPQ--GDAMILKAVCHNWSD------------------------------------EKCIEFLSNCHKALSPNGKVII  304 (372)
T ss_dssp             -CCCC--EEEEEEESSGGGSCH------------------------------------HHHHHHHHHHHHHEEEEEEEEE
T ss_pred             -CCCC--CCEEEEecccccCCH------------------------------------HHHHHHHHHHHHhcCCCCEEEE
Confidence             5776  899999999997433                                    1223567777788999999998


Q ss_pred             EecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEE
Q 044174          188 IMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVEL  260 (332)
Q Consensus       188 ~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~  260 (332)
                      .-...++...     .. ..+.. ..+.++.--..      .    -...++.+|+++++++.| |++.++..
T Consensus       305 ~e~~~~~~~~-----~~-~~~~~-~~~~d~~~~~~------~----~~~~~t~~e~~~ll~~aG-f~~~~~~~  359 (372)
T 1fp1_D          305 VEFILPEEPN-----TS-EESKL-VSTLDNLMFIT------V----GGRERTEKQYEKLSKLSG-FSKFQVAC  359 (372)
T ss_dssp             EEEEECSSCC-----SS-HHHHH-HHHHHHHHHHH------H----SCCCEEHHHHHHHHHHTT-CSEEEEEE
T ss_pred             EEeccCCCCc-----cc-hHHHH-HHHhhHHHHhc------c----CCccCCHHHHHHHHHHCC-CceEEEEE
Confidence            8544333211     00 11101 11112110000      0    012359999999999999 98877764

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=98.52  E-value=1.3e-06  Score=82.94  Aligned_cols=156  Identities=15%  Similarity=0.100  Sum_probs=95.0

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcC-ccc-ccceeeecCCcc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSL-PQQ-REYYSAGVPGSF  105 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l-~~~-~~~f~~~vpgSF  105 (332)
                      .+..+|+|+|||+|..+..+.+.                 .|.++++.-|+|  +.-...+.. ... ..--+.-+.+++
T Consensus       182 ~~~~~vLDvG~G~G~~~~~l~~~-----------------~~~~~~~~~D~~--~~~~~a~~~~~~~~~~~~v~~~~~d~  242 (360)
T 1tw3_A          182 TNVRHVLDVGGGKGGFAAAIARR-----------------APHVSATVLEMA--GTVDTARSYLKDEGLSDRVDVVEGDF  242 (360)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHH-----------------CTTCEEEEEECT--THHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred             ccCcEEEEeCCcCcHHHHHHHHh-----------------CCCCEEEEecCH--HHHHHHHHHHHhcCCCCceEEEeCCC
Confidence            34579999999999988776431                 135677788883  344433322 111 011244566777


Q ss_pred             ccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeE
Q 044174          106 HHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMM  185 (332)
Q Consensus       106 y~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~m  185 (332)
                      .+ .+|.+ +|+++++..+|.++.                                    .+...+|+.-++-|+|||++
T Consensus       243 ~~-~~~~~-~D~v~~~~vl~~~~~------------------------------------~~~~~~l~~~~~~L~pgG~l  284 (360)
T 1tw3_A          243 FE-PLPRK-ADAIILSFVLLNWPD------------------------------------HDAVRILTRCAEALEPGGRI  284 (360)
T ss_dssp             TS-CCSSC-EEEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHTEEEEEEE
T ss_pred             CC-CCCCC-ccEEEEcccccCCCH------------------------------------HHHHHHHHHHHHhcCCCcEE
Confidence            76 45654 999999999986321                                    12235666667889999999


Q ss_pred             EEEecc-cCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEeC
Q 044174          186 VIIMPG-IPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELTN  262 (332)
Q Consensus       186 vl~~~g-r~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~  262 (332)
                      ++.-.. .++...      . .+..+.... -|+..|             ...++.+|+++++++.| |++.++....
T Consensus       285 ~i~e~~~~~~~~~------~-~~~~~~~~~-~~~~~~-------------~~~~t~~e~~~ll~~aG-f~~~~~~~~~  340 (360)
T 1tw3_A          285 LIHERDDLHENSF------N-EQFTELDLR-MLVFLG-------------GALRTREKWDGLAASAG-LVVEEVRQLP  340 (360)
T ss_dssp             EEEECCBCGGGCC------S-HHHHHHHHH-HHHHHS-------------CCCCBHHHHHHHHHHTT-EEEEEEEEEE
T ss_pred             EEEEEeccCCCCC------c-chhhhccHH-HhhhcC-------------CcCCCHHHHHHHHHHCC-CeEEEEEeCC
Confidence            987554 332210      0 111111111 111111             24579999999999999 9998877654

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.50  E-value=1.1e-06  Score=74.93  Aligned_cols=129  Identities=12%  Similarity=0.111  Sum_probs=80.7

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCcccc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHH  107 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~  107 (332)
                      +...+|+|+|||+|..+..+...            +       .+++..|.-. +.-...+....  +  +..+.+++..
T Consensus        45 ~~~~~vLdiG~G~G~~~~~l~~~------------~-------~~v~~~D~~~-~~~~~a~~~~~--~--~~~~~~d~~~  100 (195)
T 3cgg_A           45 PRGAKILDAGCGQGRIGGYLSKQ------------G-------HDVLGTDLDP-ILIDYAKQDFP--E--ARWVVGDLSV  100 (195)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHT------------T-------CEEEEEESCH-HHHHHHHHHCT--T--SEEEECCTTT
T ss_pred             cCCCeEEEECCCCCHHHHHHHHC------------C-------CcEEEEcCCH-HHHHHHHHhCC--C--CcEEEccccc
Confidence            34579999999999988876532            0       1233333221 11111111101  1  1223344444


Q ss_pred             CCcCCCceeEEEec-CccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEE
Q 044174          108 RLFPQSSIHFAHCS-YALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMV  186 (332)
Q Consensus       108 ~lfP~~svd~~~S~-~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mv  186 (332)
                      ..+|++++|+++++ ..+|+++.                                    .+...+|+.-.+-|+|||+++
T Consensus       101 ~~~~~~~~D~i~~~~~~~~~~~~------------------------------------~~~~~~l~~~~~~l~~~G~l~  144 (195)
T 3cgg_A          101 DQISETDFDLIVSAGNVMGFLAE------------------------------------DGREPALANIHRALGADGRAV  144 (195)
T ss_dssp             SCCCCCCEEEEEECCCCGGGSCH------------------------------------HHHHHHHHHHHHHEEEEEEEE
T ss_pred             CCCCCCceeEEEECCcHHhhcCh------------------------------------HHHHHHHHHHHHHhCCCCEEE
Confidence            45678899999998 67877532                                    133456777778899999999


Q ss_pred             EEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEE
Q 044174          187 IIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVEL  260 (332)
Q Consensus       187 l~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~  260 (332)
                      +.+....                                           ..+.+++...+++.| |++..+..
T Consensus       145 ~~~~~~~-------------------------------------------~~~~~~~~~~l~~~G-f~~~~~~~  174 (195)
T 3cgg_A          145 IGFGAGR-------------------------------------------GWVFGDFLEVAERVG-LELENAFE  174 (195)
T ss_dssp             EEEETTS-------------------------------------------SCCHHHHHHHHHHHT-EEEEEEES
T ss_pred             EEeCCCC-------------------------------------------CcCHHHHHHHHHHcC-CEEeeeec
Confidence            9874311                                           047889999999999 88877763

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=98.50  E-value=4.1e-06  Score=73.56  Aligned_cols=154  Identities=16%  Similarity=0.106  Sum_probs=86.9

Q ss_pred             ceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhc-Ccccc-----cceeeecCC
Q 044174           30 IIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTS-LPQQR-----EYYSAGVPG  103 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~-l~~~~-----~~f~~~vpg  103 (332)
                      ..+|+|+|||+|..+..+.+.                 .+..+|+--|.-.. .-...+. +....     ..-+.-+-+
T Consensus        30 ~~~vLDiGcG~G~~~~~l~~~-----------------~~~~~v~gvD~s~~-~~~~a~~~~~~~~~~~~~~~~v~~~~~   91 (219)
T 3jwg_A           30 AKKVIDLGCGEGNLLSLLLKD-----------------KSFEQITGVDVSYS-VLERAKDRLKIDRLPEMQRKRISLFQS   91 (219)
T ss_dssp             CCEEEEETCTTCHHHHHHHTS-----------------TTCCEEEEEESCHH-HHHHHHHHHTGGGSCHHHHTTEEEEEC
T ss_pred             CCEEEEecCCCCHHHHHHHhc-----------------CCCCEEEEEECCHH-HHHHHHHHHHhhccccccCcceEEEeC
Confidence            469999999999988776421                 12245555554321 1111111 11100     001222334


Q ss_pred             ccccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 044174          104 SFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGG  183 (332)
Q Consensus       104 SFy~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG  183 (332)
                      ++....++.+++|+|+++.++||+..                                    .++..+|+.-++-|+|||
T Consensus        92 d~~~~~~~~~~fD~V~~~~~l~~~~~------------------------------------~~~~~~l~~~~~~LkpgG  135 (219)
T 3jwg_A           92 SLVYRDKRFSGYDAATVIEVIEHLDE------------------------------------NRLQAFEKVLFEFTRPQT  135 (219)
T ss_dssp             CSSSCCGGGTTCSEEEEESCGGGCCH------------------------------------HHHHHHHHHHHTTTCCSE
T ss_pred             cccccccccCCCCEEEEHHHHHhCCH------------------------------------HHHHHHHHHHHHhhCCCE
Confidence            44455567789999999999999732                                    134567777788999999


Q ss_pred             eEEEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHH----HHHHhCCceEEeEEE
Q 044174          184 MMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMV----KLVDKNGHFSIKTVE  259 (332)
Q Consensus       184 ~mvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~----~~ie~~G~F~I~~le  259 (332)
                      .++.+....-+.. ...         +.        .+..      ...-..++.+.+|++    .++++.| |+|+...
T Consensus       136 ~~i~~~~~~~~~~-~~~---------~~--------~~~~------~~~~~~~~~~~~~l~~~~~~l~~~~G-f~v~~~~  190 (219)
T 3jwg_A          136 VIVSTPNKEYNFH-YGN---------LF--------EGNL------RHRDHRFEWTRKEFQTWAVKVAEKYG-YSVRFLQ  190 (219)
T ss_dssp             EEEEEEBGGGGGC-CCC---------T-------------------GGGCCTTSBCHHHHHHHHHHHHHHHT-EEEEEEE
T ss_pred             EEEEccchhhhhh-hcc---------cC--------cccc------cccCceeeecHHHHHHHHHHHHHHCC-cEEEEEe
Confidence            6665543221110 000         00        0000      011234556889999    7788899 9987776


Q ss_pred             EeC
Q 044174          260 LTN  262 (332)
Q Consensus       260 ~~~  262 (332)
                      .-+
T Consensus       191 ~g~  193 (219)
T 3jwg_A          191 IGE  193 (219)
T ss_dssp             ESC
T ss_pred             cCC
Confidence            544

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=98.48  E-value=3.8e-07  Score=80.00  Aligned_cols=113  Identities=18%  Similarity=0.206  Sum_probs=74.9

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCcccc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHH  107 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~  107 (332)
                      ....+|+|+|||+|..+..+.                      .+|+..|....            .   +..+.+.+..
T Consensus        66 ~~~~~vLDiG~G~G~~~~~l~----------------------~~v~~~D~s~~------------~---~~~~~~d~~~  108 (215)
T 2zfu_A           66 PASLVVADFGCGDCRLASSIR----------------------NPVHCFDLASL------------D---PRVTVCDMAQ  108 (215)
T ss_dssp             CTTSCEEEETCTTCHHHHHCC----------------------SCEEEEESSCS------------S---TTEEESCTTS
T ss_pred             CCCCeEEEECCcCCHHHHHhh----------------------ccEEEEeCCCC------------C---ceEEEecccc
Confidence            345789999999999876551                      12233333332            0   1112334444


Q ss_pred             CCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEE
Q 044174          108 RLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVI  187 (332)
Q Consensus       108 ~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl  187 (332)
                      ..+|++++|+++++.++||  ..                                     ...+|+.-++-|+|||++++
T Consensus       109 ~~~~~~~fD~v~~~~~l~~--~~-------------------------------------~~~~l~~~~~~L~~gG~l~i  149 (215)
T 2zfu_A          109 VPLEDESVDVAVFCLSLMG--TN-------------------------------------IRDFLEEANRVLKPGGLLKV  149 (215)
T ss_dssp             CSCCTTCEEEEEEESCCCS--SC-------------------------------------HHHHHHHHHHHEEEEEEEEE
T ss_pred             CCCCCCCEeEEEEehhccc--cC-------------------------------------HHHHHHHHHHhCCCCeEEEE
Confidence            4578899999999999996  11                                     12345555677899999999


Q ss_pred             EecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEE
Q 044174          188 IMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVEL  260 (332)
Q Consensus       188 ~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~  260 (332)
                      .....                                           .+++.+++.+.+++.| |++.....
T Consensus       150 ~~~~~-------------------------------------------~~~~~~~~~~~l~~~G-f~~~~~~~  178 (215)
T 2zfu_A          150 AEVSS-------------------------------------------RFEDVRTFLRAVTKLG-FKIVSKDL  178 (215)
T ss_dssp             EECGG-------------------------------------------GCSCHHHHHHHHHHTT-EEEEEEEC
T ss_pred             EEcCC-------------------------------------------CCCCHHHHHHHHHHCC-CEEEEEec
Confidence            75321                                           0128999999999999 98877653

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=98.47  E-value=3.5e-06  Score=70.90  Aligned_cols=134  Identities=10%  Similarity=0.068  Sum_probs=82.3

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCcccc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHH  107 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~  107 (332)
                      .+..+|+|+|||+|..+..+.+..                  . +|+.-|.-. +.....+..  ..++  ..+-++   
T Consensus        16 ~~~~~vLDiG~G~G~~~~~l~~~~------------------~-~v~~vD~s~-~~~~~a~~~--~~~v--~~~~~d---   68 (170)
T 3i9f_A           16 GKKGVIVDYGCGNGFYCKYLLEFA------------------T-KLYCIDINV-IALKEVKEK--FDSV--ITLSDP---   68 (170)
T ss_dssp             SCCEEEEEETCTTCTTHHHHHTTE------------------E-EEEEECSCH-HHHHHHHHH--CTTS--EEESSG---
T ss_pred             CCCCeEEEECCCCCHHHHHHHhhc------------------C-eEEEEeCCH-HHHHHHHHh--CCCc--EEEeCC---
Confidence            446899999999999997764321                  1 334444321 111111111  0111  112222   


Q ss_pred             CCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEE
Q 044174          108 RLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVI  187 (332)
Q Consensus       108 ~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl  187 (332)
                      .-+|++++|+++++.++||+..                                      ...+|+.-.+-|+|||++++
T Consensus        69 ~~~~~~~~D~v~~~~~l~~~~~--------------------------------------~~~~l~~~~~~L~pgG~l~~  110 (170)
T 3i9f_A           69 KEIPDNSVDFILFANSFHDMDD--------------------------------------KQHVISEVKRILKDDGRVII  110 (170)
T ss_dssp             GGSCTTCEEEEEEESCSTTCSC--------------------------------------HHHHHHHHHHHEEEEEEEEE
T ss_pred             CCCCCCceEEEEEccchhcccC--------------------------------------HHHHHHHHHHhcCCCCEEEE
Confidence            4468899999999999999732                                      12355556678899999999


Q ss_pred             EecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEeC
Q 044174          188 IMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELTN  262 (332)
Q Consensus       188 ~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~  262 (332)
                      ......+.....                                 ......+.+|++.+++  | |++.+...+.
T Consensus       111 ~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~l~--G-f~~~~~~~~~  149 (170)
T 3i9f_A          111 IDWRKENTGIGP---------------------------------PLSIRMDEKDYMGWFS--N-FVVEKRFNPT  149 (170)
T ss_dssp             EEECSSCCSSSS---------------------------------CGGGCCCHHHHHHHTT--T-EEEEEEECSS
T ss_pred             EEcCccccccCc---------------------------------hHhhhcCHHHHHHHHh--C-cEEEEccCCC
Confidence            976654321100                                 0123358999999999  8 9988877554

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=98.46  E-value=2.4e-06  Score=81.37  Aligned_cols=158  Identities=11%  Similarity=0.112  Sum_probs=97.6

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcC-ccc-ccceeeecCCcc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSL-PQQ-REYYSAGVPGSF  105 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l-~~~-~~~f~~~vpgSF  105 (332)
                      ++..+|+|+|||+|..+..+.+.                 .|..+++.-|+|  ......+.. ... .+--+..+.|+|
T Consensus       189 ~~~~~vLDvG~G~G~~~~~l~~~-----------------~p~~~~~~~D~~--~~~~~a~~~~~~~~~~~~v~~~~~d~  249 (359)
T 1x19_A          189 DGVKKMIDVGGGIGDISAAMLKH-----------------FPELDSTILNLP--GAIDLVNENAAEKGVADRMRGIAVDI  249 (359)
T ss_dssp             TTCCEEEEESCTTCHHHHHHHHH-----------------CTTCEEEEEECG--GGHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred             CCCCEEEEECCcccHHHHHHHHH-----------------CCCCeEEEEecH--HHHHHHHHHHHhcCCCCCEEEEeCcc
Confidence            44679999999999988776442                 135677788883  333333321 111 011245577888


Q ss_pred             ccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeE
Q 044174          106 HHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMM  185 (332)
Q Consensus       106 y~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~m  185 (332)
                      ....+|+.  |+++++..+|.++.                                    .+...+|+.-++-|+|||++
T Consensus       250 ~~~~~~~~--D~v~~~~vlh~~~d------------------------------------~~~~~~l~~~~~~L~pgG~l  291 (359)
T 1x19_A          250 YKESYPEA--DAVLFCRILYSANE------------------------------------QLSTIMCKKAFDAMRSGGRL  291 (359)
T ss_dssp             TTSCCCCC--SEEEEESCGGGSCH------------------------------------HHHHHHHHHHHTTCCTTCEE
T ss_pred             ccCCCCCC--CEEEEechhccCCH------------------------------------HHHHHHHHHHHHhcCCCCEE
Confidence            87777766  99999999984321                                    23456777778899999999


Q ss_pred             EEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEe
Q 044174          186 VIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELT  261 (332)
Q Consensus       186 vl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~  261 (332)
                      ++.-...++..  .. .    +..+   + .|...       ...-.....+++.+|+++++++.| |++.++..+
T Consensus       292 ~i~e~~~~~~~--~~-~----~~~~---~-~~~~~-------~~~g~~~~~~~t~~e~~~ll~~aG-f~~v~~~~~  348 (359)
T 1x19_A          292 LILDMVIDDPE--NP-N----FDYL---S-HYILG-------AGMPFSVLGFKEQARYKEILESLG-YKDVTMVRK  348 (359)
T ss_dssp             EEEEECCCCTT--SC-C----HHHH---H-HHGGG-------GGSSCCCCCCCCGGGHHHHHHHHT-CEEEEEEEE
T ss_pred             EEEecccCCCC--Cc-h----HHHH---H-HHHHh-------cCCCCcccCCCCHHHHHHHHHHCC-CceEEEEec
Confidence            77655443321  00 1    1111   1 22110       000111234589999999999999 998777654

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=98.45  E-value=1.3e-06  Score=74.93  Aligned_cols=138  Identities=14%  Similarity=0.143  Sum_probs=77.6

Q ss_pred             ceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccc-eeeecCCccccC
Q 044174           30 IIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREY-YSAGVPGSFHHR  108 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~-f~~~vpgSFy~~  108 (332)
                      .-+|+|+|||+|..+..+.+.                   ..+|+..|.-.. .-...+........ -+..+.+.+...
T Consensus        33 ~~~vLdiG~G~G~~~~~l~~~-------------------~~~v~~vD~s~~-~~~~a~~~~~~~~~~~~~~~~~d~~~~   92 (199)
T 2xvm_A           33 PGKTLDLGCGNGRNSLYLAAN-------------------GYDVDAWDKNAM-SIANVERIKSIENLDNLHTRVVDLNNL   92 (199)
T ss_dssp             SCEEEEETCTTSHHHHHHHHT-------------------TCEEEEEESCHH-HHHHHHHHHHHHTCTTEEEEECCGGGC
T ss_pred             CCeEEEEcCCCCHHHHHHHHC-------------------CCeEEEEECCHH-HHHHHHHHHHhCCCCCcEEEEcchhhC
Confidence            459999999999998877532                   012233332111 01111110000000 022233344443


Q ss_pred             CcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEE
Q 044174          109 LFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVII  188 (332)
Q Consensus       109 lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~  188 (332)
                      .+ ++++|+++++.++||+..                                    .|+..+|+.-.+-|+|||++++.
T Consensus        93 ~~-~~~~D~v~~~~~l~~~~~------------------------------------~~~~~~l~~~~~~L~~gG~l~~~  135 (199)
T 2xvm_A           93 TF-DRQYDFILSTVVLMFLEA------------------------------------KTIPGLIANMQRCTKPGGYNLIV  135 (199)
T ss_dssp             CC-CCCEEEEEEESCGGGSCG------------------------------------GGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             CC-CCCceEEEEcchhhhCCH------------------------------------HHHHHHHHHHHHhcCCCeEEEEE
Confidence            34 789999999999999742                                    12334667777889999998776


Q ss_pred             ecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEE
Q 044174          189 MPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVE  259 (332)
Q Consensus       189 ~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le  259 (332)
                      ........+      .                +          ....+..+.+|+++.++.   |++...+
T Consensus       136 ~~~~~~~~~------~----------------~----------~~~~~~~~~~~l~~~~~~---f~~~~~~  171 (199)
T 2xvm_A          136 AAMDTADYP------C----------------T----------VGFPFAFKEGELRRYYEG---WERVKYN  171 (199)
T ss_dssp             EEBCCSSSC------C----------------C----------SCCSCCBCTTHHHHHTTT---SEEEEEE
T ss_pred             EeeccCCcC------C----------------C----------CCCCCccCHHHHHHHhcC---CeEEEec
Confidence            443221110      0                0          012245688999999875   8887776

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=98.44  E-value=1.5e-06  Score=73.91  Aligned_cols=117  Identities=12%  Similarity=0.088  Sum_probs=75.7

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCcccc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHH  107 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~  107 (332)
                      ...-+|+|+||+...  +-+-...++..+++...        .+.+...|.                           .+
T Consensus        11 ~~g~~vL~~~~g~v~--vD~s~~ml~~a~~~~~~--------~~~~~~~d~---------------------------~~   53 (176)
T 2ld4_A           11 SAGQFVAVVWDKSSP--VEALKGLVDKLQALTGN--------EGRVSVENI---------------------------KQ   53 (176)
T ss_dssp             CTTSEEEEEECTTSC--HHHHHHHHHHHHHHTTT--------TSEEEEEEG---------------------------GG
T ss_pred             CCCCEEEEecCCcee--eeCCHHHHHHHHHhccc--------CcEEEEech---------------------------hc
Confidence            445799999998743  55556666666554211        133333322                           11


Q ss_pred             CC---cCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCe
Q 044174          108 RL---FPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGM  184 (332)
Q Consensus       108 ~l---fP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~  184 (332)
                      -.   +|++++|+++|+.++||+...+                                     ..+|+.-++-|||||+
T Consensus        54 ~~~~~~~~~~fD~V~~~~~l~~~~~~~-------------------------------------~~~l~~~~r~LkpgG~   96 (176)
T 2ld4_A           54 LLQSAHKESSFDIILSGLVPGSTTLHS-------------------------------------AEILAEIARILRPGGC   96 (176)
T ss_dssp             GGGGCCCSSCEEEEEECCSTTCCCCCC-------------------------------------HHHHHHHHHHEEEEEE
T ss_pred             CccccCCCCCEeEEEECChhhhcccCH-------------------------------------HHHHHHHHHHCCCCEE
Confidence            12   3789999999999999972211                                     1356666788999999


Q ss_pred             EEEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEe
Q 044174          185 MVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIK  256 (332)
Q Consensus       185 mvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~  256 (332)
                      +++.-.....        .+                            .+.|.++.+|+.+.+++.| | |+
T Consensus        97 l~~~~~~~~~--------~~----------------------------~~~~~~~~~~~~~~l~~aG-f-i~  130 (176)
T 2ld4_A           97 LFLKEPVETA--------VD----------------------------NNSKVKTASKLCSALTLSG-L-VE  130 (176)
T ss_dssp             EEEEEEEESS--------SC----------------------------SSSSSCCHHHHHHHHHHTT-C-EE
T ss_pred             EEEEcccccc--------cc----------------------------cccccCCHHHHHHHHHHCC-C-cE
Confidence            9995322110        00                            0566778999999999999 8 76

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=98.42  E-value=1.9e-06  Score=76.48  Aligned_cols=52  Identities=13%  Similarity=0.294  Sum_probs=37.1

Q ss_pred             ccccCCcCCCceeEEEecC-ccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 044174          104 SFHHRLFPQSSIHFAHCSY-ALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSG  182 (332)
Q Consensus       104 SFy~~lfP~~svd~~~S~~-alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pG  182 (332)
                      .+..-.+| +++|+++++. ++||+...                                   .|...+|+.-++-|+||
T Consensus        87 d~~~~~~~-~~fD~v~~~~~~~~~~~~~-----------------------------------~~~~~~l~~~~~~L~pg  130 (243)
T 3d2l_A           87 DMRELELP-EPVDAITILCDSLNYLQTE-----------------------------------ADVKQTFDSAARLLTDG  130 (243)
T ss_dssp             CGGGCCCS-SCEEEEEECTTGGGGCCSH-----------------------------------HHHHHHHHHHHHHEEEE
T ss_pred             ChhhcCCC-CCcCEEEEeCCchhhcCCH-----------------------------------HHHHHHHHHHHHhcCCC
Confidence            33333344 7899999987 99996421                                   24456677777889999


Q ss_pred             CeEEEEecc
Q 044174          183 GMMVIIMPG  191 (332)
Q Consensus       183 G~mvl~~~g  191 (332)
                      |++++.+..
T Consensus       131 G~l~~~~~~  139 (243)
T 3d2l_A          131 GKLLFDVHS  139 (243)
T ss_dssp             EEEEEEEEC
T ss_pred             eEEEEEcCC
Confidence            999998754

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=98.42  E-value=1.1e-06  Score=79.01  Aligned_cols=97  Identities=11%  Similarity=0.113  Sum_probs=65.4

Q ss_pred             cCCccccC-CcCC---CceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 044174          101 VPGSFHHR-LFPQ---SSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARA  176 (332)
Q Consensus       101 vpgSFy~~-lfP~---~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra  176 (332)
                      +.+.+.+. .+|+   +++|+|+|+.++|++....                                  .|...+|+.-+
T Consensus       140 ~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~----------------------------------~~~~~~l~~~~  185 (265)
T 2i62_A          140 LKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDL----------------------------------PAYRTALRNLG  185 (265)
T ss_dssp             EECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSH----------------------------------HHHHHHHHHHH
T ss_pred             EEeeeccCCCCCccccCCccEEEEhhhhhhhcCCh----------------------------------HHHHHHHHHHH
Confidence            34444443 2355   8999999999999754311                                  24556777777


Q ss_pred             HhhccCCeEEEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEe
Q 044174          177 EEIVSGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIK  256 (332)
Q Consensus       177 ~EL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~  256 (332)
                      +-|+|||++++......+  .+                    ..|        ....+.+..+.+++.+++++.| |++.
T Consensus       186 ~~LkpgG~li~~~~~~~~--~~--------------------~~~--------~~~~~~~~~~~~~~~~~l~~aG-f~~~  234 (265)
T 2i62_A          186 SLLKPGGFLVMVDALKSS--YY--------------------MIG--------EQKFSSLPLGWETVRDAVEEAG-YTIE  234 (265)
T ss_dssp             TTEEEEEEEEEEEESSCC--EE--------------------EET--------TEEEECCCCCHHHHHHHHHHTT-CEEE
T ss_pred             hhCCCCcEEEEEecCCCc--eE--------------------EcC--------CccccccccCHHHHHHHHHHCC-CEEE
Confidence            899999999998743211  00                    001        1112345668999999999999 9999


Q ss_pred             EEEEeC
Q 044174          257 TVELTN  262 (332)
Q Consensus       257 ~le~~~  262 (332)
                      .++...
T Consensus       235 ~~~~~~  240 (265)
T 2i62_A          235 QFEVIS  240 (265)
T ss_dssp             EEEEEC
T ss_pred             EEEEec
Confidence            988764

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.41  E-value=1.8e-06  Score=82.42  Aligned_cols=151  Identities=19%  Similarity=0.172  Sum_probs=92.3

Q ss_pred             ceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCccccCC
Q 044174           30 IIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHRL  109 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~~l  109 (332)
                      ..+|+|+|||+|..+..+++.                 .|...++.-|+|  ..-...+.+   .+  +..+.|+|+. -
T Consensus       194 ~~~vlDvG~G~G~~~~~l~~~-----------------~p~~~~~~~D~~--~~~~~a~~~---~~--v~~~~~d~~~-~  248 (358)
T 1zg3_A          194 LESLVDVGGGTGGVTKLIHEI-----------------FPHLKCTVFDQP--QVVGNLTGN---EN--LNFVGGDMFK-S  248 (358)
T ss_dssp             CSEEEEETCTTSHHHHHHHHH-----------------CTTSEEEEEECH--HHHSSCCCC---SS--EEEEECCTTT-C
T ss_pred             CCEEEEECCCcCHHHHHHHHH-----------------CCCCeEEEeccH--HHHhhcccC---CC--cEEEeCccCC-C
Confidence            469999999999988776431                 134566666874  333222221   22  5567889988 5


Q ss_pred             cCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcc---CCeEE
Q 044174          110 FPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVS---GGMMV  186 (332)
Q Consensus       110 fP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~p---GG~mv  186 (332)
                      +|  ++|+++++..||+++.                                    .+...+|+.-.+-|+|   ||+++
T Consensus       249 ~~--~~D~v~~~~vlh~~~d------------------------------------~~~~~~l~~~~~~L~p~~~gG~l~  290 (358)
T 1zg3_A          249 IP--SADAVLLKWVLHDWND------------------------------------EQSLKILKNSKEAISHKGKDGKVI  290 (358)
T ss_dssp             CC--CCSEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHHTGGGGGGCEEE
T ss_pred             CC--CceEEEEcccccCCCH------------------------------------HHHHHHHHHHHHhCCCCCCCcEEE
Confidence            67  4999999999997432                                    1223567777788999   99999


Q ss_pred             EEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEe
Q 044174          187 IIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELT  261 (332)
Q Consensus       187 l~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~  261 (332)
                      +.-...++...      ...+.. ...+.++.--..        .  ....++.+|+++++++.| |++.++...
T Consensus       291 i~e~~~~~~~~------~~~~~~-~~~~~d~~~~~~--------~--~g~~~t~~e~~~ll~~aG-f~~~~~~~~  347 (358)
T 1zg3_A          291 IIDISIDETSD------DRGLTE-LQLDYDLVMLTM--------F--LGKERTKQEWEKLIYDAG-FSSYKITPI  347 (358)
T ss_dssp             EEECEECTTCS------CHHHHH-HHHHHHHHHHHH--------H--SCCCEEHHHHHHHHHHTT-CCEEEEEEE
T ss_pred             EEEeccCCCCc------cchhhh-HHHhhCHHHhcc--------C--CCCCCCHHHHHHHHHHcC-CCeeEEEec
Confidence            87544333211      000000 111122110000        0  013469999999999999 988776643

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=98.41  E-value=1.6e-06  Score=84.24  Aligned_cols=146  Identities=10%  Similarity=0.165  Sum_probs=88.7

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcC--cccccceeeecCCcc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSL--PQQREYYSAGVPGSF  105 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l--~~~~~~f~~~vpgSF  105 (332)
                      ....+|+|+|||+|..+..+.+.            +       .+|+--|.-.+ .-...+..  +.....|..   +..
T Consensus       106 ~~~~~VLDiGcG~G~~~~~l~~~------------g-------~~v~gvD~s~~-~~~~a~~~~~~~~~~~~~~---~~~  162 (416)
T 4e2x_A          106 GPDPFIVEIGCNDGIMLRTIQEA------------G-------VRHLGFEPSSG-VAAKAREKGIRVRTDFFEK---ATA  162 (416)
T ss_dssp             SSSCEEEEETCTTTTTHHHHHHT------------T-------CEEEEECCCHH-HHHHHHTTTCCEECSCCSH---HHH
T ss_pred             CCCCEEEEecCCCCHHHHHHHHc------------C-------CcEEEECCCHH-HHHHHHHcCCCcceeeech---hhH
Confidence            44679999999999987766431            1       24555554321 22222221  000011111   111


Q ss_pred             ccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeE
Q 044174          106 HHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMM  185 (332)
Q Consensus       106 y~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~m  185 (332)
                      ....+|++++|+++|+.++||+..                                      ...||+.-++-|+|||+|
T Consensus       163 ~~l~~~~~~fD~I~~~~vl~h~~d--------------------------------------~~~~l~~~~r~LkpgG~l  204 (416)
T 4e2x_A          163 DDVRRTEGPANVIYAANTLCHIPY--------------------------------------VQSVLEGVDALLAPDGVF  204 (416)
T ss_dssp             HHHHHHHCCEEEEEEESCGGGCTT--------------------------------------HHHHHHHHHHHEEEEEEE
T ss_pred             hhcccCCCCEEEEEECChHHhcCC--------------------------------------HHHHHHHHHHHcCCCeEE
Confidence            112356899999999999999742                                      234677777889999999


Q ss_pred             EEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcc-cCcCcccCCHHHHHHHHHhCCceEEeEEEEeC
Q 044174          186 VIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDS-FNLPIYSASSEEMVKLVDKNGHFSIKTVELTN  262 (332)
Q Consensus       186 vl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~-fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~  262 (332)
                      ++......+              .    +.    .     ...+. +.-.+++.|.++++.++++.| |++..++.+.
T Consensus       205 ~i~~~~~~~--------------~----~~----~-----~~~~~~~~~~~~~~s~~~l~~ll~~aG-f~~~~~~~~~  254 (416)
T 4e2x_A          205 VFEDPYLGD--------------I----VA----K-----TSFDQIFDEHFFLFSATSVQGMAQRCG-FELVDVQRLP  254 (416)
T ss_dssp             EEEEECHHH--------------H----HH----H-----TCGGGCSTTCCEECCHHHHHHHHHHTT-EEEEEEEEEC
T ss_pred             EEEeCChHH--------------h----hh----h-----cchhhhhhhhhhcCCHHHHHHHHHHcC-CEEEEEEEcc
Confidence            998654211              1    11    0     11121 123456789999999999999 9999988764

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=98.40  E-value=3.9e-06  Score=73.16  Aligned_cols=136  Identities=14%  Similarity=0.081  Sum_probs=78.1

Q ss_pred             CceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCccccC
Q 044174           29 NIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHR  108 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~~  108 (332)
                      ...+|+|+|||+|..+..+          .+         .  +++..|.-.. .-...+...  .+  +..+-+.+..-
T Consensus        36 ~~~~vLdiG~G~G~~~~~l----------~~---------~--~v~~vD~s~~-~~~~a~~~~--~~--~~~~~~d~~~~   89 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL----------PY---------P--QKVGVEPSEA-MLAVGRRRA--PE--ATWVRAWGEAL   89 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC----------CC---------S--EEEEECCCHH-HHHHHHHHC--TT--SEEECCCTTSC
T ss_pred             CCCeEEEECCCCCHhHHhC----------CC---------C--eEEEEeCCHH-HHHHHHHhC--CC--cEEEEcccccC
Confidence            4579999999999877654          00         0  3333443211 111111111  01  11233444455


Q ss_pred             CcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEE
Q 044174          109 LFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVII  188 (332)
Q Consensus       109 lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~  188 (332)
                      .+|++++|+++++.++||+.. |                                     ..+|+.-.+-|+|||++++.
T Consensus        90 ~~~~~~fD~v~~~~~l~~~~~-~-------------------------------------~~~l~~~~~~L~pgG~l~i~  131 (211)
T 2gs9_A           90 PFPGESFDVVLLFTTLEFVED-V-------------------------------------ERVLLEARRVLRPGGALVVG  131 (211)
T ss_dssp             CSCSSCEEEEEEESCTTTCSC-H-------------------------------------HHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCCCcEEEEEEcChhhhcCC-H-------------------------------------HHHHHHHHHHcCCCCEEEEE
Confidence            578899999999999999752 1                                     13555666788999999999


Q ss_pred             ecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCC
Q 044174          189 MPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNG  251 (332)
Q Consensus       189 ~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G  251 (332)
                      .....+           .|...   +..+...|.       .......+.|.+|++++++  |
T Consensus       132 ~~~~~~-----------~~~~~---~~~~~~~~~-------~~~~~~~~~s~~~l~~~l~--G  171 (211)
T 2gs9_A          132 VLEALS-----------PWAAL---YRRLGEKGV-------LPWAQARFLAREDLKALLG--P  171 (211)
T ss_dssp             EECTTS-----------HHHHH---HHHHHHTTC-------TTGGGCCCCCHHHHHHHHC--S
T ss_pred             ecCCcC-----------cHHHH---HHHHhhccC-------ccccccccCCHHHHHHHhc--C
Confidence            876432           12111   111111221       1111235679999999999  7

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=98.39  E-value=2.1e-06  Score=76.73  Aligned_cols=152  Identities=14%  Similarity=0.069  Sum_probs=84.5

Q ss_pred             CCceEEEeecCCCCcchHHHHHH------------HHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCccccc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQD------------VLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQRE   95 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~------------ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~   95 (332)
                      ....+|+|+|||+|.++..+.+.            .++..+++.       ....+.+...|+-.-++..-|.       
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~~~~d~~~~~~~~~~~-------  120 (245)
T 3ggd_A           55 NPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKEN-------TAANISYRLLDGLVPEQAAQIH-------  120 (245)
T ss_dssp             CTTSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHHHHS-------CCTTEEEEECCTTCHHHHHHHH-------
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHHHHHHhC-------cccCceEEECcccccccccccc-------
Confidence            44578999999999999988743            222222221       1123555555554433222110       


Q ss_pred             ceeeecCCccccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHH
Q 044174           96 YYSAGVPGSFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNAR  175 (332)
Q Consensus        96 ~f~~~vpgSFy~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~R  175 (332)
                                     ...++|+++++.++||+..                                    .|...+|+.-
T Consensus       121 ---------------~~~~~d~v~~~~~~~~~~~------------------------------------~~~~~~l~~~  149 (245)
T 3ggd_A          121 ---------------SEIGDANIYMRTGFHHIPV------------------------------------EKRELLGQSL  149 (245)
T ss_dssp             ---------------HHHCSCEEEEESSSTTSCG------------------------------------GGHHHHHHHH
T ss_pred             ---------------cccCccEEEEcchhhcCCH------------------------------------HHHHHHHHHH
Confidence                           1124899999999999743                                    1233466666


Q ss_pred             HHhhccCCeEEEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccc--hhhhcccCcCcccCCHHHHHHHHHhCCce
Q 044174          176 AEEIVSGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLIT--EAELDSFNLPIYSASSEEMVKLVDKNGHF  253 (332)
Q Consensus       176 a~EL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~--~e~~d~fn~P~y~ps~~E~~~~ie~~G~F  253 (332)
                      .+-|+|||++++.-.+..+         +..+..+....     .|.-.  ...+.....|. ..+.+|+++.+  .| |
T Consensus       150 ~~~LkpgG~l~i~~~~~~~---------~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--aG-f  211 (245)
T 3ggd_A          150 RILLGKQGAMYLIELGTGC---------IDFFNSLLEKY-----GQLPYELLLVMEHGIRPG-IFTAEDIELYF--PD-F  211 (245)
T ss_dssp             HHHHTTTCEEEEEEECTTH---------HHHHHHHHHHH-----SSCCHHHHHHHTTTCCCC-CCCHHHHHHHC--TT-E
T ss_pred             HHHcCCCCEEEEEeCCccc---------cHHHHHHHhCC-----CCCchhhhhccccCCCCC-ccCHHHHHHHh--CC-C
Confidence            6788899998887665432         11111111110     01100  00111122343 35899999999  89 9


Q ss_pred             EEeEEEEeC
Q 044174          254 SIKTVELTN  262 (332)
Q Consensus       254 ~I~~le~~~  262 (332)
                      ++..-....
T Consensus       212 ~~~~~~~~~  220 (245)
T 3ggd_A          212 EILSQGEGL  220 (245)
T ss_dssp             EEEEEECCB
T ss_pred             EEEeccccc
Confidence            987766543

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=98.38  E-value=6e-06  Score=76.33  Aligned_cols=86  Identities=14%  Similarity=0.086  Sum_probs=57.2

Q ss_pred             cCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEe
Q 044174          110 FPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIM  189 (332)
Q Consensus       110 fP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~~  189 (332)
                      +|-+++|+++++.+|||++..                                    +...+|+.=++-|+|||+|++..
T Consensus       153 ~d~~~~d~v~~~~vlh~~~d~------------------------------------~~~~~l~~~~~~L~pGG~l~i~~  196 (274)
T 2qe6_A          153 IDFSRPAAIMLVGMLHYLSPD------------------------------------VVDRVVGAYRDALAPGSYLFMTS  196 (274)
T ss_dssp             CCTTSCCEEEETTTGGGSCTT------------------------------------THHHHHHHHHHHSCTTCEEEEEE
T ss_pred             CCCCCCEEEEEechhhhCCcH------------------------------------HHHHHHHHHHHhCCCCcEEEEEE
Confidence            555689999999999998652                                    12235666667899999999998


Q ss_pred             cccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeE
Q 044174          190 PGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKT  257 (332)
Q Consensus       190 ~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~  257 (332)
                      ...+.  +  .     .++.+...+.   ..|           .|+++++.+|+++.+  .| |++..
T Consensus       197 ~~~~~--~--~-----~~~~~~~~~~---~~~-----------~~~~~~s~~ei~~~l--~G-~~l~~  238 (274)
T 2qe6_A          197 LVDTG--L--P-----AQQKLARITR---ENL-----------GEGWARTPEEIERQF--GD-FELVE  238 (274)
T ss_dssp             EBCSS--C--H-----HHHHHHHHHH---HHH-----------SCCCCBCHHHHHHTT--TT-CEECT
T ss_pred             ecCcc--h--H-----HHHHHHHHHH---hcC-----------CCCccCCHHHHHHHh--CC-CeEcc
Confidence            76532  1  0     0111111111   111           377889999999999  48 87755

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=98.38  E-value=3.6e-06  Score=73.62  Aligned_cols=106  Identities=11%  Similarity=0.093  Sum_probs=63.4

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhc-CcccccceeeecCCccc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTS-LPQQREYYSAGVPGSFH  106 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~-l~~~~~~f~~~vpgSFy  106 (332)
                      ....+|+|+|||+|..+..+.+..                   .+|+--|.-.. .-...+. +....  -+..+-+++.
T Consensus        50 ~~~~~vLDiGcG~G~~~~~l~~~~-------------------~~v~~vD~s~~-~~~~a~~~~~~~~--~~~~~~~d~~  107 (216)
T 3ofk_A           50 GAVSNGLEIGCAAGAFTEKLAPHC-------------------KRLTVIDVMPR-AIGRACQRTKRWS--HISWAATDIL  107 (216)
T ss_dssp             SSEEEEEEECCTTSHHHHHHGGGE-------------------EEEEEEESCHH-HHHHHHHHTTTCS--SEEEEECCTT
T ss_pred             CCCCcEEEEcCCCCHHHHHHHHcC-------------------CEEEEEECCHH-HHHHHHHhcccCC--CeEEEEcchh
Confidence            456899999999999988774320                   12233332111 1111111 11110  1122233333


Q ss_pred             cCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEE
Q 044174          107 HRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMV  186 (332)
Q Consensus       107 ~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mv  186 (332)
                      .-. |++++|+++++.++||+...                                   .++..+|+.-++-|+|||+++
T Consensus       108 ~~~-~~~~fD~v~~~~~l~~~~~~-----------------------------------~~~~~~l~~~~~~L~pgG~l~  151 (216)
T 3ofk_A          108 QFS-TAELFDLIVVAEVLYYLEDM-----------------------------------TQMRTAIDNMVKMLAPGGHLV  151 (216)
T ss_dssp             TCC-CSCCEEEEEEESCGGGSSSH-----------------------------------HHHHHHHHHHHHTEEEEEEEE
T ss_pred             hCC-CCCCccEEEEccHHHhCCCH-----------------------------------HHHHHHHHHHHHHcCCCCEEE
Confidence            333 78899999999999997641                                   134456777778999999999


Q ss_pred             EEecc
Q 044174          187 IIMPG  191 (332)
Q Consensus       187 l~~~g  191 (332)
                      +....
T Consensus       152 ~~~~~  156 (216)
T 3ofk_A          152 FGSAR  156 (216)
T ss_dssp             EEEEC
T ss_pred             EEecC
Confidence            97754

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.37  E-value=1.4e-05  Score=70.04  Aligned_cols=107  Identities=12%  Similarity=0.153  Sum_probs=61.9

Q ss_pred             ceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCccccCC
Q 044174           30 IIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHRL  109 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~~l  109 (332)
                      ..+|+|+|||+|..+..+...                 .+  +++..|.-. +.....+........-+..+.+++....
T Consensus        39 ~~~vLDlG~G~G~~~~~l~~~-----------------~~--~v~~vD~s~-~~~~~a~~~~~~~~~~~~~~~~d~~~~~   98 (227)
T 1ve3_A           39 RGKVLDLACGVGGFSFLLEDY-----------------GF--EVVGVDISE-DMIRKAREYAKSRESNVEFIVGDARKLS   98 (227)
T ss_dssp             CCEEEEETCTTSHHHHHHHHT-----------------TC--EEEEEESCH-HHHHHHHHHHHHTTCCCEEEECCTTSCC
T ss_pred             CCeEEEEeccCCHHHHHHHHc-----------------CC--EEEEEECCH-HHHHHHHHHHHhcCCCceEEECchhcCC
Confidence            679999999999888766431                 01  333344321 1111111110000011222344555545


Q ss_pred             cCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEe
Q 044174          110 FPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIM  189 (332)
Q Consensus       110 fP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~~  189 (332)
                      +|++++|+++|+.++|+...                                    .|...+|+.-++-|+|||++++..
T Consensus        99 ~~~~~~D~v~~~~~~~~~~~------------------------------------~~~~~~l~~~~~~L~~gG~l~~~~  142 (227)
T 1ve3_A           99 FEDKTFDYVIFIDSIVHFEP------------------------------------LELNQVFKEVRRVLKPSGKFIMYF  142 (227)
T ss_dssp             SCTTCEEEEEEESCGGGCCH------------------------------------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCcEEEEEEcCchHhCCH------------------------------------HHHHHHHHHHHHHcCCCcEEEEEe
Confidence            67889999999988554211                                    234456777778899999999987


Q ss_pred             ccc
Q 044174          190 PGI  192 (332)
Q Consensus       190 ~gr  192 (332)
                      ...
T Consensus       143 ~~~  145 (227)
T 1ve3_A          143 TDL  145 (227)
T ss_dssp             ECH
T ss_pred             cCh
Confidence            653

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=98.37  E-value=3.1e-06  Score=77.58  Aligned_cols=139  Identities=13%  Similarity=0.192  Sum_probs=81.1

Q ss_pred             CceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCccccC
Q 044174           29 NIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHR  108 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~~  108 (332)
                      ...+|+|+|||+|..++.+...            +       .+|...|.-..- -...+........-+..+.+++..-
T Consensus       120 ~~~~vLD~GcG~G~~~~~l~~~------------g-------~~v~~vD~s~~~-~~~a~~~~~~~~~~~~~~~~d~~~~  179 (286)
T 3m70_A          120 SPCKVLDLGCGQGRNSLYLSLL------------G-------YDVTSWDHNENS-IAFLNETKEKENLNISTALYDINAA  179 (286)
T ss_dssp             CSCEEEEESCTTCHHHHHHHHT------------T-------CEEEEEESCHHH-HHHHHHHHHHTTCCEEEEECCGGGC
T ss_pred             CCCcEEEECCCCCHHHHHHHHC------------C-------CeEEEEECCHHH-HHHHHHHHHHcCCceEEEEeccccc
Confidence            3579999999999999887532            0       123333332111 1111111000011223344455443


Q ss_pred             CcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEE
Q 044174          109 LFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVII  188 (332)
Q Consensus       109 lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~  188 (332)
                      .+ ++++|+++|+.++||++.                                    .++..+|+.-.+-|+|||++++.
T Consensus       180 ~~-~~~fD~i~~~~~~~~~~~------------------------------------~~~~~~l~~~~~~LkpgG~l~i~  222 (286)
T 3m70_A          180 NI-QENYDFIVSTVVFMFLNR------------------------------------ERVPSIIKNMKEHTNVGGYNLIV  222 (286)
T ss_dssp             CC-CSCEEEEEECSSGGGSCG------------------------------------GGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             cc-cCCccEEEEccchhhCCH------------------------------------HHHHHHHHHHHHhcCCCcEEEEE
Confidence            33 789999999999999743                                    12334677777889999998887


Q ss_pred             ecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEE
Q 044174          189 MPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVE  259 (332)
Q Consensus       189 ~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le  259 (332)
                      ........+      .                          -..+.+..+.+|+++.++.   |++...+
T Consensus       223 ~~~~~~~~~------~--------------------------~~~~~~~~~~~~l~~~~~~---~~~~~~~  258 (286)
T 3m70_A          223 AAMSTDDVP------C--------------------------PLPFSFTFAENELKEYYKD---WEFLEYN  258 (286)
T ss_dssp             EEBCCSSSC------C--------------------------SSCCSCCBCTTHHHHHTTT---SEEEEEE
T ss_pred             EecCCCCCC------C--------------------------CCCccccCCHHHHHHHhcC---CEEEEEE
Confidence            654322110      0                          0123466778888888754   8877765

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=98.36  E-value=3.7e-06  Score=79.99  Aligned_cols=151  Identities=17%  Similarity=0.213  Sum_probs=92.5

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCcccc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHH  107 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~  107 (332)
                      ++..+|+|+|||+|..+..+.+        .         .|..++..-|+|  +.-...+..   ..  +..+.|+|+.
T Consensus       187 ~~~~~vlDvG~G~G~~~~~l~~--------~---------~p~~~~~~~D~~--~~~~~a~~~---~~--v~~~~~d~~~  242 (352)
T 1fp2_A          187 DGLESIVDVGGGTGTTAKIICE--------T---------FPKLKCIVFDRP--QVVENLSGS---NN--LTYVGGDMFT  242 (352)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHH--------H---------CTTCEEEEEECH--HHHTTCCCB---TT--EEEEECCTTT
T ss_pred             ccCceEEEeCCCccHHHHHHHH--------H---------CCCCeEEEeeCH--HHHhhcccC---CC--cEEEeccccC
Confidence            3457999999999988766543        1         234677888874  222222221   12  5567788887


Q ss_pred             CCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcc---CCe
Q 044174          108 RLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVS---GGM  184 (332)
Q Consensus       108 ~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~p---GG~  184 (332)
                       -+|+  +|+++++.+||.++.                                    .+...+|+.-++-|+|   ||+
T Consensus       243 -~~p~--~D~v~~~~~lh~~~d------------------------------------~~~~~~l~~~~~~L~p~~~gG~  283 (352)
T 1fp2_A          243 -SIPN--ADAVLLKYILHNWTD------------------------------------KDCLRILKKCKEAVTNDGKRGK  283 (352)
T ss_dssp             -CCCC--CSEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHHHSGGGCCCE
T ss_pred             -CCCC--ccEEEeehhhccCCH------------------------------------HHHHHHHHHHHHhCCCCCCCcE
Confidence             5674  999999999995322                                    1223466667788999   999


Q ss_pred             EEEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEE
Q 044174          185 MVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVEL  260 (332)
Q Consensus       185 mvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~  260 (332)
                      +++.-...++...     ..... . ...+.++.-   .     . +  .-..++.+|+++++++.| |++.++..
T Consensus       284 l~i~e~~~~~~~~-----~~~~~-~-~~~~~d~~~---~-----~-~--~g~~~t~~e~~~ll~~aG-f~~~~~~~  340 (352)
T 1fp2_A          284 VTIIDMVIDKKKD-----ENQVT-Q-IKLLMDVNM---A-----C-L--NGKERNEEEWKKLFIEAG-FQHYKISP  340 (352)
T ss_dssp             EEEEECEECTTTS-----CHHHH-H-HHHHHHHHG---G-----G-G--TCCCEEHHHHHHHHHHTT-CCEEEEEE
T ss_pred             EEEEEeecCCCCC-----ccchh-h-hHhhccHHH---H-----h-c--cCCCCCHHHHHHHHHHCC-CCeeEEEe
Confidence            9988655443211     00000 1 112222210   0     0 1  123468999999999999 98777654

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=98.35  E-value=2.8e-05  Score=71.44  Aligned_cols=108  Identities=17%  Similarity=0.173  Sum_probs=65.7

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCcccc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHH  107 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~  107 (332)
                      .+..+|+|+|||+|..++.+.+.        +        ++..+|+-.|+-.. .-...+......+.-+..+-+.+.+
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~~~--------~--------~~~~~v~gvD~s~~-~~~~a~~~~~~~~~~v~~~~~d~~~   83 (284)
T 3gu3_A           21 TKPVHIVDYGCGYGYLGLVLMPL--------L--------PEGSKYTGIDSGET-LLAEARELFRLLPYDSEFLEGDATE   83 (284)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTT--------S--------CTTCEEEEEESCHH-HHHHHHHHHHSSSSEEEEEESCTTT
T ss_pred             CCCCeEEEecCCCCHHHHHHHHh--------C--------CCCCEEEEEECCHH-HHHHHHHHHHhcCCceEEEEcchhh
Confidence            45689999999999888765321        0        11256666665321 1111111111111123334455555


Q ss_pred             CCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEE
Q 044174          108 RLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVI  187 (332)
Q Consensus       108 ~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl  187 (332)
                      -.+ ++++|+++++.++|++..                                      +..+|+.-.+-|+|||++++
T Consensus        84 ~~~-~~~fD~v~~~~~l~~~~~--------------------------------------~~~~l~~~~~~LkpgG~l~~  124 (284)
T 3gu3_A           84 IEL-NDKYDIAICHAFLLHMTT--------------------------------------PETMLQKMIHSVKKGGKIIC  124 (284)
T ss_dssp             CCC-SSCEEEEEEESCGGGCSS--------------------------------------HHHHHHHHHHTEEEEEEEEE
T ss_pred             cCc-CCCeeEEEECChhhcCCC--------------------------------------HHHHHHHHHHHcCCCCEEEE
Confidence            445 469999999999999643                                      22355666678999999998


Q ss_pred             Eecc
Q 044174          188 IMPG  191 (332)
Q Consensus       188 ~~~g  191 (332)
                      ..+.
T Consensus       125 ~~~~  128 (284)
T 3gu3_A          125 FEPH  128 (284)
T ss_dssp             EECC
T ss_pred             Eecc
Confidence            8765

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=98.34  E-value=8.9e-06  Score=71.87  Aligned_cols=106  Identities=13%  Similarity=0.146  Sum_probs=61.6

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCcccc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHH  107 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~  107 (332)
                      ++..+|+|+|||+|..+..+.+..-                   +|+..|.-. +.-...+...+  +  +..+.+.+..
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~~-------------------~v~~~D~s~-~~~~~a~~~~~--~--~~~~~~d~~~   94 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEFG-------------------DTAGLELSE-DMLTHARKRLP--D--ATLHQGDMRD   94 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHHS-------------------EEEEEESCH-HHHHHHHHHCT--T--CEEEECCTTT
T ss_pred             CCCCeEEEecccCCHHHHHHHHhCC-------------------cEEEEeCCH-HHHHHHHHhCC--C--CEEEECCHHH
Confidence            3457999999999999987764311                   122222211 11111111100  1  1122334433


Q ss_pred             CCcCCCceeEEEe-cCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEE
Q 044174          108 RLFPQSSIHFAHC-SYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMV  186 (332)
Q Consensus       108 ~lfP~~svd~~~S-~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mv  186 (332)
                      ..+ ++++|+++| ..++||+...                                   .|+..+|+.-++-|+|||+++
T Consensus        95 ~~~-~~~~D~v~~~~~~~~~~~~~-----------------------------------~~~~~~l~~~~~~L~pgG~l~  138 (239)
T 3bxo_A           95 FRL-GRKFSAVVSMFSSVGYLKTT-----------------------------------EELGAAVASFAEHLEPGGVVV  138 (239)
T ss_dssp             CCC-SSCEEEEEECTTGGGGCCSH-----------------------------------HHHHHHHHHHHHTEEEEEEEE
T ss_pred             ccc-CCCCcEEEEcCchHhhcCCH-----------------------------------HHHHHHHHHHHHhcCCCeEEE
Confidence            333 678999995 4499996431                                   245567888888999999999


Q ss_pred             EEecccC
Q 044174          187 IIMPGIP  193 (332)
Q Consensus       187 l~~~gr~  193 (332)
                      +......
T Consensus       139 ~~~~~~~  145 (239)
T 3bxo_A          139 VEPWWFP  145 (239)
T ss_dssp             ECCCCCT
T ss_pred             EEeccCc
Confidence            9865443

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=98.34  E-value=2.9e-06  Score=81.92  Aligned_cols=110  Identities=14%  Similarity=0.069  Sum_probs=66.8

Q ss_pred             CceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcc---------cccceee
Q 044174           29 NIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQ---------QREYYSA   99 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~---------~~~~f~~   99 (332)
                      +..+|+|+|||+|..++.+.+..                .|..+|+..|+-. +.-...+....         ...--+.
T Consensus        83 ~~~~VLDlGcG~G~~~~~la~~~----------------~~~~~v~gvD~s~-~~l~~a~~~~~~~~~~~~g~~~~~~v~  145 (383)
T 4fsd_A           83 EGATVLDLGCGTGRDVYLASKLV----------------GEHGKVIGVDMLD-NQLEVARKYVEYHAEKFFGSPSRSNVR  145 (383)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHH----------------TTTCEEEEEECCH-HHHHHHHHTHHHHHHHHHSSTTCCCEE
T ss_pred             CCCEEEEecCccCHHHHHHHHHh----------------CCCCEEEEEECCH-HHHHHHHHHHHHhhhhcccccCCCceE
Confidence            45799999999999988775431                1223455555422 12222221100         0001122


Q ss_pred             ecCCccccC------CcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHH
Q 044174          100 GVPGSFHHR------LFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLN  173 (332)
Q Consensus       100 ~vpgSFy~~------lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~  173 (332)
                      .+.+.+..-      .+|++++|+|+|+.++||+..                                      +..+|+
T Consensus       146 ~~~~d~~~l~~~~~~~~~~~~fD~V~~~~~l~~~~d--------------------------------------~~~~l~  187 (383)
T 4fsd_A          146 FLKGFIENLATAEPEGVPDSSVDIVISNCVCNLSTN--------------------------------------KLALFK  187 (383)
T ss_dssp             EEESCTTCGGGCBSCCCCTTCEEEEEEESCGGGCSC--------------------------------------HHHHHH
T ss_pred             EEEccHHHhhhcccCCCCCCCEEEEEEccchhcCCC--------------------------------------HHHHHH
Confidence            233444433      688999999999999999643                                      124566


Q ss_pred             HHHHhhccCCeEEEEecccC
Q 044174          174 ARAEEIVSGGMMVIIMPGIP  193 (332)
Q Consensus       174 ~Ra~EL~pGG~mvl~~~gr~  193 (332)
                      .-++-|+|||+|++......
T Consensus       188 ~~~r~LkpgG~l~i~~~~~~  207 (383)
T 4fsd_A          188 EIHRVLRDGGELYFSDVYAD  207 (383)
T ss_dssp             HHHHHEEEEEEEEEEEEEES
T ss_pred             HHHHHcCCCCEEEEEEeccc
Confidence            66678999999999866544

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=98.31  E-value=3.9e-06  Score=72.76  Aligned_cols=155  Identities=10%  Similarity=0.058  Sum_probs=83.9

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCcccc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHH  107 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~  107 (332)
                      +...+|+|+|||+|..++.++..                  +..+|+--|.-.. .-...+........-+..+-+++..
T Consensus        22 ~~~~~vLDiGcG~G~~~~~~~~~------------------~~~~v~~vD~s~~-~~~~a~~~~~~~~~~~~~~~~d~~~   82 (209)
T 2p8j_A           22 NLDKTVLDCGAGGDLPPLSIFVE------------------DGYKTYGIEISDL-QLKKAENFSRENNFKLNISKGDIRK   82 (209)
T ss_dssp             SSCSEEEEESCCSSSCTHHHHHH------------------TTCEEEEEECCHH-HHHHHHHHHHHHTCCCCEEECCTTS
T ss_pred             CCCCEEEEECCCCCHHHHHHHHh------------------CCCEEEEEECCHH-HHHHHHHHHHhcCCceEEEECchhh
Confidence            34579999999999987654321                  0123444443211 1111111100000011123334444


Q ss_pred             CCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEE
Q 044174          108 RLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVI  187 (332)
Q Consensus       108 ~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl  187 (332)
                      -.+|++++|+++++.++|+++  +                                  .|...+|+.-++-|+|||++++
T Consensus        83 ~~~~~~~fD~v~~~~~l~~~~--~----------------------------------~~~~~~l~~~~~~LkpgG~l~~  126 (209)
T 2p8j_A           83 LPFKDESMSFVYSYGTIFHMR--K----------------------------------NDVKEAIDEIKRVLKPGGLACI  126 (209)
T ss_dssp             CCSCTTCEEEEEECSCGGGSC--H----------------------------------HHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CCCCCCceeEEEEcChHHhCC--H----------------------------------HHHHHHHHHHHHHcCCCcEEEE
Confidence            457889999999999999863  1                                  2344567777788999999999


Q ss_pred             EecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhc-ccCcCcccCCHHHHHHHHHhCCceEE
Q 044174          188 IMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELD-SFNLPIYSASSEEMVKLVDKNGHFSI  255 (332)
Q Consensus       188 ~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d-~fn~P~y~ps~~E~~~~ie~~G~F~I  255 (332)
                      ......+.........               .+....  ..+ .......+.+.+|++..+++.| |..
T Consensus       127 ~~~~~~~~~~~~~~~~---------------~~~~~~--~~~~~~~~~~~~~~~~e~~~~~~~~g-~~~  177 (209)
T 2p8j_A          127 NFLTTKDERYNKGEKI---------------GEGEFL--QLERGEKVIHSYVSLEEADKYFKDMK-VLF  177 (209)
T ss_dssp             EEEETTSTTTTCSEEE---------------ETTEEE--ECC-CCCEEEEEECHHHHHHTTTTSE-EEE
T ss_pred             EEecccchhccchhhh---------------ccccce--eccCCCceeEEecCHHHHHHHHhhcC-cee
Confidence            9887654321100000               000000  001 1112225778999999999988 443

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=98.29  E-value=2.2e-06  Score=79.54  Aligned_cols=48  Identities=10%  Similarity=0.238  Sum_probs=37.4

Q ss_pred             cCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEe
Q 044174          110 FPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIM  189 (332)
Q Consensus       110 fP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~~  189 (332)
                      ++.+++|+|+|...+||+.-                                .....+...+|+.-++-|+|||+|+++.
T Consensus       173 ~~~~~fD~I~~~~vl~~ihl--------------------------------~~~~~~~~~~l~~~~~~LkpGG~lil~~  220 (292)
T 3g07_A          173 AQTPEYDVVLCLSLTKWVHL--------------------------------NWGDEGLKRMFRRIYRHLRPGGILVLEP  220 (292)
T ss_dssp             TCCCCEEEEEEESCHHHHHH--------------------------------HHHHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             ccCCCcCEEEEChHHHHhhh--------------------------------cCCHHHHHHHHHHHHHHhCCCcEEEEec
Confidence            57899999999999999420                                1123466678888889999999999974

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=98.26  E-value=3.3e-06  Score=74.33  Aligned_cols=166  Identities=13%  Similarity=0.095  Sum_probs=85.6

Q ss_pred             CceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcc--cccceeeecCCccc
Q 044174           29 NIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQ--QREYYSAGVPGSFH  106 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~--~~~~f~~~vpgSFy  106 (332)
                      +..+|+|+|||+|..++.+...                 .|..+|+-.|.-..=-...-+....  ..+  +..+.++..
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~-----------------~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~--v~~~~~d~~  101 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQ-----------------NPDINYIGIDIQKSVLSYALDKVLEVGVPN--IKLLWVDGS  101 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHH-----------------CTTSEEEEEESCHHHHHHHHHHHHHHCCSS--EEEEECCSS
T ss_pred             CCCeEEEEccCcCHHHHHHHHH-----------------CCCCCEEEEEcCHHHHHHHHHHHHHcCCCC--EEEEeCCHH
Confidence            3568999999999999877532                 1223444444321111111111100  011  111222332


Q ss_pred             c--CCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCe
Q 044174          107 H--RLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGM  184 (332)
Q Consensus       107 ~--~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~  184 (332)
                      .  ..+|++++|+++++...+|..+.....           +                   -+...||+.-++-|+|||.
T Consensus       102 ~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~-----------~-------------------~~~~~~l~~~~~~LkpgG~  151 (214)
T 1yzh_A          102 DLTDYFEDGEIDRLYLNFSDPWPKKRHEKR-----------R-------------------LTYKTFLDTFKRILPENGE  151 (214)
T ss_dssp             CGGGTSCTTCCSEEEEESCCCCCSGGGGGG-----------S-------------------TTSHHHHHHHHHHSCTTCE
T ss_pred             HHHhhcCCCCCCEEEEECCCCccccchhhh-----------c-------------------cCCHHHHHHHHHHcCCCcE
Confidence            2  347888999999998877754211000           0                   0123466666678899999


Q ss_pred             EEEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhh-hcccCcCcccCCHHHHHHHHHhCCceEEeEEE
Q 044174          185 MVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAE-LDSFNLPIYSASSEEMVKLVDKNGHFSIKTVE  259 (332)
Q Consensus       185 mvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~-~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le  259 (332)
                      +++.....               +....++..+.+.|.-..+. .|-+..++......+|+....+.| +.|-++.
T Consensus       152 l~~~~~~~---------------~~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~t~~e~~~~~~g-~~i~~~~  211 (214)
T 1yzh_A          152 IHFKTDNR---------------GLFEYSLVSFSQYGMKLNGVWLDLHASDFEGNVMTEYEQKFSNKG-QVIYRVE  211 (214)
T ss_dssp             EEEEESCH---------------HHHHHHHHHHHHHTCEEEEEESSGGGSCCCCCCCCHHHHHTGGGC-CCCEEEE
T ss_pred             EEEEeCCH---------------HHHHHHHHHHHHCCCeeeeccccccccCCCCCCCcHHHHHHHHCC-CCeEEEE
Confidence            99865221               12233444444556422111 122222333334457888888888 6766654

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=98.25  E-value=1.4e-05  Score=74.39  Aligned_cols=61  Identities=13%  Similarity=0.249  Sum_probs=39.1

Q ss_pred             HHHHHHHhhccCCeEEEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhC
Q 044174          171 FLNARAEEIVSGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKN  250 (332)
Q Consensus       171 fL~~Ra~EL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~  250 (332)
                      .|+.-.+-|+|||+|++.....+..       -. -.+.+...++   .           ...|+.++|.+|+.+.++  
T Consensus       182 ~l~~l~~~L~PGG~Lvls~~~~d~~-------p~-~~~~~~~~~~---~-----------~g~p~~~rs~~ei~~~f~--  237 (277)
T 3giw_A          182 IVRRLLEPLPSGSYLAMSIGTAEFA-------PQ-EVGRVAREYA---A-----------RNMPMRLRTHAEAEEFFE--  237 (277)
T ss_dssp             HHHHHHTTSCTTCEEEEEEECCTTS-------HH-HHHHHHHHHH---H-----------TTCCCCCCCHHHHHHTTT--
T ss_pred             HHHHHHHhCCCCcEEEEEeccCCCC-------HH-HHHHHHHHHH---h-----------cCCCCccCCHHHHHHHhC--
Confidence            4555557899999999998775421       01 1122222221   1           224889999999999995  


Q ss_pred             CceEEe
Q 044174          251 GHFSIK  256 (332)
Q Consensus       251 G~F~I~  256 (332)
                      | |++.
T Consensus       238 G-lelv  242 (277)
T 3giw_A          238 G-LELV  242 (277)
T ss_dssp             T-SEEC
T ss_pred             C-Cccc
Confidence            8 7753

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.17  E-value=8.8e-06  Score=73.69  Aligned_cols=156  Identities=14%  Similarity=0.235  Sum_probs=86.4

Q ss_pred             CceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCccccC
Q 044174           29 NIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHR  108 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~~  108 (332)
                      ...+|+|+|||+|..+..+.+.                   ..+|+..|.-. +.-...+....  ..+   +-+++..-
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~-------------------~~~v~gvD~s~-~~l~~a~~~~~--~~~---~~~d~~~~  108 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQER-------------------GFEVVLVDPSK-EMLEVAREKGV--KNV---VEAKAEDL  108 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTT-------------------TCEEEEEESCH-HHHHHHHHHTC--SCE---EECCTTSC
T ss_pred             CCCeEEEeCCCcCHHHHHHHHc-------------------CCeEEEEeCCH-HHHHHHHhhcC--CCE---EECcHHHC
Confidence            4579999999999998776431                   02344444321 11111111111  112   33445555


Q ss_pred             CcCCCceeEEEecC-ccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEE
Q 044174          109 LFPQSSIHFAHCSY-ALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVI  187 (332)
Q Consensus       109 lfP~~svd~~~S~~-alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl  187 (332)
                      .+|++++|+++++. .+||... |                                     ..+|+.-++-|+|||++++
T Consensus       109 ~~~~~~fD~v~~~~~~~~~~~~-~-------------------------------------~~~l~~~~~~LkpgG~l~~  150 (260)
T 2avn_A          109 PFPSGAFEAVLALGDVLSYVEN-K-------------------------------------DKAFSEIRRVLVPDGLLIA  150 (260)
T ss_dssp             CSCTTCEEEEEECSSHHHHCSC-H-------------------------------------HHHHHHHHHHEEEEEEEEE
T ss_pred             CCCCCCEEEEEEcchhhhcccc-H-------------------------------------HHHHHHHHHHcCCCeEEEE
Confidence            57899999999976 5667433 1                                     2356666678999999999


Q ss_pred             EecccCCCCCCCCcchhHHHHHHH----HHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEeC
Q 044174          188 IMPGIPYGMPYSHLTNGVMYDLMA----TIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELTN  262 (332)
Q Consensus       188 ~~~gr~~~~~~~~~~~~~~~~~l~----~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~  262 (332)
                      ...+...          ...+.+.    ..+......|...... ....++.++.+.+|++++   .| |++.+++...
T Consensus       151 ~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~l---aG-f~~~~~~~~~  214 (260)
T 2avn_A          151 TVDNFYT----------FLQQMIEKDAWDQITRFLKTQTTSVGT-TLFSFNSYAFKPEDLDSL---EG-FETVDIRGIG  214 (260)
T ss_dssp             EEEBHHH----------HHHHHHHTTCHHHHHHHHHHCEEEEEC-SSEEEEEECBCGGGGSSC---TT-EEEEEEEEEC
T ss_pred             EeCChHH----------HHHHhhcchhHHHHHHHHhccccccCC-CceeEEEeccCHHHHHHh---cC-ceEEEEECCC
Confidence            9876421          0111110    1112223334332100 001112236788998888   89 9998888665

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=98.12  E-value=1.2e-05  Score=73.72  Aligned_cols=111  Identities=14%  Similarity=0.139  Sum_probs=67.7

Q ss_pred             ceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhc-C----cccccceeeecCCc
Q 044174           30 IIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTS-L----PQQREYYSAGVPGS  104 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~-l----~~~~~~f~~~vpgS  104 (332)
                      ..+|+|+|||+|..++.+.+.            +       .+|+-.|+-.. .-...+. .    ......-+..+.+.
T Consensus        58 ~~~vLDiGcG~G~~~~~l~~~------------~-------~~v~gvD~s~~-~l~~a~~~~~~~~~~~~~~~~~~~~~d  117 (293)
T 3thr_A           58 CHRVLDVACGTGVDSIMLVEE------------G-------FSVTSVDASDK-MLKYALKERWNRRKEPAFDKWVIEEAN  117 (293)
T ss_dssp             CCEEEETTCTTSHHHHHHHHT------------T-------CEEEEEESCHH-HHHHHHHHHHHTTTSHHHHTCEEEECC
T ss_pred             CCEEEEecCCCCHHHHHHHHC------------C-------CeEEEEECCHH-HHHHHHHhhhhcccccccceeeEeecC
Confidence            579999999999998877532            0       13444443221 1111111 0    00000011223344


Q ss_pred             cccCC---cCCCceeEEEec-CccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 044174          105 FHHRL---FPQSSIHFAHCS-YALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIV  180 (332)
Q Consensus       105 Fy~~l---fP~~svd~~~S~-~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~  180 (332)
                      +....   +|++++|+|+|+ .++|++......                               ..++..+|+.-++-|+
T Consensus       118 ~~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~-------------------------------~~~~~~~l~~~~~~Lk  166 (293)
T 3thr_A          118 WLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGD-------------------------------QSEHRLALKNIASMVR  166 (293)
T ss_dssp             GGGHHHHSCCTTCEEEEEECTTCGGGSCCSSSS-------------------------------SHHHHHHHHHHHHTEE
T ss_pred             hhhCccccccCCCeEEEEEcChHHhhcCccccC-------------------------------HHHHHHHHHHHHHHcC
Confidence            44433   789999999998 899997653311                               1356678888889999


Q ss_pred             cCCeEEEEecc
Q 044174          181 SGGMMVIIMPG  191 (332)
Q Consensus       181 pGG~mvl~~~g  191 (332)
                      |||++++....
T Consensus       167 pgG~l~~~~~~  177 (293)
T 3thr_A          167 PGGLLVIDHRN  177 (293)
T ss_dssp             EEEEEEEEEEC
T ss_pred             CCeEEEEEeCC
Confidence            99999998764

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=98.11  E-value=6.6e-06  Score=74.40  Aligned_cols=67  Identities=16%  Similarity=0.312  Sum_probs=40.8

Q ss_pred             HHHHHHHhhccCCeEEEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhC
Q 044174          171 FLNARAEEIVSGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKN  250 (332)
Q Consensus       171 fL~~Ra~EL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~  250 (332)
                      +|+.-++-|+|||++++.+ . +            .+   ...+..+-..|.+...       ..+..+.+++.+.+++.
T Consensus       119 ~l~~i~rvLkpgG~lv~~~-~-p------------~~---e~~~~~~~~~G~~~d~-------~~~~~~~~~l~~~l~~a  174 (232)
T 3opn_A          119 ILPPLYEILEKNGEVAALI-K-P------------QF---EAGREQVGKNGIIRDP-------KVHQMTIEKVLKTATQL  174 (232)
T ss_dssp             THHHHHHHSCTTCEEEEEE-C-H------------HH---HSCHHHHC-CCCCCCH-------HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCCCEEEEEE-C-c------------cc---ccCHHHhCcCCeecCc-------chhHHHHHHHHHHHHHC
Confidence            3455557788999999965 1 1            11   1222222223443211       12334889999999999


Q ss_pred             CceEEeEEEEeC
Q 044174          251 GHFSIKTVELTN  262 (332)
Q Consensus       251 G~F~I~~le~~~  262 (332)
                      | |++..++...
T Consensus       175 G-f~v~~~~~~p  185 (232)
T 3opn_A          175 G-FSVKGLTFSP  185 (232)
T ss_dssp             T-EEEEEEEECS
T ss_pred             C-CEEEEEEEcc
Confidence            9 9998887543

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=98.09  E-value=1.9e-05  Score=69.24  Aligned_cols=154  Identities=11%  Similarity=0.077  Sum_probs=83.7

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhc---Cccccc-ceeeecCC
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTS---LPQQRE-YYSAGVPG  103 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~---l~~~~~-~f~~~vpg  103 (332)
                      ....+|+|+|||+|..+..+.+.                 .|..+|+--|+-..=...+.+.   ...... --+.-+-+
T Consensus        26 ~~~~~vLDiGcG~G~~~~~la~~-----------------~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~   88 (218)
T 3mq2_A           26 QYDDVVLDVGTGDGKHPYKVARQ-----------------NPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWA   88 (218)
T ss_dssp             TSSEEEEEESCTTCHHHHHHHHH-----------------CTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEEC
T ss_pred             cCCCEEEEecCCCCHHHHHHHHH-----------------CCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEec
Confidence            44689999999999999877542                 1345666666544322222211   100000 01233445


Q ss_pred             ccccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 044174          104 SFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGG  183 (332)
Q Consensus       104 SFy~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG  183 (332)
                      ++.+-.+++++ |.++.  .+.|......                               ...|...+|+.-++-|||||
T Consensus        89 d~~~l~~~~~~-d~v~~--~~~~~~~~~~-------------------------------~~~~~~~~l~~~~~~LkpgG  134 (218)
T 3mq2_A           89 TAERLPPLSGV-GELHV--LMPWGSLLRG-------------------------------VLGSSPEMLRGMAAVCRPGA  134 (218)
T ss_dssp             CSTTCCSCCCE-EEEEE--ESCCHHHHHH-------------------------------HHTSSSHHHHHHHHTEEEEE
T ss_pred             chhhCCCCCCC-CEEEE--Eccchhhhhh-------------------------------hhccHHHHHHHHHHHcCCCc
Confidence            56665667777 77763  2223211000                               01112346666778899999


Q ss_pred             eEEEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccC--CHHHHHHHHHhCCceEEeEEEEe
Q 044174          184 MMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSA--SSEEMVKLVDKNGHFSIKTVELT  261 (332)
Q Consensus       184 ~mvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~p--s~~E~~~~ie~~G~F~I~~le~~  261 (332)
                      ++++.+.........                         .  ++.  ..|.+.+  ..++++..+++.| |+|..++.+
T Consensus       135 ~l~~~~~~~~~~~~~-------------------------~--~~~--~~~~~~~~~~~~~l~~~l~~aG-f~i~~~~~~  184 (218)
T 3mq2_A          135 SFLVALNLHAWRPSV-------------------------P--EVG--EHPEPTPDSADEWLAPRYAEAG-WKLADCRYL  184 (218)
T ss_dssp             EEEEEEEGGGBTTBC-------------------------G--GGT--TCCCCCHHHHHHHHHHHHHHTT-EEEEEEEEE
T ss_pred             EEEEEeccccccccc-------------------------c--ccc--cCCccchHHHHHHHHHHHHHcC-CCceeeecc
Confidence            999977542211100                         0  001  1222111  2456888999999 999999987


Q ss_pred             C
Q 044174          262 N  262 (332)
Q Consensus       262 ~  262 (332)
                      .
T Consensus       185 ~  185 (218)
T 3mq2_A          185 E  185 (218)
T ss_dssp             C
T ss_pred             c
Confidence            5

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=98.08  E-value=2.7e-05  Score=67.58  Aligned_cols=20  Identities=30%  Similarity=0.406  Sum_probs=16.6

Q ss_pred             CceEEEeecCCCCcchHHHH
Q 044174           29 NIIRLADLGCAVGSNTINAM   48 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~   48 (332)
                      ...+|+|+|||+|..++.+.
T Consensus        60 ~~~~vLDiG~G~G~~~~~l~   79 (205)
T 3grz_A           60 KPLTVADVGTGSGILAIAAH   79 (205)
T ss_dssp             SCCEEEEETCTTSHHHHHHH
T ss_pred             CCCEEEEECCCCCHHHHHHH
Confidence            35799999999998887754

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=98.08  E-value=1.1e-05  Score=73.40  Aligned_cols=123  Identities=13%  Similarity=0.085  Sum_probs=68.8

Q ss_pred             HHHHHHHHhhhhcccCCCCCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhc
Q 044174           10 KIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTS   89 (332)
Q Consensus        10 ~l~~ai~~~~~~~~~~~~~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~   89 (332)
                      .|-.||..-++.  ++ .....+|+|+|||+|..|..+.+.+ .               |+=.||--|.-. +.....+.
T Consensus        61 klaa~i~~gl~~--l~-ikpG~~VldlG~G~G~~~~~la~~V-G---------------~~G~V~avD~s~-~~~~~l~~  120 (233)
T 4df3_A           61 KLAAALLKGLIE--LP-VKEGDRILYLGIASGTTASHMSDII-G---------------PRGRIYGVEFAP-RVMRDLLT  120 (233)
T ss_dssp             HHHHHHHTTCSC--CC-CCTTCEEEEETCTTSHHHHHHHHHH-C---------------TTCEEEEEECCH-HHHHHHHH
T ss_pred             HHHHHHHhchhh--cC-CCCCCEEEEecCcCCHHHHHHHHHh-C---------------CCceEEEEeCCH-HHHHHHHH
Confidence            455666443332  21 3446899999999999998876432 0               111222222211 11111111


Q ss_pred             Cc-cccc-ceeeecCCccccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHH
Q 044174           90 LP-QQRE-YYSAGVPGSFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKD  167 (332)
Q Consensus        90 l~-~~~~-~f~~~vpgSFy~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d  167 (332)
                      .. ...+ ..+.+..+....-.++.+++|++|+..+.||                                        |
T Consensus       121 ~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d~~~~~----------------------------------------~  160 (233)
T 4df3_A          121 VVRDRRNIFPILGDARFPEKYRHLVEGVDGLYADVAQPE----------------------------------------Q  160 (233)
T ss_dssp             HSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEECCCCTT----------------------------------------H
T ss_pred             hhHhhcCeeEEEEeccCccccccccceEEEEEEeccCCh----------------------------------------h
Confidence            11 1111 3455555555555677889999998766665                                        1


Q ss_pred             HHHHHHHHHHhhccCCeEEEEeccc
Q 044174          168 MENFLNARAEEIVSGGMMVIIMPGI  192 (332)
Q Consensus       168 ~~~fL~~Ra~EL~pGG~mvl~~~gr  192 (332)
                      -..+++.-.+-|||||++++..-.+
T Consensus       161 ~~~~l~~~~r~LKpGG~lvI~ik~r  185 (233)
T 4df3_A          161 AAIVVRNARFFLRDGGYMLMAIKAR  185 (233)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             HHHHHHHHHHhccCCCEEEEEEecc
Confidence            1134555556788999999987543

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=98.08  E-value=3.5e-06  Score=71.90  Aligned_cols=72  Identities=17%  Similarity=0.042  Sum_probs=44.4

Q ss_pred             ceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCccccCC
Q 044174           30 IIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHRL  109 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~~l  109 (332)
                      .-+|+|+|||+|..++.+.+..                    +|+--|.     +.-.-....  +  +..+-|++.. .
T Consensus        24 ~~~vLD~GcG~G~~~~~l~~~~--------------------~v~gvD~-----s~~~~~~~~--~--~~~~~~d~~~-~   73 (170)
T 3q87_B           24 MKIVLDLGTSTGVITEQLRKRN--------------------TVVSTDL-----NIRALESHR--G--GNLVRADLLC-S   73 (170)
T ss_dssp             SCEEEEETCTTCHHHHHHTTTS--------------------EEEEEES-----CHHHHHTCS--S--SCEEECSTTT-T
T ss_pred             CCeEEEeccCccHHHHHHHhcC--------------------cEEEEEC-----CHHHHhccc--C--CeEEECChhh-h
Confidence            3499999999999998875432                    2333332     111111111  1  1223455555 5


Q ss_pred             cCCCceeEEEecCccccccCCc
Q 044174          110 FPQSSIHFAHCSYALHWLSKVP  131 (332)
Q Consensus       110 fP~~svd~~~S~~alHWLs~~P  131 (332)
                      +|++++|+++|+..+||.+..+
T Consensus        74 ~~~~~fD~i~~n~~~~~~~~~~   95 (170)
T 3q87_B           74 INQESVDVVVFNPPYVPDTDDP   95 (170)
T ss_dssp             BCGGGCSEEEECCCCBTTCCCT
T ss_pred             cccCCCCEEEECCCCccCCccc
Confidence            6779999999999999987654

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=98.03  E-value=2.8e-05  Score=67.08  Aligned_cols=55  Identities=13%  Similarity=0.031  Sum_probs=35.5

Q ss_pred             cCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEe
Q 044174          110 FPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIM  189 (332)
Q Consensus       110 fP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~~  189 (332)
                      +|++++|+++|+.++||.....   .+                   .     ....+.....|+.=.+-|+|||+|++.+
T Consensus       102 ~~~~~fD~v~~~~~~~~~g~~~---~d-------------------~-----~~~~~~~~~~l~~~~~~LkpgG~lv~~~  154 (201)
T 2plw_A          102 LQDKKIDIILSDAAVPCIGNKI---DD-------------------H-----LNSCELTLSITHFMEQYINIGGTYIVKM  154 (201)
T ss_dssp             HTTCCEEEEEECCCCCCCSCHH---HH-------------------H-----HHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCCCcccEEEeCCCcCCCCCcc---cC-------------------H-----HHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence            6888999999999999942200   00                   0     0111223345666667889999999976


Q ss_pred             cc
Q 044174          190 PG  191 (332)
Q Consensus       190 ~g  191 (332)
                      ..
T Consensus       155 ~~  156 (201)
T 2plw_A          155 YL  156 (201)
T ss_dssp             EC
T ss_pred             eC
Confidence            54

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=98.02  E-value=7.9e-05  Score=62.60  Aligned_cols=101  Identities=14%  Similarity=0.124  Sum_probs=58.3

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCccc--c-cceeeecCCc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQ--R-EYYSAGVPGS  104 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~--~-~~f~~~vpgS  104 (332)
                      ....+|+|+|||+|..++.+...                 .|..+|+..|.-..-....=+.+...  . ++++.   +.
T Consensus        24 ~~~~~vldiG~G~G~~~~~l~~~-----------------~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~---~d   83 (178)
T 3hm2_A           24 KPHETLWDIGGGSGSIAIEWLRS-----------------TPQTTAVCFEISEERRERILSNAINLGVSDRIAVQ---QG   83 (178)
T ss_dssp             CTTEEEEEESTTTTHHHHHHHTT-----------------SSSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEE---CC
T ss_pred             cCCCeEEEeCCCCCHHHHHHHHH-----------------CCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEe---cc
Confidence            44579999999999988776431                 12355555555332111111111110  0 22211   33


Q ss_pred             cccCCcCC--CceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 044174          105 FHHRLFPQ--SSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSG  182 (332)
Q Consensus       105 Fy~~lfP~--~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pG  182 (332)
                      ... .+|.  +++|+++++.++||    +                                      .+|+.-.+-|+||
T Consensus        84 ~~~-~~~~~~~~~D~i~~~~~~~~----~--------------------------------------~~l~~~~~~L~~g  120 (178)
T 3hm2_A           84 APR-AFDDVPDNPDVIFIGGGLTA----P--------------------------------------GVFAAAWKRLPVG  120 (178)
T ss_dssp             TTG-GGGGCCSCCSEEEECC-TTC----T--------------------------------------THHHHHHHTCCTT
T ss_pred             hHh-hhhccCCCCCEEEECCcccH----H--------------------------------------HHHHHHHHhcCCC
Confidence            322 3444  89999999999988    1                                      1344455788999


Q ss_pred             CeEEEEecc
Q 044174          183 GMMVIIMPG  191 (332)
Q Consensus       183 G~mvl~~~g  191 (332)
                      |++++....
T Consensus       121 G~l~~~~~~  129 (178)
T 3hm2_A          121 GRLVANAVT  129 (178)
T ss_dssp             CEEEEEECS
T ss_pred             CEEEEEeec
Confidence            999988754

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=98.01  E-value=2.9e-05  Score=71.69  Aligned_cols=22  Identities=14%  Similarity=0.025  Sum_probs=18.6

Q ss_pred             CCceEEEeecCCCCcchHHHHH
Q 044174           28 SNIIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~   49 (332)
                      ....+|+|+|||+|..|+.+++
T Consensus        44 ~~g~~VLDlGcGtG~~a~~La~   65 (261)
T 3iv6_A           44 VPGSTVAVIGASTRFLIEKALE   65 (261)
T ss_dssp             CTTCEEEEECTTCHHHHHHHHH
T ss_pred             CCcCEEEEEeCcchHHHHHHHh
Confidence            4457999999999999988763

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=97.98  E-value=8.1e-05  Score=64.28  Aligned_cols=122  Identities=15%  Similarity=0.128  Sum_probs=69.6

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCcccc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHH  107 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~  107 (332)
                      +...+|+|+|||+|..++.+...            +     +. +|+-.|.-..-....-+......+  +..+.+++..
T Consensus        41 ~~~~~vLdiGcG~G~~~~~l~~~------------~-----~~-~v~~~D~s~~~~~~a~~~~~~~~~--i~~~~~d~~~  100 (215)
T 2pxx_A           41 RPEDRILVLGCGNSALSYELFLG------------G-----FP-NVTSVDYSSVVVAAMQACYAHVPQ--LRWETMDVRK  100 (215)
T ss_dssp             CTTCCEEEETCTTCSHHHHHHHT------------T-----CC-CEEEEESCHHHHHHHHHHTTTCTT--CEEEECCTTS
T ss_pred             CCCCeEEEECCCCcHHHHHHHHc------------C-----CC-cEEEEeCCHHHHHHHHHhcccCCC--cEEEEcchhc
Confidence            34579999999999999876532            0     01 233333321111111111111011  1122334444


Q ss_pred             CCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEE
Q 044174          108 RLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVI  187 (332)
Q Consensus       108 ~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl  187 (332)
                      -.+|++++|+|+++.++|.+.....       ..|...                .....+...+|+.-.+-|+|||++++
T Consensus       101 ~~~~~~~fD~v~~~~~~~~~~~~~~-------~~~~~~----------------~~~~~~~~~~l~~~~~~LkpgG~li~  157 (215)
T 2pxx_A          101 LDFPSASFDVVLEKGTLDALLAGER-------DPWTVS----------------SEGVHTVDQVLSEVSRVLVPGGRFIS  157 (215)
T ss_dssp             CCSCSSCEEEEEEESHHHHHTTTCS-------CTTSCC----------------HHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CCCCCCcccEEEECcchhhhccccc-------cccccc----------------cchhHHHHHHHHHHHHhCcCCCEEEE
Confidence            4578899999999999987643211       111111                12345667788888889999999999


Q ss_pred             Eeccc
Q 044174          188 IMPGI  192 (332)
Q Consensus       188 ~~~gr  192 (332)
                      ...+.
T Consensus       158 ~~~~~  162 (215)
T 2pxx_A          158 MTSAA  162 (215)
T ss_dssp             EESCC
T ss_pred             EeCCC
Confidence            98764

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=97.97  E-value=5.6e-05  Score=73.33  Aligned_cols=108  Identities=14%  Similarity=0.143  Sum_probs=65.3

Q ss_pred             CceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHh-cCcccccceeeecCCcccc
Q 044174           29 NIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFT-SLPQQREYYSAGVPGSFHH  107 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~-~l~~~~~~f~~~vpgSFy~  107 (332)
                      ...+|+|+|||+|..++.+...                   ..+|+..|.-.. .-...+ ++... ..-+..+-+++..
T Consensus       233 ~~~~VLDlGcG~G~~~~~la~~-------------------g~~V~gvDis~~-al~~A~~n~~~~-~~~v~~~~~D~~~  291 (381)
T 3dmg_A          233 RGRQVLDLGAGYGALTLPLARM-------------------GAEVVGVEDDLA-SVLSLQKGLEAN-ALKAQALHSDVDE  291 (381)
T ss_dssp             TTCEEEEETCTTSTTHHHHHHT-------------------TCEEEEEESBHH-HHHHHHHHHHHT-TCCCEEEECSTTT
T ss_pred             CCCEEEEEeeeCCHHHHHHHHc-------------------CCEEEEEECCHH-HHHHHHHHHHHc-CCCeEEEEcchhh
Confidence            4579999999999999887642                   013333332110 000111 01100 0112234455566


Q ss_pred             CCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEE
Q 044174          108 RLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVI  187 (332)
Q Consensus       108 ~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl  187 (332)
                      .+.+++++|+|+|+..+||......                                 .+...|++.-.+-|+|||++++
T Consensus       292 ~~~~~~~fD~Ii~npp~~~~~~~~~---------------------------------~~~~~~l~~~~~~LkpGG~l~i  338 (381)
T 3dmg_A          292 ALTEEARFDIIVTNPPFHVGGAVIL---------------------------------DVAQAFVNVAAARLRPGGVFFL  338 (381)
T ss_dssp             TSCTTCCEEEEEECCCCCTTCSSCC---------------------------------HHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ccccCCCeEEEEECCchhhcccccH---------------------------------HHHHHHHHHHHHhcCcCcEEEE
Confidence            5666789999999999998443221                                 2445677777788999999999


Q ss_pred             Eec
Q 044174          188 IMP  190 (332)
Q Consensus       188 ~~~  190 (332)
                      +..
T Consensus       339 v~n  341 (381)
T 3dmg_A          339 VSN  341 (381)
T ss_dssp             EEC
T ss_pred             EEc
Confidence            863

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=97.96  E-value=3.2e-05  Score=68.39  Aligned_cols=21  Identities=10%  Similarity=0.049  Sum_probs=17.7

Q ss_pred             CceEEEeecCCCCcchHHHHH
Q 044174           29 NIIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~   49 (332)
                      ...+|+|+|||+|..++.+..
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~   58 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAK   58 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHH
T ss_pred             CCceEEEEecCCCHHHHHHHH
Confidence            356899999999999988754

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=97.96  E-value=1.5e-05  Score=76.16  Aligned_cols=103  Identities=12%  Similarity=0.113  Sum_probs=68.0

Q ss_pred             ceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccc--cceeeecCCcccc
Q 044174           30 IIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQR--EYYSAGVPGSFHH  107 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~--~~f~~~vpgSFy~  107 (332)
                      ..+|+|+|||+|..++.+++.                  +.-+|+--|.. . .-...+......  .--+.-+-|++.+
T Consensus        67 ~~~VLDvGcG~G~~~~~la~~------------------g~~~v~gvD~s-~-~l~~a~~~~~~~~~~~~v~~~~~d~~~  126 (349)
T 3q7e_A           67 DKVVLDVGSGTGILCMFAAKA------------------GARKVIGIECS-S-ISDYAVKIVKANKLDHVVTIIKGKVEE  126 (349)
T ss_dssp             TCEEEEESCTTSHHHHHHHHT------------------TCSEEEEEECS-T-HHHHHHHHHHHTTCTTTEEEEESCTTT
T ss_pred             CCEEEEEeccchHHHHHHHHC------------------CCCEEEEECcH-H-HHHHHHHHHHHcCCCCcEEEEECcHHH
Confidence            478999999999988776532                  12356677765 2 444444322111  1123445566666


Q ss_pred             CCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEE
Q 044174          108 RLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVI  187 (332)
Q Consensus       108 ~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl  187 (332)
                      -.+|++++|+++|....|++...+                                   ++..+|+.+.+-|+|||+|+.
T Consensus       127 ~~~~~~~fD~Iis~~~~~~l~~~~-----------------------------------~~~~~l~~~~r~LkpgG~li~  171 (349)
T 3q7e_A          127 VELPVEKVDIIISEWMGYCLFYES-----------------------------------MLNTVLHARDKWLAPDGLIFP  171 (349)
T ss_dssp             CCCSSSCEEEEEECCCBBTBTBTC-----------------------------------CHHHHHHHHHHHEEEEEEEES
T ss_pred             ccCCCCceEEEEEccccccccCch-----------------------------------hHHHHHHHHHHhCCCCCEEcc
Confidence            678899999999987666543321                                   344678889999999999973

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=97.94  E-value=7.2e-05  Score=66.78  Aligned_cols=107  Identities=16%  Similarity=0.319  Sum_probs=59.4

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCcccc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHH  107 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~  107 (332)
                      ++..+|+|+|||+|..++.+++.            +       .+|+..|+-. +.-...+........-+..+.+.+..
T Consensus        40 ~~~~~vLDlGcG~G~~~~~l~~~------------~-------~~v~gvD~s~-~~l~~a~~~~~~~~~~v~~~~~d~~~   99 (252)
T 1wzn_A           40 REVRRVLDLACGTGIPTLELAER------------G-------YEVVGLDLHE-EMLRVARRKAKERNLKIEFLQGDVLE   99 (252)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHT------------T-------CEEEEEESCH-HHHHHHHHHHHHTTCCCEEEESCGGG
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHC------------C-------CeEEEEECCH-HHHHHHHHHHHhcCCceEEEECChhh
Confidence            34579999999999998877531            0       1233333211 11111111100000112223344444


Q ss_pred             CCcCCCceeEEEecC-ccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEE
Q 044174          108 RLFPQSSIHFAHCSY-ALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMV  186 (332)
Q Consensus       108 ~lfP~~svd~~~S~~-alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mv  186 (332)
                      -.+| +++|++++.. ++|+++.                                    .|...+|+.-++-|+|||+++
T Consensus       100 ~~~~-~~fD~v~~~~~~~~~~~~------------------------------------~~~~~~l~~~~~~L~pgG~li  142 (252)
T 1wzn_A          100 IAFK-NEFDAVTMFFSTIMYFDE------------------------------------EDLRKLFSKVAEALKPGGVFI  142 (252)
T ss_dssp             CCCC-SCEEEEEECSSGGGGSCH------------------------------------HHHHHHHHHHHHHEEEEEEEE
T ss_pred             cccC-CCccEEEEcCCchhcCCH------------------------------------HHHHHHHHHHHHHcCCCeEEE
Confidence            3333 6899999864 4444311                                    245567777778899999999


Q ss_pred             EEecc
Q 044174          187 IIMPG  191 (332)
Q Consensus       187 l~~~g  191 (332)
                      +.+..
T Consensus       143 ~~~~~  147 (252)
T 1wzn_A          143 TDFPC  147 (252)
T ss_dssp             EEEEC
T ss_pred             Eeccc
Confidence            98764

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=97.91  E-value=4.7e-05  Score=65.41  Aligned_cols=47  Identities=15%  Similarity=0.074  Sum_probs=33.7

Q ss_pred             CCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHH--hhccCCeEEEE
Q 044174          111 PQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAE--EIVSGGMMVII  188 (332)
Q Consensus       111 P~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~--EL~pGG~mvl~  188 (332)
                      +++++|+++++..+||..                                     .++..+|+.-.+  -|+|||++++.
T Consensus       110 ~~~~fD~i~~~~p~~~~~-------------------------------------~~~~~~l~~~~~~~~L~pgG~l~~~  152 (189)
T 3p9n_A          110 TTSPVDLVLADPPYNVDS-------------------------------------ADVDAILAALGTNGWTREGTVAVVE  152 (189)
T ss_dssp             CSSCCSEEEECCCTTSCH-------------------------------------HHHHHHHHHHHHSSSCCTTCEEEEE
T ss_pred             cCCCccEEEECCCCCcch-------------------------------------hhHHHHHHHHHhcCccCCCeEEEEE
Confidence            568999999987777621                                     234445555555  89999999999


Q ss_pred             ecccCC
Q 044174          189 MPGIPY  194 (332)
Q Consensus       189 ~~gr~~  194 (332)
                      ...+..
T Consensus       153 ~~~~~~  158 (189)
T 3p9n_A          153 RATTCA  158 (189)
T ss_dssp             EETTSC
T ss_pred             ecCCCC
Confidence            876543

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=97.89  E-value=2.9e-05  Score=64.40  Aligned_cols=111  Identities=14%  Similarity=0.157  Sum_probs=65.4

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCcccc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHH  107 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~  107 (332)
                      ....+|+|+|||+|..+..+.+..           +     +..+++..|...  ..    .++   +  +..+.+.+..
T Consensus        21 ~~~~~vLd~G~G~G~~~~~l~~~~-----------~-----~~~~v~~~D~~~--~~----~~~---~--~~~~~~d~~~   73 (180)
T 1ej0_A           21 KPGMTVVDLGAAPGGWSQYVVTQI-----------G-----GKGRIIACDLLP--MD----PIV---G--VDFLQGDFRD   73 (180)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHH-----------C-----TTCEEEEEESSC--CC----CCT---T--EEEEESCTTS
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHHh-----------C-----CCCeEEEEECcc--cc----ccC---c--EEEEEccccc
Confidence            334699999999999888765432           0     123444444432  10    111   1  1112333333


Q ss_pred             CC--------cCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044174          108 RL--------FPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEI  179 (332)
Q Consensus       108 ~l--------fP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL  179 (332)
                      -.        +|++++|+++++..+||........                           .........+|+.-.+-|
T Consensus        74 ~~~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~l~~~~~~L  126 (180)
T 1ej0_A           74 ELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDI---------------------------PRAMYLVELALEMCRDVL  126 (180)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHH---------------------------HHHHHHHHHHHHHHHHHE
T ss_pred             chhhhhhhccCCCCceeEEEECCCccccCCCccch---------------------------HHHHHHHHHHHHHHHHHc
Confidence            22        6788999999999999965421100                           011122356677777889


Q ss_pred             ccCCeEEEEeccc
Q 044174          180 VSGGMMVIIMPGI  192 (332)
Q Consensus       180 ~pGG~mvl~~~gr  192 (332)
                      +|||++++.....
T Consensus       127 ~~gG~l~~~~~~~  139 (180)
T 1ej0_A          127 APGGSFVVKVFQG  139 (180)
T ss_dssp             EEEEEEEEEEESS
T ss_pred             CCCcEEEEEEecC
Confidence            9999999987653

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=97.89  E-value=0.00012  Score=64.40  Aligned_cols=63  Identities=11%  Similarity=0.100  Sum_probs=33.6

Q ss_pred             cCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEe
Q 044174          110 FPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIM  189 (332)
Q Consensus       110 fP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~~  189 (332)
                      +|++++|+++++-..||......  .. ....+..|.                ....+...+|+.-.+-|+|||++++.+
T Consensus       119 ~~~~~fD~I~~npp~~~~~~~~~--~~-~~~~~~~~~----------------~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (230)
T 3evz_A          119 VVEGTFDVIFSAPPYYDKPLGRV--LT-EREAIGGGK----------------YGEEFSVKLLEEAFDHLNPGGKVALYL  179 (230)
T ss_dssp             TCCSCEEEEEECCCCC------------------CCS----------------SSCHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             cccCceeEEEECCCCcCCccccc--cC-hhhhhccCc----------------cchHHHHHHHHHHHHHhCCCeEEEEEe
Confidence            45689999999988888655211  00 000010100                011233567777778899999999986


Q ss_pred             cc
Q 044174          190 PG  191 (332)
Q Consensus       190 ~g  191 (332)
                      ..
T Consensus       180 ~~  181 (230)
T 3evz_A          180 PD  181 (230)
T ss_dssp             ES
T ss_pred             cc
Confidence            43

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=97.88  E-value=0.0001  Score=62.70  Aligned_cols=21  Identities=14%  Similarity=0.064  Sum_probs=18.1

Q ss_pred             CCceEEEeecCCCCcchHHHH
Q 044174           28 SNIIRLADLGCAVGSNTINAM   48 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~   48 (332)
                      ++.-+|+|+|||+|..|+.+.
T Consensus        21 ~~~~~vLDiGcG~G~~~~~la   41 (185)
T 3mti_A           21 DDESIVVDATMGNGNDTAFLA   41 (185)
T ss_dssp             CTTCEEEESCCTTSHHHHHHH
T ss_pred             CCCCEEEEEcCCCCHHHHHHH
Confidence            345799999999999999886

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=97.87  E-value=7.7e-05  Score=64.82  Aligned_cols=81  Identities=11%  Similarity=-0.003  Sum_probs=43.7

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhc-CcccccceeeecCCccc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTS-LPQQREYYSAGVPGSFH  106 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~-l~~~~~~f~~~vpgSFy  106 (332)
                      .+..+|+|+|||+|..+..+....                   .+|+-.|.-. +.-...+. +....---+..+-+...
T Consensus        76 ~~~~~vLdiG~G~G~~~~~la~~~-------------------~~v~~vD~~~-~~~~~a~~~~~~~~~~~v~~~~~d~~  135 (210)
T 3lbf_A           76 TPQSRVLEIGTGSGYQTAILAHLV-------------------QHVCSVERIK-GLQWQARRRLKNLDLHNVSTRHGDGW  135 (210)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHS-------------------SEEEEEESCH-HHHHHHHHHHHHTTCCSEEEEESCGG
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhC-------------------CEEEEEecCH-HHHHHHHHHHHHcCCCceEEEECCcc
Confidence            445799999999999998876430                   0112222110 11111111 00000001223344555


Q ss_pred             cCCcCCCceeEEEecCcccccc
Q 044174          107 HRLFPQSSIHFAHCSYALHWLS  128 (332)
Q Consensus       107 ~~lfP~~svd~~~S~~alHWLs  128 (332)
                      ..+.+.+++|+++++.++||+.
T Consensus       136 ~~~~~~~~~D~i~~~~~~~~~~  157 (210)
T 3lbf_A          136 QGWQARAPFDAIIVTAAPPEIP  157 (210)
T ss_dssp             GCCGGGCCEEEEEESSBCSSCC
T ss_pred             cCCccCCCccEEEEccchhhhh
Confidence            5555678999999999998854

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=97.84  E-value=3.6e-05  Score=74.23  Aligned_cols=106  Identities=15%  Similarity=0.158  Sum_probs=69.8

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccc--cceeeecCCcc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQR--EYYSAGVPGSF  105 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~--~~f~~~vpgSF  105 (332)
                      .+..+|+|+|||+|..++.+++.            +      .-+|+.-|..  +.....+......  .--+.-+-|+.
T Consensus        62 ~~~~~VLDlGcGtG~ls~~la~~------------g------~~~V~gvD~s--~~~~~a~~~~~~~~~~~~v~~~~~d~  121 (376)
T 3r0q_C           62 FEGKTVLDVGTGSGILAIWSAQA------------G------ARKVYAVEAT--KMADHARALVKANNLDHIVEVIEGSV  121 (376)
T ss_dssp             TTTCEEEEESCTTTHHHHHHHHT------------T------CSEEEEEESS--TTHHHHHHHHHHTTCTTTEEEEESCG
T ss_pred             CCCCEEEEeccCcCHHHHHHHhc------------C------CCEEEEEccH--HHHHHHHHHHHHcCCCCeEEEEECch
Confidence            44579999999999988776431            1      1267777764  4444444432211  11134455666


Q ss_pred             ccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeE
Q 044174          106 HHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMM  185 (332)
Q Consensus       106 y~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~m  185 (332)
                      .+-.+| +++|+++|....|++...+                                   ++..+|+.+.+-|+|||+|
T Consensus       122 ~~~~~~-~~~D~Iv~~~~~~~l~~e~-----------------------------------~~~~~l~~~~~~LkpgG~l  165 (376)
T 3r0q_C          122 EDISLP-EKVDVIISEWMGYFLLRES-----------------------------------MFDSVISARDRWLKPTGVM  165 (376)
T ss_dssp             GGCCCS-SCEEEEEECCCBTTBTTTC-----------------------------------THHHHHHHHHHHEEEEEEE
T ss_pred             hhcCcC-CcceEEEEcChhhcccchH-----------------------------------HHHHHHHHHHhhCCCCeEE
Confidence            665666 8999999977777765321                                   3456888889999999999


Q ss_pred             EEEe
Q 044174          186 VIIM  189 (332)
Q Consensus       186 vl~~  189 (332)
                      ++.-
T Consensus       166 i~~~  169 (376)
T 3r0q_C          166 YPSH  169 (376)
T ss_dssp             ESSE
T ss_pred             EEec
Confidence            7653

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=97.84  E-value=9.5e-05  Score=64.13  Aligned_cols=22  Identities=23%  Similarity=0.324  Sum_probs=18.3

Q ss_pred             CCceEEEeecCCCCcchHHHHH
Q 044174           28 SNIIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~   49 (332)
                      ....+|+|+|||+|..++.+..
T Consensus        39 ~~~~~vLDiG~G~G~~~~~la~   60 (204)
T 3e05_A           39 QDDLVMWDIGAGSASVSIEASN   60 (204)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHH
T ss_pred             CCCCEEEEECCCCCHHHHHHHH
Confidence            3457999999999999988754

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=97.84  E-value=5.8e-05  Score=67.24  Aligned_cols=108  Identities=8%  Similarity=0.071  Sum_probs=60.5

Q ss_pred             CceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCccccC
Q 044174           29 NIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHR  108 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~~  108 (332)
                      ...+|+|+|||+|..+..+...                 .+ -+|+.-|.-. +.-...+........-+.-+-|++.+.
T Consensus        60 ~~~~vLDiGcGtG~~~~~l~~~-----------------~~-~~v~gvD~s~-~~l~~a~~~~~~~~~~v~~~~~d~~~~  120 (236)
T 1zx0_A           60 KGGRVLEVGFGMAIAASKVQEA-----------------PI-DEHWIIECND-GVFQRLRDWAPRQTHKVIPLKGLWEDV  120 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTS-----------------CE-EEEEEEECCH-HHHHHHHHHGGGCSSEEEEEESCHHHH
T ss_pred             CCCeEEEEeccCCHHHHHHHhc-----------------CC-CeEEEEcCCH-HHHHHHHHHHHhcCCCeEEEecCHHHh
Confidence            4579999999999988776320                 01 1344444322 122222221111111233344555544


Q ss_pred             --CcCCCceeEEEe-cCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeE
Q 044174          109 --LFPQSSIHFAHC-SYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMM  185 (332)
Q Consensus       109 --lfP~~svd~~~S-~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~m  185 (332)
                        -+|++++|+|++ .+++++ ....                                 ..++..+|+.-++-|||||+|
T Consensus       121 ~~~~~~~~fD~V~~d~~~~~~-~~~~---------------------------------~~~~~~~l~~~~r~LkpgG~l  166 (236)
T 1zx0_A          121 APTLPDGHFDGILYDTYPLSE-ETWH---------------------------------THQFNFIKNHAFRLLKPGGVL  166 (236)
T ss_dssp             GGGSCTTCEEEEEECCCCCBG-GGTT---------------------------------THHHHHHHHTHHHHEEEEEEE
T ss_pred             hcccCCCceEEEEECCcccch-hhhh---------------------------------hhhHHHHHHHHHHhcCCCeEE
Confidence              578899999999 666532 1100                                 123445677777889999999


Q ss_pred             EEEe
Q 044174          186 VIIM  189 (332)
Q Consensus       186 vl~~  189 (332)
                      ++.-
T Consensus       167 ~~~~  170 (236)
T 1zx0_A          167 TYCN  170 (236)
T ss_dssp             EECC
T ss_pred             EEEe
Confidence            8764

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=97.81  E-value=0.00017  Score=60.91  Aligned_cols=46  Identities=4%  Similarity=0.037  Sum_probs=35.2

Q ss_pred             cCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEe
Q 044174          110 FPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIM  189 (332)
Q Consensus       110 fP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~~  189 (332)
                      ++++++|+++++..+||-                                     ..++..+|+.-.+-|+|||++++..
T Consensus       115 ~~~~~~D~v~~~~~~~~~-------------------------------------~~~~~~~l~~~~~~L~~gG~l~~~~  157 (194)
T 1dus_A          115 VKDRKYNKIITNPPIRAG-------------------------------------KEVLHRIIEEGKELLKDNGEIWVVI  157 (194)
T ss_dssp             CTTSCEEEEEECCCSTTC-------------------------------------HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccCCceEEEECCCcccc-------------------------------------hhHHHHHHHHHHHHcCCCCEEEEEE
Confidence            457789999998888871                                     1244567777778899999999998


Q ss_pred             ccc
Q 044174          190 PGI  192 (332)
Q Consensus       190 ~gr  192 (332)
                      ...
T Consensus       158 ~~~  160 (194)
T 1dus_A          158 QTK  160 (194)
T ss_dssp             EST
T ss_pred             CCC
Confidence            664

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=97.80  E-value=0.00015  Score=64.80  Aligned_cols=68  Identities=16%  Similarity=0.136  Sum_probs=39.8

Q ss_pred             HHHHHHHHHhhccCCeEEEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHH
Q 044174          169 ENFLNARAEEIVSGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVD  248 (332)
Q Consensus       169 ~~fL~~Ra~EL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie  248 (332)
                      ..+|+.-++-|||||++++.......            ++.+...+.     +.      . ...|.|++. +|+++.++
T Consensus       119 ~~~l~~~~r~LkpGG~l~i~~~~~~~------------~~~~~~~~~-----~~------~-~~~~~~~~~-~el~~~l~  173 (225)
T 3p2e_A          119 RDILSNVADLAKKEAHFEFVTTYSDS------------YEEAEIKKR-----GL------P-LLSKAYFLS-EQYKAELS  173 (225)
T ss_dssp             HHHHHHHHTTEEEEEEEEEEECCCC--------------------------------------CCHHHHHS-HHHHHHHH
T ss_pred             HHHHHHHHHhcCCCcEEEEEEecccc------------chhchhhhc-----CC------C-CCChhhcch-HHHHHHHH
Confidence            34677777889999999995432111            011110011     10      0 112444443 47999999


Q ss_pred             hCCceEEeEEEEeC
Q 044174          249 KNGHFSIKTVELTN  262 (332)
Q Consensus       249 ~~G~F~I~~le~~~  262 (332)
                      +.| |+|..++.+.
T Consensus       174 ~aG-f~v~~~~~~~  186 (225)
T 3p2e_A          174 NSG-FRIDDVKELD  186 (225)
T ss_dssp             HHT-CEEEEEEEEC
T ss_pred             HcC-CCeeeeeecC
Confidence            999 9999999886

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=97.79  E-value=0.00011  Score=72.31  Aligned_cols=22  Identities=23%  Similarity=0.344  Sum_probs=18.4

Q ss_pred             CCceEEEeecCCCCcchHHHHH
Q 044174           28 SNIIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~   49 (332)
                      ...-+|+|+|||+|..++.++.
T Consensus       172 ~~gd~VLDLGCGtG~l~l~lA~  193 (438)
T 3uwp_A          172 TDDDLFVDLGSGVGQVVLQVAA  193 (438)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHH
T ss_pred             CCCCEEEEeCCCCCHHHHHHHH
Confidence            4457899999999999988763

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=97.75  E-value=0.00019  Score=64.70  Aligned_cols=21  Identities=24%  Similarity=0.556  Sum_probs=17.6

Q ss_pred             CCceEEEeecCCCCcchHHHH
Q 044174           28 SNIIRLADLGCAVGSNTINAM   48 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~   48 (332)
                      .+..+|+|+|||+|..++.++
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la   65 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELS   65 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHG
T ss_pred             CCCCeEEEEccCCcHHHHHHH
Confidence            456899999999999998875

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=97.74  E-value=2.4e-05  Score=69.75  Aligned_cols=112  Identities=15%  Similarity=0.229  Sum_probs=62.2

Q ss_pred             CceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcc--cccceeeecCCccc
Q 044174           29 NIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQ--QREYYSAGVPGSFH  106 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~--~~~~f~~~vpgSFy  106 (332)
                      ...+|+|+|||+|..++.+...                 .|...|+--|.-.+=-...-+....  ..+  +.-+-++..
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~-----------------~p~~~v~giD~s~~~l~~a~~~~~~~~l~n--v~~~~~Da~   94 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKD-----------------RPEQDFLGIEVHSPGVGACLASAHEEGLSN--LRVMCHDAV   94 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHH-----------------CTTSEEEEECSCHHHHHHHHHHHHHTTCSS--EEEECSCHH
T ss_pred             CCCeEEEEeeeChHHHHHHHHH-----------------CCCCeEEEEEecHHHHHHHHHHHHHhCCCc--EEEEECCHH
Confidence            4579999999999999887532                 1233344444322111111111100  001  112233322


Q ss_pred             ---cCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 044174          107 ---HRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGG  183 (332)
Q Consensus       107 ---~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG  183 (332)
                         ...+|++++|.+++++...|-.....           +.++.    .               ..||+.-++-|+|||
T Consensus        95 ~~l~~~~~~~~~d~v~~~~~~p~~~~~~~-----------~rr~~----~---------------~~~l~~~~r~LkpGG  144 (218)
T 3dxy_A           95 EVLHKMIPDNSLRMVQLFFPDPWHKARHN-----------KRRIV----Q---------------VPFAELVKSKLQLGG  144 (218)
T ss_dssp             HHHHHHSCTTCEEEEEEESCCCCCSGGGG-----------GGSSC----S---------------HHHHHHHHHHEEEEE
T ss_pred             HHHHHHcCCCChheEEEeCCCCccchhhh-----------hhhhh----h---------------HHHHHHHHHHcCCCc
Confidence               23478999999999999888433110           11110    0               136677778899999


Q ss_pred             eEEEEe
Q 044174          184 MMVIIM  189 (332)
Q Consensus       184 ~mvl~~  189 (332)
                      ++++..
T Consensus       145 ~l~i~t  150 (218)
T 3dxy_A          145 VFHMAT  150 (218)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            999876

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=97.70  E-value=0.00016  Score=65.74  Aligned_cols=19  Identities=32%  Similarity=0.293  Sum_probs=15.9

Q ss_pred             ceEEEeecCCCCcchHHHH
Q 044174           30 IIRLADLGCAVGSNTINAM   48 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~   48 (332)
                      ..+|+|+|||+|..++.+.
T Consensus       121 ~~~VLDiGcG~G~l~~~la  139 (254)
T 2nxc_A          121 GDKVLDLGTGSGVLAIAAE  139 (254)
T ss_dssp             TCEEEEETCTTSHHHHHHH
T ss_pred             CCEEEEecCCCcHHHHHHH
Confidence            4699999999999887653

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=97.68  E-value=0.00015  Score=68.86  Aligned_cols=103  Identities=15%  Similarity=0.181  Sum_probs=62.6

Q ss_pred             CceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccc--cceeeecCCccc
Q 044174           29 NIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQR--EYYSAGVPGSFH  106 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~--~~f~~~vpgSFy  106 (332)
                      +.-+|+|+|||+|..++.+++.                  ...+|+--|..  +.-...+......  .--+..+-|.+.
T Consensus        64 ~~~~VLDiGcGtG~ls~~la~~------------------g~~~v~gvD~s--~~~~~a~~~~~~~~~~~~i~~~~~d~~  123 (340)
T 2fyt_A           64 KDKVVLDVGCGTGILSMFAAKA------------------GAKKVLGVDQS--EILYQAMDIIRLNKLEDTITLIKGKIE  123 (340)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT------------------TCSEEEEEESS--THHHHHHHHHHHTTCTTTEEEEESCTT
T ss_pred             CCCEEEEeeccCcHHHHHHHHc------------------CCCEEEEEChH--HHHHHHHHHHHHcCCCCcEEEEEeeHH
Confidence            3469999999999988765431                  11356666764  2333333221110  011233455555


Q ss_pred             cCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEE
Q 044174          107 HRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMV  186 (332)
Q Consensus       107 ~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mv  186 (332)
                      +..+|++++|+++|....+-+..                                   ..++..+|+.+.+-|+|||+++
T Consensus       124 ~~~~~~~~~D~Ivs~~~~~~l~~-----------------------------------~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          124 EVHLPVEKVDVIISEWMGYFLLF-----------------------------------ESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             TSCCSCSCEEEEEECCCBTTBTT-----------------------------------TCHHHHHHHHHHHHEEEEEEEE
T ss_pred             HhcCCCCcEEEEEEcCchhhccC-----------------------------------HHHHHHHHHHHHhhcCCCcEEE
Confidence            65678899999999652111110                                   1245568888999999999998

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=97.65  E-value=0.00014  Score=66.48  Aligned_cols=124  Identities=13%  Similarity=0.142  Sum_probs=67.4

Q ss_pred             ceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcC-cccccceeeecCCccccC
Q 044174           30 IIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSL-PQQREYYSAGVPGSFHHR  108 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l-~~~~~~f~~~vpgSFy~~  108 (332)
                      ..+|+|+|||+|..++.+...                 .|..+|+..|.-. +.-.+.+.. ....---+..+-+++.. 
T Consensus       110 ~~~vLDlG~GsG~~~~~la~~-----------------~~~~~v~~vD~s~-~~l~~a~~n~~~~~~~~v~~~~~d~~~-  170 (276)
T 2b3t_A          110 PCRILDLGTGTGAIALALASE-----------------RPDCEIIAVDRMP-DAVSLAQRNAQHLAIKNIHILQSDWFS-  170 (276)
T ss_dssp             CCEEEEETCTTSHHHHHHHHH-----------------CTTSEEEEECSSH-HHHHHHHHHHHHHTCCSEEEECCSTTG-
T ss_pred             CCEEEEecCCccHHHHHHHHh-----------------CCCCEEEEEECCH-HHHHHHHHHHHHcCCCceEEEEcchhh-
Confidence            469999999999999877532                 0123444444321 111111110 00000012233444444 


Q ss_pred             CcCCCceeEEEecCccccccCCcc---ccccC-CCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCe
Q 044174          109 LFPQSSIHFAHCSYALHWLSKVPE---ELLDE-NSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGM  184 (332)
Q Consensus       109 lfP~~svd~~~S~~alHWLs~~P~---~~~~~-~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~  184 (332)
                      .+|++++|+++|+...+|... +.   .+... ...++..|                .....++..+++.=.+-|+|||+
T Consensus       171 ~~~~~~fD~Iv~npPy~~~~~-~~l~~~v~~~~p~~al~~~----------------~~g~~~~~~~l~~~~~~LkpgG~  233 (276)
T 2b3t_A          171 ALAGQQFAMIVSNPPYIDEQD-PHLQQGDVRFEPLTALVAA----------------DSGMADIVHIIEQSRNALVSGGF  233 (276)
T ss_dssp             GGTTCCEEEEEECCCCBCTTC-HHHHSSGGGSSCSTTTBCH----------------HHHTHHHHHHHHHHGGGEEEEEE
T ss_pred             hcccCCccEEEECCCCCCccc-cccChhhhhcCcHHHHcCC----------------CcHHHHHHHHHHHHHHhcCCCCE
Confidence            345778999999988887654 21   11110 00011111                23345667788888889999999


Q ss_pred             EEEEe
Q 044174          185 MVIIM  189 (332)
Q Consensus       185 mvl~~  189 (332)
                      ++++.
T Consensus       234 l~~~~  238 (276)
T 2b3t_A          234 LLLEH  238 (276)
T ss_dssp             EEEEC
T ss_pred             EEEEE
Confidence            99985

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=97.62  E-value=0.00033  Score=61.95  Aligned_cols=21  Identities=19%  Similarity=0.371  Sum_probs=17.3

Q ss_pred             CceEEEeecCCCCcchHHHHH
Q 044174           29 NIIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~   49 (332)
                      ...+|+|+|||+|..+..+.+
T Consensus        48 ~~~~vLDiGcG~G~~~~~l~~   68 (226)
T 3m33_A           48 PQTRVLEAGCGHGPDAARFGP   68 (226)
T ss_dssp             TTCEEEEESCTTSHHHHHHGG
T ss_pred             CCCeEEEeCCCCCHHHHHHHH
Confidence            357999999999998877653

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=97.61  E-value=3.6e-05  Score=66.38  Aligned_cols=128  Identities=9%  Similarity=0.039  Sum_probs=60.4

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCcccc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHH  107 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~  107 (332)
                      .+..+|+|+|||+|..++.+....                 +..+++..|.-..= -...+........-+..+-+++..
T Consensus        29 ~~~~~vLDiG~G~G~~~~~l~~~~-----------------~~~~v~~vD~~~~~-~~~a~~~~~~~~~~~~~~~~d~~~   90 (215)
T 4dzr_A           29 PSGTRVIDVGTGSGCIAVSIALAC-----------------PGVSVTAVDLSMDA-LAVARRNAERFGAVVDWAAADGIE   90 (215)
T ss_dssp             CTTEEEEEEESSBCHHHHHHHHHC-----------------TTEEEEEEECC--------------------CCHHHHHH
T ss_pred             CCCCEEEEecCCHhHHHHHHHHhC-----------------CCCeEEEEECCHHH-HHHHHHHHHHhCCceEEEEcchHh
Confidence            456899999999999888775431                 23445555542211 111111100000122234444444


Q ss_pred             CCcCC-----CceeEEEecCccccccCCc---cccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044174          108 RLFPQ-----SSIHFAHCSYALHWLSKVP---EELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEI  179 (332)
Q Consensus       108 ~lfP~-----~svd~~~S~~alHWLs~~P---~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL  179 (332)
                       .+++     +++|+++++-.+|+.....   ..+.... +     .....+         .......+..||+.-.+-|
T Consensus        91 -~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~-~-----~~~~~~---------~~~~~~~~~~~l~~~~~~L  154 (215)
T 4dzr_A           91 -WLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYE-P-----RLALDG---------GEDGLQFYRRMAALPPYVL  154 (215)
T ss_dssp             -HHHHHHHTTCCBSEEEECCCCCC---------------------------------------CTTHHHHHHHTCCGGGB
T ss_pred             -hhhhhhhccCcccEEEECCCCCCCccccccChhhhccC-c-----cccccC---------CCcHHHHHHHHHHHHHHHh
Confidence             4555     8999999987776644321   1111000 0     000000         0112234467888888899


Q ss_pred             ccCCe-EEEEe
Q 044174          180 VSGGM-MVIIM  189 (332)
Q Consensus       180 ~pGG~-mvl~~  189 (332)
                      +|||+ +++.+
T Consensus       155 kpgG~l~~~~~  165 (215)
T 4dzr_A          155 ARGRAGVFLEV  165 (215)
T ss_dssp             CSSSEEEEEEC
T ss_pred             cCCCeEEEEEE
Confidence            99999 55544

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=97.60  E-value=6.4e-05  Score=72.71  Aligned_cols=108  Identities=12%  Similarity=0.126  Sum_probs=60.0

Q ss_pred             ceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhc-Cccc---ccceeeecCCcc
Q 044174           30 IIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTS-LPQQ---REYYSAGVPGSF  105 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~-l~~~---~~~f~~~vpgSF  105 (332)
                      ..+|+|+|||+|..++.++..                 .|..+|+..|.-. ......+. +...   ...-+..+-+++
T Consensus       223 ~~~VLDlGcG~G~~s~~la~~-----------------~p~~~V~gvD~s~-~al~~Ar~n~~~ngl~~~~~v~~~~~D~  284 (375)
T 4dcm_A          223 EGEIVDLGCGNGVIGLTLLDK-----------------NPQAKVVFVDESP-MAVASSRLNVETNMPEALDRCEFMINNA  284 (375)
T ss_dssp             CSEEEEETCTTCHHHHHHHHH-----------------CTTCEEEEEESCH-HHHHHHHHHHHHHCGGGGGGEEEEECST
T ss_pred             CCeEEEEeCcchHHHHHHHHH-----------------CCCCEEEEEECcH-HHHHHHHHHHHHcCCCcCceEEEEechh
Confidence            379999999999999887542                 1234455555421 11111111 1100   011123344555


Q ss_pred             ccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeE
Q 044174          106 HHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMM  185 (332)
Q Consensus       106 y~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~m  185 (332)
                      +. .+|++++|+|+|+-.+|+...++...                                 ...+|+.-.+-|+|||++
T Consensus       285 ~~-~~~~~~fD~Ii~nppfh~~~~~~~~~---------------------------------~~~~l~~~~~~LkpgG~l  330 (375)
T 4dcm_A          285 LS-GVEPFRFNAVLCNPPFHQQHALTDNV---------------------------------AWEMFHHARRCLKINGEL  330 (375)
T ss_dssp             TT-TCCTTCEEEEEECCCC-------CCH---------------------------------HHHHHHHHHHHEEEEEEE
T ss_pred             hc-cCCCCCeeEEEECCCcccCcccCHHH---------------------------------HHHHHHHHHHhCCCCcEE
Confidence            55 46888999999999999854433211                                 113566666778999999


Q ss_pred             EEEe
Q 044174          186 VIIM  189 (332)
Q Consensus       186 vl~~  189 (332)
                      +++.
T Consensus       331 ~iv~  334 (375)
T 4dcm_A          331 YIVA  334 (375)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9975

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=97.60  E-value=0.00019  Score=67.33  Aligned_cols=158  Identities=20%  Similarity=0.194  Sum_probs=84.4

Q ss_pred             HHHHHHHHhhhhcccCCCCCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhc
Q 044174           10 KIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTS   89 (332)
Q Consensus        10 ~l~~ai~~~~~~~~~~~~~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~   89 (332)
                      .|++++...- .     .....+|+|+|||+|..|..+++.                  ..-+|+--|+-.+=-..-.+.
T Consensus        72 Kl~~~l~~~~-~-----~~~g~~vLDiGcGTG~~t~~L~~~------------------ga~~V~aVDvs~~mL~~a~r~  127 (291)
T 3hp7_A           72 KLEKALAVFN-L-----SVEDMITIDIGASTGGFTDVMLQN------------------GAKLVYAVDVGTNQLVWKLRQ  127 (291)
T ss_dssp             HHHHHHHHTT-C-----CCTTCEEEEETCTTSHHHHHHHHT------------------TCSEEEEECSSSSCSCHHHHT
T ss_pred             HHHHHHHhcC-C-----CccccEEEecCCCccHHHHHHHhC------------------CCCEEEEEECCHHHHHHHHHh
Confidence            4566665432 1     234579999999999999776542                  012445555533211110111


Q ss_pred             CcccccceeeecCCcc---ccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHH
Q 044174           90 LPQQREYYSAGVPGSF---HHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAK  166 (332)
Q Consensus        90 l~~~~~~f~~~vpgSF---y~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~  166 (332)
                      -+.   +-.. -...+   -..-+|..++|++.+..++|||.+                                     
T Consensus       128 ~~r---v~~~-~~~ni~~l~~~~l~~~~fD~v~~d~sf~sl~~-------------------------------------  166 (291)
T 3hp7_A          128 DDR---VRSM-EQYNFRYAEPVDFTEGLPSFASIDVSFISLNL-------------------------------------  166 (291)
T ss_dssp             CTT---EEEE-CSCCGGGCCGGGCTTCCCSEEEECCSSSCGGG-------------------------------------
T ss_pred             Ccc---ccee-cccCceecchhhCCCCCCCEEEEEeeHhhHHH-------------------------------------
Confidence            111   0000 00000   011256678999999999998733                                     


Q ss_pred             HHHHHHHHHHHhhccCCeEEEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHH
Q 044174          167 DMENFLNARAEEIVSGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKL  246 (332)
Q Consensus       167 d~~~fL~~Ra~EL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~  246 (332)
                          .|..-++-|+|||++++.+--.-+... .  ..+              ..|.+...       -.+..+.+++.+.
T Consensus       167 ----vL~e~~rvLkpGG~lv~lvkPqfe~~~-~--~~~--------------~~G~vrd~-------~~~~~~~~~v~~~  218 (291)
T 3hp7_A          167 ----ILPALAKILVDGGQVVALVKPQFEAGR-E--QIG--------------KNGIVRES-------SIHEKVLETVTAF  218 (291)
T ss_dssp             ----THHHHHHHSCTTCEEEEEECGGGTSCG-G--GCC---------------CCCCCCH-------HHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHcCcCCEEEEEECcccccCh-h--hcC--------------CCCccCCH-------HHHHHHHHHHHHH
Confidence                233334678899999997411000000 0  000              12433211       1244578999999


Q ss_pred             HHhCCceEEeEEEEe
Q 044174          247 VDKNGHFSIKTVELT  261 (332)
Q Consensus       247 ie~~G~F~I~~le~~  261 (332)
                      ++..| |.+..+..-
T Consensus       219 ~~~~G-f~v~~~~~s  232 (291)
T 3hp7_A          219 AVDYG-FSVKGLDFS  232 (291)
T ss_dssp             HHHTT-EEEEEEEEC
T ss_pred             HHHCC-CEEEEEEEC
Confidence            99999 998887654

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=97.58  E-value=0.00018  Score=68.01  Aligned_cols=102  Identities=18%  Similarity=0.212  Sum_probs=62.6

Q ss_pred             ceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccc--cceeeecCCcccc
Q 044174           30 IIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQR--EYYSAGVPGSFHH  107 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~--~~f~~~vpgSFy~  107 (332)
                      ..+|+|+|||+|..++.+++.                  +.-+|+--|..  +.....+......  .--+.-+.|.+.+
T Consensus        39 ~~~VLDiGcGtG~ls~~la~~------------------g~~~v~~vD~s--~~~~~a~~~~~~~~~~~~i~~~~~d~~~   98 (328)
T 1g6q_1           39 DKIVLDVGCGTGILSMFAAKH------------------GAKHVIGVDMS--SIIEMAKELVELNGFSDKITLLRGKLED   98 (328)
T ss_dssp             TCEEEEETCTTSHHHHHHHHT------------------CCSEEEEEESS--THHHHHHHHHHHTTCTTTEEEEESCTTT
T ss_pred             CCEEEEecCccHHHHHHHHHC------------------CCCEEEEEChH--HHHHHHHHHHHHcCCCCCEEEEECchhh
Confidence            469999999999988765421                  11356777764  3444333321111  1112334555655


Q ss_pred             CCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEE
Q 044174          108 RLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMV  186 (332)
Q Consensus       108 ~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mv  186 (332)
                      -.+|.+++|+++|....+.+...                                   .++..+|+.+.+-|+|||+++
T Consensus        99 ~~~~~~~~D~Ivs~~~~~~l~~~-----------------------------------~~~~~~l~~~~~~LkpgG~li  142 (328)
T 1g6q_1           99 VHLPFPKVDIIISEWMGYFLLYE-----------------------------------SMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             SCCSSSCEEEEEECCCBTTBSTT-----------------------------------CCHHHHHHHHHHHEEEEEEEE
T ss_pred             ccCCCCcccEEEEeCchhhcccH-----------------------------------HHHHHHHHHHHhhcCCCeEEE
Confidence            56788999999997544432211                                   123457888889999999997

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=97.56  E-value=0.00053  Score=67.69  Aligned_cols=23  Identities=26%  Similarity=0.368  Sum_probs=19.3

Q ss_pred             CCceEEEeecCCCCcchHHHHHH
Q 044174           28 SNIIRLADLGCAVGSNTINAMQD   50 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~   50 (332)
                      ....+|+|+|||+|..++.++..
T Consensus       241 ~~g~~VLDLGCGsG~la~~LA~~  263 (433)
T 1u2z_A          241 KKGDTFMDLGSGVGNCVVQAALE  263 (433)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHH
Confidence            44579999999999999988753

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=97.54  E-value=0.00014  Score=67.57  Aligned_cols=48  Identities=10%  Similarity=0.293  Sum_probs=33.6

Q ss_pred             ccccCCcC-CCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 044174          104 SFHHRLFP-QSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSG  182 (332)
Q Consensus       104 SFy~~lfP-~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pG  182 (332)
                      ...+..|| .+++|+|+|.+.|||+..  +                                  +....|+.=++-|+||
T Consensus       202 dl~~~~~~~~~~fDlI~crnvliyf~~--~----------------------------------~~~~vl~~~~~~L~pg  245 (274)
T 1af7_A          202 NLLEKQYNVPGPFDAIFCRNVMIYFDK--T----------------------------------TQEDILRRFVPLLKPD  245 (274)
T ss_dssp             CTTCSSCCCCCCEEEEEECSSGGGSCH--H----------------------------------HHHHHHHHHGGGEEEE
T ss_pred             ccCCCCCCcCCCeeEEEECCchHhCCH--H----------------------------------HHHHHHHHHHHHhCCC
Confidence            33443355 578999999999999743  1                                  1234556666889999


Q ss_pred             CeEEE
Q 044174          183 GMMVI  187 (332)
Q Consensus       183 G~mvl  187 (332)
                      |.|++
T Consensus       246 G~L~l  250 (274)
T 1af7_A          246 GLLFA  250 (274)
T ss_dssp             EEEEE
T ss_pred             cEEEE
Confidence            99987

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=97.54  E-value=0.00034  Score=61.79  Aligned_cols=22  Identities=23%  Similarity=0.240  Sum_probs=17.8

Q ss_pred             CCceEEEeecCCCCcchHHHHH
Q 044174           28 SNIIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~   49 (332)
                      .+..+|+|+|||+|..+..+.+
T Consensus        56 ~~g~~VLDlGcGtG~~~~~la~   77 (210)
T 1nt2_A           56 RGDERVLYLGAASGTTVSHLAD   77 (210)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHH
T ss_pred             CCCCEEEEECCcCCHHHHHHHH
Confidence            3457999999999998877654

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=97.53  E-value=0.00034  Score=62.73  Aligned_cols=23  Identities=13%  Similarity=0.216  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHhhccCCeEEEE
Q 044174          166 KDMENFLNARAEEIVSGGMMVII  188 (332)
Q Consensus       166 ~d~~~fL~~Ra~EL~pGG~mvl~  188 (332)
                      .|...||+.-++-|||||+|++.
T Consensus       147 ~~~~~~~~e~~rvLkPGG~l~f~  169 (236)
T 3orh_A          147 HQFNFIKNHAFRLLKPGGVLTYC  169 (236)
T ss_dssp             HHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             cchhhhhhhhhheeCCCCEEEEE
Confidence            35667777778899999999764

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=97.52  E-value=0.00043  Score=60.94  Aligned_cols=22  Identities=14%  Similarity=0.228  Sum_probs=18.2

Q ss_pred             CCceEEEeecCCCCcchHHHHH
Q 044174           28 SNIIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~   49 (332)
                      ....+|+|+|||+|..+..+..
T Consensus        69 ~~~~~vLdiG~G~G~~~~~l~~   90 (231)
T 1vbf_A           69 HKGQKVLEIGTGIGYYTALIAE   90 (231)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHH
T ss_pred             CCCCEEEEEcCCCCHHHHHHHH
Confidence            3356999999999999988764

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=97.51  E-value=0.0012  Score=58.40  Aligned_cols=23  Identities=13%  Similarity=0.193  Sum_probs=18.8

Q ss_pred             CCceEEEeecCCCCcchHHHHHH
Q 044174           28 SNIIRLADLGCAVGSNTINAMQD   50 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~   50 (332)
                      .+..+|+|+|||+|..++.+.+.
T Consensus        73 ~~~~~VLDlGcG~G~~~~~la~~   95 (230)
T 1fbn_A           73 KRDSKILYLGASAGTTPSHVADI   95 (230)
T ss_dssp             CTTCEEEEESCCSSHHHHHHHHH
T ss_pred             CCCCEEEEEcccCCHHHHHHHHH
Confidence            34579999999999999887654

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=97.46  E-value=0.00029  Score=59.39  Aligned_cols=21  Identities=24%  Similarity=0.409  Sum_probs=17.6

Q ss_pred             CCceEEEeecCCCCcchHHHH
Q 044174           28 SNIIRLADLGCAVGSNTINAM   48 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~   48 (332)
                      ....+|+|+|||+|..++.+.
T Consensus        32 ~~~~~vldiG~G~G~~~~~l~   52 (192)
T 1l3i_A           32 GKNDVAVDVGCGTGGVTLELA   52 (192)
T ss_dssp             CTTCEEEEESCTTSHHHHHHH
T ss_pred             CCCCEEEEECCCCCHHHHHHH
Confidence            345799999999999988775

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=97.45  E-value=0.00031  Score=66.11  Aligned_cols=77  Identities=9%  Similarity=0.057  Sum_probs=22.8

Q ss_pred             HHHHHHhhccCCeEEEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhh--ccchhhhcccCcCccc----CCHHHHHH
Q 044174          172 LNARAEEIVSGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQ--LITEAELDSFNLPIYS----ASSEEMVK  245 (332)
Q Consensus       172 L~~Ra~EL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eG--li~~e~~d~fn~P~y~----ps~~E~~~  245 (332)
                      |..-.+-|+|||++++.....               +.+...+..|...+  +..+.......-.|..    +...+|.+
T Consensus       202 l~~~~~~LkpgG~lv~~~~~~---------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~~~~~~~~g~y~~  266 (336)
T 2b25_A          202 LPVFYPHLKHGGVCAVYVVNI---------------TQVIELLDGIRTCELALSCEKISEVIVRDWLVCLAKQKNGILAQ  266 (336)
T ss_dssp             HHHHGGGEEEEEEEEEEESSH---------------HHHHHHHHHHHHHTCCEEEEEEECCCCCCEEECC----------
T ss_pred             HHHHHHhcCCCcEEEEEeCCH---------------HHHHHHHHHHHhcCCCcccceEEEecccceEEEeecccccchhh
Confidence            344457889999999877431               13333444443322  1111111112223332    23349999


Q ss_pred             HHHhCCceEEeEEEEeCCC
Q 044174          246 LVDKNGHFSIKTVELTNPT  264 (332)
Q Consensus       246 ~ie~~G~F~I~~le~~~p~  264 (332)
                      .++++| |++.+++...+.
T Consensus       267 ~l~~aG-F~~v~~~~~~~~  284 (336)
T 2b25_A          267 KVESKI-NTDVQLDSQEKI  284 (336)
T ss_dssp             -------------------
T ss_pred             hhcccc-cccccccccccc
Confidence            999999 998877755443

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=97.44  E-value=0.0012  Score=56.62  Aligned_cols=117  Identities=15%  Similarity=0.164  Sum_probs=60.3

Q ss_pred             CceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccc-cceeeecCCcccc
Q 044174           29 NIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQR-EYYSAGVPGSFHH  107 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~-~~f~~~vpgSFy~  107 (332)
                      ...+|+|+|||+|..++.+++..        .        |.-+|+..|.-..=....=+.+.... .--+.-+-+++..
T Consensus        22 ~~~~vLDlGcG~G~~~~~l~~~~--------~--------~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~   85 (197)
T 3eey_A           22 EGDTVVDATCGNGNDTAFLASLV--------G--------ENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQN   85 (197)
T ss_dssp             TTCEEEESCCTTSHHHHHHHHHH--------C--------TTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGG
T ss_pred             CCCEEEEcCCCCCHHHHHHHHHh--------C--------CCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHH
Confidence            34699999999999988776531        0        11244444432211111111111100 0112233444433


Q ss_pred             CC-cCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEE
Q 044174          108 RL-FPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMV  186 (332)
Q Consensus       108 ~l-fP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mv  186 (332)
                      -. ++++++|+++++..+     .|..  +        +.+. .  .           ..+...+|+.-.+-|+|||+++
T Consensus        86 ~~~~~~~~fD~v~~~~~~-----~~~~--~--------~~~~-~--~-----------~~~~~~~l~~~~~~Lk~gG~l~  136 (197)
T 3eey_A           86 MDKYIDCPVKAVMFNLGY-----LPSG--D--------HSIS-T--R-----------PETTIQALSKAMELLVTGGIIT  136 (197)
T ss_dssp             GGGTCCSCEEEEEEEESB-----CTTS--C--------TTCB-C--C-----------HHHHHHHHHHHHHHEEEEEEEE
T ss_pred             HhhhccCCceEEEEcCCc-----ccCc--c--------cccc-c--C-----------cccHHHHHHHHHHhCcCCCEEE
Confidence            32 566899999997655     1211  0        0010 0  0           0133446777778899999999


Q ss_pred             EEec
Q 044174          187 IIMP  190 (332)
Q Consensus       187 l~~~  190 (332)
                      +...
T Consensus       137 ~~~~  140 (197)
T 3eey_A          137 VVIY  140 (197)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            8864

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=97.44  E-value=0.00062  Score=59.21  Aligned_cols=82  Identities=10%  Similarity=0.010  Sum_probs=43.6

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhc-Ccc--cccceeeecCCc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTS-LPQ--QREYYSAGVPGS  104 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~-l~~--~~~~f~~~vpgS  104 (332)
                      ....+|+|+|||+|..+..+....                .|..+|+..|.-. +.-...+. +..  ..+  +.-+.+.
T Consensus        76 ~~~~~vLdiG~G~G~~~~~l~~~~----------------~~~~~v~~vD~~~-~~~~~a~~~~~~~~~~~--v~~~~~d  136 (215)
T 2yxe_A           76 KPGMKVLEIGTGCGYHAAVTAEIV----------------GEDGLVVSIERIP-ELAEKAERTLRKLGYDN--VIVIVGD  136 (215)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHH----------------CTTSEEEEEESCH-HHHHHHHHHHHHHTCTT--EEEEESC
T ss_pred             CCCCEEEEECCCccHHHHHHHHHh----------------CCCCEEEEEeCCH-HHHHHHHHHHHHcCCCC--eEEEECC
Confidence            345699999999999998775432                0112344444321 11111111 100  011  2223344


Q ss_pred             cccCCcCCCceeEEEecCcccccc
Q 044174          105 FHHRLFPQSSIHFAHCSYALHWLS  128 (332)
Q Consensus       105 Fy~~lfP~~svd~~~S~~alHWLs  128 (332)
                      +...+.+.+++|+++++.++|++.
T Consensus       137 ~~~~~~~~~~fD~v~~~~~~~~~~  160 (215)
T 2yxe_A          137 GTLGYEPLAPYDRIYTTAAGPKIP  160 (215)
T ss_dssp             GGGCCGGGCCEEEEEESSBBSSCC
T ss_pred             cccCCCCCCCeeEEEECCchHHHH
Confidence            433333367899999999999853

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=97.43  E-value=7.9e-05  Score=66.00  Aligned_cols=70  Identities=9%  Similarity=0.126  Sum_probs=46.1

Q ss_pred             CCceEEEeecCCCCcchHHHH--------------HHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCccc
Q 044174           28 SNIIRLADLGCAVGSNTINAM--------------QDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQ   93 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~--------------~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~   93 (332)
                      +.+-+|+|+|||+|+.++.++              ...++..++.....+.   .-.+.+  .|+               
T Consensus        48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~---~~~v~~--~d~---------------  107 (200)
T 3fzg_A           48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKT---TIKYRF--LNK---------------  107 (200)
T ss_dssp             CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCC---SSEEEE--ECC---------------
T ss_pred             CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCC---CccEEE--ecc---------------
Confidence            446799999999999999985              3456655555443321   001221  222               


Q ss_pred             ccceeeecCCccccCCcCCCceeEEEecCccccccCC
Q 044174           94 REYYSAGVPGSFHHRLFPQSSIHFAHCSYALHWLSKV  130 (332)
Q Consensus        94 ~~~f~~~vpgSFy~~lfP~~svd~~~S~~alHWLs~~  130 (332)
                                  -. ..|..++|++.++..+|-|.+.
T Consensus       108 ------------~~-~~~~~~~DvVLa~k~LHlL~~~  131 (200)
T 3fzg_A          108 ------------ES-DVYKGTYDVVFLLKMLPVLKQQ  131 (200)
T ss_dssp             ------------HH-HHTTSEEEEEEEETCHHHHHHT
T ss_pred             ------------cc-cCCCCCcChhhHhhHHHhhhhh
Confidence                        11 1477899999999999999443

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=97.42  E-value=0.00017  Score=61.73  Aligned_cols=118  Identities=17%  Similarity=0.116  Sum_probs=65.4

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeec-CCccc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGV-PGSFH  106 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~v-pgSFy  106 (332)
                      ....+|+|+|||+|..++.+.+..        ...+.....+.-+|+-.|+-..-      .++   .  +..+ .+.+.
T Consensus        21 ~~~~~vLDlGcG~G~~~~~la~~~--------~~~~~~~~~~~~~v~~vD~s~~~------~~~---~--~~~~~~~d~~   81 (196)
T 2nyu_A           21 RPGLRVLDCGAAPGAWSQVAVQKV--------NAAGTDPSSPVGFVLGVDLLHIF------PLE---G--ATFLCPADVT   81 (196)
T ss_dssp             CTTCEEEEETCCSCHHHHHHHHHT--------TTTCCCTTSCCCEEEEECSSCCC------CCT---T--CEEECSCCTT
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHh--------ccccccccCCCceEEEEechhcc------cCC---C--CeEEEeccCC
Confidence            345799999999999998775431        10000011233567777765420      011   1  1112 33333


Q ss_pred             cC--------CcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044174          107 HR--------LFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEE  178 (332)
Q Consensus       107 ~~--------lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~E  178 (332)
                      ..        .+|++++|+++|+.++||.-..   ..+                 +       .........+|+.-.+-
T Consensus        82 ~~~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~---~~~-----------------~-------~~~~~~~~~~l~~~~~~  134 (196)
T 2nyu_A           82 DPRTSQRILEVLPGRRADVILSDMAPNATGFR---DLD-----------------H-------DRLISLCLTLLSVTPDI  134 (196)
T ss_dssp             SHHHHHHHHHHSGGGCEEEEEECCCCCCCSCH---HHH-----------------H-------HHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhcCCCCCcEEEeCCCCCCCCCc---ccC-----------------H-------HHHHHHHHHHHHHHHHH
Confidence            22        2567899999998777763210   000                 0       01112234566666788


Q ss_pred             hccCCeEEEEecc
Q 044174          179 IVSGGMMVIIMPG  191 (332)
Q Consensus       179 L~pGG~mvl~~~g  191 (332)
                      |+|||+|++....
T Consensus       135 LkpgG~lv~~~~~  147 (196)
T 2nyu_A          135 LQPGGTFLCKTWA  147 (196)
T ss_dssp             EEEEEEEEEEECC
T ss_pred             hcCCCEEEEEecC
Confidence            9999999998653

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=97.40  E-value=0.00023  Score=67.50  Aligned_cols=106  Identities=11%  Similarity=0.163  Sum_probs=62.7

Q ss_pred             eEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhc-CcccccceeeecCCccccCC
Q 044174           31 IRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTS-LPQQREYYSAGVPGSFHHRL  109 (332)
Q Consensus        31 ~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~-l~~~~~~f~~~vpgSFy~~l  109 (332)
                      -+|+|+|||+|..++.+...                 .|..+|+..|.... .-...+. +... ..-...+.+.+..  
T Consensus       198 ~~VLDlGcG~G~~~~~la~~-----------------~~~~~v~~vD~s~~-~l~~a~~~~~~~-~~~~~~~~~d~~~--  256 (343)
T 2pjd_A          198 GKVLDVGCGAGVLSVAFARH-----------------SPKIRLTLCDVSAP-AVEASRATLAAN-GVEGEVFASNVFS--  256 (343)
T ss_dssp             SBCCBTTCTTSHHHHHHHHH-----------------CTTCBCEEEESBHH-HHHHHHHHHHHT-TCCCEEEECSTTT--
T ss_pred             CeEEEecCccCHHHHHHHHH-----------------CCCCEEEEEECCHH-HHHHHHHHHHHh-CCCCEEEEccccc--
Confidence            48999999999999877532                 12234444443211 0111111 1100 0001113445544  


Q ss_pred             cCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEe
Q 044174          110 FPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIM  189 (332)
Q Consensus       110 fP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~~  189 (332)
                      ++++++|+++|+..+||...                                 ....+...+|+.-.+-|+|||++++..
T Consensus       257 ~~~~~fD~Iv~~~~~~~g~~---------------------------------~~~~~~~~~l~~~~~~LkpgG~l~i~~  303 (343)
T 2pjd_A          257 EVKGRFDMIISNPPFHDGMQ---------------------------------TSLDAAQTLIRGAVRHLNSGGELRIVA  303 (343)
T ss_dssp             TCCSCEEEEEECCCCCSSSH---------------------------------HHHHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             cccCCeeEEEECCCcccCcc---------------------------------CCHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence            34789999999999998321                                 112356678888889999999999976


Q ss_pred             c
Q 044174          190 P  190 (332)
Q Consensus       190 ~  190 (332)
                      .
T Consensus       304 ~  304 (343)
T 2pjd_A          304 N  304 (343)
T ss_dssp             E
T ss_pred             c
Confidence            3

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=97.40  E-value=0.00074  Score=61.44  Aligned_cols=25  Identities=24%  Similarity=0.448  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHhhccCCeEEEEecc
Q 044174          167 DMENFLNARAEEIVSGGMMVIIMPG  191 (332)
Q Consensus       167 d~~~fL~~Ra~EL~pGG~mvl~~~g  191 (332)
                      ++..||+.=++-|+|||+|+++...
T Consensus       148 ~~~~~l~~~~~~LkpgG~l~~~~~~  172 (260)
T 2ozv_A          148 LFEDWIRTASAIMVSGGQLSLISRP  172 (260)
T ss_dssp             CHHHHHHHHHHHEEEEEEEEEEECG
T ss_pred             CHHHHHHHHHHHcCCCCEEEEEEcH
Confidence            4677888888999999999998743

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=97.38  E-value=0.00096  Score=65.33  Aligned_cols=126  Identities=13%  Similarity=0.191  Sum_probs=72.5

Q ss_pred             CCceEEEeecCC------CCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeec
Q 044174           28 SNIIRLADLGCA------VGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGV  101 (332)
Q Consensus        28 ~~~~~iaD~GCs------~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~v  101 (332)
                      .++.+|+|+|||      +|..|+.++..       .         .|..+|+--|+-.+-   .+    ...+  +.-+
T Consensus       215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~-------~---------fP~a~V~GVDiSp~m---~~----~~~r--I~fv  269 (419)
T 3sso_A          215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKS-------F---------FPRGQIYGLDIMDKS---HV----DELR--IRTI  269 (419)
T ss_dssp             TSCCEEEEECCSCTTCSSCCCHHHHHHHH-------H---------CTTCEEEEEESSCCG---GG----CBTT--EEEE
T ss_pred             CCCCEEEEEecCCCcCCCCCHHHHHHHHH-------h---------CCCCEEEEEECCHHH---hh----cCCC--cEEE
Confidence            446899999999      78888776442       1         123466666664441   11    1111  2223


Q ss_pred             CCccccCCcC------CCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHH
Q 044174          102 PGSFHHRLFP------QSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNAR  175 (332)
Q Consensus       102 pgSFy~~lfP------~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~R  175 (332)
                      -|+..+.-|+      ++++|+|+|..+ ||.                                      .|+..+|+.=
T Consensus       270 ~GDa~dlpf~~~l~~~d~sFDlVisdgs-H~~--------------------------------------~d~~~aL~el  310 (419)
T 3sso_A          270 QGDQNDAEFLDRIARRYGPFDIVIDDGS-HIN--------------------------------------AHVRTSFAAL  310 (419)
T ss_dssp             ECCTTCHHHHHHHHHHHCCEEEEEECSC-CCH--------------------------------------HHHHHHHHHH
T ss_pred             EecccccchhhhhhcccCCccEEEECCc-ccc--------------------------------------hhHHHHHHHH
Confidence            3455444455      689999999765 541                                      1334466666


Q ss_pred             HHhhccCCeEEEEecccCCCCCCC-----CcchhHHHHHHHHHHHHH
Q 044174          176 AEEIVSGGMMVIIMPGIPYGMPYS-----HLTNGVMYDLMATIFMEL  217 (332)
Q Consensus       176 a~EL~pGG~mvl~~~gr~~~~~~~-----~~~~~~~~~~l~~al~~m  217 (332)
                      .+-|||||++++.-.-........     ......+.+.++..+.++
T Consensus       311 ~rvLKPGGvlVi~Dl~tsy~p~f~G~~~~~~~~~tii~~lk~l~D~l  357 (419)
T 3sso_A          311 FPHVRPGGLYVIEDMWTAYWPGFGGQADPQECSGTSLGLLKSLIDAI  357 (419)
T ss_dssp             GGGEEEEEEEEEECGGGGGCTBTTCCSSTTCCTTSHHHHHHHHHHHH
T ss_pred             HHhcCCCeEEEEEecccccCcccCCCccCCcchhHHHHHHHHHHHHh
Confidence            688999999999754321110000     002244566777777766

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=97.36  E-value=0.00036  Score=58.80  Aligned_cols=20  Identities=35%  Similarity=0.287  Sum_probs=17.0

Q ss_pred             CceEEEeecCCCCcchHHHH
Q 044174           29 NIIRLADLGCAVGSNTINAM   48 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~   48 (332)
                      ..-+|+|+|||+|..++.++
T Consensus        31 ~~~~vLDlGcG~G~~~~~l~   50 (177)
T 2esr_A           31 NGGRVLDLFAGSGGLAIEAV   50 (177)
T ss_dssp             CSCEEEEETCTTCHHHHHHH
T ss_pred             CCCeEEEeCCCCCHHHHHHH
Confidence            35699999999999998765

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=97.35  E-value=0.00076  Score=60.98  Aligned_cols=126  Identities=10%  Similarity=0.069  Sum_probs=61.7

Q ss_pred             CceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccc-cceeeecCCcccc
Q 044174           29 NIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQR-EYYSAGVPGSFHH  107 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~-~~f~~~vpgSFy~  107 (332)
                      ...+|+|+|||+|..++.+.+.                 .+. +|+..|.-..=....-+++.... .--+..+-+++.+
T Consensus        49 ~~~~vLDlG~G~G~~~~~la~~-----------------~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~  110 (259)
T 3lpm_A           49 RKGKIIDLCSGNGIIPLLLSTR-----------------TKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKK  110 (259)
T ss_dssp             SCCEEEETTCTTTHHHHHHHTT-----------------CCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGG
T ss_pred             CCCEEEEcCCchhHHHHHHHHh-----------------cCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHH
Confidence            4679999999999988876421                 011 44444442211111111111000 0012223344433


Q ss_pred             CC--cCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeE
Q 044174          108 RL--FPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMM  185 (332)
Q Consensus       108 ~l--fP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~m  185 (332)
                      -.  +|++++|+|+|+-.++.....-  ..+                +......-......++..+|+.=++-|+|||++
T Consensus       111 ~~~~~~~~~fD~Ii~npPy~~~~~~~--~~~----------------~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l  172 (259)
T 3lpm_A          111 ITDLIPKERADIVTCNPPYFATPDTS--LKN----------------TNEHFRIARHEVMCTLEDTIRVAASLLKQGGKA  172 (259)
T ss_dssp             GGGTSCTTCEEEEEECCCC-----------------------------------------HHHHHHHHHHHHHEEEEEEE
T ss_pred             hhhhhccCCccEEEECCCCCCCcccc--CCC----------------CchHHHhhhccccCCHHHHHHHHHHHccCCcEE
Confidence            22  5789999999975554431100  000                000000001112356778888888999999999


Q ss_pred             EEEec
Q 044174          186 VIIMP  190 (332)
Q Consensus       186 vl~~~  190 (332)
                      ++...
T Consensus       173 ~~~~~  177 (259)
T 3lpm_A          173 NFVHR  177 (259)
T ss_dssp             EEEEC
T ss_pred             EEEEc
Confidence            99763

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=97.34  E-value=0.00092  Score=59.35  Aligned_cols=22  Identities=14%  Similarity=0.134  Sum_probs=18.0

Q ss_pred             CceEEEeecCCCCcchHHHHHH
Q 044174           29 NIIRLADLGCAVGSNTINAMQD   50 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~~   50 (332)
                      ...+|+|+|||+|..++.+...
T Consensus        91 ~~~~vLdiG~G~G~~~~~la~~  112 (235)
T 1jg1_A           91 PGMNILEVGTGSGWNAALISEI  112 (235)
T ss_dssp             TTCCEEEECCTTSHHHHHHHHH
T ss_pred             CCCEEEEEeCCcCHHHHHHHHH
Confidence            3468999999999999887653

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=97.34  E-value=0.0015  Score=58.29  Aligned_cols=76  Identities=14%  Similarity=-0.006  Sum_probs=42.8

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcC-cccc-cceeeecCCcc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSL-PQQR-EYYSAGVPGSF  105 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l-~~~~-~~f~~~vpgSF  105 (332)
                      ....+|+|+|||+|..++.++..+                .|..+|+..|.-. +.-...+.. .... .-.+..+-+++
T Consensus        92 ~~~~~vldiG~G~G~~~~~l~~~~----------------~~~~~v~~~D~~~-~~~~~a~~~~~~~~~~~~v~~~~~d~  154 (255)
T 3mb5_A           92 SPGDFIVEAGVGSGALTLFLANIV----------------GPEGRVVSYEIRE-DFAKLAWENIKWAGFDDRVTIKLKDI  154 (255)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHH----------------CTTSEEEEECSCH-HHHHHHHHHHHHHTCTTTEEEECSCG
T ss_pred             CCCCEEEEecCCchHHHHHHHHHh----------------CCCeEEEEEecCH-HHHHHHHHHHHHcCCCCceEEEECch
Confidence            345799999999999998875432                1223455555422 122222211 1000 11234455666


Q ss_pred             ccCCcCCCceeEEEec
Q 044174          106 HHRLFPQSSIHFAHCS  121 (332)
Q Consensus       106 y~~lfP~~svd~~~S~  121 (332)
                      .+ .+|++++|+++++
T Consensus       155 ~~-~~~~~~~D~v~~~  169 (255)
T 3mb5_A          155 YE-GIEEENVDHVILD  169 (255)
T ss_dssp             GG-CCCCCSEEEEEEC
T ss_pred             hh-ccCCCCcCEEEEC
Confidence            63 4888999999983

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=97.33  E-value=0.00061  Score=56.54  Aligned_cols=21  Identities=19%  Similarity=0.099  Sum_probs=17.5

Q ss_pred             CceEEEeecCCCCcchHHHHH
Q 044174           29 NIIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~   49 (332)
                      +.-+|+|+|||+|..++.+.+
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~   61 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAAS   61 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHH
T ss_pred             CCCeEEEeCCCcCHHHHHHHH
Confidence            356899999999999987753

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=97.32  E-value=0.00024  Score=62.47  Aligned_cols=87  Identities=10%  Similarity=-0.021  Sum_probs=45.7

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhc-Ccccc-----cceeeec
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTS-LPQQR-----EYYSAGV  101 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~-l~~~~-----~~f~~~v  101 (332)
                      ....+|+|+|||+|..++.+....        ..    ...|..+|+-.|.-. +.-...+. +....     .--+..+
T Consensus        79 ~~~~~VLdiG~G~G~~~~~la~~~--------~~----~~~~~~~v~~vD~~~-~~~~~a~~~~~~~~~~~~~~~~v~~~  145 (227)
T 2pbf_A           79 KPGSRAIDVGSGSGYLTVCMAIKM--------NV----LENKNSYVIGLERVK-DLVNFSLENIKRDKPELLKIDNFKII  145 (227)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHT--------TT----TTCTTCEEEEEESCH-HHHHHHHHHHHHHCGGGGSSTTEEEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHh--------cc----cCCCCCEEEEEeCCH-HHHHHHHHHHHHcCccccccCCEEEE
Confidence            335799999999999887765421        00    001334555555422 11111111 11000     0012223


Q ss_pred             CCccccCC----cCCCceeEEEecCccccc
Q 044174          102 PGSFHHRL----FPQSSIHFAHCSYALHWL  127 (332)
Q Consensus       102 pgSFy~~l----fP~~svd~~~S~~alHWL  127 (332)
                      -+....-+    ++.+++|++++..++|++
T Consensus       146 ~~d~~~~~~~~~~~~~~fD~I~~~~~~~~~  175 (227)
T 2pbf_A          146 HKNIYQVNEEEKKELGLFDAIHVGASASEL  175 (227)
T ss_dssp             ECCGGGCCHHHHHHHCCEEEEEECSBBSSC
T ss_pred             ECChHhcccccCccCCCcCEEEECCchHHH
Confidence            44554444    556789999999998863

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=97.29  E-value=0.00063  Score=59.30  Aligned_cols=19  Identities=21%  Similarity=0.018  Sum_probs=16.5

Q ss_pred             ceEEEeecCCCCcchHHHH
Q 044174           30 IIRLADLGCAVGSNTINAM   48 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~   48 (332)
                      ..+|+|+|||+|..++.++
T Consensus        54 ~~~vLDlGcGtG~~~~~~~   72 (201)
T 2ift_A           54 QSECLDGFAGSGSLGFEAL   72 (201)
T ss_dssp             TCEEEETTCTTCHHHHHHH
T ss_pred             CCeEEEcCCccCHHHHHHH
Confidence            4689999999999998765

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=97.28  E-value=0.00046  Score=58.28  Aligned_cols=20  Identities=25%  Similarity=0.117  Sum_probs=17.0

Q ss_pred             CceEEEeecCCCCcchHHHH
Q 044174           29 NIIRLADLGCAVGSNTINAM   48 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~   48 (332)
                      ...+|+|+|||+|..++.++
T Consensus        44 ~~~~vLD~GcG~G~~~~~~~   63 (187)
T 2fhp_A           44 DGGMALDLYSGSGGLAIEAV   63 (187)
T ss_dssp             SSCEEEETTCTTCHHHHHHH
T ss_pred             CCCCEEEeCCccCHHHHHHH
Confidence            35699999999999998765

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=97.27  E-value=0.0013  Score=59.17  Aligned_cols=73  Identities=21%  Similarity=0.178  Sum_probs=40.3

Q ss_pred             CceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCccccC
Q 044174           29 NIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHR  108 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~~  108 (332)
                      ...+|+|+|||+|..+..+.+..                 +..+|+--|.-.+ .-...+....  +  +..+.+++..-
T Consensus        85 ~~~~vLdiG~G~G~~~~~l~~~~-----------------~~~~v~~vD~s~~-~~~~a~~~~~--~--~~~~~~d~~~~  142 (269)
T 1p91_A           85 KATAVLDIGCGEGYYTHAFADAL-----------------PEITTFGLDVSKV-AIKAAAKRYP--Q--VTFCVASSHRL  142 (269)
T ss_dssp             TCCEEEEETCTTSTTHHHHHHTC-----------------TTSEEEEEESCHH-HHHHHHHHCT--T--SEEEECCTTSC
T ss_pred             CCCEEEEECCCCCHHHHHHHHhC-----------------CCCeEEEEeCCHH-HHHHHHHhCC--C--cEEEEcchhhC
Confidence            45799999999999997764421                 1124444443221 1111111111  1  11233444444


Q ss_pred             CcCCCceeEEEecCc
Q 044174          109 LFPQSSIHFAHCSYA  123 (332)
Q Consensus       109 lfP~~svd~~~S~~a  123 (332)
                      .++++++|+++|+.+
T Consensus       143 ~~~~~~fD~v~~~~~  157 (269)
T 1p91_A          143 PFSDTSMDAIIRIYA  157 (269)
T ss_dssp             SBCTTCEEEEEEESC
T ss_pred             CCCCCceeEEEEeCC
Confidence            578899999998644

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=97.26  E-value=0.0042  Score=54.19  Aligned_cols=22  Identities=23%  Similarity=0.134  Sum_probs=18.3

Q ss_pred             CCceEEEeecCCCCcchHHHHH
Q 044174           28 SNIIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~   49 (332)
                      ....+|+|+|||+|..++.+..
T Consensus        54 ~~~~~vLDlGcG~G~~~~~la~   75 (204)
T 3njr_A           54 RRGELLWDIGGGSGSVSVEWCL   75 (204)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHH
T ss_pred             CCCCEEEEecCCCCHHHHHHHH
Confidence            3457999999999999988764

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=97.26  E-value=0.00077  Score=58.14  Aligned_cols=20  Identities=25%  Similarity=0.187  Sum_probs=17.2

Q ss_pred             ceEEEeecCCCCcchHHHHH
Q 044174           30 IIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~~   49 (332)
                      ..+|+|+|||+|..++.+..
T Consensus        66 ~~~vLDiG~G~G~~~~~l~~   85 (207)
T 1jsx_A           66 GERFIDVGTGPGLPGIPLSI   85 (207)
T ss_dssp             SSEEEEETCTTTTTHHHHHH
T ss_pred             CCeEEEECCCCCHHHHHHHH
Confidence            46999999999999988754

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=97.23  E-value=0.0012  Score=57.85  Aligned_cols=22  Identities=18%  Similarity=0.132  Sum_probs=18.1

Q ss_pred             CCceEEEeecCCCCcchHHHHH
Q 044174           28 SNIIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~   49 (332)
                      ....+|+|+|||+|..+..+..
T Consensus        76 ~~~~~vLDiG~G~G~~~~~la~   97 (226)
T 1i1n_A           76 HEGAKALDVGSGSGILTACFAR   97 (226)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHH
T ss_pred             CCCCEEEEEcCCcCHHHHHHHH
Confidence            3457999999999999987754

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=97.20  E-value=0.0022  Score=58.06  Aligned_cols=76  Identities=17%  Similarity=0.128  Sum_probs=42.6

Q ss_pred             CceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhc-Cccc-c--cceeeecCCc
Q 044174           29 NIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTS-LPQQ-R--EYYSAGVPGS  104 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~-l~~~-~--~~f~~~vpgS  104 (332)
                      ...+|+|+|||+|..++.++..+                .|..+|+--|.-. +.-...+. +... .  .--+..+.++
T Consensus        99 ~~~~vLdiG~G~G~~~~~l~~~~----------------~~~~~v~~vD~~~-~~~~~a~~~~~~~~g~~~~~v~~~~~d  161 (280)
T 1i9g_A           99 PGARVLEAGAGSGALTLSLLRAV----------------GPAGQVISYEQRA-DHAEHARRNVSGCYGQPPDNWRLVVSD  161 (280)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHH----------------CTTSEEEEECSCH-HHHHHHHHHHHHHHTSCCTTEEEECSC
T ss_pred             CCCEEEEEcccccHHHHHHHHHh----------------CCCCEEEEEeCCH-HHHHHHHHHHHHhcCCCCCcEEEEECc
Confidence            34689999999999988775431                0123455555421 11111111 1110 0  0113345566


Q ss_pred             cccCCcCCCceeEEEec
Q 044174          105 FHHRLFPQSSIHFAHCS  121 (332)
Q Consensus       105 Fy~~lfP~~svd~~~S~  121 (332)
                      +....+|++++|++++.
T Consensus       162 ~~~~~~~~~~~D~v~~~  178 (280)
T 1i9g_A          162 LADSELPDGSVDRAVLD  178 (280)
T ss_dssp             GGGCCCCTTCEEEEEEE
T ss_pred             hHhcCCCCCceeEEEEC
Confidence            66666788999999983

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=97.20  E-value=0.0022  Score=56.33  Aligned_cols=20  Identities=15%  Similarity=0.257  Sum_probs=17.3

Q ss_pred             ceEEEeecCCCCcchHHHHH
Q 044174           30 IIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~~   49 (332)
                      ..+|+|+|||+|..|+.++.
T Consensus        59 ~~~vLdiG~G~G~~~~~la~   78 (221)
T 3u81_A           59 PSLVLELGAYCGYSAVRMAR   78 (221)
T ss_dssp             CSEEEEECCTTSHHHHHHHT
T ss_pred             CCEEEEECCCCCHHHHHHHH
Confidence            46999999999999988753

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=97.17  E-value=0.0012  Score=57.48  Aligned_cols=19  Identities=16%  Similarity=0.085  Sum_probs=16.6

Q ss_pred             ceEEEeecCCCCcchHHHH
Q 044174           30 IIRLADLGCAVGSNTINAM   48 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~   48 (332)
                      ..+|+|+|||+|..++.++
T Consensus        55 ~~~vLDlgcG~G~~~~~l~   73 (202)
T 2fpo_A           55 DAQCLDCFAGSGALGLEAL   73 (202)
T ss_dssp             TCEEEETTCTTCHHHHHHH
T ss_pred             CCeEEEeCCCcCHHHHHHH
Confidence            4689999999999998765

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=97.16  E-value=0.0012  Score=59.15  Aligned_cols=22  Identities=14%  Similarity=0.001  Sum_probs=18.3

Q ss_pred             CceEEEeecCCCCcchHHHHHH
Q 044174           29 NIIRLADLGCAVGSNTINAMQD   50 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~~   50 (332)
                      +..+|+|+|||+|..++.++..
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~   86 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGAT   86 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHH
T ss_pred             CCCEEEEeCCChhHHHHHHHHh
Confidence            4579999999999999887643

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=97.15  E-value=0.0017  Score=60.66  Aligned_cols=81  Identities=11%  Similarity=-0.017  Sum_probs=44.0

Q ss_pred             CceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcC-cc--cccceeeecCCcc
Q 044174           29 NIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSL-PQ--QREYYSAGVPGSF  105 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l-~~--~~~~f~~~vpgSF  105 (332)
                      ...+|+|+|||+|..++.+....-                ...+|+-.|+-. +.-...+.. ..  ..+  +..+-+.+
T Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~----------------~~~~v~gvD~s~-~~~~~a~~~~~~~g~~~--v~~~~~d~  135 (317)
T 1dl5_A           75 KGMRVLEIGGGTGYNAAVMSRVVG----------------EKGLVVSVEYSR-KICEIAKRNVERLGIEN--VIFVCGDG  135 (317)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHC----------------TTCEEEEEESCH-HHHHHHHHHHHHTTCCS--EEEEESCG
T ss_pred             CcCEEEEecCCchHHHHHHHHhcC----------------CCCEEEEEECCH-HHHHHHHHHHHHcCCCC--eEEEECCh
Confidence            357999999999998887754311                012233333211 111111111 00  011  22334455


Q ss_pred             ccCCcCCCceeEEEecCcccccc
Q 044174          106 HHRLFPQSSIHFAHCSYALHWLS  128 (332)
Q Consensus       106 y~~lfP~~svd~~~S~~alHWLs  128 (332)
                      ...+.+.+++|+++|...+|++.
T Consensus       136 ~~~~~~~~~fD~Iv~~~~~~~~~  158 (317)
T 1dl5_A          136 YYGVPEFSPYDVIFVTVGVDEVP  158 (317)
T ss_dssp             GGCCGGGCCEEEEEECSBBSCCC
T ss_pred             hhccccCCCeEEEEEcCCHHHHH
Confidence            54455568999999999998743

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=97.12  E-value=0.00068  Score=65.69  Aligned_cols=20  Identities=25%  Similarity=0.546  Sum_probs=16.8

Q ss_pred             HHHHHHHHHHHhhccCCeEE
Q 044174          167 DMENFLNARAEEIVSGGMMV  186 (332)
Q Consensus       167 d~~~fL~~Ra~EL~pGG~mv  186 (332)
                      .+..+|.+|.+=|+|||+|+
T Consensus       167 ~l~~~l~a~~r~Lkp~G~~i  186 (376)
T 4hc4_A          167 MLSSVLHARTKWLKEGGLLL  186 (376)
T ss_dssp             SHHHHHHHHHHHEEEEEEEE
T ss_pred             hhhhHHHHHHhhCCCCceEC
Confidence            34568889999999999987

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=97.11  E-value=0.002  Score=58.35  Aligned_cols=22  Identities=23%  Similarity=0.315  Sum_probs=18.5

Q ss_pred             CCceEEEeecCCCCcchHHHHH
Q 044174           28 SNIIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~   49 (332)
                      ....+|+|+|||+|..++.+..
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~  100 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKI  100 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHH
T ss_pred             CCCCEEEEEcCCCCHHHHHHHH
Confidence            4567999999999999988753

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=97.10  E-value=0.00029  Score=62.25  Aligned_cols=22  Identities=23%  Similarity=0.163  Sum_probs=18.2

Q ss_pred             CceEEEeecCCCCcchHHHHHH
Q 044174           29 NIIRLADLGCAVGSNTINAMQD   50 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~~   50 (332)
                      ...+|+|+|||+|..+..+...
T Consensus        84 ~~~~VLdiG~G~G~~~~~la~~  105 (227)
T 1r18_A           84 PGARILDVGSGSGYLTACFYRY  105 (227)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHH
T ss_pred             CCCEEEEECCCccHHHHHHHHh
Confidence            3569999999999999877653

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=97.09  E-value=0.0008  Score=60.05  Aligned_cols=20  Identities=15%  Similarity=0.375  Sum_probs=17.4

Q ss_pred             CceEEEeecCCCCcchHHHH
Q 044174           29 NIIRLADLGCAVGSNTINAM   48 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~   48 (332)
                      +..+|+|+|||+|..++.+.
T Consensus        70 ~~~~vLDiG~G~G~~~~~la   89 (240)
T 1xdz_A           70 QVNTICDVGAGAGFPSLPIK   89 (240)
T ss_dssp             GCCEEEEECSSSCTTHHHHH
T ss_pred             CCCEEEEecCCCCHHHHHHH
Confidence            45799999999999998875

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=97.08  E-value=0.0041  Score=56.15  Aligned_cols=22  Identities=18%  Similarity=0.237  Sum_probs=18.2

Q ss_pred             CCceEEEeecCCCCcchHHHHH
Q 044174           28 SNIIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~   49 (332)
                      ....+|+|+|||+|..|..+.+
T Consensus        75 ~~g~~VLDlG~GtG~~t~~la~   96 (232)
T 3id6_C           75 RKGTKVLYLGAASGTTISHVSD   96 (232)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHH
T ss_pred             CCCCEEEEEeecCCHHHHHHHH
Confidence            4458999999999998877654

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=97.07  E-value=0.00038  Score=64.50  Aligned_cols=23  Identities=30%  Similarity=0.364  Sum_probs=18.9

Q ss_pred             CCceEEEeecCCCCcchHHHHHH
Q 044174           28 SNIIRLADLGCAVGSNTINAMQD   50 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~   50 (332)
                      ....+|+|+|||+|.-|..+++.
T Consensus        81 ~~g~~VLDlGcGtG~~s~~la~~  103 (276)
T 2wa2_A           81 ELKGTVVDLGCGRGSWSYYAASQ  103 (276)
T ss_dssp             CCCEEEEEESCTTCHHHHHHHTS
T ss_pred             CCCCEEEEeccCCCHHHHHHHHc
Confidence            34579999999999998877654

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=97.07  E-value=0.0016  Score=58.28  Aligned_cols=22  Identities=18%  Similarity=-0.000  Sum_probs=18.2

Q ss_pred             CceEEEeecCCCCcchHHHHHH
Q 044174           29 NIIRLADLGCAVGSNTINAMQD   50 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~~   50 (332)
                      ...+|+|+|||+|..++.+...
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~   72 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLL   72 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHH
Confidence            4689999999999888777553

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=97.07  E-value=0.006  Score=50.76  Aligned_cols=20  Identities=25%  Similarity=0.451  Sum_probs=17.2

Q ss_pred             CceEEEeecCCCCcchHHHH
Q 044174           29 NIIRLADLGCAVGSNTINAM   48 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~   48 (332)
                      +..+|+|+|||+|..++.+.
T Consensus        35 ~~~~vLdiG~G~G~~~~~l~   54 (183)
T 2yxd_A           35 KDDVVVDVGCGSGGMTVEIA   54 (183)
T ss_dssp             TTCEEEEESCCCSHHHHHHH
T ss_pred             CCCEEEEeCCCCCHHHHHHH
Confidence            45699999999999988875

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=97.05  E-value=0.00044  Score=63.68  Aligned_cols=23  Identities=30%  Similarity=0.413  Sum_probs=18.8

Q ss_pred             CCceEEEeecCCCCcchHHHHHH
Q 044174           28 SNIIRLADLGCAVGSNTINAMQD   50 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~   50 (332)
                      ....+|+|+|||+|.-|..+.+.
T Consensus        73 ~~g~~VLDlGcGtG~~s~~la~~   95 (265)
T 2oxt_A           73 ELTGRVVDLGCGRGGWSYYAASR   95 (265)
T ss_dssp             CCCEEEEEESCTTSHHHHHHHTS
T ss_pred             CCCCEEEEeCcCCCHHHHHHHHc
Confidence            34579999999999998877654

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=97.04  E-value=0.0011  Score=62.98  Aligned_cols=76  Identities=13%  Similarity=0.146  Sum_probs=41.7

Q ss_pred             CceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccc--cceeeecCCccc
Q 044174           29 NIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQR--EYYSAGVPGSFH  106 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~--~~f~~~vpgSFy  106 (332)
                      +..+|+|+|||+|..++.+++.                  +..+|+--|..  ..-...+......  .--+..+.+.+.
T Consensus        50 ~~~~VLDiGcGtG~ls~~la~~------------------g~~~V~~vD~s--~~~~~a~~~~~~~~l~~~v~~~~~d~~  109 (348)
T 2y1w_A           50 KDKIVLDVGCGSGILSFFAAQA------------------GARKIYAVEAS--TMAQHAEVLVKSNNLTDRIVVIPGKVE  109 (348)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT------------------TCSEEEEEECS--THHHHHHHHHHHTTCTTTEEEEESCTT
T ss_pred             CcCEEEEcCCCccHHHHHHHhC------------------CCCEEEEECCH--HHHHHHHHHHHHcCCCCcEEEEEcchh
Confidence            3469999999999988766431                  11356666653  2223322221100  011223444444


Q ss_pred             cCCcCCCceeEEEecCccc
Q 044174          107 HRLFPQSSIHFAHCSYALH  125 (332)
Q Consensus       107 ~~lfP~~svd~~~S~~alH  125 (332)
                      +-.+| +++|+++|...+|
T Consensus       110 ~~~~~-~~~D~Ivs~~~~~  127 (348)
T 2y1w_A          110 EVSLP-EQVDIIISEPMGY  127 (348)
T ss_dssp             TCCCS-SCEEEEEECCCBT
T ss_pred             hCCCC-CceeEEEEeCchh
Confidence            43344 6899999986654

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=97.00  E-value=0.0041  Score=54.96  Aligned_cols=23  Identities=17%  Similarity=0.157  Sum_probs=18.6

Q ss_pred             CCceEEEeecCCCCcchHHHHHH
Q 044174           28 SNIIRLADLGCAVGSNTINAMQD   50 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~   50 (332)
                      ....+|+|+|||+|..++.+.+.
T Consensus        76 ~~~~~vLDlG~G~G~~~~~la~~   98 (233)
T 2ipx_A           76 KPGAKVLYLGAASGTTVSHVSDI   98 (233)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHH
T ss_pred             CCCCEEEEEcccCCHHHHHHHHH
Confidence            34579999999999999887553

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=96.99  E-value=0.0019  Score=59.42  Aligned_cols=107  Identities=12%  Similarity=0.036  Sum_probs=61.4

Q ss_pred             ceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCc-----cc--------ccc
Q 044174           30 IIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLP-----QQ--------REY   96 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~-----~~--------~~~   96 (332)
                      ..+|+|+|||+|..++.+...            +      .-+|+..|.++.+.-...+...     ..        .++
T Consensus        80 ~~~vLDlG~G~G~~~~~~a~~------------~------~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v  141 (281)
T 3bzb_A           80 GKTVCELGAGAGLVSIVAFLA------------G------ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASP  141 (281)
T ss_dssp             TCEEEETTCTTSHHHHHHHHT------------T------CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCC
T ss_pred             CCeEEEecccccHHHHHHHHc------------C------CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCe
Confidence            469999999999988765321            1      1256777765444443333221     10        011


Q ss_pred             -eeeecCCccccCCc---CCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHH
Q 044174           97 -YSAGVPGSFHHRLF---PQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFL  172 (332)
Q Consensus        97 -f~~~vpgSFy~~lf---P~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL  172 (332)
                       +....-|.....+.   +++++|+|+++.++|+...                                      ...+|
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~--------------------------------------~~~ll  183 (281)
T 3bzb_A          142 KVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQA--------------------------------------HDALL  183 (281)
T ss_dssp             EEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGGG--------------------------------------HHHHH
T ss_pred             EEEEecCCCccHHHHhhccCCCCCEEEEeCcccChHH--------------------------------------HHHHH
Confidence             11111222222232   5789999999888887322                                      22345


Q ss_pred             HHHHHhhc---c--CCeEEEEeccc
Q 044174          173 NARAEEIV---S--GGMMVIIMPGI  192 (332)
Q Consensus       173 ~~Ra~EL~---p--GG~mvl~~~gr  192 (332)
                      +.-.+-|+   |  ||++++.+..+
T Consensus       184 ~~l~~~Lk~~~p~~gG~l~v~~~~~  208 (281)
T 3bzb_A          184 RSVKMLLALPANDPTAVALVTFTHH  208 (281)
T ss_dssp             HHHHHHBCCTTTCTTCEEEEEECC-
T ss_pred             HHHHHHhcccCCCCCCEEEEEEEee
Confidence            55556788   9  99998887654

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=96.98  E-value=0.0021  Score=57.07  Aligned_cols=19  Identities=16%  Similarity=0.480  Sum_probs=16.8

Q ss_pred             ceEEEeecCCCCcchHHHH
Q 044174           30 IIRLADLGCAVGSNTINAM   48 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~   48 (332)
                      ..+|+|+|||+|..++.++
T Consensus        72 ~~~vLDiG~G~G~~~~~la   90 (232)
T 3ntv_A           72 VKNILEIGTAIGYSSMQFA   90 (232)
T ss_dssp             CCEEEEECCSSSHHHHHHH
T ss_pred             CCEEEEEeCchhHHHHHHH
Confidence            4699999999999998775

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=96.97  E-value=0.0023  Score=56.97  Aligned_cols=76  Identities=9%  Similarity=-0.045  Sum_probs=40.7

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhc-Cccc-ccceeeecCCcc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTS-LPQQ-REYYSAGVPGSF  105 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~-l~~~-~~~f~~~vpgSF  105 (332)
                      ....+|+|+|||+|..++.+++.+           +     |..+|+..|.-. +.-...+. +... ..--+..+.+++
T Consensus        95 ~~~~~vLdiG~G~G~~~~~l~~~~-----------~-----~~~~v~~~D~~~-~~~~~a~~~~~~~~g~~~v~~~~~d~  157 (258)
T 2pwy_A           95 APGMRVLEAGTGSGGLTLFLARAV-----------G-----EKGLVESYEARP-HHLAQAERNVRAFWQVENVRFHLGKL  157 (258)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHH-----------C-----TTSEEEEEESCH-HHHHHHHHHHHHHCCCCCEEEEESCG
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHh-----------C-----CCCEEEEEeCCH-HHHHHHHHHHHHhcCCCCEEEEECch
Confidence            345699999999999998775532           0     122444444321 11111111 1110 001123344555


Q ss_pred             ccCCcCCCceeEEEe
Q 044174          106 HHRLFPQSSIHFAHC  120 (332)
Q Consensus       106 y~~lfP~~svd~~~S  120 (332)
                      .+..+|++++|++++
T Consensus       158 ~~~~~~~~~~D~v~~  172 (258)
T 2pwy_A          158 EEAELEEAAYDGVAL  172 (258)
T ss_dssp             GGCCCCTTCEEEEEE
T ss_pred             hhcCCCCCCcCEEEE
Confidence            554478889999998

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=96.95  E-value=0.0029  Score=59.30  Aligned_cols=21  Identities=14%  Similarity=0.183  Sum_probs=17.8

Q ss_pred             CCceEEEeecCCCCcchHHHH
Q 044174           28 SNIIRLADLGCAVGSNTINAM   48 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~   48 (332)
                      +.+.+|+|+|||+|..+..++
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~   96 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVL   96 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHT
T ss_pred             CCCCeEEEEcCCcCHHHHHHH
Confidence            456799999999999988775

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=96.94  E-value=0.0012  Score=61.75  Aligned_cols=21  Identities=14%  Similarity=0.118  Sum_probs=17.8

Q ss_pred             CCceEEEeecCCCCcchHHHH
Q 044174           28 SNIIRLADLGCAVGSNTINAM   48 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~   48 (332)
                      +++.+|+|+|||+|..+..++
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~  114 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVL  114 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHH
T ss_pred             CCCCeEEEEcCCCCHHHHHHH
Confidence            456799999999999988765

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=96.94  E-value=0.00071  Score=63.52  Aligned_cols=23  Identities=22%  Similarity=0.264  Sum_probs=18.9

Q ss_pred             CCceEEEeecCCCCcchHHHHHH
Q 044174           28 SNIIRLADLGCAVGSNTINAMQD   50 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~   50 (332)
                      ....+|+|+|||+|.-|..+++.
T Consensus        81 ~~g~~VLDlGcG~G~~s~~la~~  103 (305)
T 2p41_A           81 TPEGKVVDLGCGRGGWSYYCGGL  103 (305)
T ss_dssp             CCCEEEEEETCTTSHHHHHHHTS
T ss_pred             CCCCEEEEEcCCCCHHHHHHHhc
Confidence            33579999999999999887654

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=96.90  E-value=0.0032  Score=59.13  Aligned_cols=21  Identities=14%  Similarity=-0.189  Sum_probs=16.9

Q ss_pred             CCceEEEeecCCCCcchHHHH
Q 044174           28 SNIIRLADLGCAVGSNTINAM   48 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~   48 (332)
                      ....+|+|+|||+|+-|..++
T Consensus       121 ~~g~rVLDIGcG~G~~ta~~l  141 (298)
T 3fpf_A          121 RRGERAVFIGGGPLPLTGILL  141 (298)
T ss_dssp             CTTCEEEEECCCSSCHHHHHH
T ss_pred             CCcCEEEEECCCccHHHHHHH
Confidence            556899999999998775544

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=96.90  E-value=0.004  Score=66.02  Aligned_cols=110  Identities=12%  Similarity=0.081  Sum_probs=64.3

Q ss_pred             CceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhc-Cc----c--cccceeeec
Q 044174           29 NIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTS-LP----Q--QREYYSAGV  101 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~-l~----~--~~~~f~~~v  101 (332)
                      ...+|+|+|||+|..++.+...            +    .+..+|+--|+-.. .-...+. +.    .  ...--+..+
T Consensus       721 ~g~rVLDVGCGTG~lai~LAr~------------g----~p~a~VtGVDIS~e-mLe~AReRLa~~lnAkr~gl~nVefi  783 (950)
T 3htx_A          721 SASTLVDFGCGSGSLLDSLLDY------------P----TSLQTIIGVDISPK-GLARAAKMLHVKLNKEACNVKSATLY  783 (950)
T ss_dssp             CCSEEEEETCSSSHHHHHHTSS------------C----CCCCEEEEEESCHH-HHHHHHHHHHHHTTTTCSSCSEEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHh------------C----CCCCeEEEEECCHH-HHHHHHHHhhhccchhhcCCCceEEE
Confidence            3579999999999998776421            0    12234444444221 1111111 00    0  000112334


Q ss_pred             CCccccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 044174          102 PGSFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVS  181 (332)
Q Consensus       102 pgSFy~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~p  181 (332)
                      -|+.....++.+++|+|+++.++||+..                                    .+...||+.-.+-|+|
T Consensus       784 qGDa~dLp~~d~sFDlVV~~eVLeHL~d------------------------------------p~l~~~L~eI~RvLKP  827 (950)
T 3htx_A          784 DGSILEFDSRLHDVDIGTCLEVIEHMEE------------------------------------DQACEFGEKVLSLFHP  827 (950)
T ss_dssp             ESCTTSCCTTSCSCCEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHTTCC
T ss_pred             ECchHhCCcccCCeeEEEEeCchhhCCh------------------------------------HHHHHHHHHHHHHcCC
Confidence            4555566667899999999999999654                                    1223466666788899


Q ss_pred             CCeEEEEeccc
Q 044174          182 GGMMVIIMPGI  192 (332)
Q Consensus       182 GG~mvl~~~gr  192 (332)
                      | .+++..+.+
T Consensus       828 G-~LIISTPN~  837 (950)
T 3htx_A          828 K-LLIVSTPNY  837 (950)
T ss_dssp             S-EEEEEECBG
T ss_pred             C-EEEEEecCc
Confidence            9 777776543

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=96.90  E-value=0.0024  Score=58.24  Aligned_cols=75  Identities=5%  Similarity=-0.025  Sum_probs=40.7

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhc-Cccc-ccceeeecCCcc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTS-LPQQ-REYYSAGVPGSF  105 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~-l~~~-~~~f~~~vpgSF  105 (332)
                      ....+|+|+|||+|..++.+...+                .|..+|+.-|.-. +.-...+. +... ..--+..+-+.+
T Consensus       109 ~~~~~VLD~G~G~G~~~~~la~~~----------------~~~~~v~~vD~s~-~~~~~a~~~~~~~~g~~~v~~~~~d~  171 (275)
T 1yb2_A          109 RPGMDILEVGVGSGNMSSYILYAL----------------NGKGTLTVVERDE-DNLKKAMDNLSEFYDIGNVRTSRSDI  171 (275)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHH----------------TTSSEEEEECSCH-HHHHHHHHHHHTTSCCTTEEEECSCT
T ss_pred             CCcCEEEEecCCCCHHHHHHHHHc----------------CCCCEEEEEECCH-HHHHHHHHHHHhcCCCCcEEEEECch
Confidence            445799999999999988775432                0123455555422 11111111 1111 000122344555


Q ss_pred             ccCCcCCCceeEEEe
Q 044174          106 HHRLFPQSSIHFAHC  120 (332)
Q Consensus       106 y~~lfP~~svd~~~S  120 (332)
                      .. .+|++++|++++
T Consensus       172 ~~-~~~~~~fD~Vi~  185 (275)
T 1yb2_A          172 AD-FISDQMYDAVIA  185 (275)
T ss_dssp             TT-CCCSCCEEEEEE
T ss_pred             hc-cCcCCCccEEEE
Confidence            54 567889999998

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=96.89  E-value=0.0025  Score=60.33  Aligned_cols=101  Identities=12%  Similarity=0.155  Sum_probs=59.8

Q ss_pred             CCceEEEeecCCCCcchHHHHHH--------------HHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCccc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQD--------------VLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQ   93 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~--------------ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~   93 (332)
                      +++.+|+|+|||+|..+..+...              +++..++....    ...+.++++..|.-              
T Consensus        88 p~~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~----~~~~rv~v~~~Da~--------------  149 (317)
T 3gjy_A           88 ASKLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDI----PRAPRVKIRVDDAR--------------  149 (317)
T ss_dssp             GGGCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCC----CCTTTEEEEESCHH--------------
T ss_pred             CCCCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccc----cCCCceEEEECcHH--------------
Confidence            45679999999999988877641              22322322111    01233444444321              


Q ss_pred             ccceeeecCCccccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHH
Q 044174           94 REYYSAGVPGSFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLN  173 (332)
Q Consensus        94 ~~~f~~~vpgSFy~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~  173 (332)
                                .|- +-++++++|+|++....||  ..|..+..                                ..|++
T Consensus       150 ----------~~l-~~~~~~~fDvIi~D~~~~~--~~~~~L~t--------------------------------~efl~  184 (317)
T 3gjy_A          150 ----------MVA-ESFTPASRDVIIRDVFAGA--ITPQNFTT--------------------------------VEFFE  184 (317)
T ss_dssp             ----------HHH-HTCCTTCEEEEEECCSTTS--CCCGGGSB--------------------------------HHHHH
T ss_pred             ----------HHH-hhccCCCCCEEEECCCCcc--ccchhhhH--------------------------------HHHHH
Confidence                      111 1135679999999877776  22322211                                23666


Q ss_pred             HHHHhhccCCeEEEEecc
Q 044174          174 ARAEEIVSGGMMVIIMPG  191 (332)
Q Consensus       174 ~Ra~EL~pGG~mvl~~~g  191 (332)
                      .-.+-|+|||+|++....
T Consensus       185 ~~~r~LkpgGvlv~~~~~  202 (317)
T 3gjy_A          185 HCHRGLAPGGLYVANCGD  202 (317)
T ss_dssp             HHHHHEEEEEEEEEEEEE
T ss_pred             HHHHhcCCCcEEEEEecC
Confidence            667889999999999864

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=96.88  E-value=0.0039  Score=56.70  Aligned_cols=74  Identities=18%  Similarity=0.114  Sum_probs=41.8

Q ss_pred             CceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhc-Ccccc-cceeeecCCccc
Q 044174           29 NIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTS-LPQQR-EYYSAGVPGSFH  106 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~-l~~~~-~~f~~~vpgSFy  106 (332)
                      ...+|+|+|||+|..++.+++.+                .|..+|+..|.-. +.-...+. +.... .--+..+.+++.
T Consensus       112 ~~~~VLDiG~G~G~~~~~la~~~----------------~~~~~v~~vD~s~-~~~~~a~~~~~~~~~~~~v~~~~~d~~  174 (277)
T 1o54_A          112 EGDRIIDTGVGSGAMCAVLARAV----------------GSSGKVFAYEKRE-EFAKLAESNLTKWGLIERVTIKVRDIS  174 (277)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHT----------------TTTCEEEEECCCH-HHHHHHHHHHHHTTCGGGEEEECCCGG
T ss_pred             CCCEEEEECCcCCHHHHHHHHHh----------------CCCcEEEEEECCH-HHHHHHHHHHHHcCCCCCEEEEECCHH
Confidence            34699999999999988775421                1234566666422 22222221 11100 012334555665


Q ss_pred             cCCcCCCceeEEEe
Q 044174          107 HRLFPQSSIHFAHC  120 (332)
Q Consensus       107 ~~lfP~~svd~~~S  120 (332)
                      .. +|++++|++++
T Consensus       175 ~~-~~~~~~D~V~~  187 (277)
T 1o54_A          175 EG-FDEKDVDALFL  187 (277)
T ss_dssp             GC-CSCCSEEEEEE
T ss_pred             Hc-ccCCccCEEEE
Confidence            54 78889999998

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=96.87  E-value=0.0071  Score=57.26  Aligned_cols=129  Identities=12%  Similarity=0.041  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHhhhhcccCCCCCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHH
Q 044174            8 KEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLF   87 (332)
Q Consensus         8 ~~~l~~ai~~~~~~~~~~~~~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf   87 (332)
                      ++.+..++..+..      .....+|+|+|||+|..++.++...-                |...|+-.|.-.. .-...
T Consensus       188 ~~~la~~l~~~~~------~~~~~~vLD~gcGsG~~~ie~a~~~~----------------~~~~v~g~Di~~~-~i~~a  244 (354)
T 3tma_A          188 TPVLAQALLRLAD------ARPGMRVLDPFTGSGTIALEAASTLG----------------PTSPVYAGDLDEK-RLGLA  244 (354)
T ss_dssp             CHHHHHHHHHHTT------CCTTCCEEESSCTTSHHHHHHHHHHC----------------TTSCEEEEESCHH-HHHHH
T ss_pred             CHHHHHHHHHHhC------CCCCCEEEeCCCCcCHHHHHHHHhhC----------------CCceEEEEECCHH-HHHHH
Confidence            4445555544332      23456899999999999988765320                1122222222110 00000


Q ss_pred             h-cCcccc-cceeeecCCccccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHH
Q 044174           88 T-SLPQQR-EYYSAGVPGSFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFA  165 (332)
Q Consensus        88 ~-~l~~~~-~~f~~~vpgSFy~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~  165 (332)
                      + ++.... . .+.-+-+++.+-..|.+++|+++++-..+|....                      .        .+..
T Consensus       245 ~~n~~~~g~~-~i~~~~~D~~~~~~~~~~~D~Ii~npPyg~r~~~----------------------~--------~~~~  293 (354)
T 3tma_A          245 REAALASGLS-WIRFLRADARHLPRFFPEVDRILANPPHGLRLGR----------------------K--------EGLF  293 (354)
T ss_dssp             HHHHHHTTCT-TCEEEECCGGGGGGTCCCCSEEEECCCSCC--------------------------C--------HHHH
T ss_pred             HHHHHHcCCC-ceEEEeCChhhCccccCCCCEEEECCCCcCccCC----------------------c--------ccHH
Confidence            0 000000 1 2233344555545566778999996555441100                      0        1223


Q ss_pred             HHHHHHHHHHHHhhccCCeEEEEec
Q 044174          166 KDMENFLNARAEEIVSGGMMVIIMP  190 (332)
Q Consensus       166 ~d~~~fL~~Ra~EL~pGG~mvl~~~  190 (332)
                      .....+++.=.+-|+|||++++...
T Consensus       294 ~~~~~~~~~~~~~LkpgG~l~i~t~  318 (354)
T 3tma_A          294 HLYWDFLRGALALLPPGGRVALLTL  318 (354)
T ss_dssp             HHHHHHHHHHHHTSCTTCEEEEEES
T ss_pred             HHHHHHHHHHHHhcCCCcEEEEEeC
Confidence            3445677777788999999999864

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=96.83  E-value=0.0033  Score=62.63  Aligned_cols=76  Identities=13%  Similarity=0.152  Sum_probs=40.0

Q ss_pred             CceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccc--cceeeecCCccc
Q 044174           29 NIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQR--EYYSAGVPGSFH  106 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~--~~f~~~vpgSFy  106 (332)
                      +..+|+|+|||+|..++.++..                  +..+|+--|+..  --...+......  .--+..+.|.+.
T Consensus       158 ~~~~VLDiGcGtG~la~~la~~------------------~~~~V~gvD~s~--~l~~A~~~~~~~gl~~~v~~~~~d~~  217 (480)
T 3b3j_A          158 KDKIVLDVGCGSGILSFFAAQA------------------GARKIYAVEAST--MAQHAEVLVKSNNLTDRIVVIPGKVE  217 (480)
T ss_dssp             TTCEEEEESCSTTHHHHHHHHT------------------TCSEEEEEECHH--HHHHHHHHHHHTTCTTTEEEEESCTT
T ss_pred             CCCEEEEecCcccHHHHHHHHc------------------CCCEEEEEEcHH--HHHHHHHHHHHcCCCCcEEEEECchh
Confidence            3469999999999977655321                  123555566532  212222111000  011333445554


Q ss_pred             cCCcCCCceeEEEecCccc
Q 044174          107 HRLFPQSSIHFAHCSYALH  125 (332)
Q Consensus       107 ~~lfP~~svd~~~S~~alH  125 (332)
                      +-.+| +++|+++|+..+|
T Consensus       218 ~~~~~-~~fD~Ivs~~~~~  235 (480)
T 3b3j_A          218 EVSLP-EQVDIIISEPMGY  235 (480)
T ss_dssp             TCCCS-SCEEEEECCCCHH
T ss_pred             hCccC-CCeEEEEEeCchH
Confidence            43344 5899999976533

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=96.80  E-value=0.0068  Score=55.70  Aligned_cols=21  Identities=14%  Similarity=0.096  Sum_probs=18.0

Q ss_pred             CCceEEEeecCCCCcchHHHH
Q 044174           28 SNIIRLADLGCAVGSNTINAM   48 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~   48 (332)
                      +++.+|+|+|||+|..+..++
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~   94 (275)
T 1iy9_A           74 PNPEHVLVVGGGDGGVIREIL   94 (275)
T ss_dssp             SSCCEEEEESCTTCHHHHHHT
T ss_pred             CCCCEEEEECCchHHHHHHHH
Confidence            456899999999999988775

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=96.80  E-value=0.0061  Score=53.83  Aligned_cols=83  Identities=16%  Similarity=-0.013  Sum_probs=44.3

Q ss_pred             CceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhc-Ccccc-cceeeecCCccc
Q 044174           29 NIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTS-LPQQR-EYYSAGVPGSFH  106 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~-l~~~~-~~f~~~vpgSFy  106 (332)
                      ...+|+|+|||+|..++.+.+.-                   .+|+-.|+-..= -...+. +.... .--+..+-+++.
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~~-------------------~~v~~vD~s~~~-~~~a~~~~~~~~~~~~~~~~~~d~~  137 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALTG-------------------MRVIAIDIDPVK-IALARNNAEVYGIADKIEFICGDFL  137 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHTT-------------------CEEEEEESCHHH-HHHHHHHHHHTTCGGGEEEEESCHH
T ss_pred             CCCEEEECccccCHHHHHHHHcC-------------------CEEEEEECCHHH-HHHHHHHHHHcCCCcCeEEEECChH
Confidence            35799999999999999886420                   122222221100 000000 00000 001222333443


Q ss_pred             cCCcCCCceeEEEecCccccccCCcc
Q 044174          107 HRLFPQSSIHFAHCSYALHWLSKVPE  132 (332)
Q Consensus       107 ~~lfP~~svd~~~S~~alHWLs~~P~  132 (332)
                      .-. |++++|+++++..+||......
T Consensus       138 ~~~-~~~~~D~v~~~~~~~~~~~~~~  162 (241)
T 3gdh_A          138 LLA-SFLKADVVFLSPPWGGPDYATA  162 (241)
T ss_dssp             HHG-GGCCCSEEEECCCCSSGGGGGS
T ss_pred             Hhc-ccCCCCEEEECCCcCCcchhhh
Confidence            332 6679999999999999776544

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=96.80  E-value=0.0046  Score=54.49  Aligned_cols=20  Identities=30%  Similarity=0.531  Sum_probs=17.1

Q ss_pred             ceEEEeecCCCCcchHHHHH
Q 044174           30 IIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~~   49 (332)
                      ..+|+|+|||+|..++.++.
T Consensus        55 ~~~vLdiG~G~G~~~~~la~   74 (233)
T 2gpy_A           55 PARILEIGTAIGYSAIRMAQ   74 (233)
T ss_dssp             CSEEEEECCTTSHHHHHHHH
T ss_pred             CCEEEEecCCCcHHHHHHHH
Confidence            45999999999999987754

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=96.79  E-value=0.0027  Score=59.01  Aligned_cols=21  Identities=14%  Similarity=0.186  Sum_probs=17.7

Q ss_pred             CCceEEEeecCCCCcchHHHH
Q 044174           28 SNIIRLADLGCAVGSNTINAM   48 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~   48 (332)
                      +.+.+|+|+|||+|..+..++
T Consensus        89 ~~~~~VLdiG~G~G~~~~~l~  109 (296)
T 1inl_A           89 PNPKKVLIIGGGDGGTLREVL  109 (296)
T ss_dssp             SSCCEEEEEECTTCHHHHHHT
T ss_pred             CCCCEEEEEcCCcCHHHHHHH
Confidence            445799999999999998775

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=96.79  E-value=0.0013  Score=57.17  Aligned_cols=22  Identities=14%  Similarity=0.045  Sum_probs=18.4

Q ss_pred             CCceEEEeecCCCCcchHHHHH
Q 044174           28 SNIIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~   49 (332)
                      .+..+|+|+|||+|.-|..+.+
T Consensus        24 ~~g~~VLDlG~G~G~~s~~la~   45 (191)
T 3dou_A           24 RKGDAVIEIGSSPGGWTQVLNS   45 (191)
T ss_dssp             CTTCEEEEESCTTCHHHHHHTT
T ss_pred             CCCCEEEEEeecCCHHHHHHHH
Confidence            4468999999999999987754

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=96.76  E-value=0.0099  Score=52.02  Aligned_cols=23  Identities=17%  Similarity=0.082  Sum_probs=18.7

Q ss_pred             CCceEEEeecCCCCcchHHHHHH
Q 044174           28 SNIIRLADLGCAVGSNTINAMQD   50 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~   50 (332)
                      ....+|+|+|||+|..++.+.+.
T Consensus        72 ~~~~~vLDlG~G~G~~~~~la~~   94 (227)
T 1g8a_A           72 KPGKSVLYLGIASGTTASHVSDI   94 (227)
T ss_dssp             CTTCEEEEETTTSTTHHHHHHHH
T ss_pred             CCCCEEEEEeccCCHHHHHHHHH
Confidence            34569999999999999887654

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=96.74  E-value=0.0058  Score=56.60  Aligned_cols=71  Identities=11%  Similarity=0.078  Sum_probs=51.5

Q ss_pred             CCceEEEeecCCCCcchHHHH--------------HHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCccc
Q 044174           28 SNIIRLADLGCAVGSNTINAM--------------QDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQ   93 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~--------------~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~   93 (332)
                      +.+-+|+|+|||.|+-|+.++              ...++.+++.....+     ..+.+-+.|++..+           
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g-----~~~~~~v~D~~~~~-----------  194 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLN-----VPHRTNVADLLEDR-----------  194 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTT-----CCEEEEECCTTTSC-----------
T ss_pred             CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcC-----CCceEEEeeecccC-----------
Confidence            457799999999999998885              446666666554432     23666666665543           


Q ss_pred             ccceeeecCCccccCCcCCCceeEEEecCccccccCCc
Q 044174           94 REYYSAGVPGSFHHRLFPQSSIHFAHCSYALHWLSKVP  131 (332)
Q Consensus        94 ~~~f~~~vpgSFy~~lfP~~svd~~~S~~alHWLs~~P  131 (332)
                                       |....|++.++=++|-|.+..
T Consensus       195 -----------------p~~~~DvaL~lkti~~Le~q~  215 (281)
T 3lcv_B          195 -----------------LDEPADVTLLLKTLPCLETQQ  215 (281)
T ss_dssp             -----------------CCSCCSEEEETTCHHHHHHHS
T ss_pred             -----------------CCCCcchHHHHHHHHHhhhhh
Confidence                             566899999999999886633

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=96.67  E-value=0.0059  Score=54.19  Aligned_cols=21  Identities=14%  Similarity=0.289  Sum_probs=18.0

Q ss_pred             ceEEEeecCCCCcchHHHHHH
Q 044174           30 IIRLADLGCAVGSNTINAMQD   50 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~~~   50 (332)
                      ..+|+|+|||+|..++.++..
T Consensus        61 ~~~VLdiG~G~G~~~~~la~~   81 (239)
T 2hnk_A           61 AKRIIEIGTFTGYSSLCFASA   81 (239)
T ss_dssp             CSEEEEECCTTCHHHHHHHHH
T ss_pred             cCEEEEEeCCCCHHHHHHHHh
Confidence            469999999999999988654

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=96.66  E-value=0.016  Score=53.13  Aligned_cols=20  Identities=10%  Similarity=0.059  Sum_probs=17.5

Q ss_pred             ceEEEeecCCCCcchHHHHH
Q 044174           30 IIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~~   49 (332)
                      .-+|+|+|||+|..|+.++.
T Consensus       126 ~~~VLDlgcG~G~~~~~la~  145 (278)
T 2frn_A          126 DELVVDMFAGIGHLSLPIAV  145 (278)
T ss_dssp             TCEEEETTCTTTTTHHHHHH
T ss_pred             CCEEEEecccCCHHHHHHHH
Confidence            57999999999999988754

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=96.61  E-value=0.028  Score=48.84  Aligned_cols=20  Identities=20%  Similarity=0.234  Sum_probs=17.2

Q ss_pred             ceEEEeecCCCCcchHHHHH
Q 044174           30 IIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~~   49 (332)
                      ..+|+|+|||+|..|+.+++
T Consensus        59 ~~~vLdiG~G~G~~~~~la~   78 (223)
T 3duw_A           59 ARNILEIGTLGGYSTIWLAR   78 (223)
T ss_dssp             CSEEEEECCTTSHHHHHHHT
T ss_pred             CCEEEEecCCccHHHHHHHH
Confidence            57999999999999987753

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=96.54  E-value=0.028  Score=50.30  Aligned_cols=20  Identities=25%  Similarity=0.320  Sum_probs=17.2

Q ss_pred             ceEEEeecCCCCcchHHHHH
Q 044174           30 IIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~~   49 (332)
                      ..+|+|+|||+|..|+.++.
T Consensus        64 ~~~VLdiG~G~G~~~~~la~   83 (248)
T 3tfw_A           64 AKRILEIGTLGGYSTIWMAR   83 (248)
T ss_dssp             CSEEEEECCTTSHHHHHHHT
T ss_pred             CCEEEEecCCchHHHHHHHH
Confidence            57999999999999987753

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=96.53  E-value=0.016  Score=51.78  Aligned_cols=21  Identities=29%  Similarity=0.632  Sum_probs=18.2

Q ss_pred             CceEEEeecCCCCcchHHHHH
Q 044174           29 NIIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~   49 (332)
                      +..+|+|+|||+|..++.++.
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~   69 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSP   69 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHH
T ss_pred             CCCEEEEEcCCCCHHHHHHHH
Confidence            457999999999999988764

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=96.53  E-value=0.0098  Score=52.73  Aligned_cols=20  Identities=10%  Similarity=0.014  Sum_probs=17.2

Q ss_pred             ceEEEeecCCCCcchHHHHH
Q 044174           30 IIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~~   49 (332)
                      ..+|+|+|||+|..|+.++.
T Consensus        57 ~~~vLdiG~G~G~~~~~la~   76 (221)
T 3dr5_A           57 STGAIAITPAAGLVGLYILN   76 (221)
T ss_dssp             CCEEEEESTTHHHHHHHHHH
T ss_pred             CCCEEEEcCCchHHHHHHHH
Confidence            45899999999999988764

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=96.47  E-value=0.018  Score=53.74  Aligned_cols=110  Identities=8%  Similarity=0.046  Sum_probs=57.9

Q ss_pred             CCceEEEeecCCCCcch--HHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCcc
Q 044174           28 SNIIRLADLGCAVGSNT--INAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSF  105 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns--~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSF  105 (332)
                      +...+|+|+|||+|.+.  =.   .+   +.+..        ++.-+|+-.|+-..        ++   ++-+. +-|++
T Consensus        62 ~~g~~VLDLGcGsg~~~GpGs---~~---~a~~~--------~~~~~V~gvDis~~--------v~---~v~~~-i~gD~  115 (290)
T 2xyq_A           62 PYNMRVIHFGAGSDKGVAPGT---AV---LRQWL--------PTGTLLVDSDLNDF--------VS---DADST-LIGDC  115 (290)
T ss_dssp             CTTCEEEEESCCCTTSBCHHH---HH---HHHHS--------CTTCEEEEEESSCC--------BC---SSSEE-EESCG
T ss_pred             CCCCEEEEeCCCCCCCCCcHH---HH---HHHHc--------CCCCEEEEEECCCC--------CC---CCEEE-EECcc
Confidence            44679999999774443  11   11   11111        12345666666543        11   11110 44555


Q ss_pred             ccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeE
Q 044174          106 HHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMM  185 (332)
Q Consensus       106 y~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~m  185 (332)
                      ....++ +++|+|+|+.+.+|.-...   .+..     .+                   ...+...|+.-.+-|+|||+|
T Consensus       116 ~~~~~~-~~fD~Vvsn~~~~~~g~~~---~d~~-----~~-------------------~~l~~~~l~~a~r~LkpGG~~  167 (290)
T 2xyq_A          116 ATVHTA-NKWDLIISDMYDPRTKHVT---KEND-----SK-------------------EGFFTYLCGFIKQKLALGGSI  167 (290)
T ss_dssp             GGCCCS-SCEEEEEECCCCCC---CC---SCCC-----CC-------------------CTHHHHHHHHHHHHEEEEEEE
T ss_pred             ccCCcc-CcccEEEEcCCcccccccc---cccc-----ch-------------------HHHHHHHHHHHHHhcCCCcEE
Confidence            554343 7899999987655521110   0000     00                   123345666667889999999


Q ss_pred             EEEecc
Q 044174          186 VIIMPG  191 (332)
Q Consensus       186 vl~~~g  191 (332)
                      ++....
T Consensus       168 v~~~~~  173 (290)
T 2xyq_A          168 AVKITE  173 (290)
T ss_dssp             EEEECS
T ss_pred             EEEEec
Confidence            997543

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=96.45  E-value=0.029  Score=49.32  Aligned_cols=21  Identities=14%  Similarity=0.178  Sum_probs=17.8

Q ss_pred             CceEEEeecCCCCcchHHHHH
Q 044174           29 NIIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~   49 (332)
                      ...+|+|+|||+|..++.+++
T Consensus        91 ~~~~vldiG~G~G~~~~~l~~  111 (248)
T 2yvl_A           91 KEKRVLEFGTGSGALLAVLSE  111 (248)
T ss_dssp             TTCEEEEECCTTSHHHHHHHH
T ss_pred             CCCEEEEeCCCccHHHHHHHH
Confidence            456999999999999988765

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=96.42  E-value=0.013  Score=54.76  Aligned_cols=21  Identities=14%  Similarity=0.120  Sum_probs=17.9

Q ss_pred             CCceEEEeecCCCCcchHHHH
Q 044174           28 SNIIRLADLGCAVGSNTINAM   48 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~   48 (332)
                      +++-+|+|+|||+|..+..++
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~  114 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVV  114 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHT
T ss_pred             CCCCEEEEECCCchHHHHHHH
Confidence            456799999999999998774

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=96.39  E-value=0.018  Score=56.20  Aligned_cols=126  Identities=17%  Similarity=0.159  Sum_probs=69.2

Q ss_pred             CceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCccccC
Q 044174           29 NIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHR  108 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~~  108 (332)
                      ...+|+|+|||+|..|+.+++..                 +..+|+-.|.-..=...+-+++.... .-+..+.+++..-
T Consensus       246 ~g~~VLDlgaG~G~~t~~la~~~-----------------~~~~v~a~D~~~~~l~~~~~~~~~~g-~~~~~~~~D~~~~  307 (429)
T 1sqg_A          246 NGEHILDLCAAPGGKTTHILEVA-----------------PEAQVVAVDIDEQRLSRVYDNLKRLG-MKATVKQGDGRYP  307 (429)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHC-----------------TTCEEEEEESSTTTHHHHHHHHHHTT-CCCEEEECCTTCT
T ss_pred             CcCeEEEECCCchHHHHHHHHHc-----------------CCCEEEEECCCHHHHHHHHHHHHHcC-CCeEEEeCchhhc
Confidence            34699999999999998876531                 11456666655443333333322111 0012223333322


Q ss_pred             C--cCCCceeEEEe---cCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 044174          109 L--FPQSSIHFAHC---SYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGG  183 (332)
Q Consensus       109 l--fP~~svd~~~S---~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG  183 (332)
                      .  ++.+++|.|++   .+.+..+.+.|.....              .++..+     ....+....+|+.=.+-|+|||
T Consensus       308 ~~~~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~--------------~~~~~~-----~~l~~~q~~~L~~a~~~LkpGG  368 (429)
T 1sqg_A          308 SQWCGEQQFDRILLDAPCSATGVIRRHPDIKWL--------------RRDRDI-----PELAQLQSEILDAIWPHLKTGG  368 (429)
T ss_dssp             HHHHTTCCEEEEEEECCCCCGGGTTTCTTHHHH--------------CCTTHH-----HHHHHHHHHHHHHHGGGEEEEE
T ss_pred             hhhcccCCCCEEEEeCCCCcccccCCCcchhhc--------------CCHHHH-----HHHHHHHHHHHHHHHHhcCCCC
Confidence            2  56789999997   3345555555543211              001111     1222333567777778899999


Q ss_pred             eEEEEecc
Q 044174          184 MMVIIMPG  191 (332)
Q Consensus       184 ~mvl~~~g  191 (332)
                      +||.....
T Consensus       369 ~lvystcs  376 (429)
T 1sqg_A          369 TLVYATCS  376 (429)
T ss_dssp             EEEEEESC
T ss_pred             EEEEEECC
Confidence            99997654

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=96.34  E-value=0.016  Score=54.27  Aligned_cols=27  Identities=19%  Similarity=0.194  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHHhhccCCeEEEEecc
Q 044174          165 AKDMENFLNARAEEIVSGGMMVIIMPG  191 (332)
Q Consensus       165 ~~d~~~fL~~Ra~EL~pGG~mvl~~~g  191 (332)
                      .+.-..+|+.=++-|+|||+||+....
T Consensus       222 ~~~q~~~L~~~~~~LkpGG~lv~stcs  248 (315)
T 1ixk_A          222 QGLQMRLLEKGLEVLKPGGILVYSTCS  248 (315)
T ss_dssp             HHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            344467788878889999999997543

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=96.32  E-value=0.013  Score=55.11  Aligned_cols=21  Identities=10%  Similarity=-0.024  Sum_probs=17.7

Q ss_pred             CCceEEEeecCCCCcchHHHH
Q 044174           28 SNIIRLADLGCAVGSNTINAM   48 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~   48 (332)
                      +.+.+|+|+|||+|..+..++
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~  135 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELC  135 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHT
T ss_pred             CCCCEEEEEcCCccHHHHHHH
Confidence            445799999999999998775

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=96.30  E-value=0.0026  Score=57.07  Aligned_cols=36  Identities=11%  Similarity=-0.060  Sum_probs=25.4

Q ss_pred             HHHHHHHHHhhhhcccCCCCCceEEEeecCCCCcchHHHHHH
Q 044174            9 EKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQD   50 (332)
Q Consensus         9 ~~l~~ai~~~~~~~~~~~~~~~~~iaD~GCs~G~ns~~~~~~   50 (332)
                      |.....+.+++...      +.-+|+|+|||+|..|+.+.+.
T Consensus        67 p~~~~~l~~~l~~~------~~~~VLDiG~GtG~~t~~la~~  102 (236)
T 2bm8_A           67 PDTQAVYHDMLWEL------RPRTIVELGVYNGGSLAWFRDL  102 (236)
T ss_dssp             HHHHHHHHHHHHHH------CCSEEEEECCTTSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc------CCCEEEEEeCCCCHHHHHHHHh
Confidence            55556666555432      1359999999999999887653

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=96.21  E-value=0.039  Score=52.22  Aligned_cols=21  Identities=14%  Similarity=0.102  Sum_probs=17.7

Q ss_pred             CCceEEEeecCCCCcchHHHH
Q 044174           28 SNIIRLADLGCAVGSNTINAM   48 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~   48 (332)
                      +.+.+|+|+|||+|..+..++
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la  139 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVA  139 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHT
T ss_pred             CCCCEEEEECCCccHHHHHHH
Confidence            456799999999999988764

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=96.16  E-value=0.011  Score=55.63  Aligned_cols=21  Identities=14%  Similarity=0.140  Sum_probs=17.6

Q ss_pred             CCceEEEeecCCCCcchHHHH
Q 044174           28 SNIIRLADLGCAVGSNTINAM   48 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~   48 (332)
                      +.+.+|+|+|||+|..+..++
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~  127 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVL  127 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHT
T ss_pred             CCCCEEEEEcCCcCHHHHHHH
Confidence            445799999999999988774

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=96.11  E-value=0.025  Score=51.99  Aligned_cols=21  Identities=10%  Similarity=-0.024  Sum_probs=17.8

Q ss_pred             CCceEEEeecCCCCcchHHHH
Q 044174           28 SNIIRLADLGCAVGSNTINAM   48 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~   48 (332)
                      +++.+|+|+|||+|..+..++
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~   97 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELC   97 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHT
T ss_pred             CCCCeEEEEeCCcCHHHHHHH
Confidence            456799999999999988774

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=96.11  E-value=0.0091  Score=54.53  Aligned_cols=27  Identities=7%  Similarity=0.148  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHhhccCCeEEEEeccc
Q 044174          166 KDMENFLNARAEEIVSGGMMVIIMPGI  192 (332)
Q Consensus       166 ~d~~~fL~~Ra~EL~pGG~mvl~~~gr  192 (332)
                      .+...+|+.=++-|+|||+||......
T Consensus       188 ~~~~~~l~~~~~~LkpgG~lv~stcs~  214 (274)
T 3ajd_A          188 LRQKELIDIGIDLLKKDGELVYSTCSM  214 (274)
T ss_dssp             TCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence            455677887788899999999986543

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=96.09  E-value=0.032  Score=51.22  Aligned_cols=21  Identities=14%  Similarity=0.205  Sum_probs=17.8

Q ss_pred             CCceEEEeecCCCCcchHHHH
Q 044174           28 SNIIRLADLGCAVGSNTINAM   48 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~   48 (332)
                      +.+.+|+|+|||+|..+..++
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~   94 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVL   94 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHT
T ss_pred             CCCCeEEEEcCCcCHHHHHHH
Confidence            445799999999999998775

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=96.02  E-value=0.015  Score=50.68  Aligned_cols=20  Identities=20%  Similarity=0.272  Sum_probs=17.2

Q ss_pred             ceEEEeecCCCCcchHHHHH
Q 044174           30 IIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~~   49 (332)
                      ..+|+|+|||+|..|+.++.
T Consensus        65 ~~~vLdiG~G~G~~~~~la~   84 (225)
T 3tr6_A           65 AKKVIDIGTFTGYSAIAMGL   84 (225)
T ss_dssp             CSEEEEECCTTSHHHHHHHT
T ss_pred             CCEEEEeCCcchHHHHHHHH
Confidence            45999999999999988753

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=96.02  E-value=0.035  Score=52.49  Aligned_cols=28  Identities=7%  Similarity=0.068  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHHHhhccCCeEEEEeccc
Q 044174          165 AKDMENFLNARAEEIVSGGMMVIIMPGI  192 (332)
Q Consensus       165 ~~d~~~fL~~Ra~EL~pGG~mvl~~~gr  192 (332)
                      .+|...+|+.-.+-|+|||.++++....
T Consensus       248 ~~~~~~ll~~~~~~LkpgG~lli~~~~~  275 (332)
T 2igt_A          248 FDHLPLMLDICREILSPKALGLVLTAYS  275 (332)
T ss_dssp             HHHHHHHHHHHHHTBCTTCCEEEEEECC
T ss_pred             HHHHHHHHHHHHHhcCcCcEEEEEECCC
Confidence            4567778888889999999988887653

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=96.01  E-value=0.046  Score=54.33  Aligned_cols=21  Identities=29%  Similarity=0.302  Sum_probs=18.3

Q ss_pred             CceEEEeecCCCCcchHHHHH
Q 044174           29 NIIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~   49 (332)
                      ...+|+|+|||+|.-|+.+++
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~  137 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISA  137 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHH
T ss_pred             CCCEEEEeCCCCCHHHHHHHH
Confidence            457999999999999998765

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=95.89  E-value=0.049  Score=50.08  Aligned_cols=20  Identities=25%  Similarity=0.463  Sum_probs=17.2

Q ss_pred             ceEEEeecCCCCcchHHHHH
Q 044174           30 IIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~~   49 (332)
                      ..+|+|+|||+|..++.+..
T Consensus       124 ~~~vLDlG~GsG~~~~~la~  143 (284)
T 1nv8_A          124 IKTVADIGTGSGAIGVSVAK  143 (284)
T ss_dssp             CCEEEEESCTTSHHHHHHHH
T ss_pred             CCEEEEEeCchhHHHHHHHH
Confidence            35899999999999988764

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=95.75  E-value=0.011  Score=53.19  Aligned_cols=20  Identities=15%  Similarity=0.267  Sum_probs=17.3

Q ss_pred             ceEEEeecCCCCcchHHHHH
Q 044174           30 IIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~~   49 (332)
                      .-+|+|+|||+|..|+.++.
T Consensus        61 ~~~VLDiG~G~G~~t~~la~   80 (242)
T 3r3h_A           61 AKKVLELGTFTGYSALAMSL   80 (242)
T ss_dssp             CSEEEEEESCCSHHHHHHHH
T ss_pred             cCEEEEeeCCcCHHHHHHHH
Confidence            46999999999999988754

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=95.73  E-value=0.078  Score=52.00  Aligned_cols=20  Identities=25%  Similarity=0.260  Sum_probs=17.5

Q ss_pred             ceEEEeecCCCCcchHHHHH
Q 044174           30 IIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~~   49 (332)
                      ..+|+|+|||+|.-|+.+.+
T Consensus       260 g~~VLDlgaG~G~~t~~la~  279 (450)
T 2yxl_A          260 GETVVDLAAAPGGKTTHLAE  279 (450)
T ss_dssp             TCEEEESSCTTCHHHHHHHH
T ss_pred             cCEEEEeCCCccHHHHHHHH
Confidence            46999999999999988765

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=95.71  E-value=0.18  Score=48.22  Aligned_cols=30  Identities=7%  Similarity=0.073  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHHHhhccCCeEEEEecc
Q 044174          162 SQFAKDMENFLNARAEEIVSGGMMVIIMPG  191 (332)
Q Consensus       162 ~q~~~d~~~fL~~Ra~EL~pGG~mvl~~~g  191 (332)
                      ....+++..++..-.+-|+|||.+++....
T Consensus       298 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  327 (382)
T 1wxx_A          298 ERAYRAYKEVNLRAIKLLKEGGILATASCS  327 (382)
T ss_dssp             HHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            345678888999999999999999988743

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=95.71  E-value=0.15  Score=49.22  Aligned_cols=29  Identities=3%  Similarity=0.171  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHHHHHhhccCCeEEEEec
Q 044174          162 SQFAKDMENFLNARAEEIVSGGMMVIIMP  190 (332)
Q Consensus       162 ~q~~~d~~~fL~~Ra~EL~pGG~mvl~~~  190 (332)
                      ....+++..+++.=.+-|+|||++++...
T Consensus       299 ~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~  327 (393)
T 4dmg_A          299 PAMKRHLVDLVREALRLLAEEGFLWLSSC  327 (393)
T ss_dssp             HHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            45667888899988899999999995543

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=95.65  E-value=0.0041  Score=56.91  Aligned_cols=72  Identities=17%  Similarity=0.182  Sum_probs=52.1

Q ss_pred             CCceEEEeecCCCCcchHHHH-----------HHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccc
Q 044174           28 SNIIRLADLGCAVGSNTINAM-----------QDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREY   96 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~-----------~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~   96 (332)
                      +.+-+|+|+|||.|+-++..+           ...++.+++.....     .+++.+...|++.-+              
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~~~~~y~a~DId~~~i~~ar~~~~~~-----g~~~~~~v~D~~~~~--------------  164 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYERGIASVWGCDIHQGLGDVITPFAREK-----DWDFTFALQDVLCAP--------------  164 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHTTCSEEEEEESBHHHHHHHHHHHHHT-----TCEEEEEECCTTTSC--------------
T ss_pred             CCCCeEEEecCCccHHHHHhccCCeEEEEeCCHHHHHHHHHHHHhc-----CCCceEEEeecccCC--------------
Confidence            446799999999999998866           45667666664432     245666666665443              


Q ss_pred             eeeecCCccccCCcCCCceeEEEecCccccccCCcc
Q 044174           97 YSAGVPGSFHHRLFPQSSIHFAHCSYALHWLSKVPE  132 (332)
Q Consensus        97 f~~~vpgSFy~~lfP~~svd~~~S~~alHWLs~~P~  132 (332)
                                    |..+.|++.++=++|-|.+...
T Consensus       165 --------------~~~~~DvvLllk~lh~LE~q~~  186 (253)
T 3frh_A          165 --------------PAEAGDLALIFKLLPLLEREQA  186 (253)
T ss_dssp             --------------CCCBCSEEEEESCHHHHHHHST
T ss_pred             --------------CCCCcchHHHHHHHHHhhhhch
Confidence                          4449999999999999876543

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=95.41  E-value=0.16  Score=47.59  Aligned_cols=128  Identities=9%  Similarity=0.023  Sum_probs=65.9

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhc-CcccccceeeecCCccc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTS-LPQQREYYSAGVPGSFH  106 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~-l~~~~~~f~~~vpgSFy  106 (332)
                      ....+|+|.|||+|.-++.+.+.+-    +..        ....+++-.|+-..=. .+.+. +... ..-+.-+-|.+.
T Consensus       129 ~~~~~VlDp~cGsG~~l~~~~~~~~----~~~--------~~~~~v~GiDi~~~~~-~~a~~n~~~~-g~~~~i~~~D~l  194 (344)
T 2f8l_A          129 KKNVSILDPACGTANLLTTVINQLE----LKG--------DVDVHASGVDVDDLLI-SLALVGADLQ-RQKMTLLHQDGL  194 (344)
T ss_dssp             CSEEEEEETTCTTSHHHHHHHHHHH----TTS--------SCEEEEEEEESCHHHH-HHHHHHHHHH-TCCCEEEESCTT
T ss_pred             CCCCEEEeCCCCccHHHHHHHHHHH----Hhc--------CCCceEEEEECCHHHH-HHHHHHHHhC-CCCceEEECCCC
Confidence            3568999999999999887765431    110        1235555555421111 11111 0000 001122333433


Q ss_pred             cCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHH-HHHHHHHHHhhccCCeE
Q 044174          107 HRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDM-ENFLNARAEEIVSGGMM  185 (332)
Q Consensus       107 ~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~-~~fL~~Ra~EL~pGG~m  185 (332)
                      .. .+..++|+++++-.+++.....  ....-.+...+|.-                   |. ..|+..=.+-|+|||++
T Consensus       195 ~~-~~~~~fD~Ii~NPPfg~~~~~~--~~~~~~~~~~~g~~-------------------~~~~~~l~~~~~~Lk~gG~~  252 (344)
T 2f8l_A          195 AN-LLVDPVDVVISDLPVGYYPDDE--NAKTFELCREEGHS-------------------FAHFLFIEQGMRYTKPGGYL  252 (344)
T ss_dssp             SC-CCCCCEEEEEEECCCSEESCHH--HHTTSTTCCSSSCE-------------------EHHHHHHHHHHHTEEEEEEE
T ss_pred             Cc-cccCCccEEEECCCCCCcCchh--hhhhccccCCCCcc-------------------hHHHHHHHHHHHHhCCCCEE
Confidence            32 3567899999998887754211  11111111112211                   11 23666666789999999


Q ss_pred             EEEecc
Q 044174          186 VIIMPG  191 (332)
Q Consensus       186 vl~~~g  191 (332)
                      +++.+.
T Consensus       253 ~~v~p~  258 (344)
T 2f8l_A          253 FFLVPD  258 (344)
T ss_dssp             EEEEEG
T ss_pred             EEEECc
Confidence            999854

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=95.39  E-value=0.014  Score=50.45  Aligned_cols=20  Identities=10%  Similarity=-0.052  Sum_probs=16.8

Q ss_pred             ceEEEeecCCCCcchHHHHH
Q 044174           30 IIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~~   49 (332)
                      ..+|+|+|||+|..|+.++.
T Consensus        57 ~~~vLdiG~G~G~~~~~la~   76 (210)
T 3c3p_A           57 PQLVVVPGDGLGCASWWFAR   76 (210)
T ss_dssp             CSEEEEESCGGGHHHHHHHT
T ss_pred             CCEEEEEcCCccHHHHHHHH
Confidence            46899999999999987643

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=95.37  E-value=0.057  Score=47.99  Aligned_cols=21  Identities=14%  Similarity=0.203  Sum_probs=18.0

Q ss_pred             CceEEEeecCCCCcchHHHHH
Q 044174           29 NIIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~   49 (332)
                      ++-+|+|+|||+|..|+.++.
T Consensus        70 ~~~~VLeiG~G~G~~~~~la~   90 (237)
T 3c3y_A           70 NAKKTIEVGVFTGYSLLLTAL   90 (237)
T ss_dssp             TCCEEEEECCTTSHHHHHHHH
T ss_pred             CCCEEEEeCCCCCHHHHHHHH
Confidence            356999999999999988865

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=95.34  E-value=0.033  Score=49.30  Aligned_cols=20  Identities=10%  Similarity=0.213  Sum_probs=17.0

Q ss_pred             ceEEEeecCCCCcchHHHHH
Q 044174           30 IIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~~   49 (332)
                      .-+|+|+|||+|..++.++.
T Consensus        73 ~~~vLdiG~G~G~~~~~la~   92 (232)
T 3cbg_A           73 AKQVLEIGVFRGYSALAMAL   92 (232)
T ss_dssp             CCEEEEECCTTSHHHHHHHT
T ss_pred             CCEEEEecCCCCHHHHHHHH
Confidence            45999999999999988753

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=95.30  E-value=0.022  Score=51.25  Aligned_cols=21  Identities=14%  Similarity=0.227  Sum_probs=17.8

Q ss_pred             CceEEEeecCCCCcchHHHHH
Q 044174           29 NIIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~   49 (332)
                      +.-+|+|+|||+|..++.++.
T Consensus        79 ~~~~VLeiG~G~G~~~~~la~   99 (247)
T 1sui_A           79 NAKNTMEIGVYTGYSLLATAL   99 (247)
T ss_dssp             TCCEEEEECCGGGHHHHHHHH
T ss_pred             CcCEEEEeCCCcCHHHHHHHH
Confidence            346999999999999988765

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=95.30  E-value=0.02  Score=55.07  Aligned_cols=28  Identities=14%  Similarity=0.329  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHHHHhhccCCeEEEEecc
Q 044174          164 FAKDMENFLNARAEEIVSGGMMVIIMPG  191 (332)
Q Consensus       164 ~~~d~~~fL~~Ra~EL~pGG~mvl~~~g  191 (332)
                      ..+++..+++.-.+-|+|||.+++....
T Consensus       306 ~~~~~~~ll~~~~~~L~pgG~l~~~~~~  333 (385)
T 2b78_A          306 VSKDYHKLIRQGLEILSENGLIIASTNA  333 (385)
T ss_dssp             HHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            4567777888888999999999988744

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=95.27  E-value=0.23  Score=47.56  Aligned_cols=30  Identities=17%  Similarity=0.068  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHHHHHhhccCCeEEEEecc
Q 044174          162 SQFAKDMENFLNARAEEIVSGGMMVIIMPG  191 (332)
Q Consensus       162 ~q~~~d~~~fL~~Ra~EL~pGG~mvl~~~g  191 (332)
                      .+..+++..+|..-.+-|+|||.+++....
T Consensus       308 ~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~  337 (396)
T 2as0_A          308 KAGLRAYFNVNFAGLNLVKDGGILVTCSCS  337 (396)
T ss_dssp             HHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence            345678888999999999999999888643

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=95.21  E-value=0.17  Score=43.81  Aligned_cols=20  Identities=20%  Similarity=0.253  Sum_probs=17.1

Q ss_pred             ceEEEeecCCCCcchHHHHH
Q 044174           30 IIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~~   49 (332)
                      ..+|+|+|||+|..++.++.
T Consensus        70 ~~~vLdiG~G~G~~~~~la~   89 (229)
T 2avd_A           70 AKKALDLGTFTGYSALALAL   89 (229)
T ss_dssp             CCEEEEECCTTSHHHHHHHT
T ss_pred             CCEEEEEcCCccHHHHHHHH
Confidence            46999999999999988753

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=95.21  E-value=0.14  Score=45.82  Aligned_cols=22  Identities=23%  Similarity=0.178  Sum_probs=18.6

Q ss_pred             CCceEEEeecCCCCcchHHHHH
Q 044174           28 SNIIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~   49 (332)
                      ++..+|+|+|||+|.-++.++.
T Consensus        14 ~~g~~VlDIGtGsG~l~i~la~   35 (225)
T 3kr9_A           14 SQGAILLDVGSDHAYLPIELVE   35 (225)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHH
Confidence            3457999999999999998863

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=95.11  E-value=0.096  Score=50.06  Aligned_cols=25  Identities=24%  Similarity=0.529  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHhhccCCeEEEEecc
Q 044174          167 DMENFLNARAEEIVSGGMMVIIMPG  191 (332)
Q Consensus       167 d~~~fL~~Ra~EL~pGG~mvl~~~g  191 (332)
                      .+..|+..=.+-|+|||++++..+.
T Consensus       142 ~~~~fl~~~~~~Lk~~G~~~~i~p~  166 (421)
T 2ih2_A          142 LYGAFLEKAVRLLKPGGVLVFVVPA  166 (421)
T ss_dssp             HHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             HHHHHHHHHHHHhCCCCEEEEEECh
Confidence            3457788778889999999999864

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=95.01  E-value=0.039  Score=54.72  Aligned_cols=127  Identities=13%  Similarity=0.031  Sum_probs=62.4

Q ss_pred             CceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCccccC
Q 044174           29 NIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHR  108 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~~  108 (332)
                      ...+|+|+|||+|.-|+.+++.+-                ..-.|+-+|.-..=-..+=+++....-- +..+-++...-
T Consensus       101 ~g~~VLDlgaGpG~kt~~LA~~~~----------------~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l  163 (464)
T 3m6w_A          101 PGERVLDLAAAPGGKTTHLAARMG----------------GKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRAL  163 (464)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHTT----------------TCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHH
T ss_pred             CCCEEEEEcCCcCHHHHHHHHhCC----------------CCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHh
Confidence            357999999999999988864310                1123444443222211111111110000 22222332221


Q ss_pred             C-cCCCceeEEEec---CccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCe
Q 044174          109 L-FPQSSIHFAHCS---YALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGM  184 (332)
Q Consensus       109 l-fP~~svd~~~S~---~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~  184 (332)
                      . +.++++|.|++.   ....-+.+.|.....              .++..+     ....+.-..+|+.=++-|+|||+
T Consensus       164 ~~~~~~~FD~Il~D~PcSg~G~~rr~pd~~~~--------------~~~~~~-----~~l~~~Q~~iL~~a~~~LkpGG~  224 (464)
T 3m6w_A          164 AEAFGTYFHRVLLDAPCSGEGMFRKDREAARH--------------WGPSAP-----KRMAEVQKALLAQASRLLGPGGV  224 (464)
T ss_dssp             HHHHCSCEEEEEEECCCCCGGGTTTCTTSGGG--------------CCTTHH-----HHHHHHHHHHHHHHHTTEEEEEE
T ss_pred             hhhccccCCEEEECCCcCCccccccChHHhhh--------------cCHHHH-----HHHHHHHHHHHHHHHHhcCCCcE
Confidence            1 235689999862   223333333432211              011111     22223335678877788999999


Q ss_pred             EEEEecc
Q 044174          185 MVIIMPG  191 (332)
Q Consensus       185 mvl~~~g  191 (332)
                      ||.....
T Consensus       225 LvysTCs  231 (464)
T 3m6w_A          225 LVYSTCT  231 (464)
T ss_dssp             EEEEESC
T ss_pred             EEEEecc
Confidence            9987543

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=94.89  E-value=0.062  Score=45.85  Aligned_cols=76  Identities=9%  Similarity=-0.162  Sum_probs=38.3

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCcccc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHH  107 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~  107 (332)
                      ....+|+|+|||+|..++.+...                  +.-+|+-.|.-. +.-...+....    -+..+-+++..
T Consensus        50 ~~~~~vlD~gcG~G~~~~~l~~~------------------~~~~v~~vD~~~-~~~~~a~~~~~----~~~~~~~d~~~  106 (200)
T 1ne2_A           50 IGGRSVIDAGTGNGILACGSYLL------------------GAESVTAFDIDP-DAIETAKRNCG----GVNFMVADVSE  106 (200)
T ss_dssp             SBTSEEEEETCTTCHHHHHHHHT------------------TBSEEEEEESCH-HHHHHHHHHCT----TSEEEECCGGG
T ss_pred             CCCCEEEEEeCCccHHHHHHHHc------------------CCCEEEEEECCH-HHHHHHHHhcC----CCEEEECcHHH
Confidence            34579999999999988776432                  011233333211 11111111111    12223344443


Q ss_pred             CCcCCCceeEEEecCccccccC
Q 044174          108 RLFPQSSIHFAHCSYALHWLSK  129 (332)
Q Consensus       108 ~lfP~~svd~~~S~~alHWLs~  129 (332)
                        +| +++|+++++-.+||++.
T Consensus       107 --~~-~~~D~v~~~~p~~~~~~  125 (200)
T 1ne2_A          107 --IS-GKYDTWIMNPPFGSVVK  125 (200)
T ss_dssp             --CC-CCEEEEEECCCC-----
T ss_pred             --CC-CCeeEEEECCCchhccC
Confidence              24 68999999999999754

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=94.74  E-value=0.097  Score=47.64  Aligned_cols=22  Identities=18%  Similarity=0.144  Sum_probs=18.6

Q ss_pred             CCceEEEeecCCCCcchHHHHH
Q 044174           28 SNIIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~   49 (332)
                      .+.-+|+|+|||+|..|+.++.
T Consensus       118 ~~~~~VLDlgcG~G~~s~~la~  139 (272)
T 3a27_A          118 NENEVVVDMFAGIGYFTIPLAK  139 (272)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHH
T ss_pred             CCCCEEEEecCcCCHHHHHHHH
Confidence            3457999999999999998864

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=94.54  E-value=0.18  Score=52.52  Aligned_cols=29  Identities=10%  Similarity=0.167  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHHHhhccCCeEEEEeccc
Q 044174          164 FAKDMENFLNARAEEIVSGGMMVIIMPGI  192 (332)
Q Consensus       164 ~~~d~~~fL~~Ra~EL~pGG~mvl~~~gr  192 (332)
                      ..+|...+++.=.+-|+|||++++....+
T Consensus       632 ~~~~~~~ll~~a~~~LkpgG~L~~s~~~~  660 (703)
T 3v97_A          632 VQRDHLALMKDLKRLLRAGGTIMFSNNKR  660 (703)
T ss_dssp             HHHHHHHHHHHHHHHEEEEEEEEEEECCT
T ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEECCc
Confidence            45677788888889999999999887553

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=94.51  E-value=0.032  Score=50.75  Aligned_cols=22  Identities=23%  Similarity=0.238  Sum_probs=18.6

Q ss_pred             CCceEEEeecCCCCcchHHHHH
Q 044174           28 SNIIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~   49 (332)
                      ++.-+|+|+|||+|.-++.++.
T Consensus        20 ~~g~~VlDIGtGsG~l~i~la~   41 (244)
T 3gnl_A           20 TKNERIADIGSDHAYLPCFAVK   41 (244)
T ss_dssp             CSSEEEEEETCSTTHHHHHHHH
T ss_pred             CCCCEEEEECCccHHHHHHHHH
Confidence            4458999999999999998863

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=94.31  E-value=0.038  Score=49.84  Aligned_cols=22  Identities=27%  Similarity=0.232  Sum_probs=18.6

Q ss_pred             CCceEEEeecCCCCcchHHHHH
Q 044174           28 SNIIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~   49 (332)
                      ++.-+|+|+|||+|.-++.++.
T Consensus        20 ~~g~~VlDIGtGsG~l~i~la~   41 (230)
T 3lec_A           20 PKGARLLDVGSDHAYLPIFLLQ   41 (230)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHH
T ss_pred             CCCCEEEEECCchHHHHHHHHH
Confidence            3458999999999999998863

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=94.26  E-value=0.12  Score=47.42  Aligned_cols=21  Identities=14%  Similarity=0.268  Sum_probs=18.2

Q ss_pred             CceEEEeecCCCCcchHHHHH
Q 044174           29 NIIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~   49 (332)
                      ..-+|+|+|||+|..|..+.+
T Consensus        28 ~~~~VLDiG~G~G~lt~~L~~   48 (285)
T 1zq9_A           28 PTDVVLEVGPGTGNMTVKLLE   48 (285)
T ss_dssp             TTCEEEEECCTTSTTHHHHHH
T ss_pred             CCCEEEEEcCcccHHHHHHHh
Confidence            456899999999999998874

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=94.16  E-value=0.14  Score=47.63  Aligned_cols=21  Identities=14%  Similarity=0.055  Sum_probs=18.3

Q ss_pred             CceEEEeecCCCCcchHHHHH
Q 044174           29 NIIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~   49 (332)
                      ..-+|+|+|||+|..|..+++
T Consensus        50 ~~~~VLEIG~G~G~lT~~La~   70 (295)
T 3gru_A           50 KDDVVLEIGLGKGILTEELAK   70 (295)
T ss_dssp             TTCEEEEECCTTSHHHHHHHH
T ss_pred             CcCEEEEECCCchHHHHHHHh
Confidence            356899999999999999875

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=94.08  E-value=0.16  Score=50.30  Aligned_cols=22  Identities=18%  Similarity=0.172  Sum_probs=18.5

Q ss_pred             CceEEEeecCCCCcchHHHHHH
Q 044174           29 NIIRLADLGCAVGSNTINAMQD   50 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~~   50 (332)
                      ...+|+|+|||+|.-|+.+++.
T Consensus       105 ~g~~VLDlcaGpGgkt~~lA~~  126 (456)
T 3m4x_A          105 PGEKVLDLCAAPGGKSTQLAAQ  126 (456)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHH
T ss_pred             CCCEEEEECCCcCHHHHHHHHH
Confidence            3579999999999999887653

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=93.88  E-value=0.23  Score=47.33  Aligned_cols=35  Identities=20%  Similarity=0.145  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHhhhhcccCCCCCceEEEeecCCCCcchHHHHH
Q 044174            8 KEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus         8 ~~~l~~ai~~~~~~~~~~~~~~~~~iaD~GCs~G~ns~~~~~   49 (332)
                      ++.+..++..+. .      ....+|+|+|||+|..++.++.
T Consensus       203 ~~~la~~l~~~~-~------~~~~~vLD~gCGsG~~~i~~a~  237 (373)
T 3tm4_A          203 KASIANAMIELA-E------LDGGSVLDPMCGSGTILIELAL  237 (373)
T ss_dssp             CHHHHHHHHHHH-T------CCSCCEEETTCTTCHHHHHHHH
T ss_pred             cHHHHHHHHHhh-c------CCCCEEEEccCcCcHHHHHHHH
Confidence            445555554443 1      3346899999999999887753

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=93.87  E-value=0.53  Score=43.45  Aligned_cols=21  Identities=33%  Similarity=0.368  Sum_probs=17.0

Q ss_pred             CceEEEeecCCCCcchHHHHH
Q 044174           29 NIIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~   49 (332)
                      ...+|+|||||.|.-|..++.
T Consensus        74 ~~~~VLDLGaAPGGWSQvAa~   94 (277)
T 3evf_A           74 LEGRVIDLGCGRGGWCYYAAA   94 (277)
T ss_dssp             CCEEEEEETCTTCHHHHHHHT
T ss_pred             CCCEEEEecCCCCHHHHHHHH
Confidence            345899999999999976543

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=93.82  E-value=0.27  Score=41.79  Aligned_cols=79  Identities=14%  Similarity=0.034  Sum_probs=41.7

Q ss_pred             CceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCccccC
Q 044174           29 NIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHR  108 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~~  108 (332)
                      +.-+|+|+|||+|..++.+...            +    .  -+|+-.|.-. +.-...+........-+..+-+++.. 
T Consensus        49 ~~~~vlD~g~G~G~~~~~l~~~------------~----~--~~v~~vD~~~-~~~~~a~~~~~~~~~~~~~~~~d~~~-  108 (207)
T 1wy7_A           49 EGKVVADLGAGTGVLSYGALLL------------G----A--KEVICVEVDK-EAVDVLIENLGEFKGKFKVFIGDVSE-  108 (207)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHT------------T----C--SEEEEEESCH-HHHHHHHHHTGGGTTSEEEEESCGGG-
T ss_pred             CcCEEEEeeCCCCHHHHHHHHc------------C----C--CEEEEEECCH-HHHHHHHHHHHHcCCCEEEEECchHH-
Confidence            4569999999999988876432            0    0  1334444311 11111111111001112333444444 


Q ss_pred             CcCCCceeEEEecCccccccC
Q 044174          109 LFPQSSIHFAHCSYALHWLSK  129 (332)
Q Consensus       109 lfP~~svd~~~S~~alHWLs~  129 (332)
                       +| +++|+++++-.+|+.++
T Consensus       109 -~~-~~~D~v~~~~p~~~~~~  127 (207)
T 1wy7_A          109 -FN-SRVDIVIMNPPFGSQRK  127 (207)
T ss_dssp             -CC-CCCSEEEECCCCSSSST
T ss_pred             -cC-CCCCEEEEcCCCccccC
Confidence             23 48999999988888653

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=93.71  E-value=0.16  Score=46.11  Aligned_cols=52  Identities=19%  Similarity=0.358  Sum_probs=39.7

Q ss_pred             CceEEEeecCCCCcchHHHH------------HHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHH
Q 044174           29 NIIRLADLGCAVGSNTINAM------------QDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTL   86 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~------------~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~l   86 (332)
                      ..-+|+|+|||+|..|..++            ...++.+++.+..      .+.++++..|...-||..+
T Consensus        29 ~~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~~~~~------~~~v~~i~~D~~~~~~~~~   92 (255)
T 3tqs_A           29 KTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQ------QKNITIYQNDALQFDFSSV   92 (255)
T ss_dssp             TTCEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHHHHTT------CTTEEEEESCTTTCCGGGS
T ss_pred             CcCEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHhh------CCCcEEEEcchHhCCHHHh
Confidence            35689999999999999987            4456666665432      3469999999998887663

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=93.42  E-value=0.36  Score=46.24  Aligned_cols=26  Identities=8%  Similarity=0.201  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHhhccCCeEEEEecc
Q 044174          166 KDMENFLNARAEEIVSGGMMVIIMPG  191 (332)
Q Consensus       166 ~d~~~fL~~Ra~EL~pGG~mvl~~~g  191 (332)
                      +++..++..-.+-|+|||.+++....
T Consensus       316 ~~~~~~l~~~~~~LkpgG~l~~~~~~  341 (396)
T 3c0k_A          316 RGYKDINMLAIQLLNEGGILLTFSCS  341 (396)
T ss_dssp             THHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             HHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            46667788788899999999988743

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=93.20  E-value=0.46  Score=45.10  Aligned_cols=103  Identities=8%  Similarity=-0.023  Sum_probs=56.7

Q ss_pred             ceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhc-Ccccccc-eeeecCCcccc
Q 044174           30 IIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTS-LPQQREY-YSAGVPGSFHH  107 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~-l~~~~~~-f~~~vpgSFy~  107 (332)
                      ..+|+|+| |+|..++.+...                 .+.-+|+.-|+-. +.-.+.+. +... .. -+..+.|.+..
T Consensus       173 ~~~VLDlG-G~G~~~~~la~~-----------------~~~~~v~~vDi~~-~~l~~a~~~~~~~-g~~~v~~~~~D~~~  232 (373)
T 2qm3_A          173 NKDIFVLG-DDDLTSIALMLS-----------------GLPKRIAVLDIDE-RLTKFIEKAANEI-GYEDIEIFTFDLRK  232 (373)
T ss_dssp             TCEEEEES-CTTCHHHHHHHH-----------------TCCSEEEEECSCH-HHHHHHHHHHHHH-TCCCEEEECCCTTS
T ss_pred             CCEEEEEC-CCCHHHHHHHHh-----------------CCCCEEEEEECCH-HHHHHHHHHHHHc-CCCCEEEEEChhhh
Confidence            47999999 999999876421                 0123455555421 11111111 1100 00 23445555554


Q ss_pred             CC--cCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeE
Q 044174          108 RL--FPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMM  185 (332)
Q Consensus       108 ~l--fP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~m  185 (332)
                      .+  .+++++|+|+++..+|+.                                       +...||+.=.+-|+|||++
T Consensus       233 ~l~~~~~~~fD~Vi~~~p~~~~---------------------------------------~~~~~l~~~~~~LkpgG~~  273 (373)
T 2qm3_A          233 PLPDYALHKFDTFITDPPETLE---------------------------------------AIRAFVGRGIATLKGPRCA  273 (373)
T ss_dssp             CCCTTTSSCBSEEEECCCSSHH---------------------------------------HHHHHHHHHHHTBCSTTCE
T ss_pred             hchhhccCCccEEEECCCCchH---------------------------------------HHHHHHHHHHHHcccCCeE
Confidence            22  124689999996544431                                       1256777778899999965


Q ss_pred             -EEEecc
Q 044174          186 -VIIMPG  191 (332)
Q Consensus       186 -vl~~~g  191 (332)
                       ++.+..
T Consensus       274 ~~~~~~~  280 (373)
T 2qm3_A          274 GYFGITR  280 (373)
T ss_dssp             EEEEECT
T ss_pred             EEEEEec
Confidence             665543

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=93.10  E-value=0.75  Score=46.31  Aligned_cols=144  Identities=11%  Similarity=0.179  Sum_probs=66.8

Q ss_pred             ceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcC--cccccceeeecCCcccc
Q 044174           30 IIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSL--PQQREYYSAGVPGSFHH  107 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l--~~~~~~f~~~vpgSFy~  107 (332)
                      ..+|+|.+||+|.-.+.++..+.+.-........  ......+++-.|+-..=....-.++  .....-+-...+-++..
T Consensus       245 ~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~--~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~  322 (544)
T 3khk_A          245 KGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNAS--EQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLD  322 (544)
T ss_dssp             SEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHH--HHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTS
T ss_pred             CCeEeCcccCcCcHHHHHHHHHHHhccccccchH--HHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcC
Confidence            3599999999998777766554432211100000  0011456666665322111110111  01000111123344556


Q ss_pred             CCcCCCceeEEEecCcc---ccccCCccccccCCCCCCCCCc---eeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 044174          108 RLFPQSSIHFAHCSYAL---HWLSKVPEELLDENSPAWNKGR---IHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVS  181 (332)
Q Consensus       108 ~lfP~~svd~~~S~~al---HWLs~~P~~~~~~~~~~~nkg~---i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~p  181 (332)
                      ..++...+|+|.+|=-+   .|-..   .+..  .+.+.-|.   .... .++.        ...|+ .|+..-.+-|+|
T Consensus       323 ~~~~~~~fD~Iv~NPPf~~~~~~~~---~~~~--d~r~~~g~~~~~~~~-~~~~--------~~~~~-~Fl~~~l~~Lk~  387 (544)
T 3khk_A          323 DQHPDLRADFVMTNPPFNMKDWWHE---KLAD--DPRWTINTNGEKRIL-TPPT--------GNANF-AWMLHMLYHLAP  387 (544)
T ss_dssp             CSCTTCCEEEEEECCCSSCCSCCCG---GGTT--CGGGEECCC--CEEC-CCCT--------TCTHH-HHHHHHHHTEEE
T ss_pred             cccccccccEEEECCCcCCccccch---hhhh--hhhhhcCcccccccc-cCCC--------cchhH-HHHHHHHHHhcc
Confidence            66788999999996322   25321   1110  00000000   0000 0000        01122 478877888999


Q ss_pred             CCeEEEEec
Q 044174          182 GGMMVIIMP  190 (332)
Q Consensus       182 GG~mvl~~~  190 (332)
                      ||+++++++
T Consensus       388 gGr~aiVlP  396 (544)
T 3khk_A          388 TGSMALLLA  396 (544)
T ss_dssp             EEEEEEEEE
T ss_pred             CceEEEEec
Confidence            999999985

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=92.97  E-value=0.2  Score=46.29  Aligned_cols=20  Identities=20%  Similarity=0.503  Sum_probs=17.4

Q ss_pred             CceEEEeecCCCCcchHHHH
Q 044174           29 NIIRLADLGCAVGSNTINAM   48 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~   48 (332)
                      ..-+|+|+|||+|..|..+.
T Consensus        42 ~~~~VLDiG~G~G~lt~~La   61 (299)
T 2h1r_A           42 SSDIVLEIGCGTGNLTVKLL   61 (299)
T ss_dssp             TTCEEEEECCTTSTTHHHHT
T ss_pred             CcCEEEEEcCcCcHHHHHHH
Confidence            35699999999999998875

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=92.37  E-value=0.19  Score=50.75  Aligned_cols=21  Identities=29%  Similarity=0.533  Sum_probs=18.2

Q ss_pred             CCceEEEeecCCCCcchHHHH
Q 044174           28 SNIIRLADLGCAVGSNTINAM   48 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~   48 (332)
                      ..+.+|+|+|||.|-.|..+.
T Consensus        65 ~~~~~vLDvGCG~G~~~~~la   85 (569)
T 4azs_A           65 GRPLNVLDLGCAQGFFSLSLA   85 (569)
T ss_dssp             TSCCEEEEETCTTSHHHHHHH
T ss_pred             CCCCeEEEECCCCcHHHHHHH
Confidence            456899999999999888776

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=91.89  E-value=1.5  Score=42.56  Aligned_cols=23  Identities=17%  Similarity=0.225  Sum_probs=18.6

Q ss_pred             CceEEEeecCCCCcchHHHHHHH
Q 044174           29 NIIRLADLGCAVGSNTINAMQDV   51 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~~i   51 (332)
                      ...+|+|.|||+|.-.+.+.+.+
T Consensus       171 ~~~~VlDpacGsG~fl~~~~~~l  193 (445)
T 2okc_A          171 MGETVCDPACGTGGFLLTAYDYM  193 (445)
T ss_dssp             TTCCEEETTCTTCHHHHHHHHHH
T ss_pred             CCCEEeccCCCcchHHHHHHHHH
Confidence            35799999999999887776654

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=91.86  E-value=0.43  Score=49.11  Aligned_cols=24  Identities=21%  Similarity=0.282  Sum_probs=19.0

Q ss_pred             CCCceEEEeecCCCCcchHHHHHH
Q 044174           27 ASNIIRLADLGCAVGSNTINAMQD   50 (332)
Q Consensus        27 ~~~~~~iaD~GCs~G~ns~~~~~~   50 (332)
                      ..+..+|+|+|||+|+-+...+++
T Consensus       355 ~~~~~vVldVGaGrGpLv~~al~A  378 (637)
T 4gqb_A          355 DTNVQVLMVLGAGRGPLVNASLRA  378 (637)
T ss_dssp             TTCEEEEEEESCTTSHHHHHHHHH
T ss_pred             cCCCcEEEEECCCCcHHHHHHHHH
Confidence            355689999999999997666554

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=91.10  E-value=0.61  Score=43.70  Aligned_cols=19  Identities=21%  Similarity=0.093  Sum_probs=16.3

Q ss_pred             CceEEEeecCCCCcchHHHH
Q 044174           29 NIIRLADLGCAVGSNTINAM   48 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~   48 (332)
                      ..-+|+|+|||+|..++. +
T Consensus       195 ~~~~VLDlg~G~G~~~l~-a  213 (336)
T 2yx1_A          195 LNDVVVDMFAGVGPFSIA-C  213 (336)
T ss_dssp             TTCEEEETTCTTSHHHHH-T
T ss_pred             CCCEEEEccCccCHHHHh-c
Confidence            356999999999999987 5

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=90.76  E-value=3.7  Score=41.27  Aligned_cols=22  Identities=27%  Similarity=0.487  Sum_probs=18.5

Q ss_pred             HHHHHHHHhhc-cCCeEEEEecc
Q 044174          170 NFLNARAEEIV-SGGMMVIIMPG  191 (332)
Q Consensus       170 ~fL~~Ra~EL~-pGG~mvl~~~g  191 (332)
                      .|+..-.+-|+ +||+++++++.
T Consensus       338 ~Fl~~~l~~Lk~~gGr~a~VlP~  360 (542)
T 3lkd_A          338 AFLLHGYYHLKQDNGVMAIVLPH  360 (542)
T ss_dssp             HHHHHHHHTBCTTTCEEEEEEET
T ss_pred             HHHHHHHHHhCCCceeEEEEecc
Confidence            47777778899 99999999864

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=89.19  E-value=0.44  Score=43.64  Aligned_cols=47  Identities=13%  Similarity=0.210  Sum_probs=30.9

Q ss_pred             EEEeecCCCCcchHHHHHH------------HHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHH
Q 044174           32 RLADLGCAVGSNTINAMQD------------VLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNT   85 (332)
Q Consensus        32 ~iaD~GCs~G~ns~~~~~~------------ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~   85 (332)
                      +|+|+|||+|..|..+++.            .++.+++++.       ...++++..|.-.-||..
T Consensus        49 ~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~~~~~-------~~~v~vi~~D~l~~~~~~  107 (271)
T 3fut_A           49 PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLEETLS-------GLPVRLVFQDALLYPWEE  107 (271)
T ss_dssp             CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHHHHTT-------TSSEEEEESCGGGSCGGG
T ss_pred             eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcC-------CCCEEEEECChhhCChhh
Confidence            9999999999999988753            3333333321       134677777766555543

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=89.06  E-value=0.75  Score=40.97  Aligned_cols=21  Identities=19%  Similarity=0.308  Sum_probs=18.2

Q ss_pred             CceEEEeecCCCCcchHHHHH
Q 044174           29 NIIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~   49 (332)
                      ..-+|+|+|||+|..|..+++
T Consensus        30 ~~~~VLDiG~G~G~lt~~l~~   50 (244)
T 1qam_A           30 EHDNIFEIGSGKGHFTLELVQ   50 (244)
T ss_dssp             TTCEEEEECCTTSHHHHHHHH
T ss_pred             CCCEEEEEeCCchHHHHHHHH
Confidence            456899999999999998875

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=88.86  E-value=0.58  Score=43.01  Aligned_cols=28  Identities=21%  Similarity=0.465  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHHHHhhccCCeEEEEec
Q 044174          163 QFAKDMENFLNARAEEIVSGGMMVIIMP  190 (332)
Q Consensus       163 q~~~d~~~fL~~Ra~EL~pGG~mvl~~~  190 (332)
                      .+..++..+++.=.+-|+|||.+++...
T Consensus        71 ~~l~~l~~~~~~~~rvLk~~G~l~i~~~   98 (297)
T 2zig_A           71 AFLDELDRVWREVFRLLVPGGRLVIVVG   98 (297)
T ss_dssp             HHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHcCCCcEEEEEEC
Confidence            3445566677776788999999999985

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=88.78  E-value=0.76  Score=41.46  Aligned_cols=51  Identities=14%  Similarity=0.219  Sum_probs=32.4

Q ss_pred             ceEEEeecCCCCcchHHHHH-------------HHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHH
Q 044174           30 IIRLADLGCAVGSNTINAMQ-------------DVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLF   87 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~~-------------~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf   87 (332)
                      .-+|+|+|||+|..|. +..             ..++.++++.      ...+.++++..|.-.-||..+|
T Consensus        22 ~~~VLEIG~G~G~lt~-l~~~~~~~v~avEid~~~~~~a~~~~------~~~~~v~~i~~D~~~~~~~~~~   85 (252)
T 1qyr_A           22 GQAMVEIGPGLAALTE-PVGERLDQLTVIELDRDLAARLQTHP------FLGPKLTIYQQDAMTFNFGELA   85 (252)
T ss_dssp             TCCEEEECCTTTTTHH-HHHTTCSCEEEECCCHHHHHHHHTCT------TTGGGEEEECSCGGGCCHHHHH
T ss_pred             cCEEEEECCCCcHHHH-hhhCCCCeEEEEECCHHHHHHHHHHh------ccCCceEEEECchhhCCHHHhh
Confidence            4689999999999999 421             1111111111      0124688888888888887655

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=88.06  E-value=4  Score=37.98  Aligned_cols=22  Identities=32%  Similarity=0.407  Sum_probs=18.7

Q ss_pred             CCceEEEeecCCCCcchHHHHH
Q 044174           28 SNIIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~   49 (332)
                      .+..+|+|||||.|+-|-.+++
T Consensus        80 ~~g~~vlDLGaaPGgWsqva~~  101 (300)
T 3eld_A           80 RITGRVLDLGCGRGGWSYYAAA  101 (300)
T ss_dssp             CCCEEEEEETCTTCHHHHHHHT
T ss_pred             CCCCEEEEcCCCCCHHHHHHHH
Confidence            4568999999999999977754

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=87.54  E-value=4.7  Score=42.75  Aligned_cols=24  Identities=29%  Similarity=0.415  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHhhccCCeEEEEecc
Q 044174          168 MENFLNARAEEIVSGGMMVIIMPG  191 (332)
Q Consensus       168 ~~~fL~~Ra~EL~pGG~mvl~~~g  191 (332)
                      ...|+..=.+-|++||++++.++.
T Consensus       444 y~aFIe~Al~lLKpGGrLAfIlP~  467 (878)
T 3s1s_A          444 EALFLELVTELVQDGTVISAIMPK  467 (878)
T ss_dssp             HHHHHHHHHHHSCTTCEEEEEEET
T ss_pred             HHHHHHHHHHhcCCCcEEEEEECh
Confidence            456888888889999999999964

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=86.72  E-value=2.1  Score=40.96  Aligned_cols=20  Identities=20%  Similarity=-0.017  Sum_probs=17.6

Q ss_pred             ceEEEeecCCCCcchHHHHH
Q 044174           30 IIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~~   49 (332)
                      ..+|+|+|||+|.-++.++.
T Consensus        48 ~~~VLDl~aGtG~~~l~~a~   67 (378)
T 2dul_A           48 PKIVLDALSATGIRGIRFAL   67 (378)
T ss_dssp             CSEEEESSCTTSHHHHHHHH
T ss_pred             CCEEEECCCchhHHHHHHHH
Confidence            46899999999999998864

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=86.53  E-value=3.2  Score=39.84  Aligned_cols=21  Identities=24%  Similarity=0.197  Sum_probs=17.3

Q ss_pred             CceEEEeecCCCCcchHHHHH
Q 044174           29 NIIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~   49 (332)
                      ...+|+|.|||+|.-.+.++.
T Consensus       201 ~~~~vlDp~CGSGt~~ieaa~  221 (393)
T 3k0b_A          201 PDRPFYDPVCGSGTIPIEAAL  221 (393)
T ss_dssp             TTSCEEETTCTTSHHHHHHHH
T ss_pred             CCCeEEEcCCCCCHHHHHHHH
Confidence            357899999999998877754

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=85.68  E-value=4.3  Score=38.74  Aligned_cols=22  Identities=27%  Similarity=0.163  Sum_probs=18.0

Q ss_pred             CceEEEeecCCCCcchHHHHHH
Q 044174           29 NIIRLADLGCAVGSNTINAMQD   50 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~~   50 (332)
                      ...+|+|.|||+|.-.+.++..
T Consensus       195 ~~~~vlDp~CGSGt~lieaa~~  216 (385)
T 3ldu_A          195 AGRVLVDPMCGSGTILIEAAMI  216 (385)
T ss_dssp             TTSCEEETTCTTCHHHHHHHHH
T ss_pred             CCCeEEEcCCCCCHHHHHHHHH
Confidence            3578999999999988887643

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=85.28  E-value=0.76  Score=41.32  Aligned_cols=22  Identities=18%  Similarity=0.188  Sum_probs=18.4

Q ss_pred             CceEEEeecCCCCcchHHHHHH
Q 044174           29 NIIRLADLGCAVGSNTINAMQD   50 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~~   50 (332)
                      ..-+|+|+|||+|..|..+++.
T Consensus        31 ~~~~VLDiG~G~G~lt~~L~~~   52 (249)
T 3ftd_A           31 EGNTVVEVGGGTGNLTKVLLQH   52 (249)
T ss_dssp             TTCEEEEEESCHHHHHHHHTTS
T ss_pred             CcCEEEEEcCchHHHHHHHHHc
Confidence            3568999999999999888643

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=85.27  E-value=0.88  Score=41.73  Aligned_cols=50  Identities=14%  Similarity=0.228  Sum_probs=33.4

Q ss_pred             CceEEEeecCCCCcchHHHHHHHH----------------HHHHHhhhhcCCCCCCCceEEEecCCCCCchHHH
Q 044174           29 NIIRLADLGCAVGSNTINAMQDVL----------------EVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTL   86 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~~ii----------------~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~l   86 (332)
                      ..-+|+|+|||+|..|..+++..-                +.+++..        .+.++++..|.-.-||..+
T Consensus        42 ~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~--------~~~v~~i~~D~~~~~~~~~  107 (279)
T 3uzu_A           42 RGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF--------GELLELHAGDALTFDFGSI  107 (279)
T ss_dssp             TTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH--------GGGEEEEESCGGGCCGGGG
T ss_pred             CcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc--------CCCcEEEECChhcCChhHh
Confidence            356999999999999999876431                2222221        1357777777777776654

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=84.58  E-value=0.75  Score=40.73  Aligned_cols=23  Identities=13%  Similarity=0.123  Sum_probs=19.3

Q ss_pred             CCceEEEeecCCCCcchHHHHHH
Q 044174           28 SNIIRLADLGCAVGSNTINAMQD   50 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~   50 (332)
                      ...-+|+|+|||+|..|..+.+.
T Consensus        28 ~~~~~VLDiG~G~G~~~~~l~~~   50 (245)
T 1yub_A           28 KETDTVYEIGTGKGHLTTKLAKI   50 (245)
T ss_dssp             CSSEEEEECSCCCSSCSHHHHHH
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHh
Confidence            34579999999999999988654

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=84.19  E-value=3.7  Score=39.33  Aligned_cols=21  Identities=24%  Similarity=0.268  Sum_probs=17.4

Q ss_pred             CceEEEeecCCCCcchHHHHH
Q 044174           29 NIIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~   49 (332)
                      ..-.|+|.+||+|.-.+.++.
T Consensus       194 ~~~~llDp~CGSGt~lIEAa~  214 (384)
T 3ldg_A          194 PDKPFVDPTCGSGTFCIEAAM  214 (384)
T ss_dssp             TTSCEEETTCTTSHHHHHHHH
T ss_pred             CCCeEEEeCCcCCHHHHHHHH
Confidence            347899999999998887764

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=83.44  E-value=2.1  Score=42.96  Aligned_cols=23  Identities=17%  Similarity=0.008  Sum_probs=18.8

Q ss_pred             CceEEEeecCCCCcchHHHHHHH
Q 044174           29 NIIRLADLGCAVGSNTINAMQDV   51 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~~i   51 (332)
                      ...+|+|.+||+|.-.+.+...+
T Consensus       169 ~~~~VlDPaCGSG~fLi~a~~~l  191 (541)
T 2ar0_A          169 PREVVQDPAAGTAGFLIEADRYV  191 (541)
T ss_dssp             TTCCEEETTCTTTHHHHHHHHHH
T ss_pred             CCCeEecCCcccchHHHHHHHHH
Confidence            35799999999999887776654

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=82.17  E-value=4.5  Score=39.06  Aligned_cols=21  Identities=29%  Similarity=0.349  Sum_probs=18.0

Q ss_pred             CceEEEeecCCCCcchHHHHH
Q 044174           29 NIIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~~   49 (332)
                      +.-+|+|+|||+|..++.+..
T Consensus       286 ~~~~VLDlgcG~G~~~~~la~  306 (433)
T 1uwv_A          286 PEDRVLDLFCGMGNFTLPLAT  306 (433)
T ss_dssp             TTCEEEEESCTTTTTHHHHHT
T ss_pred             CCCEEEECCCCCCHHHHHHHh
Confidence            346899999999999998873

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	332
d1m6ex_	359	c.66.1.35 (X:) Salicylic acid carboxyl methyltrans	4e-97

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} Length = 359

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

 Score =  289 bits (741), Expect = 4e-97
 Identities = 107/347 (30%), Positives = 171/347 (49%), Gaps = 30/347 (8%)

Query: 1   RLAADAVKEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQDVLEVIKNKCH 60
           R      K     AIT    +    + +  + +ADLGC+ G N + A+ ++++ ++    
Sbjct: 26  RQVISITKPITEAAIT---ALYSGDTVTTRLAIADLGCSSGPNALFAVTELIKTVEELRK 82

Query: 61  SQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQRE----YYSAGVPGSFHHRLFPQSSIH 116
                +  PE+Q+F ND   NDFN +F SLP + +     +  GVPGSF+ RLFP++++H
Sbjct: 83  KMGRENS-PEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYGRLFPRNTLH 141

Query: 117 FAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAA-EEVVNAYASQFAKDMENFLNAR 175
           F H SY+L WLS+VP  +        NKG I+  N   + V+NAY  QF +D   FL  R
Sbjct: 142 FIHSSYSLMWLSQVPIGI------ESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCR 195

Query: 176 AEEIVSGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPI 235
           A+E+V GG MV+ + G       S     +++ L+A    ++ +E LI E ++D FN+P 
Sbjct: 196 AQEVVPGGRMVLTILGRRSEDRASTEC-CLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQ 254

Query: 236 YSASSEEMVKLVDKNGHFSIKTVELTNPTSWLEGPIDI----------KAWTMHVRAAME 285
           Y+ S  E+   + K G F I  +E +    W     D                 +RA  E
Sbjct: 255 YTPSPTEVEAEILKEGSFLIDHIEAS-EIYWSSCTKDGDGGGSVEEEGYNVARCMRAVAE 313

Query: 286 AMFSKHFRIEIIDEMFNRLIRRLFEFSDKVESGYKEKTQLFVILMRK 332
            +   HF   II+++F+R    + E   K ++ +     + V L+RK
Sbjct: 314 PLLLDHFGEAIIEDVFHRYKLLIIERMSKEKTKF---INVIVSLIRK 357

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	332
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	100.0
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.24
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.21
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.14
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.12
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.08
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.06
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.05
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.04
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.04
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	98.99
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	98.97
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	98.95
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	98.95
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	98.93
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	98.93
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	98.91
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	98.89
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	98.87
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	98.85
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	98.77
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.71
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	98.69
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	98.61
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	98.58
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	98.49
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	98.48
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.43
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.41
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	98.38
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	98.33
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	98.09
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	98.0
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	97.95
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	97.94
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	97.9
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	97.87
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	97.87
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	97.87
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	97.84
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	97.79
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	97.77
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	97.74
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	97.73
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	97.63
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	97.6
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	97.55
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	97.54
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	97.53
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	97.51
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	97.47
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	97.47
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	97.13
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	97.12
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	96.97
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	96.96
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	96.8
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	96.54
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	96.17
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	95.88
d2h00a1	250	Methyltransferase 10 domain containing protein MET	95.78
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	95.38
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	94.71
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	94.41
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	93.45
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	93.11
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	91.85
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	91.4
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	90.29
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	88.22
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	86.21
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	86.08
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	85.44
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	84.79
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	84.25
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	83.87
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	80.55

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=100.00  E-value=1.4e-96  Score=711.16  Aligned_cols=318  Identities=33%  Similarity=0.527  Sum_probs=292.2

Q ss_pred             ChhhhhhHHHHHHHHHHhhhhcccCCCCCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCC
Q 044174            1 RLAADAVKEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTS   80 (332)
Q Consensus         1 ~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~   80 (332)
                      |++|+++||+|++||.+++....   .+++++|||||||+|+||+.+|+.||++|+++|++.+. ..+|+|||||||||+
T Consensus        26 ~~~i~~~kp~leeai~~~~~~~~---~~~~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~-~~~pe~qvf~nDLP~  101 (359)
T d1m6ex_          26 RQVISITKPITEAAITALYSGDT---VTTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGR-ENSPEYQIFLNDLPG  101 (359)
T ss_dssp             HHHHHHTHHHHHHHHHHHHSSSS---SSSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSC-SSCCEEEEEEEECTT
T ss_pred             HHHHHHHHHHHHHHHHhcccCCC---CCCceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCC-CCCCeEEEEeCCCCc
Confidence            47899999999999999875432   47789999999999999999999999999999987543 357899999999999


Q ss_pred             CchHHHHhcCcccc----cceeeecCCccccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCC-CHH
Q 044174           81 NDFNTLFTSLPQQR----EYYSAGVPGSFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNA-AEE  155 (332)
Q Consensus        81 NDFn~lf~~l~~~~----~~f~~~vpgSFy~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~-~~~  155 (332)
                      ||||+||++||...    +||++|||||||+||||++|+||+||++|||||||+|+.+.+      |||+||+.++ +++
T Consensus       102 NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~------n~~~i~~~~~~~~~  175 (359)
T d1m6ex_         102 NDFNAIFRSLPIENDVDGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIES------NKGNIYMANTCPQS  175 (359)
T ss_dssp             SCHHHHHTTTTTSCSCTTCEEEEEEESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCC------CTTTTSSCSSSCCT
T ss_pred             chHHHHHHhccccccCCCCeEEEecCCchhhhcCCCCceEEeeehhhhhhhhcCCccccC------CCCcEEEcCCCCHH
Confidence            99999999998754    699999999999999999999999999999999999988764      7899999887 999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCc
Q 044174          156 VVNAYASQFAKDMENFLNARAEEIVSGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPI  235 (332)
Q Consensus       156 v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~  235 (332)
                      |.+||++||++||..||++||+||+|||+||++++||++.++.++ +.+.+|++|.++|+|||.||+|++|++|+||+|+
T Consensus       176 v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~gr~~~~~~~~-~~~~~~~~l~~al~dmv~eGlI~eek~dsfn~P~  254 (359)
T d1m6ex_         176 VLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRSEDRAST-ECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQ  254 (359)
T ss_dssp             TSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEECSSSSSSST-TTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEeccCCCCCCCC-ccchHHHHHHHHHHHHHHcCCCCHHHHHhccCcc
Confidence            999999999999999999999999999999999999999888765 6788999999999999999999999999999999


Q ss_pred             ccCCHHHHHHHHHhCCceEEeEEEEeC----CCCCC-----CCCccHHHHHHHHHHHHhhHHHhhhCHHHHHHHHHHHHH
Q 044174          236 YSASSEEMVKLVDKNGHFSIKTVELTN----PTSWL-----EGPIDIKAWTMHVRAAMEAMFSKHFRIEIIDEMFNRLIR  306 (332)
Q Consensus       236 y~ps~~E~~~~ie~~G~F~I~~le~~~----p~~~~-----~~~~~~~~~a~~iRa~~epll~~hfg~~i~delf~r~~~  306 (332)
                      |+||++|++++|+++|+|+|+++|+++    |....     +...+|+.+++++|||+||+|++|||++|+|+||+||++
T Consensus       255 Y~ps~eEv~~~ie~~gsF~i~~~e~~~~~~~~~~~~~~~~~d~~~~~~~~a~~~RA~~e~~l~~hfg~~i~D~lF~r~~~  334 (359)
T d1m6ex_         255 YTPSPTEVEAEILKEGSFLIDHIEASEIYWSSCTKDGDGGGSVEEEGYNVARCMRAVAEPLLLDHFGEAIIEDVFHRYKL  334 (359)
T ss_dssp             BCCCSHHHHHHHHHTTTBCCEEEEEEEEETTCCSSCTTCCSSTTTTTTHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHhccCCCeeeeeeEeeecccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHH
Confidence            999999999999999999999999876    22211     123578999999999999999999999999999999999


Q ss_pred             HHHhchhhhhcCCcceEEEEEEEEeC
Q 044174          307 RLFEFSDKVESGYKEKTQLFVILMRK  332 (332)
Q Consensus       307 ~v~~~l~~~~~~~~~~~~~~~~L~r~  332 (332)
                      ++++++..   ++.++++++++|+||
T Consensus       335 ~v~~~~~~---~~~~~~~~~~sL~rK  357 (359)
T d1m6ex_         335 LIIERMSK---EKTKFINVIVSLIRK  357 (359)
T ss_dssp             HHHHHHHS---SCCEEEEEEEEEEBC
T ss_pred             HHHhhHhh---cCCceEEEEEEEEec
Confidence            99999988   789999999999997

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=3e-11  Score=107.34  Aligned_cols=186  Identities=11%  Similarity=0.005  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHhhhhcccCCCCCceEEEeecCCCCcchHHHH-------------HHHHHHHHHhhhhcCCCCCCCceEEE
Q 044174            8 KEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAM-------------QDVLEVIKNKCHSQCPSSKLPEFQVF   74 (332)
Q Consensus         8 ~~~l~~ai~~~~~~~~~~~~~~~~~iaD~GCs~G~ns~~~~-------------~~ii~~i~~~~~~~~~~~~~~~~~v~   74 (332)
                      ..++...+.+.+...    ..+..+|+|+|||+|..++.+.             ...|+..++........-......-+
T Consensus        34 ~~~~~~~~~~~~~~~----~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~  109 (257)
T d2a14a1          34 LKFNLECLHKTFGPG----GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKF  109 (257)
T ss_dssp             HHHHHHHHHHHHSTT----SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHH
T ss_pred             HHHHHHHHHHHhccc----CCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHH
Confidence            444555555544322    4567899999999999887654             33455555544332100000000000


Q ss_pred             ecCCCCC--chHHHHhcCcc-cccceeeecCCccccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecC
Q 044174           75 FNDKTSN--DFNTLFTSLPQ-QREYYSAGVPGSFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTN  151 (332)
Q Consensus        75 ~nDlp~N--DFn~lf~~l~~-~~~~f~~~vpgSFy~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~  151 (332)
                      ..|+-.+  +...+-..+.. ........+..+.....+|.+++|+++|..++||+...+                    
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~--------------------  169 (257)
T d2a14a1         110 ACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSL--------------------  169 (257)
T ss_dssp             HHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSH--------------------
T ss_pred             HHHhccccchHHHHHHHHhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccH--------------------
Confidence            0000000  00000000000 002233445566667789999999999999999976532                    


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhccc
Q 044174          152 AAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSF  231 (332)
Q Consensus       152 ~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f  231 (332)
                                    .|+..+|+..++-|||||+|++......+..                              .....
T Consensus       170 --------------~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~------------------------------~~~~~  205 (257)
T d2a14a1         170 --------------DAYRAALCNLASLLKPGGHLVTTVTLRLPSY------------------------------MVGKR  205 (257)
T ss_dssp             --------------HHHHHHHHHHHTTEEEEEEEEEEEESSCCEE------------------------------EETTE
T ss_pred             --------------HHHHHHHHHHHhccCCCcEEEEEEecccccc------------------------------eeccc
Confidence                          3677889999999999999999876533210                              01122


Q ss_pred             CcCcccCCHHHHHHHHHhCCceEEeEEEEeC
Q 044174          232 NLPIYSASSEEMVKLVDKNGHFSIKTVELTN  262 (332)
Q Consensus       232 n~P~y~ps~~E~~~~ie~~G~F~I~~le~~~  262 (332)
                      ..++++.+.++++++++++| |+|..++...
T Consensus       206 ~~~~~~~~~~~~~~~l~~aG-f~v~~~~~~~  235 (257)
T d2a14a1         206 EFSCVALEKGEVEQAVLDAG-FDIEQLLHSP  235 (257)
T ss_dssp             EEECCCCCHHHHHHHHHHTT-EEEEEEEEEC
T ss_pred             cccccCCCHHHHHHHHHHCC-CEEEEEEEec
Confidence            35678889999999999999 9999998765

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.21  E-value=1.3e-10  Score=101.45  Aligned_cols=155  Identities=14%  Similarity=0.197  Sum_probs=92.9

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCc-ccccceeeecCCccc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLP-QQREYYSAGVPGSFH  106 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~-~~~~~f~~~vpgSFy  106 (332)
                      .+..+|+|+|||+|..|+.+...            +     .  +|.-.|+-. +.-...+... ....--+.-+-+++.
T Consensus        14 ~~~~rVLDiGcG~G~~~~~l~~~------------~-----~--~v~gvD~s~-~~i~~A~~~~~~~~~~~i~~~~~d~~   73 (231)
T d1vl5a_          14 KGNEEVLDVATGGGHVANAFAPF------------V-----K--KVVAFDLTE-DILKVARAFIEGNGHQQVEYVQGDAE   73 (231)
T ss_dssp             CSCCEEEEETCTTCHHHHHHGGG------------S-----S--EEEEEESCH-HHHHHHHHHHHHTTCCSEEEEECCC-
T ss_pred             CCcCEEEEecccCcHHHHHHHHh------------C-----C--EEEEEECCH-HHHhhhhhcccccccccccccccccc
Confidence            55689999999999988765321            1     1  233333321 2222222211 000011223456777


Q ss_pred             cCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEE
Q 044174          107 HRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMV  186 (332)
Q Consensus       107 ~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mv  186 (332)
                      +-.||++++|+|+|..++||+..                                      ...+|+.=++-|+|||+++
T Consensus        74 ~l~~~~~~fD~v~~~~~l~~~~d--------------------------------------~~~~l~~~~r~LkpgG~l~  115 (231)
T d1vl5a_          74 QMPFTDERFHIVTCRIAAHHFPN--------------------------------------PASFVSEAYRVLKKGGQLL  115 (231)
T ss_dssp             CCCSCTTCEEEEEEESCGGGCSC--------------------------------------HHHHHHHHHHHEEEEEEEE
T ss_pred             cccccccccccccccccccccCC--------------------------------------HHHHHHHHHHhcCCCcEEE
Confidence            77799999999999999999744                                      2235666678889999999


Q ss_pred             EEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEeC
Q 044174          187 IIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELTN  262 (332)
Q Consensus       187 l~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~  262 (332)
                      +......+.         ..++.+...+...          .+...  ..+.+.+++.+.+++.| |++++++.+.
T Consensus       116 i~~~~~~~~---------~~~~~~~~~~~~~----------~~~~~--~~~~~~~~~~~~l~~aG-f~~~~~~~~~  169 (231)
T d1vl5a_         116 LVDNSAPEN---------DAFDVFYNYVEKE----------RDYSH--HRAWKKSDWLKMLEEAG-FELEELHCFH  169 (231)
T ss_dssp             EEEEEBCSS---------HHHHHHHHHHHHH----------HCTTC--CCCCBHHHHHHHHHHHT-CEEEEEEEEE
T ss_pred             EEeCCCCCC---------HHHHHHHHHHHhh----------cccCc--ccCCCHHHHHHHHHHCC-CEEEEEEEee
Confidence            976554321         1233333222211          11111  23446899999999999 9998888664

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.14  E-value=2e-09  Score=98.41  Aligned_cols=119  Identities=14%  Similarity=0.065  Sum_probs=74.5

Q ss_pred             CCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEec
Q 044174          111 PQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIMP  190 (332)
Q Consensus       111 P~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~~~  190 (332)
                      +++++|.++|..+++.+..                                    +++..||+.-++-|||||+|++...
T Consensus       114 ~~~~fD~i~si~~~eh~~~------------------------------------~~~~~~f~~i~~~LkpgG~~~i~~i  157 (280)
T d2fk8a1         114 FAEPVDRIVSIEAFEHFGH------------------------------------ENYDDFFKRCFNIMPADGRMTVQSS  157 (280)
T ss_dssp             CCCCCSEEEEESCGGGTCG------------------------------------GGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             hccchhhhhHhhHHHHhhh------------------------------------hhHHHHHHHHHhccCCCceEEEEEe
Confidence            3568999999888877533                                    3566788888999999999999876


Q ss_pred             ccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCc-ccCCHHHHHHHHHhCCceEEeEEEEeCCCCCCCC
Q 044174          191 GIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPI-YSASSEEMVKLVDKNGHFSIKTVELTNPTSWLEG  269 (332)
Q Consensus       191 gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~-y~ps~~E~~~~ie~~G~F~I~~le~~~p~~~~~~  269 (332)
                      +..+....       ............-..+.|     ..+.+|. +.||.+|+...+++.| |+|..++.+.+      
T Consensus       158 ~~~~~~~~-------~~~~~~~~~~~~~~~dfI-----~kyifPgg~lPS~~~l~~~~e~aG-f~v~~~~~~~~------  218 (280)
T d2fk8a1         158 VSYHPYEM-------AARGKKLSFETARFIKFI-----VTEIFPGGRLPSTEMMVEHGEKAG-FTVPEPLSLRP------  218 (280)
T ss_dssp             ECCCHHHH-------HTTCHHHHHHHHHHHHHH-----HHHTSTTCCCCCHHHHHHHHHHTT-CBCCCCEECHH------
T ss_pred             eccCcchh-------hhcccccccccccccchh-----hhhccCCCcccchHhhhhhHHhhc-cccceeeeccc------
Confidence            54331100       000001111111111222     2345676 6899999999999999 99877765521      


Q ss_pred             CccHHHHHHHHHHHHh
Q 044174          270 PIDIKAWTMHVRAAME  285 (332)
Q Consensus       270 ~~~~~~~a~~iRa~~e  285 (332)
                       -+++++..|.+.|..
T Consensus       219 -hYa~TL~~W~~~f~~  233 (280)
T d2fk8a1         219 -HYIKTLRIWGDTLQS  233 (280)
T ss_dssp             -HHHHHHHHHHHHHHH
T ss_pred             -CHHHHHHHHHHHHHH
Confidence             255666666555544

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.12  E-value=6.4e-10  Score=97.42  Aligned_cols=164  Identities=16%  Similarity=0.196  Sum_probs=95.9

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcC-ccc-ccceeeecCCcc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSL-PQQ-REYYSAGVPGSF  105 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l-~~~-~~~f~~~vpgSF  105 (332)
                      +..-+|+|+|||+|..|+.++..        .       ..|..+|+--|+-. +.-...+.. ... ....+...-+.+
T Consensus        38 ~~~~~vLDlGCGtG~~~~~l~~~--------~-------~~~~~~v~giD~S~-~ml~~A~~~~~~~~~~~~~~~~~~d~  101 (225)
T d1im8a_          38 TADSNVYDLGCSRGAATLSARRN--------I-------NQPNVKIIGIDNSQ-PMVERCRQHIAAYHSEIPVEILCNDI  101 (225)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHT--------C-------CCSSCEEEEECSCH-HHHHHHHHHHHTSCCSSCEEEECSCT
T ss_pred             CCCCEEEEeccchhhHHHHHHHh--------h-------cCCCCceEEeCCCH-HHHHHHHHHhHhhcccchhhhccchh
Confidence            44579999999999999776431        0       13456666666532 233333321 111 122222233344


Q ss_pred             ccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeE
Q 044174          106 HHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMM  185 (332)
Q Consensus       106 y~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~m  185 (332)
                      ..  +|.+..|+++|++++||++.                                    .|...+|+.-++-|+|||.|
T Consensus       102 ~~--~~~~~~d~i~~~~~l~~~~~------------------------------------~d~~~~l~~i~~~LkpgG~l  143 (225)
T d1im8a_         102 RH--VEIKNASMVILNFTLQFLPP------------------------------------EDRIALLTKIYEGLNPNGVL  143 (225)
T ss_dssp             TT--CCCCSEEEEEEESCGGGSCG------------------------------------GGHHHHHHHHHHHEEEEEEE
T ss_pred             hc--cccccceeeEEeeeccccCh------------------------------------hhHHHHHHHHHHhCCCCcee
Confidence            32  46678899999999999753                                    24556788888999999999


Q ss_pred             EEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhc----ccCcCcccCCHHHHHHHHHhCCceE
Q 044174          186 VIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELD----SFNLPIYSASSEEMVKLVDKNGHFS  254 (332)
Q Consensus       186 vl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d----~fn~P~y~ps~~E~~~~ie~~G~F~  254 (332)
                      ++.-....+..        ..-+.+...+..+....-.++.+..    .+..-.+..|.+|+...+++.| |+
T Consensus       144 i~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~L~~aG-F~  207 (225)
T d1im8a_         144 VLSEKFRFEDT--------KINHLLIDLHHQFKRANGYSELEVSQKRTALENVMRTDSIETHKVRLKNVG-FS  207 (225)
T ss_dssp             EEEEECCCSSH--------HHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCCCHHHHHHHHHHHT-CS
T ss_pred             ecccccccccc--------hhhhHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccCCCCHHHHHHHHHHcC-CC
Confidence            99755544321        1112333334443332222222221    1112234568999999999999 86

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.08  E-value=9.8e-09  Score=92.76  Aligned_cols=151  Identities=15%  Similarity=0.067  Sum_probs=90.1

Q ss_pred             CCCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccc--cceeeecCCc
Q 044174           27 ASNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQR--EYYSAGVPGS  104 (332)
Q Consensus        27 ~~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~--~~f~~~vpgS  104 (332)
                      .++..+|+|+|||+|..++.+++..                  ...|.--|+-. ......+......  .--+.-+-++
T Consensus        65 l~~~~~vLDiGcG~G~~~~~la~~~------------------~~~v~gvD~s~-~~i~~a~~~~~~~gl~~~v~~~~~d  125 (282)
T d2o57a1          65 LQRQAKGLDLGAGYGGAARFLVRKF------------------GVSIDCLNIAP-VQNKRNEEYNNQAGLADNITVKYGS  125 (282)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHH------------------CCEEEEEESCH-HHHHHHHHHHHHHTCTTTEEEEECC
T ss_pred             CCCCCEEEEeCCCCcHHHhhhhccC------------------CcEEEEEeccc-hhhhhhhcccccccccccccccccc
Confidence            3556899999999998887764321                  01222233211 1222222221110  1123445677


Q ss_pred             cccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCe
Q 044174          105 FHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGM  184 (332)
Q Consensus       105 Fy~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~  184 (332)
                      +.+-.||++++|+|+|..++||+..                                      ...+|+.-++-|+|||+
T Consensus       126 ~~~l~~~~~sfD~V~~~~~l~h~~d--------------------------------------~~~~l~~~~~~LkpgG~  167 (282)
T d2o57a1         126 FLEIPCEDNSYDFIWSQDAFLHSPD--------------------------------------KLKVFQECARVLKPRGV  167 (282)
T ss_dssp             TTSCSSCTTCEEEEEEESCGGGCSC--------------------------------------HHHHHHHHHHHEEEEEE
T ss_pred             cccccccccccchhhccchhhhccC--------------------------------------HHHHHHHHHHhcCCCcE
Confidence            8888899999999999999998632                                      12356667788999999


Q ss_pred             EEEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEE
Q 044174          185 MVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVE  259 (332)
Q Consensus       185 mvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le  259 (332)
                      |++.-........     ..    .+...+..              ...| ..+|.+++++++++.| |+....+
T Consensus       168 l~~~~~~~~~~~~-----~~----~~~~~~~~--------------~~~~-~~~s~~~~~~~l~~~G-f~~i~~~  217 (282)
T d2o57a1         168 MAITDPMKEDGID-----KS----SIQPILDR--------------IKLH-DMGSLGLYRSLAKECG-LVTLRTF  217 (282)
T ss_dssp             EEEEEEEECTTCC-----GG----GGHHHHHH--------------HTCS-SCCCHHHHHHHHHHTT-EEEEEEE
T ss_pred             EEEEEeecCCCCc-----hh----HHHHHHHH--------------hccC-CCCCHHHHHHHHHHcC-CceEEEE
Confidence            9998554433211     11    11111111              1123 3568899999999999 8766554

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.06  E-value=7.9e-10  Score=98.99  Aligned_cols=157  Identities=16%  Similarity=0.129  Sum_probs=99.5

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhc-Cccc-ccceeeecCCcc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTS-LPQQ-REYYSAGVPGSF  105 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~-l~~~-~~~f~~~vpgSF  105 (332)
                      .+.-+|+|+|||+|..++.+++        +         .|.+++..-|+|.  --...+. +... ....+..++|+|
T Consensus        79 ~~~~~VLDvGcG~G~~~~~la~--------~---------~p~~~~~~~D~~~--~~~~a~~~~~~~~~~~rv~~~~~D~  139 (253)
T d1tw3a2          79 TNVRHVLDVGGGKGGFAAAIAR--------R---------APHVSATVLEMAG--TVDTARSYLKDEGLSDRVDVVEGDF  139 (253)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHH--------H---------CTTCEEEEEECTT--HHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred             ccCCEEEEeCCCCCHHHHHHHH--------h---------cceeEEEEccCHH--HHHHHHHHHHHhhcccchhhccccc
Confidence            4456999999999999887743        1         3567888889874  2222222 2211 123466688998


Q ss_pred             ccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeE
Q 044174          106 HHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMM  185 (332)
Q Consensus       106 y~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~m  185 (332)
                      +.. .| .++|+++++++||.++.                                    .+...+|+.=++-|+|||++
T Consensus       140 ~~~-~~-~~~D~v~~~~vlh~~~d------------------------------------~~~~~~L~~~~~~LkPGG~l  181 (253)
T d1tw3a2         140 FEP-LP-RKADAIILSFVLLNWPD------------------------------------HDAVRILTRCAEALEPGGRI  181 (253)
T ss_dssp             TSC-CS-SCEEEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHTEEEEEEE
T ss_pred             hhh-cc-cchhheeeccccccCCc------------------------------------hhhHHHHHHHHHhcCCCcEE
Confidence            863 34 46899999999996432                                    12335777778999999999


Q ss_pred             EEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEeC
Q 044174          186 VIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELTN  262 (332)
Q Consensus       186 vl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~  262 (332)
                      ++.-........     .......+.  +.-|+.-|             -..+|.+|+++++++.| |++.++..+.
T Consensus       182 ~i~e~~~~~~~~-----~~~~~~~~d--l~~~~~~~-------------g~~rt~~e~~~ll~~AG-f~~~~v~~~~  237 (253)
T d1tw3a2         182 LIHERDDLHENS-----FNEQFTELD--LRMLVFLG-------------GALRTREKWDGLAASAG-LVVEEVRQLP  237 (253)
T ss_dssp             EEEECCBCGGGC-----CSHHHHHHH--HHHHHHHS-------------CCCCBHHHHHHHHHHTT-EEEEEEEEEE
T ss_pred             EEEeccCCCCCc-----chhHHHHhh--HHHHhhCC-------------CcCCCHHHHHHHHHHCC-CeEEEEEECC
Confidence            987443222111     111111111  11121111             13478999999999999 9999888765

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=4.7e-09  Score=94.60  Aligned_cols=180  Identities=10%  Similarity=0.098  Sum_probs=105.2

Q ss_pred             hhhHHHHHHHHHHhhhhcccCCCCCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchH
Q 044174            5 DAVKEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFN   84 (332)
Q Consensus         5 ~~~~~~l~~ai~~~~~~~~~~~~~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn   84 (332)
                      .....++++.+.+++...  -.....++|+|+|||+|..|..++..+.    ..+       ....+.+.--| |+-.+.
T Consensus        18 ~~~~~~~~~~l~~~l~~l--~~~~~~~~VLDiGcG~G~~~~~ll~~l~----~~~-------~~~~~~~~~vD-~s~~~l   83 (280)
T d1jqea_          18 QCMQEFMDKKLPGIIGRI--GDTKSEIKILSIGGGAGEIDLQILSKVQ----AQY-------PGVCINNEVVE-PSAEQI   83 (280)
T ss_dssp             HHHHHHHHHTHHHHTTTT--TTTCSEEEEEEETCTTSHHHHHHHHHHH----HHS-------TTCEEEEEEEC-CCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh--ccCCCCCeEEEEcCCCCHHHHHHHHHhh----hhc-------cCCceEEEEEe-CcHHHH
Confidence            345667777776665433  1246678999999999998877765443    222       12345566666 444444


Q ss_pred             HHHhcC-cc---cccceeeecCCc------cccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCH
Q 044174           85 TLFTSL-PQ---QREYYSAGVPGS------FHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAE  154 (332)
Q Consensus        85 ~lf~~l-~~---~~~~f~~~vpgS------Fy~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~  154 (332)
                      ..++.. ..   ...+-+......      .....++++++|+|+|+.+|||+...                        
T Consensus        84 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~d~------------------------  139 (280)
T d1jqea_          84 AKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDI------------------------  139 (280)
T ss_dssp             HHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSSCCCEEEEEEESCGGGCSCH------------------------
T ss_pred             HHHHHHHhhccccccccccchhhhhhhhcchhcccCCCCceeEEEEccceecCCCH------------------------
Confidence            444432 11   111111111111      12356789999999999999997541                        


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcC
Q 044174          155 EVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLP  234 (332)
Q Consensus       155 ~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P  234 (332)
                                    ..+|+.-.+-|+|||.|+++.....+           .|   ...+..+... ..     +..  .
T Consensus       140 --------------~~~l~~l~~~LkpgG~l~i~~~~~~~-----------~~---~~l~~~~~~~-~~-----~~~--~  183 (280)
T d1jqea_         140 --------------PATLKFFHSLLGTNAKMLIIVVSGSS-----------GW---DKLWKKYGSR-FP-----QDD--L  183 (280)
T ss_dssp             --------------HHHHHHHHHTEEEEEEEEEEEECTTS-----------HH---HHHHHHHGGG-SC-----CCT--T
T ss_pred             --------------HHHHHHHHhhCCCCCEEEEEEecCcc-----------hH---HHHHHHHHHh-cC-----CCc--c
Confidence                          23566667889999999998764221           11   2223322111 00     111  1


Q ss_pred             cccCCHHHHHHHHHhCCceEEeEEE
Q 044174          235 IYSASSEEMVKLVDKNGHFSIKTVE  259 (332)
Q Consensus       235 ~y~ps~~E~~~~ie~~G~F~I~~le  259 (332)
                      ..+.+.++++.++++.| |..+...
T Consensus       184 ~~~~~~~~~~~~L~~~G-~~~~~~~  207 (280)
T d1jqea_         184 CQYITSDDLTQMLDNLG-LKYECYD  207 (280)
T ss_dssp             SCCCCHHHHHHHHHHHT-CCEEEEE
T ss_pred             cccCCHHHHHHHHHHCC-CceEEEe
Confidence            23456789999999999 7655443

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=6.2e-10  Score=97.42  Aligned_cols=148  Identities=15%  Similarity=0.120  Sum_probs=95.2

Q ss_pred             CCCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCc-ccccceeeecCCcc
Q 044174           27 ASNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLP-QQREYYSAGVPGSF  105 (332)
Q Consensus        27 ~~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~-~~~~~f~~~vpgSF  105 (332)
                      ..+.-+|+|+|||+|..+..+++.            .    .  -+|..-|+-. ..-...+... ....-.+.-+.+++
T Consensus        58 ~~~~~~vLDiGcG~G~~~~~l~~~------------~----~--~~v~~vD~s~-~~l~~ak~~~~~~~~~~~~f~~~d~  118 (222)
T d2ex4a1          58 KTGTSCALDCGAGIGRITKRLLLP------------L----F--REVDMVDITE-DFLVQAKTYLGEEGKRVRNYFCCGL  118 (222)
T ss_dssp             CCCCSEEEEETCTTTHHHHHTTTT------------T----C--SEEEEEESCH-HHHHHHHHHTGGGGGGEEEEEECCG
T ss_pred             CCCCCEEEEeccCCCHhhHHHHHh------------c----C--CEEEEeecCH-HHhhccccccccccccccccccccc
Confidence            355679999999999988765321            0    1  1344444322 2222222221 11112234456788


Q ss_pred             ccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeE
Q 044174          106 HHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMM  185 (332)
Q Consensus       106 y~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~m  185 (332)
                      .+-.++++++|+|+|..++|++..                                    .|+..+|+.-++-|+|||.+
T Consensus       119 ~~~~~~~~~fD~I~~~~~l~h~~~------------------------------------~~~~~~l~~i~~~Lk~~G~~  162 (222)
T d2ex4a1         119 QDFTPEPDSYDVIWIQWVIGHLTD------------------------------------QHLAEFLRRCKGSLRPNGII  162 (222)
T ss_dssp             GGCCCCSSCEEEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHHEEEEEEE
T ss_pred             cccccccccccccccccccccchh------------------------------------hhhhhHHHHHHHhcCCcceE
Confidence            888889999999999999999653                                    13445677777889999999


Q ss_pred             EEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEe
Q 044174          186 VIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELT  261 (332)
Q Consensus       186 vl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~  261 (332)
                      ++......+...                              .+ ..-..+.++.++++++++++| |++.+.+..
T Consensus       163 ~i~~~~~~~~~~------------------------------~~-~~~~~~~~~~~~~~~l~~~aG-f~ii~~~~q  206 (222)
T d2ex4a1         163 VIKDNMAQEGVI------------------------------LD-DVDSSVCRDLDVVRRIICSAG-LSLLAEERQ  206 (222)
T ss_dssp             EEEEEEBSSSEE------------------------------EE-TTTTEEEEBHHHHHHHHHHTT-CCEEEEEEC
T ss_pred             EEEEcccccccc------------------------------cc-cCCceeeCCHHHHHHHHHHcC-CEEEEEEEe
Confidence            998543322110                              01 112456789999999999999 998777754

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.04  E-value=9.8e-10  Score=96.65  Aligned_cols=155  Identities=19%  Similarity=0.240  Sum_probs=89.1

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccc-eeeecCCccc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREY-YSAGVPGSFH  106 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~-f~~~vpgSFy  106 (332)
                      ....+|+|+|||+|..|..+.+..                   -.|.--|+-. +.-...+.......+ -+.-+-++..
T Consensus        15 ~~~~rILDiGcGtG~~~~~la~~~-------------------~~v~gvD~S~-~~l~~A~~~~~~~~~~~~~~~~~d~~   74 (234)
T d1xxla_          15 RAEHRVLDIGAGAGHTALAFSPYV-------------------QECIGVDATK-EMVEVASSFAQEKGVENVRFQQGTAE   74 (234)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGGS-------------------SEEEEEESCH-HHHHHHHHHHHHHTCCSEEEEECBTT
T ss_pred             CCCCEEEEeCCcCcHHHHHHHHhC-------------------CeEEEEeCCh-hhhhhhhhhhcccccccccccccccc
Confidence            345799999999999998775321                   0111111111 111111111110000 0223444555


Q ss_pred             cCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEE
Q 044174          107 HRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMV  186 (332)
Q Consensus       107 ~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mv  186 (332)
                      +-.||++++|+++|+.++||+...                                      ..+|+.-.+-|+|||+++
T Consensus        75 ~~~~~~~~fD~v~~~~~l~~~~d~--------------------------------------~~~l~~~~r~LkpgG~~~  116 (234)
T d1xxla_          75 SLPFPDDSFDIITCRYAAHHFSDV--------------------------------------RKAVREVARVLKQDGRFL  116 (234)
T ss_dssp             BCCSCTTCEEEEEEESCGGGCSCH--------------------------------------HHHHHHHHHHEEEEEEEE
T ss_pred             cccccccccceeeeeceeecccCH--------------------------------------HHHHHHHHHeeCCCcEEE
Confidence            666899999999999999996541                                      235666677889999999


Q ss_pred             EEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEeC
Q 044174          187 IIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELTN  262 (332)
Q Consensus       187 l~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~  262 (332)
                      +...+..+..         ..+.+.+.+...          .+..  .....+.+++..++++.| |.++.++.+.
T Consensus       117 ~~~~~~~~~~---------~~~~~~~~~~~~----------~~~~--~~~~~~~~~~~~~~~~~g-f~~~~~~~~~  170 (234)
T d1xxla_         117 LVDHYAPEDP---------VLDEFVNHLNRL----------RDPS--HVRESSLSEWQAMFSANQ-LAYQDIQKWN  170 (234)
T ss_dssp             EEEECBCSSH---------HHHHHHHHHHHH----------HCTT--CCCCCBHHHHHHHHHHTT-EEEEEEEEEE
T ss_pred             EEEcCCCCCH---------HHHHHHHHHHhh----------CCCc--ccccCCHHHHHHHHHHCC-CceeEEEEee
Confidence            9765544211         111111222111          0111  112237899999999999 9999988765

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=98.99  E-value=6.2e-09  Score=92.08  Aligned_cols=151  Identities=15%  Similarity=0.056  Sum_probs=89.9

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccc--cceeeecCCcc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQR--EYYSAGVPGSF  105 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~--~~f~~~vpgSF  105 (332)
                      ...-+|+|+|||+|..+..+.+.        +          ...|.--|+- =.+..+.+......  +--+.-+-|++
T Consensus        32 ~pg~~VLDiGCG~G~~~~~la~~--------~----------~~~v~GvD~s-~~~~~~ar~~~~~~gl~~~v~~~~~d~   92 (245)
T d1nkva_          32 KPGTRILDLGSGSGEMLCTWARD--------H----------GITGTGIDMS-SLFTAQAKRRAEELGVSERVHFIHNDA   92 (245)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHH--------T----------CCEEEEEESC-HHHHHHHHHHHHHTTCTTTEEEEESCC
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHh--------c----------CCEEEEEecc-cchhhHHHHHHHHhhccccchhhhhHH
Confidence            33579999999999887765331        1          1233333331 12222333221100  11122344666


Q ss_pred             ccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeE
Q 044174          106 HHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMM  185 (332)
Q Consensus       106 y~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~m  185 (332)
                      .+ ++|++++|+++|..++||+...+                                      .+|+.-.+-|||||++
T Consensus        93 ~~-~~~~~~fD~v~~~~~~~~~~d~~--------------------------------------~~l~~~~r~LkPGG~l  133 (245)
T d1nkva_          93 AG-YVANEKCDVAACVGATWIAGGFA--------------------------------------GAEELLAQSLKPGGIM  133 (245)
T ss_dssp             TT-CCCSSCEEEEEEESCGGGTSSSH--------------------------------------HHHHHHTTSEEEEEEE
T ss_pred             hh-ccccCceeEEEEEehhhccCCHH--------------------------------------HHHHHHHHHcCcCcEE
Confidence            65 47899999999999999976422                                      3566677899999999


Q ss_pred             EEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEe
Q 044174          186 VIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELT  261 (332)
Q Consensus       186 vl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~  261 (332)
                      ++...+.......         +.+...+.               ...+.-+.+..++...+++.| |++...+..
T Consensus       134 ~i~~~~~~~~~~~---------~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~aG-~~~v~~~~~  184 (245)
T d1nkva_         134 LIGEPYWRQLPAT---------EEIAQACG---------------VSSTSDFLTLPGLVGAFDDLG-YDVVEMVLA  184 (245)
T ss_dssp             EEEEEEETTCCSS---------HHHHHTTT---------------CSCGGGSCCHHHHHHHHHTTT-BCCCEEEEC
T ss_pred             EEEeccccCCCCh---------HHHHHHhc---------------cCCCcccCCHHHHHHHHHHcC-CEEEEEEeC
Confidence            9987765442210         11111111               111223568899999999999 887665544

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=1.6e-09  Score=97.59  Aligned_cols=96  Identities=13%  Similarity=0.121  Sum_probs=73.0

Q ss_pred             CCccccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 044174          102 PGSFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVS  181 (332)
Q Consensus       102 pgSFy~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~p  181 (332)
                      ++.+...-++.+++|+|.|.++|||++..+                                  .++..+|+.-++-|||
T Consensus       145 ~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~----------------------------------~~~~~~l~~~~~~LkP  190 (263)
T d2g72a1         145 PQPLGAGSPAPLPADALVSAFCLEAVSPDL----------------------------------ASFQRALDHITTLLRP  190 (263)
T ss_dssp             SSTTCSSCSSCSSEEEEEEESCHHHHCSSH----------------------------------HHHHHHHHHHHTTEEE
T ss_pred             CCccccCCcCcCccCeeeeHHHHHHHccCH----------------------------------HHHHHHHHHHHHHcCC
Confidence            555666667888999999999999987633                                  3567788899999999


Q ss_pred             CCeEEEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEe
Q 044174          182 GGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELT  261 (332)
Q Consensus       182 GG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~  261 (332)
                      ||.||+...-..+..                              .+..-.++.|+.+.+|++++++++| |+|..++..
T Consensus       191 GG~li~~~~~~~~~~------------------------------~~~~~~~~~~~~t~e~v~~~l~~aG-f~v~~~~~~  239 (263)
T d2g72a1         191 GGHLLLIGALEESWY------------------------------LAGEARLTVVPVSEEEVREALVRSG-YKVRDLRTY  239 (263)
T ss_dssp             EEEEEEEEEESCCEE------------------------------EETTEEEECCCCCHHHHHHHHHHTT-EEEEEEEEE
T ss_pred             CCEEEEecccCCccc------------------------------ccCCcccccCCCCHHHHHHHHHHCC-CeEEEEEEe
Confidence            999998865432100                              0111224667889999999999999 999999866


Q ss_pred             C
Q 044174          262 N  262 (332)
Q Consensus       262 ~  262 (332)
                      .
T Consensus       240 ~  240 (263)
T d2g72a1         240 I  240 (263)
T ss_dssp             E
T ss_pred             e
Confidence            4

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.95  E-value=8.5e-10  Score=95.23  Aligned_cols=108  Identities=14%  Similarity=0.197  Sum_probs=73.3

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCcccc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHH  107 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~  107 (332)
                      ++.-+|+|+|||+|..|..+.+        .           -.+|+-.|. +-+.-...+.........+.-+-++.-+
T Consensus        36 ~~~~~ILDiGcG~G~~~~~la~--------~-----------~~~v~giD~-S~~~i~~ak~~~~~~~~~~~~~~~d~~~   95 (226)
T d1ve3a1          36 KKRGKVLDLACGVGGFSFLLED--------Y-----------GFEVVGVDI-SEDMIRKAREYAKSRESNVEFIVGDARK   95 (226)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHH--------T-----------TCEEEEEES-CHHHHHHHHHHHHHTTCCCEEEECCTTS
T ss_pred             CCCCEEEEECCCcchhhhhHhh--------h-----------hcccccccc-cccchhhhhhhhcccccccccccccccc
Confidence            4457999999999998876642        1           124555564 3444444443322211222334456666


Q ss_pred             CCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEE
Q 044174          108 RLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVI  187 (332)
Q Consensus       108 ~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl  187 (332)
                      -.+|++++|+|+|+.++||++.                                    .|+..+|+.-++-|||||++++
T Consensus        96 l~~~~~~fD~I~~~~~l~~~~~------------------------------------~d~~~~l~~i~~~LkpgG~lii  139 (226)
T d1ve3a1          96 LSFEDKTFDYVIFIDSIVHFEP------------------------------------LELNQVFKEVRRVLKPSGKFIM  139 (226)
T ss_dssp             CCSCTTCEEEEEEESCGGGCCH------------------------------------HHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ccccCcCceEEEEecchhhCCh------------------------------------hHHHHHHHHHHHHcCcCcEEEE
Confidence            6789999999999999999632                                    3566778888889999999999


Q ss_pred             Eecc
Q 044174          188 IMPG  191 (332)
Q Consensus       188 ~~~g  191 (332)
                      .+..
T Consensus       140 ~~~~  143 (226)
T d1ve3a1         140 YFTD  143 (226)
T ss_dssp             EEEC
T ss_pred             EEcC
Confidence            8754

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=98.95  E-value=1.4e-09  Score=93.59  Aligned_cols=99  Identities=19%  Similarity=0.268  Sum_probs=66.7

Q ss_pred             cCCccccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 044174          101 VPGSFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIV  180 (332)
Q Consensus       101 vpgSFy~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~  180 (332)
                      +.+.+-+..+|++++|+|+|+.+|||+.. |                                     ..+|+.-++-|+
T Consensus        78 ~~~d~~~l~~~~~~fD~I~~~~~l~h~~d-~-------------------------------------~~~l~~~~~~L~  119 (208)
T d1vlma_          78 LKGTAENLPLKDESFDFALMVTTICFVDD-P-------------------------------------ERALKEAYRILK  119 (208)
T ss_dssp             EECBTTBCCSCTTCEEEEEEESCGGGSSC-H-------------------------------------HHHHHHHHHHEE
T ss_pred             ccccccccccccccccccccccccccccc-c-------------------------------------ccchhhhhhcCC
Confidence            45566666789999999999999999743 1                                     235666677889


Q ss_pred             cCCeEEEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEE
Q 044174          181 SGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVEL  260 (332)
Q Consensus       181 pGG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~  260 (332)
                      |||+|++..+...+              .+.....    ...    ....+..-.+++|.+|+.++++++| |++.++..
T Consensus       120 pgG~l~i~~~~~~~--------------~~~~~~~----~~~----~~~~~~~~~~~~s~~~l~~~l~~~G-f~~i~v~~  176 (208)
T d1vlma_         120 KGGYLIVGIVDRES--------------FLGREYE----KNK----EKSVFYKNARFFSTEELMDLMRKAG-FEEFKVVQ  176 (208)
T ss_dssp             EEEEEEEEEECSSS--------------HHHHHHH----HTT----TC-CCSTTCCCCCHHHHHHHHHHTT-CEEEEEEE
T ss_pred             CCceEEEEecCCcc--------------hhHHhhh----hcc----ccccccccccCCCHHHHHHHHHHcC-CeEEEEEE
Confidence            99999999875432              1111111    111    1112223345789999999999999 98766553

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.93  E-value=3e-07  Score=84.08  Aligned_cols=123  Identities=9%  Similarity=0.011  Sum_probs=77.4

Q ss_pred             cCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEe
Q 044174          110 FPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIM  189 (332)
Q Consensus       110 fP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~~  189 (332)
                      ++++++|.|+|--++.-+......          +                   ..+.|..|++.-++-|||||+|++..
T Consensus       122 ~~~~~fD~i~sie~~eH~~~~~~~----------~-------------------~~~~~~~~f~~i~~~LkpgG~~~l~~  172 (291)
T d1kpia_         122 EFDEPVDRIVSLGAFEHFADGAGD----------A-------------------GFERYDTFFKKFYNLTPDDGRMLLHT  172 (291)
T ss_dssp             GCCCCCSEEEEESCGGGTTCCSSC----------C-------------------STTHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred             ccccccceEeechhHHhcchhhhh----------h-------------------HHHHHHHHHHHHHHhCCCCCceEEEE
Confidence            577899999998888544321111          1                   12567789999999999999999998


Q ss_pred             cccCCCCCCCCcchhHHHHHH----HHHHHHHHHhhccchhhhcccCcCc-ccCCHHHHHHHHHhCCceEEeEEEEeCCC
Q 044174          190 PGIPYGMPYSHLTNGVMYDLM----ATIFMELANEQLITEAELDSFNLPI-YSASSEEMVKLVDKNGHFSIKTVELTNPT  264 (332)
Q Consensus       190 ~gr~~~~~~~~~~~~~~~~~l----~~al~~mv~eGli~~e~~d~fn~P~-y~ps~~E~~~~ie~~G~F~I~~le~~~p~  264 (332)
                      .+..+...        ..+.-    .....   ....|     ..+-+|. +.||.+|+...+++.| |+|+..+.+.+ 
T Consensus       173 i~~~~~~~--------~~~~~~~~p~~~~~---~~~fi-----~kyiFpgg~lps~~~~~~~~e~~g-l~v~~~~~~~~-  234 (291)
T d1kpia_         173 ITIPDKEE--------AQELGLTSPMSLLR---FIKFI-----LTEIFPGGRLPRISQVDYYSSNAG-WKVERYHRIGA-  234 (291)
T ss_dssp             EECCCHHH--------HHHHTCCCCHHHHH---HHHHH-----HHHTCTTCCCCCHHHHHHHHHHHT-CEEEEEEECGG-
T ss_pred             EeccCcch--------hhhccCCCchhhcc---cchHH-----HHHhcCCCCCCCHHHHHhhhcccc-cccceeeeccc-
Confidence            87654210        00000    00000   00111     1233564 7899999999999999 99999886622 


Q ss_pred             CCCCCCccHHHHHHHHHHHHh
Q 044174          265 SWLEGPIDIKAWTMHVRAAME  285 (332)
Q Consensus       265 ~~~~~~~~~~~~a~~iRa~~e  285 (332)
                            .+++++..|.+.+..
T Consensus       235 ------hYa~TL~~W~~~f~~  249 (291)
T d1kpia_         235 ------NYVPTLNAWADALQA  249 (291)
T ss_dssp             ------GHHHHHHHHHHHHHH
T ss_pred             ------cHHHHHHHHHHHHHH
Confidence                  245666666555444

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=98.93  E-value=7.6e-09  Score=92.85  Aligned_cols=147  Identities=11%  Similarity=0.117  Sum_probs=91.9

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCcccc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHH  107 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~  107 (332)
                      .+.-+|+|+|||+|..|..++...       +.           .|..-|. +-.|-...+......+. +..+.+++.+
T Consensus        92 ~~~~~vLD~GcG~G~~t~~ll~~~-------~~-----------~v~~vD~-s~~~l~~a~~~~~~~~~-~~~~~~d~~~  151 (254)
T d1xtpa_          92 HGTSRALDCGAGIGRITKNLLTKL-------YA-----------TTDLLEP-VKHMLEEAKRELAGMPV-GKFILASMET  151 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHH-------CS-----------EEEEEES-CHHHHHHHHHHTTTSSE-EEEEESCGGG
T ss_pred             CCCCeEEEecccCChhhHHHHhhc-------Cc-----------eEEEEcC-CHHHHHhhhcccccccc-ceeEEccccc
Confidence            456799999999999998765321       10           1222222 12333333322111111 1223455666


Q ss_pred             CCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEE
Q 044174          108 RLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVI  187 (332)
Q Consensus       108 ~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl  187 (332)
                      --++++++|+|+|..++||++.                                    .|+..||+.=++-|+|||++++
T Consensus       152 ~~~~~~~fD~I~~~~vl~hl~d------------------------------------~d~~~~l~~~~~~LkpgG~iii  195 (254)
T d1xtpa_         152 ATLPPNTYDLIVIQWTAIYLTD------------------------------------ADFVKFFKHCQQALTPNGYIFF  195 (254)
T ss_dssp             CCCCSSCEEEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cccCCCccceEEeeccccccch------------------------------------hhhHHHHHHHHHhcCCCcEEEE
Confidence            6678899999999999999743                                    2455678888889999999998


Q ss_pred             EecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEe
Q 044174          188 IMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELT  261 (332)
Q Consensus       188 ~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~  261 (332)
                      ..........                             ..+. .-+.+++|.++++++++++| |+|.+.+.-
T Consensus       196 ~e~~~~~~~~-----------------------------~~d~-~d~~~~rs~~~~~~l~~~aG-f~ii~~~~q  238 (254)
T d1xtpa_         196 KENCSTGDRF-----------------------------LVDK-EDSSLTRSDIHYKRLFNESG-VRVVKEAFQ  238 (254)
T ss_dssp             EEEBC--CCE-----------------------------EEET-TTTEEEBCHHHHHHHHHHHT-CCEEEEEEC
T ss_pred             EecCCCCCcc-----------------------------eecc-cCCceeCCHHHHHHHHHHcC-CEEEEEEee
Confidence            7543221110                             0111 12446789999999999999 988776643

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=98.91  E-value=5.2e-09  Score=94.07  Aligned_cols=159  Identities=13%  Similarity=0.162  Sum_probs=98.5

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcC-cc-cccceeeecCCcc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSL-PQ-QREYYSAGVPGSF  105 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l-~~-~~~~f~~~vpgSF  105 (332)
                      ++.-+|+|+|||+|..+..+++        +         .|.+++..-|+|.  --...+.. .. ...-.+.-++|+|
T Consensus        80 ~~~~~vlDvG~G~G~~~~~l~~--------~---------~P~~~~~~~Dlp~--~~~~a~~~~~~~~~~~ri~~~~~d~  140 (256)
T d1qzza2          80 SAVRHVLDVGGGNGGMLAAIAL--------R---------APHLRGTLVELAG--PAERARRRFADAGLADRVTVAEGDF  140 (256)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHH--------H---------CTTCEEEEEECHH--HHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred             ccCCEEEEECCCCCHHHHHHHH--------h---------hcCcEEEEecChH--HHHHHHHHHhhcCCcceeeeeeeec
Confidence            3345899999999988877643        2         3577888889984  23333321 11 1123466688999


Q ss_pred             ccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeE
Q 044174          106 HHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMM  185 (332)
Q Consensus       106 y~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~m  185 (332)
                      +.. .|. +.|++++.+.||=++.                                    .+...+|+.-++-|+|||++
T Consensus       141 ~~~-~p~-~~D~v~~~~vLh~~~d------------------------------------~~~~~lL~~i~~~LkpgG~l  182 (256)
T d1qzza2         141 FKP-LPV-TADVVLLSFVLLNWSD------------------------------------EDALTILRGCVRALEPGGRL  182 (256)
T ss_dssp             TSC-CSC-CEEEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHHEEEEEEE
T ss_pred             ccc-ccc-cchhhhccccccccCc------------------------------------HHHHHHHHHHHhhcCCccee
Confidence            874 464 5899999999983221                                    23445788888999999999


Q ss_pred             EEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEEEeCC
Q 044174          186 VIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVELTNP  263 (332)
Q Consensus       186 vl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le~~~p  263 (332)
                      ++.-.-..+.+.     ....+..+-. +.-|+.             .+-..+|.+|+++++++.| |++.+...+.+
T Consensus       183 lI~d~~~~~~~~-----~~~~~~~~~d-~~ml~~-------------~~g~~rt~~e~~~ll~~AG-f~~~~~~~~~~  240 (256)
T d1qzza2         183 LVLDRADVEGDG-----ADRFFSTLLD-LRMLTF-------------MGGRVRTRDEVVDLAGSAG-LALASERTSGS  240 (256)
T ss_dssp             EEEECCH------------HHHHHHHH-HHHHHH-------------HSCCCCCHHHHHHHHHTTT-EEEEEEEEECC
T ss_pred             EEEEeccCCCCc-----ccHHHHHHHH-HHHHhh-------------CCCccCCHHHHHHHHHHCC-CceeEEEEeCC
Confidence            987432222111     1111111111 111111             1224479999999999999 99988887653

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.89  E-value=6.8e-08  Score=88.29  Aligned_cols=168  Identities=13%  Similarity=0.118  Sum_probs=97.9

Q ss_pred             CCCceEEEeecCCCCcchHHHHHHH-------------HHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCccc
Q 044174           27 ASNIIRLADLGCAVGSNTINAMQDV-------------LEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQ   93 (332)
Q Consensus        27 ~~~~~~iaD~GCs~G~ns~~~~~~i-------------i~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~   93 (332)
                      ..+--+|+|+|||.|..++.++..-             ++..+++..+.+   ....+.+..-|.               
T Consensus        60 l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g---~~~~v~~~~~d~---------------  121 (285)
T d1kpga_          60 LQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSE---NLRSKRVLLAGW---------------  121 (285)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCC---CCSCEEEEESCG---------------
T ss_pred             CCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhh---hhhhhHHHHhhh---------------
Confidence            3556899999999999998877432             222333322222   123344444432               


Q ss_pred             ccceeeecCCccccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHH
Q 044174           94 REYYSAGVPGSFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLN  173 (332)
Q Consensus        94 ~~~f~~~vpgSFy~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~  173 (332)
                                  -   ..++++|-++|-.++..+..                                    +++..|++
T Consensus       122 ------------~---~~~~~fD~i~si~~~eh~~~------------------------------------~~~~~~~~  150 (285)
T d1kpga_         122 ------------E---QFDEPVDRIVSIGAFEHFGH------------------------------------ERYDAFFS  150 (285)
T ss_dssp             ------------G---GCCCCCSEEEEESCGGGTCT------------------------------------TTHHHHHH
T ss_pred             ------------h---cccccccceeeehhhhhcCc------------------------------------hhHHHHHH
Confidence                        1   12357899999887776432                                    23556889


Q ss_pred             HHHHhhccCCeEEEEecccCCCCC-CCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCc-ccCCHHHHHHHHHhCC
Q 044174          174 ARAEEIVSGGMMVIIMPGIPYGMP-YSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPI-YSASSEEMVKLVDKNG  251 (332)
Q Consensus       174 ~Ra~EL~pGG~mvl~~~gr~~~~~-~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~-y~ps~~E~~~~ie~~G  251 (332)
                      ..++-|+|||+|++...+...... ... ....- ........ ..          ..+-+|- ..||.+++...+++.|
T Consensus       151 ~~~r~LkpgG~~~l~~i~~~~~~~~~~~-~~~~~-~~~~~~~~-fi----------~kyiFpgg~lPsl~~~~~~~e~ag  217 (285)
T d1kpga_         151 LAHRLLPADGVMLLHTITGLHPKEIHER-GLPMS-FTFARFLK-FI----------VTEIFPGGRLPSIPMVQECASANG  217 (285)
T ss_dssp             HHHHHSCTTCEEEEEEEEECCHHHHTTT-TCSCH-HHHHHHHH-HH----------HHHTSTTCCCCCHHHHHHHHHTTT
T ss_pred             HHHhhcCCCCcEEEEEEeccCchhhccc-cCCcc-hhhhchhh-HH----------HHHhccCCCCCChhhHHHHHHHhc
Confidence            999999999999998776432110 000 00000 01111111 11          1122333 5689999999999999


Q ss_pred             ceEEeEEEEeCCCCCCCCCccHHHHHHHHHHHH
Q 044174          252 HFSIKTVELTNPTSWLEGPIDIKAWTMHVRAAM  284 (332)
Q Consensus       252 ~F~I~~le~~~p~~~~~~~~~~~~~a~~iRa~~  284 (332)
                       |+|+..+.+.       ..+++++..|.+.+-
T Consensus       218 -f~v~~~~~~~-------~hYarTl~~W~~~f~  242 (285)
T d1kpga_         218 -FTVTRVQSLQ-------PHYAKTLDLWSAALQ  242 (285)
T ss_dssp             -CEEEEEEECH-------HHHHHHHHHHHHHHH
T ss_pred             -hhhcccccch-------hhHHHHHHHHHHHHH
Confidence             9998887652       124466666655544

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=98.87  E-value=1.1e-08  Score=85.71  Aligned_cols=156  Identities=9%  Similarity=-0.047  Sum_probs=93.8

Q ss_pred             HHHHHHHHHhhhhcccCCCCCceEEEeecCCCCcchHHHHH------------HHHHHHHHhhhhcCCCCCCCceEEEec
Q 044174            9 EKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQ------------DVLEVIKNKCHSQCPSSKLPEFQVFFN   76 (332)
Q Consensus         9 ~~l~~ai~~~~~~~~~~~~~~~~~iaD~GCs~G~ns~~~~~------------~ii~~i~~~~~~~~~~~~~~~~~v~~n   76 (332)
                      |-|.+.+.++.       .++.-+|+|+|||+|.+++.+++            ..|+..+++.++..      ... -.-
T Consensus         7 ~~~~~~~~~l~-------~~~~~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~------~~~-~~~   72 (201)
T d1pjza_           7 KDLQQYWSSLN-------VVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQP------HIT-SQG   72 (201)
T ss_dssp             HHHHHHHHHHC-------CCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCS------EEE-EET
T ss_pred             HHHHHHHHHcC-------CCCCCEEEEecCcCCHHHHHHHHcCCceEeecccHHHHHHHHHHhcccc------chh-hhh
Confidence            44555555432       35567999999999999999873            34444444432210      000 000


Q ss_pred             CCCCCchHHHHhcCcccccceeeecCCccccC-CcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHH
Q 044174           77 DKTSNDFNTLFTSLPQQREYYSAGVPGSFHHR-LFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEE  155 (332)
Q Consensus        77 Dlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~~-lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~  155 (332)
                      |+.            ........-+-|++... ..+..++|+++|+.++|+++.                          
T Consensus        73 ~~~------------~~~~~~~~~~~~d~~~l~~~~~~~~D~i~~~~~l~~l~~--------------------------  114 (201)
T d1pjza_          73 DFK------------VYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPA--------------------------  114 (201)
T ss_dssp             TEE------------EEECSSSEEEEECCSSSTHHHHHSEEEEEEESCGGGSCH--------------------------
T ss_pred             hhh------------hccccccceecccccccccccccceeEEEEEeeeEecch--------------------------
Confidence            000            00001111122233321 234578999999999999654                          


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCc
Q 044174          156 VVNAYASQFAKDMENFLNARAEEIVSGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPI  235 (332)
Q Consensus       156 v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~  235 (332)
                                .++..+++.-++-|||||++++.........                                  ..-|.
T Consensus       115 ----------~~~~~~~~~i~~~LkpgG~l~l~~~~~~~~~----------------------------------~~~p~  150 (201)
T d1pjza_         115 ----------DMRERYVQHLEALMPQACSGLLITLEYDQAL----------------------------------LEGPP  150 (201)
T ss_dssp             ----------HHHHHHHHHHHHHSCSEEEEEEEEESSCSSS----------------------------------SSSCC
T ss_pred             ----------hhhHHHHHHHHHhcCCCcEEEEEEccccccc----------------------------------CCCcc
Confidence                      2455677778889999999988876543211                                  12366


Q ss_pred             ccCCHHHHHHHHHhCCceEEeEEEEeC
Q 044174          236 YSASSEEMVKLVDKNGHFSIKTVELTN  262 (332)
Q Consensus       236 y~ps~~E~~~~ie~~G~F~I~~le~~~  262 (332)
                      |..+.+|+++++. .+ |.|+.++..+
T Consensus       151 ~~~~~~el~~l~~-~~-~~i~~~~~~~  175 (201)
T d1pjza_         151 FSVPQTWLHRVMS-GN-WEVTKVGGQD  175 (201)
T ss_dssp             CCCCHHHHHHTSC-SS-EEEEEEEESS
T ss_pred             ccCCHHHHHHHhC-CC-cEEEEEEEec
Confidence            7788999998874 56 8888888664

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=3.9e-08  Score=86.22  Aligned_cols=164  Identities=8%  Similarity=-0.057  Sum_probs=98.5

Q ss_pred             hHHHHHHHHHHhhhhcccCCCCCceEEEeecCCCCcchHHHHH------------HHHHHHHHhhhhcCCCCCCCceEEE
Q 044174            7 VKEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQ------------DVLEVIKNKCHSQCPSSKLPEFQVF   74 (332)
Q Consensus         7 ~~~~l~~ai~~~~~~~~~~~~~~~~~iaD~GCs~G~ns~~~~~------------~ii~~i~~~~~~~~~~~~~~~~~v~   74 (332)
                      .-|.|.+-+.+.+.      .+..-+|+|+|||.|.+++.+++            ..|+..++....       ......
T Consensus        29 ~~~~l~~~~~~~l~------~~~~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~-------~~~~~~   95 (229)
T d2bzga1          29 GHQLLKKHLDTFLK------GKSGLRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQEFFTEQNL-------SYSEEP   95 (229)
T ss_dssp             CCHHHHHHHHHHHT------TCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTC-------CEEEEE
T ss_pred             CCHHHHHHHHHhcC------CCCCCEEEEeCCCCcHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhc-------cccccc
Confidence            34566666655543      24457999999999999999873            233333332211       001111


Q ss_pred             ecCCCCCchHHHHhcCcccccceeeecCCccccC-CcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCC
Q 044174           75 FNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHR-LFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAA  153 (332)
Q Consensus        75 ~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~~-lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~  153 (332)
                      +...+.+++..       ....-+..+-++++.. ..+.+++|++++..++|.+..  .                     
T Consensus        96 ~~~~~~~~~~~-------~~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~--~---------------------  145 (229)
T d2bzga1          96 ITEIPGTKVFK-------SSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINP--G---------------------  145 (229)
T ss_dssp             CTTSTTCEEEE-------ETTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCG--G---------------------
T ss_pred             hhcccccceee-------ecCCcEEEEEcchhhccccccCceeEEEEEEEEEeccc--h---------------------
Confidence            11111111110       0011122233344432 467889999999999999643  1                     


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCc
Q 044174          154 EEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNL  233 (332)
Q Consensus       154 ~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~  233 (332)
                                   +...+++.-++-|+|||+++++........                                  ..-
T Consensus       146 -------------~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~----------------------------------~~g  178 (229)
T d2bzga1         146 -------------DRKCYADTMFSLLGKKFQYLLCVLSYDPTK----------------------------------HPG  178 (229)
T ss_dssp             -------------GHHHHHHHHHHTEEEEEEEEEEEEECCTTT----------------------------------CCC
T ss_pred             -------------hhHHHHHHHHhhcCCcceEEEEEcccCCCC----------------------------------CCC
Confidence                         223456666789999999998876643211                                  113


Q ss_pred             CcccCCHHHHHHHHHhCCceEEeEEEEeC
Q 044174          234 PIYSASSEEMVKLVDKNGHFSIKTVELTN  262 (332)
Q Consensus       234 P~y~ps~~E~~~~ie~~G~F~I~~le~~~  262 (332)
                      |.|..|.+|++.++.. + |.|+.+|..+
T Consensus       179 pp~~~~~~el~~lf~~-~-~~i~~le~~~  205 (229)
T d2bzga1         179 PPFYVPHAEIERLFGK-I-CNIRCLEKVD  205 (229)
T ss_dssp             SSCCCCHHHHHHHHTT-T-EEEEEEEEEE
T ss_pred             CCCCCCHHHHHHHhcC-C-CEEEEEEEec
Confidence            6688899999999963 5 9999998765

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=98.77  E-value=2e-07  Score=82.62  Aligned_cols=100  Identities=12%  Similarity=0.216  Sum_probs=65.5

Q ss_pred             CCceEEEeecCCCCcchHHHHH-------------HHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQ-------------DVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQR   94 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~-------------~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~   94 (332)
                      ++.-+|+|+|||+|..+..+..             ..++..++++...+   ..+.+.+...|.                
T Consensus        23 ~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~---~~~~v~f~~~D~----------------   83 (252)
T d1ri5a_          23 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMK---RRFKVFFRAQDS----------------   83 (252)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSC---CSSEEEEEESCT----------------
T ss_pred             CCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcC---CCcceEEEEcch----------------
Confidence            4457899999999998877653             12233333222211   122333333332                


Q ss_pred             cceeeecCCccccC-CcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHH
Q 044174           95 EYYSAGVPGSFHHR-LFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLN  173 (332)
Q Consensus        95 ~~f~~~vpgSFy~~-lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~  173 (332)
                                 ... +.+++++|+|+|..++||+-..                                  .+|+..+|+
T Consensus        84 -----------~~~~~~~~~~fD~V~~~~~l~~~~~~----------------------------------~~~~~~~l~  118 (252)
T d1ri5a_          84 -----------YGRHMDLGKEFDVISSQFSFHYAFST----------------------------------SESLDIAQR  118 (252)
T ss_dssp             -----------TTSCCCCSSCEEEEEEESCGGGGGSS----------------------------------HHHHHHHHH
T ss_pred             -----------hhhcccccccceEEEEcceeeecCCC----------------------------------HHHHHHHHH
Confidence                       222 2357799999999999996442                                  246778899


Q ss_pred             HHHHhhccCCeEEEEecc
Q 044174          174 ARAEEIVSGGMMVIIMPG  191 (332)
Q Consensus       174 ~Ra~EL~pGG~mvl~~~g  191 (332)
                      .-++-|+|||+|+++++.
T Consensus       119 ~i~~~Lk~gG~~i~~~~~  136 (252)
T d1ri5a_         119 NIARHLRPGGYFIMTVPS  136 (252)
T ss_dssp             HHHHTEEEEEEEEEEEEC
T ss_pred             HHhceeCCCCEEEEEecC
Confidence            999999999999998753

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.71  E-value=9.5e-08  Score=85.35  Aligned_cols=149  Identities=18%  Similarity=0.166  Sum_probs=96.3

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCcccc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHH  107 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~  107 (332)
                      ++.-+|+|+|||+|..++.+++        +         .|++++..-|+|.     ....-..  .--+..++|+|++
T Consensus        80 ~~~~~vlDiGGG~G~~~~~l~~--------~---------~P~l~~~v~Dlp~-----vi~~~~~--~~ri~~~~gd~~~  135 (244)
T d1fp1d2          80 EGISTLVDVGGGSGRNLELIIS--------K---------YPLIKGINFDLPQ-----VIENAPP--LSGIEHVGGDMFA  135 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHH--------H---------CTTCEEEEEECHH-----HHTTCCC--CTTEEEEECCTTT
T ss_pred             cCCcEEEEecCCCcHHHHHHHH--------H---------CCCCeEEEecchh-----hhhccCC--CCCeEEecCCccc
Confidence            4457899999999998877643        2         4678889999984     2221111  2346678999997


Q ss_pred             CCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEE
Q 044174          108 RLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVI  187 (332)
Q Consensus       108 ~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl  187 (332)
                      . .|..  |+++.+..||..+.                                    .+-.+.|+.-++.|+|||++++
T Consensus       136 ~-~p~~--D~~~l~~vLh~~~d------------------------------------e~~~~iL~~~~~aL~pgg~llI  176 (244)
T d1fp1d2         136 S-VPQG--DAMILKAVCHNWSD------------------------------------EKCIEFLSNCHKALSPNGKVII  176 (244)
T ss_dssp             C-CCCE--EEEEEESSGGGSCH------------------------------------HHHHHHHHHHHHHEEEEEEEEE
T ss_pred             c-cccc--eEEEEehhhhhCCH------------------------------------HHHHHHHHHHHHHcCCCcEEEE
Confidence            5 5644  99999999996332                                    1233578888899999999988


Q ss_pred             EecccCCCCCCCCcchhHHHHHHHHHHH-H-HHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEE
Q 044174          188 IMPGIPYGMPYSHLTNGVMYDLMATIFM-E-LANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVE  259 (332)
Q Consensus       188 ~~~gr~~~~~~~~~~~~~~~~~l~~al~-~-mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le  259 (332)
                      .-.-.++.... .  .   ...+...+. . |+.             ..--.+|.+|+++++++.| |+..++.
T Consensus       177 ~e~v~~~~~~~-~--~---~~~~~~~~d~~m~~~-------------~~g~ert~~e~~~ll~~AG-F~~v~v~  230 (244)
T d1fp1d2         177 VEFILPEEPNT-S--E---ESKLVSTLDNLMFIT-------------VGGRERTEKQYEKLSKLSG-FSKFQVA  230 (244)
T ss_dssp             EEEEECSSCCS-S--H---HHHHHHHHHHHHHHH-------------HSCCCEEHHHHHHHHHHTT-CSEEEEE
T ss_pred             EEEEecCCCCC-c--h---HHHHHHHHHHHHHhh-------------CCCcCCCHHHHHHHHHHcC-CCceEEE
Confidence            85544332211 0  0   111111111 1 111             1223468999999999999 9876664

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=98.69  E-value=1.1e-07  Score=82.90  Aligned_cols=151  Identities=11%  Similarity=0.116  Sum_probs=84.0

Q ss_pred             eEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCccccCCc
Q 044174           31 IRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHHRLF  110 (332)
Q Consensus        31 ~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~~lf  110 (332)
                      -+|+|+|||+|..+..+.+.            +     .  .|+--|+ +.+.....+......   +.-+-+.+..- .
T Consensus        22 ~~VLDiGcG~G~~~~~l~~~------------g-----~--~v~giD~-s~~~i~~a~~~~~~~---~~~~~~~~~~~-~   77 (225)
T d2p7ia1          22 GNLLELGSFKGDFTSRLQEH------------F-----N--DITCVEA-SEEAISHAQGRLKDG---ITYIHSRFEDA-Q   77 (225)
T ss_dssp             SCEEEESCTTSHHHHHHTTT------------C-----S--CEEEEES-CHHHHHHHHHHSCSC---EEEEESCGGGC-C
T ss_pred             CcEEEEeCCCcHHHHHHHHc------------C-----C--eEEEEeC-cHHHhhhhhcccccc---ccccccccccc-c
Confidence            47999999999998765321            1     1  1333332 223333333322211   11223444443 3


Q ss_pred             CCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHH-HHHhhccCCeEEEEe
Q 044174          111 PQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNA-RAEEIVSGGMMVIIM  189 (332)
Q Consensus       111 P~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~-Ra~EL~pGG~mvl~~  189 (332)
                      +++++|+|+|...|||+....                                      .+|+. +.+-|+|||.+++.+
T Consensus        78 ~~~~fD~I~~~~vleh~~d~~--------------------------------------~~l~~i~~~~Lk~gG~l~i~~  119 (225)
T d2p7ia1          78 LPRRYDNIVLTHVLEHIDDPV--------------------------------------ALLKRINDDWLAEGGRLFLVC  119 (225)
T ss_dssp             CSSCEEEEEEESCGGGCSSHH--------------------------------------HHHHHHHHTTEEEEEEEEEEE
T ss_pred             cccccccccccceeEecCCHH--------------------------------------HHHHHHHHHhcCCCceEEEEe
Confidence            568999999999999975411                                      13333 335689999999998


Q ss_pred             cccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhh-c--ccCcC-cccCCHHHHHHHHHhCCceEEeEEEEe
Q 044174          190 PGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAEL-D--SFNLP-IYSASSEEMVKLVDKNGHFSIKTVELT  261 (332)
Q Consensus       190 ~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~-d--~fn~P-~y~ps~~E~~~~ie~~G~F~I~~le~~  261 (332)
                      +-...           ++..+ ..+.     |.+..... .  ....+ ...-+.++++..+++.| |+|.+.+.+
T Consensus       120 pn~~~-----------~~~~~-~~~~-----~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~G-f~i~~~~~~  177 (225)
T d2p7ia1         120 PNANA-----------VSRQI-AVKM-----GIISHNSAVTEAEFAHGHRCTYALDTLERDASRAG-LQVTYRSGI  177 (225)
T ss_dssp             ECTTC-----------HHHHH-HHHT-----TSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTT-CEEEEEEEE
T ss_pred             CCccc-----------HHHHH-HHHh-----hhhhhhhhcCccccceeeeeccCHHHHHHHHHHCC-CEEEEEEEE
Confidence            64321           11111 1111     22211110 0  00111 12338999999999999 999988843

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=98.61  E-value=1.5e-07  Score=82.79  Aligned_cols=45  Identities=11%  Similarity=0.446  Sum_probs=35.8

Q ss_pred             CCceeEEEec-CccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEec
Q 044174          112 QSSIHFAHCS-YALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIMP  190 (332)
Q Consensus       112 ~~svd~~~S~-~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~~~  190 (332)
                      ++++|+|+|. .++||+..                                   .+|+..+|+.-++-|+|||.|++.+.
T Consensus        99 ~~~fD~i~~~~~~~~~~~~-----------------------------------~~~~~~~l~~~~~~LkpgG~~i~~~~  143 (246)
T d1y8ca_          99 NRKFDLITCCLDSTNYIID-----------------------------------SDDLKKYFKAVSNHLKEGGVFIFDIN  143 (246)
T ss_dssp             SCCEEEEEECTTGGGGCCS-----------------------------------HHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             cccccccceeeeeeeccCC-----------------------------------HHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence            5689999985 57777544                                   24777899999999999999998765


Q ss_pred             c
Q 044174          191 G  191 (332)
Q Consensus       191 g  191 (332)
                      .
T Consensus       144 ~  144 (246)
T d1y8ca_         144 S  144 (246)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.58  E-value=9.3e-08  Score=81.67  Aligned_cols=46  Identities=11%  Similarity=0.194  Sum_probs=37.1

Q ss_pred             cCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEe
Q 044174          110 FPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIM  189 (332)
Q Consensus       110 fP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~~  189 (332)
                      .|++++|+++|+.++|++..                                    .++..+|+.-++-|+|||++++..
T Consensus        91 ~~~~~fD~I~~~~~~~~~~~------------------------------------~~~~~~l~~~~~~L~pgG~~~~~~  134 (198)
T d2i6ga1          91 TFDGEYDFILSTVVMMFLEA------------------------------------QTIPGLIANMQRCTKPGGYNLIVA  134 (198)
T ss_dssp             CCCCCEEEEEEESCGGGSCT------------------------------------THHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cccccccEEEEeeeeecCCH------------------------------------HHHHHHHHHHHHHcCCCcEEEEEE
Confidence            46789999999999999643                                    144568888889999999999976


Q ss_pred             cc
Q 044174          190 PG  191 (332)
Q Consensus       190 ~g  191 (332)
                      ..
T Consensus       135 ~~  136 (198)
T d2i6ga1         135 AM  136 (198)
T ss_dssp             EB
T ss_pred             ec
Confidence            54

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.49  E-value=4.2e-07  Score=79.50  Aligned_cols=107  Identities=16%  Similarity=0.297  Sum_probs=63.0

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCcccc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHH  107 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~  107 (332)
                      .+.-+|+|+|||+|..++.+.+.            +       .+|...|+-. +.-...+......+.-+.-+-|.+.+
T Consensus        40 ~~~~~iLDiGcGtG~~~~~l~~~------------~-------~~v~gvD~s~-~mi~~a~~~~~~~~~~i~~~~~d~~~   99 (251)
T d1wzna1          40 REVRRVLDLACGTGIPTLELAER------------G-------YEVVGLDLHE-EMLRVARRKAKERNLKIEFLQGDVLE   99 (251)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHT------------T-------CEEEEEESCH-HHHHHHHHHHHHTTCCCEEEESCGGG
T ss_pred             CCCCEEEEeCCCCCccchhhccc------------c-------eEEEEEeecc-ccccccccccccccccchheehhhhh
Confidence            44568999999999998877531            0       1222223221 12222221111111112223344444


Q ss_pred             CCcCCCceeEEEec-CccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEE
Q 044174          108 RLFPQSSIHFAHCS-YALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMV  186 (332)
Q Consensus       108 ~lfP~~svd~~~S~-~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mv  186 (332)
                      --+| +++|+|+|. .++||++.                                    .|+..+|+.-++-|+|||+++
T Consensus       100 l~~~-~~fD~I~~~~~~~~~~~~------------------------------------~~~~~~L~~~~~~LkpgG~li  142 (251)
T d1wzna1         100 IAFK-NEFDAVTMFFSTIMYFDE------------------------------------EDLRKLFSKVAEALKPGGVFI  142 (251)
T ss_dssp             CCCC-SCEEEEEECSSGGGGSCH------------------------------------HHHHHHHHHHHHHEEEEEEEE
T ss_pred             cccc-cccchHhhhhhhhhcCCh------------------------------------HHHHHHHHHHHHHcCCCcEEE
Confidence            3344 689999986 57788632                                    256678999999999999999


Q ss_pred             EEecc
Q 044174          187 IIMPG  191 (332)
Q Consensus       187 l~~~g  191 (332)
                      +.+..
T Consensus       143 i~~~~  147 (251)
T d1wzna1         143 TDFPC  147 (251)
T ss_dssp             EEEEC
T ss_pred             EEecc
Confidence            98754

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=98.48  E-value=1.6e-07  Score=81.58  Aligned_cols=100  Identities=14%  Similarity=0.223  Sum_probs=60.7

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCcccc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHH  107 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~  107 (332)
                      ++.-+|+|+|||+|..+..+.+.                   -.+|+-.|.-. +--...+..  ....++   =++..+
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~-------------------~~~v~giD~s~-~~l~~a~~~--~~~~~~---~~~~~~   95 (246)
T d2avna1          41 KNPCRVLDLGGGTGKWSLFLQER-------------------GFEVVLVDPSK-EMLEVAREK--GVKNVV---EAKAED   95 (246)
T ss_dssp             CSCCEEEEETCTTCHHHHHHHTT-------------------TCEEEEEESCH-HHHHHHHHH--TCSCEE---ECCTTS
T ss_pred             CCCCEEEEECCCCchhccccccc-------------------ceEEEEeeccc-ccccccccc--cccccc---cccccc
Confidence            45578999999999999876421                   01233333221 111111111  111222   245566


Q ss_pred             CCcCCCceeEEEec-CccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEE
Q 044174          108 RLFPQSSIHFAHCS-YALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMV  186 (332)
Q Consensus       108 ~lfP~~svd~~~S~-~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mv  186 (332)
                      -.||++++|+|+|. ..+||+...                                      ..+|+.=++-|||||.++
T Consensus        96 l~~~~~~fD~ii~~~~~~~~~~d~--------------------------------------~~~l~~i~r~Lk~gG~~i  137 (246)
T d2avna1          96 LPFPSGAFEAVLALGDVLSYVENK--------------------------------------DKAFSEIRRVLVPDGLLI  137 (246)
T ss_dssp             CCSCTTCEEEEEECSSHHHHCSCH--------------------------------------HHHHHHHHHHEEEEEEEE
T ss_pred             cccccccccceeeecchhhhhhhH--------------------------------------HHHHHHHHhhcCcCcEEE
Confidence            66899999999986 578996431                                      124555557788999999


Q ss_pred             EEec
Q 044174          187 IIMP  190 (332)
Q Consensus       187 l~~~  190 (332)
                      +.+.
T Consensus       138 i~~~  141 (246)
T d2avna1         138 ATVD  141 (246)
T ss_dssp             EEEE
T ss_pred             EEEC
Confidence            9885

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.43  E-value=2.3e-06  Score=76.02  Aligned_cols=150  Identities=19%  Similarity=0.257  Sum_probs=95.1

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCcccc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHH  107 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~  107 (332)
                      .+.-+|+|+|||+|.-++.+++        +         .|++++..-|||.     .....+.  .-.+..++|+|+.
T Consensus        79 ~~~~~vvDvGGG~G~~~~~l~~--------~---------~P~l~~~v~Dlp~-----vi~~~~~--~~rv~~~~gD~f~  134 (244)
T d1fp2a2          79 DGLESIVDVGGGTGTTAKIICE--------T---------FPKLKCIVFDRPQ-----VVENLSG--SNNLTYVGGDMFT  134 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHH--------H---------CTTCEEEEEECHH-----HHTTCCC--BTTEEEEECCTTT
T ss_pred             cCceEEEEecCCccHHHHHHHH--------h---------CCCCeEEEecCHH-----HHHhCcc--cCceEEEecCccc
Confidence            3456899999999998876533        2         4678999999984     2333322  2346779999998


Q ss_pred             CCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccC---Ce
Q 044174          108 RLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSG---GM  184 (332)
Q Consensus       108 ~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pG---G~  184 (332)
                      . .|  ..|+++..+.||..+.                                    ++-..+|+.-++.|+||   |+
T Consensus       135 ~-~p--~aD~~~l~~vLHdw~d------------------------------------~~~~~iL~~~~~al~pgg~~~~  175 (244)
T d1fp2a2         135 S-IP--NADAVLLKYILHNWTD------------------------------------KDCLRILKKCKEAVTNDGKRGK  175 (244)
T ss_dssp             C-CC--CCSEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHHHSGGGCCCE
T ss_pred             C-CC--CCcEEEEEeecccCCh------------------------------------HHHHHHHHHHHHHcCcccCCcE
Confidence            5 35  4599999999995322                                    23446788888999998   66


Q ss_pred             EEEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEE
Q 044174          185 MVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVE  259 (332)
Q Consensus       185 mvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le  259 (332)
                      +++.-.-.++...      ...... ...+.+|.   ..      .++  =-.+|.+|+++++++.| |++.++.
T Consensus       176 lli~e~~~~~~~~------~~~~~~-~~~~~dl~---m~------~~~--G~ert~~e~~~ll~~AG-f~~~~i~  231 (244)
T d1fp2a2         176 VTIIDMVIDKKKD------ENQVTQ-IKLLMDVN---MA------CLN--GKERNEEEWKKLFIEAG-FQHYKIS  231 (244)
T ss_dssp             EEEEECEECTTTS------CHHHHH-HHHHHHHH---GG------GGT--CCCEEHHHHHHHHHHTT-CCEEEEE
T ss_pred             EEEEEeecCCCCC------CchHHH-HHHHHHHH---HH------hCC--CcCCCHHHHHHHHHHcC-CceEEEE
Confidence            6665332222111      111111 12223321   00      011  13579999999999999 9987765

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.41  E-value=2.2e-06  Score=75.97  Aligned_cols=150  Identities=15%  Similarity=0.195  Sum_probs=92.6

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCccc-ccceeeecCCccc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQ-REYYSAGVPGSFH  106 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~-~~~f~~~vpgSFy  106 (332)
                      .+.-+|+|+|||+|..++.+++        +         .|.+++..-|||.-        ++.. ..--+..++|.|+
T Consensus        80 ~~~~~vvDvGGG~G~~~~~l~~--------~---------~P~l~~~v~Dlp~v--------i~~~~~~~r~~~~~~d~~  134 (243)
T d1kyza2          80 EGLKSLVDVGGGTGAVINTIVS--------K---------YPTIKGINFDLPHV--------IEDAPSYPGVEHVGGDMF  134 (243)
T ss_dssp             SSCSEEEEETCTTSHHHHHHHH--------H---------CTTSEEEEEECTTT--------TTTCCCCTTEEEEECCTT
T ss_pred             cCCcEEEEecCCCcHHHHHHHH--------H---------CCCCeEEEcccHHh--------hhhcccCCceEEeccccc
Confidence            3456899999999999987754        2         36788899999973        2221 1234667899998


Q ss_pred             cCCcCCCceeEEEecCccc-cccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeE
Q 044174          107 HRLFPQSSIHFAHCSYALH-WLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMM  185 (332)
Q Consensus       107 ~~lfP~~svd~~~S~~alH-WLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~m  185 (332)
                      .. +|...  +.+-.+.+| |    |                                 ..|...+|+.-++.|+|||++
T Consensus       135 ~~-~P~ad--~~~l~~vlh~~----~---------------------------------d~~~~~iL~~~~~al~pgg~~  174 (243)
T d1kyza2         135 VS-IPKAD--AVFMKWICHDW----S---------------------------------DEHCLKFLKNCYEALPDNGKV  174 (243)
T ss_dssp             TC-CCCCS--CEECSSSSTTS----C---------------------------------HHHHHHHHHHHHHHCCSSSCE
T ss_pred             cc-CCCcc--eEEEEEEeecC----C---------------------------------HHHHHHHHHHHHHhcCCCceE
Confidence            75 57654  344445555 4    1                                 135556888888999999999


Q ss_pred             EEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhhccchhhhcccCcCcccCCHHHHHHHHHhCCceEEeEEE
Q 044174          186 VIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQLITEAELDSFNLPIYSASSEEMVKLVDKNGHFSIKTVE  259 (332)
Q Consensus       186 vl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~y~ps~~E~~~~ie~~G~F~I~~le  259 (332)
                      ++.-.-..+....   ...    ....++.++.--.         .+.--..+|.+|+++++++.| |+..++.
T Consensus       175 li~d~~~~~~~~~---~~~----~~~~~~~d~~ml~---------~~~~g~ert~~e~~~ll~~AG-f~~vkv~  231 (243)
T d1kyza2         175 IVAECILPVAPDS---SLA----TKGVVHIDVIMLA---------HNPGGKERTQKEFEDLAKGAG-FQGFKVH  231 (243)
T ss_dssp             EEEECEECSSCCC---CHH----HHHHHHHHHHHHH---------HCSSCCCEEHHHHHHHHHHHC-CSCEEEE
T ss_pred             EEEEEEecCCCCC---chh----hHHHHHHHHHHHh---------hCCCCCcCCHHHHHHHHHHcC-CCcEEEE
Confidence            8874332221110   011    1111222221100         001123578999999999999 9887765

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=98.38  E-value=4.9e-07  Score=81.65  Aligned_cols=109  Identities=17%  Similarity=0.204  Sum_probs=63.6

Q ss_pred             CCCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCccc
Q 044174           27 ASNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFH  106 (332)
Q Consensus        27 ~~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy  106 (332)
                      ..++.+|+|+|||+|..++.+..        .+        +....|+--|+-. +.-...+......+.-+.-+-+++.
T Consensus        25 ~~~~~~ILDiGcG~G~~~~~la~--------~~--------~~~~~v~giD~s~-~~l~~a~~~~~~~~~~~~f~~~d~~   87 (281)
T d2gh1a1          25 ITKPVHIVDYGCGYGYLGLVLMP--------LL--------PEGSKYTGIDSGE-TLLAEARELFRLLPYDSEFLEGDAT   87 (281)
T ss_dssp             CCSCCEEEEETCTTTHHHHHHTT--------TS--------CTTCEEEEEECCH-HHHHHHHHHHHSSSSEEEEEESCTT
T ss_pred             cCCcCEEEEecCcCCHHHHHHHH--------hC--------CCCCEEEEEecch-hHhhhhhcccccccccccccccccc
Confidence            35678999999999988866532        11        1123444445422 1111122111111111222344555


Q ss_pred             cCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEE
Q 044174          107 HRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMV  186 (332)
Q Consensus       107 ~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mv  186 (332)
                      .--+ ++++|+|+|+.++||++. |                                     ..+|+.-.+-|||||+++
T Consensus        88 ~~~~-~~~fD~v~~~~~l~~~~d-~-------------------------------------~~~l~~~~~~LkpgG~li  128 (281)
T d2gh1a1          88 EIEL-NDKYDIAICHAFLLHMTT-P-------------------------------------ETMLQKMIHSVKKGGKII  128 (281)
T ss_dssp             TCCC-SSCEEEEEEESCGGGCSS-H-------------------------------------HHHHHHHHHTEEEEEEEE
T ss_pred             cccc-cCCceEEEEehhhhcCCC-H-------------------------------------HHHHHHHHHHcCcCcEEE
Confidence            4444 468999999999999754 2                                     135566668899999999


Q ss_pred             EEecc
Q 044174          187 IIMPG  191 (332)
Q Consensus       187 l~~~g  191 (332)
                      +.-+.
T Consensus       129 i~~~~  133 (281)
T d2gh1a1         129 CFEPH  133 (281)
T ss_dssp             EEECC
T ss_pred             EEECC
Confidence            87653

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=98.33  E-value=1e-06  Score=78.95  Aligned_cols=77  Identities=21%  Similarity=0.144  Sum_probs=48.8

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCcccc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHH  107 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~  107 (332)
                      .+..+|+|+|||+|..+..+.+.                 .|..+++-.|+-. +.....+...  .+  +.-+-|+...
T Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~-----------------~~~~~~~giD~s~-~~~~~a~~~~--~~--~~~~~~d~~~  140 (268)
T d1p91a_          83 DKATAVLDIGCGEGYYTHAFADA-----------------LPEITTFGLDVSK-VAIKAAAKRY--PQ--VTFCVASSHR  140 (268)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHT-----------------CTTSEEEEEESCH-HHHHHHHHHC--TT--SEEEECCTTS
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHH-----------------CCCCEEEEecchH-hhhhhhhccc--cc--ccceeeehhh
Confidence            55689999999999998766431                 2345555555422 1111111111  11  2224567788


Q ss_pred             CCcCCCceeEEEecCcccc
Q 044174          108 RLFPQSSIHFAHCSYALHW  126 (332)
Q Consensus       108 ~lfP~~svd~~~S~~alHW  126 (332)
                      ..||++|+|+++|..++|+
T Consensus       141 l~~~~~sfD~v~~~~~~~~  159 (268)
T d1p91a_         141 LPFSDTSMDAIIRIYAPCK  159 (268)
T ss_dssp             CSBCTTCEEEEEEESCCCC
T ss_pred             ccCCCCCEEEEeecCCHHH
Confidence            8899999999999888776

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.09  E-value=1.6e-06  Score=75.18  Aligned_cols=113  Identities=13%  Similarity=0.155  Sum_probs=68.6

Q ss_pred             ceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCccc--ccceeeecCCcccc
Q 044174           30 IIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQ--REYYSAGVPGSFHH  107 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~--~~~f~~~vpgSFy~  107 (332)
                      ...|+|+|||+|..++.++..                 .|+..++-.|.-.+=.....+.....  .++.+.-.......
T Consensus        30 ~PlvLeIGcG~G~~~~~lA~~-----------------~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~   92 (204)
T d2fcaa1          30 NPIHIEVGTGKGQFISGMAKQ-----------------NPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLT   92 (204)
T ss_dssp             CCEEEEECCTTSHHHHHHHHH-----------------CTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHH
T ss_pred             CceEEEEEecCcHHHHHHHHh-----------------CCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhh
Confidence            347999999999999887431                 35566666666544443333332211  13332222222223


Q ss_pred             CCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEE
Q 044174          108 RLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVI  187 (332)
Q Consensus       108 ~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl  187 (332)
                      ..||++++|.++.++..+|..+.-.           |.++.                   ...||+.-++-|||||.+++
T Consensus        93 ~~~~~~~~d~v~i~fp~P~~k~~h~-----------k~Rl~-------------------~~~~l~~~~r~LkpgG~l~i  142 (204)
T d2fcaa1          93 DVFEPGEVKRVYLNFSDPWPKKRHE-----------KRRLT-------------------YSHFLKKYEEVMGKGGSIHF  142 (204)
T ss_dssp             HHCCTTSCCEEEEESCCCCCSGGGG-----------GGSTT-------------------SHHHHHHHHHHHTTSCEEEE
T ss_pred             cccCchhhhccccccccccchhhhc-----------chhhh-------------------HHHHHHHHHHhCCCCcEEEE
Confidence            4689999999999999999543110           11111                   02466667778889999988


Q ss_pred             Ee
Q 044174          188 IM  189 (332)
Q Consensus       188 ~~  189 (332)
                      ..
T Consensus       143 ~T  144 (204)
T d2fcaa1         143 KT  144 (204)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.00  E-value=1.1e-05  Score=70.00  Aligned_cols=95  Identities=9%  Similarity=-0.032  Sum_probs=50.4

Q ss_pred             HHHHHHHHHhhhhcccCCCCCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHh
Q 044174            9 EKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFT   88 (332)
Q Consensus         9 ~~l~~ai~~~~~~~~~~~~~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~   88 (332)
                      |.+...+-+.+.      ..+..+|+|+|||+|..|..+...+-                +.-.|+-.|.-. +.....+
T Consensus        61 P~~~a~~l~~l~------l~~g~~VLdiG~GtG~~s~~la~~~~----------------~~g~V~~id~~~-~~~~~a~  117 (213)
T d1dl5a1          61 PSLMALFMEWVG------LDKGMRVLEIGGGTGYNAAVMSRVVG----------------EKGLVVSVEYSR-KICEIAK  117 (213)
T ss_dssp             HHHHHHHHHHTT------CCTTCEEEEECCTTSHHHHHHHHHHC----------------TTCEEEEEESCH-HHHHHHH
T ss_pred             chhhHHHHHhhh------ccccceEEEecCccchhHHHHHHHhC----------------CCCcEEEeecch-hhHHHhh
Confidence            555444444443      24468999999999999987643210                112222222111 1111111


Q ss_pred             c-CcccccceeeecCCccccCCcCCCceeEEEecCcccc
Q 044174           89 S-LPQQREYYSAGVPGSFHHRLFPQSSIHFAHCSYALHW  126 (332)
Q Consensus        89 ~-l~~~~~~f~~~vpgSFy~~lfP~~svd~~~S~~alHW  126 (332)
                      . +....---+..+-|+...-+++++++|.+++.+++|+
T Consensus       118 ~~~~~~~~~n~~~~~~d~~~~~~~~~~fD~I~~~~~~~~  156 (213)
T d1dl5a1         118 RNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVTVGVDE  156 (213)
T ss_dssp             HHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSBBSC
T ss_pred             hhHhhhcccccccccCchHHccccccchhhhhhhccHHH
Confidence            1 1111000011133566666777889999999999887

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=1.1e-05  Score=70.63  Aligned_cols=98  Identities=12%  Similarity=-0.069  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHhhhhcccCCCCCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHH
Q 044174            8 KEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLF   87 (332)
Q Consensus         8 ~~~l~~ai~~~~~~~~~~~~~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf   87 (332)
                      .|.+..-+-+++...    ..+..+|+|+|||+|..|..+...+ +               +.-.|+--|.-. ++-...
T Consensus        59 ~P~~~a~~le~L~~~----l~~g~~VLdiG~GsGy~ta~la~l~-~---------------~~g~V~~ie~~~-~l~~~a  117 (224)
T d1i1na_          59 APHMHAYALELLFDQ----LHEGAKALDVGSGSGILTACFARMV-G---------------CTGKVIGIDHIK-ELVDDS  117 (224)
T ss_dssp             CHHHHHHHHHHTTTT----SCTTCEEEEETCTTSHHHHHHHHHH-C---------------TTCEEEEEESCH-HHHHHH
T ss_pred             hhHHHHHHHHHHhhc----cCCCCeEEEecCCCCHHHHHHHHHh-C---------------CCceEEEEcCCH-HHHHHH
Confidence            466665555555322    3446899999999999997765421 0               011111111110 011111


Q ss_pred             h-cCccc-----ccceeeecCCccccCCcCCCceeEEEecCcccc
Q 044174           88 T-SLPQQ-----REYYSAGVPGSFHHRLFPQSSIHFAHCSYALHW  126 (332)
Q Consensus        88 ~-~l~~~-----~~~f~~~vpgSFy~~lfP~~svd~~~S~~alHW  126 (332)
                      + .+...     ....+..+-|.-+.-.++.+++|.+++..++++
T Consensus       118 ~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~fD~I~~~~~~~~  162 (224)
T d1i1na_         118 VNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPV  162 (224)
T ss_dssp             HHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEEEECSBBSS
T ss_pred             HHhccccCcccccccceEEEEeecccccchhhhhhhhhhhcchhh
Confidence            0 01000     001223344566666778889999999999886

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.94  E-value=2.6e-05  Score=68.44  Aligned_cols=38  Identities=21%  Similarity=0.374  Sum_probs=26.1

Q ss_pred             HHHHHHHHHhhhhcccCCCCCceEEEeecCCCCcchHHHHH
Q 044174            9 EKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus         9 ~~l~~ai~~~~~~~~~~~~~~~~~iaD~GCs~G~ns~~~~~   49 (332)
                      +-|-.||..-++.  ++ ..+..+|+|+|||+|..+..+.+
T Consensus        57 sklaA~i~~gl~~--l~-ikpG~~VLDlGcGsG~~~~~la~   94 (230)
T d1g8sa_          57 SKLAAAIIKGLKV--MP-IKRDSKILYLGASAGTTPSHVAD   94 (230)
T ss_dssp             CHHHHHHHTTCCC--CC-CCTTCEEEEESCCSSHHHHHHHH
T ss_pred             cHHHHHHHhhHHh--CC-CCCCCEEEEeCEEcCHHHHHHHH
Confidence            3455666554432  22 35569999999999998887754

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.90  E-value=1.4e-05  Score=73.40  Aligned_cols=102  Identities=18%  Similarity=0.196  Sum_probs=66.3

Q ss_pred             ceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCccc--ccceeeecCCcccc
Q 044174           30 IIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQ--REYYSAGVPGSFHH  107 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~--~~~f~~~vpgSFy~  107 (332)
                      .-+|+|+|||+|..|+.+++.            +    .  -+|+-.|..  ......+.....  ..--+.-+-|+...
T Consensus        39 ~~~VLDlGcGtG~ls~~aa~~------------G----a--~~V~avd~s--~~~~~a~~~~~~~~~~~~i~~i~~~~~~   98 (328)
T d1g6q1_          39 DKIVLDVGCGTGILSMFAAKH------------G----A--KHVIGVDMS--SIIEMAKELVELNGFSDKITLLRGKLED   98 (328)
T ss_dssp             TCEEEEETCTTSHHHHHHHHT------------C----C--SEEEEEESS--THHHHHHHHHHHTTCTTTEEEEESCTTT
T ss_pred             cCEEEEeCCCCCHHHHHHHHh------------C----C--CEEEEEeCC--HHHHHHHHHHHHhCccccceEEEeehhh
Confidence            368999999999888765421            1    1  155666643  222333332211  12234445567777


Q ss_pred             CCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEE
Q 044174          108 RLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMV  186 (332)
Q Consensus       108 ~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mv  186 (332)
                      ..+|++++|+++|....|.+...                                   .++..++.+|.+-|||||+|+
T Consensus        99 l~~~~~~~D~i~se~~~~~~~~e-----------------------------------~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_          99 VHLPFPKVDIIISEWMGYFLLYE-----------------------------------SMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             SCCSSSCEEEEEECCCBTTBSTT-----------------------------------CCHHHHHHHHHHHEEEEEEEE
T ss_pred             ccCcccceeEEEEEecceeeccc-----------------------------------hhHHHHHHHHHhccCCCeEEE
Confidence            78899999999998887765441                                   134457888889999999985

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=97.87  E-value=3.1e-05  Score=68.88  Aligned_cols=23  Identities=9%  Similarity=0.182  Sum_probs=19.1

Q ss_pred             CCceEEEeecCCCCcchHHHHHH
Q 044174           28 SNIIRLADLGCAVGSNTINAMQD   50 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~   50 (332)
                      ....+|+|+|||+|..|+.++..
T Consensus        84 ~pG~rVLEiG~GsG~lt~~la~~  106 (250)
T d1yb2a1          84 RPGMDILEVGVGSGNMSSYILYA  106 (250)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHH
T ss_pred             CCcCEEEEeeeeCcHHHHHHHHH
Confidence            44589999999999999887653

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.87  E-value=2.6e-05  Score=65.98  Aligned_cols=105  Identities=11%  Similarity=0.126  Sum_probs=58.2

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhc-Cc--ccccceeeecCCc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTS-LP--QQREYYSAGVPGS  104 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~-l~--~~~~~f~~~vpgS  104 (332)
                      .+.-+|+|+|||+|..++.+...                 .+  +|+..|+-.. --.+.+. +.  ....+-+..+.+.
T Consensus        51 ~~~~~VLDiGcG~G~~~~~la~~-----------------~~--~v~~iD~s~~-~i~~a~~n~~~~~l~~~~i~~~~~d  110 (194)
T d1dusa_          51 DKDDDILDLGCGYGVIGIALADE-----------------VK--STTMADINRR-AIKLAKENIKLNNLDNYDIRVVHSD  110 (194)
T ss_dssp             CTTCEEEEETCTTSHHHHHHGGG-----------------SS--EEEEEESCHH-HHHHHHHHHHHTTCTTSCEEEEECS
T ss_pred             CCCCeEEEEeecCChhHHHHHhh-----------------cc--ccceeeeccc-cchhHHHHHHHhCCccceEEEEEcc
Confidence            44579999999999888765321                 11  1222332110 0011110 00  0011223345555


Q ss_pred             cccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCe
Q 044174          105 FHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGM  184 (332)
Q Consensus       105 Fy~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~  184 (332)
                      +++ -++++++|+++|+..+|+...                                     ....+|+.=.+-|+|||+
T Consensus       111 ~~~-~~~~~~fD~Ii~~~p~~~~~~-------------------------------------~~~~~l~~~~~~LkpgG~  152 (194)
T d1dusa_         111 LYE-NVKDRKYNKIITNPPIRAGKE-------------------------------------VLHRIIEEGKELLKDNGE  152 (194)
T ss_dssp             TTT-TCTTSCEEEEEECCCSTTCHH-------------------------------------HHHHHHHHHHHHEEEEEE
T ss_pred             hhh-hhccCCceEEEEcccEEecch-------------------------------------hhhhHHHHHHHhcCcCcE
Confidence            555 567889999999877765211                                     123355555567899999


Q ss_pred             EEEEec
Q 044174          185 MVIIMP  190 (332)
Q Consensus       185 mvl~~~  190 (332)
                      |+++..
T Consensus       153 l~i~~~  158 (194)
T d1dusa_         153 IWVVIQ  158 (194)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            988653

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.87  E-value=9e-06  Score=70.23  Aligned_cols=113  Identities=14%  Similarity=0.138  Sum_probs=68.7

Q ss_pred             ceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcc--cccceeeecCCcccc
Q 044174           30 IIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQ--QREYYSAGVPGSFHH  107 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~--~~~~f~~~vpgSFy~  107 (332)
                      ...|+|+|||+|..++.++..                 .|+..++-.|.-.+=.....+....  ..++.+....+.-..
T Consensus        32 ~plvLdIGcG~G~~~~~lA~~-----------------~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~   94 (204)
T d1yzha1          32 NPIHVEVGSGKGAFVSGMAKQ-----------------NPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLT   94 (204)
T ss_dssp             CCEEEEESCTTSHHHHHHHHH-----------------CTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGG
T ss_pred             CCeEEEEeccCCHHHHHHHHH-----------------CCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHh
Confidence            357999999999999887531                 2455666666544433333332221  113333333222234


Q ss_pred             CCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEE
Q 044174          108 RLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVI  187 (332)
Q Consensus       108 ~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl  187 (332)
                      ..||++|+|.++.++.-.|-.+--..           -++.                   -..||+.=++-|||||.+.+
T Consensus        95 ~~~~~~~~~~i~i~fPdPw~K~~h~k-----------rRl~-------------------~~~~l~~~~~~LkpgG~l~i  144 (204)
T d1yzha1          95 DYFEDGEIDRLYLNFSDPWPKKRHEK-----------RRLT-------------------YKTFLDTFKRILPENGEIHF  144 (204)
T ss_dssp             GTSCTTCCSEEEEESCCCCCSGGGGG-----------GSTT-------------------SHHHHHHHHHHSCTTCEEEE
T ss_pred             hhccCCceehhcccccccccchhhhh-----------hhhh-------------------HHHHHHHHHHhCCCCcEEEE
Confidence            57899999999999999995542111           0110                   02467777788999999987


Q ss_pred             Ee
Q 044174          188 IM  189 (332)
Q Consensus       188 ~~  189 (332)
                      ..
T Consensus       145 ~T  146 (204)
T d1yzha1         145 KT  146 (204)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=3.6e-05  Score=70.83  Aligned_cols=95  Identities=15%  Similarity=0.163  Sum_probs=60.7

Q ss_pred             CCceEEEeecCCCCcchHHHHHH---------------------HHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHH
Q 044174           28 SNIIRLADLGCAVGSNTINAMQD---------------------VLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTL   86 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~---------------------ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~l   86 (332)
                      .+.-+|+|+|||+|.-++.++..                     .+...+.++...+  .....+.+...|.-..+|...
T Consensus       150 ~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g--~~~~~i~~~~gd~~~~~~~~~  227 (328)
T d1nw3a_         150 TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYG--KKHAEYTLERGDFLSEEWRER  227 (328)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHT--CCCCCEEEEECCTTSHHHHHH
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhcc--ccCCceEEEECcccccccccc
Confidence            44579999999999999877621                     1111222222222  124567777777777666542


Q ss_pred             HhcCcccccceeeecCCccccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHH
Q 044174           87 FTSLPQQREYYSAGVPGSFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAK  166 (332)
Q Consensus        87 f~~l~~~~~~f~~~vpgSFy~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~  166 (332)
                      +.                         ..|+++++..+||                                       .
T Consensus       228 ~~-------------------------~advi~~~~~~f~---------------------------------------~  243 (328)
T d1nw3a_         228 IA-------------------------NTSVIFVNNFAFG---------------------------------------P  243 (328)
T ss_dssp             HH-------------------------HCSEEEECCTTTC---------------------------------------H
T ss_pred             cC-------------------------cceEEEEcceecc---------------------------------------h
Confidence            11                         3567887776676                                       2


Q ss_pred             HHHHHHHHHHHhhccCCeEEEE
Q 044174          167 DMENFLNARAEEIVSGGMMVII  188 (332)
Q Consensus       167 d~~~fL~~Ra~EL~pGG~mvl~  188 (332)
                      |+...|+...+.|||||++|+.
T Consensus       244 ~~~~~l~e~~r~LKpGg~iv~~  265 (328)
T d1nw3a_         244 EVDHQLKERFANMKEGGRIVSS  265 (328)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEES
T ss_pred             HHHHHHHHHHHhCCCCcEEEEe
Confidence            3445677778899999999875

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.79  E-value=2e-05  Score=71.93  Aligned_cols=103  Identities=13%  Similarity=0.081  Sum_probs=67.2

Q ss_pred             ceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCccc-ccceeeecCCccccC
Q 044174           30 IIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQ-REYYSAGVPGSFHHR  108 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~-~~~f~~~vpgSFy~~  108 (332)
                      .-+|+|+|||+|..|+.+++.            +    .  -+|+--|... .....-+..... ..--+.-+-|...+-
T Consensus        34 ~~~VLDiGcG~G~ls~~aa~~------------G----a--~~V~avd~s~-~~~~a~~~~~~n~~~~~v~~~~~~~~~~   94 (316)
T d1oria_          34 DKVVLDVGSGTGILCMFAAKA------------G----A--RKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEV   94 (316)
T ss_dssp             TCEEEEETCTTSHHHHHHHHT------------T----C--SEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTC
T ss_pred             cCEEEEEecCCcHHHHHHHHh------------C----C--CEEEEEcCcH-HHhhhhhHHHHhCCccccceEeccHHHc
Confidence            357999999999888765431            1    1  2466667432 222222221111 122245566788888


Q ss_pred             CcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEE
Q 044174          109 LFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMV  186 (332)
Q Consensus       109 lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mv  186 (332)
                      -+|.+++|+++|....|.+-..                                   .++..+|.+|.+-|+|||+++
T Consensus        95 ~~~~~~~D~ivs~~~~~~l~~e-----------------------------------~~~~~~l~~~~r~Lkp~G~ii  137 (316)
T d1oria_          95 ELPVEKVDIIISEWMGYCLFYE-----------------------------------SMLNTVLHARDKWLAPDGLIF  137 (316)
T ss_dssp             CCSSSCEEEEEECCCBBTBTBT-----------------------------------CCHHHHHHHHHHHEEEEEEEE
T ss_pred             ccccceeEEEeeeeeeeeeccH-----------------------------------HHHHHHHHHHHhcCCCCeEEE
Confidence            8999999999998777764331                                   134568889999999999986

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.77  E-value=2.7e-05  Score=65.54  Aligned_cols=21  Identities=24%  Similarity=0.409  Sum_probs=18.0

Q ss_pred             CCceEEEeecCCCCcchHHHH
Q 044174           28 SNIIRLADLGCAVGSNTINAM   48 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~   48 (332)
                      .+.-+|+|+|||+|..|+.++
T Consensus        32 ~~g~~VLDiGcGsG~~s~~lA   52 (186)
T d1l3ia_          32 GKNDVAVDVGCGTGGVTLELA   52 (186)
T ss_dssp             CTTCEEEEESCTTSHHHHHHH
T ss_pred             CCCCEEEEEECCeEccccccc
Confidence            446799999999999998875

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.74  E-value=1.5e-05  Score=71.53  Aligned_cols=51  Identities=16%  Similarity=0.203  Sum_probs=37.4

Q ss_pred             CcCCCceeEEEec-CccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEE
Q 044174          109 LFPQSSIHFAHCS-YALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVI  187 (332)
Q Consensus       109 lfP~~svd~~~S~-~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl  187 (332)
                      +.+.+++|++++. .+++++...-..                               ..|...+|+.-++-|||||+|++
T Consensus       124 ~~~~~~fd~v~~~~~~~~~~~~~~~~-------------------------------~~~~~~~l~~~~~~LkpgG~li~  172 (292)
T d1xvaa_         124 VPAGDGFDAVICLGNSFAHLPDSKGD-------------------------------QSEHRLALKNIASMVRPGGLLVI  172 (292)
T ss_dssp             SCCTTCEEEEEECSSCGGGSCCTTSS-------------------------------SHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             cCCCCCceEEEEecCchhhcCCcccC-------------------------------hHHHHHHHHHHHHHcCcCcEEEE
Confidence            4456789998875 578875442111                               24677899999999999999999


Q ss_pred             Eec
Q 044174          188 IMP  190 (332)
Q Consensus       188 ~~~  190 (332)
                      .+.
T Consensus       173 ~~~  175 (292)
T d1xvaa_         173 DHR  175 (292)
T ss_dssp             EEE
T ss_pred             eec
Confidence            875

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=3.6e-05  Score=69.86  Aligned_cols=116  Identities=16%  Similarity=0.171  Sum_probs=69.5

Q ss_pred             HHHHHHHhhhhcccCCCCCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcC
Q 044174           11 IVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSL   90 (332)
Q Consensus        11 l~~ai~~~~~~~~~~~~~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l   90 (332)
                      -.+||.+....      -+.-+|+|+|||+|..|+.+++.            +      .-+|+-.|...  ....++..
T Consensus        23 y~~ai~~~~~~------~~~~~VLDiGcG~G~lsl~aa~~------------G------a~~V~aid~s~--~~~~a~~~   76 (311)
T d2fyta1          23 YRDFIYQNPHI------FKDKVVLDVGCGTGILSMFAAKA------------G------AKKVLGVDQSE--ILYQAMDI   76 (311)
T ss_dssp             HHHHHHHCGGG------TTTCEEEEETCTTSHHHHHHHHT------------T------CSEEEEEESST--HHHHHHHH
T ss_pred             HHHHHHhcccc------CCcCEEEEECCCCCHHHHHHHHc------------C------CCEEEEEeCHH--HHHHHHHH
Confidence            34566554332      23468999999999888766431            1      12556666432  12112211


Q ss_pred             -c-ccccceeeecCCccccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHH
Q 044174           91 -P-QQREYYSAGVPGSFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDM  168 (332)
Q Consensus        91 -~-~~~~~f~~~vpgSFy~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~  168 (332)
                       . .....-+.-+.|...+--+|.+++|+++|....|-+..              .                     ..+
T Consensus        77 ~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~~~~~~~--------------e---------------------~~~  121 (311)
T d2fyta1          77 IRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLF--------------E---------------------SML  121 (311)
T ss_dssp             HHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCBTTBTT--------------T---------------------CHH
T ss_pred             HHHhCCCccceEEEeeHHHhcCccccceEEEEeeeeeeccc--------------c---------------------ccc
Confidence             1 11112233456677777789999999999666554322              1                     134


Q ss_pred             HHHHHHHHHhhccCCeEEE
Q 044174          169 ENFLNARAEEIVSGGMMVI  187 (332)
Q Consensus       169 ~~fL~~Ra~EL~pGG~mvl  187 (332)
                      ..++.+|.+-|+|||+++.
T Consensus       122 ~~~~~a~~~~Lkp~G~iip  140 (311)
T d2fyta1         122 DSVLYAKNKYLAKGGSVYP  140 (311)
T ss_dssp             HHHHHHHHHHEEEEEEEES
T ss_pred             HHHHHHHHhcCCCCcEEec
Confidence            5678888899999999973

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=97.63  E-value=7.1e-05  Score=67.36  Aligned_cols=119  Identities=13%  Similarity=0.209  Sum_probs=66.4

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHh-cCcccccceeeecCCccc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFT-SLPQQREYYSAGVPGSFH  106 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~-~l~~~~~~f~~~vpgSFy  106 (332)
                      .++.+|+|+|||+|.-++.++..                 .|..+|+..|.-. +--.+.+ +.....---+.-+-|+++
T Consensus       107 ~~~~~vlDlGtGSG~I~i~la~~-----------------~p~~~v~avDis~-~Al~~A~~Na~~~~~~~v~~~~~d~~  168 (274)
T d2b3ta1         107 EQPCRILDLGTGTGAIALALASE-----------------RPDCEIIAVDRMP-DAVSLAQRNAQHLAIKNIHILQSDWF  168 (274)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHH-----------------CTTSEEEEECSSH-HHHHHHHHHHHHHTCCSEEEECCSTT
T ss_pred             ccccceeeeehhhhHHHHHHHhh-----------------CCcceeeeccchh-HHHhHHHHHHHHhCcccceeeecccc
Confidence            45688999999999999887531                 2345666666422 1111111 111000001334555666


Q ss_pred             cCCcCCCceeEEEecCccccccCCccccccC------------CCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHH
Q 044174          107 HRLFPQSSIHFAHCSYALHWLSKVPEELLDE------------NSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNA  174 (332)
Q Consensus       107 ~~lfP~~svd~~~S~~alHWLs~~P~~~~~~------------~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~  174 (332)
                      .. +|++++|+++||         |+-+...            ...++..|                +.....++.+++.
T Consensus       169 ~~-~~~~~fDlIvsN---------PPYi~~~~~~~~~~v~~~eP~~AL~~g----------------~dGl~~~~~i~~~  222 (274)
T d2b3ta1         169 SA-LAGQQFAMIVSN---------PPYIDEQDPHLQQGDVRFEPLTALVAA----------------DSGMADIVHIIEQ  222 (274)
T ss_dssp             GG-GTTCCEEEEEEC---------CCCBCTTCHHHHSSGGGSSCSTTTBCH----------------HHHTHHHHHHHHH
T ss_pred             cc-cCCCceeEEEec---------chhhhhhhhcccccccccchhhhcccc----------------cccchHHHHHHHH
Confidence            53 467799999996         3322211            11111111                2344556667776


Q ss_pred             HHHhhccCCeEEEEec
Q 044174          175 RAEEIVSGGMMVIIMP  190 (332)
Q Consensus       175 Ra~EL~pGG~mvl~~~  190 (332)
                      =.+-|+|||.++++++
T Consensus       223 a~~~L~~~G~l~lEig  238 (274)
T d2b3ta1         223 SRNALVSGGFLLLEHG  238 (274)
T ss_dssp             HGGGEEEEEEEEEECC
T ss_pred             HHHhcCCCCEEEEEEC
Confidence            6677899999999874

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.60  E-value=0.00036  Score=62.26  Aligned_cols=119  Identities=18%  Similarity=0.209  Sum_probs=69.3

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhc-Ccc---cccceeeecCC
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTS-LPQ---QREYYSAGVPG  103 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~-l~~---~~~~f~~~vpg  103 (332)
                      ....+|+|.|||+|..|+.++..+-                |.-+|+--|.- -|+-...+. +..   ....-+.-+-+
T Consensus        95 ~PG~~VLE~G~GsG~lt~~La~~vg----------------p~G~V~~~d~~-~~~~~~Ar~n~~~~~~~~~~nv~~~~~  157 (264)
T d1i9ga_          95 FPGARVLEAGAGSGALTLSLLRAVG----------------PAGQVISYEQR-ADHAEHARRNVSGCYGQPPDNWRLVVS  157 (264)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHC----------------TTSEEEEECSC-HHHHHHHHHHHHHHHTSCCTTEEEECS
T ss_pred             CCCCEEEecCcCCcHHHHHHHHhhC----------------CCcEEEEecCC-HHHHHHHHHhhhhhccCCCceEEEEec
Confidence            4468999999999999998865431                11222222211 133333221 110   00112333456


Q ss_pred             ccccCCcCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 044174          104 SFHHRLFPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGG  183 (332)
Q Consensus       104 SFy~~lfP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG  183 (332)
                      .+.+.-+|++++|.+|.-        +|..-                                   .+|..-++-|||||
T Consensus       158 d~~~~~~~~~~fDaV~ld--------lp~P~-----------------------------------~~l~~~~~~LkpGG  194 (264)
T d1i9ga_         158 DLADSELPDGSVDRAVLD--------MLAPW-----------------------------------EVLDAVSRLLVAGG  194 (264)
T ss_dssp             CGGGCCCCTTCEEEEEEE--------SSCGG-----------------------------------GGHHHHHHHEEEEE
T ss_pred             ccccccccCCCcceEEEe--------cCCHH-----------------------------------HHHHHHHhccCCCC
Confidence            677777899999999862        33221                                   13445568899999


Q ss_pred             eEEEEecccCCCCCCCCcchhHHHHHHHHHHHHHHHhh
Q 044174          184 MMVIIMPGIPYGMPYSHLTNGVMYDLMATIFMELANEQ  221 (332)
Q Consensus       184 ~mvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eG  221 (332)
                      ++++..+.               .+.+.+++..|..++
T Consensus       195 ~lv~~~P~---------------i~Qv~~~~~~l~~~~  217 (264)
T d1i9ga_         195 VLMVYVAT---------------VTQLSRIVEALRAKQ  217 (264)
T ss_dssp             EEEEEESS---------------HHHHHHHHHHHHHHS
T ss_pred             EEEEEeCc---------------cChHHHHHHHHHHcC
Confidence            99988754               245666666665553

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.55  E-value=0.00022  Score=61.28  Aligned_cols=22  Identities=23%  Similarity=0.208  Sum_probs=17.8

Q ss_pred             CCCceEEEeecCCCCcchHHHH
Q 044174           27 ASNIIRLADLGCAVGSNTINAM   48 (332)
Q Consensus        27 ~~~~~~iaD~GCs~G~ns~~~~   48 (332)
                      ..+..+|+|+|||+|..+..+.
T Consensus        54 lkpg~~VLDlGcG~G~~~~~la   75 (209)
T d1nt2a_          54 LRGDERVLYLGAASGTTVSHLA   75 (209)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHH
T ss_pred             CCCCCEEEEeCCcCCHHHHHHH
Confidence            3556899999999998776664

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=97.54  E-value=0.0002  Score=62.40  Aligned_cols=35  Identities=11%  Similarity=0.107  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHhhhhcccCCCCCceEEEeecCCCCcchHHHH
Q 044174            8 KEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAM   48 (332)
Q Consensus         8 ~~~l~~ai~~~~~~~~~~~~~~~~~iaD~GCs~G~ns~~~~   48 (332)
                      .|.+..-+-+.++      ..+..+|+|+|||+|..|..+.
T Consensus        55 ~p~~~a~ml~~L~------l~~g~~VLdIG~GsGy~ta~La   89 (224)
T d1vbfa_          55 ALNLGIFMLDELD------LHKGQKVLEIGTGIGYYTALIA   89 (224)
T ss_dssp             CHHHHHHHHHHTT------CCTTCEEEEECCTTSHHHHHHH
T ss_pred             hhhhHHHHHHHhh------hcccceEEEecCCCCHHHHHHH
Confidence            4444444444443      2445799999999999997654

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=0.00019  Score=62.04  Aligned_cols=22  Identities=14%  Similarity=0.243  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHHhhccCCeEEE
Q 044174          166 KDMENFLNARAEEIVSGGMMVI  187 (332)
Q Consensus       166 ~d~~~fL~~Ra~EL~pGG~mvl  187 (332)
                      .|...||+.-.+-|||||+|++
T Consensus       140 ~~~~~~~~~~~r~LkpGG~~~~  161 (229)
T d1zx0a1         140 HQFNFIKNHAFRLLKPGGVLTY  161 (229)
T ss_dssp             HHHHHHHHTHHHHEEEEEEEEE
T ss_pred             cCHHHHHHHHHHHcCCCcEEEE
Confidence            3566678888888999999976

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.51  E-value=0.00047  Score=60.06  Aligned_cols=38  Identities=21%  Similarity=0.200  Sum_probs=25.7

Q ss_pred             HHHHHHHHHhhhhcccCCCCCceEEEeecCCCCcchHHHHH
Q 044174            9 EKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus         9 ~~l~~ai~~~~~~~~~~~~~~~~~iaD~GCs~G~ns~~~~~   49 (332)
                      +-|-.||..-++.  ++ ..+..+|+|+|||+|..|..+.+
T Consensus        56 SKlaa~i~~~l~~--l~-i~pG~~VLDlGaGsG~~t~~la~   93 (227)
T d1g8aa_          56 SKLGAAIMNGLKN--FP-IKPGKSVLYLGIASGTTASHVSD   93 (227)
T ss_dssp             CHHHHHHHTTCCC--CC-CCTTCEEEEETTTSTTHHHHHHH
T ss_pred             cHHHHHHHccccc--cc-cCCCCEEEEeccCCCHHHHHHHH
Confidence            3455566543332  22 34568999999999999988764

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.47  E-value=0.00016  Score=68.52  Aligned_cols=22  Identities=27%  Similarity=0.344  Sum_probs=18.3

Q ss_pred             CCceEEEeecCCCCcchHHHHH
Q 044174           28 SNIIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~   49 (332)
                      ...-+|+|+|||.|..++.++.
T Consensus       215 kpgd~fLDLGCG~G~~vl~aA~  236 (406)
T d1u2za_         215 KKGDTFMDLGSGVGNCVVQAAL  236 (406)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHH
T ss_pred             CCCCEEEeCCCCCcHHHHHHHH
Confidence            4457899999999999988763

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=97.47  E-value=6e-05  Score=67.08  Aligned_cols=19  Identities=32%  Similarity=0.293  Sum_probs=16.1

Q ss_pred             ceEEEeecCCCCcchHHHH
Q 044174           30 IIRLADLGCAVGSNTINAM   48 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~   48 (332)
                      .-+|+|+|||+|..++.+.
T Consensus       121 g~~VLDiGcGsG~l~i~aa  139 (254)
T d2nxca1         121 GDKVLDLGTGSGVLAIAAE  139 (254)
T ss_dssp             TCEEEEETCTTSHHHHHHH
T ss_pred             cCEEEEcccchhHHHHHHH
Confidence            4699999999999887654

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.13  E-value=0.0012  Score=57.00  Aligned_cols=35  Identities=14%  Similarity=0.179  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHhhhhcccCCCCCceEEEeecCCCCcchHHHH
Q 044174            8 KEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAM   48 (332)
Q Consensus         8 ~~~l~~ai~~~~~~~~~~~~~~~~~iaD~GCs~G~ns~~~~   48 (332)
                      .|.+..-+-+.+++      .+..+|+|+|||+|..|..+.
T Consensus        63 ~P~~~a~ml~~L~l------~~g~~VLeIGsGsGY~taila   97 (215)
T d1jg1a_          63 APHMVAIMLEIANL------KPGMNILEVGTGSGWNAALIS   97 (215)
T ss_dssp             CHHHHHHHHHHHTC------CTTCCEEEECCTTSHHHHHHH
T ss_pred             hhhhHHHHHHhhcc------CccceEEEecCCCChhHHHHH
Confidence            36666555565543      445799999999999998665

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=97.12  E-value=0.0013  Score=58.51  Aligned_cols=22  Identities=18%  Similarity=0.161  Sum_probs=18.7

Q ss_pred             CCceEEEeecCCCCcchHHHHH
Q 044174           28 SNIIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~   49 (332)
                      .+..+|+|+|||+|.-|+.++.
T Consensus       102 ~pG~~VLDiG~GsG~lt~~lA~  123 (266)
T d1o54a_         102 KEGDRIIDTGVGSGAMCAVLAR  123 (266)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHH
Confidence            4568999999999999988754

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.004  Score=56.81  Aligned_cols=23  Identities=9%  Similarity=0.066  Sum_probs=19.4

Q ss_pred             CCceEEEeecCCCCcchHHHHHH
Q 044174           28 SNIIRLADLGCAVGSNTINAMQD   50 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~   50 (332)
                      ....+|+|+|||+|..|+.++..
T Consensus        97 ~pG~rVLE~GtGsG~lt~~LAr~  119 (324)
T d2b25a1          97 NPGDTVLEAGSGSGGMSLFLSKA  119 (324)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHH
T ss_pred             CCCCEEEEecccccHHHHHHHHH
Confidence            34579999999999999998754

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.96  E-value=0.0014  Score=55.28  Aligned_cols=43  Identities=12%  Similarity=0.138  Sum_probs=29.1

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCC
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKT   79 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp   79 (332)
                      ..+++|.+.|||+|-=+..++-.+-+.    ...     ....++|+-.|.-
T Consensus        23 ~~~lrIwsaGCstGeE~YSlA~~l~e~----~~~-----~~~~~~I~atDi~   65 (193)
T d1af7a2          23 HGEYRVWSAAASTGEEPYSIAITLADA----LGM-----APGRWKVFASDID   65 (193)
T ss_dssp             CSCEEEEESCCTTTHHHHHHHHHHHHH----HCS-----CTTSEEEEEEESC
T ss_pred             CCCeEEEEeCCCCchhHHHHHHHHHHh----hhh-----cCCceEEEeecCC
Confidence            567999999999998766654433332    111     1346899988873

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.80  E-value=0.0014  Score=56.80  Aligned_cols=107  Identities=13%  Similarity=0.051  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHhhhhcccCCCCCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHH
Q 044174            8 KEKIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLF   87 (332)
Q Consensus         8 ~~~l~~ai~~~~~~~~~~~~~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf   87 (332)
                      .|.+..-+-+.+...    ..+.-+|+|+|||+|..|..+..- ++.       .+.   .+...|+--|. ..++-...
T Consensus        63 ~P~~~a~~l~~L~~~----l~~g~~VLeIGtGsGY~ta~la~l-~g~-------~g~---~~~~~V~~iE~-~~~l~~~a  126 (223)
T d1r18a_          63 APHMHAFALEYLRDH----LKPGARILDVGSGSGYLTACFYRY-IKA-------KGV---DADTRIVGIEH-QAELVRRS  126 (223)
T ss_dssp             CHHHHHHHHHHTTTT----CCTTCEEEEESCTTSHHHHHHHHH-HHH-------SCC---CTTCEEEEEES-CHHHHHHH
T ss_pred             hhhhHHHHHHHHhhc----cCCCCeEEEecCCCCHHHHHHHHH-hhh-------ccC---CcccEEEEEec-CHHHHHHH
Confidence            355555555554221    345689999999999999776432 211       110   11122222221 01111111


Q ss_pred             h-cCccc-----ccceeeecCCccccCCcCCCceeEEEecCccccccCCccc
Q 044174           88 T-SLPQQ-----REYYSAGVPGSFHHRLFPQSSIHFAHCSYALHWLSKVPEE  133 (332)
Q Consensus        88 ~-~l~~~-----~~~f~~~vpgSFy~~lfP~~svd~~~S~~alHWLs~~P~~  133 (332)
                      + .+...     .-.-+.-+-|..+.-..+.+.+|.+++..+++   ++|..
T Consensus       127 ~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~~~~fD~Iiv~~a~~---~~p~~  175 (223)
T d1r18a_         127 KANLNTDDRSMLDSGQLLIVEGDGRKGYPPNAPYNAIHVGAAAP---DTPTE  175 (223)
T ss_dssp             HHHHHHHHHHHHHHTSEEEEESCGGGCCGGGCSEEEEEECSCBS---SCCHH
T ss_pred             HHhhhhcchhhcCccEEEEEecccccccccccceeeEEEEeech---hchHH
Confidence            1 11000     01123334455566666788999999988864   55643

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.54  E-value=0.0046  Score=49.73  Aligned_cols=20  Identities=35%  Similarity=0.287  Sum_probs=17.0

Q ss_pred             CceEEEeecCCCCcchHHHH
Q 044174           29 NIIRLADLGCAVGSNTINAM   48 (332)
Q Consensus        29 ~~~~iaD~GCs~G~ns~~~~   48 (332)
                      +.-+|+|+|||+|.-++.++
T Consensus        14 ~g~~vlDl~~GtG~~~iea~   33 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAIEAV   33 (152)
T ss_dssp             CSCEEEEETCTTCHHHHHHH
T ss_pred             CCCeEEEcCCccCHHHHHHH
Confidence            35689999999999988765

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=96.17  E-value=0.021  Score=51.40  Aligned_cols=29  Identities=7%  Similarity=0.071  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHHHHHhhccCCeEEEEec
Q 044174          162 SQFAKDMENFLNARAEEIVSGGMMVIIMP  190 (332)
Q Consensus       162 ~q~~~d~~~fL~~Ra~EL~pGG~mvl~~~  190 (332)
                      ..+.+++..+++.-.+-|+|||.+++...
T Consensus       234 ~~~~~~~~~l~~~a~~lLkpGG~Lv~~sc  262 (318)
T d1wxxa2         234 ERAYRAYKEVNLRAIKLLKEGGILATASC  262 (318)
T ss_dssp             HHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            45667777889888899999999988654

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.88  E-value=0.031  Score=50.34  Aligned_cols=30  Identities=17%  Similarity=0.068  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHHHHHhhccCCeEEEEecc
Q 044174          162 SQFAKDMENFLNARAEEIVSGGMMVIIMPG  191 (332)
Q Consensus       162 ~q~~~d~~~fL~~Ra~EL~pGG~mvl~~~g  191 (332)
                      ..+.+++..++..=.+-|+|||+|++....
T Consensus       236 ~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s  265 (324)
T d2as0a2         236 KAGLRAYFNVNFAGLNLVKDGGILVTCSCS  265 (324)
T ss_dssp             HHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred             HHHHHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence            455667778888888889999999998644

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.78  E-value=0.018  Score=50.14  Aligned_cols=38  Identities=11%  Similarity=0.007  Sum_probs=25.4

Q ss_pred             HHHHHHHhhhhcccCCCCCceEEEeecCCCCcchHHHHH
Q 044174           11 IVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus        11 l~~ai~~~~~~~~~~~~~~~~~iaD~GCs~G~ns~~~~~   49 (332)
                      .++.|.+++..... ...+..+|+|+|||+|.-++.+..
T Consensus        44 ~~~~i~~l~~~~~~-~~~~~~~~LDiGtGsg~I~~~l~~   81 (250)
T d2h00a1          44 YIHWVEDLIGHQDS-DKSTLRRGIDIGTGASCIYPLLGA   81 (250)
T ss_dssp             HHHHHHHHHCCCCG-GGCCCCEEEEESCTTTTHHHHHHH
T ss_pred             HHHHHHHHhhhhcc-CccccceEEEeCCCchHHHHHHHH
Confidence            44455554432211 135568999999999999998874

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=95.38  E-value=0.052  Score=44.65  Aligned_cols=34  Identities=12%  Similarity=0.071  Sum_probs=23.8

Q ss_pred             HHHHHHHHhhhhcccCCCCCceEEEeecCCCCcchHHHH
Q 044174           10 KIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAM   48 (332)
Q Consensus        10 ~l~~ai~~~~~~~~~~~~~~~~~iaD~GCs~G~ns~~~~   48 (332)
                      .+.|||-..+...     -..-+|+|++||+|.-++.++
T Consensus        29 ~vre~lfn~l~~~-----~~~~~vLDlfaGsG~~gieal   62 (183)
T d2fpoa1          29 RVRETLFNWLAPV-----IVDAQCLDCFAGSGALGLEAL   62 (183)
T ss_dssp             HHHHHHHHHHHHH-----HTTCEEEETTCTTCHHHHHHH
T ss_pred             HHHHHHHhhhhcc-----cchhhhhhhhccccceeeeEE
Confidence            4446665544322     123689999999999999887

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.71  E-value=0.017  Score=48.49  Aligned_cols=25  Identities=24%  Similarity=0.525  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHhhccCCeEEEEec
Q 044174          166 KDMENFLNARAEEIVSGGMMVIIMP  190 (332)
Q Consensus       166 ~d~~~fL~~Ra~EL~pGG~mvl~~~  190 (332)
                      ......|..+..-|+|||+|++...
T Consensus       118 ~~~~~~L~~a~~~Lk~gG~l~ii~f  142 (192)
T d1m6ya2         118 ENLKEFLKKAEDLLNPGGRIVVISF  142 (192)
T ss_dssp             HHHHHHHHHGGGGEEEEEEEEEEES
T ss_pred             hhHHHHHHHHHHhcCCCCeeeeecc
Confidence            4556789999999999999987653

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=94.41  E-value=0.071  Score=43.95  Aligned_cols=22  Identities=23%  Similarity=0.284  Sum_probs=17.4

Q ss_pred             CCceEEEeecCCCCcchHHHHH
Q 044174           28 SNIIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~   49 (332)
                      .+..+|+|||||.|+-+..+.+
T Consensus        21 k~~~~vlDLg~aPGgw~q~~~~   42 (180)
T d1ej0a_          21 KPGMTVVDLGAAPGGWSQYVVT   42 (180)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHH
T ss_pred             CCCCeEEEEeccCCcceEEEEe
Confidence            4567899999999998765543

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=93.45  E-value=0.074  Score=47.29  Aligned_cols=128  Identities=8%  Similarity=0.001  Sum_probs=64.3

Q ss_pred             CCceEEEeecCCCCcchHHHHHHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCchHHHHhcCcccccceeeecCCcccc
Q 044174           28 SNIIRLADLGCAVGSNTINAMQDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSNDFNTLFTSLPQQREYYSAGVPGSFHH  107 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~NDFn~lf~~l~~~~~~f~~~vpgSFy~  107 (332)
                      .+..+|+|.|||+|.-.+.++..+    .+.        ..+.++++-.|.-..=. .+.+........-....-+.+. 
T Consensus       116 ~~~~~vlDp~~GsG~~l~~~~~~l----~~~--------~~~~~~~~g~di~~~~~-~~a~~~~~~~~~~~~~~~~d~~-  181 (328)
T d2f8la1         116 KKNVSILDPACGTANLLTTVINQL----ELK--------GDVDVHASGVDVDDLLI-SLALVGADLQRQKMTLLHQDGL-  181 (328)
T ss_dssp             CSEEEEEETTCTTSHHHHHHHHHH----HTT--------SSCEEEEEEEESCHHHH-HHHHHHHHHHTCCCEEEESCTT-
T ss_pred             CCCCEEEeCCCCcchhHHHHHHHH----Hhc--------cCccceEEEecccHHHH-HHHHHHHHHhhhhhhhhccccc-
Confidence            557899999999997766655443    221        24567888777522111 1111110000000111112222 


Q ss_pred             CCcCCCceeEEEecCc--cccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeE
Q 044174          108 RLFPQSSIHFAHCSYA--LHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMM  185 (332)
Q Consensus       108 ~lfP~~svd~~~S~~a--lHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~m  185 (332)
                      ...|...+|+|.++=-  .+|...    ...........|...                  -+..|+..=.+-|+|||++
T Consensus       182 ~~~~~~~fD~vi~NPPy~~~~~~~----~~~~~~~~~~~~~~~------------------~~~~Fi~~~~~~Lk~~G~~  239 (328)
T d2f8la1         182 ANLLVDPVDVVISDLPVGYYPDDE----NAKTFELCREEGHSF------------------AHFLFIEQGMRYTKPGGYL  239 (328)
T ss_dssp             SCCCCCCEEEEEEECCCSEESCHH----HHTTSTTCCSSSCEE------------------HHHHHHHHHHHTEEEEEEE
T ss_pred             cccccccccccccCCCCCCCccch----hhhhcchhcccCcch------------------HHHHHHHHHHHhcCCCCce
Confidence            2357788999999733  222111    000000011111110                  1224677667889999999


Q ss_pred             EEEecc
Q 044174          186 VIIMPG  191 (332)
Q Consensus       186 vl~~~g  191 (332)
                      ++.++.
T Consensus       240 ~~I~p~  245 (328)
T d2f8la1         240 FFLVPD  245 (328)
T ss_dssp             EEEEEG
T ss_pred             EEEecC
Confidence            999875

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=93.11  E-value=0.089  Score=46.27  Aligned_cols=18  Identities=28%  Similarity=0.499  Sum_probs=14.9

Q ss_pred             ceEEEeecCCCCcchHHH
Q 044174           30 IIRLADLGCAVGSNTINA   47 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~   47 (332)
                      ..+|+|+|||+|.-++.+
T Consensus       111 ~~~vld~g~GsG~i~~~l  128 (271)
T d1nv8a_         111 IKTVADIGTGSGAIGVSV  128 (271)
T ss_dssp             CCEEEEESCTTSHHHHHH
T ss_pred             ccEEEEeeeeeehhhhhh
Confidence            468999999999877664

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=91.85  E-value=1.4  Score=38.95  Aligned_cols=21  Identities=14%  Similarity=0.164  Sum_probs=18.2

Q ss_pred             CCceEEEeecCCCCcchHHHH
Q 044174           28 SNIIRLADLGCAVGSNTINAM   48 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~   48 (332)
                      .+..+|+|++|++|.-|+.++
T Consensus       131 ~~~~rVLdlf~~tG~~sl~aa  151 (309)
T d2igta1         131 DRPLKVLNLFGYTGVASLVAA  151 (309)
T ss_dssp             SSCCEEEEETCTTCHHHHHHH
T ss_pred             cCCCeEEEecCCCcHHHHHHH
Confidence            445799999999999999876

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=91.40  E-value=0.93  Score=38.96  Aligned_cols=21  Identities=10%  Similarity=0.067  Sum_probs=18.0

Q ss_pred             CCceEEEeecCCCCcchHHHH
Q 044174           28 SNIIRLADLGCAVGSNTINAM   48 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~   48 (332)
                      .+.-+|+|+|||+|+-|+.++
T Consensus       106 ~~g~~VlD~~aG~G~~~l~~a  126 (260)
T d2frna1         106 KPDELVVDMFAGIGHLSLPIA  126 (260)
T ss_dssp             CTTCEEEETTCTTTTTHHHHH
T ss_pred             CCccEEEECcceEcHHHHHHH
Confidence            345799999999999998875

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=90.29  E-value=0.87  Score=40.36  Aligned_cols=27  Identities=15%  Similarity=0.335  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHHHhhccCCeEEEEec
Q 044174          164 FAKDMENFLNARAEEIVSGGMMVIIMP  190 (332)
Q Consensus       164 ~~~d~~~fL~~Ra~EL~pGG~mvl~~~  190 (332)
                      +.+|+...++.=.+-|+|||.+++...
T Consensus       238 ~~~~~~~L~~~a~~ll~pgG~l~~~sc  264 (317)
T d2b78a2         238 VSKDYHKLIRQGLEILSENGLIIASTN  264 (317)
T ss_dssp             HHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            456777778777788999999998764

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=88.22  E-value=0.18  Score=40.80  Aligned_cols=35  Identities=17%  Similarity=0.129  Sum_probs=23.1

Q ss_pred             HHHHHHHHhhhhcccCCCCCceEEEeecCCCCcchHHHH
Q 044174           10 KIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAM   48 (332)
Q Consensus        10 ~l~~ai~~~~~~~~~~~~~~~~~iaD~GCs~G~ns~~~~   48 (332)
                      ++.|++-..+...    .+..-+|+|+|||+|..++.++
T Consensus        26 ~v~e~lf~~l~~~----~~~g~~vLDl~~G~G~~~i~a~   60 (171)
T d1ws6a1          26 RLRKALFDYLRLR----YPRRGRFLDPFAGSGAVGLEAA   60 (171)
T ss_dssp             HHHHHHHHHHHHH----CTTCCEEEEETCSSCHHHHHHH
T ss_pred             HHHHHHHHHhhcc----ccCCCeEEEeccccchhhhhhh
Confidence            4555554444322    2345689999999999887665

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=86.21  E-value=0.23  Score=41.18  Aligned_cols=19  Identities=32%  Similarity=0.368  Sum_probs=16.1

Q ss_pred             ceEEEeecCCCCcchHHHH
Q 044174           30 IIRLADLGCAVGSNTINAM   48 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~   48 (332)
                      .-+|+|+|||+|.-++.++
T Consensus        47 g~~vLDlg~GtG~l~i~a~   65 (201)
T d1wy7a1          47 GKVVADLGAGTGVLSYGAL   65 (201)
T ss_dssp             TCEEEEETCTTCHHHHHHH
T ss_pred             CCEEEECcCcchHHHHHHH
Confidence            4689999999999887664

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=86.08  E-value=0.15  Score=42.54  Aligned_cols=19  Identities=16%  Similarity=0.080  Sum_probs=15.4

Q ss_pred             ceEEEeecCCCCcchHHHH
Q 044174           30 IIRLADLGCAVGSNTINAM   48 (332)
Q Consensus        30 ~~~iaD~GCs~G~ns~~~~   48 (332)
                      .-+|+|+|||+|.-++.+.
T Consensus        49 Gk~VLDlGcGtG~l~i~a~   67 (197)
T d1ne2a_          49 GRSVIDAGTGNGILACGSY   67 (197)
T ss_dssp             TSEEEEETCTTCHHHHHHH
T ss_pred             CCEEEEeCCCCcHHHHHHH
Confidence            4699999999998776543

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=85.44  E-value=0.64  Score=38.57  Aligned_cols=56  Identities=14%  Similarity=0.279  Sum_probs=33.8

Q ss_pred             cCCCceeEEEecCccccccCCccccccCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEe
Q 044174          110 FPQSSIHFAHCSYALHWLSKVPEELLDENSPAWNKGRIHYTNAAEEVVNAYASQFAKDMENFLNARAEEIVSGGMMVIIM  189 (332)
Q Consensus       110 fP~~svd~~~S~~alHWLs~~P~~~~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~d~~~fL~~Ra~EL~pGG~mvl~~  189 (332)
                      +|++|||++++                  +|+||-|+-+..+..  -.+    .+...+..+++.-.+-|+|||.+++..
T Consensus        19 lpd~sVdliit------------------dPPY~~~~~~~d~~~--~~~----~y~~~~~~~~~e~~rvLk~~g~~~~~~   74 (256)
T d1g60a_          19 VENKSVQLAVI------------------DPPYNLSKADWDSFD--SHN----EFLAFTYRWIDKVLDKLDKDGSLYIFN   74 (256)
T ss_dssp             SCTTCEEEEEE------------------CCCCSSCSSGGGCCS--SHH----HHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CcCCCcCEEEE------------------CCCCCCCcCcCcCCC--CHH----HHHHHHHHHHHHhhhccccCccccccc
Confidence            47889999998                  355555543332221  012    233344556666677899999887654

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=84.79  E-value=0.85  Score=38.66  Aligned_cols=49  Identities=18%  Similarity=0.242  Sum_probs=34.9

Q ss_pred             CCceEEEeecCCCCcchHHHH------------HHHHHHHHHhhhhcCCCCCCCceEEEecCCCCCc
Q 044174           28 SNIIRLADLGCAVGSNTINAM------------QDVLEVIKNKCHSQCPSSKLPEFQVFFNDKTSND   82 (332)
Q Consensus        28 ~~~~~iaD~GCs~G~ns~~~~------------~~ii~~i~~~~~~~~~~~~~~~~~v~~nDlp~ND   82 (332)
                      .+.-+|+++|||.|.-|..++            ...++.+++++..      .+.+.++..|.=.-|
T Consensus        20 ~~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~l~~~l~~~~~~------~~n~~i~~~D~l~~~   80 (235)
T d1qama_          20 NEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVD------HDNFQVLNKDILQFK   80 (235)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTT------CCSEEEECCCGGGCC
T ss_pred             CCCCeEEEECCCchHHHHHHHhCcCceEEEeeccchHHHHHHHhhc------ccchhhhhhhhhhcc
Confidence            456789999999999999987            3455666655422      356888887765444

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=84.25  E-value=2.9  Score=33.40  Aligned_cols=35  Identities=14%  Similarity=0.047  Sum_probs=24.0

Q ss_pred             HHHHHHHHhhhhcccCCCCCceEEEeecCCCCcchHHHHH
Q 044174           10 KIVDAITRNLNVCELSSASNIIRLADLGCAVGSNTINAMQ   49 (332)
Q Consensus        10 ~l~~ai~~~~~~~~~~~~~~~~~iaD~GCs~G~ns~~~~~   49 (332)
                      .+.|||=..+...     -...+|+|+-||+|.-++..++
T Consensus        29 ~vrealFn~l~~~-----~~~~~vLDlFaGsG~~glEalS   63 (183)
T d2ifta1          29 RVKETLFNWLMPY-----IHQSECLDGFAGSGSLGFEALS   63 (183)
T ss_dssp             HHHHHHHHHHHHH-----HTTCEEEETTCTTCHHHHHHHH
T ss_pred             HHHHHHHHHhhhh-----cccceEeecccCccceeeeeee
Confidence            4556665554322     1235899999999999998873

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=83.87  E-value=1.1  Score=37.62  Aligned_cols=25  Identities=12%  Similarity=0.116  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHhhccCCeEEEEeccc
Q 044174          168 MENFLNARAEEIVSGGMMVIIMPGI  192 (332)
Q Consensus       168 ~~~fL~~Ra~EL~pGG~mvl~~~gr  192 (332)
                      +..+++.-.+-|+|||.+++.....
T Consensus        50 ~~~~~~e~~rvLk~~G~~~~~~~~~   74 (279)
T d1eg2a_          50 AKRWLAEAERVLSPTGSIAIFGGLQ   74 (279)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEECSC
T ss_pred             HHHHHHHHHHHhCCCccEEEecCcc
Confidence            3444555556789999999976543

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=80.55  E-value=6.3  Score=35.54  Aligned_cols=22  Identities=27%  Similarity=0.572  Sum_probs=18.7

Q ss_pred             HHHHHHHHhhccCCeEEEEecc
Q 044174          170 NFLNARAEEIVSGGMMVIIMPG  191 (332)
Q Consensus       170 ~fL~~Ra~EL~pGG~mvl~~~g  191 (332)
                      .|+..-.+-|++||++++.++.
T Consensus       279 ~Fi~~~~~~Lk~~G~~~iI~p~  300 (425)
T d2okca1         279 NFLQHMMLMLKTGGRAAVVLPD  300 (425)
T ss_dssp             HHHHHHHHHEEEEEEEEEEEEH
T ss_pred             HHHHHHHHhcCCCCeEEEEech
Confidence            3777778889999999999974