Citrus Sinensis ID: 044176

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360--
Protein Sequence
LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFARPDLYTNA
Secondary Structure (PSIPRED)
cccccccccccHHHHHccccccEEEccccccccccccccccccEEEccccccEEccccccccccEEEcccccccccccccccccccccEEEccccccccccccHHHHccccccEEEccccccEEEcccccccccccccEEEcccccccccccHHHHHcccccEEEcccccccccccHHccccccccEEEccccccEEEccccccccccccccEEEcccccccccccHHHHHHHHHccccccccccccccccccccEEEEEEEEEcccEEEcccccccEEEEEcccccccccccHHHHccccccccccccccccccccHHHHccccccEEccccccccccccHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHHcccccEEEccccccccccccccccccEEEccccccccccccccccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHcccccccEEEccccEEEEEccHHHHHccccccEEEcccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEEcccccccccccHHccccccccEEEEcccccccccccHHHHHHHHHHHHEEccccccccccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHccccccHHEEEccccccc
Coil and Loop (DISEMBL)
lsnnrirgrisksdsqRWKSLTYLDISNNFLTqieqhpwknitvlnlqnntiqgtilvpppstraflfsnnklfgqippsiyslSSLEYISLshnnlsgtippclgnfstqLTILHLNNnylqgripdafangscdlrslglnsnklrgsfpryladctglevvnvgnnmigdtfpswlgslpglkilvlrsnrfygplcevnimlpFEALRIIDLshneftgflpRWIFVSLETMknvdekgsdglymqgeedyyqdsvtvtvKGRDLVLKRIITIFTTidlssnqfqgeipqvlGDFKSLIVLNLshngltgsipvSFANMIVLESLdlssnklhgripeqfvdaeicssfarpdlytna
Flexible Loop (DISEMBL)
lsnnrirgrisksdsqrwkSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFttidlssnqfQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQfvdaeicssfarpdlytna
Low Complexity Region (SEG)
LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQippsiyslssleyislsHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFARPDLYTNA
Disordered region (IsUnstruct)
*****************WKSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFA********
Disordered Region (DISOPRED)
LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKN********LYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFARPDLYTN*
Disordered Region (DISEMBL)
LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFARPDLYTNA
Disordered Region (DISPRO)
**NNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFARPDL****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFARPDLYTNA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	362	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.944	0.403	0.396	7e-57
O22476	1196	Protein BRASSINOSTEROID I	no	no	0.911	0.275	0.296	1e-28
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.779	0.269	0.322	1e-27
Q42371	976	LRR receptor-like serine/	no	no	0.806	0.299	0.325	3e-27
Q9FL28	1173	LRR receptor-like serine/	no	no	0.953	0.294	0.294	3e-27
O82318	960	Probably inactive leucine	no	no	0.914	0.344	0.308	2e-26
Q9FZ59	1088	Leucine-rich repeat recep	no	no	0.922	0.306	0.334	2e-26
C0LGJ1	1106	Probable LRR receptor-lik	no	no	0.881	0.288	0.303	4e-26
Q9ZPS9	1143	Serine/threonine-protein	no	no	0.933	0.295	0.309	4e-26
Q9FN37	1036	Phytosulfokine receptor 2	no	no	0.850	0.297	0.325	4e-26

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  221 bits (563), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 148/373 (39%), Positives = 207/373 (55%), Gaps = 31/373 (8%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDIS-NNFLTQIEQHPWK--NITVLNLQNNTIQG--- 54
           L  NR+ G I +S S R  +L  LDIS NNF   I     K  N+  L+L  N ++G   
Sbjct: 358 LGRNRLHGPIPESIS-RLLNLEELDISHNNFTGAIPPTISKLVNLLHLDLSKNNLEGEVP 416

Query: 55  -------TILVPPPSTRAFL-------------FSNNKLFGQIPPSIYSLSSLEYISLSH 94
                  T+++   S  +F               ++N   G IP  I  LSSL ++ LS+
Sbjct: 417 ACLWRLNTMVLSHNSFSSFENTSQEEALIEELDLNSNSFQGPIPYMICKLSSLGFLDLSN 476

Query: 95  NNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRY 154
           N  SG+IP C+ NFS  +  L+L +N   G +PD F+  + +L SL ++ N+L G FP+ 
Sbjct: 477 NLFSGSIPSCIRNFSGSIKELNLGDNNFSGTLPDIFSKAT-ELVSLDVSHNQLEGKFPKS 535

Query: 155 LADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRII 214
           L +C  LE+VNV +N I D FPSWL SLP L +L LRSN+FYGPL   +  + F++LRII
Sbjct: 536 LINCKALELVNVESNKIKDIFPSWLESLPSLHVLNLRSNKFYGPLYHRHASIGFQSLRII 595

Query: 215 DLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGL--YMQGEEDYYQDSVTVTVKGRDLVLK 272
           D+SHN F+G LP + F + + M  + E+    +  + +  + YY +   V  KG D+  +
Sbjct: 596 DISHNNFSGTLPPYYFSNWKDMTTLTEEMDQYMTEFWRYADSYYHEMEMVN-KGVDMSFE 654

Query: 273 RIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLS 332
           RI   F  ID S N+  G IP+ LG  K L VLNLS N  T  IP   AN+  LE+LD+S
Sbjct: 655 RIRRDFRAIDFSGNKINGNIPESLGYLKELRVLNLSGNAFTSVIPRFLANLTKLETLDIS 714

Query: 333 SNKLHGRIPEQFV 345
            NKL G+IP+   
Sbjct: 715 RNKLSGQIPQDLA 727

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|O22476|BRI1_ARATH Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana GN=BRI1 PE=1 SV=1

 Score =  127 bits (320), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 114/384 (29%), Positives = 171/384 (44%), Gaps = 54/384 (14%)

Query: 4   NRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPWKNITV----LNLQNNTIQGTILV- 58
           N   G +      + + L  LD+S N  +        N++     L+L +N   G IL  
Sbjct: 350 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 409

Query: 59  ----PPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTI 114
               P  + +     NN   G+IPP++ + S L  + LS N LSGTIP  LG+ S +L  
Sbjct: 410 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS-KLRD 468

Query: 115 LHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDT 174
           L L  N L+G IP         L +L L+ N L G  P  L++CT L  +++ NN +   
Sbjct: 469 LKLWLNMLEGEIPQELMYVKT-LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 527

Query: 175 FPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFE-----ALRIIDLSHNEFTGFLP--- 226
            P W+G L  L IL L +N F G        +P E     +L  +DL+ N F G +P   
Sbjct: 528 IPKWIGRLENLAILKLSNNSFSG-------NIPAELGDCRSLIWLDLNTNLFNGTIPAAM 580

Query: 227 ---------------RWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVL 271
                          R++++  + MK       + L  QG      + ++   +    + 
Sbjct: 581 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST--RNPCNIT 638

Query: 272 KRIITIFTT-----------IDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSF 320
            R+    T+           +D+S N   G IP+ +G    L +LNL HN ++GSIP   
Sbjct: 639 SRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV 698

Query: 321 ANMIVLESLDLSSNKLHGRIPEQF 344
            ++  L  LDLSSNKL GRIP+  
Sbjct: 699 GDLRGLNILDLSSNKLDGRIPQAM 722

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. Binds brassinolide, and less effectively castasterone, but not 2,3,22,23-O-tetramethylbrassinolide or ecdysone. May be involved in a feedback regulation of brassinosteroid biosynthesis. Phosphorylates BRI1-associated receptor kinase 1 (BAK1), Transthyretin-Like protein (TTL) and SERK1 on 'Ser-299' and 'Thr-462' in vitro. May have a guanylyl cyclase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score =  124 bits (311), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 107/332 (32%), Positives = 147/332 (44%), Gaps = 50/332 (15%)

Query: 40  KNITVLNLQNNTIQGTILVPPP-----STRAFLFSNNKLFGQIPPSIYSLSSLEYISLSH 94
           K + VL+L  N + G+I  PP      S      S NKL G +P S   L++LE++ L  
Sbjct: 310 KTLAVLHLYLNQLNGSI--PPELGEMESMIDLEISENKLTGPVPDSFGKLTALEWLFLRD 367

Query: 95  NNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRY 154
           N LSG IPP + N ST+LT+L L+ N   G +PD    G   L +L L+ N   G  P+ 
Sbjct: 368 NQLSGPIPPGIAN-STELTVLQLDTNNFTGFLPDTICRGG-KLENLTLDDNHFEGPVPKS 425

Query: 155 LADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLC-------------- 200
           L DC  L  V    N          G  P L  + L +N F+G L               
Sbjct: 426 LRDCKSLIRVRFKGNSFSGDISEAFGVYPTLNFIDLSNNNFHGQLSANWEQSQKLVAFIL 485

Query: 201 ---EVNIMLPFE-----ALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGE 252
               +   +P E      L  +DLS N  TG LP       E++ N++      L + G 
Sbjct: 486 SNNSITGAIPPEIWNMTQLSQLDLSSNRITGELP-------ESISNINRISK--LQLNGN 536

Query: 253 EDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGL 312
                      + G+     R++T    +DLSSN+F  EIP  L +   L  +NLS N L
Sbjct: 537 R----------LSGKIPSGIRLLTNLEYLDLSSNRFSSEIPPTLNNLPRLYYMNLSRNDL 586

Query: 313 TGSIPVSFANMIVLESLDLSSNKLHGRIPEQF 344
             +IP     +  L+ LDLS N+L G I  QF
Sbjct: 587 DQTIPEGLTKLSQLQMLDLSYNQLDGEISSQF 618

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q42371|ERECT_ARATH LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1

 Score =  123 bits (308), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 115/353 (32%), Positives = 155/353 (43%), Gaps = 61/353 (17%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPWKNIT---VLNLQNNTIQGTIL 57
           L  N + G IS  D  +   L Y D+ NN LT        N T   VL+L  N + G I 
Sbjct: 195 LRGNNLVGNISP-DLCQLTGLWYFDVRNNSLTGSIPETIGNCTAFQVLDLSYNQLTGEI- 252

Query: 58  VPPPSTRAFL------FSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQ 111
              P    FL         N+L G+IP  I  + +L  + LS N LSG+IPP LGN  T 
Sbjct: 253 ---PFDIGFLQVATLSLQGNQLSGKIPSVIGLMQALAVLDLSGNLLSGSIPPILGNL-TF 308

Query: 112 LTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMI 171
              L+L++N L G IP    N S  L  L LN N L G  P  L   T L  +NV NN +
Sbjct: 309 TEKLYLHSNKLTGSIPPELGNMS-KLHYLELNDNHLTGHIPPELGKLTDLFDLNVANNDL 367

Query: 172 GDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFV 231
               P  L S   L  L +  N+F G +         E++  ++LS N   G +P    V
Sbjct: 368 EGPIPDHLSSCTNLNSLNVHGNKFSGTIPRA--FQKLESMTYLNLSSNNIKGPIP----V 421

Query: 232 SLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGE 291
            L  + N+D                                       T+DLS+N+  G 
Sbjct: 422 ELSRIGNLD---------------------------------------TLDLSNNKINGI 442

Query: 292 IPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQF 344
           IP  LGD + L+ +NLS N +TG +P  F N+  +  +DLS+N + G IPE+ 
Sbjct: 443 IPSSLGDLEHLLKMNLSRNHITGVVPGDFGNLRSIMEIDLSNNDISGPIPEEL 495

Receptor kinase that, together with ERL1 and ERL2, regulates aerial architecture, including inflorescence (e.g. shoot apical meristem-originating organ shape, elongation of the internode and pedicels, and adaxial-abaxial polarity), and stomatal patterning (e.g. density and clustering), probably by tuning cell division and expansion. Modulates plant transpiration efficiency by controlling stomatal density, leaf photosynthetic capacity, epidermal cell expansion, mesophyll cell proliferation and cell-cell contact. Probable major trait regulating canalization (maintenance of phenotype despite varying environment) in many aspect of the plant physiology (e.g. plant morphology, light-dependent leaves number, branch number, flowering time, phytate and mineral concentrations) by transducing microenvironmental variation into phenotypic differentiation (ecological amplifier). May maintain development integrity in heat stress conditions. Regulates cell wall composition and structure. Confers resistance to the pathogenic bacteria Ralstonia solanacearum and to the necrotrophic fungi Plectosphaerella cucumerina and Pythium irregulare, and required for callose deposition upon infection. Resistance to P.cucumerina seems cell wall-mediated.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  123 bits (308), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 114/387 (29%), Positives = 175/387 (45%), Gaps = 42/387 (10%)

Query: 3   NNRIRGRISKSDSQRWKSLTYLDISNNFLT-QIEQHPWK-NITVLNLQNNTIQGTI---L 57
           +N + G I  S S     L  LD+S+N +T +I +   + N+T +++  N   G I   +
Sbjct: 393 DNLLTGPIPSSISN-CTGLKLLDLSHNQMTGEIPRGFGRMNLTFISIGRNHFTGEIPDDI 451

Query: 58  VPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHL 117
               +      ++N L G + P I  L  L  + +S+N+L+G IP  +GN    L IL+L
Sbjct: 452 FNCSNLETLSVADNNLTGTLKPLIGKLQKLRILQVSYNSLTGPIPREIGNLK-DLNILYL 510

Query: 118 NNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPS 177
           ++N   GRIP   +N +  L+ L + SN L G  P  + D   L V+++ NN      P+
Sbjct: 511 HSNGFTGRIPREMSNLTL-LQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPA 569

Query: 178 WLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMK 237
               L  L  L L+ N+F G +     +     L   D+S N  TG +P  +  SL+ M+
Sbjct: 570 LFSKLESLTYLSLQGNKFNGSIPAS--LKSLSLLNTFDISDNLLTGTIPGELLASLKNMQ 627

Query: 238 -----------NVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITI--------- 277
                          K    L M  E D   +  + ++       K + T+         
Sbjct: 628 LYLNFSNNLLTGTIPKELGKLEMVQEIDLSNNLFSGSIPRSLQACKNVFTLDFSQNNLSG 687

Query: 278 ------------FTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIV 325
                         +++LS N F GEIPQ  G+   L+ L+LS N LTG IP S AN+  
Sbjct: 688 HIPDEVFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESLANLST 747

Query: 326 LESLDLSSNKLHGRIPEQFVDAEICSS 352
           L+ L L+SN L G +PE  V   I +S
Sbjct: 748 LKHLKLASNNLKGHVPESGVFKNINAS 774

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O82318|Y2579_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=1 SV=1

 Score =  120 bits (301), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 121/392 (30%), Positives = 177/392 (45%), Gaps = 61/392 (15%)

Query: 1   LSNNRIRG----RISKSDSQRWKSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTI 56
           L++N++ G     + K  + +W  L Y ++S     QI      ++  L+L  N + G I
Sbjct: 200 LASNQLTGGVPVELGKMKNLKWIYLGYNNLSGEIPYQIGG--LSSLNHLDLVYNNLSGPI 257

Query: 57  LVPPPS-------TRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFS 109
              PPS          FL+ N KL GQIPPSI+SL +L  +  S N+LSG IP  +    
Sbjct: 258 ---PPSLGDLKKLEYMFLYQN-KLSGQIPPSIFSLQNLISLDFSDNSLSGEIPELVAQMQ 313

Query: 110 TQLTILHLNNNYLQGRIPDA----------------FANG-------SCDLRSLGLNSNK 146
           + L ILHL +N L G+IP+                 F+ G         +L  L L++N 
Sbjct: 314 S-LEILHLFSNNLTGKIPEGVTSLPRLKVLQLWSNRFSGGIPANLGKHNNLTVLDLSTNN 372

Query: 147 LRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIML 206
           L G  P  L D   L  + + +N +    P  LG    L+ + L++N F G L       
Sbjct: 373 LTGKLPDTLCDSGHLTKLILFSNSLDSQIPPSLGMCQSLERVRLQNNGFSGKLPRG--FT 430

Query: 207 PFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKG 266
             + +  +DLS+N   G +  W    LE +     K     +     D+   S +  +K 
Sbjct: 431 KLQLVNFLDLSNNNLQGNINTWDMPQLEMLDLSVNK-----FFGELPDF---SRSKRLKK 482

Query: 267 RDLVLKRIITI----------FTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSI 316
            DL   +I  +             +DLS N+  G IP+ L   K+L+ L+LSHN  TG I
Sbjct: 483 LDLSRNKISGVVPQGLMTFPEIMDLDLSENEITGVIPRELSSCKNLVNLDLSHNNFTGEI 542

Query: 317 PVSFANMIVLESLDLSSNKLHGRIPEQFVDAE 348
           P SFA   VL  LDLS N+L G IP+   + E
Sbjct: 543 PSSFAEFQVLSDLDLSCNQLSGEIPKNLGNIE 574

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FZ59|PEPR2_ARATH Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana GN=PEPR2 PE=1 SV=1

 Score =  120 bits (300), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 120/359 (33%), Positives = 169/359 (47%), Gaps = 25/359 (6%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLT---QIEQHPWKNITVLNLQNNTIQGTIL 57
           L+NN++ G +  S     ++L  L +SNN L           K +  L+L  N  QG   
Sbjct: 203 LNNNKLNGSLPAS-LYLLENLGELFVSNNSLGGRLHFGSSNCKKLVSLDLSFNDFQGG-- 259

Query: 58  VPPP-----STRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQL 112
           VPP      S  + +     L G IP S+  L  +  I LS N LSG IP  LGN S+ L
Sbjct: 260 VPPEIGNCSSLHSLVMVKCNLTGTIPSSMGMLRKVSVIDLSDNRLSGNIPQELGNCSS-L 318

Query: 113 TILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIG 172
             L LN+N LQG IP A +     L+SL L  NKL G  P  +     L  + V NN + 
Sbjct: 319 ETLKLNDNQLQGEIPPALSKLK-KLQSLELFFNKLSGEIPIGIWKIQSLTQMLVYNNTLT 377

Query: 173 DTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPF-EALRIIDLSHNEFTGFLPRWIFV 231
              P  +  L  LK L L +N FYG   ++ + L    +L  +DL  N FTG +P  +  
Sbjct: 378 GELPVEVTQLKHLKKLTLFNNGFYG---DIPMSLGLNRSLEEVDLLGNRFTGEIPPHLCH 434

Query: 232 SLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIF------TTIDLSS 285
             +    +   GS+ L+ +      Q      V+  D  L  ++  F      + ++L S
Sbjct: 435 GQKLRLFI--LGSNQLHGKIPASIRQCKTLERVRLEDNKLSGVLPEFPESLSLSYVNLGS 492

Query: 286 NQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQF 344
           N F+G IP+ LG  K+L+ ++LS N LTG IP    N+  L  L+LS N L G +P Q 
Sbjct: 493 NSFEGSIPRSLGSCKNLLTIDLSQNKLTGLIPPELGNLQSLGLLNLSHNYLEGPLPSQL 551

Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGJ1|Y1743_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g74360 OS=Arabidopsis thaliana GN=At1g74360 PE=1 SV=1

 Score =  119 bits (298), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 106/349 (30%), Positives = 161/349 (46%), Gaps = 30/349 (8%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLT-QIEQHPWKNITVLNLQNNTIQGTILVP 59
           LS N I G I   D  R  +L +L++S+N L  ++      N+ VL+L  N I G I   
Sbjct: 118 LSRNTIEGEI-PDDLSRCHNLKHLNLSHNILEGELSLPGLSNLEVLDLSLNRITGDIQSS 176

Query: 60  PP----STRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTIL 115
            P    S      S N   G+I        +L+Y+  S N  SG +    G    +L   
Sbjct: 177 FPLFCNSLVVANLSTNNFTGRIDDIFNGCRNLKYVDFSSNRFSGEVWTGFG----RLVEF 232

Query: 116 HLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTF 175
            + +N+L G I  +   G+C L+ L L+ N   G FP  +++C  L V+N+  N      
Sbjct: 233 SVADNHLSGNISASMFRGNCTLQMLDLSGNAFGGEFPGQVSNCQNLNVLNLWGNKFTGNI 292

Query: 176 PSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLET 235
           P+ +GS+  LK L L +N F   + E   +L    L  +DLS N+F G +   IF     
Sbjct: 293 PAEIGSISSLKGLYLGNNTFSRDIPET--LLNLTNLVFLDLSRNKFGGDIQE-IFGRFTQ 349

Query: 236 MKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQV 295
           +K          Y+    + Y   +  +      +LK  +   + +DL  N F G++P  
Sbjct: 350 VK----------YLVLHANSYVGGINSSN-----ILK--LPNLSRLDLGYNNFSGQLPTE 392

Query: 296 LGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQF 344
           +   +SL  L L++N  +G IP  + NM  L++LDLS NKL G IP  F
Sbjct: 393 ISQIQSLKFLILAYNNFSGDIPQEYGNMPGLQALDLSFNKLTGSIPASF 441

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZPS9|BRL2_ARATH Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL2 PE=1 SV=1

 Score =  119 bits (297), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 117/378 (30%), Positives = 172/378 (45%), Gaps = 40/378 (10%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLT---QIEQHPWKNITVLNLQNNTIQGTIL 57
           LSNN I G    +  + + SL  L +SNN ++          K++ + +  +N   G I 
Sbjct: 308 LSNNNISGPFPNTILRSFGSLQILLLSNNLISGDFPTSISACKSLRIADFSSNRFSGVI- 366

Query: 58  VPP------PSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQ 111
            PP       S       +N + G+IPP+I   S L  I LS N L+GTIPP +GN    
Sbjct: 367 -PPDLCPGAASLEELRLPDNLVTGEIPPAISQCSELRTIDLSLNYLNGTIPPEIGNLQKL 425

Query: 112 LTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMI 171
              +   NN + G IP        +L+ L LN+N+L G  P    +C+ +E V+  +N +
Sbjct: 426 EQFIAWYNN-IAGEIPPEIGKLQ-NLKDLILNNNQLTGEIPPEFFNCSNIEWVSFTSNRL 483

Query: 172 GDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWI-- 229
               P   G L  L +L L +N F G +     +     L  +DL+ N  TG +P  +  
Sbjct: 484 TGEVPKDFGILSRLAVLQLGNNNFTGEIPPE--LGKCTTLVWLDLNTNHLTGEIPPRLGR 541

Query: 230 ---------FVSLETM---KNVDE--KGSDGLY-MQG--EEDYYQDSVTVTVKGRDLVLK 272
                     +S  TM   +NV    KG  GL    G   E   Q     +     +   
Sbjct: 542 QPGSKALSGLLSGNTMAFVRNVGNSCKGVGGLVEFSGIRPERLLQIPSLKSCDFTRMYSG 601

Query: 273 RIITIFTT------IDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVL 326
            I+++FT       +DLS NQ +G+IP  +G+  +L VL LSHN L+G IP +   +  L
Sbjct: 602 PILSLFTRYQTIEYLDLSYNQLRGKIPDEIGEMIALQVLELSHNQLSGEIPFTIGQLKNL 661

Query: 327 ESLDLSSNKLHGRIPEQF 344
              D S N+L G+IPE F
Sbjct: 662 GVFDASDNRLQGQIPESF 679

Receptor with a serine/threonine-protein kinase activity, which may transduce extracellular spatial and temporal signals into downstream cell differentiation responses in provascular and procambial cells. In contrast to BRI1, BRL1 and BRL3, it does not bind brassinolide.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FN37|PSKR2_ARATH Phytosulfokine receptor 2 OS=Arabidopsis thaliana GN=PSKR2 PE=2 SV=1

 Score =  119 bits (297), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 110/338 (32%), Positives = 160/338 (47%), Gaps = 30/338 (8%)

Query: 13  SDSQRWKSLTYLDISNNFLTQIEQHPW-----KNITVLNLQNNTIQGTI---LVPPPSTR 64
           SD   +  L  L++SNN L + E HP        I VL+L  N + G +        S +
Sbjct: 153 SDVGVFPGLVMLNVSNN-LFEGEIHPELCSSSGGIQVLDLSMNRLVGNLDGLYNCSKSIQ 211

Query: 65  AFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQG 124
                +N+L GQ+P  +YS+  LE +SLS N LSG +   L N S   ++L ++ N    
Sbjct: 212 QLHIDSNRLTGQLPDYLYSIRELEQLSLSGNYLSGELSKNLSNLSGLKSLL-ISENRFSD 270

Query: 125 RIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPG 184
            IPD F N +  L  L ++SNK  G FP  L+ C+ L V+++ NN +  +          
Sbjct: 271 VIPDVFGNLT-QLEHLDVSSNKFSGRFPPSLSQCSKLRVLDLRNNSLSGSINLNFTGFTD 329

Query: 185 LKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGS 244
           L +L L SN F GPL +     P   ++I+ L+ NEF G +P       +T KN+     
Sbjct: 330 LCVLDLASNHFSGPLPDSLGHCP--KMKILSLAKNEFRGKIP-------DTFKNLQSLLF 380

Query: 245 DGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIV 304
             L      D + +++ V    R+L         +T+ LS N    EIP  +  F +L +
Sbjct: 381 LSLSNNSFVD-FSETMNVLQHCRNL---------STLILSKNFIGEEIPNNVTGFDNLAI 430

Query: 305 LNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPE 342
           L L + GL G IP    N   LE LDLS N  +G IP 
Sbjct: 431 LALGNCGLRGQIPSWLLNCKKLEVLDLSWNHFYGTIPH 468

Phytosulfokine receptor with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	362
255568090	1014	serine/threonine-protein kinase bri1, pu	0.950	0.339	0.481	6e-86
225455498	980	PREDICTED: receptor-like protein 12-like	0.939	0.346	0.507	3e-83
147793123	951	hypothetical protein VITISV_032542 [Viti	0.939	0.357	0.507	3e-83
224116970	921	predicted protein [Populus trichocarpa]	0.941	0.370	0.501	6e-83
359493479	814	PREDICTED: receptor-like protein 12-like	0.939	0.417	0.498	2e-82
359493539	1001	PREDICTED: receptor-like protein 12-like	0.939	0.339	0.504	9e-82
359493546	985	PREDICTED: LRR receptor-like serine/thre	0.939	0.345	0.495	5e-80
359493544	978	PREDICTED: receptor-like protein 12-like	0.939	0.347	0.495	2e-79
225459979	979	PREDICTED: receptor-like protein 12-like	0.939	0.347	0.492	3e-79
296089526	616	unnamed protein product [Vitis vinifera]	0.914	0.537	0.492	2e-75

>gi|255568090|ref|XP_002525021.1| serine/threonine-protein kinase bri1, putative [Ricinus communis] gi|223535683|gb|EEF37348.1| serine/threonine-protein kinase bri1, putative [Ricinus communis]

 Score =  323 bits (829), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 170/353 (48%), Positives = 238/353 (67%), Gaps = 9/353 (2%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPP 60
           LSNNRI G+ SK  S+ WKSL +L++S NFLT ++QHPW+NI  L+L  N +QG + VPP
Sbjct: 533 LSNNRIHGQFSKQKSEGWKSLQFLNLSGNFLTGLDQHPWQNIDTLDLNFNWLQGQLSVPP 592

Query: 61  PSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNN 120
           PS R F+ SNN+L G+IP  I +L S++ + LS+N  SG IP CLG     L IL L NN
Sbjct: 593 PSIRQFMVSNNRLSGEIPSFICNLGSIQVLDLSNNGFSGLIPKCLGIMMNWLVILDLRNN 652

Query: 121 YLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLG 180
              G+IP+ F N S  L  L L+ N   G  P  L +C+GL +++ GNN I DTFP WL 
Sbjct: 653 NFSGKIPEVFGN-SGSLVYLNLHGNNFEGPLPPSLGNCSGLRILDFGNNNIRDTFPHWLE 711

Query: 181 SLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVD 240
           +LP L+IL+LRSN F+G + + ++  PF +L+I+DLSHN FTGF+P  +  +L+++  VD
Sbjct: 712 ALPNLEILILRSNSFHGEVGDPSVDHPFPSLQILDLSHNHFTGFVPIKLMQNLKSVVYVD 771

Query: 241 EKGS------DGLYMQGEEDYYQDS--VTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEI 292
           +  +      D L++   + +  D+  +++ +KG  + L++I+TI T +D SSN+F+GEI
Sbjct: 772 KDANLPEYVGDKLFVGRYQYFLVDAPLISLIIKGWGVELRKILTILTVVDCSSNEFRGEI 831

Query: 293 PQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFV 345
           P+ +G  KSL+VLN SHN LTG IP+SFAN+  +ESLDLSSNKL G IP Q  
Sbjct: 832 PEEIGMLKSLVVLNFSHNSLTGRIPLSFANLTNMESLDLSSNKLVGEIPSQLT 884

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455498|ref|XP_002264793.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  315 bits (806), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 175/345 (50%), Positives = 227/345 (65%), Gaps = 5/345 (1%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPP 60
           LSNN+I G  S +  +   +L YL++S N ++  E  PWKN+ +L+L +N +QG +  PP
Sbjct: 514 LSNNKISGVWSWNMGK--DTLWYLNLSYNSISGFEMLPWKNVGILDLHSNLLQGALPTPP 571

Query: 61  PSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNN 120
            ST  F   +NKL G I P I  +SS+  + LS NNLSG +P CLGNFS  L++L+L  N
Sbjct: 572 NSTFFFSVFHNKLSGGISPLICKVSSIRVLDLSSNNLSGMLPHCLGNFSKDLSVLNLRRN 631

Query: 121 YLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLG 180
              G IP +F  G+  +R+L  N N+L G  PR L  C  LEV+N+GNN I DTFP WLG
Sbjct: 632 RFHGTIPQSFLKGNV-IRNLDFNDNRLEGLVPRSLIICRKLEVLNLGNNKINDTFPHWLG 690

Query: 181 SLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVD 240
           +LP L++LVLRSN F+G +    +  PF +LRIIDL+HN+F G LP     SL+   NVD
Sbjct: 691 TLPELQVLVLRSNSFHGHIGCSKLKSPFMSLRIIDLAHNDFEGDLPEMYLRSLKVTMNVD 750

Query: 241 EKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFK 300
           E      YM G  +YY+DSV VT+KG ++   +I+  F TIDLSSN+FQGEIPQ +G+  
Sbjct: 751 EDNMTRKYMGG--NYYEDSVMVTIKGLEIEFVKILNAFATIDLSSNKFQGEIPQSIGNLN 808

Query: 301 SLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFV 345
           SL  LNLSHN LTG IP SF N+ +LESLDLSSNKL G IP+Q  
Sbjct: 809 SLRGLNLSHNNLTGHIPSSFGNLKLLESLDLSSNKLIGSIPQQLT 853

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147793123|emb|CAN75335.1| hypothetical protein VITISV_032542 [Vitis vinifera]

 Score =  315 bits (806), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 175/345 (50%), Positives = 227/345 (65%), Gaps = 5/345 (1%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPP 60
           LSNN+I G  S +  +   +L YL++S N ++  E  PWKN+ +L+L +N +QG +  PP
Sbjct: 515 LSNNKISGVWSWNMGK--DTLWYLNLSYNSISGFEMLPWKNVGILDLHSNLLQGALPTPP 572

Query: 61  PSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNN 120
            ST  F   +NKL G I P I  +SS+  + LS NNLSG +P CLGNFS  L++L+L  N
Sbjct: 573 NSTFFFSVFHNKLSGGISPLICKVSSIRVLDLSSNNLSGMLPHCLGNFSKDLSVLNLRRN 632

Query: 121 YLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLG 180
              G IP +F  G+  +R+L  N N+L G  PR L  C  LEV+N+GNN I DTFP WLG
Sbjct: 633 RFHGTIPQSFLKGNV-IRNLDFNDNRLEGLVPRSLIICRKLEVLNLGNNKINDTFPHWLG 691

Query: 181 SLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVD 240
           +LP L++LVLRSN F+G +    +  PF +LRIIDL+HN+F G LP     SL+   NVD
Sbjct: 692 TLPELQVLVLRSNSFHGHIGCSKLKSPFMSLRIIDLAHNDFEGDLPEMYLRSLKVTMNVD 751

Query: 241 EKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFK 300
           E      YM G  +YY+DSV VT+KG ++   +I+  F TIDLSSN+FQGEIPQ +G+  
Sbjct: 752 EDNMTRKYMGG--NYYEDSVMVTIKGLEIEFVKILNAFATIDLSSNKFQGEIPQSIGNLN 809

Query: 301 SLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFV 345
           SL  LNLSHN LTG IP SF N+ +LESLDLSSNKL G IP+Q  
Sbjct: 810 SLRGLNLSHNNLTGHIPSSFGNLKLLESLDLSSNKLIGSIPQQLT 854

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116970|ref|XP_002331797.1| predicted protein [Populus trichocarpa] gi|222874493|gb|EEF11624.1| predicted protein [Populus trichocarpa]

 Score =  313 bits (803), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 174/347 (50%), Positives = 238/347 (68%), Gaps = 6/347 (1%)

Query: 1   LSNNRIRGRISKSDSQR-WKSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVP 59
           LS+NRI G I K  S +  +SL YLD+S+NFLT + + P  ++  L+L +N +Q    + 
Sbjct: 458 LSHNRIHGEIPKWLSAKGMQSLQYLDLSHNFLTIVNELP-PSLQYLDLTSNLLQQPFPIL 516

Query: 60  PPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNN 119
           P S    L +NNKL G+IPP I ++++ + I+LS+N+LSG IP CLGNFST+L++L+L +
Sbjct: 517 PQSMYILLIANNKLTGEIPPWICNITTFQIINLSNNSLSGNIPQCLGNFSTELSVLNLRS 576

Query: 120 NYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWL 179
           N   G IP +F  G+  +RSL LN N+L GS P  LA+C  LEV+++GNN I D+FP WL
Sbjct: 577 NSFHGTIPGSFTEGN-KIRSLDLNGNELEGSLPLSLANCKMLEVLDLGNNYINDSFPLWL 635

Query: 180 GSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNV 239
            +LP L++LVLRSNR +G +     + PF +LRIIDLSHNEF G LP     + + MK V
Sbjct: 636 QTLPKLQVLVLRSNRLHGSIGNPTAISPFSSLRIIDLSHNEFIGLLPTQYIANFQAMKKV 695

Query: 240 D-EKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGD 298
           D E  +   Y+   E YYQDS+ +T+KG ++ ++RI+TIFTTIDLSSN+F+G+IP+ +G 
Sbjct: 696 DGEVKATPKYIG--EIYYQDSIVLTMKGTEIPMERILTIFTTIDLSSNRFEGQIPKEVGL 753

Query: 299 FKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFV 345
             SLIVLN+S N +TG IP S  N+  LESLDLSSN L G IP Q  
Sbjct: 754 LSSLIVLNISRNSVTGQIPSSLGNLTALESLDLSSNGLGGGIPSQLT 800

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493479|ref|XP_003634609.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  311 bits (798), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 172/345 (49%), Positives = 229/345 (66%), Gaps = 5/345 (1%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPP 60
           LSNN+I G+ + +  +   +L  L++S N ++  E  PWK I +L+L++N +QG +  PP
Sbjct: 348 LSNNKISGKWTWNMGK--DTLKSLNLSYNLISGFELLPWKKIQILDLRSNLLQGPLPTPP 405

Query: 61  PSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNN 120
            ST  F  SNNKL G+I PSI  + S+  + LS+NNLSG +P CLGNFS  L++L+L  N
Sbjct: 406 YSTFFFAISNNKLSGEISPSICKVHSIGVLDLSNNNLSGRLPHCLGNFSKDLSVLNLQGN 465

Query: 121 YLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLG 180
              G IP  F  G+  +R+L  N N+L G  PR L  C  LEV+++GNN I DTFP WL 
Sbjct: 466 RFHGTIPQTFLKGNV-IRNLDFNGNQLEGLVPRSLIICRELEVLDLGNNKINDTFPHWLE 524

Query: 181 SLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVD 240
           +LP L++LVLRSN F+G +    I  PF +LRIIDL+ N+F G LP     SL+ + NVD
Sbjct: 525 TLPKLQVLVLRSNSFHGHIGFSKIKSPFMSLRIIDLARNDFEGDLPEMYLRSLKAIMNVD 584

Query: 241 EKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFK 300
           E      YM   + YYQDS+ VT+KG ++ L +I+  FTTIDLSSN+FQGEIP+ +G+  
Sbjct: 585 EGKMTRKYMG--DHYYQDSIMVTIKGLEIELVKILNTFTTIDLSSNKFQGEIPESIGNLN 642

Query: 301 SLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFV 345
           SL  LNLSHN L G IP SF N+ +LESLDLSSNKL GRIP++  
Sbjct: 643 SLRELNLSHNNLVGHIPSSFGNLKLLESLDLSSNKLIGRIPQELT 687

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493539|ref|XP_002267388.2| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  310 bits (793), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 174/345 (50%), Positives = 228/345 (66%), Gaps = 5/345 (1%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPP 60
           LSNN+I G  S +  +   +L YL++S N ++  E  PWKN+ +L+L +N +QG + +PP
Sbjct: 535 LSNNKISGIWSWNMGK--DTLLYLNLSYNIISGFEMLPWKNMHILDLHSNLLQGPLPIPP 592

Query: 61  PSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNN 120
            ST  F  S+NKL G+I P I  +SS+  + LS NNLSG +P CLGNFS  L++L+L  N
Sbjct: 593 NSTFFFSVSHNKLSGEISPLICKVSSMGVLDLSSNNLSGMLPHCLGNFSKDLSVLNLRRN 652

Query: 121 YLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLG 180
              G IP  F  G+  +R+L  N N+L G  PR L     LEV+++GNN I DTFP WL 
Sbjct: 653 RFHGTIPQTFLKGNA-IRNLDFNDNQLEGLVPRSLIIYRKLEVLDLGNNKINDTFPHWLR 711

Query: 181 SLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVD 240
           +LP L++LVLRSN F+G +    I  PF +LRIIDL+HN+F G LP     SL+ + N+D
Sbjct: 712 TLPELQVLVLRSNSFHGHIGFSKIKSPFMSLRIIDLAHNDFEGDLPEMYLRSLKAIMNID 771

Query: 241 EKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFK 300
           E      YM   E YYQDS+TVT KG D+ L +I+  FTT+DLSSN+FQGEIP+ +G+  
Sbjct: 772 EGNMARKYMG--EYYYQDSITVTTKGLDVELVKILNTFTTVDLSSNKFQGEIPKSIGNLN 829

Query: 301 SLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFV 345
           SL  LNLSHN LTG IP SF N+  LESLDLSSN+L G IP+Q  
Sbjct: 830 SLRGLNLSHNNLTGLIPSSFGNLKSLESLDLSSNELIGSIPQQLT 874

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493546|ref|XP_002267585.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera]

 Score =  304 bits (778), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 171/345 (49%), Positives = 224/345 (64%), Gaps = 5/345 (1%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPP 60
           LSNN I G  S +  +   +L YL++S N ++  E  PWKN+ +L+L +N +QG +  PP
Sbjct: 519 LSNNNISGIWSWNMGKN--TLQYLNLSYNLISGFEMLPWKNLYILDLHSNLLQGPLPTPP 576

Query: 61  PSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNN 120
            ST  F  S+NKL G+I       SS+  + LS+NNLSG +P CLGNFS  L++L+L  N
Sbjct: 577 NSTFFFSVSHNKLSGEILSLFCKASSMRILDLSNNNLSGMLPLCLGNFSKYLSVLNLGRN 636

Query: 121 YLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLG 180
              G IP  F  G+  +R+L  N N+L G  PR L  C  LEV+++GNN I DTFP WLG
Sbjct: 637 RFHGIIPQTFLKGNA-IRNLDFNGNQLEGLLPRSLIICRKLEVLDLGNNKINDTFPHWLG 695

Query: 181 SLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVD 240
           +LP L++LVLRSN F+G +    I  PF +LRIIDL++N+F G LP     SL+   NVD
Sbjct: 696 TLPELQVLVLRSNSFHGHIGCSKIKSPFMSLRIIDLAYNDFEGDLPEMYLRSLKATMNVD 755

Query: 241 EKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFK 300
           E      YM   + YYQDSV VT+KG ++   +I+  FTTIDLSSN+FQGEIP+ +G+  
Sbjct: 756 EGNMTRKYMG--DSYYQDSVMVTIKGLEIEFVKILNTFTTIDLSSNKFQGEIPKSIGNLN 813

Query: 301 SLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFV 345
           SL  LNLSHN L G IP SF N+ +LESLDLSSNKL G IP++  
Sbjct: 814 SLRGLNLSHNSLAGHIPSSFKNLKLLESLDLSSNKLIGSIPQELT 858

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493544|ref|XP_002267509.2| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  302 bits (773), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 171/345 (49%), Positives = 223/345 (64%), Gaps = 5/345 (1%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPP 60
            SNN I G  S +  +   +L YL++S N ++  E  PW+N+  L+L +N +QG +   P
Sbjct: 512 FSNNNISGVWSWNMGK--NTLQYLNLSYNSISGFEMLPWENLYTLDLHSNLLQGPLPTLP 569

Query: 61  PSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNN 120
            ST  F  S+NKL G+I   I   SS+    LS+NNLSG +P CLGNFS  L +L+L  N
Sbjct: 570 NSTFFFSVSHNKLSGEISSLICKASSMRIFDLSNNNLSGVLPHCLGNFSKDLFVLNLRRN 629

Query: 121 YLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLG 180
              G IP  F  G+  +R+L  N N+L G  PR L  C  LEV+++GNN I DTFP WLG
Sbjct: 630 QFHGIIPQTFLKGNA-IRNLDFNDNQLEGPVPRSLIICRKLEVLDLGNNKINDTFPHWLG 688

Query: 181 SLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVD 240
           +LP L++LVLRSN F+G +    I  PF +LRIIDL+HN+F G LP     SL+ + N+D
Sbjct: 689 TLPELQVLVLRSNSFHGHIGRSKIKSPFMSLRIIDLAHNDFEGDLPEMYLRSLKAIMNID 748

Query: 241 EKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFK 300
           E      YM GEE YYQDS+ VT+K  ++   +I+  FTTIDLSSN+FQGEIP+ +G+  
Sbjct: 749 EGNMTRKYM-GEE-YYQDSIVVTIKRLEIEFVKILNTFTTIDLSSNKFQGEIPKSIGNLN 806

Query: 301 SLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFV 345
           SL  LNLSHN L G IP SF N+ +LESLDLSSNKL GRIP++  
Sbjct: 807 SLRGLNLSHNNLAGHIPSSFGNLKLLESLDLSSNKLIGRIPQELT 851

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459979|ref|XP_002267546.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  301 bits (772), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 170/345 (49%), Positives = 222/345 (64%), Gaps = 5/345 (1%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPP 60
           LSNN+I G  S +      +L YL++S N ++  +  PWKNI +L+L +N +QG +  PP
Sbjct: 513 LSNNKISGVWSWNMGN--DTLWYLNLSYNSISGFKMLPWKNIGILDLHSNLLQGPLPTPP 570

Query: 61  PSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNN 120
            ST  F  S+NKL G+I   I   SS+E + LS NNLSG +P CLGNFS  L++L+L  N
Sbjct: 571 NSTFFFSVSHNKLSGEISSLICRASSMEILDLSDNNLSGRLPHCLGNFSKYLSVLNLRRN 630

Query: 121 YLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLG 180
              G IP  F  G+  +R L  N N+L G  PR L  C  LEV+++GNN I DTFP WLG
Sbjct: 631 RFHGNIPQTFLKGNA-IRDLDFNDNQLDGLVPRSLIICRKLEVLDLGNNKINDTFPHWLG 689

Query: 181 SLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVD 240
           +L  L++LVLRSN F+G +    I  PF +LRIIDL+HN+F G LP     SL+ + NV+
Sbjct: 690 TLSKLQVLVLRSNSFHGHIRHSKIKSPFMSLRIIDLAHNDFEGDLPELYLRSLKAIMNVN 749

Query: 241 EKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFK 300
           E      YM    +YYQDS+ VT+KG ++   +I+  FTTIDLSSN+FQGEIP+ +G+  
Sbjct: 750 EGNMTRKYMG--NNYYQDSIMVTIKGLEIEFVKILNTFTTIDLSSNKFQGEIPKSIGNLN 807

Query: 301 SLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFV 345
           SL  LNLSHN L G IP    N+  LESLDLSSNKL GRIP++  
Sbjct: 808 SLRGLNLSHNNLGGHIPSPLGNLKSLESLDLSSNKLIGRIPQELT 852

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089526|emb|CBI39345.3| unnamed protein product [Vitis vinifera]

 Score =  289 bits (739), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 172/349 (49%), Positives = 221/349 (63%), Gaps = 18/349 (5%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTIL--- 57
           LS+N   G++  S      +L YLDISNN   Q+E         +NL  N + G+I    
Sbjct: 155 LSSNNFSGQLPPSIGN-LTNLKYLDISNN---QLE-------GAINLSMNQLYGSIPRPL 203

Query: 58  -VPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILH 116
             PP ST  F  SNNKL G+I PSI  + S+  + LS+NNLSG +P CLGNFS  L++L+
Sbjct: 204 PTPPYSTFFFAISNNKLSGEISPSICKVHSIGVLDLSNNNLSGRLPHCLGNFSKDLSVLN 263

Query: 117 LNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFP 176
           L  N   G IP  F  G+  +R+L  N N+L G  PR L  C  LEV+++GNN I DTFP
Sbjct: 264 LQGNRFHGTIPQTFLKGNV-IRNLDFNGNQLEGLVPRSLIICRELEVLDLGNNKINDTFP 322

Query: 177 SWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETM 236
            WL +LP L++LVLRSN F+G +    I  PF +LRIIDL+ N+F G LP     SL+ +
Sbjct: 323 HWLETLPKLQVLVLRSNSFHGHIGFSKIKSPFMSLRIIDLARNDFEGDLPEMYLRSLKAI 382

Query: 237 KNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVL 296
            NVDE      YM   + YYQDS+ VT+KG ++ L +I+  FTTIDLSSN+FQGEIP+ +
Sbjct: 383 MNVDEGKMTRKYMG--DHYYQDSIMVTIKGLEIELVKILNTFTTIDLSSNKFQGEIPESI 440

Query: 297 GDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFV 345
           G+  SL  LNLSHN L G IP SF N+ +LESLDLSSNKL GRIP++  
Sbjct: 441 GNLNSLRELNLSHNNLVGHIPSSFGNLKLLESLDLSSNKLIGRIPQELT 489

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	362
TAIR|locus:2090754	711	RLP43 "receptor like protein 4	0.961	0.489	0.419	7.3e-59
TAIR|locus:2144392	957	RLP53 "receptor like protein 5	0.878	0.332	0.423	2.3e-58
TAIR|locus:2205005	1019	RLP7 "AT1G47890" [Arabidopsis	0.941	0.334	0.385	3.4e-58
TAIR|locus:2085537	894	RLP34 "AT3G11010" [Arabidopsis	0.889	0.360	0.428	2.9e-57
TAIR|locus:2046397	589	RLP22 "receptor like protein 2	0.917	0.563	0.386	4.6e-57
TAIR|locus:2825762	994	RLP6 "AT1G45616" [Arabidopsis	0.933	0.340	0.398	6.1e-57
TAIR|locus:2173777	792	RLP54 "receptor like protein 5	0.928	0.424	0.387	4.2e-56
TAIR|locus:2078112	868	RLP32 "receptor like protein 3	0.872	0.364	0.413	4.8e-56
TAIR|locus:2129246	891	RLP50 "receptor like protein 5	0.875	0.355	0.410	6.2e-56
TAIR|locus:2119535	725	RLP48 "receptor like protein 4	0.886	0.442	0.401	1.1e-55

TAIR|locus:2090754 RLP43 "receptor like protein 43" [Arabidopsis thaliana (taxid:3702)]

 Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
 Identities = 154/367 (41%), Positives = 199/367 (54%)

Query:     1 LSNNRIRGRISKSDSQRWKSLTYLDIS-NNFLTQIEQHPWK--NITVLNLQNNTIQGTIL 57
             L  N   G+I  S       LT LD+S NNF  +I    W   N+  +NL  NT  G   
Sbjct:   248 LCKNNFSGQIP-SFIGNLSQLTRLDLSSNNFFGEIPGWLWTLPNLFYVNLSYNTFIGFQR 306

Query:    58 V--PPPSTRAFLFSNNKLFGQXXXXXXXXXXXXXXXXXHNNLSGTIPPCLGNFSTQLTIL 115
                P PS    L SNN   G+                  NN SG IP C+GN  + L+ L
Sbjct:   307 PNKPEPSMGHLLGSNNNFTGKIPSFICELRSLETLDLSDNNFSGLIPRCMGNLKSNLSHL 366

Query:   116 HLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTF 175
             +L  N L G +P         LRSL +  N+L G  PR L   + LEV+NV +N I DTF
Sbjct:   367 NLRQNNLSGGLPKHIFE---ILRSLDVGHNQLVGKLPRSLRFFSTLEVLNVESNRINDTF 423

Query:   176 PSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLET 235
             P WL SLP L++LVLRSN F+GP+ E +    F  LRIID+SHN F G LP   FV    
Sbjct:   424 PFWLTSLPKLQVLVLRSNAFHGPIHEAS----FLKLRIIDISHNHFNGTLPSDYFVKWSA 479

Query:   236 MKNV--DEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIP 293
             M ++  DE  S+  YM G   YYQDS+ +  KG +  L RI+TI+T +D S N+F+GEIP
Sbjct:   480 MSSLGTDEDRSNANYM-GSV-YYQDSMVLMNKGVESELIRILTIYTALDFSGNKFEGEIP 537

Query:   294 QVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEI--CS 351
             + +G  K L+VLNLS+N  TG IP S   +  LESLD+S NKL+G IP++  +     C 
Sbjct:   538 KSIGLLKELLVLNLSNNAFTGHIPSSMGKLTALESLDVSQNKLYGEIPQEIGNLSFLSCM 597

Query:   352 SFARPDL 358
             +F+   L
Sbjct:   598 NFSHNQL 604

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2144392 RLP53 "receptor like protein 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 605 (218.0 bits), Expect = 2.3e-58, P = 2.3e-58
 Identities = 141/333 (42%), Positives = 193/333 (57%)

Query:    21 LTYLDISNNFLT-QIEQHPWKN--ITVLNLQNNTIQG--TILVPPPSTRAFLFSNNKLFG 75
             L +LDISNN +  Q+    W+   +  +NL NNT+ G      P PS    L SNN   G
Sbjct:   512 LGFLDISNNKIKGQVPDWLWRLPILYYVNLSNNTLIGFQRPSKPEPSLLYLLGSNNNFIG 571

Query:    76 QXXXXXXXXXXXXXXXXXHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSC 135
             +                  NN +G+IP C+G+  + L++L+L  N+L G +P        
Sbjct:   572 KIPSFICGLRSLNTLDLSDNNFNGSIPRCMGHLKSTLSVLNLRQNHLSGGLPKQIFE--- 628

Query:   136 DLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRF 195
              LRSL +  N+L G  PR L+  + LEV+NV +N I DTFP WL SLP L++LVLRSN F
Sbjct:   629 ILRSLDVGHNQLVGKLPRSLSFFSTLEVLNVESNRINDTFPFWLSSLPKLQVLVLRSNAF 688

Query:   196 YGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNV--DEKGSDGLYMQGEE 253
             +GP+ E      F  LRIID+SHN F G LP   FV    M ++  +E  S+  YM G  
Sbjct:   689 HGPIHEAT----FPELRIIDISHNRFNGTLPTEYFVKWSAMSSLGKNEDQSNEKYM-GSG 743

Query:   254 DYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLT 313
              YYQDS+ +  KG  + L RI+TI+T +D S N+F+GEIP+ +G  K L+VL+LS+N  +
Sbjct:   744 LYYQDSMVLMNKGVAMELVRILTIYTAVDFSGNRFEGEIPKSIGLLKELLVLSLSNNAFS 803

Query:   314 GSIPVSFANMIVLESLDLSSNKLHGRIPEQFVD 346
             G +P S  N+  LESLD+S NKL G IP++  D
Sbjct:   804 GHMPSSMGNLTALESLDVSKNKLTGEIPQELGD 836

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2205005 RLP7 "AT1G47890" [Arabidopsis thaliana (taxid:3702)]

 Score = 605 (218.0 bits), Expect = 3.4e-58, P = 3.4e-58
 Identities = 136/353 (38%), Positives = 200/353 (56%)

Query:     1 LSNNRIRGRISKSDSQRWKSLTYLDISNNFLT----QIEQHPWKNITVLNLQNNTIQGTI 56
             LSNN+I+G++      R  +L  +D+SNN L+     ++  P   +T ++L +N  QG +
Sbjct:   548 LSNNKIKGQVPDW-LWRMPTLNSVDLSNNSLSGFHVSVKASPESQLTSVDLSSNAFQGPL 606

Query:    57 LVPPPSTRAFLFSNNKLFGQXXXXXXXXXXXXXXXXXHNNLSGTIPPCLGNFSTQLTILH 116
              +P  S R F  SNN   G+                 +NNL+G++P CL    + L+ L 
Sbjct:   607 FLPSKSLRYFSGSNNNFTGKIPRSICGLSSLEILDLSNNNLNGSLPWCLETLMSSLSDLD 666

Query:   117 LNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFP 176
             L NN L G +P+ F N +  LRSL ++ N++ G  P  L  C+ LEV+NVG+N I D FP
Sbjct:   667 LRNNSLSGSLPEIFMNAT-KLRSLDVSHNRMEGKLPGSLTGCSSLEVLNVGSNRINDMFP 725

Query:   177 SWLGSLPGLKILVLRSNRFYGPLCEVN-IMLPFEALRIIDLSHNEFTGFLPRWIFVSLET 235
               L SL  L++LVL SN+F+G L  V+ +   F  L+IID+SHN+F G LP   F++   
Sbjct:   726 FELNSLQKLQVLVLHSNKFHGTLHNVDGVWFGFPQLQIIDVSHNDFFGILPSDYFMNWTA 785

Query:   236 MKNVDEKGSDGLYMQGEEDY-----YQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQG 290
             M +  +   +  Y+Q    Y     Y  S+ +  KG  + ++R++TI+T IDLS NQ  G
Sbjct:   786 MSSKKDNNIEPEYIQNPSVYGSSLGYYTSLVLMSKGVSMEMERVLTIYTAIDLSGNQLHG 845

Query:   291 EIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQ 343
             +IP  +G  K L +LN+S NG TG IP S AN+  LESLD+S N + G IP +
Sbjct:   846 KIPDSIGLLKELRILNMSSNGFTGHIPSSLANLKNLESLDISQNNISGEIPPE 898

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2085537 RLP34 "AT3G11010" [Arabidopsis thaliana (taxid:3702)]

 Score = 593 (213.8 bits), Expect = 2.9e-57, P = 2.9e-57
 Identities = 145/338 (42%), Positives = 189/338 (55%)

Query:    21 LTYLDISNNFLT-QIEQHPWK--NITVLNLQNNTIQG--TILVPPPSTRAFLFSNNKLFG 75
             L +LD+SNN +  Q+    W   N+  LNL NNT  G      P PS    L SNN   G
Sbjct:   450 LGFLDVSNNKIKGQVPGWLWTLPNLFYLNLSNNTFIGFQRPTKPEPSMAYLLGSNNNFTG 509

Query:    76 QXXXXXXXXXXXXXXXXXHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSC 135
             +                  NN SG+IP C+ N  + L+ L+L  N L G  P+       
Sbjct:   510 KIPSFICELRSLYTLDLSDNNFSGSIPRCMENLKSNLSELNLRQNNLSGGFPEHIFES-- 567

Query:   136 DLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRF 195
              LRSL +  N+L G  PR L   + LEV+NV +N I D FP WL SL  L++LVLRSN F
Sbjct:   568 -LRSLDVGHNQLVGKLPRSLRFFSNLEVLNVESNRINDMFPFWLSSLQKLQVLVLRSNAF 626

Query:   196 YGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVD--EKGSDGLYMQGEE 253
             +GP   +N  L F  LRIID+SHN F G LP   FV    M ++   E GS+  Y+ G  
Sbjct:   627 HGP---INQAL-FPKLRIIDISHNHFNGSLPTEYFVEWSRMSSLGTYEDGSNVNYL-GS- 680

Query:   254 DYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLT 313
              YYQDS+ +  KG +  L RI+TI+T +D S N+F+GEIP+ +G  K L VLNLS+N  T
Sbjct:   681 GYYQDSMVLMNKGVESELVRILTIYTAVDFSGNKFEGEIPKSIGLLKELHVLNLSNNAFT 740

Query:   314 GSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICS 351
             G IP S  N+  LESLD+S NKL+G IP++  +  + S
Sbjct:   741 GHIPSSIGNLTALESLDVSQNKLYGEIPQEIGNLSLLS 778

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2046397 RLP22 "receptor like protein 22" [Arabidopsis thaliana (taxid:3702)]

 Score = 587 (211.7 bits), Expect = 4.6e-57, P = 4.6e-57
 Identities = 138/357 (38%), Positives = 203/357 (56%)

Query:     1 LSNNRIRGRISKSDSQRWKS--LTYLDISNNFLTQIE---QHPWKN--ITVLNLQNNTIQ 53
             LS+NRI+G +       W    L  LD+SNN  T       H   N  + VL++  N+ +
Sbjct:   129 LSSNRIKGNVP---DWIWSLPLLVSLDLSNNSFTGFNGSLDHVLANSSVQVLDIALNSFK 185

Query:    54 GTILVPPPSTRAFLFSNNKLFGQXXXXXXXXXXXXXXXXXHNNLSGTIPPCLGNFSTQLT 113
             G+   PP S       NN   G                  +NN +G+IPPC+GNF    T
Sbjct:   186 GSFPNPPVSIINLSAWNNSFTGDIPLSVCNRTSLDVLDLSYNNFTGSIPPCMGNF----T 241

Query:   114 ILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGD 173
             I++L  N L+G IPD F +G+   ++L +  N+L G  PR L +C+ +  ++V +N I D
Sbjct:   242 IVNLRKNKLEGNIPDEFYSGALT-QTLDVGYNQLTGELPRSLLNCSFIRFLSVDHNRIND 300

Query:   174 TFPSWLGSLPGLKILVLRSNRFYGPLC--EVNIMLPFEALRIIDLSHNEFTGFLPRWIFV 231
             +FP WL +LP LK+L LRSN F+GP+   +    L F  L+I+++SHN FTG LP   F 
Sbjct:   301 SFPLWLKALPNLKVLTLRSNSFHGPMSPPDDQSSLAFPKLQILEISHNRFTGSLPTNYFA 360

Query:   232 --SLETMKNVDEKGSDGLYM---QGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSN 286
               S++++K  DE   + LYM     +   Y+D++ +  KG  +   +++T ++ ID S N
Sbjct:   361 NWSVKSLKMYDE---ERLYMGDYSSDRFVYEDTLDLQYKGLYMEQGKVLTFYSAIDFSGN 417

Query:   287 QFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQ 343
             + +GEIP+ +G  K+LI LNLS+N  TG IP+SFAN+  LESLDLS NKL G IP++
Sbjct:   418 KLEGEIPESIGLLKTLIALNLSNNSFTGHIPMSFANVTELESLDLSGNKLSGEIPQE 474

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2825762 RLP6 "AT1G45616" [Arabidopsis thaliana (taxid:3702)]

 Score = 593 (213.8 bits), Expect = 6.1e-57, P = 6.1e-57
 Identities = 139/349 (39%), Positives = 195/349 (55%)

Query:     1 LSNNRIRGRISKSDSQRWKSLTYLDISNNFLT----QIEQHPWKNITVLNLQNNTIQGTI 56
             LSNN I+G++      R   L+ +D+SNN L      ++      I +L+L +N  QG +
Sbjct:   528 LSNNNIKGQVPNW-LWRLPELSTVDLSNNSLIGFNGSLKALSGSKIVMLDLSSNAFQGPL 586

Query:    57 LVPPPSTRAFLFSNNKLFGQXXXXXXXXXXXXXXXXXHNNLSGTIPPCLGNFSTQLTILH 116
              +PP   + FL S N   G                  +NNL G IP CL    + L++L+
Sbjct:   587 FMPPRGIQYFLGSYNNFTGYIPPSICGLANPLILDLSNNNLHGLIPRCLEAQMSSLSVLN 646

Query:   117 LNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFP 176
             L NN L G +P+ F N    L SL ++ N L G  P  LA C+ LE++NV +N I DTFP
Sbjct:   647 LRNNSLDGSLPNIFMNAKV-LSSLDVSHNTLEGKLPASLAGCSALEILNVESNNINDTFP 705

Query:   177 SWLGSLPGLKILVLRSNRFYGPLCEVN-IMLPFEALRIIDLSHNEFTGFLPRWIFVSLET 235
              WL SLP L++LVLRSN F G L  V+ +   F  LRI D+SHN+F G LP   F++   
Sbjct:   706 FWLNSLPKLQVLVLRSNNFRGTLHNVDGVWFGFPLLRITDVSHNDFVGTLPSDYFMNWTA 765

Query:   236 MKNVDEKGSDGLYMQGEEDY-YQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQ 294
                + +  ++  Y+   EDY Y  S+ +  KG  + ++RI+T +T ID + N+ QG+IP+
Sbjct:   766 ---ISKSETELQYIGDPEDYGYYTSLVLMNKGVSMEMQRILTKYTVIDFAGNKIQGKIPE 822

Query:   295 VLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQ 343
              +G  K L VLNLS N  TG IP S AN+  LESLD+S NK+ G IP +
Sbjct:   823 SVGILKELHVLNLSSNAFTGHIPSSLANLTNLESLDISQNKIGGEIPPE 871

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0016020 "membrane" evidence=IDA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2173777 RLP54 "receptor like protein 54" [Arabidopsis thaliana (taxid:3702)]

 Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
 Identities = 138/356 (38%), Positives = 195/356 (54%)

Query:     1 LSNNRIRGRISKSDSQRWK--SLTYLDISNNFLTQIEQHPW----KNITVLNLQNNTIQG 54
             +SNNRI+G++ +     W   S+ ++++S N    +E  P      +I+ L+L +N  +G
Sbjct:   333 ISNNRIKGKVPEL---LWTLPSMLHVNLSRNSFDSLEGTPKIILNSSISELDLSSNAFKG 389

Query:    55 TILVPPPSTRAFLFSNNKLFGQXXXXXXXXXXXXXXXXXHNNLSGTIPPCLGNFSTQLTI 114
             +  + PP       SNN   G                  +NN SGTIP CL N S  L  
Sbjct:   390 SFPIIPPYVNIMAASNNYFTGGIPLIFCKRYRLSLLDLSNNNFSGTIPRCLTNVSLGLEA 449

Query:   115 LHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDT 174
             L L+NN L GR+PD        L  L +  N++ G  PR L +CT L+ +NV  N I DT
Sbjct:   450 LKLSNNSLTGRLPDIEDR----LVLLDVGHNQISGKLPRSLVNCTTLKFLNVEGNHINDT 505

Query:   175 FPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLE 234
             FP WL +L  L+I+VLRSNRF+GP+    + L F ALRIID+S N F G LP+  F +  
Sbjct:   506 FPFWLKALTRLEIIVLRSNRFHGPISSPEVSLSFTALRIIDISRNSFNGSLPQNYFANWS 565

Query:   235 T-MKNVDEKGSDGLYMQGEEDYYQD------SVTVTVKGRDLVLKRIITIFTTIDLSSNQ 287
               + N  +      Y   E   Y+       S+ + +KGR + L +I   +T+ID S N 
Sbjct:   566 APLVNTPQGYRWPEYTGDEHSKYETPLWSYPSIHLRIKGRSIELGKIPDTYTSIDFSGNS 625

Query:   288 FQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQ 343
             F+G+IP+ +GD KSLIVL+LS+N  TG IP S A +  LESLDLS N++ G IP++
Sbjct:   626 FEGQIPESIGDLKSLIVLDLSNNSFTGRIPSSLAKLKQLESLDLSQNRISGNIPQE 681

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2078112 RLP32 "receptor like protein 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 581 (209.6 bits), Expect = 4.8e-56, P = 4.8e-56
 Identities = 139/336 (41%), Positives = 186/336 (55%)

Query:    21 LTYLDISNNFLT-QIEQHPWK--NITVLNLQNN--------TIQGTILVPPPSTRAFLFS 69
             +T LDISNN +  Q+    W    +  ++L NN        T  G  L+  PS +  + S
Sbjct:   415 MTNLDISNNKIKGQVPGWLWTLPKLIFVDLSNNIFTGFERSTEHGLSLITKPSMQYLVGS 474

Query:    70 NNKLFGQXXXXXXXXXXXXXXXXXHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDA 129
             NN   G+                  NNL+G+IPPC+GN  + L+ L+L  N L G +P +
Sbjct:   475 NNNFTGKIPSFICALRSLITLDLSDNNLNGSIPPCMGNLKSTLSFLNLRQNRLGGGLPRS 534

Query:   130 FANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILV 189
                    LRSL +  N+L G  PR     + LEV+NV NN I DTFP WL SL  L++LV
Sbjct:   535 IFKS---LRSLDVGHNQLVGKLPRSFIRLSALEVLNVENNRINDTFPFWLSSLKKLQVLV 591

Query:   190 LRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNV--DEKGSDGL 247
             LRSN F+GP+   +    F  LRII+LSHN+F+G LP   FV+   M ++   E  S   
Sbjct:   592 LRSNAFHGPIHHAS----FHTLRIINLSHNQFSGTLPANYFVNWNAMSSLMATEDRSQEK 647

Query:   248 YMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNL 307
             YM     YY DSV +  KG ++ L RI+ I+T +D S N+ +GEIP+ +G  K L VLNL
Sbjct:   648 YMGDSFRYYHDSVVLMNKGLEMELVRILKIYTALDFSENKLEGEIPRSIGLLKELHVLNL 707

Query:   308 SHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQ 343
             S N  TG IP S  N+  LESLD+S NKL G IP++
Sbjct:   708 SSNAFTGHIPSSMGNLRELESLDVSQNKLSGEIPQE 743

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2129246 RLP50 "receptor like protein 50" [Arabidopsis thaliana (taxid:3702)]

 Score = 581 (209.6 bits), Expect = 6.2e-56, P = 6.2e-56
 Identities = 135/329 (41%), Positives = 192/329 (58%)

Query:    20 SLTYLDISNNFLT-QIEQHPWKNITV--LNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQ 76
             SL +LDIS N +  Q+ +  W+  T+  +N+  N   G + + P    +F+ S+NK  G+
Sbjct:   455 SLYHLDISANQIEGQVPEWLWRLPTLRYVNIAQNAFSGELTMLPNPIYSFIASDNKFSGE 514

Query:    77 XXXXXXXXXXXXXXXXXHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCD 136
                              +NN SG+IPPC    +  L+ILHL NN L G IP+   +G   
Sbjct:   515 IPRAVCEIGTLVLS---NNNFSGSIPPCFEISNKTLSILHLRNNSLSGVIPEESLHGY-- 569

Query:   137 LRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFY 196
             LRSL + SN+L G FP+ L +C+ L+ +NV  N I DTFPSWL SLP L++LVLRSN F+
Sbjct:   570 LRSLDVGSNRLSGQFPKSLINCSYLQFLNVEENRINDTFPSWLKSLPNLQLLVLRSNEFH 629

Query:   197 GPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKN-VDE-KGSDGLYMQGEE- 253
             GP+      L F  LR  D+S N F+G LP   FV    M + VD    + G  + G++ 
Sbjct:   630 GPIFSPGDSLSFSKLRFFDISENRFSGVLPSDYFVGWSVMSSFVDIIDNTPGFTVVGDDQ 689

Query:   254 DYYQDSVTVTVKGRDLVLKRI-ITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGL 312
             + +  SV +T+KG ++ L      I+ TID+S N+ +G+IP+ +G  K LIVLN+S+N  
Sbjct:   690 ESFHKSVVLTIKGLNMELVGSGFEIYKTIDVSGNRLEGDIPESIGILKELIVLNMSNNAF 749

Query:   313 TGSIPVSFANMIVLESLDLSSNKLHGRIP 341
             TG IP S +N+  L+SLDLS N+L G IP
Sbjct:   750 TGHIPPSLSNLSNLQSLDLSQNRLSGSIP 778

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2119535 RLP48 "receptor like protein 48" [Arabidopsis thaliana (taxid:3702)]

 Score = 574 (207.1 bits), Expect = 1.1e-55, P = 1.1e-55
 Identities = 133/331 (40%), Positives = 188/331 (56%)

Query:    20 SLTYLDISNNFLT-QIEQHPWK--NITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQ 76
             SL YLDIS N +  Q+ +  W+   ++ +N+  N+  G + + P S  +F+ S+N+  G+
Sbjct:   295 SLFYLDISANHIEGQVPEWLWRLPTLSFVNIAQNSFSGELPMLPNSIYSFIASDNQFSGE 354

Query:    77 XXXXXXXXXXXXXXXXXHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCD 136
                              +N  SG+IP C  NF T ++ILHL NN L G  P    + +  
Sbjct:   355 IPRTVCELVSLNTLVLSNNKFSGSIPRCFENFKT-ISILHLRNNSLSGVFPKEIISET-- 411

Query:   137 LRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFY 196
             L SL +  N L G  P+ L  CT LE +NV +N I D FP WL SL  L+ILVLRSN FY
Sbjct:   412 LTSLDVGHNWLSGQLPKSLIKCTDLEFLNVEDNRINDKFPFWLRSLSNLQILVLRSNEFY 471

Query:   197 GPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDE--KGSDGLYMQGE-E 253
             GP+  +   L F  LRI D+S N FTG LP   F     M +V +    +  +++ G  +
Sbjct:   472 GPIFSLEDSLSFPKLRIFDISENHFTGVLPSDYFAGWSAMSSVVDIFDTTPQVHILGVFQ 531

Query:   254 DYYQDSVTVTVKGRDLVLKRI-ITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGL 312
              YY +SV +T KG ++ L     TI+ TID+S N+ +G+IP+ +G  K LIVLN+S+N  
Sbjct:   532 GYYHNSVVLTNKGLNMELVGSGFTIYKTIDVSGNRLEGDIPESIGILKELIVLNMSNNAF 591

Query:   313 TGSIPVSFANMIVLESLDLSSNKLHGRIPEQ 343
             TG IP S +N+  L+SLDLS N+L G IP +
Sbjct:   592 TGHIPPSLSNLSNLQSLDLSQNRLSGSIPPE 622

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_scaffold_182000003 hypothetical protein (921 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	362
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-37
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-31
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-31
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-30
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-26
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-16
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-08
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	7e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	4e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	5e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.003
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  143 bits (363), Expect = 1e-37
 Identities = 114/342 (33%), Positives = 160/342 (46%), Gaps = 45/342 (13%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLT-QIEQHPWKNITVLNLQNNTIQGTILVP 59
           L  N++ G I  S     + L  LD+S+N L+ +I +       V+ LQN  I       
Sbjct: 267 LYQNKLSGPIPPSIFS-LQKLISLDLSDNSLSGEIPE------LVIQLQNLEI------- 312

Query: 60  PPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNN 119
                  LFSNN   G+IP ++ SL  L+ + L  N  SG IP  LG     LT+L L+ 
Sbjct: 313 -----LHLFSNN-FTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK-HNNLTVLDLST 365

Query: 120 NYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWL 179
           N L G IP+   + S +L  L L SN L G  P+ L  C  L  V + +N      PS  
Sbjct: 366 NNLTGEIPEGLCS-SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEF 424

Query: 180 GSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNV 239
             LP +  L + +N   G +      +P  +L+++ L+ N+F G LP             
Sbjct: 425 TKLPLVYFLDISNNNLQGRINSRKWDMP--SLQMLSLARNKFFGGLP------------- 469

Query: 240 DEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDF 299
           D  GS  L      D  ++  +  V  +   L  ++ +     LS N+  GEIP  L   
Sbjct: 470 DSFGSKRL---ENLDLSRNQFSGAVPRKLGSLSELMQL----KLSENKLSGEIPDELSSC 522

Query: 300 KSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIP 341
           K L+ L+LSHN L+G IP SF+ M VL  LDLS N+L G IP
Sbjct: 523 KKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIP 564

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  125 bits (316), Expect = 1e-31
 Identities = 98/309 (31%), Positives = 151/309 (48%), Gaps = 39/309 (12%)

Query: 42  ITVLNLQNNTIQGTI---LVPPPSTRAFLFSNNKLFGQIPPSIYSLS-SLEYISLSHNNL 97
           +  ++L    I G I   +   P  +    SNN+L G IP  I++ S SL Y++LS+NN 
Sbjct: 71  VVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNF 130

Query: 98  SGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLAD 157
           +G+IP         L  L L+NN L G IP+   + S  L+ L L  N L G  P  L +
Sbjct: 131 TGSIP---RGSIPNLETLDLSNNMLSGEIPNDIGSFS-SLKVLDLGGNVLVGKIPNSLTN 186

Query: 158 CTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFE-----ALR 212
            T LE + + +N +    P  LG +  LK + L  N   G        +P+E     +L 
Sbjct: 187 LTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGE-------IPYEIGGLTSLN 239

Query: 213 IIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLK 272
            +DL +N  TG +P     SL  +KN+        Y+      YQ+ ++  +      L+
Sbjct: 240 HLDLVYNNLTGPIP----SSLGNLKNLQ-------YLF----LYQNKLSGPIPPSIFSLQ 284

Query: 273 RIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLS 332
           ++I    ++DLS N   GEIP+++   ++L +L+L  N  TG IPV+  ++  L+ L L 
Sbjct: 285 KLI----SLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLW 340

Query: 333 SNKLHGRIP 341
           SNK  G IP
Sbjct: 341 SNKFSGEIP 349

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  124 bits (313), Expect = 4e-31
 Identities = 111/347 (31%), Positives = 156/347 (44%), Gaps = 56/347 (16%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPWKNIT---VLNLQNNTIQGTI- 56
           LSNN + G I  +D   + SL  LD+  N L     +   N+T    L L +N + G I 
Sbjct: 147 LSNNMLSGEIP-NDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIP 205

Query: 57  --LVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTI 114
             L    S +      N L G+IP  I  L+SL ++ L +NNL+G IP  LGN    L  
Sbjct: 206 RELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNL-KNLQY 264

Query: 115 LHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDT 174
           L L  N L G IP +  +    L SL L+ N L G  P  +     LE++++ +N     
Sbjct: 265 LFLYQNKLSGPIPPSIFSLQ-KLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGK 323

Query: 175 FPSWLGSLPGLKILVLRSNRFYGPLCEVNIML-PFEALRIIDLSHNEFTGFLPRWIFVSL 233
            P  L SLP L++L L SN+F G   E+   L     L ++DLS N  TG +P       
Sbjct: 324 IPVALTSLPRLQVLQLWSNKFSG---EIPKNLGKHNNLTVLDLSTNNLTGEIP------- 373

Query: 234 ETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIP 293
                      +GL   G                   L ++I       L SN  +GEIP
Sbjct: 374 -----------EGLCSSGN------------------LFKLI-------LFSNSLEGEIP 397

Query: 294 QVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRI 340
           + LG  +SL  + L  N  +G +P  F  + ++  LD+S+N L GRI
Sbjct: 398 KSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRI 444

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  120 bits (303), Expect = 7e-30
 Identities = 119/370 (32%), Positives = 159/370 (42%), Gaps = 62/370 (16%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLT-QIEQHPWKNITVLNLQNNTIQGTILVP 59
           LSNN++ G I         SL YL++SNN  T  I +    N+  L+L NN + G I   
Sbjct: 100 LSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEI--- 156

Query: 60  PPSTRAFLFS-------NNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQL 112
            P+      S        N L G+IP S+ +L+SLE+++L+ N L G IP  LG   + L
Sbjct: 157 -PNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKS-L 214

Query: 113 TILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIG 172
             ++L  N L G IP     G   L  L L  N L G  P  L +   L+ + +  N + 
Sbjct: 215 KWIYLGYNNLSGEIPYEIG-GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS 273

Query: 173 DTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVS 232
              P  + SL  L  L L  N   G + E+ I L  + L I+ L  N FTG +P      
Sbjct: 274 GPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQL--QNLEILHLFSNNFTGKIP------ 325

Query: 233 LETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEI 292
                                      V +T   R  VL+          L SN+F GEI
Sbjct: 326 ---------------------------VALTSLPRLQVLQ----------LWSNKFSGEI 348

Query: 293 PQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSS 352
           P+ LG   +L VL+LS N LTG IP    +   L  L L SN L G IP+       C S
Sbjct: 349 PKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGA---CRS 405

Query: 353 FARPDLYTNA 362
             R  L  N+
Sbjct: 406 LRRVRLQDNS 415

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  108 bits (271), Expect = 9e-26
 Identities = 88/290 (30%), Positives = 132/290 (45%), Gaps = 53/290 (18%)

Query: 69  SNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPD 128
           S   + G+I  +I+ L  ++ I+LS+N LSG IP  +   S+ L  L+L+NN   G IP 
Sbjct: 77  SGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR 136

Query: 129 AFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKIL 188
                   L +L L++N L G  P  +   + L+V+++G N++    P+ L +L  L+ L
Sbjct: 137 GSIPN---LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFL 193

Query: 189 VLRSNRFYGPL-CEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGL 247
            L SN+  G +  E+  M   ++L+ I L +N  +G +P  I                  
Sbjct: 194 TLASNQLVGQIPRELGQM---KSLKWIYLGYNNLSGEIPYEI------------------ 232

Query: 248 YMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNL 307
                             G        +T    +DL  N   G IP  LG+ K+L  L L
Sbjct: 233 ------------------GG-------LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFL 267

Query: 308 SHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPE---QFVDAEICSSFA 354
             N L+G IP S  ++  L SLDLS N L G IPE   Q  + EI   F+
Sbjct: 268 YQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFS 317

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 81.4 bits (201), Expect = 1e-16
 Identities = 75/264 (28%), Positives = 102/264 (38%), Gaps = 76/264 (28%)

Query: 85  SSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNS 144
           S +  I LS  N+SG I   +       TI +L+NN L G IPD     S  LR L L++
Sbjct: 69  SRVVSIDLSGKNISGKISSAIFRLPYIQTI-NLSNNQLSGPIPDDIFTTSSSLRYLNLSN 127

Query: 145 NKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNI 204
           N   GS PR       LE +++ NNM+    P+ +GS                       
Sbjct: 128 NNFTGSIPRGSIPN--LETLDLSNNMLSGEIPNDIGS----------------------- 162

Query: 205 MLPFEALRIIDLSHNEFTGFLPRWI--FVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTV 262
              F +L+++DL  N   G +P  +    SLE                            
Sbjct: 163 ---FSSLKVLDLGGNVLVGKIPNSLTNLTSLE---------------------------- 191

Query: 263 TVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFAN 322
                          F T  L+SNQ  G+IP+ LG  KSL  + L +N L+G IP     
Sbjct: 192 ---------------FLT--LASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG 234

Query: 323 MIVLESLDLSSNKLHGRIPEQFVD 346
           +  L  LDL  N L G IP    +
Sbjct: 235 LTSLNHLDLVYNNLTGPIPSSLGN 258

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 73.3 bits (180), Expect = 4e-14
 Identities = 76/260 (29%), Positives = 116/260 (44%), Gaps = 44/260 (16%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLT-QIEQH--PWKNITVLNLQNNTIQGTIL 57
           L +N+  G I K +  +  +LT LD+S N LT +I +      N+  L L +N+++G I 
Sbjct: 339 LWSNKFSGEIPK-NLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEI- 396

Query: 58  VPPPSTRA-----------------------------FL-FSNNKLFGQIPPSIYSLSSL 87
             P S  A                             FL  SNN L G+I    + + SL
Sbjct: 397 --PKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSL 454

Query: 88  EYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKL 147
           + +SL+ N   G +P   G  S +L  L L+ N   G +P    + S +L  L L+ NKL
Sbjct: 455 QMLSLARNKFFGGLPDSFG--SKRLENLDLSRNQFSGAVPRKLGSLS-ELMQLKLSENKL 511

Query: 148 RGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIML- 206
            G  P  L+ C  L  +++ +N +    P+    +P L  L L  N+  G   E+   L 
Sbjct: 512 SGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSG---EIPKNLG 568

Query: 207 PFEALRIIDLSHNEFTGFLP 226
             E+L  +++SHN   G LP
Sbjct: 569 NVESLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 72.5 bits (178), Expect = 6e-14
 Identities = 43/115 (37%), Positives = 59/115 (51%), Gaps = 25/115 (21%)

Query: 35  EQHPWKN-------------ITVLNLQNNTIQGTILVPPPSTRAFL-------FSNNKLF 74
           +QHPW               I  L L N  ++G I    P+  + L        S N + 
Sbjct: 400 QQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFI----PNDISKLRHLQSINLSGNSIR 455

Query: 75  GQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDA 129
           G IPPS+ S++SLE + LS+N+ +G+IP  LG   T L IL+LN N L GR+P A
Sbjct: 456 GNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL-TSLRILNLNGNSLSGRVPAA 509

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 62.9 bits (153), Expect = 8e-11
 Identities = 29/62 (46%), Positives = 38/62 (61%)

Query: 280 TIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGR 339
           +I+LS N  +G IP  LG   SL VL+LS+N   GSIP S   +  L  L+L+ N L GR
Sbjct: 446 SINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGR 505

Query: 340 IP 341
           +P
Sbjct: 506 VP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 56.4 bits (136), Expect = 1e-08
 Identities = 24/62 (38%), Positives = 35/62 (56%)

Query: 281 IDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRI 340
           + L +   +G IP  +   + L  +NLS N + G+IP S  ++  LE LDLS N  +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 341 PE 342
           PE
Sbjct: 483 PE 484

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 50.4 bits (120), Expect = 7e-07
 Identities = 59/229 (25%), Positives = 100/229 (43%), Gaps = 37/229 (16%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIE---QHPWKNITVLNLQNNTIQGTIL 57
           L+ NR+R  IS+       +LT LD+ NN +T I         N+  L+L +N I+    
Sbjct: 100 LNLNRLRSNISELLEL--TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE---- 153

Query: 58  VPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHL 117
                              +P  + +L +L+ + LS N+LS  +P  L N  + L  L L
Sbjct: 154 ------------------SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSN-LSNLNNLDL 193

Query: 118 NNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPS 177
           + N +   +P         L  L L++N +       L++   L  + + NN + D  P 
Sbjct: 194 SGNKIS-DLPP-EIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPE 249

Query: 178 WLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLP 226
            +G+L  L+ L L +N+    +  ++ +     LR +DLS N  +  LP
Sbjct: 250 SIGNLSNLETLDLSNNQ----ISSISSLGSLTNLRELDLSGNSLSNALP 294

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.8 bits (119), Expect = 1e-06
 Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 1/83 (1%)

Query: 115 LHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDT 174
           L L+N  L+G IP+  +     L+S+ L+ N +RG+ P  L   T LEV+++  N    +
Sbjct: 423 LGLDNQGLRGFIPNDISKLR-HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 175 FPSWLGSLPGLKILVLRSNRFYG 197
            P  LG L  L+IL L  N   G
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSG 504

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 44.1 bits (105), Expect = 2e-06
 Identities = 22/58 (37%), Positives = 31/58 (53%)

Query: 279 TTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKL 336
            ++DLS+N+             +L VL+LS N LT   P +F+ +  L SLDLS N L
Sbjct: 3   KSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 57/226 (25%), Positives = 88/226 (38%), Gaps = 41/226 (18%)

Query: 21  LTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPS 80
           L  LD+S+N L        +++    L+++++Q   L           +NN L  +    
Sbjct: 83  LQELDLSDNALGPDGCGVLESL----LRSSSLQELKL-----------NNNGLGDRGLRL 127

Query: 81  I-----YSLSSLEYISLSHNNLSGTIPPCLGN---FSTQLTILHLNNNYLQGRIPDAFAN 132
           +         +LE + L  N L G     L      +  L  L+L NN +      A A 
Sbjct: 128 LAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAE 187

Query: 133 G---SCDLRSLGLNSNKLR----GSFPRYLADCTGLEVVNVGNNMIGDT-----FPSWLG 180
           G   +C+L  L LN+N L      +    LA    LEV+N+G+N + D        + L 
Sbjct: 188 GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLS 247

Query: 181 SLPGLKILVLRSNRF----YGPLCEVNIMLPFEALRIIDLSHNEFT 222
               L  L L  N         L EV  +   E+L  +DL  N+F 
Sbjct: 248 PNISLLTLSLSCNDITDDGAKDLAEV--LAEKESLLELDLRGNKFG 291

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.5 bits (113), Expect = 8e-06
 Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 2/87 (2%)

Query: 140 LGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPL 199
           LGL++  LRG  P  ++    L+ +N+  N I    P  LGS+  L++L L  N F G +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 200 CEVNIMLPFEALRIIDLSHNEFTGFLP 226
            E    L   +LRI++L+ N  +G +P
Sbjct: 483 PESLGQL--TSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 45.6 bits (108), Expect = 3e-05
 Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 7/81 (8%)

Query: 45  LNLQNNTIQGTILVPP-----PSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSG 99
           +NL  N+I+G I  PP      S      S N   G IP S+  L+SL  ++L+ N+LSG
Sbjct: 447 INLSGNSIRGNI--PPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSG 504

Query: 100 TIPPCLGNFSTQLTILHLNNN 120
            +P  LG         +  +N
Sbjct: 505 RVPAALGGRLLHRASFNFTDN 525

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 45.2 bits (107), Expect = 4e-05
 Identities = 21/45 (46%), Positives = 28/45 (62%)

Query: 275 ITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVS 319
           IT    +DLS N F G IP+ LG   SL +LNL+ N L+G +P +
Sbjct: 465 ITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAA 509

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 7/109 (6%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQI---EQHPWKNITVLNLQNNTIQGTI- 56
           LS N+  G + +        L  L +S N L+     E    K +  L+L +N + G I 
Sbjct: 482 LSRNQFSGAVPRK-LGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIP 540

Query: 57  --LVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPP 103
                 P       S N+L G+IP ++ ++ SL  +++SHN+L G++P 
Sbjct: 541 ASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589

Length = 968

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 75/327 (22%), Positives = 110/327 (33%), Gaps = 95/327 (29%)

Query: 43  TVLNLQNNTIQ-------GTILVPPPSTRAFLFSNNKLFGQIPPSIYSL-------SSLE 88
            VL L+ NT+         + L P PS +    S N+  G+IP  + SL         L+
Sbjct: 26  QVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNET-GRIPRGLQSLLQGLTKGCGLQ 84

Query: 89  YISLSHNNLSGTIPPCLGNF--STQLTILHLNNNYLQGRIPDAFANG----SCDLRSLGL 142
            + LS N L       L +   S+ L  L LNNN L  R     A G       L  L L
Sbjct: 85  ELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVL 144

Query: 143 NSNKLRGSFPRYLAD----CTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGP 198
             N+L G+    LA        L+ +N+ NN IGD          G++ L          
Sbjct: 145 GRNRLEGASCEALAKALRANRDLKELNLANNGIGD---------AGIRALAE-------- 187

Query: 199 LCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQD 258
                 +     L ++DL++N  T                  ++G+  L           
Sbjct: 188 -----GLKANCNLEVLDLNNNGLT------------------DEGASALAE--------- 215

Query: 259 SVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEI-----PQVLGDFKSLIVLNLSHNGLT 313
                       L  + ++   ++L  N             +L    SL+ L+LS N +T
Sbjct: 216 -----------TLASLKSL-EVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT 263

Query: 314 GSIPVSFA----NMIVLESLDLSSNKL 336
                  A        L  LDL  NK 
Sbjct: 264 DDGAKDLAEVLAEKESLLELDLRGNKF 290

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.4 bits (85), Expect = 0.001
 Identities = 24/82 (29%), Positives = 31/82 (37%), Gaps = 26/82 (31%)

Query: 20 SLTYLDISNNFLTQIEQHP---WKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQ 76
          +L  LD+SNN LT I         N+ VL+L  N +                        
Sbjct: 1  NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTS---------------------- 38

Query: 77 IPP-SIYSLSSLEYISLSHNNL 97
          I P +   L SL  + LS NNL
Sbjct: 39 ISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 39.2 bits (91), Expect = 0.003
 Identities = 48/247 (19%), Positives = 102/247 (41%), Gaps = 21/247 (8%)

Query: 10  ISKSDSQRWKSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTI----QGTILVPPPSTRA 65
              +      +   L++S+N L  +       +  L+L + +      G+  +       
Sbjct: 38  PDSNLESVAVNRLALNLSSNTLL-LLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLP 96

Query: 66  FLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGR 125
            L  N          +  L++L  + L +NN++  IPP +G   + L  L L++N ++  
Sbjct: 97  SLDLNLNRLRSNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-S 154

Query: 126 IPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGL 185
           +P    N   +L++L L+ N L    P+ L++ + L  +++  N I D  P  +  L  L
Sbjct: 155 LPSPLRN-LPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISD-LPPEIELLSAL 211

Query: 186 KILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFL--------PRWIFVSLETMK 237
           + L L +N     +  ++ +   + L  ++LS+N+                + +S   + 
Sbjct: 212 EELDLSNNS---IIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQIS 268

Query: 238 NVDEKGS 244
           ++   GS
Sbjct: 269 SISSLGS 275

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 35.2 bits (82), Expect = 0.003
 Identities = 16/59 (27%), Positives = 26/59 (44%)

Query: 137 LRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRF 195
           L+SL L++N+L             L+V+++  N +    P     LP L+ L L  N  
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	362
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.98
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.94
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.93
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.91
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.89
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.89
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.85
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.85
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.85
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.85
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.84
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.83
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.83
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.83
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.79
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.77
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.73
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.62
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.6
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.42
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.3
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.22
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.16
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.16
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.15
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.12
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.1
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.08
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.07
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.05
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.05
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.05
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.05
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.9
PLN03150	623	hypothetical protein; Provisional	98.87
PLN03150	623	hypothetical protein; Provisional	98.83
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.83
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.82
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.71
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.7
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.55
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.49
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.47
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.4
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.35
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.33
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.31
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.26
KOG4341	483	consensus F-box protein containing LRR [General fu	98.25
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.18
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.1
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.1
KOG4341	483	consensus F-box protein containing LRR [General fu	98.05
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.03
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.02
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.98
PRK15386	426	type III secretion protein GogB; Provisional	97.91
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.91
PRK15386	426	type III secretion protein GogB; Provisional	97.81
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.56
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.44
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.41
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.07
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.85
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.71
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.55
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.53
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.53
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.38
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.31
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.95
KOG4308	478	consensus LRR-containing protein [Function unknown	94.76
KOG4308	478	consensus LRR-containing protein [Function unknown	94.75
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	94.2
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.07
smart00370	26	LRR Leucine-rich repeats, outliers.	92.64
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.64
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	92.61
smart00370	26	LRR Leucine-rich repeats, outliers.	91.84
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.84
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	82.9
KOG0473	326	consensus Leucine-rich repeat protein [Function un	81.24
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	80.84
KOG0473	326	consensus Leucine-rich repeat protein [Function un	80.15

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=3.7e-36  Score=301.51  Aligned_cols=346  Identities=29%  Similarity=0.400  Sum_probs=180.6

Q ss_pred             CCCcccccCCccccccCCCCcEEEcCCCccc-cccc---CCcCCCcEEEccCCcCCCCCCC-CCCCccEEEccCcccccC
Q 044176            2 SNNRIRGRISKSDSQRWKSLTYLDISNNFLT-QIEQ---HPWKNITVLNLQNNTIQGTILV-PPPSTRAFLFSNNKLFGQ   76 (362)
Q Consensus         2 ~~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~-~~~~---~~~~~L~~L~l~~n~~~~~~~~-~~~~L~~L~l~~~~~~~~   76 (362)
                      ++|+++|.+|.. +..+++|+.|++++|+++ .++.   ..+++|++|++++|.+.+..+. .+++|++|++++|.+.+.
T Consensus        77 ~~~~i~~~~~~~-~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~  155 (968)
T PLN00113         77 SGKNISGKISSA-IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGE  155 (968)
T ss_pred             cCCCccccCChH-HhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCccccc
Confidence            455666555443 333466666666666665 2333   1455666666666666544333 256666666666666555


Q ss_pred             CcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhh
Q 044176           77 IPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLA  156 (362)
Q Consensus        77 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  156 (362)
                      .|..++++++|++|++++|.+.+.+|..+..+ ++|++|++++|.+.+..|..+... ++|++|++++|.+.+..|..++
T Consensus       156 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~l~  233 (968)
T PLN00113        156 IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNL-TSLEFLTLASNQLVGQIPRELGQM-KSLKWIYLGYNNLSGEIPYEIG  233 (968)
T ss_pred             CChHHhcCCCCCEEECccCcccccCChhhhhC-cCCCeeeccCCCCcCcCChHHcCc-CCccEEECcCCccCCcCChhHh
Confidence            56666666666666666666555555555555 456666666666555555555443 5566666666665555555556


Q ss_pred             cCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhh
Q 044176          157 DCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETM  236 (362)
Q Consensus       157 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l  236 (362)
                      .+++|+.|++++|.+.+..|..++.+++|++|++++|.+.+..+...  ..+++|++|++++|.+.+..|.. +..+++|
T Consensus       234 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L  310 (968)
T PLN00113        234 GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI--FSLQKLISLDLSDNSLSGEIPEL-VIQLQNL  310 (968)
T ss_pred             cCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhH--hhccCcCEEECcCCeeccCCChh-HcCCCCC
Confidence            66666666666665555555555555566666665555544333322  34455555555555554444433 3344444


Q ss_pred             hhccccCCCccccc-------------------------CCccccccceeeee--cC---cchHhhhhcccccEEeccCc
Q 044176          237 KNVDEKGSDGLYMQ-------------------------GEEDYYQDSVTVTV--KG---RDLVLKRIITIFTTIDLSSN  286 (362)
Q Consensus       237 ~~l~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~--~~---~~~~~~~~~~~L~~L~l~~n  286 (362)
                      +.+++.++......                         ...........+..  ..   ........+++++.|++++|
T Consensus       311 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n  390 (968)
T PLN00113        311 EILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSN  390 (968)
T ss_pred             cEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCC
Confidence            44444443221110                         00000000000000  00   00111112344555555555


Q ss_pred             ccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhcc
Q 044176          287 QFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSF  353 (362)
Q Consensus       287 ~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l  353 (362)
                      .+++..|..+..+++|+.|++++|.+++..|..+..++.|+.|++++|++++.+|..+..+++|+.|
T Consensus       391 ~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  457 (968)
T PLN00113        391 SLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQML  457 (968)
T ss_pred             EecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEE
Confidence            5555555555555666666666666655555666666666666666666666555555555555554

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2.9e-35  Score=295.10  Aligned_cols=352  Identities=30%  Similarity=0.431  Sum_probs=211.9

Q ss_pred             CCCCcccccCCccccccCCCCcEEEcCCCccccccc---CCcCCCcEEEccCCcCCCCCC---CCCCCccEEEccCcccc
Q 044176            1 LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGTIL---VPPPSTRAFLFSNNKLF   74 (362)
Q Consensus         1 L~~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~---~~~~~L~~L~l~~n~~~~~~~---~~~~~L~~L~l~~~~~~   74 (362)
                      |++|++++.+|..+... ++|+.|++++|.++...+   ..+++|+.|++++|.+.+..+   ..+++|+.|++++|.+.
T Consensus       195 L~~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  273 (968)
T PLN00113        195 LASNQLVGQIPRELGQM-KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS  273 (968)
T ss_pred             ccCCCCcCcCChHHcCc-CCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeee
Confidence            35666666666554443 677777777766664333   355666666666666554332   22556666666666665


Q ss_pred             cCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchh
Q 044176           75 GQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRY  154 (362)
Q Consensus        75 ~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  154 (362)
                      +..|..+.++++|++|++++|.+.+.+|..+..+ ++|++|++++|.+.+..|..+... ++|++|++++|.+.+..|..
T Consensus       274 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l-~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~p~~  351 (968)
T PLN00113        274 GPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQL-QNLEILHLFSNNFTGKIPVALTSL-PRLQVLQLWSNKFSGEIPKN  351 (968)
T ss_pred             ccCchhHhhccCcCEEECcCCeeccCCChhHcCC-CCCcEEECCCCccCCcCChhHhcC-CCCCEEECcCCCCcCcCChH
Confidence            5555556666666666666666554555544444 455555555555554444444432 45555555555555444545


Q ss_pred             hhcCCCCcEEEccCCCC------------------------CCCcchhccCCCCCCeEEccCCcCCCccccccccccCCc
Q 044176          155 LADCTGLEVVNVGNNMI------------------------GDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEA  210 (362)
Q Consensus       155 ~~~l~~L~~L~l~~~~~------------------------~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~  210 (362)
                      ++.+++|+.|++++|.+                        .+..|..+..+++|+.|++++|.+.+..+..  +..+++
T Consensus       352 l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~--~~~l~~  429 (968)
T PLN00113        352 LGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSE--FTKLPL  429 (968)
T ss_pred             HhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChh--HhcCCC
Confidence            55555555555554444                        4444444555556666666666555443332  245666


Q ss_pred             ccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccc--eeeeec---CcchHhhhhcccccEEeccC
Q 044176          211 LRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDS--VTVTVK---GRDLVLKRIITIFTTIDLSS  285 (362)
Q Consensus       211 L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~L~~L~l~~  285 (362)
                      |+.+++++|.+.+..+.. +..+++|+.+++.++...............  +.....   .........+++|+.|++++
T Consensus       430 L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~  508 (968)
T PLN00113        430 VYFLDISNNNLQGRINSR-KWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSE  508 (968)
T ss_pred             CCEEECcCCcccCccChh-hccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcC
Confidence            666666666666555443 345666666666666433211110000111  111111   11122234477889999999


Q ss_pred             cccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhccCCCccccC
Q 044176          286 NQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFARPDLYTN  361 (362)
Q Consensus       286 n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~~~~l~~n  361 (362)
                      |.+.+.+|..+..+++|+.|+|++|.+++..|..+..+++|+.|++++|++++.+|..+..++.|+.+   ++++|
T Consensus       509 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l---~ls~N  581 (968)
T PLN00113        509 NKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQV---NISHN  581 (968)
T ss_pred             CcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEE---eccCC
Confidence            99988888888889999999999999998888999999999999999999998889888877777666   56665

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=3.7e-34  Score=250.66  Aligned_cols=331  Identities=22%  Similarity=0.210  Sum_probs=244.7

Q ss_pred             CCCCcccccCCccccccCCCCcEEEcCCCccccccc--C------------------------CcCCCcEEEccCCcCCC
Q 044176            1 LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ--H------------------------PWKNITVLNLQNNTIQG   54 (362)
Q Consensus         1 L~~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~--~------------------------~~~~L~~L~l~~n~~~~   54 (362)
                      +++|++. .+....|..+++|+++.+..|.++.+|.  +                        .++.||.|||+.|.|..
T Consensus        85 lsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~  163 (873)
T KOG4194|consen   85 LSNNKLS-HIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISE  163 (873)
T ss_pred             ccccccc-cCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhc
Confidence            4566666 5555555556666666666666666655  1                        23344555555554443


Q ss_pred             C---CCCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhh
Q 044176           55 T---ILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFA  131 (362)
Q Consensus        55 ~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~  131 (362)
                      .   .+..-+++++|++++|.|+......|.++.+|..|.|+.|+++ .+|...++-.++|+.|++.+|++...-...|.
T Consensus       164 i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFq  242 (873)
T KOG4194|consen  164 IPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQ  242 (873)
T ss_pred             ccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhc
Confidence            2   2223455777777777777666667777777777777777777 67766666336777777777777632233443


Q ss_pred             cCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcc
Q 044176          132 NGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEAL  211 (362)
Q Consensus       132 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L  211 (362)
                       ++++|+.|.+.+|.+.....++|..+.++++|++..|++......++.++++|+.|+++.|.+....++.  +..+++|
T Consensus       243 -gL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~--WsftqkL  319 (873)
T KOG4194|consen  243 -GLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDS--WSFTQKL  319 (873)
T ss_pred             -CchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecch--hhhcccc
Confidence             3477777777777777666778888889999999999887777778888999999999999887655444  4667899


Q ss_pred             cEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCcccCCC
Q 044176          212 RIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGE  291 (362)
Q Consensus       212 ~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  291 (362)
                      ++|++++|.++ ..++..+..+..|+.|.+.++...+                  .....+..+++|+.|||+.|.+...
T Consensus       320 ~~LdLs~N~i~-~l~~~sf~~L~~Le~LnLs~Nsi~~------------------l~e~af~~lssL~~LdLr~N~ls~~  380 (873)
T KOG4194|consen  320 KELDLSSNRIT-RLDEGSFRVLSQLEELNLSHNSIDH------------------LAEGAFVGLSSLHKLDLRSNELSWC  380 (873)
T ss_pred             eeEeccccccc-cCChhHHHHHHHhhhhcccccchHH------------------HHhhHHHHhhhhhhhcCcCCeEEEE
Confidence            99999999999 6777779999999999999885433                  3334445588999999999988543


Q ss_pred             ---cchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhccCCC
Q 044176          292 ---IPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFARP  356 (362)
Q Consensus       292 ---~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~~~  356 (362)
                         ....|.+++.|+.|.+.||++..+...+|.++++|++|||.+|.|-.+-|++|..+ +|+.|.+.
T Consensus       381 IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n  447 (873)
T KOG4194|consen  381 IEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN  447 (873)
T ss_pred             EecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence               35567889999999999999997777899999999999999999999999999998 88877554

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.98  E-value=1.6e-33  Score=246.77  Aligned_cols=336  Identities=20%  Similarity=0.205  Sum_probs=242.8

Q ss_pred             CCCcEEEcCCCccccccc---CCcCCCcEEEccCCcCCCCCCCC--CCCccEEEccCcccccCCcccccCCCCCCEEEcc
Q 044176           19 KSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGTILVP--PPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLS   93 (362)
Q Consensus        19 ~~L~~L~ls~~~i~~~~~---~~~~~L~~L~l~~n~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~   93 (362)
                      +..+.|++++|.+.++..   ..+++|+.+++.+|.++.+.-.+  ..+++.|++.+|.|..+-...+.-++.|+.|||+
T Consensus        78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS  157 (873)
T KOG4194|consen   78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS  157 (873)
T ss_pred             cceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence            457789999999999887   58899999999999988755333  6779999999999998888888889999999999


Q ss_pred             cCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCC
Q 044176           94 HNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGD  173 (362)
Q Consensus        94 ~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  173 (362)
                      .|.++ +++..-+.-..++++|++++|+|+......|... .+|..|.+++|+++...+..|..+++|+.|++..|++..
T Consensus       158 rN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~l-nsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iri  235 (873)
T KOG4194|consen  158 RNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSL-NSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRI  235 (873)
T ss_pred             hchhh-cccCCCCCCCCCceEEeecccccccccccccccc-chheeeecccCcccccCHHHhhhcchhhhhhccccceee
Confidence            99998 7776555544689999999999986555566655 689999999999996666678889999999999999854


Q ss_pred             CcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCc
Q 044176          174 TFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEE  253 (362)
Q Consensus       174 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~  253 (362)
                      .-.-+|..+++|+.|.+..|.+......  +|..+.++++|++..|++..... ...-.++.|+.|+++.+....+....
T Consensus       236 ve~ltFqgL~Sl~nlklqrN~I~kL~DG--~Fy~l~kme~l~L~~N~l~~vn~-g~lfgLt~L~~L~lS~NaI~rih~d~  312 (873)
T KOG4194|consen  236 VEGLTFQGLPSLQNLKLQRNDISKLDDG--AFYGLEKMEHLNLETNRLQAVNE-GWLFGLTSLEQLDLSYNAIQRIHIDS  312 (873)
T ss_pred             ehhhhhcCchhhhhhhhhhcCcccccCc--ceeeecccceeecccchhhhhhc-ccccccchhhhhccchhhhheeecch
Confidence            4456788999999999999988763333  45788899999999999984444 44677889999998887542222110


Q ss_pred             c-c--cccceeee---ecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCcc---CchhhhhcCC
Q 044176          254 D-Y--YQDSVTVT---VKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTG---SIPVSFANMI  324 (362)
Q Consensus       254 ~-~--~~~~~~~~---~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~---~~~~~~~~~~  324 (362)
                      = +  ...++.++   .+......+..+..|+.|.|++|.++..--..|.++++|++|+|.+|.+..   .-...|.+++
T Consensus       313 WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~  392 (873)
T KOG4194|consen  313 WSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLP  392 (873)
T ss_pred             hhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccch
Confidence            0 0  00011111   112222333334555555555555553333445566677777777776652   2344577777


Q ss_pred             CcCEEEccCCcccccCchhhhhhHhhhccCCCccccCC
Q 044176          325 VLESLDLSSNKLHGRIPEQFVDAEICSSFARPDLYTNA  362 (362)
Q Consensus       325 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~~~~l~~n~  362 (362)
                      +|++|++.||++..+...+|.+++.|++|   ||.+|+
T Consensus       393 ~LrkL~l~gNqlk~I~krAfsgl~~LE~L---dL~~Na  427 (873)
T KOG4194|consen  393 SLRKLRLTGNQLKSIPKRAFSGLEALEHL---DLGDNA  427 (873)
T ss_pred             hhhheeecCceeeecchhhhccCccccee---cCCCCc
Confidence            88888888888776555577777777776   666664

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.94  E-value=2.9e-29  Score=222.13  Aligned_cols=347  Identities=23%  Similarity=0.344  Sum_probs=225.8

Q ss_pred             CCCCccc-ccCCccccccCCCCcEEEcCCCccccccc--CCcCCCcEEEccCCcCCCCC--CCCCCCccEEEccCccccc
Q 044176            1 LSNNRIR-GRISKSDSQRWKSLTYLDISNNFLTQIEQ--HPWKNITVLNLQNNTIQGTI--LVPPPSTRAFLFSNNKLFG   75 (362)
Q Consensus         1 L~~n~~~-~~~~~~~~~~~~~L~~L~ls~~~i~~~~~--~~~~~L~~L~l~~n~~~~~~--~~~~~~L~~L~l~~~~~~~   75 (362)
                      ++.|.++ |..|.++-+ |+++++|.+.+.++..+|.  .++.+|+.|.+.+|++....  ...+|.|+.+.+++|+++.
T Consensus        14 fsgNDFsg~~FP~~v~q-Mt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKn   92 (1255)
T KOG0444|consen   14 FSGNDFSGDRFPHDVEQ-MTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKN   92 (1255)
T ss_pred             ccCCcCCCCcCchhHHH-hhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhcccccc
Confidence            4678887 556665555 4999999999999999887  47888888888888876533  4457888888888887763


Q ss_pred             -CCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchh
Q 044176           76 -QIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRY  154 (362)
Q Consensus        76 -~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  154 (362)
                       -+|+.+..+..|..|||++|++. +.|..+... ++.-.|++++|+|. .+|..++..+..|-.|++++|++. ..|..
T Consensus        93 sGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~A-Kn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ  168 (1255)
T KOG0444|consen   93 SGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYA-KNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQ  168 (1255)
T ss_pred             CCCCchhcccccceeeecchhhhh-hcchhhhhh-cCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHH
Confidence             36677778888888888888888 788877766 57778888888887 677766665677778888888776 55666


Q ss_pred             hhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCC-ccccccccccCCcccEEeccCCcccCCCchhHHhhh
Q 044176          155 LADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYG-PLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSL  233 (362)
Q Consensus       155 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~  233 (362)
                      ...+..|+.|++++|.+...-...+..+++|+.|.+++.+-+- ..|..  +..+.+|+.+|++.|++. ..|+. ...+
T Consensus       169 ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pts--ld~l~NL~dvDlS~N~Lp-~vPec-ly~l  244 (1255)
T KOG0444|consen  169 IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTS--LDDLHNLRDVDLSENNLP-IVPEC-LYKL  244 (1255)
T ss_pred             HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCc--hhhhhhhhhccccccCCC-cchHH-Hhhh
Confidence            7777777777777776643322223344444555554443321 11111  133444555555555544 33322 3344


Q ss_pred             hhhhhccccCCCcccccCCccccccceeeeecCcch----HhhhhcccccEEeccCcccCC-CcchhhcCCCCCcEEEcc
Q 044176          234 ETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDL----VLKRIITIFTTIDLSSNQFQG-EIPQVLGDFKSLIVLNLS  308 (362)
Q Consensus       234 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~  308 (362)
                      ++|+.+.++.+...........+.....+..+..+.    ...--+++|+.|.+.+|+++- -+|+.++.+.+|+.++.+
T Consensus       245 ~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aa  324 (1255)
T KOG0444|consen  245 RNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAA  324 (1255)
T ss_pred             hhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhh
Confidence            444444444444333322222211111111111111    111116778888898888863 368888889999999999


Q ss_pred             CCcCccCchhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhccCCCccccC
Q 044176          309 HNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFARPDLYTN  361 (362)
Q Consensus       309 ~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~~~~l~~n  361 (362)
                      +|.+. .+|++++.|++|+.|.|+.|++- ..|+++--++.|..|   |+..|
T Consensus       325 nN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vL---DlreN  372 (1255)
T KOG0444|consen  325 NNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVL---DLREN  372 (1255)
T ss_pred             ccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCccee---eccCC
Confidence            88887 89999999999999999999987 688877666555555   66655

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.93  E-value=3e-27  Score=209.48  Aligned_cols=308  Identities=23%  Similarity=0.309  Sum_probs=231.0

Q ss_pred             CCcccccCCccccccCCCCcEEEcCCCccccccc--CCcCCCcEEEccCCcCCCCCC----CCCCCccEEEccCcccccC
Q 044176            3 NNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ--HPWKNITVLNLQNNTIQGTIL----VPPPSTRAFLFSNNKLFGQ   76 (362)
Q Consensus         3 ~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~--~~~~~L~~L~l~~n~~~~~~~----~~~~~L~~L~l~~~~~~~~   76 (362)
                      ...+. .+|..+... ++|++|.+..|+++.+.+  ..++.||.+++..|++.....    ..+..|+.|++++|++. .
T Consensus        41 rt~L~-~vPeEL~~l-qkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-E  117 (1255)
T KOG0444|consen   41 RTKLE-QVPEELSRL-QKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-E  117 (1255)
T ss_pred             hhhhh-hChHHHHHH-hhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-h
Confidence            34555 788888876 999999999999998887  578999999999998875332    23788899999999998 6


Q ss_pred             CcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccC-------
Q 044176           77 IPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRG-------  149 (362)
Q Consensus        77 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-------  149 (362)
                      .|..+..-+++-+|+|++|+|. .+|..++....-|-.||+++|++. .+|...... ..|++|.+++|++..       
T Consensus       118 vP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL-~~LqtL~Ls~NPL~hfQLrQLP  194 (1255)
T KOG0444|consen  118 VPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRL-SMLQTLKLSNNPLNHFQLRQLP  194 (1255)
T ss_pred             cchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHH-hhhhhhhcCCChhhHHHHhcCc
Confidence            7888888899999999999998 899888776677888999999987 778777765 578888888876542       


Q ss_pred             ------------------CCchhhhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcc
Q 044176          150 ------------------SFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEAL  211 (362)
Q Consensus       150 ------------------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L  211 (362)
                                        .+|..+..+.+|+.+|++.|.+ ..+|+.+.++++|+.|+|++|+++.....   ...+.+|
T Consensus       195 smtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~L-p~vPecly~l~~LrrLNLS~N~iteL~~~---~~~W~~l  270 (1255)
T KOG0444|consen  195 SMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNL-PIVPECLYKLRNLRRLNLSGNKITELNMT---EGEWENL  270 (1255)
T ss_pred             cchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCC-CcchHHHhhhhhhheeccCcCceeeeecc---HHHHhhh
Confidence                              3455555666677777777766 45667777777777777777777653222   1445677


Q ss_pred             cEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCcccCCC
Q 044176          212 RIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGE  291 (362)
Q Consensus       212 ~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  291 (362)
                      ++|+++.|+++ .+|.. ...++.|+.+....+....                .+.+..+ +-+..|+.+...+|++. .
T Consensus       271 EtLNlSrNQLt-~LP~a-vcKL~kL~kLy~n~NkL~F----------------eGiPSGI-GKL~~Levf~aanN~LE-l  330 (1255)
T KOG0444|consen  271 ETLNLSRNQLT-VLPDA-VCKLTKLTKLYANNNKLTF----------------EGIPSGI-GKLIQLEVFHAANNKLE-L  330 (1255)
T ss_pred             hhhccccchhc-cchHH-HhhhHHHHHHHhccCcccc----------------cCCccch-hhhhhhHHHHhhccccc-c
Confidence            77777777776 45544 5566777766655553211                1111111 11566889999999986 8


Q ss_pred             cchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCch
Q 044176          292 IPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPE  342 (362)
Q Consensus       292 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~  342 (362)
                      +|+.++.+.+|+.|.|+.|.+. .+|+++.-++.|+.||+..|.-. .+|+
T Consensus       331 VPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL-VMPP  379 (1255)
T KOG0444|consen  331 VPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL-VMPP  379 (1255)
T ss_pred             CchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc-cCCC
Confidence            8999999999999999999988 79999999999999999999755 4444

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.91  E-value=6.3e-27  Score=196.99  Aligned_cols=344  Identities=24%  Similarity=0.317  Sum_probs=211.5

Q ss_pred             CCCcccccCCccccccCCCCcEEEcCCCccccccc--CCcCCCcEEEccCCcC-----------------------CCCC
Q 044176            2 SNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ--HPWKNITVLNLQNNTI-----------------------QGTI   56 (362)
Q Consensus         2 ~~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~--~~~~~L~~L~l~~n~~-----------------------~~~~   56 (362)
                      ++|++. .+|.+.... +++++++++.|.+..++.  +.+..++.++..+|++                       ....
T Consensus        99 s~n~ls-~lp~~i~s~-~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~  176 (565)
T KOG0472|consen   99 SHNKLS-ELPEQIGSL-ISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALP  176 (565)
T ss_pred             ccchHh-hccHHHhhh-hhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCC
Confidence            455555 566665555 666666666665555554  2344444444444444                       3322


Q ss_pred             CCC--CCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCC
Q 044176           57 LVP--PPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGS  134 (362)
Q Consensus        57 ~~~--~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  134 (362)
                      +..  ++.|++++..+|-+. .+|+.++.+.+|..|++..|++. .+| ++... ..|+++.++.|.+. .+|++..+.+
T Consensus       177 ~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gc-s~L~Elh~g~N~i~-~lpae~~~~L  251 (565)
T KOG0472|consen  177 ENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGC-SLLKELHVGENQIE-MLPAEHLKHL  251 (565)
T ss_pred             HHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCcc-HHHHHHHhcccHHH-hhHHHHhccc
Confidence            222  677788888887776 67778888888888888888888 777 44444 46888888888887 7888888777


Q ss_pred             CCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCc----------------
Q 044176          135 CDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGP----------------  198 (362)
Q Consensus       135 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~----------------  198 (362)
                      +++..|++++|+++ ..|..++-+.+|+.||+++|.+ ...|..++++ .|+.|.+.+|++...                
T Consensus       252 ~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~i-s~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyL  328 (565)
T KOG0472|consen  252 NSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDI-SSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYL  328 (565)
T ss_pred             ccceeeeccccccc-cCchHHHHhhhhhhhcccCCcc-ccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHH
Confidence            89999999999998 6788888899999999999998 4567778888 888888888875310                


Q ss_pred             ---------------------ccc--ccccccCCcccEEeccCCcccCCCchhHHhhhh--hhhhccccCCCcccccCCc
Q 044176          199 ---------------------LCE--VNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLE--TMKNVDEKGSDGLYMQGEE  253 (362)
Q Consensus       199 ---------------------~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~--~l~~l~~~~~~~~~~~~~~  253 (362)
                                           .+.  ......+.+.+.|++++-+++ ..|...|..-.  -...+++..+....++...
T Consensus       329 rs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L  407 (565)
T KOG0472|consen  329 RSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLCELPKRL  407 (565)
T ss_pred             HHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHhhhhhhh
Confidence                                 000  001122345566666666665 33333222221  1233444444444443321


Q ss_pred             cccccc-----eeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCc---------------
Q 044176          254 DYYQDS-----VTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLT---------------  313 (362)
Q Consensus       254 ~~~~~~-----~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~---------------  313 (362)
                      .-....     .+.......+.....+++|+.|++++|.+. .+|..++.+..|+.|+++.|.+.               
T Consensus       408 ~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtl  486 (565)
T KOG0472|consen  408 VELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETL  486 (565)
T ss_pred             HHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccccchHHHhhHHHHHHH
Confidence            111110     001111111222233667777777777665 45556666666777777665443               


Q ss_pred             --------cCchhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhccCCCccccC
Q 044176          314 --------GSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFARPDLYTN  361 (362)
Q Consensus       314 --------~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~~~~l~~n  361 (362)
                              ...+..+..|..|+.||+.+|.+. .+|..++++++|++|   +++||
T Consensus       487 las~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hL---eL~gN  538 (565)
T KOG0472|consen  487 LASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHL---ELDGN  538 (565)
T ss_pred             HhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEE---EecCC
Confidence                    122334666677777777777777 566677777777776   55665

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.89  E-value=3e-22  Score=189.13  Aligned_cols=260  Identities=22%  Similarity=0.318  Sum_probs=143.0

Q ss_pred             CCCcccccCCccccccCCCCcEEEcCCCcccccccCCcCCCcEEEccCCcCCCCCCCCCCCccEEEccCcccccCCcccc
Q 044176            2 SNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSI   81 (362)
Q Consensus         2 ~~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~   81 (362)
                      ++|.++ .+|+.+.   ++|+.|++++|+++.++. ..++|+.|++++|.++.. +..+++|+.|++++|.+.. +|.. 
T Consensus       209 s~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~LP~-lp~~Lk~LdLs~N~LtsL-P~lp~sL~~L~Ls~N~L~~-Lp~l-  280 (788)
T PRK15387        209 GESGLT-TLPDCLP---AHITTLVIPDNNLTSLPA-LPPELRTLEVSGNQLTSL-PVLPPGLLELSIFSNPLTH-LPAL-  280 (788)
T ss_pred             CCCCCC-cCCcchh---cCCCEEEccCCcCCCCCC-CCCCCcEEEecCCccCcc-cCcccccceeeccCCchhh-hhhc-
Confidence            445555 4555433   345555555555555543 235555555555555532 2234455555555555542 2221 


Q ss_pred             cCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCC
Q 044176           82 YSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGL  161 (362)
Q Consensus        82 ~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L  161 (362)
                        ..+|+.|++++|+++ .+|..    .++|+.|++++|.+. .+|..    ...|+.|++++|.+++ +|..   ..+|
T Consensus       281 --p~~L~~L~Ls~N~Lt-~LP~~----p~~L~~LdLS~N~L~-~Lp~l----p~~L~~L~Ls~N~L~~-LP~l---p~~L  344 (788)
T PRK15387        281 --PSGLCKLWIFGNQLT-SLPVL----PPGLQELSVSDNQLA-SLPAL----PSELCKLWAYNNQLTS-LPTL---PSGL  344 (788)
T ss_pred             --hhhcCEEECcCCccc-ccccc----ccccceeECCCCccc-cCCCC----cccccccccccCcccc-cccc---cccc
Confidence              234555555555555 44431    134555555555554 23321    1235555555555542 2221   1345


Q ss_pred             cEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccc
Q 044176          162 EVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDE  241 (362)
Q Consensus       162 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~  241 (362)
                      +.|++++|++.. +|..   .++|+.|++++|.+... +..     ..+|+.|++++|.+.+ +|.              
T Consensus       345 q~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~L-P~l-----~~~L~~LdLs~N~Lt~-LP~--------------  399 (788)
T PRK15387        345 QELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSL-PAL-----PSGLKELIVSGNRLTS-LPV--------------  399 (788)
T ss_pred             ceEecCCCccCC-CCCC---CcccceehhhccccccC-ccc-----ccccceEEecCCcccC-CCC--------------
Confidence            555555555532 2221   23445555555554431 111     1345555555555442 221              


Q ss_pred             cCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhh
Q 044176          242 KGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFA  321 (362)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~  321 (362)
                                                      .+++|+.|++++|.++. +|..   ..+|+.|++++|+++ .+|..+.
T Consensus       400 --------------------------------l~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~  442 (788)
T PRK15387        400 --------------------------------LPSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLI  442 (788)
T ss_pred             --------------------------------cccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHh
Confidence                                            03568899999999884 4543   356888999999998 6888899


Q ss_pred             cCCCcCEEEccCCcccccCchhhhhh
Q 044176          322 NMIVLESLDLSSNKLHGRIPEQFVDA  347 (362)
Q Consensus       322 ~~~~L~~L~l~~n~~~~~~~~~~~~l  347 (362)
                      +++.|+.|++++|++++..+..+..+
T Consensus       443 ~L~~L~~LdLs~N~Ls~~~~~~L~~l  468 (788)
T PRK15387        443 HLSSETTVNLEGNPLSERTLQALREI  468 (788)
T ss_pred             hccCCCeEECCCCCCCchHHHHHHHH
Confidence            99999999999999998777766444

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.89  E-value=1.5e-25  Score=188.80  Aligned_cols=310  Identities=25%  Similarity=0.312  Sum_probs=173.3

Q ss_pred             CCCcccccCCccccccCCCCcEEEcCCCccccccc--CCcCCCcEEEccCCcCCCCC-C---------------------
Q 044176            2 SNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ--HPWKNITVLNLQNNTIQGTI-L---------------------   57 (362)
Q Consensus         2 ~~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~--~~~~~L~~L~l~~n~~~~~~-~---------------------   57 (362)
                      .+|+++ ++|+.... |+.|+++|+-.|-++.+|+  +.+..|..|++..|++.... +                     
T Consensus       168 ~~n~l~-~l~~~~i~-m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpa  245 (565)
T KOG0472|consen  168 EGNKLK-ALPENHIA-MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPA  245 (565)
T ss_pred             cccchh-hCCHHHHH-HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHH
Confidence            355555 45555444 4666666666666666666  34555666666666554311 2                     


Q ss_pred             ---CCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhc--
Q 044176           58 ---VPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFAN--  132 (362)
Q Consensus        58 ---~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~--  132 (362)
                         +.++++..||+++|+++ ..|+.++.+++|++||+++|.++ .+|.+++.+  .|+.|-+.||++.. +-..+.+  
T Consensus       246 e~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl--hL~~L~leGNPlrT-iRr~ii~~g  320 (565)
T KOG0472|consen  246 EHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL--HLKFLALEGNPLRT-IRREIISKG  320 (565)
T ss_pred             HHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc--eeeehhhcCCchHH-HHHHHHccc
Confidence               22556666666666666 45666666666666666666666 566666665  46666666665431 1000000  


Q ss_pred             ---------------------------------------CCCCccEEeccCCcccCCCchhhhcC--CCCcEEEccCCCC
Q 044176          133 ---------------------------------------GSCDLRSLGLNSNKLRGSFPRYLADC--TGLEVVNVGNNMI  171 (362)
Q Consensus       133 ---------------------------------------~~~~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~  171 (362)
                                                             .+...+.|++++-+++.+..+.|..-  .-....+++.|++
T Consensus       321 T~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL  400 (565)
T KOG0472|consen  321 TQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQL  400 (565)
T ss_pred             HHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchH
Confidence                                                   00123334444444442222222211  1244455555554


Q ss_pred             CCCcchhccCCCCCCe-EEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCccccc
Q 044176          172 GDTFPSWLGSLPGLKI-LVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQ  250 (362)
Q Consensus       172 ~~~~~~~~~~~~~L~~-L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~  250 (362)
                      . .+|..+..+..+.+ +.++.|.+ +.++...  ..+++|..|+++.|-+. .+|.. +..+..++.++++.+.....+
T Consensus       401 ~-elPk~L~~lkelvT~l~lsnn~i-sfv~~~l--~~l~kLt~L~L~NN~Ln-~LP~e-~~~lv~Lq~LnlS~NrFr~lP  474 (565)
T KOG0472|consen  401 C-ELPKRLVELKELVTDLVLSNNKI-SFVPLEL--SQLQKLTFLDLSNNLLN-DLPEE-MGSLVRLQTLNLSFNRFRMLP  474 (565)
T ss_pred             h-hhhhhhHHHHHHHHHHHhhcCcc-ccchHHH--Hhhhcceeeecccchhh-hcchh-hhhhhhhheecccccccccch
Confidence            2 22222222222222 33333332 2233222  45566666666666555 45544 333444666666655322211


Q ss_pred             CCccccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEE
Q 044176          251 GEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLD  330 (362)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~  330 (362)
                      .                   ....+..++.+-.++|++....++.+.++.+|+.|++.+|.+. .+|+.+++|.+|++|+
T Consensus       475 ~-------------------~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLe  534 (565)
T KOG0472|consen  475 E-------------------CLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLE  534 (565)
T ss_pred             H-------------------HHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEE
Confidence            1                   1111445777777889998777777999999999999999998 7999999999999999


Q ss_pred             ccCCcccccCchhhh
Q 044176          331 LSSNKLHGRIPEQFV  345 (362)
Q Consensus       331 l~~n~~~~~~~~~~~  345 (362)
                      ++||+|. ..++.+.
T Consensus       535 L~gNpfr-~Pr~~iL  548 (565)
T KOG0472|consen  535 LDGNPFR-QPRHQIL  548 (565)
T ss_pred             ecCCccC-CCHHHHh
Confidence            9999999 4444443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.85  E-value=7.2e-23  Score=188.95  Aligned_cols=344  Identities=23%  Similarity=0.296  Sum_probs=170.9

Q ss_pred             CCcccccCCccccccCCCCcEEEcCCCccccccc--CCcCCCcEEEccCCcCCCCCCC--CCCCccEEEccCcccccCCc
Q 044176            3 NNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ--HPWKNITVLNLQNNTIQGTILV--PPPSTRAFLFSNNKLFGQIP   78 (362)
Q Consensus         3 ~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~--~~~~~L~~L~l~~n~~~~~~~~--~~~~L~~L~l~~~~~~~~~~   78 (362)
                      .|.+- ..|-.+....-+|+.|++++|++...|.  ..+.+|+.|+++.|.|......  .+.+|+.+.+.+|.+. ..|
T Consensus        30 ~N~~l-~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~-~lP  107 (1081)
T KOG0618|consen   30 RNSLL-SRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQ-SLP  107 (1081)
T ss_pred             ccccc-cCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhh-cCc
Confidence            34444 3444444444558888888888888776  3567788888888877654422  2677777777777766 567


Q ss_pred             ccccCCCCCCEEEcccCcccccCCCCccccc---------------------------------------ccccE-EEcc
Q 044176           79 PSIYSLSSLEYISLSHNNLSGTIPPCLGNFS---------------------------------------TQLTI-LHLN  118 (362)
Q Consensus        79 ~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~---------------------------------------~~L~~-L~l~  118 (362)
                      ..+..+++|++|+++.|.+. .+|..+..+.                                       ..+++ |++.
T Consensus       108 ~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr  186 (1081)
T KOG0618|consen  108 ASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLR  186 (1081)
T ss_pred             hhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecc
Confidence            77777788888888877775 4443322210                                       11222 3444


Q ss_pred             cccccCcchhhhhc-----------------CCC----------------------CccEEeccCCcccCCCchhhhcCC
Q 044176          119 NNYLQGRIPDAFAN-----------------GSC----------------------DLRSLGLNSNKLRGSFPRYLADCT  159 (362)
Q Consensus       119 ~~~~~~~~~~~~~~-----------------~~~----------------------~L~~L~l~~~~~~~~~~~~~~~l~  159 (362)
                      .|.+. ........                 .-+                      +|++++++.+.+. ..|.+++.+.
T Consensus       187 ~N~~~-~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~-~lp~wi~~~~  264 (1081)
T KOG0618|consen  187 YNEME-VLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS-NLPEWIGACA  264 (1081)
T ss_pred             cchhh-hhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhh-cchHHHHhcc
Confidence            43332 10000000                 001                      2333333433333 2344455555


Q ss_pred             CCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhh-hhh
Q 044176          160 GLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLET-MKN  238 (362)
Q Consensus       160 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~-l~~  238 (362)
                      +|+.++...|.+ ...|..+....+|+.+.+..|.+...++.   ..+.++|++|++..|.+. ..|...+..... +..
T Consensus       265 nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~nel~yip~~---le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~  339 (1081)
T KOG0618|consen  265 NLEALNANHNRL-VALPLRISRITSLVSLSAAYNELEYIPPF---LEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNT  339 (1081)
T ss_pred             cceEecccchhH-HhhHHHHhhhhhHHHHHhhhhhhhhCCCc---ccccceeeeeeehhcccc-ccchHHHhhhhHHHHH
Confidence            555555555555 22334444445555555555554432222   245678888888888887 455444433332 444


Q ss_pred             ccccCCCcccccCCcccccc------ceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcC
Q 044176          239 VDEKGSDGLYMQGEEDYYQD------SVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGL  312 (362)
Q Consensus       239 l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i  312 (362)
                      ++...+..............      ...-..+.....+..+.++|+.|++++|.+.......+.++..|++|+|+||++
T Consensus       340 ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL  419 (1081)
T KOG0618|consen  340 LNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKL  419 (1081)
T ss_pred             HhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchh
Confidence            44333322222110000000      000000111111122245555555555555544444455555555555555555


Q ss_pred             ccCchhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhccCCCccccCC
Q 044176          313 TGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFARPDLYTNA  362 (362)
Q Consensus       313 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~~~~l~~n~  362 (362)
                      + .+|..+..++.|+.|...+|++. ..| .+..   +..|.+.|++.|+
T Consensus       420 ~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~---l~qL~~lDlS~N~  463 (1081)
T KOG0618|consen  420 T-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQ---LPQLKVLDLSCNN  463 (1081)
T ss_pred             h-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhh---cCcceEEecccch
Confidence            5 45555555555555555555555 344 2333   3334444666553

>PLN03210 Resistant to P

Probab=99.85  E-value=5.2e-20  Score=186.05  Aligned_cols=316  Identities=18%  Similarity=0.186  Sum_probs=180.6

Q ss_pred             ccCCccccccCCCCcEEEcCCCccccccc-CCcCCCcEEEccCCcCCCC--CCCCCCCccEEEccCcccccCCcccccCC
Q 044176            8 GRISKSDSQRWKSLTYLDISNNFLTQIEQ-HPWKNITVLNLQNNTIQGT--ILVPPPSTRAFLFSNNKLFGQIPPSIYSL   84 (362)
Q Consensus         8 ~~~~~~~~~~~~~L~~L~ls~~~i~~~~~-~~~~~L~~L~l~~n~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l   84 (362)
                      ..+|..+...-++|+.|.+.++.++.+|. ..+.+|+.|++.++.+...  ....+++|+.++++++.....+| .++.+
T Consensus       578 ~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l  656 (1153)
T PLN03210        578 WHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMA  656 (1153)
T ss_pred             eecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-ccccC
Confidence            34566555443568888888888887776 3567788888888877642  23447888888888765444555 36778


Q ss_pred             CCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEE
Q 044176           85 SSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVV  164 (362)
Q Consensus        85 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  164 (362)
                      ++|++|++++|.....+|..+..+ ++|+.|++++|.....+|..+  .+++|++|++++|.....+|.   ...+|+.|
T Consensus       657 ~~Le~L~L~~c~~L~~lp~si~~L-~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L  730 (1153)
T PLN03210        657 TNLETLKLSDCSSLVELPSSIQYL-NKLEDLDMSRCENLEILPTGI--NLKSLYRLNLSGCSRLKSFPD---ISTNISWL  730 (1153)
T ss_pred             CcccEEEecCCCCccccchhhhcc-CCCCEEeCCCCCCcCccCCcC--CCCCCCEEeCCCCCCcccccc---ccCCcCee
Confidence            888888888776554777777776 678888888775444566654  236788888888754434332   23567777


Q ss_pred             EccCCCCCCCcchhccCCCCCCeEEccCCcCCCcccc-----ccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhc
Q 044176          165 NVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCE-----VNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNV  239 (362)
Q Consensus       165 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-----~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l  239 (362)
                      ++.+|.+.. +|..+ .+++|++|.+..+........     ......+++|+.|++++|.....+|.. +..+++|+.|
T Consensus       731 ~L~~n~i~~-lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~s-i~~L~~L~~L  807 (1153)
T PLN03210        731 DLDETAIEE-FPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSS-IQNLHKLEHL  807 (1153)
T ss_pred             ecCCCcccc-ccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChh-hhCCCCCCEE
Confidence            787777633 34332 455666666654321110000     001122356666666666555455554 4556666666


Q ss_pred             cccCCCcccc-cCCccccccceeeeecC--cchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCc
Q 044176          240 DEKGSDGLYM-QGEEDYYQDSVTVTVKG--RDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSI  316 (362)
Q Consensus       240 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~  316 (362)
                      ++.+|..... +... .......+....  ....++..+++++.|++++|.++ .+|..+..+++|+.|++++|.-...+
T Consensus       808 ~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l  885 (1153)
T PLN03210        808 EIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRV  885 (1153)
T ss_pred             ECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCcc
Confidence            6655532211 1100 000000000100  01111122345666777766665 45666666677777777665433345


Q ss_pred             hhhhhcCCCcCEEEccCCc
Q 044176          317 PVSFANMIVLESLDLSSNK  335 (362)
Q Consensus       317 ~~~~~~~~~L~~L~l~~n~  335 (362)
                      |..+..++.|+.+++++|.
T Consensus       886 ~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        886 SLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CcccccccCCCeeecCCCc
Confidence            5556666666666666664

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.85  E-value=7.9e-20  Score=184.73  Aligned_cols=329  Identities=15%  Similarity=0.137  Sum_probs=222.0

Q ss_pred             CCccccccCCCCcEEEcCCCccc-------cccc--CC-cCCCcEEEccCCcCCCCCCC-CCCCccEEEccCcccccCCc
Q 044176           10 ISKSDSQRWKSLTYLDISNNFLT-------QIEQ--HP-WKNITVLNLQNNTIQGTILV-PPPSTRAFLFSNNKLFGQIP   78 (362)
Q Consensus        10 ~~~~~~~~~~~L~~L~ls~~~i~-------~~~~--~~-~~~L~~L~l~~n~~~~~~~~-~~~~L~~L~l~~~~~~~~~~   78 (362)
                      +...+|..|++|+.|.+..+...       .++.  .. .++|+.|++.++.+...... .+.+|+.|++.++.+. .++
T Consensus       549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~-~L~  627 (1153)
T PLN03210        549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLE-KLW  627 (1153)
T ss_pred             ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCcccc-ccc
Confidence            55667888999999999765422       1222  12 24699999999877653322 3789999999999987 567


Q ss_pred             ccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcC
Q 044176           79 PSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADC  158 (362)
Q Consensus        79 ~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l  158 (362)
                      ..+..+++|+.|+++++.....+|. +..+ ++|++|++++|.....+|..+... ++|+.|++++|.....+|..+ ++
T Consensus       628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l-~~Le~L~L~~c~~L~~lp~si~~L-~~L~~L~L~~c~~L~~Lp~~i-~l  703 (1153)
T PLN03210        628 DGVHSLTGLRNIDLRGSKNLKEIPD-LSMA-TNLETLKLSDCSSLVELPSSIQYL-NKLEDLDMSRCENLEILPTGI-NL  703 (1153)
T ss_pred             cccccCCCCCEEECCCCCCcCcCCc-cccC-CcccEEEecCCCCccccchhhhcc-CCCCEEeCCCCCCcCccCCcC-CC
Confidence            7788999999999998764436764 5555 799999999987666788887765 899999999986544666554 78


Q ss_pred             CCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccC------CCchhHHhh
Q 044176          159 TGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTG------FLPRWIFVS  232 (362)
Q Consensus       159 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~------~~~~~~~~~  232 (362)
                      ++|+.|++++|......|..   ..+|++|++++|.+... |..   ..+++|+.|.+..+....      ..+......
T Consensus       704 ~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~l-P~~---~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~  776 (1153)
T PLN03210        704 KSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEF-PSN---LRLENLDELILCEMKSEKLWERVQPLTPLMTML  776 (1153)
T ss_pred             CCCCEEeCCCCCCccccccc---cCCcCeeecCCCccccc-ccc---ccccccccccccccchhhccccccccchhhhhc
Confidence            99999999999765555542   46889999999987653 322   246788888887643211      111122334


Q ss_pred             hhhhhhccccCCCccc-ccCCccccccceeeeecCc--chHhh--hhcccccEEeccCcccCCCcchhhcCCCCCcEEEc
Q 044176          233 LETMKNVDEKGSDGLY-MQGEEDYYQDSVTVTVKGR--DLVLK--RIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNL  307 (362)
Q Consensus       233 ~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l  307 (362)
                      .++|+.+++.++.... ++.....+.....+....+  ...++  ..+++|+.|++++|......|.   ..++|+.|++
T Consensus       777 ~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~---~~~nL~~L~L  853 (1153)
T PLN03210        777 SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPD---ISTNISDLNL  853 (1153)
T ss_pred             cccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccc---cccccCEeEC
Confidence            5678888888774322 2222111222222222111  00111  1356788888887754333333   2367888999


Q ss_pred             cCCcCccCchhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhccC
Q 044176          308 SHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFA  354 (362)
Q Consensus       308 ~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~  354 (362)
                      ++|.++ .+|.++..+++|+.|++++|+-...+|..+..++.|+.++
T Consensus       854 s~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~  899 (1153)
T PLN03210        854 SRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVD  899 (1153)
T ss_pred             CCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeee
Confidence            999888 6788899999999999998654445776666666665554

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.85  E-value=1.7e-20  Score=177.34  Aligned_cols=255  Identities=24%  Similarity=0.305  Sum_probs=174.5

Q ss_pred             CCcEEEcCCCcccccccCCcCCCcEEEccCCcCCCCCCCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccc
Q 044176           20 SLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSG   99 (362)
Q Consensus        20 ~L~~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~   99 (362)
                      .-..|+++++.++.+|....++|+.|++.+|.++.. +..+++|+.|++++|.++. +|..   .++|+.|++++|.++ 
T Consensus       202 ~~~~LdLs~~~LtsLP~~l~~~L~~L~L~~N~Lt~L-P~lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~N~L~-  275 (788)
T PRK15387        202 GNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSL-PALPPELRTLEVSGNQLTS-LPVL---PPGLLELSIFSNPLT-  275 (788)
T ss_pred             CCcEEEcCCCCCCcCCcchhcCCCEEEccCCcCCCC-CCCCCCCcEEEecCCccCc-ccCc---ccccceeeccCCchh-
Confidence            356788888888888875556788888888887753 3346778888888887773 3432   467778888888776 


Q ss_pred             cCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhc
Q 044176          100 TIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWL  179 (362)
Q Consensus       100 ~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~  179 (362)
                      .+|..    ..+|+.|++++|.+. .+|..    .++|+.|++++|.+++ +|..   ...|+.|++++|.+++ +|.  
T Consensus       276 ~Lp~l----p~~L~~L~Ls~N~Lt-~LP~~----p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~--  339 (788)
T PRK15387        276 HLPAL----PSGLCKLWIFGNQLT-SLPVL----PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPT--  339 (788)
T ss_pred             hhhhc----hhhcCEEECcCCccc-ccccc----ccccceeECCCCcccc-CCCC---cccccccccccCcccc-ccc--
Confidence            55542    246777788888776 45542    2567888888887763 3332   2356677777777643 332  


Q ss_pred             cCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccc
Q 044176          180 GSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDS  259 (362)
Q Consensus       180 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~  259 (362)
                       -..+|+.|++++|++...+. .     .++|+.|++++|.+.. +|..                               
T Consensus       340 -lp~~Lq~LdLS~N~Ls~LP~-l-----p~~L~~L~Ls~N~L~~-LP~l-------------------------------  380 (788)
T PRK15387        340 -LPSGLQELSVSDNQLASLPT-L-----PSELYKLWAYNNRLTS-LPAL-------------------------------  380 (788)
T ss_pred             -cccccceEecCCCccCCCCC-C-----Ccccceehhhcccccc-Cccc-------------------------------
Confidence             12467777777777765221 1     2456667777666652 2211                               


Q ss_pred             eeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCccccc
Q 044176          260 VTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGR  339 (362)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~  339 (362)
                                     +++|+.|++++|.+++ +|..   .++|+.|++++|+++. +|..   ..+|+.|++++|+++ .
T Consensus       381 ---------------~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~  436 (788)
T PRK15387        381 ---------------PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-R  436 (788)
T ss_pred             ---------------ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-c
Confidence                           3468999999999984 4443   3689999999999984 5653   347889999999999 6


Q ss_pred             CchhhhhhHhhhccCCCccccCC
Q 044176          340 IPEQFVDAEICSSFARPDLYTNA  362 (362)
Q Consensus       340 ~~~~~~~l~~L~~l~~~~l~~n~  362 (362)
                      +|+.+..++.|+.+   ++++|.
T Consensus       437 LP~sl~~L~~L~~L---dLs~N~  456 (788)
T PRK15387        437 LPESLIHLSSETTV---NLEGNP  456 (788)
T ss_pred             cChHHhhccCCCeE---ECCCCC
Confidence            89888877766666   777774

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.84  E-value=1.6e-22  Score=170.24  Aligned_cols=277  Identities=20%  Similarity=0.184  Sum_probs=166.9

Q ss_pred             CCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEccc-ccccCcchhhhhcCCCCcc
Q 044176           60 PPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNN-NYLQGRIPDAFANGSCDLR  138 (362)
Q Consensus        60 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~  138 (362)
                      ++....+.+..|.|+.+.+.+|..+++|+.|||++|+|+..-|..+..+ +++..|.+.+ |+|+ .+|...+..+..++
T Consensus        66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL-~~l~~Lvlyg~NkI~-~l~k~~F~gL~slq  143 (498)
T KOG4237|consen   66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGL-ASLLSLVLYGNNKIT-DLPKGAFGGLSSLQ  143 (498)
T ss_pred             CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhh-HhhhHHHhhcCCchh-hhhhhHhhhHHHHH
Confidence            3444455555555555566666666666666666666663333333333 4555555544 5665 45555555555666


Q ss_pred             EEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCcc----------ccccccccC
Q 044176          139 SLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPL----------CEVNIMLPF  208 (362)
Q Consensus       139 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~----------~~~~~~~~~  208 (362)
                      -|.+.-|++......+|..++.+..|.+.+|.+...-...+..+..++++.+..|.+....          .....++..
T Consensus       144 rLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsga  223 (498)
T KOG4237|consen  144 RLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGA  223 (498)
T ss_pred             HHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccc
Confidence            6666666666555666666666666666666653333335666666666666666532110          000011222


Q ss_pred             CcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCccc
Q 044176          209 EALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQF  288 (362)
Q Consensus       209 ~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~  288 (362)
                      +...-..+.+.++..+.+..+...+..+..--...+                 ......+...+..+++|+.|++++|++
T Consensus       224 rc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d-----------------~~d~~cP~~cf~~L~~L~~lnlsnN~i  286 (498)
T KOG4237|consen  224 RCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSED-----------------FPDSICPAKCFKKLPNLRKLNLSNNKI  286 (498)
T ss_pred             eecchHHHHHHHhcccchhhhhhhHHhHHHhhcccc-----------------CcCCcChHHHHhhcccceEeccCCCcc
Confidence            222333333333332222222222222111000000                 011122233345589999999999999


Q ss_pred             CCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhccCC
Q 044176          289 QGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFAR  355 (362)
Q Consensus       289 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~~  355 (362)
                      +++-..+|++...+++|+|..|++....-..|.++..|+.|+|.+|+|+-..|..|..+..|..+++
T Consensus       287 ~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l  353 (498)
T KOG4237|consen  287 TRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNL  353 (498)
T ss_pred             chhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeeh
Confidence            9888899999999999999999998766678999999999999999999999999998888887743

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.83  E-value=6.6e-20  Score=174.33  Aligned_cols=247  Identities=26%  Similarity=0.361  Sum_probs=156.1

Q ss_pred             CCCcEEEcCCCcccccccCCcCCCcEEEccCCcCCCCCCCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCccc
Q 044176           19 KSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLS   98 (362)
Q Consensus        19 ~~L~~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~   98 (362)
                      .+...|+++++.++.+|....++++.|++++|.++.......++|++|++++|.++ .+|..+.  .+|+.|++++|.+.
T Consensus       178 ~~~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~  254 (754)
T PRK15370        178 NNKTELRLKILGLTTIPACIPEQITTLILDNNELKSLPENLQGNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT  254 (754)
T ss_pred             cCceEEEeCCCCcCcCCcccccCCcEEEecCCCCCcCChhhccCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC
Confidence            34667788877777777655567778888877777544333567777777777776 3454442  46777788877777


Q ss_pred             ccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchh
Q 044176           99 GTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSW  178 (362)
Q Consensus        99 ~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  178 (362)
                       .+|..+.   .+|+.|++++|++. .+|..+.   ++|++|++++|.++. +|..+.  ..|+.|++++|.+.. +|..
T Consensus       255 -~LP~~l~---s~L~~L~Ls~N~L~-~LP~~l~---~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-LP~~  322 (754)
T PRK15370        255 -ELPERLP---SALQSLDLFHNKIS-CLPENLP---EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-LPET  322 (754)
T ss_pred             -cCChhHh---CCCCEEECcCCccC-ccccccC---CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-CCcc
Confidence             6666543   36777777777776 4565432   467777777777763 343332  356777777777743 3332


Q ss_pred             ccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCcccccc
Q 044176          179 LGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQD  258 (362)
Q Consensus       179 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~  258 (362)
                      +  .++|+.|++++|.++.. +...    .++|+.|++++|.+. .+|..+                             
T Consensus       323 l--~~sL~~L~Ls~N~Lt~L-P~~l----~~sL~~L~Ls~N~L~-~LP~~l-----------------------------  365 (754)
T PRK15370        323 L--PPGLKTLEAGENALTSL-PASL----PPELQVLDVSKNQIT-VLPETL-----------------------------  365 (754)
T ss_pred             c--cccceeccccCCccccC-Chhh----cCcccEEECCCCCCC-cCChhh-----------------------------
Confidence            2  25677777777776652 2211    257777777777765 333321                             


Q ss_pred             ceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhh----hcCCCcCEEEccCC
Q 044176          259 SVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSF----ANMIVLESLDLSSN  334 (362)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~----~~~~~L~~L~l~~n  334 (362)
                                      +++|+.|++++|+++ .+|..+.  ..|+.|++++|++. .+|..+    ..++.+..+++.+|
T Consensus       366 ----------------p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~N  425 (754)
T PRK15370        366 ----------------PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYN  425 (754)
T ss_pred             ----------------cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCC
Confidence                            345777777777776 3444432  35777777777776 344433    34467777777777


Q ss_pred             ccc
Q 044176          335 KLH  337 (362)
Q Consensus       335 ~~~  337 (362)
                      +++
T Consensus       426 pls  428 (754)
T PRK15370        426 PFS  428 (754)
T ss_pred             Ccc
Confidence            776

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.83  E-value=1.7e-22  Score=186.52  Aligned_cols=282  Identities=25%  Similarity=0.336  Sum_probs=175.1

Q ss_pred             EEEcCCCcccccccCCcCCCcEEEccCCcCCCCCCCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCC
Q 044176           23 YLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIP  102 (362)
Q Consensus        23 ~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~  102 (362)
                      .|++++|.++......+++|+.+....|++.... ..-++++.|+.++|.+....+.  ....+|++++++.++++ .+|
T Consensus       182 ~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~-~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp  257 (1081)
T KOG0618|consen  182 QLDLRYNEMEVLDLSNLANLEVLHCERNQLSELE-ISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLP  257 (1081)
T ss_pred             eeecccchhhhhhhhhccchhhhhhhhcccceEE-ecCcchheeeeccCcceeeccc--cccccceeeecchhhhh-cch
Confidence            4778877777555556666666666655544211 1134566666666666522211  12346666666666666 566


Q ss_pred             CCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchh----
Q 044176          103 PCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSW----  178 (362)
Q Consensus       103 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----  178 (362)
                      +.++.+ .+|+.+++.+|++. .+|..+... .+|+.+.+..|.+. .+|......+.|++|++..|++.......    
T Consensus       258 ~wi~~~-~nle~l~~n~N~l~-~lp~ri~~~-~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~  333 (1081)
T KOG0618|consen  258 EWIGAC-ANLEALNANHNRLV-ALPLRISRI-TSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVL  333 (1081)
T ss_pred             HHHHhc-ccceEecccchhHH-hhHHHHhhh-hhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhh
Confidence            555555 46666666666664 555555543 55666666666555 44555555566666666665553221111    


Q ss_pred             ---------------------ccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhh
Q 044176          179 ---------------------LGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMK  237 (362)
Q Consensus       179 ---------------------~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~  237 (362)
                                           -..++.|+.|++.+|.+++..  +..+..+++|+.|++++|++. .+|...+.+++.|+
T Consensus       334 ~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c--~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~Le  410 (1081)
T KOG0618|consen  334 NASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSC--FPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELE  410 (1081)
T ss_pred             hHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccc--hhhhccccceeeeeecccccc-cCCHHHHhchHHhH
Confidence                                 112345777888888887633  334578899999999999988 67777788888888


Q ss_pred             hccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCc-
Q 044176          238 NVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSI-  316 (362)
Q Consensus       238 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~-  316 (362)
                      +|+++++....+..                   -...++.|+.|...+|.+. ..| .+..++.|+.+|++.|.++... 
T Consensus       411 eL~LSGNkL~~Lp~-------------------tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l  469 (1081)
T KOG0618|consen  411 ELNLSGNKLTTLPD-------------------TVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTL  469 (1081)
T ss_pred             HHhcccchhhhhhH-------------------HHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhh
Confidence            88888876443331                   1122566778888778776 445 5678888888888888887432 


Q ss_pred             hhhhhcCCCcCEEEccCCccc
Q 044176          317 PVSFANMIVLESLDLSSNKLH  337 (362)
Q Consensus       317 ~~~~~~~~~L~~L~l~~n~~~  337 (362)
                      +.... -|.|++||++||.-.
T Consensus       470 ~~~~p-~p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  470 PEALP-SPNLKYLDLSGNTRL  489 (1081)
T ss_pred             hhhCC-CcccceeeccCCccc
Confidence            33222 278888888888743

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.83  E-value=2.9e-20  Score=176.70  Aligned_cols=240  Identities=23%  Similarity=0.348  Sum_probs=181.2

Q ss_pred             CCCCcccccCCccccccCCCCcEEEcCCCcccccccCCcCCCcEEEccCCcCCCCCCCCCCCccEEEccCcccccCCccc
Q 044176            1 LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPS   80 (362)
Q Consensus         1 L~~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~   80 (362)
                      |+++.++ .+|..+.   ++++.|++++|.|+.++...+++|+.|++++|.++.......++|+.|++++|.+. .+|..
T Consensus       185 L~~~~Lt-sLP~~Ip---~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~N~L~-~LP~~  259 (754)
T PRK15370        185 LKILGLT-TIPACIP---EQITTLILDNNELKSLPENLQGNIKTLYANSNQLTSIPATLPDTIQEMELSINRIT-ELPER  259 (754)
T ss_pred             eCCCCcC-cCCcccc---cCCcEEEecCCCCCcCChhhccCCCEEECCCCccccCChhhhccccEEECcCCccC-cCChh
Confidence            4567888 7887654   67999999999999999877789999999999988644333568999999999998 56666


Q ss_pred             ccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCC
Q 044176           81 IYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTG  160 (362)
Q Consensus        81 ~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~  160 (362)
                      +.  .+|+.|++++|+++ .+|..+.   ++|+.|++++|.++ .+|..+.   ++|++|++++|.++. +|..+  .++
T Consensus       260 l~--s~L~~L~Ls~N~L~-~LP~~l~---~sL~~L~Ls~N~Lt-~LP~~lp---~sL~~L~Ls~N~Lt~-LP~~l--~~s  326 (754)
T PRK15370        260 LP--SALQSLDLFHNKIS-CLPENLP---EELRYLSVYDNSIR-TLPAHLP---SGITHLNVQSNSLTA-LPETL--PPG  326 (754)
T ss_pred             Hh--CCCCEEECcCCccC-ccccccC---CCCcEEECCCCccc-cCcccch---hhHHHHHhcCCcccc-CCccc--ccc
Confidence            53  58999999999998 7887654   47999999999998 5665543   478999999999984 45433  368


Q ss_pred             CcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhcc
Q 044176          161 LEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVD  240 (362)
Q Consensus       161 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~  240 (362)
                      |+.|++++|.++. +|..+  .++|+.|++++|++... +...    .++|+.|++++|.+. .+|...           
T Consensus       327 L~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~~L-P~~l----p~~L~~LdLs~N~Lt-~LP~~l-----------  386 (754)
T PRK15370        327 LKTLEAGENALTS-LPASL--PPELQVLDVSKNQITVL-PETL----PPTITTLDVSRNALT-NLPENL-----------  386 (754)
T ss_pred             ceeccccCCcccc-CChhh--cCcccEEECCCCCCCcC-Chhh----cCCcCEEECCCCcCC-CCCHhH-----------
Confidence            9999999999865 45444  37999999999998753 3222    368999999999988 445432           


Q ss_pred             ccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCcccCCCcch----hhcCCCCCcEEEccCCcCc
Q 044176          241 EKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQ----VLGDFKSLIVLNLSHNGLT  313 (362)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~----~~~~~~~L~~L~l~~n~i~  313 (362)
                                                        ...|+.|++++|+++ .+|.    ..+.++.+..+++.+|.+.
T Consensus       387 ----------------------------------~~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        387 ----------------------------------PAALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             ----------------------------------HHHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence                                              123556667777665 3333    2334466777777777766

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.79  E-value=7.1e-20  Score=161.50  Aligned_cols=94  Identities=29%  Similarity=0.344  Sum_probs=41.6

Q ss_pred             ccccCCCCCCEEEcccCcccccCCCCccccc--ccccEEEcccccccCc----chhhhhcCCCCccEEeccCCcccCC--
Q 044176           79 PSIYSLSSLEYISLSHNNLSGTIPPCLGNFS--TQLTILHLNNNYLQGR----IPDAFANGSCDLRSLGLNSNKLRGS--  150 (362)
Q Consensus        79 ~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~--~~L~~L~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~--  150 (362)
                      ..+..+++|++|++++|.+.+..+..+..+.  ++|++|++++|++.+.    +...+....++|++|++++|.+++.  
T Consensus        75 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~  154 (319)
T cd00116          75 QGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC  154 (319)
T ss_pred             HHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH
Confidence            3455566666666666665432222222221  1266666666555421    1111111114455555555555421  


Q ss_pred             --CchhhhcCCCCcEEEccCCCCC
Q 044176          151 --FPRYLADCTGLEVVNVGNNMIG  172 (362)
Q Consensus       151 --~~~~~~~l~~L~~L~l~~~~~~  172 (362)
                        .+..+..++.|+.|++++|.+.
T Consensus       155 ~~~~~~~~~~~~L~~L~l~~n~l~  178 (319)
T cd00116         155 EALAKALRANRDLKELNLANNGIG  178 (319)
T ss_pred             HHHHHHHHhCCCcCEEECcCCCCc
Confidence              1222333445555555555443

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.77  E-value=2.3e-19  Score=158.24  Aligned_cols=240  Identities=22%  Similarity=0.203  Sum_probs=143.3

Q ss_pred             CccEEEccCccccc----CCcccccCCCCCCEEEcccCcccc------cCCCCcccccccccEEEcccccccCcchhhhh
Q 044176           62 STRAFLFSNNKLFG----QIPPSIYSLSSLEYISLSHNNLSG------TIPPCLGNFSTQLTILHLNNNYLQGRIPDAFA  131 (362)
Q Consensus        62 ~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~L~~~~~~~------~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~  131 (362)
                      .|+.++++++.+..    .++..+...+.+++++++++.+..      .++..+... ++|+.|++++|.+....+..+.
T Consensus        24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~  102 (319)
T cd00116          24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG-CGLQELDLSDNALGPDGCGVLE  102 (319)
T ss_pred             hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhc-CceeEEEccCCCCChhHHHHHH
Confidence            34555555554422    233445556667777777776651      122233333 5777888877777644444443


Q ss_pred             cCC--CCccEEeccCCcccCC----CchhhhcC-CCCcEEEccCCCCCCC----cchhccCCCCCCeEEccCCcCCCccc
Q 044176          132 NGS--CDLRSLGLNSNKLRGS----FPRYLADC-TGLEVVNVGNNMIGDT----FPSWLGSLPGLKILVLRSNRFYGPLC  200 (362)
Q Consensus       132 ~~~--~~L~~L~l~~~~~~~~----~~~~~~~l-~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~  200 (362)
                      ...  ++|++|++++|.+.+.    +...+..+ ++|+.|++++|.+++.    .+..+..+++|++|++++|.+.+...
T Consensus       103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  182 (319)
T cd00116         103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGI  182 (319)
T ss_pred             HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHH
Confidence            331  2377888877776532    12234445 6777777777776532    22345556677777777777664221


Q ss_pred             cc--cccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccc
Q 044176          201 EV--NIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIF  278 (362)
Q Consensus       201 ~~--~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  278 (362)
                      ..  .++..+++|++|++++|.+.+.....+...                                       ...+++|
T Consensus       183 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~---------------------------------------~~~~~~L  223 (319)
T cd00116         183 RALAEGLKANCNLEVLDLNNNGLTDEGASALAET---------------------------------------LASLKSL  223 (319)
T ss_pred             HHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH---------------------------------------hcccCCC
Confidence            11  123344577777777777653222111111                                       1126789


Q ss_pred             cEEeccCcccCCCcchhhc-C----CCCCcEEEccCCcCcc----CchhhhhcCCCcCEEEccCCcccccCc
Q 044176          279 TTIDLSSNQFQGEIPQVLG-D----FKSLIVLNLSHNGLTG----SIPVSFANMIVLESLDLSSNKLHGRIP  341 (362)
Q Consensus       279 ~~L~l~~n~~~~~~~~~~~-~----~~~L~~L~l~~n~i~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~  341 (362)
                      +.|++++|.+++.....+. .    .+.|+.|++++|.+++    .++..+..++.|+++++++|.++....
T Consensus       224 ~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~  295 (319)
T cd00116         224 EVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGA  295 (319)
T ss_pred             CEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHH
Confidence            9999999998864333332 2    3789999999999873    334556777899999999999996533

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.73  E-value=9.7e-20  Score=153.56  Aligned_cols=146  Identities=20%  Similarity=0.190  Sum_probs=114.3

Q ss_pred             EEEcCCCcccccccCCcCCCcEEEccCCcCCCC---CCCCCCCccEEEccCcccccCCcccccCCCCCCEEEccc-Cccc
Q 044176           23 YLDISNNFLTQIEQHPWKNITVLNLQNNTIQGT---ILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSH-NNLS   98 (362)
Q Consensus        23 ~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~   98 (362)
                      .++.++..++.+|...-+....++|+.|+|+..   .|..+++|+.|++++|.|+.+.|++|.+++.+.+|-+-+ |+|+
T Consensus        50 ~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~  129 (498)
T KOG4237|consen   50 IVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT  129 (498)
T ss_pred             eEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence            467788888888887777888899999988754   455588899999999999999999999999988876666 8998


Q ss_pred             ccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCC
Q 044176           99 GTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNM  170 (362)
Q Consensus        99 ~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  170 (362)
                       .+|...+.....++.|.+.-|++.-.....+.. ++++..|.+.+|.+.......|..+..++.+.+..|.
T Consensus       130 -~l~k~~F~gL~slqrLllNan~i~Cir~~al~d-L~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np  199 (498)
T KOG4237|consen  130 -DLPKGAFGGLSSLQRLLLNANHINCIRQDALRD-LPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP  199 (498)
T ss_pred             -hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHH-hhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence             888877666578888888888887444445554 4889999999998874444477777777777776665

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.62  E-value=1.9e-17  Score=124.49  Aligned_cols=149  Identities=30%  Similarity=0.415  Sum_probs=102.1

Q ss_pred             CCCCcEEEcCCCccccccc--CCcCCCcEEEccCCcCCCCC--CCCCCCccEEEccCcccccCCcccccCCCCCCEEEcc
Q 044176           18 WKSLTYLDISNNFLTQIEQ--HPWKNITVLNLQNNTIQGTI--LVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLS   93 (362)
Q Consensus        18 ~~~L~~L~ls~~~i~~~~~--~~~~~L~~L~l~~n~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~   93 (362)
                      +.+++.|.+|.|.++.+++  ..+.+|+.|++.+|+++...  ...+++|+.|+++-|.+. ..|..|+.++-|+.||+.
T Consensus        32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlt  110 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLT  110 (264)
T ss_pred             hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcc
Confidence            3788899999999999988  47888999999888887532  333666666666666655 566667777777777777


Q ss_pred             cCcccc-cCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCC
Q 044176           94 HNNLSG-TIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMI  171 (362)
Q Consensus        94 ~~~~~~-~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  171 (362)
                      .|++.. .+|..++.+ ..|+.|+++.|.+. .+|..+.+. ++|+.|.+++|.+. ..|..++.+++|+.|.+.+|++
T Consensus       111 ynnl~e~~lpgnff~m-~tlralyl~dndfe-~lp~dvg~l-t~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl  185 (264)
T KOG0617|consen  111 YNNLNENSLPGNFFYM-TTLRALYLGDNDFE-ILPPDVGKL-TNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL  185 (264)
T ss_pred             ccccccccCCcchhHH-HHHHHHHhcCCCcc-cCChhhhhh-cceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence            666653 456666555 46666666666665 566665554 66666666666655 4566666666666666666666

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.60  E-value=3.7e-17  Score=122.90  Aligned_cols=83  Identities=30%  Similarity=0.519  Sum_probs=54.1

Q ss_pred             ccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEE
Q 044176          110 TQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILV  189 (362)
Q Consensus       110 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  189 (362)
                      ..+..|.+++|.++ .+|..++.. .+|+.|++++|++. ..|..+..+++|+.|+++-|++ ...|+.|+.+|.|+.||
T Consensus        33 s~ITrLtLSHNKl~-~vppnia~l-~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl-~~lprgfgs~p~levld  108 (264)
T KOG0617|consen   33 SNITRLTLSHNKLT-VVPPNIAEL-KNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRL-NILPRGFGSFPALEVLD  108 (264)
T ss_pred             hhhhhhhcccCcee-ecCCcHHHh-hhhhhhhcccchhh-hcChhhhhchhhhheecchhhh-hcCccccCCCchhhhhh
Confidence            35666666666666 556666654 56777777777776 5666677777777777766665 45666666666666666


Q ss_pred             ccCCcCC
Q 044176          190 LRSNRFY  196 (362)
Q Consensus       190 l~~n~~~  196 (362)
                      +..|++.
T Consensus       109 ltynnl~  115 (264)
T KOG0617|consen  109 LTYNNLN  115 (264)
T ss_pred             ccccccc
Confidence            6666554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.42  E-value=2.6e-14  Score=119.34  Aligned_cols=249  Identities=23%  Similarity=0.228  Sum_probs=149.2

Q ss_pred             CcCCCcEEEccCCcCCC-------CCCCCCCCccEEEccCccc---ccCCc-------ccccCCCCCCEEEcccCccccc
Q 044176           38 PWKNITVLNLQNNTIQG-------TILVPPPSTRAFLFSNNKL---FGQIP-------PSIYSLSSLEYISLSHNNLSGT  100 (362)
Q Consensus        38 ~~~~L~~L~l~~n~~~~-------~~~~~~~~L~~L~l~~~~~---~~~~~-------~~~~~l~~L~~L~L~~~~~~~~  100 (362)
                      .+..++.+++++|.+..       ......+.|+..++++--.   ...+|       +++-.+++|++|+||+|.+...
T Consensus        28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~  107 (382)
T KOG1909|consen   28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK  107 (382)
T ss_pred             ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence            34456666666665542       1122234555555554311   11222       2334556777777777777643


Q ss_pred             CCCCcccc---cccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCc--
Q 044176          101 IPPCLGNF---STQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTF--  175 (362)
Q Consensus       101 ~~~~l~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--  175 (362)
                      .+..+..+   ...|++|.+.+|.+...-...+..   .|..+.         .....+.-+.|+.+...+|++.+..  
T Consensus       108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~---al~~l~---------~~kk~~~~~~Lrv~i~~rNrlen~ga~  175 (382)
T KOG1909|consen  108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR---ALFELA---------VNKKAASKPKLRVFICGRNRLENGGAT  175 (382)
T ss_pred             chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH---HHHHHH---------HHhccCCCcceEEEEeeccccccccHH
Confidence            33332222   135666666666654211111111   122211         1112234577888888888875432  


Q ss_pred             --chhccCCCCCCeEEccCCcCCCccc--cccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccC
Q 044176          176 --PSWLGSLPGLKILVLRSNRFYGPLC--EVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQG  251 (362)
Q Consensus       176 --~~~~~~~~~L~~L~l~~n~~~~~~~--~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~  251 (362)
                        ...++..+.|+.+.+..|.+.....  ...++..+++|+.||+.+|-++..-.......++.                
T Consensus       176 ~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s----------------  239 (382)
T KOG1909|consen  176 ALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSS----------------  239 (382)
T ss_pred             HHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcc----------------
Confidence              3456678899999999998864333  22367889999999999998874443332222221                


Q ss_pred             CccccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhh-----cCCCCCcEEEccCCcCcc----Cchhhhhc
Q 044176          252 EEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVL-----GDFKSLIVLNLSHNGLTG----SIPVSFAN  322 (362)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-----~~~~~L~~L~l~~n~i~~----~~~~~~~~  322 (362)
                                             +++|+.|++++|.+.......+     ...+.|+.|.+++|.|+.    .+...+..
T Consensus       240 -----------------------~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~e  296 (382)
T KOG1909|consen  240 -----------------------WPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAE  296 (382)
T ss_pred             -----------------------cchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhc
Confidence                                   5678999999999976655443     347899999999999983    23344566


Q ss_pred             CCCcCEEEccCCccc
Q 044176          323 MIVLESLDLSSNKLH  337 (362)
Q Consensus       323 ~~~L~~L~l~~n~~~  337 (362)
                      .|.|.+|+|++|++.
T Consensus       297 k~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  297 KPDLEKLNLNGNRLG  311 (382)
T ss_pred             chhhHHhcCCccccc
Confidence            899999999999984

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.30  E-value=1.6e-12  Score=108.82  Aligned_cols=185  Identities=22%  Similarity=0.223  Sum_probs=117.5

Q ss_pred             CCccEEeccCCcccCCCchh----hhcCCCCcEEEccCCCCCCCcchh-------------ccCCCCCCeEEccCCcCCC
Q 044176          135 CDLRSLGLNSNKLRGSFPRY----LADCTGLEVVNVGNNMIGDTFPSW-------------LGSLPGLKILVLRSNRFYG  197 (362)
Q Consensus       135 ~~L~~L~l~~~~~~~~~~~~----~~~l~~L~~L~l~~~~~~~~~~~~-------------~~~~~~L~~L~l~~n~~~~  197 (362)
                      +.|+++++|+|.+....+..    +.++..|++|.+.+|.+.......             .+.-+.|+.+....|.+..
T Consensus        92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen  171 (382)
T KOG1909|consen   92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN  171 (382)
T ss_pred             CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence            56777777777665433333    335667777777777663221111             2234677777777777654


Q ss_pred             ccccc--cccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhc
Q 044176          198 PLCEV--NIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRII  275 (362)
Q Consensus       198 ~~~~~--~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (362)
                      .....  .++...+.|+.+.+..|.|..+-.......                                       +..+
T Consensus       172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~ea---------------------------------------l~~~  212 (382)
T KOG1909|consen  172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEA---------------------------------------LEHC  212 (382)
T ss_pred             ccHHHHHHHHHhccccceEEEecccccCchhHHHHHH---------------------------------------HHhC
Confidence            32222  244556777777777777763322111111                                       2238


Q ss_pred             ccccEEeccCcccCCCc----chhhcCCCCCcEEEccCCcCccCchhhh-----hcCCCcCEEEccCCcccccCch----
Q 044176          276 TIFTTIDLSSNQFQGEI----PQVLGDFKSLIVLNLSHNGLTGSIPVSF-----ANMIVLESLDLSSNKLHGRIPE----  342 (362)
Q Consensus       276 ~~L~~L~l~~n~~~~~~----~~~~~~~~~L~~L~l~~n~i~~~~~~~~-----~~~~~L~~L~l~~n~~~~~~~~----  342 (362)
                      ++|++||+++|.++.+.    ...++.+++|++|++++|.+......+|     ...|+|+.|.+.+|.|+.....    
T Consensus       213 ~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~  292 (382)
T KOG1909|consen  213 PHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAA  292 (382)
T ss_pred             CcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHH
Confidence            89999999999998653    4456778899999999999987665554     4478999999999999864322    


Q ss_pred             hhhhhHhhhccCCCccccC
Q 044176          343 QFVDAEICSSFARPDLYTN  361 (362)
Q Consensus       343 ~~~~l~~L~~l~~~~l~~n  361 (362)
                      .+...+.|..|   ++.+|
T Consensus       293 ~~~ek~dL~kL---nLngN  308 (382)
T KOG1909|consen  293 CMAEKPDLEKL---NLNGN  308 (382)
T ss_pred             HHhcchhhHHh---cCCcc
Confidence            23334445554   66665

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.22  E-value=1.5e-11  Score=96.42  Aligned_cols=103  Identities=26%  Similarity=0.340  Sum_probs=27.8

Q ss_pred             CCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCC-chhhhcCCCCc
Q 044176           84 LSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSF-PRYLADCTGLE  162 (362)
Q Consensus        84 l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~  162 (362)
                      +.+|+.|++++|.++ .+. .+..+ +.|++|++++|+++ .++..+...+++|++|++++|.|.+.. -..+..+++|+
T Consensus        41 l~~L~~L~Ls~N~I~-~l~-~l~~L-~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~  116 (175)
T PF14580_consen   41 LDKLEVLDLSNNQIT-KLE-GLPGL-PRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLR  116 (175)
T ss_dssp             -TT--EEE-TTS--S---T-T-----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--
T ss_pred             hcCCCEEECCCCCCc-ccc-CccCh-hhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcc
Confidence            334444444444444 222 22222 34444444444444 222222222244555555554444211 12344455555


Q ss_pred             EEEccCCCCCCC---cchhccCCCCCCeEEc
Q 044176          163 VVNVGNNMIGDT---FPSWLGSLPGLKILVL  190 (362)
Q Consensus       163 ~L~l~~~~~~~~---~~~~~~~~~~L~~L~l  190 (362)
                      .|++.+|+++..   -...+..+|+|+.||-
T Consensus       117 ~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen  117 VLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             eeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            555555554322   1112345566665553

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.16  E-value=9.6e-12  Score=107.14  Aligned_cols=211  Identities=20%  Similarity=0.209  Sum_probs=113.4

Q ss_pred             cCCCCCCEEEcccCcccccCCC-CcccccccccEEEcccccccCc-chhhhhcCCCCccEEeccCCcccCCCch-hhhcC
Q 044176           82 YSLSSLEYISLSHNNLSGTIPP-CLGNFSTQLTILHLNNNYLQGR-IPDAFANGSCDLRSLGLNSNKLRGSFPR-YLADC  158 (362)
Q Consensus        82 ~~l~~L~~L~L~~~~~~~~~~~-~l~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l  158 (362)
                      +++++|++..|.++.+. ..+. ...+.+++++.||+++|-+..- .-..++..+|+|+.|+++.|.+...... .-..+
T Consensus       118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l  196 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL  196 (505)
T ss_pred             hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence            45667777777777775 3332 2233336777777777765421 1234455567777777777766532211 22245


Q ss_pred             CCCcEEEccCCCCCCCcch-hccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhh
Q 044176          159 TGLEVVNVGNNMIGDTFPS-WLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMK  237 (362)
Q Consensus       159 ~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~  237 (362)
                      +.|+.|.++.|.++..... ....+|+|..|++..|....  .......-+..|++|++++|.+...........     
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~--~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~-----  269 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIIL--IKATSTKILQTLQELDLSNNNLIDFDQGYKVGT-----  269 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccc--eecchhhhhhHHhhccccCCccccccccccccc-----
Confidence            6677777777766432222 23456777777777664211  111122334566777777766553332222222     


Q ss_pred             hccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCcccCCCc-chh-----hcCCCCCcEEEccCCc
Q 044176          238 NVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEI-PQV-----LGDFKSLIVLNLSHNG  311 (362)
Q Consensus       238 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~-----~~~~~~L~~L~l~~n~  311 (362)
                                                           ++.|+.|+++.|.+.+.- |+.     -..+++|+.|++..|+
T Consensus       270 -------------------------------------l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~  312 (505)
T KOG3207|consen  270 -------------------------------------LPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN  312 (505)
T ss_pred             -------------------------------------ccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCc
Confidence                                                 455566666666554321 111     2356667777777777


Q ss_pred             Ccc-CchhhhhcCCCcCEEEccCCccc
Q 044176          312 LTG-SIPVSFANMIVLESLDLSSNKLH  337 (362)
Q Consensus       312 i~~-~~~~~~~~~~~L~~L~l~~n~~~  337 (362)
                      |.+ .....+..+++|+.|.+..|+++
T Consensus       313 I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  313 IRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             cccccccchhhccchhhhhhccccccc
Confidence            641 11123455566666766666655

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.16  E-value=6.2e-12  Score=108.30  Aligned_cols=182  Identities=21%  Similarity=0.200  Sum_probs=99.7

Q ss_pred             ccccCCCCcEEEcCCCccccccc-----CCcCCCcEEEccCCcCCCCC----CCCCCCccEEEccCccccc-CCcccccC
Q 044176           14 DSQRWKSLTYLDISNNFLTQIEQ-----HPWKNITVLNLQNNTIQGTI----LVPPPSTRAFLFSNNKLFG-QIPPSIYS   83 (362)
Q Consensus        14 ~~~~~~~L~~L~ls~~~i~~~~~-----~~~~~L~~L~l~~n~~~~~~----~~~~~~L~~L~l~~~~~~~-~~~~~~~~   83 (362)
                      ....|++++.||+|+|-+..+.+     ..+|+|+.|+++.|.+....    -..+++|+.|.++.|+++- .+......
T Consensus       141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~  220 (505)
T KOG3207|consen  141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT  220 (505)
T ss_pred             hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence            44456777777777776665544     46777777777777654211    1126777777777777652 12223445


Q ss_pred             CCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchh-hhhcCCCCccEEeccCCcccCCC-chh-----hh
Q 044176           84 LSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPD-AFANGSCDLRSLGLNSNKLRGSF-PRY-----LA  156 (362)
Q Consensus        84 l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~-~~~-----~~  156 (362)
                      +|.|+.|+|..|.......... ..++.|+.|++++|++-+ .+. .....++.|..|+++.+.+.+.- |..     ..
T Consensus       221 fPsl~~L~L~~N~~~~~~~~~~-~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~  298 (505)
T KOG3207|consen  221 FPSLEVLYLEANEIILIKATST-KILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTH  298 (505)
T ss_pred             CCcHHHhhhhcccccceecchh-hhhhHHhhccccCCcccc-cccccccccccchhhhhccccCcchhcCCCccchhhhc
Confidence            6777777777774221111111 122457777777776542 221 11122366777777776665331 111     23


Q ss_pred             cCCCCcEEEccCCCCCCCc-chhccCCCCCCeEEccCCcCCC
Q 044176          157 DCTGLEVVNVGNNMIGDTF-PSWLGSLPGLKILVLRSNRFYG  197 (362)
Q Consensus       157 ~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~n~~~~  197 (362)
                      .+++|+.|++..|++.++. ...+..+++|+.+.+..|.++.
T Consensus       299 ~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  299 TFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             ccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence            4567777777777664331 1223345566666666665543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.15  E-value=2.6e-12  Score=114.08  Aligned_cols=190  Identities=21%  Similarity=0.336  Sum_probs=115.6

Q ss_pred             CcEEEcCCCccccccc--CCcCCCcEEEccCCcCCCCC--CCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCc
Q 044176           21 LTYLDISNNFLTQIEQ--HPWKNITVLNLQNNTIQGTI--LVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNN   96 (362)
Q Consensus        21 L~~L~ls~~~i~~~~~--~~~~~L~~L~l~~n~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~   96 (362)
                      ....|++.|++..++.  ..|..|+.+.+..|.+....  ...+..|+.++++.|++. ..|..++.+ -|+.|.+++|+
T Consensus        77 t~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvli~sNNk  154 (722)
T KOG0532|consen   77 TVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVLIVSNNK  154 (722)
T ss_pred             hhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeEEEecCc
Confidence            3446677777777666  35566666666666555332  233566666777777766 455555543 36667777777


Q ss_pred             ccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcc
Q 044176           97 LSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFP  176 (362)
Q Consensus        97 ~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  176 (362)
                      ++ .+|+.++ ....|..||.+.|.+. .+|..+... .+|+.|.+++|++. .+|+.+. .-.|..||++.|++ ..+|
T Consensus       155 l~-~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~l-~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNki-s~iP  227 (722)
T KOG0532|consen  155 LT-SLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGYL-TSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKI-SYLP  227 (722)
T ss_pred             cc-cCCcccc-cchhHHHhhhhhhhhh-hchHHhhhH-HHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCce-eecc
Confidence            76 6777766 3356777777777766 566666554 56677777777666 4555555 33567777777777 4566


Q ss_pred             hhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCC
Q 044176          177 SWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHN  219 (362)
Q Consensus       177 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n  219 (362)
                      -.|.+|..|++|.|.+|++...+.....-+...=.++|+..-+
T Consensus       228 v~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  228 VDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             hhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence            6677777777777777777653333322222222345555444

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.12  E-value=8.6e-11  Score=106.70  Aligned_cols=195  Identities=28%  Similarity=0.414  Sum_probs=150.0

Q ss_pred             EEEcCCCcc-ccccc-CCcCCCcEEEccCCcCCCCCCCC--CC-CccEEEccCcccccCCcccccCCCCCCEEEcccCcc
Q 044176           23 YLDISNNFL-TQIEQ-HPWKNITVLNLQNNTIQGTILVP--PP-STRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNL   97 (362)
Q Consensus        23 ~L~ls~~~i-~~~~~-~~~~~L~~L~l~~n~~~~~~~~~--~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~   97 (362)
                      .++.+.+++ ..... ..++.++.|++.+|.+.......  .+ +|+.|++++|.+. .+|..+..+++|+.|++++|++
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l  175 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDL  175 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchh
Confidence            577777776 33333 35578999999999988766544  42 8999999999998 4556788899999999999999


Q ss_pred             cccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcch
Q 044176           98 SGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPS  177 (362)
Q Consensus        98 ~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  177 (362)
                      . .+|...+.. +.|+.|++++|.+. .+|...... ..|+++.+++|.+. ..+..+..+..+..+.+.+|++.. .+.
T Consensus       176 ~-~l~~~~~~~-~~L~~L~ls~N~i~-~l~~~~~~~-~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~  249 (394)
T COG4886         176 S-DLPKLLSNL-SNLNNLDLSGNKIS-DLPPEIELL-SALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPE  249 (394)
T ss_pred             h-hhhhhhhhh-hhhhheeccCCccc-cCchhhhhh-hhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccc
Confidence            8 777766455 68999999999998 667654322 46999999999644 456678888888888888888743 256


Q ss_pred             hccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchh
Q 044176          178 WLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRW  228 (362)
Q Consensus       178 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~  228 (362)
                      .++.++++++|++++|.+.....    +....+++.++++++.+....+..
T Consensus       250 ~~~~l~~l~~L~~s~n~i~~i~~----~~~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         250 SIGNLSNLETLDLSNNQISSISS----LGSLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             hhccccccceecccccccccccc----ccccCccCEEeccCccccccchhh
Confidence            67888899999999999876443    377889999999999887555543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.10  E-value=1.6e-10  Score=104.93  Aligned_cols=169  Identities=33%  Similarity=0.465  Sum_probs=68.9

Q ss_pred             CCcEEEcCCCcccccccC--CcC-CCcEEEccCCcCCCC--CCCCCCCccEEEccCcccccCCcccccCCCCCCEEEccc
Q 044176           20 SLTYLDISNNFLTQIEQH--PWK-NITVLNLQNNTIQGT--ILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSH   94 (362)
Q Consensus        20 ~L~~L~ls~~~i~~~~~~--~~~-~L~~L~l~~n~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~   94 (362)
                      .++.+++.++.++++++.  .++ +|+.|++++|++...  ....++.|+.|++++|.+. .+|...+..+.|+.|++++
T Consensus       117 ~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~  195 (394)
T COG4886         117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSG  195 (394)
T ss_pred             ceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccC
Confidence            344444444444444441  221 444444444444443  2333444444444444444 2222222344444444444


Q ss_pred             CcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCC
Q 044176           95 NNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDT  174 (362)
Q Consensus        95 ~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  174 (362)
                      |++. .+|...... ..|+++++++|++. ..+..+... ..+..+.+.++++. ..+..++.++.++.|++++|.+...
T Consensus       196 N~i~-~l~~~~~~~-~~L~~l~~~~N~~~-~~~~~~~~~-~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i  270 (394)
T COG4886         196 NKIS-DLPPEIELL-SALEELDLSNNSII-ELLSSLSNL-KNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSI  270 (394)
T ss_pred             Cccc-cCchhhhhh-hhhhhhhhcCCcce-ecchhhhhc-ccccccccCCceee-eccchhccccccceecccccccccc
Confidence            4444 444332222 23444444444321 122222222 33444444444433 1233344444444444444444332


Q ss_pred             cchhccCCCCCCeEEccCCcCC
Q 044176          175 FPSWLGSLPGLKILVLRSNRFY  196 (362)
Q Consensus       175 ~~~~~~~~~~L~~L~l~~n~~~  196 (362)
                      .+  ++...+++.++++++.+.
T Consensus       271 ~~--~~~~~~l~~L~~s~n~~~  290 (394)
T COG4886         271 SS--LGSLTNLRELDLSGNSLS  290 (394)
T ss_pred             cc--ccccCccCEEeccCcccc
Confidence            22  344444444444444443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.08  E-value=2.1e-10  Score=89.96  Aligned_cols=124  Identities=23%  Similarity=0.193  Sum_probs=35.7

Q ss_pred             CCcEEEccCCcCCCCCCC--CCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcc
Q 044176           41 NITVLNLQNNTIQGTILV--PPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLN  118 (362)
Q Consensus        41 ~L~~L~l~~n~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~  118 (362)
                      ++++|++++|.|+...-.  .+.+|+.|++++|.+...  +.+..+++|++|++++|+++ .+.+.+....++|++|+++
T Consensus        20 ~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~   96 (175)
T PF14580_consen   20 KLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLS   96 (175)
T ss_dssp             ----------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--EEE-T
T ss_pred             ccccccccccccccccchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECc
Confidence            344444444444432111  234455555555555432  23555666666666666665 4443332222566666666


Q ss_pred             cccccCcchhhhhcCCCCccEEeccCCcccCCC---chhhhcCCCCcEEEcc
Q 044176          119 NNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSF---PRYLADCTGLEVVNVG  167 (362)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~l~~L~~L~l~  167 (362)
                      +|++.....-.....+++|+.|++.+|+++...   ...+..+|+|+.||-.
T Consensus        97 ~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   97 NNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             TS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             CCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            666543211111122366777777777666321   1245567888887643

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.07  E-value=4.8e-11  Score=98.27  Aligned_cols=76  Identities=20%  Similarity=0.229  Sum_probs=35.8

Q ss_pred             cccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCccccc-CchhhhhhHhhhcc
Q 044176          275 ITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGR-IPEQFVDAEICSSF  353 (362)
Q Consensus       275 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~l  353 (362)
                      +++|+.||+++|.++ ....+-..+-+.+.|.|++|.|..  ..++.++-+|..||+++|+|.+. ....++++|+|..+
T Consensus       328 L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l  404 (490)
T KOG1259|consen  328 LPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETL  404 (490)
T ss_pred             cccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHH
Confidence            344555555555554 222233344455555555555542  13445555555555555555531 11234445555444

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.05  E-value=8.4e-12  Score=110.91  Aligned_cols=190  Identities=23%  Similarity=0.307  Sum_probs=155.2

Q ss_pred             EEEcCCCcccccccC----CcCCCcEEEccCCcCCCCCC--CCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCc
Q 044176           23 YLDISNNFLTQIEQH----PWKNITVLNLQNNTIQGTIL--VPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNN   96 (362)
Q Consensus        23 ~L~ls~~~i~~~~~~----~~~~L~~L~l~~n~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~   96 (362)
                      .|.+++..+..++..    .+..-...|++.|.+.....  ..+..|+.+.+.+|.+- .+|.+++++..|.+++|+.|+
T Consensus        54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~Nq  132 (722)
T KOG0532|consen   54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQ  132 (722)
T ss_pred             ccccccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccch
Confidence            366677777776653    33445677888887665332  23778889999999887 788999999999999999999


Q ss_pred             ccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcc
Q 044176           97 LSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFP  176 (362)
Q Consensus        97 ~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  176 (362)
                      ++ .+|..++.+  .|+.|.+++|+++ .+|..+. ..+.|..|+.+.|.+. ..|..++.+.+|+.|.+..|++. .+|
T Consensus       133 lS-~lp~~lC~l--pLkvli~sNNkl~-~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp  205 (722)
T KOG0532|consen  133 LS-HLPDGLCDL--PLKVLIVSNNKLT-SLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLP  205 (722)
T ss_pred             hh-cCChhhhcC--cceeEEEecCccc-cCCcccc-cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCC
Confidence            99 999999987  4999999999998 7898888 5689999999999998 67888999999999999999984 466


Q ss_pred             hhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCC
Q 044176          177 SWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGF  224 (362)
Q Consensus       177 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  224 (362)
                      ..+. .-.|..||++.|++...+..   |.+|+.|++|-+..|.+.+.
T Consensus       206 ~El~-~LpLi~lDfScNkis~iPv~---fr~m~~Lq~l~LenNPLqSP  249 (722)
T KOG0532|consen  206 EELC-SLPLIRLDFSCNKISYLPVD---FRKMRHLQVLQLENNPLQSP  249 (722)
T ss_pred             HHHh-CCceeeeecccCceeecchh---hhhhhhheeeeeccCCCCCC
Confidence            6676 45688999999998764333   38899999999999999844

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.05  E-value=1.5e-10  Score=74.67  Aligned_cols=61  Identities=36%  Similarity=0.520  Sum_probs=53.9

Q ss_pred             ccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcc
Q 044176          276 TIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKL  336 (362)
Q Consensus       276 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~  336 (362)
                      |+|+.|++++|+++...+..|.++++|+.|++++|.+....+.+|..+++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4688999999999877777889999999999999999977778899999999999999875

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.05  E-value=3.4e-10  Score=110.35  Aligned_cols=287  Identities=23%  Similarity=0.289  Sum_probs=159.4

Q ss_pred             CCCCcEEEcCCCccccccc-CCcCCCcEEEccCCc--C---CCCCCCCCCCccEEEccCcccccCCcccccCCCCCCEEE
Q 044176           18 WKSLTYLDISNNFLTQIEQ-HPWKNITVLNLQNNT--I---QGTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYIS   91 (362)
Q Consensus        18 ~~~L~~L~ls~~~i~~~~~-~~~~~L~~L~l~~n~--~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~   91 (362)
                      +...+...+-++.+..++. ..+++|+.|-+..|.  +   ...++..+|.|+.|++++|.-.+..|..++++.+|++|+
T Consensus       522 ~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~  601 (889)
T KOG4658|consen  522 WNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD  601 (889)
T ss_pred             hhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence            3567777777887777766 356678888887774  2   233466688888888888777677888888888888888


Q ss_pred             cccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCccc--CCCchhhhcCCCCcEEEccCC
Q 044176           92 LSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLR--GSFPRYLADCTGLEVVNVGNN  169 (362)
Q Consensus        92 L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~  169 (362)
                      ++++.+. .+|.++..+ ..|.+|++..+......|. +...+++|++|.+......  ......+..+..|+.+.+...
T Consensus       602 L~~t~I~-~LP~~l~~L-k~L~~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~  678 (889)
T KOG4658|consen  602 LSDTGIS-HLPSGLGNL-KKLIYLNLEVTGRLESIPG-ILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITIS  678 (889)
T ss_pred             ccCCCcc-ccchHHHHH-Hhhheeccccccccccccc-hhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecc
Confidence            8888888 888888888 5888888887664433333 3333478888887765422  112223344445555444322


Q ss_pred             CCCCCcchhccCCCCCC----eEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchh----HHhh-hhhhhhcc
Q 044176          170 MIGDTFPSWLGSLPGLK----ILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRW----IFVS-LETMKNVD  240 (362)
Q Consensus       170 ~~~~~~~~~~~~~~~L~----~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~----~~~~-~~~l~~l~  240 (362)
                      ..  .+...+..++.|.    .+.+..+..   ......+..+.+|+.|.+.++.+......+    .... ++++..+.
T Consensus       679 s~--~~~e~l~~~~~L~~~~~~l~~~~~~~---~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~  753 (889)
T KOG4658|consen  679 SV--LLLEDLLGMTRLRSLLQSLSIEGCSK---RTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVS  753 (889)
T ss_pred             hh--HhHhhhhhhHHHHHHhHhhhhccccc---ceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHH
Confidence            21  0111122233332    222222111   112223466778888888887765322211    0000 11222222


Q ss_pred             ccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccC-chhh
Q 044176          241 EKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGS-IPVS  319 (362)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~-~~~~  319 (362)
                      ...+....                   ........|+|+.|.+..|...+.+++....+..++.+.+..+.+.+. ....
T Consensus       754 ~~~~~~~r-------------------~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~  814 (889)
T KOG4658|consen  754 ILNCHMLR-------------------DLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCS  814 (889)
T ss_pred             hhcccccc-------------------ccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeec
Confidence            22211100                   001112367899999998877666665555556666555555555433 2233


Q ss_pred             hhcCCCcCEEEc
Q 044176          320 FANMIVLESLDL  331 (362)
Q Consensus       320 ~~~~~~L~~L~l  331 (362)
                      ..+++++..+.+
T Consensus       815 l~~l~~i~~~~l  826 (889)
T KOG4658|consen  815 LGGLPQLYWLPL  826 (889)
T ss_pred             CCCCceeEeccc
Confidence            334444433333

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.05  E-value=5.2e-11  Score=98.07  Aligned_cols=137  Identities=24%  Similarity=0.273  Sum_probs=105.0

Q ss_pred             cCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCC
Q 044176           82 YSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGL  161 (362)
Q Consensus        82 ~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L  161 (362)
                      --|+.|+++||++|.|+ .+.+++ ++.|.++.|++++|.+. .+.. ++. +++|+.|++++|.++ ...++-..+.++
T Consensus       281 dTWq~LtelDLS~N~I~-~iDESv-KL~Pkir~L~lS~N~i~-~v~n-La~-L~~L~~LDLS~N~Ls-~~~Gwh~KLGNI  354 (490)
T KOG1259|consen  281 DTWQELTELDLSGNLIT-QIDESV-KLAPKLRRLILSQNRIR-TVQN-LAE-LPQLQLLDLSGNLLA-ECVGWHLKLGNI  354 (490)
T ss_pred             chHhhhhhccccccchh-hhhhhh-hhccceeEEecccccee-eehh-hhh-cccceEeecccchhH-hhhhhHhhhcCE
Confidence            34778999999999998 777766 44489999999999987 3333 443 489999999999887 555666778889


Q ss_pred             cEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCch
Q 044176          162 EVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPR  227 (362)
Q Consensus       162 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~  227 (362)
                      +.|.+++|.+.+.  ..++++-+|..||+.+|++.. ......++.+|+|+++.+.+|.+.+...+
T Consensus       355 KtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~-ldeV~~IG~LPCLE~l~L~~NPl~~~vdY  417 (490)
T KOG1259|consen  355 KTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEE-LDEVNHIGNLPCLETLRLTGNPLAGSVDY  417 (490)
T ss_pred             eeeehhhhhHhhh--hhhHhhhhheeccccccchhh-HHHhcccccccHHHHHhhcCCCccccchH
Confidence            9999999988432  446677788999999998864 23344568899999999999998854443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.90  E-value=1.6e-09  Score=105.69  Aligned_cols=279  Identities=19%  Similarity=0.201  Sum_probs=160.9

Q ss_pred             CcCCCcEEEccCCcCCCCC-CCCCCCccEEEccCcc--cccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccE
Q 044176           38 PWKNITVLNLQNNTIQGTI-LVPPPSTRAFLFSNNK--LFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTI  114 (362)
Q Consensus        38 ~~~~L~~L~l~~n~~~~~~-~~~~~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~  114 (362)
                      .....+++.+-+|.+.... ....++|++|-+..|.  +....+..|..++.|++|||++|.-.+.+|..++.+. +|++
T Consensus       521 ~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li-~Lry  599 (889)
T KOG4658|consen  521 SWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELV-HLRY  599 (889)
T ss_pred             chhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhh-hhhc
Confidence            4556788888777776433 3336789999999886  5545555678899999999998766668999999984 8999


Q ss_pred             EEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCC--CCCcchhccCCCCCCeEEccC
Q 044176          115 LHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMI--GDTFPSWLGSLPGLKILVLRS  192 (362)
Q Consensus       115 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~--~~~~~~~~~~~~~L~~L~l~~  192 (362)
                      |+++++.+. .+|..+.+. ..|.+|++..+.....++.....+.+|++|.+.....  +......+..+.+|+.+....
T Consensus       600 L~L~~t~I~-~LP~~l~~L-k~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~  677 (889)
T KOG4658|consen  600 LDLSDTGIS-HLPSGLGNL-KKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI  677 (889)
T ss_pred             ccccCCCcc-ccchHHHHH-HhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence            999999988 899998886 7999999998765545566777789999998866542  222223344555555555433


Q ss_pred             CcCCCccccccccccCCccc----EEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcc
Q 044176          193 NRFYGPLCEVNIMLPFEALR----IIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRD  268 (362)
Q Consensus       193 n~~~~~~~~~~~~~~~~~L~----~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (362)
                      ...    .....+..+..|+    .+.+.++...  ........+.+++.|.+..+.......      .+    .....
T Consensus       678 ~s~----~~~e~l~~~~~L~~~~~~l~~~~~~~~--~~~~~~~~l~~L~~L~i~~~~~~e~~~------~~----~~~~~  741 (889)
T KOG4658|consen  678 SSV----LLLEDLLGMTRLRSLLQSLSIEGCSKR--TLISSLGSLGNLEELSILDCGISEIVI------EW----EESLI  741 (889)
T ss_pred             chh----HhHhhhhhhHHHHHHhHhhhhcccccc--eeecccccccCcceEEEEcCCCchhhc------cc----ccccc
Confidence            221    0001112222222    2222111111  111123445555555555554321110      00    00000


Q ss_pred             hHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccc
Q 044176          269 LVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHG  338 (362)
Q Consensus       269 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~  338 (362)
                      ..  ..++++..+.+.++..- ..+.+.-..++|+.|++..+...+.+.+....+..++.+.+..+.+.+
T Consensus       742 ~~--~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~  808 (889)
T KOG4658|consen  742 VL--LCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEG  808 (889)
T ss_pred             hh--hhHHHHHHHHhhccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEeccccccc
Confidence            00  01222333333333322 122333456788888888877665555666666666665555555554

>PLN03150 hypothetical protein; Provisional

Probab=98.87  E-value=7.8e-09  Score=98.59  Aligned_cols=107  Identities=25%  Similarity=0.426  Sum_probs=77.8

Q ss_pred             CCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEc
Q 044176           87 LEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNV  166 (362)
Q Consensus        87 L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  166 (362)
                      ++.|+|++|.+.+.+|..+..+ ++|+.|++++|.+.+.+|..+... ++|+.|++++|.+.+.+|..++.+++|+.|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L-~~L~~L~Ls~N~l~g~iP~~~~~l-~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L  497 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKL-RHLQSINLSGNSIRGNIPPSLGSI-TSLEVLDLSYNSFNGSIPESLGQLTSLRILNL  497 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCC-CCCCEEECCCCcccCcCChHHhCC-CCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence            6677777777777777777766 577777777777776777776654 77788888888777777777777788888888


Q ss_pred             cCCCCCCCcchhccCC-CCCCeEEccCCcC
Q 044176          167 GNNMIGDTFPSWLGSL-PGLKILVLRSNRF  195 (362)
Q Consensus       167 ~~~~~~~~~~~~~~~~-~~L~~L~l~~n~~  195 (362)
                      ++|.+.+..|..++.. .++..+++.+|..
T Consensus       498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        498 NGNSLSGRVPAALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             cCCcccccCChHHhhccccCceEEecCCcc
Confidence            8777777777666543 3556677777654

>PLN03150 hypothetical protein; Provisional

Probab=98.83  E-value=9.2e-09  Score=98.11  Aligned_cols=108  Identities=35%  Similarity=0.505  Sum_probs=96.9

Q ss_pred             CccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEe
Q 044176           62 STRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLG  141 (362)
Q Consensus        62 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  141 (362)
                      .++.|++++|.+.+.+|..++++++|+.|+|++|.+.+.+|..+..+ ++|+.|++++|.+.+.+|..+..+ ++|++|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l-~~L~~LdLs~N~lsg~iP~~l~~L-~~L~~L~  496 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSI-TSLEVLDLSYNSFNGSIPESLGQL-TSLRILN  496 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCC-CCCCEEECCCCCCCCCCchHHhcC-CCCCEEE
Confidence            47889999999999999999999999999999999998899888887 799999999999998899988875 8999999


Q ss_pred             ccCCcccCCCchhhhcC-CCCcEEEccCCCC
Q 044176          142 LNSNKLRGSFPRYLADC-TGLEVVNVGNNMI  171 (362)
Q Consensus       142 l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~  171 (362)
                      +++|.+.+.+|..+... .++..+++.+|..
T Consensus       497 Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        497 LNGNSLSGRVPAALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             CcCCcccccCChHHhhccccCceEEecCCcc
Confidence            99999999999888763 5677888888864

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.83  E-value=1.4e-09  Score=70.13  Aligned_cols=60  Identities=40%  Similarity=0.482  Sum_probs=53.9

Q ss_pred             CCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhccCCCccccCC
Q 044176          300 KSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFARPDLYTNA  362 (362)
Q Consensus       300 ~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~~~~l~~n~  362 (362)
                      |+|++|++++|+++...+..|..+++|++|++++|+++...|+.|..+++|+++   ++++|+
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L---~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYL---DLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEE---EETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEE---eCcCCc
Confidence            578999999999997777889999999999999999998888899999999998   777774

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.82  E-value=2.4e-10  Score=94.03  Aligned_cols=182  Identities=19%  Similarity=0.134  Sum_probs=97.7

Q ss_pred             CccEEeccCCcccCC-CchhhhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEE
Q 044176          136 DLRSLGLNSNKLRGS-FPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRII  214 (362)
Q Consensus       136 ~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L  214 (362)
                      .++++++++..++.. ....+..+.+|+.|.+.++.+.+-+...+.+-.+|+.++++.+.-.........+..|+.|.+|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            366666666655521 2234455566666666666665555555556666666666655332222222233455556666


Q ss_pred             eccCCcccCCCchhHHhh-hhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCcc-cCCCc
Q 044176          215 DLSHNEFTGFLPRWIFVS-LETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQ-FQGEI  292 (362)
Q Consensus       215 ~l~~n~~~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~  292 (362)
                      +++.+....+.-.....+ -+.+..+.++++.....               ......+..-+|+|..|||++|. ++...
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~---------------~sh~~tL~~rcp~l~~LDLSD~v~l~~~~  330 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQ---------------KSHLSTLVRRCPNLVHLDLSDSVMLKNDC  330 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhh---------------hhHHHHHHHhCCceeeeccccccccCchH
Confidence            665555432221111111 12333444443321111               11112223337888888888874 45445


Q ss_pred             chhhcCCCCCcEEEccCCcCccCchhh---hhcCCCcCEEEccCC
Q 044176          293 PQVLGDFKSLIVLNLSHNGLTGSIPVS---FANMIVLESLDLSSN  334 (362)
Q Consensus       293 ~~~~~~~~~L~~L~l~~n~i~~~~~~~---~~~~~~L~~L~l~~n  334 (362)
                      ...+-+++-|+.|.++.|+..  .|..   +...|+|.+||+.++
T Consensus       331 ~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  331 FQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             HHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence            556777888888888888753  4444   466788888888775

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.71  E-value=7.5e-10  Score=91.18  Aligned_cols=223  Identities=17%  Similarity=0.167  Sum_probs=147.7

Q ss_pred             cEEEcccccccCcchhhhhcCCCCccEEeccCCcccCC-Cchhhhc-CCCCcEEEccCCCCCCCcc-hhccCCCCCCeEE
Q 044176          113 TILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGS-FPRYLAD-CTGLEVVNVGNNMIGDTFP-SWLGSLPGLKILV  189 (362)
Q Consensus       113 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~-l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~  189 (362)
                      +++|+.+-++.......+..  .....+.+........ ..+.+.- -..|+++|+++..++.... ..+..|.+|+.+.
T Consensus       139 ~~lDl~~r~i~p~~l~~l~~--rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lS  216 (419)
T KOG2120|consen  139 QTLDLTGRNIHPDVLGRLLS--RGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLS  216 (419)
T ss_pred             eeeccCCCccChhHHHHHHh--CCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhcc
Confidence            55666665554111122221  2455555554332211 1122222 2469999999988754322 3456789999999


Q ss_pred             ccCCcCCCccccccccccCCcccEEeccCCc-ccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcc
Q 044176          190 LRSNRFYGPLCEVNIMLPFEALRIIDLSHNE-FTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRD  268 (362)
Q Consensus       190 l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (362)
                      +.++++.+.+.  ..+++..+|+.++++.+. ++......++..|+.|.++.+.+|..++-.                ..
T Consensus       217 lEg~~LdD~I~--~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~----------------Vt  278 (419)
T KOG2120|consen  217 LEGLRLDDPIV--NTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEK----------------VT  278 (419)
T ss_pred             ccccccCcHHH--HHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchh----------------hh
Confidence            99999987443  345788899999999854 666666778999999999999998754322                12


Q ss_pred             hHhhhhcccccEEeccCccc---CCCcchhhcCCCCCcEEEccCC-cCccCchhhhhcCCCcCEEEccCCcccccCchh-
Q 044176          269 LVLKRIITIFTTIDLSSNQF---QGEIPQVLGDFKSLIVLNLSHN-GLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQ-  343 (362)
Q Consensus       269 ~~~~~~~~~L~~L~l~~n~~---~~~~~~~~~~~~~L~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-  343 (362)
                      ..+....++++.|+++++.-   ...+..-...+++|..|+|+.| .+++.....|.+++.|++|.++.|+.  ++|+. 
T Consensus       279 v~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~  356 (419)
T KOG2120|consen  279 VAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETL  356 (419)
T ss_pred             HHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHe
Confidence            23334467899999999742   2123333467899999999987 46666677899999999999999874  45665 


Q ss_pred             --hhhhHhhhccCCCc
Q 044176          344 --FVDAEICSSFARPD  357 (362)
Q Consensus       344 --~~~l~~L~~l~~~~  357 (362)
                        +.+.|.|.+|++..
T Consensus       357 ~~l~s~psl~yLdv~g  372 (419)
T KOG2120|consen  357 LELNSKPSLVYLDVFG  372 (419)
T ss_pred             eeeccCcceEEEEecc
Confidence              44556677775543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.70  E-value=6.2e-09  Score=85.87  Aligned_cols=200  Identities=19%  Similarity=0.243  Sum_probs=123.6

Q ss_pred             CCCCcEEEcCCCccccccc-----CCcCCCcEEEccCCcCCC---CCCCCCCCccEEEccCccccc-CCcccccCCCCCC
Q 044176           18 WKSLTYLDISNNFLTQIEQ-----HPWKNITVLNLQNNTIQG---TILVPPPSTRAFLFSNNKLFG-QIPPSIYSLSSLE   88 (362)
Q Consensus        18 ~~~L~~L~ls~~~i~~~~~-----~~~~~L~~L~l~~n~~~~---~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~   88 (362)
                      ++.++.+|+.+|.|.++..     +.+|.|+.|+++.|++..   ..+....+|+++.+.+..+.- .....+..++.++
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            4667777777777777765     567777777777777653   223446677777777665541 2223455677777


Q ss_pred             EEEcccCcccc--cCCCCcccccccccEEEcccccccC-cchhhhhcCCCCccEEeccCCcccCCC-chhhhcCCCCcEE
Q 044176           89 YISLSHNNLSG--TIPPCLGNFSTQLTILHLNNNYLQG-RIPDAFANGSCDLRSLGLNSNKLRGSF-PRYLADCTGLEVV  164 (362)
Q Consensus        89 ~L~L~~~~~~~--~~~~~l~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L  164 (362)
                      +|.++.|.+..  .-........+.++++...+|.... .--..+....|++..+.+..|++.+.. .+.+..++.+..|
T Consensus       150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L  229 (418)
T KOG2982|consen  150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL  229 (418)
T ss_pred             hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence            77777773331  1112222233456666665554320 001122334478888888888776432 3456677888889


Q ss_pred             EccCCCCCCCc-chhccCCCCCCeEEccCCcCCCcc----ccccccccCCcccEEecc
Q 044176          165 NVGNNMIGDTF-PSWLGSLPGLKILVLRSNRFYGPL----CEVNIMLPFEALRIIDLS  217 (362)
Q Consensus       165 ~l~~~~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~----~~~~~~~~~~~L~~L~l~  217 (362)
                      +++.+.+.++. .+++.+++.|+.|.+.++++.+..    ....-++++++++.|+=+
T Consensus       230 nL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs  287 (418)
T KOG2982|consen  230 NLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS  287 (418)
T ss_pred             hhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence            99999885542 356788999999999999876532    223345677888887633

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.55  E-value=1.3e-08  Score=92.77  Aligned_cols=102  Identities=29%  Similarity=0.340  Sum_probs=80.1

Q ss_pred             CCCCcEEEcCCCccccccc--CCcCCCcEEEccCCcCCCCC-CCCCCCccEEEccCcccccCCcccccCCCCCCEEEccc
Q 044176           18 WKSLTYLDISNNFLTQIEQ--HPWKNITVLNLQNNTIQGTI-LVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSH   94 (362)
Q Consensus        18 ~~~L~~L~ls~~~i~~~~~--~~~~~L~~L~l~~n~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~   94 (362)
                      +++++.+++.+|.|+.+..  ..+++|+.|++++|.|+... ...++.|+.|++++|.+...  ..+..++.|+.+++++
T Consensus        94 ~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~  171 (414)
T KOG0531|consen   94 LKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSY  171 (414)
T ss_pred             ccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhc--cCCccchhhhcccCCc
Confidence            4889999999999998887  57899999999999988754 44477799999999998754  4566688999999999


Q ss_pred             CcccccCCCC-cccccccccEEEccccccc
Q 044176           95 NNLSGTIPPC-LGNFSTQLTILHLNNNYLQ  123 (362)
Q Consensus        95 ~~~~~~~~~~-l~~~~~~L~~L~l~~~~~~  123 (362)
                      |++. .+... ...+ ..++.+++.+|.+.
T Consensus       172 n~i~-~ie~~~~~~~-~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  172 NRIV-DIENDELSEL-ISLEELDLGGNSIR  199 (414)
T ss_pred             chhh-hhhhhhhhhc-cchHHHhccCCchh
Confidence            9988 44442 2344 57888888888765

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.49  E-value=2e-08  Score=91.61  Aligned_cols=192  Identities=24%  Similarity=0.273  Sum_probs=137.0

Q ss_pred             CCCCcEEEcCCCccccccc--CCcCCCcEEEccCCcCCCCCC--CCCCCccEEEccCcccccCCcccccCCCCCCEEEcc
Q 044176           18 WKSLTYLDISNNFLTQIEQ--HPWKNITVLNLQNNTIQGTIL--VPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLS   93 (362)
Q Consensus        18 ~~~L~~L~ls~~~i~~~~~--~~~~~L~~L~l~~n~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~   93 (362)
                      +..++.+.+..+.|+.+..  ..+++|+.+++.+|.|.....  ..+++|++|++++|.|...  ..+..+..|+.|+++
T Consensus        71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~  148 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLS  148 (414)
T ss_pred             hHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccc--cchhhccchhhheec
Confidence            4778888899998888333  678999999999999987655  5599999999999999865  456778889999999


Q ss_pred             cCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCC
Q 044176           94 HNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGD  173 (362)
Q Consensus        94 ~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  173 (362)
                      +|.+. .+.. +..+ ..|+.+++++|++....+.. ...+..++.+++.+|.+..  ...+..+..+..+++..|.+..
T Consensus       149 ~N~i~-~~~~-~~~l-~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~~  222 (414)
T KOG0531|consen  149 GNLIS-DISG-LESL-KSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKISK  222 (414)
T ss_pred             cCcch-hccC-Cccc-hhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHHhhccccccee
Confidence            99997 4443 3334 68999999999987433311 2344789999999998863  2344445555555777776643


Q ss_pred             CcchhccCCC--CCCeEEccCCcCCCccccccccccCCcccEEeccCCccc
Q 044176          174 TFPSWLGSLP--GLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFT  222 (362)
Q Consensus       174 ~~~~~~~~~~--~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  222 (362)
                      ..+  +....  .|+.+++++|++....   ..+..+..+..+++..+.+.
T Consensus       223 ~~~--l~~~~~~~L~~l~l~~n~i~~~~---~~~~~~~~l~~l~~~~n~~~  268 (414)
T KOG0531|consen  223 LEG--LNELVMLHLRELYLSGNRISRSP---EGLENLKNLPVLDLSSNRIS  268 (414)
T ss_pred             ccC--cccchhHHHHHHhcccCcccccc---ccccccccccccchhhcccc
Confidence            321  22223  3788888888776422   22355677788888877765

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.47  E-value=6e-08  Score=79.18  Aligned_cols=44  Identities=34%  Similarity=0.493  Sum_probs=26.4

Q ss_pred             cccCCCCCCEEEcccCcccccCCCCccccc---ccccEEEccccccc
Q 044176           80 SIYSLSSLEYISLSHNNLSGTIPPCLGNFS---TQLTILHLNNNYLQ  123 (362)
Q Consensus        80 ~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~---~~L~~L~l~~~~~~  123 (362)
                      ++.+|++|+..+||+|.+....|+.+..+.   ..|.+|.+++|.+.
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG  133 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG  133 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence            455677777777777777655554433321   45666666666553

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.40  E-value=1.7e-07  Score=76.56  Aligned_cols=88  Identities=23%  Similarity=0.387  Sum_probs=42.7

Q ss_pred             CCccEEeccCCcccCCCchhh----hcCCCCcEEEccCCCCCCCcchhcc-------------CCCCCCeEEccCCcCCC
Q 044176          135 CDLRSLGLNSNKLRGSFPRYL----ADCTGLEVVNVGNNMIGDTFPSWLG-------------SLPGLKILVLRSNRFYG  197 (362)
Q Consensus       135 ~~L~~L~l~~~~~~~~~~~~~----~~l~~L~~L~l~~~~~~~~~~~~~~-------------~~~~L~~L~l~~n~~~~  197 (362)
                      |.|++.++++|.+....|+.+    .+-+.|++|.+++|.+..+...-++             .-|.|+.+....|++..
T Consensus        92 p~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen  171 (388)
T COG5238          92 PRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN  171 (388)
T ss_pred             CcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc
Confidence            566666666666654444332    3445666666666655322111111             23556666666665543


Q ss_pred             cccccc--ccccCCcccEEeccCCccc
Q 044176          198 PLCEVN--IMLPFEALRIIDLSHNEFT  222 (362)
Q Consensus       198 ~~~~~~--~~~~~~~L~~L~l~~n~~~  222 (362)
                      ......  .+..-..|+++.+..|.|.
T Consensus       172 gs~~~~a~~l~sh~~lk~vki~qNgIr  198 (388)
T COG5238         172 GSKELSAALLESHENLKEVKIQQNGIR  198 (388)
T ss_pred             CcHHHHHHHHHhhcCceeEEeeecCcC
Confidence            221111  1112235666666666655

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.35  E-value=9.1e-08  Score=88.26  Aligned_cols=126  Identities=21%  Similarity=0.190  Sum_probs=87.6

Q ss_pred             cccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchh-ccCCCCCCeEE
Q 044176          111 QLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSW-LGSLPGLKILV  189 (362)
Q Consensus       111 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~  189 (362)
                      .|...+.++|++. .+...+. .++.++.|++++|+++..  ..+..+++|++||++.|.+.. +|.. ...+ +|+.|.
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLq-ll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc-~L~~L~  238 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQ-LLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRH-VPQLSMVGC-KLQLLN  238 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHH-HHHHhhhhccchhhhhhh--HHHHhcccccccccccchhcc-ccccchhhh-hheeee
Confidence            4566666666665 4444444 347888888888888743  377788888888888888743 3332 2233 488888


Q ss_pred             ccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCc
Q 044176          190 LRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDG  246 (362)
Q Consensus       190 l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~  246 (362)
                      +.+|.++.    ...+.++++|+.||+++|-+.+......+..+..|..|.+.++..
T Consensus       239 lrnN~l~t----L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  239 LRNNALTT----LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             ecccHHHh----hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            88887764    223467888999999999887666555677777888888877754

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.33  E-value=1.3e-07  Score=78.27  Aligned_cols=77  Identities=22%  Similarity=0.280  Sum_probs=36.0

Q ss_pred             CcEEEcCCCccccccc-----CCcCCCcEEEccCCcCCCC-----CCCCCCCccEEEccCcccccCCcccccCCCCCCEE
Q 044176           21 LTYLDISNNFLTQIEQ-----HPWKNITVLNLQNNTIQGT-----ILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYI   90 (362)
Q Consensus        21 L~~L~ls~~~i~~~~~-----~~~~~L~~L~l~~n~~~~~-----~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L   90 (362)
                      +..+.+.++.|-....     ..+..++.+|+.+|.|.+.     ....+|.|++|+++.|++...+-..-....+|++|
T Consensus        47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l  126 (418)
T KOG2982|consen   47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL  126 (418)
T ss_pred             hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence            3344444444444333     2345566666666666531     12335555555555555543221111234455555


Q ss_pred             EcccCcc
Q 044176           91 SLSHNNL   97 (362)
Q Consensus        91 ~L~~~~~   97 (362)
                      .|.|+.+
T Consensus       127 VLNgT~L  133 (418)
T KOG2982|consen  127 VLNGTGL  133 (418)
T ss_pred             EEcCCCC
Confidence            5555544

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.31  E-value=1.2e-07  Score=69.39  Aligned_cols=83  Identities=29%  Similarity=0.299  Sum_probs=65.6

Q ss_pred             cccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhccC
Q 044176          275 ITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFA  354 (362)
Q Consensus       275 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~  354 (362)
                      ...|+..++++|.+.+..+..-..++.++.+++++|+|. .+|..+..+++|+.|+++.|.+. ..|+.+..+.++-+| 
T Consensus        52 ~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~L-  128 (177)
T KOG4579|consen   52 GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDML-  128 (177)
T ss_pred             CceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHh-
Confidence            345788999999998665555557778999999999999 68888999999999999999998 677777665555555 


Q ss_pred             CCccccCC
Q 044176          355 RPDLYTNA  362 (362)
Q Consensus       355 ~~~l~~n~  362 (362)
                        +..+||
T Consensus       129 --ds~~na  134 (177)
T KOG4579|consen  129 --DSPENA  134 (177)
T ss_pred             --cCCCCc
Confidence              555554

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.26  E-value=1.3e-06  Score=51.49  Aligned_cols=38  Identities=39%  Similarity=0.594  Sum_probs=25.3

Q ss_pred             CCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccc
Q 044176          300 KSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHG  338 (362)
Q Consensus       300 ~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~  338 (362)
                      ++|++|++++|+|+ .+|..+.+|++|+.|++++|++++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence            35777777777777 455567777777777777777773

...

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.25  E-value=6.1e-08  Score=83.69  Aligned_cols=277  Identities=16%  Similarity=0.075  Sum_probs=148.3

Q ss_pred             CCcEEEccCCcCCCCC-----CCCCCCccEEEccCccccc-CCcccc-cCCCCCCEEEcccC-cccccCCCCcccccccc
Q 044176           41 NITVLNLQNNTIQGTI-----LVPPPSTRAFLFSNNKLFG-QIPPSI-YSLSSLEYISLSHN-NLSGTIPPCLGNFSTQL  112 (362)
Q Consensus        41 ~L~~L~l~~n~~~~~~-----~~~~~~L~~L~l~~~~~~~-~~~~~~-~~l~~L~~L~L~~~-~~~~~~~~~l~~~~~~L  112 (362)
                      .|+.|.+.++.-.+..     ...+|++++|.+.++...+ ..-..+ ..+++++++++..| .+++.....+....++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            3555655555322211     1226667777666664221 110111 23667777777663 33322223344444677


Q ss_pred             cEEEccccc-ccCcchhhhhcCCCCccEEeccCCcccCCCchhh----hcCCCCcEEEccCCC-CCCCcc-hhccCCCCC
Q 044176          113 TILHLNNNY-LQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYL----ADCTGLEVVNVGNNM-IGDTFP-SWLGSLPGL  185 (362)
Q Consensus       113 ~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~~l~~L~~L~l~~~~-~~~~~~-~~~~~~~~L  185 (362)
                      +++++++|. +++..-..+..+...++++...+|.-.  ..+.+    +.+..+..+++..|. +++... ..-..+..|
T Consensus       219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~--~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~l  296 (483)
T KOG4341|consen  219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL--ELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHAL  296 (483)
T ss_pred             HHhhhccCchhhcCcchHHhccchhhhhhhhcccccc--cHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHh
Confidence            777777765 333223344444455666666655211  11122    223445555554442 333321 112345677


Q ss_pred             CeEEccCCcCCCccccccccccCCcccEEeccCCcc-cCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeee
Q 044176          186 KILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEF-TGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTV  264 (362)
Q Consensus       186 ~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~  264 (362)
                      +.++.+++...+..+.+---.++++|+.+.+..+.- +..-...+-..+..|+.+++..+..........          
T Consensus       297 q~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~s----------  366 (483)
T KOG4341|consen  297 QVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLAS----------  366 (483)
T ss_pred             hhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhh----------
Confidence            777777764432222221224567888888877662 222223345566777777777665444332222          


Q ss_pred             cCcchHhhhhcccccEEeccCccc-CCCcc----hhhcCCCCCcEEEccCCcCc-cCchhhhhcCCCcCEEEccCCc
Q 044176          265 KGRDLVLKRIITIFTTIDLSSNQF-QGEIP----QVLGDFKSLIVLNLSHNGLT-GSIPVSFANMIVLESLDLSSNK  335 (362)
Q Consensus       265 ~~~~~~~~~~~~~L~~L~l~~n~~-~~~~~----~~~~~~~~L~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~  335 (362)
                            +...++.|+++.+++|.. +++..    ..-..+..|..+.+.++... +...+.+..++.|+.+++-+++
T Consensus       367 ------ls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  367 ------LSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             ------hccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence                  222378899999998853 44422    22245677888999988654 5556667889999999988886

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.18  E-value=3e-07  Score=84.96  Aligned_cols=178  Identities=21%  Similarity=0.182  Sum_probs=113.6

Q ss_pred             chhhhcCCCCcEEEccCCCCCCCcchhccCC-CCCCeEEccCCcCC----------CccccccccccCCcccEEeccCCc
Q 044176          152 PRYLADCTGLEVVNVGNNMIGDTFPSWLGSL-PGLKILVLRSNRFY----------GPLCEVNIMLPFEALRIIDLSHNE  220 (362)
Q Consensus       152 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~n~~~----------~~~~~~~~~~~~~~L~~L~l~~n~  220 (362)
                      |-.+..+..|++|.+.++.+.. . ..+..+ ..|++|-.. +..+          +.....   -.+..|...++++|.
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~-~-~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~ns---~~Wn~L~~a~fsyN~  175 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLST-A-KGLQELRHQLEKLICH-NSLDALRHVFASCGGDISNS---PVWNKLATASFSYNR  175 (1096)
T ss_pred             CceeccccceeeEEecCcchhh-h-hhhHHHHHhhhhhhhh-ccHHHHHHHHHHhccccccc---hhhhhHhhhhcchhh
Confidence            5567788999999999998732 1 111111 122222111 1110          111111   234567788888888


Q ss_pred             ccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCC
Q 044176          221 FTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFK  300 (362)
Q Consensus       221 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~  300 (362)
                      +. ..+. .+.-++.++.|++.++....+.                    ....+++|+.|||++|.+....--...+++
T Consensus       176 L~-~mD~-SLqll~ale~LnLshNk~~~v~--------------------~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~  233 (1096)
T KOG1859|consen  176 LV-LMDE-SLQLLPALESLNLSHNKFTKVD--------------------NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK  233 (1096)
T ss_pred             HH-hHHH-HHHHHHHhhhhccchhhhhhhH--------------------HHHhcccccccccccchhccccccchhhhh
Confidence            76 3333 3666778888888877533332                    122389999999999999844332344555


Q ss_pred             CCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhccCCCccccCC
Q 044176          301 SLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFARPDLYTNA  362 (362)
Q Consensus       301 ~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~~~~l~~n~  362 (362)
                       |+.|.+.+|.++..  ..+.++++|+.||+++|-+.+.-  .+..+..|.+|....|.||.
T Consensus       234 -L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hs--eL~pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  234 -LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHS--ELEPLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             -heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcch--hhhHHHHHHHHHHHhhcCCc
Confidence             99999999999843  66899999999999999888532  34555666666666888874

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.10  E-value=5.5e-06  Score=64.95  Aligned_cols=82  Identities=28%  Similarity=0.288  Sum_probs=34.2

Q ss_pred             cccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCC-chhhhcCCCCcEEEccCCCCCCCc---chhccCCCCCC
Q 044176          111 QLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSF-PRYLADCTGLEVVNVGNNMIGDTF---PSWLGSLPGLK  186 (362)
Q Consensus       111 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~---~~~~~~~~~L~  186 (362)
                      .|.+|.+.+|+|+ .+...+...+++|+.|.+.+|.+.... -..+..+++|+.|.+-+|.++..-   ...+..+|+|+
T Consensus        65 rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~  143 (233)
T KOG1644|consen   65 RLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLR  143 (233)
T ss_pred             ccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcce
Confidence            4444444444444 222223333344444444444433110 112334455555555555443211   11244556666


Q ss_pred             eEEccCC
Q 044176          187 ILVLRSN  193 (362)
Q Consensus       187 ~L~l~~n  193 (362)
                      .||++.-
T Consensus       144 ~LDF~kV  150 (233)
T KOG1644|consen  144 TLDFQKV  150 (233)
T ss_pred             Eeehhhh
Confidence            6665543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.10  E-value=2.7e-07  Score=67.54  Aligned_cols=83  Identities=31%  Similarity=0.361  Sum_probs=40.0

Q ss_pred             CCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEE
Q 044176           85 SSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVV  164 (362)
Q Consensus        85 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  164 (362)
                      .+|...+|++|.+. .+|+.+....+.++++++.+|.+. .+|..++.+ +.|+.++++.|.+. ..|..+..+.++..|
T Consensus        53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam-~aLr~lNl~~N~l~-~~p~vi~~L~~l~~L  128 (177)
T KOG4579|consen   53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAM-PALRSLNLRFNPLN-AEPRVIAPLIKLDML  128 (177)
T ss_pred             ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhh-HHhhhcccccCccc-cchHHHHHHHhHHHh
Confidence            34444455555555 444444333334555555555554 445554443 55555555555554 344444445555555


Q ss_pred             EccCCCC
Q 044176          165 NVGNNMI  171 (362)
Q Consensus       165 ~l~~~~~  171 (362)
                      +..+|.+
T Consensus       129 ds~~na~  135 (177)
T KOG4579|consen  129 DSPENAR  135 (177)
T ss_pred             cCCCCcc
Confidence            5444444

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.05  E-value=9e-08  Score=82.70  Aligned_cols=282  Identities=17%  Similarity=0.143  Sum_probs=147.6

Q ss_pred             CCccEEEccCcccccC--CcccccCCCCCCEEEcccCcc-cccCCCCcccccccccEEEccccc-ccCcchhhhhcCCCC
Q 044176           61 PSTRAFLFSNNKLFGQ--IPPSIYSLSSLEYISLSHNNL-SGTIPPCLGNFSTQLTILHLNNNY-LQGRIPDAFANGSCD  136 (362)
Q Consensus        61 ~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~L~~~~~-~~~~~~~l~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~  136 (362)
                      ..|+.|.++++.=.+.  .-..-.++++++.|.+.++.. ++....++.+..+++++|++..|. ++...-..+...+++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            3456666666543221  112223566777776666642 222223344444567777776643 343333445555667


Q ss_pred             ccEEeccCCc-ccCCCch-hhhcCCCCcEEEccCCCCCCC--cchhccCCCCCCeEEccCCcCCCccccccccccCCccc
Q 044176          137 LRSLGLNSNK-LRGSFPR-YLADCTGLEVVNVGNNMIGDT--FPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALR  212 (362)
Q Consensus       137 L~~L~l~~~~-~~~~~~~-~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~  212 (362)
                      |++++++.|. +++...+ ...+...++.+...+|.-.+.  +...-+.++.+..+++..|........+..-..+..|+
T Consensus       218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq  297 (483)
T KOG4341|consen  218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ  297 (483)
T ss_pred             HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence            7777777664 3332222 233445555555555532111  00111234445566665553322222222234566777


Q ss_pred             EEeccCCcc-cCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCcccC--
Q 044176          213 IIDLSHNEF-TGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQ--  289 (362)
Q Consensus       213 ~L~l~~n~~-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~--  289 (362)
                      .++.+.+.. ....-...-.++.+|+.+.+..+..+...++..                +...++.|+.+++.++...  
T Consensus       298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~----------------l~rn~~~Le~l~~e~~~~~~d  361 (483)
T KOG4341|consen  298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTM----------------LGRNCPHLERLDLEECGLITD  361 (483)
T ss_pred             hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhh----------------hhcCChhhhhhcccccceehh
Confidence            887776543 222222334455666666666665443333222                2233788999999988653  


Q ss_pred             CCcchhhcCCCCCcEEEccCCcC-ccCc----hhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhccCCCcccc
Q 044176          290 GEIPQVLGDFKSLIVLNLSHNGL-TGSI----PVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFARPDLYT  360 (362)
Q Consensus       290 ~~~~~~~~~~~~L~~L~l~~n~i-~~~~----~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~~~~l~~  360 (362)
                      +.+.+.-.+++.|+.+.+++|.. ++..    ...-..+..|..+.+++++.+..  ..+..+...+.|...++++
T Consensus       362 ~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d--~~Le~l~~c~~Leri~l~~  435 (483)
T KOG4341|consen  362 GTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITD--ATLEHLSICRNLERIELID  435 (483)
T ss_pred             hhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchH--HHHHHHhhCcccceeeeec
Confidence            22333335789999999998864 3331    12235577899999999986532  2344454545544445543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.03  E-value=1.1e-05  Score=63.34  Aligned_cols=131  Identities=22%  Similarity=0.226  Sum_probs=94.2

Q ss_pred             CCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEE
Q 044176           85 SSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVV  164 (362)
Q Consensus        85 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  164 (362)
                      ..-+++++.+.++. .+ +.++....+...+|++.|.+. . ...+. .++.|.+|.+++|+|+...|..-..++.|..|
T Consensus        19 ~~e~e~~LR~lkip-~i-enlg~~~d~~d~iDLtdNdl~-~-l~~lp-~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L   93 (233)
T KOG1644|consen   19 VRERELDLRGLKIP-VI-ENLGATLDQFDAIDLTDNDLR-K-LDNLP-HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTL   93 (233)
T ss_pred             cccccccccccccc-ch-hhccccccccceecccccchh-h-cccCC-CccccceEEecCCcceeeccchhhhccccceE
Confidence            34567788887775 22 234455467889999999875 2 22333 34899999999999996656555567889999


Q ss_pred             EccCCCCCCCc-chhccCCCCCCeEEccCCcCCCccc-cccccccCCcccEEeccCCc
Q 044176          165 NVGNNMIGDTF-PSWLGSLPGLKILVLRSNRFYGPLC-EVNIMLPFEALRIIDLSHNE  220 (362)
Q Consensus       165 ~l~~~~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~~~L~~L~l~~n~  220 (362)
                      .+.+|.+.+.. .+-+..+|+|++|.+-+|+.+...- ....+..+|+|+.||+++-.
T Consensus        94 ~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen   94 ILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             EecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            99999874331 2336689999999999998876433 23356789999999987644

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.02  E-value=6.8e-06  Score=48.46  Aligned_cols=38  Identities=34%  Similarity=0.564  Sum_probs=31.9

Q ss_pred             ccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCcc
Q 044176          276 TIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTG  314 (362)
Q Consensus       276 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~  314 (362)
                      ++|++|++++|+++ .++..++++++|+.|++++|++++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence            46899999999999 456668999999999999999984

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.98  E-value=3.9e-06  Score=80.35  Aligned_cols=154  Identities=16%  Similarity=0.187  Sum_probs=89.1

Q ss_pred             CCCCEEEcccCccc-ccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcE
Q 044176           85 SSLEYISLSHNNLS-GTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEV  163 (362)
Q Consensus        85 ~~L~~L~L~~~~~~-~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  163 (362)
                      .+|++|+++|...- ..-|..++...|.|+.|.+++-.+...--..+...+|+|..|+++++.++..  ..+..+++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            46777777765332 1233455555677777777775543221122333346777777777777633  56667777777


Q ss_pred             EEccCCCCCC-CcchhccCCCCCCeEEccCCcCCCcc--cc--ccccccCCcccEEeccCCcccCCCchhHHhhhhhhhh
Q 044176          164 VNVGNNMIGD-TFPSWLGSLPGLKILVLRSNRFYGPL--CE--VNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKN  238 (362)
Q Consensus       164 L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~--~~--~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~  238 (362)
                      |.+.+-.+.. .....+-.+++|+.||++........  ..  ...-..+|.|+.||++++.+....-+.....-++|+.
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~  279 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ  279 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence            7776655532 12223456777788887766544322  00  0112347888888888888876555555554555554


Q ss_pred             cc
Q 044176          239 VD  240 (362)
Q Consensus       239 l~  240 (362)
                      +.
T Consensus       280 i~  281 (699)
T KOG3665|consen  280 IA  281 (699)
T ss_pred             hh
Confidence            44

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.91  E-value=0.0001  Score=65.49  Aligned_cols=133  Identities=17%  Similarity=0.212  Sum_probs=67.3

Q ss_pred             CCCCcEEEcCCCcccccccCCcCCCcEEEccCCcCCCCCCCC-CCCccEEEccCc-ccccCCcccccCCCCCCEEEcccC
Q 044176           18 WKSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVP-PPSTRAFLFSNN-KLFGQIPPSIYSLSSLEYISLSHN   95 (362)
Q Consensus        18 ~~~L~~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~L~~~   95 (362)
                      +++++.|++++|.++.+| ..-.+|+.|.++++.--...+.. +++|+.|.+++| .+. .+|      ..|+.|+++++
T Consensus        51 ~~~l~~L~Is~c~L~sLP-~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~-sLP------~sLe~L~L~~n  122 (426)
T PRK15386         51 ARASGRLYIKDCDIESLP-VLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEIS-GLP------ESVRSLEIKGS  122 (426)
T ss_pred             hcCCCEEEeCCCCCcccC-CCCCCCcEEEccCCCCcccCCchhhhhhhheEccCccccc-ccc------cccceEEeCCC
Confidence            466777777777777776 22235777777664322222222 456777777766 333 233      24556666554


Q ss_pred             cccccCCCCcccccccccEEEccccccc--CcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCC
Q 044176           96 NLSGTIPPCLGNFSTQLTILHLNNNYLQ--GRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNN  169 (362)
Q Consensus        96 ~~~~~~~~~l~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  169 (362)
                      ... .    +..++++|+.|.+.+++..  ...|..+   -++|++|.+++|... ..|..+.  .+|+.|+++.+
T Consensus       123 ~~~-~----L~~LPssLk~L~I~~~n~~~~~~lp~~L---PsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        123 ATD-S----IKNVPNGLTSLSINSYNPENQARIDNLI---SPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             CCc-c----cccCcchHhheecccccccccccccccc---CCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence            432 1    2233345666665432211  0112111   135777777776644 2333222  46666766554

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.91  E-value=6e-06  Score=79.09  Aligned_cols=159  Identities=18%  Similarity=0.275  Sum_probs=108.7

Q ss_pred             ccccEEEcccccc-cCcchhhhhcCCCCccEEeccCCcccCC-CchhhhcCCCCcEEEccCCCCCCCcchhccCCCCCCe
Q 044176          110 TQLTILHLNNNYL-QGRIPDAFANGSCDLRSLGLNSNKLRGS-FPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKI  187 (362)
Q Consensus       110 ~~L~~L~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  187 (362)
                      .+|++|++++... ...-|..+..++|+|+.|.+.+-.+... +.....++++|..||++++.+...  ..++++++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            5799999998653 3345667788889999999999776532 344566899999999999998654  56889999999


Q ss_pred             EEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCc
Q 044176          188 LVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGR  267 (362)
Q Consensus       188 L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (362)
                      |.+.+-.+.. ......+..+++|+.||+|........ ....      +++.+.                         
T Consensus       200 L~mrnLe~e~-~~~l~~LF~L~~L~vLDIS~~~~~~~~-~ii~------qYlec~-------------------------  246 (699)
T KOG3665|consen  200 LSMRNLEFES-YQDLIDLFNLKKLRVLDISRDKNNDDT-KIIE------QYLECG-------------------------  246 (699)
T ss_pred             HhccCCCCCc-hhhHHHHhcccCCCeeeccccccccch-HHHH------HHHHhc-------------------------
Confidence            9988776654 223335577899999999987654222 1100      111111                         


Q ss_pred             chHhhhhcccccEEeccCcccCCCcchh-hcCCCCCcEEEcc
Q 044176          268 DLVLKRIITIFTTIDLSSNQFQGEIPQV-LGDFKSLIVLNLS  308 (362)
Q Consensus       268 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~~~~L~~L~l~  308 (362)
                           ..+|.|+.||.++..+++..-+. +...++|+.+...
T Consensus       247 -----~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~  283 (699)
T KOG3665|consen  247 -----MVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAAL  283 (699)
T ss_pred             -----ccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhh
Confidence                 11788999999988887654332 3344555555443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.81  E-value=0.00017  Score=64.13  Aligned_cols=75  Identities=12%  Similarity=0.264  Sum_probs=42.8

Q ss_pred             ccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCC-cccCCCchhhhcCC
Q 044176           81 IYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSN-KLRGSFPRYLADCT  159 (362)
Q Consensus        81 ~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~l~  159 (362)
                      +..+.+++.|++++|.++ .+|    .++++|+.|.+++|.-...+|..+.   ++|++|.+++| .+. .+|      .
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP----~LP~sLtsL~Lsnc~nLtsLP~~LP---~nLe~L~Ls~Cs~L~-sLP------~  112 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLP----VLPNELTEITIENCNNLTTLPGSIP---EGLEKLTVCHCPEIS-GLP------E  112 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccC----CCCCCCcEEEccCCCCcccCCchhh---hhhhheEccCccccc-ccc------c
Confidence            334667777777777776 566    2334677777776543334554432   46777777776 333 233      2


Q ss_pred             CCcEEEccCCC
Q 044176          160 GLEVVNVGNNM  170 (362)
Q Consensus       160 ~L~~L~l~~~~  170 (362)
                      .|+.|++..+.
T Consensus       113 sLe~L~L~~n~  123 (426)
T PRK15386        113 SVRSLEIKGSA  123 (426)
T ss_pred             ccceEEeCCCC
Confidence            45556655443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.56  E-value=8.4e-05  Score=60.89  Aligned_cols=86  Identities=22%  Similarity=0.223  Sum_probs=63.5

Q ss_pred             cccccEEeccCc--ccCCCcchhhcCCCCCcEEEccCCcCcc-CchhhhhcCCCcCEEEccCCcccccC---chhhhhhH
Q 044176          275 ITIFTTIDLSSN--QFQGEIPQVLGDFKSLIVLNLSHNGLTG-SIPVSFANMIVLESLDLSSNKLHGRI---PEQFVDAE  348 (362)
Q Consensus       275 ~~~L~~L~l~~n--~~~~~~~~~~~~~~~L~~L~l~~n~i~~-~~~~~~~~~~~L~~L~l~~n~~~~~~---~~~~~~l~  348 (362)
                      +++|+.|.+++|  ++...++.....+++|+.+++++|+|.. .-...+..++.|..||+.+|..++..   ...|.-++
T Consensus        64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~  143 (260)
T KOG2739|consen   64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLP  143 (260)
T ss_pred             cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhh
Confidence            678999999999  6665555555677999999999999873 11233566778889999999877521   12477788


Q ss_pred             hhhccCCCcccc
Q 044176          349 ICSSFARPDLYT  360 (362)
Q Consensus       349 ~L~~l~~~~l~~  360 (362)
                      +|++++.-+.-+
T Consensus       144 ~L~~LD~~dv~~  155 (260)
T KOG2739|consen  144 SLKYLDGCDVDG  155 (260)
T ss_pred             hhccccccccCC
Confidence            999888776654

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.44  E-value=0.00044  Score=51.88  Aligned_cols=40  Identities=15%  Similarity=0.276  Sum_probs=21.2

Q ss_pred             cCCccccccCCCCcEEEcCCCcccccccC---CcCCCcEEEccC
Q 044176            9 RISKSDSQRWKSLTYLDISNNFLTQIEQH---PWKNITVLNLQN   49 (362)
Q Consensus         9 ~~~~~~~~~~~~L~~L~ls~~~i~~~~~~---~~~~L~~L~l~~   49 (362)
                      .|+..+|..+.+|+.+.+.. .++.++..   .+++++.+.+..
T Consensus         2 ~i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~   44 (129)
T PF13306_consen    2 SIGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPN   44 (129)
T ss_dssp             EE-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESS
T ss_pred             EECHHHHhCCCCCCEEEECC-CeeEeChhhcccccccccccccc
Confidence            57788888878999998875 46666663   334566666654

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.41  E-value=0.00057  Score=51.28  Aligned_cols=59  Identities=15%  Similarity=0.134  Sum_probs=21.4

Q ss_pred             CCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcc
Q 044176           57 LVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLN  118 (362)
Q Consensus        57 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~  118 (362)
                      +..+++|+.+.+.. .+..+...+|.++.+|+.+.+.++ +. .++...+...+.++.+.+.
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~   66 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFP   66 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEET
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeeccccccccccc
Confidence            33344455555443 233333444555555555555443 33 3333333332345555553

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.07  E-value=0.00032  Score=57.59  Aligned_cols=83  Identities=18%  Similarity=0.214  Sum_probs=61.3

Q ss_pred             cccccEEeccCcccCCCcchhhcCCCCCcEEEccCC--cCccCchhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhc
Q 044176          275 ITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHN--GLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSS  352 (362)
Q Consensus       275 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n--~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  352 (362)
                      ...++.+++.+..++..  ..+..+++|+.|.++.|  .+...++.....+|+|+++++++|++..  +..+..++.+.-
T Consensus        42 ~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~n  117 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELEN  117 (260)
T ss_pred             ccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcc
Confidence            45677777777776522  23567789999999999  6666666667778999999999999984  555666666666


Q ss_pred             cCCCccccC
Q 044176          353 FARPDLYTN  361 (362)
Q Consensus       353 l~~~~l~~n  361 (362)
                      |...+++++
T Consensus       118 L~~Ldl~n~  126 (260)
T KOG2739|consen  118 LKSLDLFNC  126 (260)
T ss_pred             hhhhhcccC
Confidence            666677654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.85  E-value=3.1e-05  Score=63.88  Aligned_cols=82  Identities=20%  Similarity=0.148  Sum_probs=57.6

Q ss_pred             CCCCcEEEcCCCccccccc-CCcCCCcEEEccCCcCCCCC-CCCCCCccEEEccCcccccCC-cccccCCCCCCEEEccc
Q 044176           18 WKSLTYLDISNNFLTQIEQ-HPWKNITVLNLQNNTIQGTI-LVPPPSTRAFLFSNNKLFGQI-PPSIYSLSSLEYISLSH   94 (362)
Q Consensus        18 ~~~L~~L~ls~~~i~~~~~-~~~~~L~~L~l~~n~~~~~~-~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~L~~   94 (362)
                      +.++++|++.++.+.++.. ..++.|++|.|+=|.|+... +..+++|++|.|+.|.|...- -..+.++++|+.|.|..
T Consensus        18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E   97 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE   97 (388)
T ss_pred             HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence            4678899999999998877 67888888888888877644 333777777777777665321 12355667777777766


Q ss_pred             Ccccc
Q 044176           95 NNLSG   99 (362)
Q Consensus        95 ~~~~~   99 (362)
                      |.-.+
T Consensus        98 NPCc~  102 (388)
T KOG2123|consen   98 NPCCG  102 (388)
T ss_pred             CCccc
Confidence            65543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.71  E-value=0.00045  Score=64.58  Aligned_cols=37  Identities=22%  Similarity=0.191  Sum_probs=15.8

Q ss_pred             ccccEEEccccc-ccCcchhhhhcCCCCccEEeccCCc
Q 044176          110 TQLTILHLNNNY-LQGRIPDAFANGSCDLRSLGLNSNK  146 (362)
Q Consensus       110 ~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~  146 (362)
                      .+|+.++++++. +++..-..+...+++|++|.+.+|.
T Consensus       243 ~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~  280 (482)
T KOG1947|consen  243 RKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCS  280 (482)
T ss_pred             CCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCC
Confidence            344455555444 3333333333333445555544443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.55  E-value=0.00062  Score=63.62  Aligned_cols=172  Identities=18%  Similarity=0.098  Sum_probs=89.3

Q ss_pred             cCCCcEEEccCC-cCCCCC----CCCCCCccEEEccCc-ccccCC----cccccCCCCCCEEEcccCc-ccccCCCCccc
Q 044176           39 WKNITVLNLQNN-TIQGTI----LVPPPSTRAFLFSNN-KLFGQI----PPSIYSLSSLEYISLSHNN-LSGTIPPCLGN  107 (362)
Q Consensus        39 ~~~L~~L~l~~n-~~~~~~----~~~~~~L~~L~l~~~-~~~~~~----~~~~~~l~~L~~L~L~~~~-~~~~~~~~l~~  107 (362)
                      ++.|+.+.+..+ .+....    ....+.|+.|+++++ ......    ......+++|+.|+++++. +++..-..+..
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            455666655544 222211    222677777777652 111111    1223446788888888887 55333333444


Q ss_pred             ccccccEEEccccc-ccCcchhhhhcCCCCccEEeccCCcccCC--CchhhhcCCCCcEEEccCCCCCCCcchhccCCCC
Q 044176          108 FSTQLTILHLNNNY-LQGRIPDAFANGSCDLRSLGLNSNKLRGS--FPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPG  184 (362)
Q Consensus       108 ~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  184 (362)
                      ..++|++|.+.+|. +++..-..+...++.|++|++++|.....  ......++++++.+.+....          .++.
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~----------~c~~  336 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN----------GCPS  336 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC----------CCcc
Confidence            33678888877776 55555555666667889999888764311  12223335555554433221          1333


Q ss_pred             CCeEEccCCcCCC-ccccccccccCCcccEEeccCCc
Q 044176          185 LKILVLRSNRFYG-PLCEVNIMLPFEALRIIDLSHNE  220 (362)
Q Consensus       185 L~~L~l~~n~~~~-~~~~~~~~~~~~~L~~L~l~~n~  220 (362)
                      ++.+.+....... ..........+++++.+.+.++.
T Consensus       337 l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~  373 (482)
T KOG1947|consen  337 LTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG  373 (482)
T ss_pred             HHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh
Confidence            4444443332211 01112223566777777777666

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.53  E-value=0.00019  Score=59.43  Aligned_cols=100  Identities=23%  Similarity=0.262  Sum_probs=56.6

Q ss_pred             cccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCc-chhccCCCCCCeEE
Q 044176          111 QLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTF-PSWLGSLPGLKILV  189 (362)
Q Consensus       111 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~  189 (362)
                      +.+.|++.+|.+.+   ..+...|+.|+.|.++.|.|++.  ..+..+++|+.|++..|.+.+.. ...+.++|+|+.|.
T Consensus        20 ~vkKLNcwg~~L~D---Isic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDD---ISICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HhhhhcccCCCccH---HHHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            45566666666542   22233346677777777766532  34556667777777666664321 12355677777777


Q ss_pred             ccCCcCCCcccc---ccccccCCcccEEe
Q 044176          190 LRSNRFYGPLCE---VNIMLPFEALRIID  215 (362)
Q Consensus       190 l~~n~~~~~~~~---~~~~~~~~~L~~L~  215 (362)
                      |..|+..+....   ...+..+|+|+.||
T Consensus        95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hccCCcccccchhHHHHHHHHcccchhcc
Confidence            777766543322   12344566666665

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.53  E-value=0.0013  Score=32.21  Aligned_cols=21  Identities=52%  Similarity=0.748  Sum_probs=14.3

Q ss_pred             CcCEEEccCCcccccCchhhhh
Q 044176          325 VLESLDLSSNKLHGRIPEQFVD  346 (362)
Q Consensus       325 ~L~~L~l~~n~~~~~~~~~~~~  346 (362)
                      +|++||+++|+++ .+|+.|.+
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            4677777777777 56665554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.38  E-value=0.01  Score=28.91  Aligned_cols=18  Identities=50%  Similarity=0.696  Sum_probs=13.6

Q ss_pred             CCcEEEcCCCcccccccC
Q 044176           20 SLTYLDISNNFLTQIEQH   37 (362)
Q Consensus        20 ~L~~L~ls~~~i~~~~~~   37 (362)
                      +|+.|++++|+|+.+|+.
T Consensus         1 ~L~~Ldls~n~l~~ip~~   18 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSS   18 (22)
T ss_dssp             TESEEEETSSEESEEGTT
T ss_pred             CccEEECCCCcCEeCChh
Confidence            477888888888877664

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.31  E-value=0.0059  Score=48.37  Aligned_cols=82  Identities=18%  Similarity=0.116  Sum_probs=51.4

Q ss_pred             cccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCc-hhhh-hcCCCcCEEEccCCc-ccccCchhhhhhHhhhcc
Q 044176          277 IFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSI-PVSF-ANMIVLESLDLSSNK-LHGRIPEQFVDAEICSSF  353 (362)
Q Consensus       277 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~-~~~~-~~~~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~l  353 (362)
                      .++.+|-+++.|..+.-+-+..++.++.|.+.+|.-.+.. .+.+ .-.++|+.|++++|. ||+..-..+..+++|+-|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            3677777777776666666677777777777777543221 1112 134678888888774 776666666666666666


Q ss_pred             CCCcc
Q 044176          354 ARPDL  358 (362)
Q Consensus       354 ~~~~l  358 (362)
                      .+.++
T Consensus       182 ~l~~l  186 (221)
T KOG3864|consen  182 HLYDL  186 (221)
T ss_pred             HhcCc
Confidence            55444

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.95  E-value=0.018  Score=26.00  Aligned_cols=17  Identities=47%  Similarity=0.575  Sum_probs=8.6

Q ss_pred             CCCcEEEcCCCcccccc
Q 044176           19 KSLTYLDISNNFLTQIE   35 (362)
Q Consensus        19 ~~L~~L~ls~~~i~~~~   35 (362)
                      ++|+.|++++|+++.+|
T Consensus         1 ~~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             TT-SEEEETSS--SSE-
T ss_pred             CccCEEECCCCCCCCCc
Confidence            35677777777766543

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.76  E-value=0.00079  Score=62.03  Aligned_cols=64  Identities=30%  Similarity=0.335  Sum_probs=45.4

Q ss_pred             ccEEeccCcccCCCc----chhhcCC-CCCcEEEccCCcCcc----CchhhhhcCCCcCEEEccCCcccccCc
Q 044176          278 FTTIDLSSNQFQGEI----PQVLGDF-KSLIVLNLSHNGLTG----SIPVSFANMIVLESLDLSSNKLHGRIP  341 (362)
Q Consensus       278 L~~L~l~~n~~~~~~----~~~~~~~-~~L~~L~l~~n~i~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~  341 (362)
                      +..+++..|++.+..    ...+..+ ..++.++++.|.+++    .+++.+..++.++.+.++.|.+++...
T Consensus       235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~  307 (478)
T KOG4308|consen  235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGV  307 (478)
T ss_pred             hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHH
Confidence            556888888886542    3344455 677889999998874    344556777888999999988886433

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.75  E-value=0.00047  Score=63.45  Aligned_cols=62  Identities=26%  Similarity=0.198  Sum_probs=43.5

Q ss_pred             ccccEEeccCcccCCCc----chhhcCCCCCcEEEccCCcCccCc----hhhhhcCCCcCEEEccCCccc
Q 044176          276 TIFTTIDLSSNQFQGEI----PQVLGDFKSLIVLNLSHNGLTGSI----PVSFANMIVLESLDLSSNKLH  337 (362)
Q Consensus       276 ~~L~~L~l~~n~~~~~~----~~~~~~~~~L~~L~l~~n~i~~~~----~~~~~~~~~L~~L~l~~n~~~  337 (362)
                      +.++.+++..|.+++..    +..+..++.++++.+++|.+.+..    .+.......+.++.+.++...
T Consensus       262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~~~  331 (478)
T KOG4308|consen  262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGTGKG  331 (478)
T ss_pred             hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccccCcc
Confidence            56789999999997654    344566778999999999987532    233455566777777755443

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=94.20  E-value=0.017  Score=28.78  Aligned_cols=18  Identities=39%  Similarity=0.449  Sum_probs=9.5

Q ss_pred             CCcCEEEccCCcccccCc
Q 044176          324 IVLESLDLSSNKLHGRIP  341 (362)
Q Consensus       324 ~~L~~L~l~~n~~~~~~~  341 (362)
                      ++|++|++++|++++..+
T Consensus         2 ~~L~~L~l~~n~i~~~g~   19 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGA   19 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHH
T ss_pred             CCCCEEEccCCcCCHHHH
Confidence            556666666666665433

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.07  E-value=0.019  Score=45.57  Aligned_cols=37  Identities=24%  Similarity=0.125  Sum_probs=21.9

Q ss_pred             CCCCcEEEccCC-cCccCchhhhhcCCCcCEEEccCCc
Q 044176          299 FKSLIVLNLSHN-GLTGSIPVSFANMIVLESLDLSSNK  335 (362)
Q Consensus       299 ~~~L~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~  335 (362)
                      .++|+.|+|++| +|++.....+..+++|+.|.+.+=+
T Consensus       150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~  187 (221)
T KOG3864|consen  150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP  187 (221)
T ss_pred             ccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence            456666666665 3555555556666666666665543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.64  E-value=0.098  Score=26.54  Aligned_cols=20  Identities=40%  Similarity=0.679  Sum_probs=10.4

Q ss_pred             CCCCEEEcccCcccccCCCCc
Q 044176           85 SSLEYISLSHNNLSGTIPPCL  105 (362)
Q Consensus        85 ~~L~~L~L~~~~~~~~~~~~l  105 (362)
                      .+|++|+|++|+++ .+|...
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~   21 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPPGA   21 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHH
Confidence            34555555555555 444443

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.64  E-value=0.098  Score=26.54  Aligned_cols=20  Identities=40%  Similarity=0.679  Sum_probs=10.4

Q ss_pred             CCCCEEEcccCcccccCCCCc
Q 044176           85 SSLEYISLSHNNLSGTIPPCL  105 (362)
Q Consensus        85 ~~L~~L~L~~~~~~~~~~~~l  105 (362)
                      .+|++|+|++|+++ .+|...
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~   21 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPPGA   21 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHH
Confidence            34555555555555 444443

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=92.61  E-value=0.038  Score=27.50  Aligned_cols=18  Identities=33%  Similarity=0.361  Sum_probs=8.1

Q ss_pred             CCCcEEEccCCcCccCch
Q 044176          300 KSLIVLNLSHNGLTGSIP  317 (362)
Q Consensus       300 ~~L~~L~l~~n~i~~~~~  317 (362)
                      ++|++|+|++|+|++..+
T Consensus         2 ~~L~~L~l~~n~i~~~g~   19 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGA   19 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHH
T ss_pred             CCCCEEEccCCcCCHHHH
Confidence            445555555555554333

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.84  E-value=0.15  Score=25.87  Aligned_cols=15  Identities=47%  Similarity=0.558  Sum_probs=9.5

Q ss_pred             CCcCEEEccCCcccc
Q 044176          324 IVLESLDLSSNKLHG  338 (362)
Q Consensus       324 ~~L~~L~l~~n~~~~  338 (362)
                      ++|+.|++++|+++.
T Consensus         2 ~~L~~L~L~~N~l~~   16 (26)
T smart00370        2 PNLRELDLSNNQLSS   16 (26)
T ss_pred             CCCCEEECCCCcCCc
Confidence            456666666666663

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.84  E-value=0.15  Score=25.87  Aligned_cols=15  Identities=47%  Similarity=0.558  Sum_probs=9.5

Q ss_pred             CCcCEEEccCCcccc
Q 044176          324 IVLESLDLSSNKLHG  338 (362)
Q Consensus       324 ~~L~~L~l~~n~~~~  338 (362)
                      ++|+.|++++|+++.
T Consensus         2 ~~L~~L~L~~N~l~~   16 (26)
T smart00369        2 PNLRELDLSNNQLSS   16 (26)
T ss_pred             CCCCEEECCCCcCCc
Confidence            456666666666663

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=82.90  E-value=1.2  Score=22.62  Aligned_cols=17  Identities=41%  Similarity=0.571  Sum_probs=10.7

Q ss_pred             CCCcEEEcCCCcccccc
Q 044176           19 KSLTYLDISNNFLTQIE   35 (362)
Q Consensus        19 ~~L~~L~ls~~~i~~~~   35 (362)
                      .+|+.|+++.|.|+.+.
T Consensus         2 ~~L~~L~L~~NkI~~IE   18 (26)
T smart00365        2 TNLEELDLSQNKIKKIE   18 (26)
T ss_pred             CccCEEECCCCccceec
Confidence            46666777776665543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=81.24  E-value=0.042  Score=44.74  Aligned_cols=81  Identities=14%  Similarity=0.146  Sum_probs=41.0

Q ss_pred             CccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEe
Q 044176           62 STRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLG  141 (362)
Q Consensus        62 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  141 (362)
                      ..+.||++.|.+. ..-..|..+..+..|+++.|++. ..|....+. ..+++++...|+.. ..|..+... +.+++++
T Consensus        43 r~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~-~e~~~~~~~~n~~~-~~p~s~~k~-~~~k~~e  117 (326)
T KOG0473|consen   43 RVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQ-RETVNAASHKNNHS-QQPKSQKKE-PHPKKNE  117 (326)
T ss_pred             eeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHH-HHHHHHHhhccchh-hCCcccccc-CCcchhh
Confidence            3344444444433 12233444555555666666655 555555554 45555555555544 455555443 5555555


Q ss_pred             ccCCcc
Q 044176          142 LNSNKL  147 (362)
Q Consensus       142 l~~~~~  147 (362)
                      ..++.+
T Consensus       118 ~k~~~~  123 (326)
T KOG0473|consen  118 QKKTEF  123 (326)
T ss_pred             hccCcc
Confidence            555543

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=80.84  E-value=0.94  Score=23.42  Aligned_cols=11  Identities=55%  Similarity=0.606  Sum_probs=4.4

Q ss_pred             CcEEEccCCcC
Q 044176          302 LIVLNLSHNGL  312 (362)
Q Consensus       302 L~~L~l~~n~i  312 (362)
                      |++|+|++|.+
T Consensus         4 L~~LdL~~N~i   14 (28)
T smart00368        4 LRELDLSNNKL   14 (28)
T ss_pred             cCEEECCCCCC
Confidence            33344444433

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=80.15  E-value=0.059  Score=43.92  Aligned_cols=90  Identities=16%  Similarity=0.134  Sum_probs=61.9

Q ss_pred             cccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhc
Q 044176           78 PPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLAD  157 (362)
Q Consensus        78 ~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  157 (362)
                      ...+......+.||++.|++- .+...+..+ +.+..++++.+.+. ..|..+.+. ..+..+....|... ..|..+..
T Consensus        35 v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~-t~~~rl~~sknq~~-~~~~d~~q~-~e~~~~~~~~n~~~-~~p~s~~k  109 (326)
T KOG0473|consen   35 VREIASFKRVTVLDLSSNRLV-NLGKNFSIL-TRLVRLDLSKNQIK-FLPKDAKQQ-RETVNAASHKNNHS-QQPKSQKK  109 (326)
T ss_pred             hhhhhccceeeeehhhhhHHH-hhccchHHH-HHHHHHhccHhhHh-hChhhHHHH-HHHHHHHhhccchh-hCCccccc
Confidence            345666778888888888776 455555554 56777888877776 567666554 45666666666655 56777778


Q ss_pred             CCCCcEEEccCCCCC
Q 044176          158 CTGLEVVNVGNNMIG  172 (362)
Q Consensus       158 l~~L~~L~l~~~~~~  172 (362)
                      .+.++.++..++.+.
T Consensus       110 ~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  110 EPHPKKNEQKKTEFF  124 (326)
T ss_pred             cCCcchhhhccCcch
Confidence            888888877777653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	362
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		4e-25
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		6e-14
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		9e-06
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		5e-25
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		7e-14
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		8e-06
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		4e-07
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-04

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  112 bits (279), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 116/383 (30%), Positives = 165/383 (43%), Gaps = 71/383 (18%)
Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDIS-NNF----LTQIEQHPWKNITVLNLQNNTIQGT 55
           LS N   G + +S +    SL  LD+S NNF    L  + Q+P   +  L LQNN   G 
Sbjct: 350 LSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK 409
Query: 56  ILVPPPSTRAFLFSNNKLFGQXXXXXXXXXXXXXXXXXHNNLSGTIPPCLGNFSTQLTIL 115
           I   PP+      SN                        N LSGTIP  LG+ S +L  L
Sbjct: 410 I---PPT-----LSN-------------CSELVSLHLSFNYLSGTIPSSLGSLS-KLRDL 447
Query: 116 HLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTF 175
            L  N L+G IP         L +L L+ N L G  P  L++CT L  +++ NN +    
Sbjct: 448 KLWLNMLEGEIPQELMYVKT-LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 506
Query: 176 PSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFE-----ALRIIDLSHNEFTGFLP---- 226
           P W+G L  L IL L +N F G        +P E     +L  +DL+ N F G +P    
Sbjct: 507 PKWIGRLENLAILKLSNNSFSG-------NIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 559
Query: 227 --------------RWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLK 272
                         R++++  + MK       + L  QG      +   ++ +    +  
Sbjct: 560 KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN--RLSTRNPCNITS 617
Query: 273 RIITIFTT-----------IDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFA 321
           R+    T+           +D+S N   G IP+ +G    L +LNL HN ++GSIP    
Sbjct: 618 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG 677
Query: 322 NMIVLESLDLSSNKLHGRIPEQF 344
           ++  L  LDLSSNKL GRIP+  
Sbjct: 678 DLRGLNILDLSSNKLDGRIPQAM 700

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 75.1 bits (183), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 122/270 (45%), Gaps = 46/270 (17%)
Query: 111 QLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNM 170
           +L  L ++ N + G   D   +   +L  L ++SN      P +L DC+ L+ +++  N 
Sbjct: 179 ELKHLAISGNKISG---DVDVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNK 234
Query: 171 IGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIF 230
           +   F   + +   LK+L + SN+F GP+      LP ++L+ + L+ N+FTG +P ++ 
Sbjct: 235 LSGDFSRAISTCTELKLLNISSNQFVGPIPP----LPLKSLQYLSLAENKFTGEIPDFLS 290
Query: 231 VSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVK-------GRDLVLKRIITI--FTTI 281
            + +T+  +D  G+   +      ++     +            +L +  ++ +     +
Sbjct: 291 GACDTLTGLDLSGNH--FYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVL 348
Query: 282 DLSSNQFQGEIPQVLGDF-KSLIVLNLS--------------------------HNGLTG 314
           DLS N+F GE+P+ L +   SL+ L+LS                          +NG TG
Sbjct: 349 DLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG 408
Query: 315 SIPVSFANMIVLESLDLSSNKLHGRIPEQF 344
            IP + +N   L SL LS N L G IP   
Sbjct: 409 KIPPTLSNCSELVSLHLSFNYLSGTIPSSL 438

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 79/164 (48%), Gaps = 22/164 (13%)
Query: 179 LGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGF-LPRWIFVSLETMK 237
           LGS  GLK L + SN    P  +V+  L   +L ++DLS N  +G  +  W+        
Sbjct: 122 LGSCSGLKFLNVSSNTLDFP-GKVSGGLKLNSLEVLDLSANSISGANVVGWVL------- 173
Query: 238 NVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLG 297
                 SDG    GE  +   +++      D+ + R + +   +D+SSN F   IP  LG
Sbjct: 174 ------SDGC---GELKHL--AISGNKISGDVDVSRCVNL-EFLDVSSNNFSTGIP-FLG 220
Query: 298 DFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIP 341
           D  +L  L++S N L+G    + +    L+ L++SSN+  G IP
Sbjct: 221 DCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP 264

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  111 bits (278), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 117/383 (30%), Positives = 167/383 (43%), Gaps = 71/383 (18%)
Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDIS-NNF----LTQIEQHPWKNITVLNLQNNTIQGT 55
           LS N   G + +S +    SL  LD+S NNF    L  + Q+P   +  L LQNN   G 
Sbjct: 347 LSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK 406
Query: 56  ILVPPPSTRAFLFSNNKLFGQXXXXXXXXXXXXXXXXXHNNLSGTIPPCLGNFSTQLTIL 115
           I  P  S  + L S +  F                    N LSGTIP  LG+ S +L  L
Sbjct: 407 I-PPTLSNCSELVSLHLSF--------------------NYLSGTIPSSLGSLS-KLRDL 444
Query: 116 HLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTF 175
            L  N L+G IP         L +L L+ N L G  P  L++CT L  +++ NN +    
Sbjct: 445 KLWLNMLEGEIPQELMYVKT-LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 503
Query: 176 PSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFE-----ALRIIDLSHNEFTGFLP---- 226
           P W+G L  L IL L +N F G        +P E     +L  +DL+ N F G +P    
Sbjct: 504 PKWIGRLENLAILKLSNNSFSG-------NIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 556
Query: 227 --------------RWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLK 272
                         R++++  + MK       + L  QG      +   ++ +    +  
Sbjct: 557 KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN--RLSTRNPCNITS 614
Query: 273 RIITIFTT-----------IDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFA 321
           R+    T+           +D+S N   G IP+ +G    L +LNL HN ++GSIP    
Sbjct: 615 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG 674
Query: 322 NMIVLESLDLSSNKLHGRIPEQF 344
           ++  L  LDLSSNKL GRIP+  
Sbjct: 675 DLRGLNILDLSSNKLDGRIPQAM 697

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 74.7 bits (182), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 122/270 (45%), Gaps = 46/270 (17%)
Query: 111 QLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNM 170
           +L  L ++ N + G   D   +   +L  L ++SN      P +L DC+ L+ +++  N 
Sbjct: 176 ELKHLAISGNKISG---DVDVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNK 231
Query: 171 IGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIF 230
           +   F   + +   LK+L + SN+F GP+      LP ++L+ + L+ N+FTG +P ++ 
Sbjct: 232 LSGDFSRAISTCTELKLLNISSNQFVGPIPP----LPLKSLQYLSLAENKFTGEIPDFLS 287
Query: 231 VSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVK-------GRDLVLKRIITI--FTTI 281
            + +T+  +D  G+   +      ++     +            +L +  ++ +     +
Sbjct: 288 GACDTLTGLDLSGNH--FYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVL 345
Query: 282 DLSSNQFQGEIPQVLGDFK-SLIVLNLS--------------------------HNGLTG 314
           DLS N+F GE+P+ L +   SL+ L+LS                          +NG TG
Sbjct: 346 DLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG 405
Query: 315 SIPVSFANMIVLESLDLSSNKLHGRIPEQF 344
            IP + +N   L SL LS N L G IP   
Sbjct: 406 KIPPTLSNCSELVSLHLSFNYLSGTIPSSL 435

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 79/164 (48%), Gaps = 22/164 (13%)
Query: 179 LGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGF-LPRWIFVSLETMK 237
           LGS  GLK L + SN    P  +V+  L   +L ++DLS N  +G  +  W+        
Sbjct: 119 LGSCSGLKFLNVSSNTLDFP-GKVSGGLKLNSLEVLDLSANSISGANVVGWVL------- 170
Query: 238 NVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLG 297
                 SDG    GE  +   +++      D+ + R + +   +D+SSN F   IP  LG
Sbjct: 171 ------SDGC---GELKHL--AISGNKISGDVDVSRCVNL-EFLDVSSNNFSTGIP-FLG 217
Query: 298 DFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIP 341
           D  +L  L++S N L+G    + +    L+ L++SSN+  G IP
Sbjct: 218 DCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP 261

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 89/226 (39%), Gaps = 30/226 (13%)
Query: 95  NNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRY 154
           NNL G IPP +    TQL  L++ +  + G IPD F +    L +L  + N L G+ P  
Sbjct: 87  NNLVGPIPPAIAKL-TQLHYLYITHTNVSGAIPD-FLSQIKTLVTLDFSYNALSGTLPPS 144
Query: 155 LADCTGLEVVNVGNNMIGDTFPSWLGSLPGL-KILVLRSNRFYG--PLCEVNIMLPFEAL 211
           ++    L  +    N I    P   GS   L   + +  NR  G  P    N+ L F   
Sbjct: 145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAF--- 201
Query: 212 RIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVL 271
             +DLS N                      +G   +    +++  +  +       DL  
Sbjct: 202 --VDLSRNML--------------------EGDASVLFGSDKNTQKIHLAKNSLAFDLGK 239
Query: 272 KRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIP 317
             +      +DL +N+  G +PQ L   K L  LN+S N L G IP
Sbjct: 240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 275 ITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVL-ESLDLSS 333
           I    T+D S N   G +P  +    +L+ +    N ++G+IP S+ +   L  S+ +S 
Sbjct: 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR 183
Query: 334 NKLHGRIPEQFVD 346
           N+L G+IP  F +
Sbjct: 184 NRLTGKIPPTFAN 196

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	362
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-65
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-60
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-56
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-53
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-52
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-49
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-37
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-53
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-47
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-41
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-29
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-20
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-50
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-44
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-42
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-41
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-37
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-27
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-26
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-38
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-38
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-34
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-32
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-29
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-23
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-36
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-33
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-31
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-30
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-28
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-25
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-22
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-36
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-33
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-32
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-32
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-31
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-29
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-28
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-35
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-33
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-33
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-32
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-32
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-30
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-28
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-27
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-31
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-31
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-27
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-27
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-26
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-26
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-26
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-25
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-23
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-27
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-25
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-27
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-25
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-25
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-24
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-23
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-22
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-19
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-19
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-16
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-26
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-23
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-19
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-16
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-26
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-23
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-23
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-25
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-23
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-22
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-21
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-18
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-25
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-21
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-20
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-18
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-25
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-24
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-23
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-17
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-16
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-24
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-22
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-16
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-21
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-17
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-21
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-17
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-16
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-20
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-19
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-19
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-10
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-19
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-17
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-15
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-19
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-17
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-11
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	7e-12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	9e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-08
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	7e-08
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	5e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	7e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	7e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	4e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	9e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  218 bits (557), Expect = 9e-65
 Identities = 87/357 (24%), Positives = 131/357 (36%), Gaps = 66/357 (18%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLT-QIEQHP-----WKNITVLNLQNNTIQG 54
           L NN   G+I  + S     L  L +S N+L+  I   P        +  L L  N ++G
Sbjct: 401 LQNNGFTGKIPPTLSN-CSELVSLHLSFNYLSGTI---PSSLGSLSKLRDLKLWLNMLEG 456

Query: 55  TILVPP-----PSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFS 109
            I  P       +    +   N L G+IP  + + ++L +ISLS+N L+G IP  +G   
Sbjct: 457 EI--PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 514

Query: 110 TQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNN 169
             L IL L+NN   G IP    +    L  L LN+N   G+ P  +   +G     +  N
Sbjct: 515 -NLAILKLSNNSFSGNIPAELGDCR-SLIWLDLNTNLFNGTIPAAMFKQSGK----IAAN 568

Query: 170 MIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWI 229
            I      ++ +    K      N           +         +++   + G      
Sbjct: 569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF 628

Query: 230 FVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQ 289
                                                              +D+S N   
Sbjct: 629 -------------------------------------------DNNGSMMFLDMSYNMLS 645

Query: 290 GEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVD 346
           G IP+ +G    L +LNL HN ++GSIP    ++  L  LDLSSNKL GRIP+    
Sbjct: 646 GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 702

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  205 bits (524), Expect = 4e-60
 Identities = 95/363 (26%), Positives = 146/363 (40%), Gaps = 77/363 (21%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLT-QIEQ---HPWKNITVLNLQNNTIQGTI 56
           +S+N+  G I        KSL YL ++ N  T +I          +T L+L  N   G +
Sbjct: 254 ISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV 310

Query: 57  LVPPPST------RAFLFSNNKLFGQIPP-SIYSLSSLEYISLSHNNLSGTIPPCLGNFS 109
              PP         +   S+N   G++P  ++  +  L+ + LS N  SG +P  L N S
Sbjct: 311 ---PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS 367

Query: 110 TQLTILHLNNNYLQGRIPDAFANGSC-DLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGN 168
             L  L L++N   G I           L+ L L +N   G  P  L++C+ L  +++  
Sbjct: 368 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 427

Query: 169 NMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFE-----ALRIIDLSHNEFTG 223
           N +  T PS LGSL  L+ L L  N   G        +P E      L  + L  N+ TG
Sbjct: 428 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGE-------IPQELMYVKTLETLILDFNDLTG 480

Query: 224 FLPRWIF--VSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTI 281
            +P  +    +L                                               I
Sbjct: 481 EIPSGLSNCTNLN---------------------------------------------WI 495

Query: 282 DLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIP 341
            LS+N+  GEIP+ +G  ++L +L LS+N  +G+IP    +   L  LDL++N  +G IP
Sbjct: 496 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555

Query: 342 EQF 344
              
Sbjct: 556 AAM 558

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  195 bits (498), Expect = 2e-56
 Identities = 89/361 (24%), Positives = 137/361 (37%), Gaps = 76/361 (21%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLT-----QIEQHPWKNITVLNLQNNTIQGT 55
           LS N + G I  S       L  L +  N L      ++     K +  L L  N + G 
Sbjct: 425 LSFNYLSGTIPSSLGS-LSKLRDLKLWLNMLEGEIPQELMY--VKTLETLILDFNDLTGE 481

Query: 56  ILVPP-----PSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFST 110
           I  P       +      SNN+L G+IP  I  L +L  + LS+N+ SG IP  LG+   
Sbjct: 482 I--PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR- 538

Query: 111 QLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNM 170
            L  L LN N   G IP A        +S  + +N + G    Y+ +    +  +   N+
Sbjct: 539 SLIWLDLNTNLFNGTIPAAMFK-----QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL 593

Query: 171 IGDT--FPSWLGSLPGLKILVLRSNRFYGPL-CEVNIMLPFEALRIIDLSHNEFTGFLPR 227
           +         L  L       + S  + G      +      ++  +D+S+N  +G++P+
Sbjct: 594 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN---GSMMFLDMSYNMLSGYIPK 650

Query: 228 WI--FVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSS 285
            I     L  +                                             +L  
Sbjct: 651 EIGSMPYLFIL---------------------------------------------NLGH 665

Query: 286 NQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPE--Q 343
           N   G IP  +GD + L +L+LS N L G IP + + + +L  +DLS+N L G IPE  Q
Sbjct: 666 NDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQ 725

Query: 344 F 344
           F
Sbjct: 726 F 726

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  187 bits (478), Expect = 1e-53
 Identities = 90/358 (25%), Positives = 142/358 (39%), Gaps = 67/358 (18%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLT-QIEQHPW----KNITVLNLQNNTIQGT 55
           LSN+ I G +S    +   SLT LD+S N L+  +           +  LN+ +NT+   
Sbjct: 84  LSNSHINGSVS--GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 141

Query: 56  ILVPP----PSTRAFLFSNNKLFGQIPPSIY---SLSSLEYISLSHNNLSGTIPPCLGNF 108
             V       S      S N + G              L+++++S N +SG +   +   
Sbjct: 142 GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRC 199

Query: 109 STQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGN 168
              L  L +++N     IP    +    L+ L ++ NKL G F R ++ CT L+++N+ +
Sbjct: 200 -VNLEFLDVSSNNFSTGIP-FLGD-CSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 256

Query: 169 NMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRW 228
           N      P     L  L+ L L  N+F G +    +    + L  +DLS N F G +P +
Sbjct: 257 NQFVGPIPPL--PLKSLQYLSLAENKFTGEI-PDFLSGACDTLTGLDLSGNHFYGAVPPF 313

Query: 229 IFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQF 288
                 +   +                                        ++ LSSN F
Sbjct: 314 FG----SCSLL---------------------------------------ESLALSSNNF 330

Query: 289 QGEIP-QVLGDFKSLIVLNLSHNGLTGSIPVSFANMIV-LESLDLSSNKLHGRIPEQF 344
            GE+P   L   + L VL+LS N  +G +P S  N+   L +LDLSSN   G I    
Sbjct: 331 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 388

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  183 bits (468), Expect = 2e-52
 Identities = 89/364 (24%), Positives = 143/364 (39%), Gaps = 76/364 (20%)

Query: 1   LSNNRIRGRISKSDS-QRWKSLTYLDISNNFLTQIEQHPW----KNITVLNLQNNTIQGT 55
           LS N + G ++   S      L +L++S+N L    +        ++ VL+L  N+I G 
Sbjct: 107 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGA 166

Query: 56  ILVPP------PSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFS 109
            +V           +    S NK+ G +   +    +LE++ +S NN S  IP  LG+ S
Sbjct: 167 NVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCS 223

Query: 110 TQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNN 169
             L  L ++ N L G    A +    +L+ L ++SN+  G  P        L+ +++  N
Sbjct: 224 -ALQHLDISGNKLSGDFSRAIST-CTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAEN 279

Query: 170 MIGDTFPSWL-GSLPGLKILVLRSNRFYGPLCEVNIMLPFE-----ALRIIDLSHNEFTG 223
                 P +L G+   L  L L  N FYG +       P        L  + LS N F+G
Sbjct: 280 KFTGEIPDFLSGACDTLTGLDLSGNHFYGAV-------PPFFGSCSLLESLALSSNNFSG 332

Query: 224 FLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDL 283
            LP    + +  +                                            +DL
Sbjct: 333 ELPMDTLLKMRGL------------------------------------------KVLDL 350

Query: 284 SSNQFQGEIPQVLGDFK-SLIVLNLSHNGLTGSIPVSFANMI--VLESLDLSSNKLHGRI 340
           S N+F GE+P+ L +   SL+ L+LS N  +G I  +        L+ L L +N   G+I
Sbjct: 351 SFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI 410

Query: 341 PEQF 344
           P   
Sbjct: 411 PPTL 414

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  176 bits (448), Expect = 2e-49
 Identities = 79/343 (23%), Positives = 130/343 (37%), Gaps = 73/343 (21%)

Query: 20  SLTYLDISNNFLTQIEQH------PWKNITVLNLQNNTIQGTI--LVPPPSTRAFLFSNN 71
            +T +D+S+  L                +  L L N+ I G++       S  +   S N
Sbjct: 51  KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRN 110

Query: 72  KLFGQIPP--SIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDA 129
            L G +    S+ S S L+++++S N L        G     L +L L+ N + G     
Sbjct: 111 SLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVG 170

Query: 130 FANGSC--DLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKI 187
           +       +L+ L ++ NK+ G     ++ C  LE ++V +N      P  LG    L+ 
Sbjct: 171 WVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQH 227

Query: 188 LVLRSNRFYGPLCEVNIMLPFE-----ALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEK 242
           L +  N+  G                  L+++++S N+F G +P     SL+        
Sbjct: 228 LDISGNKLSGD-------FSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQ-------- 272

Query: 243 GSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVL-GDFKS 301
                                                 + L+ N+F GEIP  L G   +
Sbjct: 273 -------------------------------------YLSLAENKFTGEIPDFLSGACDT 295

Query: 302 LIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQF 344
           L  L+LS N   G++P  F +  +LESL LSSN   G +P   
Sbjct: 296 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDT 338

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  140 bits (356), Expect = 6e-37
 Identities = 66/293 (22%), Positives = 107/293 (36%), Gaps = 78/293 (26%)

Query: 71  NKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAF 130
           N  F  +  S+ SL+ LE + LS+++++G++       +  LT L L+ N L G +    
Sbjct: 63  NVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSA-SLTSLDLSRNSLSGPVTTLT 120

Query: 131 ANGSC-DLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILV 189
           + GSC  L+ L ++SN L                             S    L  L++L 
Sbjct: 121 SLGSCSGLKFLNVSSNTLDFPGK-----------------------VSGGLKLNSLEVLD 157

Query: 190 LRSNRFYGPL-CEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLY 248
           L +N   G       +      L+ + +S N+ +G +     V+LE              
Sbjct: 158 LSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEF------------- 204

Query: 249 MQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLS 308
                                           +D+SSN F   IP  LGD  +L  L++S
Sbjct: 205 --------------------------------LDVSSNNFSTGIPF-LGDCSALQHLDIS 231

Query: 309 HNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFARPDLYTN 361
            N L+G    + +    L+ L++SSN+  G IP          S     L  N
Sbjct: 232 GNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP-----LPLKSLQYLSLAEN 279

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  176 bits (450), Expect = 5e-53
 Identities = 65/309 (21%), Positives = 106/309 (34%), Gaps = 78/309 (25%)

Query: 40  KNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSH-NNLS 98
             +  L+L    +                        IP S+ +L  L ++ +   NNL 
Sbjct: 50  YRVNNLDLSGLNLPKP-------------------YPIPSSLANLPYLNFLYIGGINNLV 90

Query: 99  GTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADC 158
           G IPP +   + QL  L++ +  + G IPD  +     L +L  + N L G+ P  ++  
Sbjct: 91  GPIPPAIAKLT-QLHYLYITHTNVSGAIPDFLSQIK-TLVTLDFSYNALSGTLPPSISSL 148

Query: 159 TGLEVVNVGNNMIGDTFPSWLGSLPGL-KILVLRSNRFYGPLCEVNIMLPFE----ALRI 213
             L  +    N I    P   GS   L   + +  NR  G +       P       L  
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI-------PPTFANLNLAF 201

Query: 214 IDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKR 273
           +DLS N   G        S +                                       
Sbjct: 202 VDLSRNMLEGDASVLFG-SDKNT------------------------------------- 223

Query: 274 IITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSS 333
                  I L+ N    ++ + +G  K+L  L+L +N + G++P     +  L SL++S 
Sbjct: 224 -----QKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277

Query: 334 NKLHGRIPE 342
           N L G IP+
Sbjct: 278 NNLCGEIPQ 286

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  161 bits (411), Expect = 3e-47
 Identities = 57/280 (20%), Positives = 98/280 (35%), Gaps = 51/280 (18%)

Query: 68  FSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGT--IPPCLGNFSTQLTILHL-NNNYLQG 124
             N    G +  +      +  + LS  NL     IP  L N    L  L++   N L G
Sbjct: 33  CCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLP-YLNFLYIGGINNLVG 91

Query: 125 RIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPG 184
            IP A A  +  L  L +    + G+ P +L+    L  ++   N +  T P  + SLP 
Sbjct: 92  PIPPAIAKLT-QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150

Query: 185 LKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGS 244
           L  +    NR  G + + +     +    + +S N  TG +P     +   +        
Sbjct: 151 LVGITFDGNRISGAIPD-SYGSFSKLFTSMTISRNRLTGKIPP----TFANLN------- 198

Query: 245 DGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIV 304
                                               +DLS N  +G+   + G  K+   
Sbjct: 199 ---------------------------------LAFVDLSRNMLEGDASVLFGSDKNTQK 225

Query: 305 LNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQF 344
           ++L+ N L   +         L  LDL +N+++G +P+  
Sbjct: 226 IHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGL 264

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  145 bits (369), Expect = 4e-41
 Identities = 65/241 (26%), Positives = 96/241 (39%), Gaps = 27/241 (11%)

Query: 1   LSNNRIRGRISKSDS-QRWKSLTYLDISN-NFLT-QIEQHPW-----KNITVLNLQNNTI 52
           LS   +        S      L +L I   N L   I   P        +  L + +  +
Sbjct: 57  LSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPI---PPAIAKLTQLHYLYITHTNV 113

Query: 53  QGTILVPPPST-------RAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCL 105
            G I    P             FS N L G +PPSI SL +L  I+   N +SG IP   
Sbjct: 114 SGAI----PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY 169

Query: 106 GNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVN 165
           G+FS   T + ++ N L G+IP  F   + +L  + L+ N L G            + ++
Sbjct: 170 GSFSKLFTSMTISRNRLTGKIPPTF--ANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIH 227

Query: 166 VGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFL 225
           +  N +       +G    L  L LR+NR YG L +    L F  L  +++S N   G +
Sbjct: 228 LAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKF--LHSLNVSFNNLCGEI 284

Query: 226 P 226
           P
Sbjct: 285 P 285

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  114 bits (289), Expect = 1e-29
 Identities = 55/213 (25%), Positives = 87/213 (40%), Gaps = 28/213 (13%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLT-QIEQHP-----WKNITVLNLQNNTIQG 54
           +++  + G I    SQ  K+L  LD S N L+  +   P       N+  +    N I G
Sbjct: 108 ITHTNVSGAIPDFLSQI-KTLVTLDFSYNALSGTL---PPSISSLPNLVGITFDGNRISG 163

Query: 55  TILVPPPS-------TRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGN 107
            I   P S         +   S N+L G+IPP+  +L+ L ++ LS N L G      G+
Sbjct: 164 AI---PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGS 219

Query: 108 FSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVG 167
                  +HL  N L   +         +L  L L +N++ G+ P+ L     L  +NV 
Sbjct: 220 DKN-TQKIHLAKNSLAFDLGK-VGLSK-NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276

Query: 168 NNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLC 200
            N +    P   G+L    +    +N+    LC
Sbjct: 277 FNNLCGEIPQ-GGNLQRFDVSAYANNKC---LC 305

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 89.5 bits (223), Expect = 2e-20
 Identities = 43/243 (17%), Positives = 79/243 (32%), Gaps = 74/243 (30%)

Query: 106 GNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSF--PRYLADCTGLEV 163
              S+ L      N    G + D     +  + +L L+   L   +  P  LA+   L  
Sbjct: 22  TTLSSWLPTTDCCNRTWLGVLCDTDTQ-TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF 80

Query: 164 VNVGN-NMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFT 222
           + +G  N +    P  +  L  L  L                           ++H   +
Sbjct: 81  LYIGGINNLVGPIPPAIAKLTQLHYL--------------------------YITHTNVS 114

Query: 223 GFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTID 282
           G +P ++                                     +   +K +     T+D
Sbjct: 115 GAIPDFL------------------------------------SQ---IKTL----VTLD 131

Query: 283 LSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVL-ESLDLSSNKLHGRIP 341
            S N   G +P  +    +L+ +    N ++G+IP S+ +   L  S+ +S N+L G+IP
Sbjct: 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191

Query: 342 EQF 344
             F
Sbjct: 192 PTF 194

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 54.5 bits (132), Expect = 1e-08
 Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 19/116 (16%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLT----QIEQHPWKNITVLNLQNNTIQGTI 56
           LS N + G  S       K+   + ++ N L     ++     KN+  L+L+NN I GT+
Sbjct: 204 LSRNMLEGDASVLFGSD-KNTQKIHLAKNSLAFDLGKVGLS--KNLNGLDLRNNRIYGTL 260

Query: 57  LVPPPST------RAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNN-LSGT-IPPC 104
              P          +   S N L G+IP    +L   +  + ++N  L G+ +P C
Sbjct: 261 ---PQGLTQLKFLHSLNVSFNNLCGEIPQGG-NLQRFDVSAYANNKCLCGSPLPAC 312

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  177 bits (451), Expect = 3e-50
 Identities = 67/363 (18%), Positives = 122/363 (33%), Gaps = 32/363 (8%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPWKNIT---VLNLQNNTIQGTI- 56
           LS N +   +          L Y  +  N +  +  H    +     LNL+ +  + +I 
Sbjct: 255 LSYNNLNV-VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS 313

Query: 57  -----------LVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPP-- 103
                                   +N + G        L +L+Y+SLS++  S       
Sbjct: 314 LASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNE 373

Query: 104 -CLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRY-LADCTGL 161
             +    + L IL+L  N +     DAF+     L  L L  N++              +
Sbjct: 374 TFVSLAHSPLHILNLTKNKISKIESDAFSWLG-HLEVLDLGLNEIGQELTGQEWRGLENI 432

Query: 162 EVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEF 221
             + +  N       +    +P L+ L+LR           +   P   L I+DLS+N  
Sbjct: 433 FEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNI 492

Query: 222 TGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTI 281
                  +   LE ++ +D + +                     G  +   + ++    +
Sbjct: 493 ANINDD-MLEGLEKLEILDLQHN----------NLARLWKHANPGGPIYFLKGLSHLHIL 541

Query: 282 DLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIP 341
           +L SN F     +V  D   L +++L  N L       F N + L+SL+L  N +     
Sbjct: 542 NLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEK 601

Query: 342 EQF 344
           + F
Sbjct: 602 KVF 604

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  162 bits (411), Expect = 1e-44
 Identities = 66/363 (18%), Positives = 129/363 (35%), Gaps = 35/363 (9%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQH---PWKNITVLNLQNNTIQGTI- 56
           L +N I+  I  +   + K+L  LD+S+N L+  +       +N+  L L NN IQ    
Sbjct: 104 LMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS 162

Query: 57  ----LVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPP--CLGNFST 110
               +    S +    S+N++    P   +++  L  + L++  L  ++    CL   +T
Sbjct: 163 EELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANT 222

Query: 111 QLTILHLNNNYLQGRIPDAFAN-GSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNN 169
            +  L L+N+ L       F      +L  L L+ N L        A    LE   +  N
Sbjct: 223 SIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN 282

Query: 170 MIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNI-------MLPFEALRIIDLSHNEFT 222
            I   F   L  L  ++ L L+ +     +   ++           + L  +++  N+  
Sbjct: 283 NIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP 342

Query: 223 GFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTID 282
           G +   +F  L  +K +                     ++     +  +    +    ++
Sbjct: 343 G-IKSNMFTGLINLKYL--------------SLSNSFTSLRTLTNETFVSLAHSPLHILN 387

Query: 283 LSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVS-FANMIVLESLDLSSNKLHGRIP 341
           L+ N+              L VL+L  N +   +    +  +  +  + LS NK      
Sbjct: 388 LTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTR 447

Query: 342 EQF 344
             F
Sbjct: 448 NSF 450

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  155 bits (393), Expect = 3e-42
 Identities = 67/363 (18%), Positives = 120/363 (33%), Gaps = 64/363 (17%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGTI- 56
           L++N++R  +  ++  R+  LT LD+  N ++++E         + VLNLQ+N +     
Sbjct: 32  LTHNQLRR-LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSD 90

Query: 57  --LVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTI 114
                  +       +N +            +L  + LSHN LS T           L  
Sbjct: 91  KTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQ-LENLQE 149

Query: 115 LHLNNNYLQGRIPDAFANGSCD-LRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGD 173
           L L+NN +Q    +     +   L+ L L+SN+++   P        L  + + N  +G 
Sbjct: 150 LLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGP 209

Query: 174 TFPSWLG---SLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIF 230
           +    L    +   ++ L L +++         + L +  L ++DLS+N     +    F
Sbjct: 210 SLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV-VGNDSF 268

Query: 231 VSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQG 290
             L                                                 L  N  Q 
Sbjct: 269 AWL------------------------------------------PQLEYFFLEYNNIQH 286

Query: 291 EIPQVLGDFKSLIVLNLSHN---------GLTGSIPVSFANMIVLESLDLSSNKLHGRIP 341
                L    ++  LNL  +          L      SF  +  LE L++  N + G   
Sbjct: 287 LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKS 346

Query: 342 EQF 344
             F
Sbjct: 347 NMF 349

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  151 bits (384), Expect = 5e-41
 Identities = 68/329 (20%), Positives = 111/329 (33%), Gaps = 45/329 (13%)

Query: 20  SLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPP 79
           S    D S+  LTQ+      NITVLNL                     ++N+L      
Sbjct: 5   SHEVADCSHLKLTQVPDDLPTNITVLNL---------------------THNQLRRLPAA 43

Query: 80  SIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRS 139
           +    S L  + +  N +S   P         L +L+L +N L       FA  + +L  
Sbjct: 44  NFTRYSQLTSLDVGFNTISKLEPELCQKL-PMLKVLNLQHNELSQLSDKTFAFCT-NLTE 101

Query: 140 LGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPL 199
           L L SN ++            L  +++ +N +  T       L  L+ L+L +N+     
Sbjct: 102 LHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALK 161

Query: 200 CEVNIMLPFEALRIIDLSHNEFTGFLPRWI--FVSLETMKNVDEKGSDGLYMQGEEDYYQ 257
            E   +    +L+ ++LS N+   F P        L             L++        
Sbjct: 162 SEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFG-----------LFLNN---VQL 207

Query: 258 DSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFK--SLIVLNLSHNGLTGS 315
                     +L    I      + LS++Q            K  +L +L+LS+N L   
Sbjct: 208 GPSLTEKLCLELANTSI----RNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263

Query: 316 IPVSFANMIVLESLDLSSNKLHGRIPEQF 344
              SFA +  LE   L  N +        
Sbjct: 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSL 292

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  140 bits (356), Expect = 3e-37
 Identities = 55/345 (15%), Positives = 112/345 (32%), Gaps = 52/345 (15%)

Query: 19  KSLTYLDISNNFLTQIEQHP---WKNITVLNLQNNTIQGTI---LVPPPSTRAFLFSNNK 72
            ++T L++++N L ++       +  +T L++  NTI           P  +     +N+
Sbjct: 25  TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84

Query: 73  LFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFAN 132
           L      +    ++L  + L  N++              L  L L++N L          
Sbjct: 85  LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ-KNLITLDLSHNGLSSTKLGTQVQ 143

Query: 133 GSCDLRSLGLNSNKLRGSFPRYLADC--TGLEVVNVGNNMIGDTFPSWLGSLPGLKILVL 190
              +L+ L L++NK++      L     + L+ + + +N I +  P    ++  L  L L
Sbjct: 144 LE-NLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFL 202

Query: 191 RSNRFYGPLCEVNIM-LPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYM 249
            + +    L E   + L   ++R + LS+++ +       F+ L+               
Sbjct: 203 NNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT-FLGLKWTN------------ 249

Query: 250 QGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSH 309
                                        T +DLS N               L    L +
Sbjct: 250 ----------------------------LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 281

Query: 310 NGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFA 354
           N +      S   +  +  L+L  +     I    +      SF 
Sbjct: 282 NNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQ 326

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  112 bits (282), Expect = 2e-27
 Identities = 55/251 (21%), Positives = 83/251 (33%), Gaps = 25/251 (9%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQI----EQHPWKNITVLNLQNNTIQGTI 56
           L+ N+I   I          L  LD+  N + Q     E    +NI  + L  N      
Sbjct: 388 LTKNKISK-IESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT 446

Query: 57  ---LVPPPSTRAFLFSNNKL--FGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQ 111
                  PS +  +     L      P     L +L  + LS+NN++      L     +
Sbjct: 447 RNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL-EK 505

Query: 112 LTILHLNNNYLQGRIPDAFANGSCD-------LRSLGLNSNKLRGSFPRYLADCTGLEVV 164
           L IL L +N L      A   G          L  L L SN           D   L+++
Sbjct: 506 LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKII 565

Query: 165 NVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTG- 223
           ++G N +     S   +   LK L L+ N     + +      F  L  +D+  N F   
Sbjct: 566 DLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS-VEKKVFGPAFRNLTELDMRFNPFDCT 624

Query: 224 -----FLPRWI 229
                +   WI
Sbjct: 625 CESIAWFVNWI 635

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  108 bits (271), Expect = 7e-26
 Identities = 69/365 (18%), Positives = 117/365 (32%), Gaps = 63/365 (17%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPW-------KNITVLNLQNNTIQ 53
           + +N I G I  +      +L YL +SN+F +                + +LNL  N I 
Sbjct: 336 MEDNDIPG-IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKIS 394

Query: 54  GTILVPPPSTRAFL-------FSNNKLFGQIPPS-IYSLSSLEYISLSHNNLSGTIPPCL 105
                      ++L          N++  ++       L ++  I LS+N          
Sbjct: 395 KI----ESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSF 450

Query: 106 GNFSTQLTILHLNNNYLQG--RIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEV 163
                 L  L L    L+     P  F     +L  L L++N +       L     LE+
Sbjct: 451 ALV-PSLQRLMLRRVALKNVDSSPSPFQPLR-NLTILDLSNNNIANINDDMLEGLEKLEI 508

Query: 164 VNVGNNMI--------GDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIID 215
           +++ +N +              +L  L  L IL L SN F      V +      L+IID
Sbjct: 509 LDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEI--PVEVFKDLFELKIID 566

Query: 216 LSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLY---MQGEEDYYQDSVTVTVKGRDLVLK 272
           L  N     LP  +F +  ++K+++      L    +   E                V  
Sbjct: 567 LGLNNLNT-LPASVFNNQVSLKSLN------LQKNLITSVEKK--------------VFG 605

Query: 273 RIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSI----PVSFANMIVLES 328
                 T +D+  N F      +      +   + +   L+       P  +    V   
Sbjct: 606 PAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVR-L 664

Query: 329 LDLSS 333
            D SS
Sbjct: 665 FDTSS 669

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  144 bits (365), Expect = 1e-38
 Identities = 55/366 (15%), Positives = 117/366 (31%), Gaps = 46/366 (12%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQH--PWKNITVLNLQNNTIQGTILV 58
           ++++  +  I KS        T +   +N +T + +       +    + N+        
Sbjct: 166 INSDPQQKSIKKSSRIT-LKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAEN-- 222

Query: 59  PPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLN 118
              +         + +        +L  L  + + +      +P  L     ++ ++++ 
Sbjct: 223 ICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL-PEMQLINVA 281

Query: 119 NNYL--------QGRIPDAFANGSCDLRSLGLNSNKLR-GSFPRYLADCTGLEVVNVGNN 169
            N            +       G   ++ + +  N L+       L     L ++    N
Sbjct: 282 CNRGISGEQLKDDWQALADAPVGEK-IQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN 340

Query: 170 MIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWI 229
            +    P+  GS   L  L L  N+                +  +  +HN+       + 
Sbjct: 341 QLEGKLPA-FGSEIKLASLNLAYNQITEIPANFCGFTE--QVENLSFAHNKLKYIPNIFD 397

Query: 230 FVSLETMKNVDEKGSDGLY---MQGEEDYYQDSVTVTV-KGRDLVLKRIITIFTTIDLSS 285
             S+  M  +D           +   +    D +  T  KG ++         ++I+LS+
Sbjct: 398 AKSVSVMSAID------FSYNEIGSVDGKNFDPLDPTPFKGINV---------SSINLSN 442

Query: 286 NQFQGEIPQVLGDFKSLIVLNLSHNGLTG-------SIPVSFANMIVLESLDLSSNKLHG 338
           NQ      ++      L  +NL  N LT            +F N  +L S+DL  NKL  
Sbjct: 443 NQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK 502

Query: 339 RIPEQF 344
            + + F
Sbjct: 503 -LSDDF 507

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  142 bits (361), Expect = 5e-38
 Identities = 55/363 (15%), Positives = 104/363 (28%), Gaps = 87/363 (23%)

Query: 19  KSLTYLDISNNFLTQIEQHPW-----------KNITVLNLQNNTIQGTILVPPPST---- 63
             +  ++++ N     EQ              + I ++ +  N ++     P  ++    
Sbjct: 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT---FPVETSLQKM 329

Query: 64  ---RAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNN 120
                     N+L G   P+  S   L  ++L++N ++  IP     F+ Q+  L   +N
Sbjct: 330 KKLGMLECLYNQLEG-KLPAFGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHN 387

Query: 121 YLQGRIPDAFANGSC-DLRSLGLNSNKLRG-------SFPRYLADCTGLEVVNVGNNMIG 172
            L+  IP+ F   S   + ++  + N++                    +  +N+ NN I 
Sbjct: 388 KLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS 446

Query: 173 DTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFE-----ALRIIDLSHNEFTGFLPR 227
                   +   L  + L  N                      L  IDL  N+ T     
Sbjct: 447 KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDD 506

Query: 228 WIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQ 287
           +   +L  +                                            IDLS N 
Sbjct: 507 FRATTLPYL------------------------------------------VGIDLSYNS 524

Query: 288 FQGEIPQVLGDFKSLIVLNLSH------NGLTGSIPVSFANMIVLESLDLSSNKLHGRIP 341
           F    P    +  +L    + +      N      P        L  L + SN +   + 
Sbjct: 525 FSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VN 582

Query: 342 EQF 344
           E+ 
Sbjct: 583 EKI 585

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  131 bits (331), Expect = 7e-34
 Identities = 57/372 (15%), Positives = 110/372 (29%), Gaps = 72/372 (19%)

Query: 1   LSNNRIRGRISKSDS-------QRWKSLTYLDISNNFLTQIEQHPW----KNITVLNLQN 49
           ++ NR        D           + +  + I  N L            K + +L    
Sbjct: 280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLY 339

Query: 50  NTIQGTI--LVPPPSTRAFLFSNNKLFGQIPPSIYS-LSSLEYISLSHNNLSGTIPPCLG 106
           N ++G +          +   + N++  +IP +       +E +S +HN L   IP    
Sbjct: 340 NQLEGKLPAFGSEIKLASLNLAYNQI-TEIPANFCGFTEQVENLSFAHNKLK-YIPNIFD 397

Query: 107 NFS-TQLTILHLNNNYLQGRIPDAFAN------GSCDLRSLGLNSNKLRGSFPRYLADCT 159
             S + ++ +  + N +       F           ++ S+ L++N++        +  +
Sbjct: 398 AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGS 457

Query: 160 GLEVVNVGNNMI-------GDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALR 212
            L  +N+  NM+                +   L  + LR N+    L +         L 
Sbjct: 458 PLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLV 516

Query: 213 IIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLK 272
            IDLS+N F+   P     +  T+K                                   
Sbjct: 517 GIDLSYNSFSK-FPTQPL-NSSTLKGFG-------------------------------- 542

Query: 273 RIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLS 332
               I    D   N+   E P+ +    SL  L +  N +   +         +  LD+ 
Sbjct: 543 ----IRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKI--TPNISVLDIK 595

Query: 333 SNKLHGRIPEQF 344
            N          
Sbjct: 596 DNPNISIDLSYV 607

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  127 bits (321), Expect = 1e-32
 Identities = 51/362 (14%), Positives = 103/362 (28%), Gaps = 71/362 (19%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLT------------QIEQHPWKNITVLNLQ 48
           L      GR+  +  Q    L  L + ++                      K    ++ Q
Sbjct: 88  LEGFGASGRVPDAIGQL-TELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQ 146

Query: 49  NNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNF 108
              +                +++     I  S         I    NN++  +   +   
Sbjct: 147 KTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRL 205

Query: 109 STQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGN 168
            T+L   ++ N+                  +      +   +      +   L  V V N
Sbjct: 206 -TKLRQFYMGNSPFVAENICEA------WENENSEYAQQYKTEDLKWDNLKDLTDVEVYN 258

Query: 169 NMIGDTFPSWLGSLPGLKILVLRSNRF-YGPLCEVNIMLPFEA-----LRIIDLSHNEFT 222
                  P++L +LP ++++ +  NR   G   + +     +A     ++II + +N   
Sbjct: 259 CPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318

Query: 223 GFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTID 282
            F        ++ +                                            ++
Sbjct: 319 TFPVETSLQKMKKL------------------------------------------GMLE 336

Query: 283 LSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPE 342
              NQ +G++P   G    L  LNL++N +T            +E+L  + NKL   IP 
Sbjct: 337 CLYNQLEGKLPA-FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPN 394

Query: 343 QF 344
            F
Sbjct: 395 IF 396

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  116 bits (293), Expect = 7e-29
 Identities = 53/350 (15%), Positives = 97/350 (27%), Gaps = 100/350 (28%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQI----EQHPWKNITVLNLQNNTIQGTI 56
           L+ N+I   I  +     + +  L  ++N L  I    +      ++ ++   N I    
Sbjct: 360 LAYNQITE-IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVD 418

Query: 57  LVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILH 116
                          K F  + P+ +   ++  I+LS+N +S           + L+ ++
Sbjct: 419 --------------GKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFST-GSPLSSIN 463

Query: 117 LNNNYLQG-------RIPDAFANGSCDLRSLGLNSNKLRGSFP-RYLADCTGLEVVNVGN 168
           L  N L            + F N    L S+ L  NKL              L  +++  
Sbjct: 464 LMGNMLTEIPKNSLKDENENFKNTY-LLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSY 522

Query: 169 NMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRW 228
           N     FP+   +   LK   +R+ R                    D   N      P  
Sbjct: 523 NSF-SKFPTQPLNSSTLKGFGIRNQR--------------------DAQGNRTLREWPEG 561

Query: 229 I--FVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSN 286
           I    SL                                             T + + SN
Sbjct: 562 ITLCPSL---------------------------------------------TQLQIGSN 576

Query: 287 QFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKL 336
             +  + + +    ++ VL++  N             I      L  +K 
Sbjct: 577 DIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKT 623

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 99.0 bits (247), Expect = 6e-23
 Identities = 32/339 (9%), Positives = 80/339 (23%), Gaps = 108/339 (31%)

Query: 20  SLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPP 79
            +T L +     +                                          G++P 
Sbjct: 82  RVTGLSLEGFGAS------------------------------------------GRVPD 99

Query: 80  SIYSLSSLEYISLSHNNLSG----TIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSC 135
           +I  L+ LE ++L  +          P  +   +           + Q    D       
Sbjct: 100 AIGQLTELEVLALGSHGEKVNERLFGPKGISA-NMSDEQKQKMRMHYQKTFVDYDPREDF 158

Query: 136 -DLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNR 194
            DL    +NS+  + S  +          +   +N I       +  L  L+   + ++ 
Sbjct: 159 SDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT-FVSKAVMRLTKLRQFYMGNSP 217

Query: 195 FYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEED 254
           F             EA    +  + +          +  + +K++               
Sbjct: 218 FVAE-------NICEAWENENSEYAQQYKTED----LKWDNLKDL--------------- 251

Query: 255 YYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLT- 313
                                   T +++ +     ++P  L     + ++N++ N    
Sbjct: 252 ------------------------TDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS 287

Query: 314 -------GSIPVSFANMIVLESLDLSSNKL-HGRIPEQF 344
                              ++ + +  N L    +    
Sbjct: 288 GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL 326

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 60.1 bits (146), Expect = 4e-10
 Identities = 17/136 (12%), Positives = 40/136 (29%), Gaps = 19/136 (13%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPWK--NITVLNLQN------NTI 52
           L  N++        +     L  +D+S N  ++    P     +    ++N      N  
Sbjct: 495 LRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRT 554

Query: 53  QGTILVPP-----PSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGN 107
                 P      PS       +N +  ++   I    ++  + +  N         +  
Sbjct: 555 LREW--PEGITLCPSLTQLQIGSNDI-RKVNEKI--TPNISVLDIKDNPNISIDLSYVCP 609

Query: 108 FSTQLTILHLNNNYLQ 123
           +  +  +  L  +  Q
Sbjct: 610 Y-IEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 59.7 bits (145), Expect = 6e-10
 Identities = 20/185 (10%), Positives = 48/185 (25%), Gaps = 26/185 (14%)

Query: 165 NVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFE-----ALRIIDLSHN 219
           N   +M G      L S   +  L L      G +       P        L ++ L  +
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRV-------PDAIGQLTELEVLALGSH 115

Query: 220 EFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFT 279
                   +    +    + ++K    ++ Q                 D   +   +   
Sbjct: 116 GEKVNERLFGPKGISANMSDEQKQKMRMHYQKTF-------------VDYDPREDFSDLI 162

Query: 280 TIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGR 339
              ++S+  Q  I +          +    N +T  +  +   +  L    + ++     
Sbjct: 163 KDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT-FVSKAVMRLTKLRQFYMGNSPFVAE 221

Query: 340 IPEQF 344
              + 
Sbjct: 222 NICEA 226

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  138 bits (348), Expect = 6e-36
 Identities = 56/352 (15%), Positives = 111/352 (31%), Gaps = 41/352 (11%)

Query: 12  KSDSQRWKSLTYLDISNNFLTQIEQ--HPWKNITVLNLQNNTIQGTILVPPPSTRAFLFS 69
           K DS+     T +    N +T I +       + ++   N+    T              
Sbjct: 418 KKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPF--TYDNIAVDWEDANSD 475

Query: 70  NNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQG----- 124
             K +     S  +L  L  + L +      +P  L +   +L  L++  N         
Sbjct: 476 YAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL-PELQSLNIACNRGISAAQLK 534

Query: 125 ----RIPDAFANGSCDLRSLGLNSNKLRG-SFPRYLADCTGLEVVNVGNNMIGDTFPSWL 179
               R+ D    G   ++   +  N L        L     L +++  +N +        
Sbjct: 535 ADWTRLADDEDTGPK-IQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAF 591

Query: 180 GSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNV 239
           G+   L  L L  N+      +         +  +  SHN+       +   S+  M +V
Sbjct: 592 GTNVKLTDLKLDYNQIEEIPEDFCAFTD--QVEGLGFSHNKLKYIPNIFNAKSVYVMGSV 649

Query: 240 DEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDF 299
           D                ++        + +         +T+ LS N+ Q    ++    
Sbjct: 650 D------FSYNKIGSEGRNISCSMDDYKGINA-------STVTLSYNEIQKFPTELFATG 696

Query: 300 KSLIVLNLSHNGLT-------GSIPVSFANMIVLESLDLSSNKLHGRIPEQF 344
             +  + LS+N +T            ++ N  +L ++DL  NKL   + + F
Sbjct: 697 SPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDF 747

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  131 bits (330), Expect = 1e-33
 Identities = 55/380 (14%), Positives = 103/380 (27%), Gaps = 88/380 (23%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPW------------KNITVLNLQ 48
           L N     ++          L  L+I+ N      Q                 I +  + 
Sbjct: 498 LYNCPNMTQLPDFLYD-LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG 556

Query: 49  NNTIQGTILVPPPST-------RAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTI 101
            N ++     P  ++             +NK+  +   +  +   L  + L +N +   I
Sbjct: 557 YNNLEE---FPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIE-EI 610

Query: 102 PPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCD-LRSLGLNSNKLRGSFPRYLAD--- 157
           P     F+ Q+  L  ++N L+  IP+ F   S   + S+  + NK+             
Sbjct: 611 PEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD 669

Query: 158 --CTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFE-----A 210
                   V +  N I         +   +  ++L +N                      
Sbjct: 670 YKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYL 729

Query: 211 LRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLV 270
           L  IDL  N+ T     +   +L  +                                  
Sbjct: 730 LTTIDLRFNKLTSLSDDFRATTLPYL---------------------------------- 755

Query: 271 LKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSH------NGLTGSIPVSFANMI 324
                   + +D+S N F    P    +   L    + H      N +    P       
Sbjct: 756 --------SNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCP 806

Query: 325 VLESLDLSSNKLHGRIPEQF 344
            L  L + SN +   + E+ 
Sbjct: 807 SLIQLQIGSNDIRK-VDEKL 825

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  123 bits (309), Expect = 6e-31
 Identities = 48/362 (13%), Positives = 101/362 (27%), Gaps = 70/362 (19%)

Query: 1   LSNNRIRGRISKSDSQ--------RWKSLTYLDISNNFLTQIEQHPW----KNITVLNLQ 48
           ++ NR                       +    +  N L +            + +L+  
Sbjct: 522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCV 581

Query: 49  NNTIQG-TILVPPPSTRAFLFSNNKLFGQIPPSI-YSLSSLEYISLSHNNLSGTIPPCLG 106
           +N ++                  N++  +IP         +E +  SHN L   IP    
Sbjct: 582 HNKVRHLEAFGTNVKLTDLKLDYNQI-EEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFN 639

Query: 107 NFS-TQLTILHLNNNYLQGRIPDAFANGSC----DLRSLGLNSNKLRGSFPRYLADCTGL 161
             S   +  +  + N +     +   +       +  ++ L+ N+++       A  + +
Sbjct: 640 AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPI 699

Query: 162 EVVNVGNNMIGD-------TFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRII 214
             + + NN++                +   L  + LR N+    L +         L  +
Sbjct: 700 STIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNM 758

Query: 215 DLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRI 274
           D+S+N F+   P     +   +K                                     
Sbjct: 759 DVSYNCFSS-FPTQPL-NSSQLKAFG---------------------------------- 782

Query: 275 ITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSN 334
             I    D   N+   + P  +    SLI L +  N +   +         L  LD++ N
Sbjct: 783 --IRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLTPQ--LYILDIADN 837

Query: 335 KL 336
             
Sbjct: 838 PN 839

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  119 bits (300), Expect = 9e-30
 Identities = 51/364 (14%), Positives = 90/364 (24%), Gaps = 75/364 (20%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPP 60
           L+    +GR+  +  Q    L  L    +  T   +         ++         +   
Sbjct: 330 LAGFGAKGRVPDAIGQ-LTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYK 388

Query: 61  PSTRAFL------------FSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNF 108
                +              + N     I            I    N ++  I   +   
Sbjct: 389 KMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRL 447

Query: 109 STQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGN 168
            T+L I++  N+                      +  K   +     ++   L  V + N
Sbjct: 448 -TKLQIIYFANSPFTYDNIAVD------WEDANSDYAKQYENEELSWSNLKDLTDVELYN 500

Query: 169 NMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIM--LPFE-----ALRIIDLSHNEF 221
                  P +L  LP L+ L +  NR             L  +      ++I  + +N  
Sbjct: 501 CPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560

Query: 222 TGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTI 281
             F        +  +                                            +
Sbjct: 561 EEFPASASLQKMVKL------------------------------------------GLL 578

Query: 282 DLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVS-FANMIVLESLDLSSNKLHGRI 340
           D   N+      +  G    L  L L +N +   IP    A    +E L  S NKL   I
Sbjct: 579 DCVHNKV--RHLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY-I 634

Query: 341 PEQF 344
           P  F
Sbjct: 635 PNIF 638

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  113 bits (285), Expect = 9e-28
 Identities = 64/376 (17%), Positives = 112/376 (29%), Gaps = 79/376 (21%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDIS-NNFLTQIEQ--HPWKNITVLNLQNNTIQGTIL 57
               +       S S   K LT +++     +TQ+    +    +  LN+  N       
Sbjct: 474 SDYAKQYENEELSWSN-LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQ 532

Query: 58  VPPPST------------RAFLFSNNKLFGQIPPS--IYSLSSLEYISLSHNNLSGTIPP 103
           +    T            + F    N L  + P S  +  +  L  +   HN +      
Sbjct: 533 LKADWTRLADDEDTGPKIQIFYMGYNNL-EEFPASASLQKMVKLGLLDCVHNKV--RHLE 589

Query: 104 CLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRY--LADCTGL 161
             G    +LT L L+ N ++  IP+ F   +  +  LG + NKL+   P          +
Sbjct: 590 AFGTN-VKLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVM 646

Query: 162 EVVNVGNNMIGDTFPSWLGSLPG-----LKILVLRSNRFYGPLCEVNIMLPFEALRIIDL 216
             V+   N IG    +   S+          + L  N       E+        +  I L
Sbjct: 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSP--ISTIIL 704

Query: 217 SHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIIT 276
           S+N  T      +       KN                                   +  
Sbjct: 705 SNNLMTSIPENSLKPKDGNYKN--------------------------------TYLL-- 730

Query: 277 IFTTIDLSSNQFQGEIPQ--VLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDL--- 331
             TTIDL  N+    +           L  +++S+N  + S P    N   L++  +   
Sbjct: 731 --TTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQ 786

Query: 332 ---SSNKLHGRIPEQF 344
                N++  + P   
Sbjct: 787 RDAEGNRILRQWPTGI 802

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  105 bits (264), Expect = 5e-25
 Identities = 54/360 (15%), Positives = 105/360 (29%), Gaps = 73/360 (20%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQI-EQHPWKNITVLNLQNNTIQG---TI 56
           +  N +    + +  Q+   L  LD  +N +  +        +T L L  N I+      
Sbjct: 555 MGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDF 614

Query: 57  LVPPPSTRAFLFSNNKLFGQIPP--SIYSLSSLEYISLSHNNLSGTIPPCLGNFS----T 110
                      FS+NKL   IP   +  S+  +  +  S+N +         +       
Sbjct: 615 CAFTDQVEGLGFSHNKL-KYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673

Query: 111 QLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLR-------GSFPRYLADCTGLEV 163
             + + L+ N +Q    + FA GS  + ++ L++N +                +   L  
Sbjct: 674 NASTVTLSYNEIQKFPTELFATGS-PISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTT 732

Query: 164 VNVGNNMIGDTFPSW-LGSLPGLKILVLRSNRFYG---PLCEVNIMLPFEALRIIDLSHN 219
           +++  N +      +   +LP L  + +  N F          + +  F      D   N
Sbjct: 733 IDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGN 792

Query: 220 EFTGFLPRWI--FVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITI 277
                 P  I    SL                                            
Sbjct: 793 RILRQWPTGITTCPSLI------------------------------------------- 809

Query: 278 FTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLH 337
              + + SN  + ++ + L     L +L+++ N        S    I      L  +K  
Sbjct: 810 --QLQIGSNDIR-KVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 97.6 bits (243), Expect = 2e-22
 Identities = 36/314 (11%), Positives = 83/314 (26%), Gaps = 45/314 (14%)

Query: 45  LNLQNNTIQGTILVPPP--STRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIP 102
           L+ +N       +          F    +    Q    + +   +  +SL+     G +P
Sbjct: 281 LDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVP 340

Query: 103 PCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLE 162
             +G   T+L +L    +                  S              +L     L 
Sbjct: 341 DAIGQL-TELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLN 399

Query: 163 VVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFE-----ALRIIDLS 217
           + ++  + I       +  +     + L+  +       +   +         L+II  +
Sbjct: 400 LSDLLQDAINRN--PEMKPIKKDSRISLKDTQIGNLTNRIT-FISKAIQRLTKLQIIYFA 456

Query: 218 HNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITI 277
           ++ FT       +    +      +  +  +                      LK +   
Sbjct: 457 NSPFTYDNIAVDWEDANSDYAKQYENEELSWSN--------------------LKDL--- 493

Query: 278 FTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTG---------SIPVSFANMIVLES 328
            T ++L +     ++P  L D   L  LN++ N              +         ++ 
Sbjct: 494 -TDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQI 552

Query: 329 LDLSSNKLHGRIPE 342
             +  N L    P 
Sbjct: 553 FYMGYNNLEE-FPA 565

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 63.0 bits (153), Expect = 6e-11
 Identities = 27/240 (11%), Positives = 71/240 (29%), Gaps = 59/240 (24%)

Query: 124 GRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLP 183
           G  P    + +  +  L L     +G  P  +   T L+V++ G +    +   +     
Sbjct: 312 GDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEEL 371

Query: 184 GLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKG 243
              +   R +R      +   +   + L + DL  +      P    +  ++  ++ +  
Sbjct: 372 TPDMSEERKHRIRMHYKK-MFLDYDQRLNLSDLLQDAINR-NPEMKPIKKDSRISLKD-- 427

Query: 244 SDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLI 303
                                              T I   +N+    I + +     L 
Sbjct: 428 -----------------------------------TQIGNLTNRITF-ISKAIQRLTKLQ 451

Query: 304 VLNLSHNGLTG-------------------SIPVSFANMIVLESLDLSSNKLHGRIPEQF 344
           ++  +++  T                    +  +S++N+  L  ++L +     ++P+  
Sbjct: 452 IIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL 511

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.7 bits (129), Expect = 6e-08
 Identities = 12/68 (17%), Positives = 28/68 (41%)

Query: 279 TTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHG 338
           T + L+    +G +P  +G    L VL+   +  T S  +     +  +  +   +++  
Sbjct: 326 TGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRM 385

Query: 339 RIPEQFVD 346
              + F+D
Sbjct: 386 HYKKMFLD 393

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 50.3 bits (120), Expect = 7e-07
 Identities = 8/65 (12%), Positives = 22/65 (33%)

Query: 280 TIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGR 339
             +   + +  +    L +   +  L+L+  G  G +P +   +  L+ L   ++     
Sbjct: 303 NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVS 362

Query: 340 IPEQF 344
                
Sbjct: 363 GRLFG 367

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  136 bits (345), Expect = 8e-36
 Identities = 57/348 (16%), Positives = 99/348 (28%), Gaps = 58/348 (16%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPW-KNITVLNLQNNTIQGTILVP 59
           L+                 +++   + +  + +++   +      L L N        + 
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLK 323

Query: 60  PPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLS--GTIPPCLGNFSTQLTILHL 117
             S +   F++NK  G    S   L SLE++ LS N LS  G         +T L  L L
Sbjct: 324 LKSLKRLTFTSNK--GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG-TTSLKYLDL 380

Query: 118 NNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRY-LADCTGLEVVNVGNNMIGDTFP 176
           + N +     +        L  L    + L+             L  +++ +      F 
Sbjct: 381 SFNGVITMSSNFLGLEQ--LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438

Query: 177 SWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWI--FVSLE 234
                L  L++L +  N F       +I      L  +DLS  +     P       SL+
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLP-DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497

Query: 235 TMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQ 294
                                                         +++S N F      
Sbjct: 498 V---------------------------------------------LNMSHNNFFSLDTF 512

Query: 295 VLGDFKSLIVLNLSHNGLTGSIPVSFANMIV-LESLDLSSNKLHGRIP 341
                 SL VL+ S N +  S      +    L  L+L+ N       
Sbjct: 513 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  128 bits (325), Expect = 3e-33
 Identities = 63/366 (17%), Positives = 113/366 (30%), Gaps = 30/366 (8%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGTI- 56
           LS   I+  I     Q    L+ L ++ N +  +         ++  L      +     
Sbjct: 59  LSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN 117

Query: 57  --LVPPPSTRAFLFSNNKL-FGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFS---T 110
             +    + +    ++N +   ++P    +L++LE++ LS N +       L        
Sbjct: 118 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177

Query: 111 QLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRY-LADCTGLEVVN---- 165
               L L+ N +    P AF      L  L L +N    +  +  +    GLEV      
Sbjct: 178 LNLSLDLSLNPMNFIQPGAFKEIR--LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG 235

Query: 166 --VGNNMIGDTFPSWLGSLPGLKILVLRSNRFYG-PLCEVNIMLPFEALRIIDLSHNEFT 222
                  +     S L  L  L I   R           +++      +    L      
Sbjct: 236 EFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE 295

Query: 223 GFLPRWIFVSLET--MKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTT 280
                      +   + N        L ++  +     S        ++ L  +      
Sbjct: 296 RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSL----EF 351

Query: 281 IDLSSNQ--FQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHG 338
           +DLS N   F+G   Q      SL  L+LS NG+   +  +F  +  LE LD   + L  
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQ 410

Query: 339 RIPEQF 344
                 
Sbjct: 411 MSEFSV 416

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  127 bits (321), Expect = 1e-32
 Identities = 70/361 (19%), Positives = 124/361 (34%), Gaps = 20/361 (5%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGTI- 56
           LS N +R  +       +  L  LD+S   +  IE        +++ L L  N IQ    
Sbjct: 35  LSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 93

Query: 57  --LVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTI 114
                  S +  +     L       I  L +L+ ++++HN +     P   +  T L  
Sbjct: 94  GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153

Query: 115 LHLNNNYLQGRIPDAFANGS---CDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMI 171
           L L++N +Q                  SL L+ N +    P    +   L  + + NN  
Sbjct: 154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFD 212

Query: 172 -GDTFPSWLGSLPGLKILVLRSNRFYG-PLCEVNIMLPFEALRIIDLSHNEFTG--FLPR 227
             +   + +  L GL++  L    F      E       E L  + +         +   
Sbjct: 213 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD 272

Query: 228 WIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIF--TTIDLSS 285
            I      + NV       + ++  +D+  +     ++  +    +  T+   +   L+ 
Sbjct: 273 DIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTF 332

Query: 286 NQFQGEIPQVLGDFKSLIVLNLSHNGLT--GSIPVSFANMIVLESLDLSSNKLHGRIPEQ 343
              +G       D  SL  L+LS NGL+  G    S      L+ LDLS N +   +   
Sbjct: 333 TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSN 391

Query: 344 F 344
           F
Sbjct: 392 F 392

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  127 bits (320), Expect = 2e-32
 Identities = 59/363 (16%), Positives = 97/363 (26%), Gaps = 75/363 (20%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLT----QIEQHPWKNITVLNLQNNTIQGTI 56
           LS N +      +  +    L  L + NNF +    +        + V  L     +   
Sbjct: 184 LSLNPMNFIQPGAFKE--IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 241

Query: 57  LVPPPSTRAF------------LFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPC 104
            +      A             L   +     I      L+++   SL    +       
Sbjct: 242 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD-- 299

Query: 105 LGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVV 164
             +++     L L N            +    L+ L   SNK   +F     D   LE +
Sbjct: 300 -FSYNFGWQHLELVNCKFGQFPTLKLKS----LKRLTFTSNKGGNAFS--EVDLPSLEFL 352

Query: 165 NVGNNMIG--DTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFT 222
           ++  N +               LK L L  N            L  E L  +D  H+   
Sbjct: 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN---FLGLEQLEHLDFQHSNLK 409

Query: 223 GFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTID 282
                 +F+SL  +                                            +D
Sbjct: 410 QMSEFSVFLSLRNL------------------------------------------IYLD 427

Query: 283 LSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSI-PVSFANMIVLESLDLSSNKLHGRIP 341
           +S    +     +     SL VL ++ N    +  P  F  +  L  LDLS  +L    P
Sbjct: 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487

Query: 342 EQF 344
             F
Sbjct: 488 TAF 490

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  122 bits (308), Expect = 7e-31
 Identities = 47/332 (14%), Positives = 107/332 (32%), Gaps = 43/332 (12%)

Query: 20  SLTYLDISNNFLTQIEQHPWKN---ITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQ 76
           S   LD+S N L  +  + + +   + VL+L                     S  ++   
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDL---------------------SRCEIQTI 67

Query: 77  IPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCD 136
              +  SLS L  + L+ N +           S  L  L      L         +    
Sbjct: 68  EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS-SLQKLVAVETNLASLENFPIGHLK-T 125

Query: 137 LRSLGLNSNKLRG-SFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRF 195
           L+ L +  N ++    P Y ++ T LE +++ +N I   + + L  L  + +L L  +  
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185

Query: 196 YGPLCEVNIMLPFEA--LRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEE 253
             P+  +     F+   L  + L +N  +  + +     L  ++       +        
Sbjct: 186 LNPMNFI-QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE-------- 236

Query: 254 DYYQDSVTVTVKGRDLVLKRIITIFTTIDLSS-NQFQGEIPQVLGDFKSLIVLNLSHNGL 312
             +++   +    +  +            L+  + +  +I  +     ++   +L    +
Sbjct: 237 --FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI 294

Query: 313 TGSIPVSFANMIVLESLDLSSNKLHGRIPEQF 344
                  F+     + L+L + K       + 
Sbjct: 295 ERVKD--FSYNFGWQHLELVNCKFGQFPTLKL 324

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  118 bits (298), Expect = 1e-29
 Identities = 60/368 (16%), Positives = 116/368 (31%), Gaps = 48/368 (13%)

Query: 19  KSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTI---LVPPPSTRAFLFSNNKLFG 75
            ++TY  +  N   +I  +   +   L+L  N ++          P  +    S  ++  
Sbjct: 8   PNITYQCMELN-FYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66

Query: 76  QIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSC 135
               +  SLS L  + L+ N +           S  L  L      L         +   
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS-SLQKLVAVETNLASLENFPIGHLK- 124

Query: 136 DLRSLGLNSNKLRG-SFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNR 194
            L+ L +  N ++    P Y ++ T LE +++ +N I   + + L  L  + +L L  + 
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184

Query: 195 FYGPLCEVNIMLPFEA--LRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGE 252
              P+  +     F+   L  + L +N  +  + +     L  ++       +       
Sbjct: 185 SLNPMNFI-QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243

Query: 253 EDYYQDSVT---------VTVKGRDLVLKRIITIF------TTIDLSSNQFQGEIPQVLG 297
           E + + ++            +   D  L  II +F      ++  L S   +        
Sbjct: 244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FS 301

Query: 298 DFKSLIVLNLSHNGLT-------------------GSIPVSFANMIVLESLDLSSNKLH- 337
                  L L +                       G    S  ++  LE LDLS N L  
Sbjct: 302 YNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSF 361

Query: 338 -GRIPEQF 344
            G   +  
Sbjct: 362 KGCCSQSD 369

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  114 bits (287), Expect = 5e-28
 Identities = 67/373 (17%), Positives = 114/373 (30%), Gaps = 67/373 (17%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPWKNIT-------VLNLQNNTIQ 53
           +++N I+            +L +LD+S+N +  I     + +         L+L  N + 
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

Query: 54  GTILVP--PPSTRAFLFSNNKLFGQIPP-SIYSLSSLEYISLSHNNLSGTIPPCLGNFST 110
                             NN     +    I  L+ LE   L              + S 
Sbjct: 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250

Query: 111 -----QLTILHLNNNYL---QGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLE 162
                 LTI      YL      I D F   + ++ S  L S  +        +   G +
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT-NVSSFSLVSVTIERVKD--FSYNFGWQ 307

Query: 163 VVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHN--E 220
            + + N   G  FP+    L  LK L   SN+      EV++     +L  +DLS N   
Sbjct: 308 HLELVNCKFG-QFPTL--KLKSLKRLTFTSNKGGNAFSEVDL----PSLEFLDLSRNGLS 360

Query: 221 FTGFLPRWIF--VSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIF 278
           F G   +  F   SL+            L +                     +  + + F
Sbjct: 361 FKGCCSQSDFGTTSLKY-----------LDLSFNG-----------------VITMSSNF 392

Query: 279 ------TTIDLSSNQFQGEIPQ-VLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDL 331
                   +D   +  +      V    ++LI L++SH     +    F  +  LE L +
Sbjct: 393 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 452

Query: 332 SSNKLHGRIPEQF 344
           + N          
Sbjct: 453 AGNSFQENFLPDI 465

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 78.5 bits (194), Expect = 4e-16
 Identities = 37/271 (13%), Positives = 74/271 (27%), Gaps = 80/271 (29%)

Query: 79  PSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLR 138
           P +  + ++ Y      N    IP    N       L L+ N L+     +F +   +L+
Sbjct: 2   PCVEVVPNITY-QCMELNFY-KIPD---NLPFSTKNLDLSFNPLRHLGSYSFFSFP-ELQ 55

Query: 139 SLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGP 198
            L L+  +++          + L  + +  N I          L  L+ L          
Sbjct: 56  VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL---------- 105

Query: 199 LCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQD 258
                                             +  +K +                   
Sbjct: 106 ----------------VAVETNLASLENF----PIGHLKTL------------------- 126

Query: 259 SVTVTVKGRDLVLKRIITIFTTIDLSSNQFQG-EIPQVLGDFKSLIVLNLSHNGLTGSIP 317
                                 ++++ N  Q  ++P+   +  +L  L+LS N +     
Sbjct: 127 --------------------KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166

Query: 318 VSFANM----IVLESLDLSSNKLHGRIPEQF 344
                +    ++  SLDLS N ++   P  F
Sbjct: 167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 17/118 (14%), Positives = 37/118 (31%), Gaps = 10/118 (8%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPW---KNITVLNLQNNTIQGTIL 57
           LS  ++   +S +      SL  L++S+N    ++  P+    ++ VL+   N I  +  
Sbjct: 477 LSQCQLEQ-LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 535

Query: 58  ----VPPPSTRAFLFSNNKLFGQIPPS--IYSLSSLEYISLSHNNLSGTIPPCLGNFS 109
                 P S      + N           +  +     + +    +    P       
Sbjct: 536 QELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMP 593

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  134 bits (340), Expect = 3e-35
 Identities = 57/353 (16%), Positives = 106/353 (30%), Gaps = 56/353 (15%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQG--- 54
            S N +   I  +   R  +LT+LD++   +  I +        +  L L  N +     
Sbjct: 40  FSFNVLPT-IQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAE 98

Query: 55  TILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTI 114
           T L  P + +   F    +       +++  +LE + L  N++S    P     + +L +
Sbjct: 99  TALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFP-TEKLKV 157

Query: 115 LHLNNNYLQGRIPDAFAN-GSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGD 173
           L   NN +     +  ++       SL LN N +         D    + +N G      
Sbjct: 158 LDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI-AGIEPGAFDSAVFQSLNFGGTQNLL 216

Query: 174 TFPSWLG--SLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFV 231
                L   ++  L +              V   L   ++  I+L  + F   +    F 
Sbjct: 217 VIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN-ISSNTFH 275

Query: 232 SLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGE 291
               ++                                           +DL++     E
Sbjct: 276 CFSGLQ------------------------------------------ELDLTATHLS-E 292

Query: 292 IPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQF 344
           +P  L    +L  L LS N       +S +N   L  L +  N     +    
Sbjct: 293 LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC 345

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  130 bits (328), Expect = 1e-33
 Identities = 58/358 (16%), Positives = 110/358 (30%), Gaps = 60/358 (16%)

Query: 1   LSNNRIRGRISKSDS-QRWKSLTYLDISNNFLTQIEQHPWK-----NITVLNLQNNTIQG 54
               +    I K       +SL      +     I    ++     ++  +NLQ +    
Sbjct: 209 FGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN 268

Query: 55  ---TILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQ 111
                       +    +   L  ++P  +  LS+L+ + LS N           NF   
Sbjct: 269 ISSNTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISASNF-PS 326

Query: 112 LTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGS--FPRYLADCTGLEVVNVGNN 169
           LT L +  N  +  +         +LR L L+ + +  S      L + + L+ +N+  N
Sbjct: 327 LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN 386

Query: 170 MIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWI 229
                        P L++L L   R        +       L++++LSH+         +
Sbjct: 387 EPLSLKTEAFKECPQLELLDLAFTRLKV-KDAQSPFQNLHLLKVLNLSHSLLDI-SSEQL 444

Query: 230 FVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQ 289
           F  L  ++                                           ++L  N F 
Sbjct: 445 FDGLPALQ------------------------------------------HLNLQGNHFP 462

Query: 290 GEIPQVLGDFK---SLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQF 344
               Q     +    L +L LS   L+     +F ++ ++  +DLS N+L     E  
Sbjct: 463 KGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEAL 520

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  128 bits (325), Expect = 3e-33
 Identities = 64/348 (18%), Positives = 122/348 (35%), Gaps = 57/348 (16%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPW--KNITVLNLQNN---TIQGT 55
           L  +     IS +    +  L  LD++   L+++         +  L L  N    +   
Sbjct: 261 LQKHYFFN-ISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQI 319

Query: 56  ILVPPPSTRAFLFSNNKLFGQIPP-SIYSLSSLEYISLSHNNLSGTIPPCLGNFS--TQL 112
                PS        N    ++    + +L +L  + LSH+++  T   C       + L
Sbjct: 320 SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE-TSDCCNLQLRNLSHL 378

Query: 113 TILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRY-LADCTGLEVVNVGNNMI 171
             L+L+ N       +AF      L  L L   +L+    +    +   L+V+N+ ++++
Sbjct: 379 QSLNLSYNEPLSLKTEAFKECP-QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL 437

Query: 172 GDTFPSWLGSLPGLKILVLRSNRF-YGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIF 230
             +       LP L+ L L+ N F  G + + N +     L I+ LS  + +  + +  F
Sbjct: 438 DISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS-IDQHAF 496

Query: 231 VSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQG 290
            SL+ M                                            +DLS N+   
Sbjct: 497 TSLKMMN------------------------------------------HVDLSHNRLTS 514

Query: 291 EIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHG 338
              + L   K +  LNL+ N ++  +P     +    +++L  N L  
Sbjct: 515 SSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  125 bits (317), Expect = 5e-32
 Identities = 65/354 (18%), Positives = 124/354 (35%), Gaps = 30/354 (8%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQH---PWKNITVLNLQNNTIQ---- 53
                I   I        K+L  L + +N ++ I+     P + + VL+ QNN I     
Sbjct: 112 FIQTGISS-IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSK 170

Query: 54  GTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFS-TQL 112
             +     +T   L  N      I P  +  +  + ++         I   L N +   L
Sbjct: 171 EDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSL 230

Query: 113 TILHLNNNYLQGRIPDAFANGS-CDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMI 171
            +    +   +   P  F       + S+ L  +             +GL+ +++    +
Sbjct: 231 WLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL 290

Query: 172 GDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFV 231
               PS L  L  LK LVL +N+F           P  +L  + +  N     L      
Sbjct: 291 S-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFP--SLTHLSIKGNTKRLELGTGCLE 347

Query: 232 SLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGE 291
           +LE ++         L +  ++    D   + ++     L  +     +++LS N+    
Sbjct: 348 NLENLRE--------LDLSHDDIETSDCCNLQLRN----LSHL----QSLNLSYNEPLSL 391

Query: 292 IPQVLGDFKSLIVLNLSHNGLTGSIPVS-FANMIVLESLDLSSNKLHGRIPEQF 344
             +   +   L +L+L+   L      S F N+ +L+ L+LS + L     + F
Sbjct: 392 KTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF 445

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  125 bits (315), Expect = 9e-32
 Identities = 47/333 (14%), Positives = 91/333 (27%), Gaps = 53/333 (15%)

Query: 20  SLTYLDISNNFLTQIEQH---PWKNITVLNLQNNTIQGTI---LVPPPSTRAFLFSNNKL 73
           S   L+ S N L  I+        N+T L+L    I                 + + N L
Sbjct: 34  STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93

Query: 74  FGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANG 133
                 ++    +L+++      +S      L N    L  L+L +N++           
Sbjct: 94  IFMAETALSGPKALKHLFFIQTGISSIDFIPLHN-QKTLESLYLGSNHISSIKLPKGFPT 152

Query: 134 SCDLRSLGLNSNKLRGSFPRYLADCTGLEVV--NVGNNMIGDTFPSWLGSLPGLKILVLR 191
              L+ L   +N +       ++       +  N+  N I              + L   
Sbjct: 153 E-KLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA-GIEPGAFDSAVFQSLNFG 210

Query: 192 SNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQG 251
             +    + +       ++L +      +    +   +F  L  M               
Sbjct: 211 GTQNLLVIFKGLKNSTIQSLWLGTFEDMDDED-ISPAVFEGLCEMS-------------- 255

Query: 252 EEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNG 311
                                       +I+L  + F          F  L  L+L+   
Sbjct: 256 --------------------------VESINLQKHYFFNISSNTFHCFSGLQELDLTATH 289

Query: 312 LTGSIPVSFANMIVLESLDLSSNKLHGRIPEQF 344
           L+  +P     +  L+ L LS+NK         
Sbjct: 290 LS-ELPSGLVGLSTLKKLVLSANKFENLCQISA 321

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  121 bits (305), Expect = 2e-30
 Identities = 67/357 (18%), Positives = 111/357 (31%), Gaps = 60/357 (16%)

Query: 1   LSNNRIRGRISKSDSQRWKSLT--YLDISNNFLTQIEQHPWK--NITVLNLQNNTIQGTI 56
             NN I   +SK D    +  T   L+++ N +  IE   +       LN         I
Sbjct: 160 FQNNAIHY-LSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVI 218

Query: 57  L-----VPPPSTRAFLFSNNKLFGQIPPSIYSLS--SLEYISLSHNNLSGTIPPCLGNFS 109
                     S     F +       P     L   S+E I+L  +            F 
Sbjct: 219 FKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCF- 277

Query: 110 TQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNV-GN 168
           + L  L L   +L   +P      S  L+ L L++NK         ++   L  +++ GN
Sbjct: 278 SGLQELDLTATHLS-ELPSGLVGLS-TLKKLVLSANKFENLCQISASNFPSLTHLSIKGN 335

Query: 169 NMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRW 228
               +     L +L  L+ L L  +      C    +     L+ ++LS+NE    L   
Sbjct: 336 TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS-LKTE 394

Query: 229 IFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQF 288
            F     +                                            +DL+  + 
Sbjct: 395 AFKECPQL------------------------------------------ELLDLAFTRL 412

Query: 289 QGEIPQ-VLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQF 344
           + +  Q    +   L VLNLSH+ L  S    F  +  L+ L+L  N       ++ 
Sbjct: 413 KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKT 469

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  113 bits (284), Expect = 9e-28
 Identities = 60/355 (16%), Positives = 119/355 (33%), Gaps = 37/355 (10%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPW---KNITVLNLQNNTIQGTIL 57
           L+ N +   ++++     K+L +L      ++ I+  P    K +  L L +N I    L
Sbjct: 88  LTANPLIF-MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKL 146

Query: 58  ---VPPPSTRAFLFSNNKLFGQIPPSIYSLSSLE--YISLSHNNLSGTIPPCLGNFSTQL 112
               P    +   F NN +       + SL       ++L+ N+++  I P   + +   
Sbjct: 147 PKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA-GIEPGAFDSA-VF 204

Query: 113 TILHLNNNYLQGRIPDAFANGSC-DLRSLGLNSNKLRGSFPRYLADCTG--LEVVNVGNN 169
             L+         I     N +   L              P          +E +N+  +
Sbjct: 205 QSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKH 264

Query: 170 MIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWI 229
              +   +      GL+ L L +          + ++    L+ + LS N+F   L +  
Sbjct: 265 YFFNISSNTFHCFSGLQELDLTATHLSELP---SGLVGLSTLKKLVLSANKFEN-LCQIS 320

Query: 230 FVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQ 289
             +  ++ +        L ++G     +          +L           +DLS +  +
Sbjct: 321 ASNFPSLTH--------LSIKGNTKRLELGTGCLENLENL---------RELDLSHDDIE 363

Query: 290 --GEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPE 342
                   L +   L  LNLS+N        +F     LE LDL+  +L  +  +
Sbjct: 364 TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQ 418

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  112 bits (283), Expect = 1e-27
 Identities = 56/290 (19%), Positives = 94/290 (32%), Gaps = 26/290 (8%)

Query: 69  SNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPD 128
            N  L  +IP ++   +S E +  S N L              LT L L    +     D
Sbjct: 20  ENLGLN-EIPGTL--PNSTECLEFSFNVLPTIQNTTFSRL-INLTFLDLTRCQIYWIHED 75

Query: 129 AFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKIL 188
            F +    L +L L +N L       L+    L+ +      I       L +   L+ L
Sbjct: 76  TFQSQH-RLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESL 134

Query: 189 VLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLE------------TM 236
            L SN       ++    P E L+++D  +N     L +    SL+             +
Sbjct: 135 YLGSNHISSI--KLPKGFPTEKLKVLDFQNNAIHY-LSKEDMSSLQQATNLSLNLNGNDI 191

Query: 237 KNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVL 296
             ++    D    Q        ++ V  KG  L    I ++           +   P V 
Sbjct: 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKG--LKNSTIQSL-WLGTFEDMDDEDISPAVF 248

Query: 297 GDFK--SLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQF 344
                 S+  +NL  +        +F     L+ LDL++  L   +P   
Sbjct: 249 EGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGL 297

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 64.7 bits (158), Expect = 1e-11
 Identities = 30/257 (11%), Positives = 63/257 (24%), Gaps = 76/257 (29%)

Query: 90  ISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRG 149
            +  +  L+  IP            L  + N L       F+    +L  L L   ++  
Sbjct: 17  YNCENLGLN-EIPG---TLPNSTECLEFSFNVLPTIQNTTFSRLI-NLTFLDLTRCQIYW 71

Query: 150 SFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFE 209
                      L+ + +  N +     + L                              
Sbjct: 72  IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPK-------------------------- 105

Query: 210 ALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDL 269
           AL+ +       +  +      + +T++                                
Sbjct: 106 ALKHLFFIQTGISS-IDFIPLHNQKTLE-------------------------------- 132

Query: 270 VLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLE-- 327
                     ++ L SN             + L VL+  +N +        +++      
Sbjct: 133 ----------SLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNL 182

Query: 328 SLDLSSNKLHGRIPEQF 344
           SL+L+ N + G  P  F
Sbjct: 183 SLNLNGNDIAGIEPGAF 199

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 23/108 (21%), Positives = 40/108 (37%), Gaps = 9/108 (8%)

Query: 1   LSNNRIRGRISKSDS--QRWKSLTYLDISNNFLTQIEQHPWK---NITVLNLQNN---TI 52
           L  N       +  +  Q    L  L +S   L+ I+QH +     +  ++L +N   + 
Sbjct: 456 LQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSS 515

Query: 53  QGTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGT 100
               L         L ++N +   +P  +  LS    I+L  N L  T
Sbjct: 516 SIEALSHLKGIYLNL-ASNHISIILPSLLPILSQQRTINLRQNPLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 3/65 (4%)

Query: 280 TIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGR 339
           T +  +     EIP  L    S   L  S N L      +F+ +I L  LDL+  +++  
Sbjct: 16  TYNCENLGLN-EIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72

Query: 340 IPEQF 344
             + F
Sbjct: 73  HEDTF 77

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  124 bits (313), Expect = 1e-31
 Identities = 49/340 (14%), Positives = 96/340 (28%), Gaps = 52/340 (15%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPWK-NITVLNLQNNTIQGTILVP 59
           L+                 +++ + ++   +  +E  P       L++    ++    + 
Sbjct: 268 LTYTNDFS-DDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLD 326

Query: 60  PPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFS-TQLTILHLN 118
            P  ++   + NK    I     +L SL Y+ LS N LS +      +     L  L L+
Sbjct: 327 LPFLKSLTLTMNKG--SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLS 384

Query: 119 NNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRY-LADCTGLEVVNVGNNMIGDTFPS 177
            N     +   F     +L+ L    + L+             L  +++        F  
Sbjct: 385 FNGAII-MSANFMGLE-ELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG 442

Query: 178 WLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMK 237
               L  L  L +  N F       N+      L  +DLS  +             +T+ 
Sbjct: 443 IFLGLTSLNTLKMAGNSFKDNTLS-NVFANTTNLTFLDLSKCQLEQISWG----VFDTLH 497

Query: 238 NVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLG 297
            +                                         +++S N           
Sbjct: 498 RL---------------------------------------QLLNMSHNNLLFLDSSHYN 518

Query: 298 DFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLH 337
              SL  L+ S N +  S  +       L   +L++N + 
Sbjct: 519 QLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  123 bits (310), Expect = 4e-31
 Identities = 54/330 (16%), Positives = 101/330 (30%), Gaps = 55/330 (16%)

Query: 20  SLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQ 76
           ++    ++       +    H   N++ ++L   +I+    VP       L        Q
Sbjct: 262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQ 321

Query: 77  IPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCD 136
            P     L  L+ ++L+ N  S +           L+ L L+ N L      ++++   +
Sbjct: 322 FPTL--DLPFLKSLTLTMNKGSISFK---KVALPSLSYLDLSRNALSFSGCCSYSDLGTN 376

Query: 137 -LRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFP-SWLGSLPGLKILVLRSNR 194
            LR L L+ N               L+ ++  ++ +      S   SL  L  L +    
Sbjct: 377 SLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN 435

Query: 195 FYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEED 254
                    I L   +L  + ++ N F       +F +   +                  
Sbjct: 436 TKI--DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL------------------ 475

Query: 255 YYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTG 314
                                   T +DLS  Q +     V      L +LN+SHN L  
Sbjct: 476 ------------------------TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLF 511

Query: 315 SIPVSFANMIVLESLDLSSNKLHGRIPEQF 344
                +  +  L +LD S N++        
Sbjct: 512 LDSSHYNQLYSLSTLDCSFNRIETSKGILQ 541

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  112 bits (282), Expect = 2e-27
 Identities = 49/364 (13%), Positives = 98/364 (26%), Gaps = 50/364 (13%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHP----WKNITVLNLQNN---TIQ 53
               ++   +      +  +L  L++++NF+   +         N+  ++L  N   TI 
Sbjct: 111 AVETKLAS-LESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT 169

Query: 54  GTILVPPPSTRAFLF----SNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFS 109
              L               S N +   I    +    L  ++L  N  S  I        
Sbjct: 170 VNDLQFLRENPQVNLSLDMSLNPI-DFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNL 228

Query: 110 TQLTILHLNNNYLQG-----RIPDAFANGSCDLR--SLGLNSNKLRGSFPRYLADCTGLE 162
             L +  L     +          +   G CD+      L                  + 
Sbjct: 229 AGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVS 288

Query: 163 VVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFT 222
            +++    I   +   +      + L +   +      +    L    L+ + L+ N+ +
Sbjct: 289 AMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQL-----KQFPTLDLPFLKSLTLTMNKGS 341

Query: 223 GFLPRWIFVSLETMKNVDEKGSDGLYMQGEE-DYYQDSVTVTVKGRDLVLKRIITIFTTI 281
               +    SL             L +      +        +    L           +
Sbjct: 342 ISFKKVALPSLSY-----------LDLSRNALSFSGCCSYSDLGTNSL---------RHL 381

Query: 282 DLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVS-FANMIVLESLDLSSNKLHGRI 340
           DLS N     +       + L  L+  H+ L      S F ++  L  LD+S        
Sbjct: 382 DLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDF 440

Query: 341 PEQF 344
              F
Sbjct: 441 DGIF 444

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  110 bits (278), Expect = 7e-27
 Identities = 43/323 (13%), Positives = 92/323 (28%), Gaps = 42/323 (13%)

Query: 20  SLTYLDISNNFLTQIEQHPWKN---ITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQ 76
           S   +D+S N L  ++ + + N   +  L+L                     S  ++   
Sbjct: 33  STKNIDLSFNPLKILKSYSFSNFSELQWLDL---------------------SRCEIETI 71

Query: 77  IPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCD 136
              + + L  L  + L+ N +    P       T L  L      L              
Sbjct: 72  EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGL-TSLENLVAVETKLASLESFPIGQLI-T 129

Query: 137 LRSLGLNSNKLRG-SFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRF 195
           L+ L +  N +     P Y ++ T L  V++  N I     + L  L     + L  +  
Sbjct: 130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS 189

Query: 196 YGPLCEVNIMLPFEA--LRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEE 253
             P+  +     F+   L  + L  N  +  + +    +L  +        +    +  E
Sbjct: 190 LNPIDFIQD-QAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLE 248

Query: 254 DYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLT 313
            +    +                      L+      +         ++  ++L+   + 
Sbjct: 249 IFEPSIMEGLCDVTIDEF----------RLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK 298

Query: 314 GSIPVSFANMIVLESLDLSSNKL 336
                        +SL +   +L
Sbjct: 299 Y--LEDVPKHFKWQSLSIIRCQL 319

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  110 bits (276), Expect = 1e-26
 Identities = 72/366 (19%), Positives = 129/366 (35%), Gaps = 31/366 (8%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGTI- 56
           LS N ++  +       +  L +LD+S   +  IE    H   +++ L L  N IQ    
Sbjct: 39  LSFNPLKI-LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSP 97

Query: 57  --LVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTI 114
                  S    +    KL       I  L +L+ ++++HN +     P   +  T L  
Sbjct: 98  GSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVH 157

Query: 115 LHLNNNYLQGRIPDAFA---NGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNV-GNNM 170
           + L+ NY+Q    +             SL ++ N +             L  + + GN  
Sbjct: 158 VDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFN 216

Query: 171 IGDTFPSWLGSLPGLKILVLRSNRFYG------PLCEVNIMLPFEALRIIDLSHNEFTGF 224
             +   + L +L GL +  L    F            +   L    +    L++      
Sbjct: 217 SSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDF-S 275

Query: 225 LPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIF----TT 280
                F  L  +  +      G+ ++  ED  +     ++      LK+  T+      +
Sbjct: 276 DDIVKFHCLANVSAMS---LAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKS 332

Query: 281 IDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIV--LESLDLSSNKLHG 338
           + L+ N+  G I        SL  L+LS N L+ S   S++++    L  LDLS N    
Sbjct: 333 LTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII 390

Query: 339 RIPEQF 344
            +   F
Sbjct: 391 -MSANF 395

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  109 bits (275), Expect = 2e-26
 Identities = 54/372 (14%), Positives = 104/372 (27%), Gaps = 70/372 (18%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLT----QIEQHPWKNITVLNLQNNTIQGTI 56
           +S N I     +  + +   L  L +  NF +    +        + V  L     +   
Sbjct: 188 MSLNPIDF--IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER 245

Query: 57  LVPPPSTRAFL-----------FSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCL 105
            +                     +    F       + L+++  +SL+  ++   +    
Sbjct: 246 NLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLED-- 302

Query: 106 GNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVN 165
                +   L +    L+             L+SL L  NK   SF         L  ++
Sbjct: 303 VPKHFKWQSLSIIRCQLKQFPTLDLPF----LKSLTLTMNKGSISFK--KVALPSLSYLD 356

Query: 166 VGNNMIGDTFPS--WLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTG 223
           +  N +  +            L+ L L  N            +  E L+ +D  H+    
Sbjct: 357 LSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM---SANFMGLEELQHLDFQHSTLKR 413

Query: 224 FLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIF----- 278
                 F+SLE +  +D                            +        F     
Sbjct: 414 VTEFSAFLSLEKLLYLD----------------------------ISYTNTKIDFDGIFL 445

Query: 279 -----TTIDLSSNQFQGEIPQ-VLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLS 332
                 T+ ++ N F+      V  +  +L  L+LS   L       F  +  L+ L++S
Sbjct: 446 GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMS 505

Query: 333 SNKLHGRIPEQF 344
            N L       +
Sbjct: 506 HNNLLFLDSSHY 517

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  108 bits (272), Expect = 3e-26
 Identities = 49/362 (13%), Positives = 107/362 (29%), Gaps = 46/362 (12%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIE-------QHPWKNITVLNLQNN--- 50
           +++N I      +      +L ++D+S N++  I        +   +    L++  N   
Sbjct: 135 VAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID 194

Query: 51  TIQGTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSG-----TIPPCL 105
            IQ             L  N      +   + +L+ L    L               P +
Sbjct: 195 FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSI 254

Query: 106 --GNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEV 163
             G     +    L            F   + ++ ++ L    +   +   +      + 
Sbjct: 255 MEGLCDVTIDEFRLTYTNDFSDDIVKFHCLA-NVSAMSLAGVSI--KYLEDVPKHFKWQS 311

Query: 164 VNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTG 223
           +++    +   FP+    LP LK L L  N+      +V       +L  +DLS N  + 
Sbjct: 312 LSIIRCQL-KQFPT--LDLPFLKSLTLTMNKGSISFKKVA----LPSLSYLDLSRNALS- 363

Query: 224 FLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDL 283
           F     +  L T           L +            + +    + L+ +      +D 
Sbjct: 364 FSGCCSYSDLGTNSLRH------LDLSFNG-------AIIMSANFMGLEEL----QHLDF 406

Query: 284 SSNQFQGEIP-QVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPE 342
             +  +           + L+ L++S+          F  +  L +L ++ N        
Sbjct: 407 QHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLS 466

Query: 343 QF 344
             
Sbjct: 467 NV 468

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  106 bits (266), Expect = 2e-25
 Identities = 46/346 (13%), Positives = 100/346 (28%), Gaps = 34/346 (9%)

Query: 22  TYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLF------SNNKLFG 75
                 +  L+++      +   ++L  N ++    +   S   F        S  ++  
Sbjct: 14  ITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKI---LKSYSFSNFSELQWLDLSRCEIET 70

Query: 76  QIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSC 135
               + + L  L  + L+ N +    P       T L  L      L             
Sbjct: 71  IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGL-TSLENLVAVETKLASLESFPIGQLI- 128

Query: 136 DLRSLGLNSNKLRG-SFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNR 194
            L+ L +  N +     P Y ++ T L  V++  N I     + L  L     + L  + 
Sbjct: 129 TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDM 188

Query: 195 FYGPLCEVNIMLPFEA--LRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGE 252
              P+  +     F+   L  + L  N  +  + +    +L  +        +    +  
Sbjct: 189 SLNPIDFIQD-QAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL 247

Query: 253 EDYYQDSVTVTVKGRDLVLK----RIITIF----------TTIDLSSNQFQGEIPQVLGD 298
           E +    +           +       +            + + L+    +  +  V   
Sbjct: 248 EIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLEDVPKH 306

Query: 299 FKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQF 344
           F     L++    L         ++  L+SL L+ NK      +  
Sbjct: 307 F-KWQSLSIIRCQLKQ---FPTLDLPFLKSLTLTMNKGSISFKKVA 348

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 98.6 bits (246), Expect = 9e-23
 Identities = 52/289 (17%), Positives = 85/289 (29%), Gaps = 53/289 (18%)

Query: 69  SNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPD 128
            + KL  ++P  I   SS + I LS N L         NF ++L  L L+   ++     
Sbjct: 19  MDQKLS-KVPDDI--PSSTKNIDLSFNPLKILKSYSFSNF-SELQWLDLSRCEIETIEDK 74

Query: 129 AFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKIL 188
           A+      L +L L  N ++   P   +  T LE +      +       +G L  LK L
Sbjct: 75  AWHGLH-HLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKL 133

Query: 189 VLRSNRFYGPLCEVNIMLPFE---ALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSD 245
            +  N  +       +   F     L  +DLS+N     +       L     V+     
Sbjct: 134 NVAHNFIHS----CKLPAYFSNLTNLVHVDLSYNYIQT-ITVNDLQFLRENPQVNL---- 184

Query: 246 GLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVL 305
                                             ++D+S N       Q       L  L
Sbjct: 185 ----------------------------------SLDMSLNPIDFIQDQAFQGI-KLHEL 209

Query: 306 NLSHNGLTGSIP-VSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSF 353
            L  N  + +I      N+  L    L   +       +  +  I    
Sbjct: 210 TLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL 258

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 71.2 bits (175), Expect = 1e-13
 Identities = 36/275 (13%), Positives = 78/275 (28%), Gaps = 80/275 (29%)

Query: 75  GQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGS 134
           G + P I  + ++ Y       LS  +P    +  +    + L+ N L+     +F+N S
Sbjct: 2   GSLNPCIEVVPNITY-QCMDQKLS-KVPD---DIPSSTKNIDLSFNPLKILKSYSFSNFS 56

Query: 135 CDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNR 194
            +L+ L L+  ++     +       L  + +  N I    P     L  L+ L      
Sbjct: 57  -ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENL------ 109

Query: 195 FYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEED 254
                                    +            +  +  +               
Sbjct: 110 --------------------VAVETKLASLESF----PIGQLITL--------------- 130

Query: 255 YYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQG-EIPQVLGDFKSLIVLNLSHNGLT 313
                                     ++++ N     ++P    +  +L+ ++LS+N + 
Sbjct: 131 ------------------------KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166

Query: 314 GSIPVSFANM----IVLESLDLSSNKLHGRIPEQF 344
                    +     V  SLD+S N +     + F
Sbjct: 167 TITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAF 201

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  111 bits (279), Expect = 4e-27
 Identities = 58/341 (17%), Positives = 112/341 (32%), Gaps = 13/341 (3%)

Query: 20  SLTYLDISNNFLTQIEQ---HPWKNITVLNLQNN---TIQGTILVPPPSTRAFLFSNNKL 73
           ++  LD+S N +T I         N+ VL L+++   TI+G       S      S+N L
Sbjct: 27  AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86

Query: 74  FGQIPPSIYS-LSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFAN 132
              +  S +  LSSL+Y++L  N         L    T L  L + N      I      
Sbjct: 87  -SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA 145

Query: 133 GSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRS 192
           G   L  L + +  LR    + L     +  + +  +        +   L  ++ L LR 
Sbjct: 146 GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD 205

Query: 193 NRFYG-PLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQG 251
                     + +      ++ +    +  T      +   L  +  + E   D   + G
Sbjct: 206 TNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265

Query: 252 EEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNG 311
             D+      V  +   +    I      + +       ++  V    + +  + + ++ 
Sbjct: 266 LGDFNPSESDVVSELGKVETVTI----RRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK 321

Query: 312 LTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSS 352
           +         ++  LE LDLS N +     +         S
Sbjct: 322 VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPS 362

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  106 bits (267), Expect = 2e-25
 Identities = 60/378 (15%), Positives = 124/378 (32%), Gaps = 38/378 (10%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNN---TIQG 54
           LS N+I   I   D +   +L  L + ++ +  IE    +   ++  L+L +N   ++  
Sbjct: 33  LSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS 91

Query: 55  TILVPPPSTRAFLFSNNKLFG-QIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLT 113
           +   P  S +      N      +     +L++L+ + + +      I        T L 
Sbjct: 92  SWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLN 151

Query: 114 ILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGD 173
            L +    L+     +  +   D+  L L+ ++       +    + +  + + +  +  
Sbjct: 152 ELEIKALSLRNYQSQSLKSIR-DIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLAR 210

Query: 174 TFPSWLGSLPGLKILVLRSNR--------FYGPLCEVNIMLPFEALRIIDLSHNEFTGFL 225
              S L        +   + R        F   L  +  +L    +   D + N   G  
Sbjct: 211 FQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGL-GDF 269

Query: 226 PRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGR----DLVLKRIITI---- 277
                  +  +  V+      L++     +Y  S   ++  +     +   ++  +    
Sbjct: 270 NPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSF 329

Query: 278 ------FTTIDLSSNQFQGEI---PQVLGDFKSLIVLNLSHNGLT--GSIPVSFANMIVL 326
                    +DLS N    E        G + SL  L LS N L            +  L
Sbjct: 330 SQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNL 389

Query: 327 ESLDLSSNKLHGRIPEQF 344
            SLD+S N  H  +P+  
Sbjct: 390 TSLDISRNTFH-PMPDSC 406

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 87.1 bits (216), Expect = 6e-19
 Identities = 60/364 (16%), Positives = 126/364 (34%), Gaps = 48/364 (13%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPW----KNITVLNLQNN----TI 52
           LS+N +   +S S      SL YL++  N    +          N+  L + N      I
Sbjct: 81  LSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEI 139

Query: 53  QGTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQL 112
           +        S          L      S+ S+  + +++L  +  +  +     +  + +
Sbjct: 140 RRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSV 198

Query: 113 TILHLNNNYLQGRIPDAFANG--SCDLRSLGLNSNKLRG-------SFPRYLADCTGLEV 163
             L L +  L             S  ++ L    + L            RY+ + + +E 
Sbjct: 199 RYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEF 258

Query: 164 VNVGNNMIGDTFPSWLGSLPG--------LKILVLRSNRFYGPLCEVNIMLPFEALRIID 215
            +   N +GD  PS    +          ++ L +     +  L  V  +L    ++ I 
Sbjct: 259 DDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLE--KVKRIT 316

Query: 216 LSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRII 275
           + +++    +P      L++++ +D      L          +++ V    ++   K   
Sbjct: 317 VENSKVF-LVPCSFSQHLKSLEFLD------LS---------ENLMVEEYLKNSACKGAW 360

Query: 276 TIFTTIDLSSNQFQ--GEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSS 333
               T+ LS N  +   +  ++L   K+L  L++S N     +P S      +  L+LSS
Sbjct: 361 PSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSS 419

Query: 334 NKLH 337
             + 
Sbjct: 420 TGIR 423

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 86.7 bits (215), Expect = 9e-19
 Identities = 56/370 (15%), Positives = 125/370 (33%), Gaps = 47/370 (12%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQH---PWKNITVLNLQNNTIQGTIL 57
           +    +R        +  + + +L +  +    + +       ++  L L++  +     
Sbjct: 155 IKALSLR-NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQF 213

Query: 58  VPPPSTRAFL------FSNNKL-------FGQIPPSIYSLSSLEYISLSHNNLSGTIPPC 104
            P P            F  + L         ++   I  LS +E+   + N L    P  
Sbjct: 214 SPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSE 273

Query: 105 LGNFS-------TQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLAD 157
               S         +  LH+   YL   +   ++     ++ + + ++K+      +   
Sbjct: 274 SDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLE-KVKRITVENSKVFLVPCSFSQH 332

Query: 158 CTGLEVVNVGNNMIGDTF---PSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRII 214
              LE +++  N++ + +    +  G+ P L+ LVL  N          I+L  + L  +
Sbjct: 333 LKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSL 392

Query: 215 DLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQG-EEDYYQDSVTVTVKGRDLVLKR 273
           D+S N F            E M+         L +        +  +  T++  D+    
Sbjct: 393 DISRNTFHPMPDS--CQWPEKMRF--------LNLSSTGIRVVKTCIPQTLEVLDVSNNN 442

Query: 274 IITIF------TTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLE 327
           + +          + +S N+ +  +P     F  L+V+ +S N L       F  +  L+
Sbjct: 443 LDSFSLFLPRLQELYISRNKLK-TLPDASL-FPVLLVMKISRNQLKSVPDGIFDRLTSLQ 500

Query: 328 SLDLSSNKLH 337
            + L +N   
Sbjct: 501 KIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 80.2 bits (198), Expect = 1e-16
 Identities = 40/343 (11%), Positives = 96/343 (27%), Gaps = 52/343 (15%)

Query: 20  SLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPP 79
           +    D  +   T I       +  L+L  N I                        I  
Sbjct: 6   ASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKIT----------------------YIGH 43

Query: 80  -SIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFAN------ 132
             + + ++L+ + L  + ++ TI          L  L L++N+L       F        
Sbjct: 44  GDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKY 102

Query: 133 ------------------GSCDLRSLGL-NSNKLRGSFPRYLADCTGLEVVNVGNNMIGD 173
                                +L++L + N            A  T L  + +    + +
Sbjct: 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162

Query: 174 TFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSL 233
                L S+  +  L L  +                ++R ++L       F         
Sbjct: 163 YQSQSLKSIRDIHHLTLHLSES--AFLLEIFADILSSVRYLELRDTNLARF-QFSPLPVD 219

Query: 234 ETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIP 293
           E    + +    G  +  E       +   +     V     T+    D + ++      
Sbjct: 220 EVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSE 279

Query: 294 QVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKL 336
               +  ++  L++    L   +   ++ +  ++ + + ++K+
Sbjct: 280 LGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV 322

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 77.8 bits (192), Expect = 6e-16
 Identities = 35/255 (13%), Positives = 77/255 (30%), Gaps = 50/255 (19%)

Query: 83  SLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGL 142
           S  +         + + +IP      +  +  L L+ N +           + +L+ L L
Sbjct: 3   SCDASGVCDGRSRSFT-SIPS---GLTAAMKSLDLSFNKITYIGHGDLRACA-NLQVLIL 57

Query: 143 NSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYG-PLCE 201
            S+++             LE +++ +N +     SW G L  LK L L  N +    +  
Sbjct: 58  KSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS 117

Query: 202 VNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVT 261
           +   L    L+ + + + E    + R  F  L ++                         
Sbjct: 118 LFPNLT--NLQTLRIGNVETFSEIRRIDFAGLTSLN------------------------ 151

Query: 262 VTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFA 321
                              +++ +   +    Q L   + +  L L  +     + +   
Sbjct: 152 ------------------ELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFAD 193

Query: 322 NMIVLESLDLSSNKL 336
            +  +  L+L    L
Sbjct: 194 ILSSVRYLELRDTNL 208

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 3/59 (5%)

Query: 279 TTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLH 337
              D  S  F   IP  L    ++  L+LS N +T            L+ L L S++++
Sbjct: 8   GVCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN 63

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  111 bits (279), Expect = 6e-27
 Identities = 61/331 (18%), Positives = 105/331 (31%), Gaps = 21/331 (6%)

Query: 20  SLTYLDISNNFLTQIEQHPWKNITVLNLQNN---TIQGTILVPPPSTRAFLFSNNKLFGQ 76
                      LTQ+ Q        L L  N   T+  +        +     +      
Sbjct: 5   DGRIAFYRFCNLTQVPQVL-NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT 63

Query: 77  IPP-SIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRI--PDAFANG 133
           I   +  +L +L  + L  + +   + P        L  L L    L   +     F N 
Sbjct: 64  IDKEAFRNLPNLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL 122

Query: 134 SCDLRSLGLNSNKLRG-SFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSL--PGLKILVL 190
              L  L L+ N++R             L+ ++  +N I       L  L    L    L
Sbjct: 123 K-ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181

Query: 191 RSNRFYG--PLCEVNIMLPFE--ALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDG 246
            +N  Y    +     M PF    L I+D+S N +T  +      ++   +      +  
Sbjct: 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH 241

Query: 247 LYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLN 306
           +   G   +           ++       +    +DLS         +V    K L VLN
Sbjct: 242 IMGAGFGFHNIKDPD-----QNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLN 296

Query: 307 LSHNGLTGSIPVSFANMIVLESLDLSSNKLH 337
           L++N +      +F  +  L+ L+LS N L 
Sbjct: 297 LAYNKINKIADEAFYGLDNLQVLNLSYNLLG 327

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  106 bits (267), Expect = 2e-25
 Identities = 58/349 (16%), Positives = 113/349 (32%), Gaps = 40/349 (11%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGTIL 57
           L +      I K   +   +L  LD+ ++ +  +         ++  L L    +   +L
Sbjct: 55  LGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVL 114

Query: 58  VPPPSTRAFL-------FSNNKLFG-QIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFS 109
                    L        S N++    + PS   L+SL+ I  S N +       L    
Sbjct: 115 --KDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQ 172

Query: 110 -TQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGN 168
              L+   L  N L  R+   +       R++ L    + G+          +++    +
Sbjct: 173 GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWT-------VDITGNFS 225

Query: 169 NMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRW 228
           N I  +    L     +       +    P       L   ++R +DLSH      L   
Sbjct: 226 NAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF-SLNSR 284

Query: 229 IFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQF 288
           +F +L+ +K ++   +    +  E  Y  D++                    ++LS N  
Sbjct: 285 VFETLKDLKVLNLAYNKINKIADEAFYGLDNL------------------QVLNLSYNLL 326

Query: 289 QGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLH 337
                        +  ++L  N +      +F  +  L++LDL  N L 
Sbjct: 327 GELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  105 bits (264), Expect = 5e-25
 Identities = 67/380 (17%), Positives = 125/380 (32%), Gaps = 48/380 (12%)

Query: 1   LSNNRIRGRISKSDSQRW-KSLTYLDISNNFLTQIEQHP----WKNITVLNLQNN---TI 52
           L    +   + K    R  K+LT LD+S N +  +  HP      ++  ++  +N    +
Sbjct: 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163

Query: 53  QGTILVP--PPSTRAFLFSNNKLFGQIPPSIYSLS------SLEYISLSHNNLSGTIPPC 104
               L P    +   F  + N L+ ++               LE + +S N  +  I   
Sbjct: 164 CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGN 223

Query: 105 LGNF-----------STQLTILHLNNNYLQGRIPDAFAN-GSCDLRSLGLNSNKLRGSFP 152
             N            +  +       + ++    + FA      +R L L+   +     
Sbjct: 224 FSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS 283

Query: 153 RYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALR 212
           R       L+V+N+  N I          L  L++L L  N         +       + 
Sbjct: 284 RVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL--GELYSSNFYGLPKVA 341

Query: 213 IIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLK 272
            IDL  N     +    F  LE ++ +D + +    +             ++    L   
Sbjct: 342 YIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALTTIHF---------IPSIPDIFLSGN 391

Query: 273 RIITIFT------TIDLSSNQFQG-EIPQVLGDFKSLIVLNLSHNGLTG-SIPVSFANMI 324
           +++T+         I LS N+ +  +I   L     L +L L+ N  +  S   + +   
Sbjct: 392 KLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENP 451

Query: 325 VLESLDLSSNKLHGRIPEQF 344
            LE L L  N L      + 
Sbjct: 452 SLEQLFLGENMLQLAWETEL 471

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  103 bits (258), Expect = 3e-24
 Identities = 67/376 (17%), Positives = 122/376 (32%), Gaps = 53/376 (14%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPP 60
           LS N+IR         +  SL  +D S+N +  + +H  + +    L   ++    L   
Sbjct: 130 LSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSR 189

Query: 61  PSTRAFL--------------FSNNKLFGQIP------------PSIYSLSSLEYISLSH 94
            S                    S N     I              S+     +       
Sbjct: 190 VSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGF 249

Query: 95  NNLSGTIPPCL--GNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFP 152
           +N+          G   + +  L L++ ++       F     DL+ L L  NK+     
Sbjct: 250 HNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLK-DLKVLNLAYNKINKIAD 307

Query: 153 RYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALR 212
                   L+V+N+  N++G+ + S    LP +  + L+ N       +    L    L+
Sbjct: 308 EAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEK--LQ 365

Query: 213 IIDLSHNEFTGF--LP--RWIFVSLETMKNVDEKGSDG--LYMQGEEDYYQDSVTVTVKG 266
            +DL  N  T    +P    IF+S   +  + +       +++        D +   ++ 
Sbjct: 366 TLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRV 425

Query: 267 RDLVLKRIITIFTTIDLSSNQFQG-EIPQVLGDFKSLIVLNLSHNGLTGSIPVS-----F 320
             L           + L+ N+F      Q   +  SL  L L  N L  +         F
Sbjct: 426 PHL---------QILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVF 476

Query: 321 ANMIVLESLDLSSNKL 336
             +  L+ L L+ N L
Sbjct: 477 EGLSHLQVLYLNHNYL 492

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 99.5 bits (248), Expect = 6e-23
 Identities = 69/357 (19%), Positives = 118/357 (33%), Gaps = 70/357 (19%)

Query: 1   LSNNRIRGRISKS--DSQRWKSLTYLDISNNFLTQIEQHPW---KNITVLNLQNN---TI 52
              + I+    ++        S+ +LD+S+ F+  +    +   K++ VLNL  N    I
Sbjct: 247 FGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKI 305

Query: 53  QGTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQL 112
                    + +    S N L      + Y L  + YI L  N+++  I      F  +L
Sbjct: 306 ADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKL 364

Query: 113 TILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMI- 171
             L L +N L         +    +  + L+ NKL       L       ++++  N + 
Sbjct: 365 QTLDLRDNALT------TIHFIPSIPDIFLSGNKLVTLPKINLT----ANLIHLSENRLE 414

Query: 172 GDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGF----LPR 227
                 +L  +P L+IL+L  NRF     +        +L  + L  N         L  
Sbjct: 415 NLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSEN-PSLEQLFLGENMLQLAWETELCW 473

Query: 228 WIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQ 287
            +F  L  ++                                           + L+ N 
Sbjct: 474 DVFEGLSHLQ------------------------------------------VLYLNHNY 491

Query: 288 FQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQF 344
                P V     +L  L+L+ N LT            LE LD+S N+L    P+ F
Sbjct: 492 LNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPAN--LEILDISRNQLLAPNPDVF 546

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 98.3 bits (245), Expect = 1e-22
 Identities = 66/365 (18%), Positives = 121/365 (33%), Gaps = 58/365 (15%)

Query: 1   LSNNRIRGRISKS-----DSQRWKSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGT 55
           L+ N +  R+S       +  R   L  LD+S N  T           +    +N I  +
Sbjct: 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVD---------ITGNFSNAISKS 231

Query: 56  ---ILVPPPSTRAFLFSNNKLFGQIPPSIYS---LSSLEYISLSHNNLSGTIPPCLGNFS 109
               L+         F  + +      + ++    SS+ ++ LSH  +  ++   +    
Sbjct: 232 QAFSLILAHHIMGAGFGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVF-SLNSRVFETL 289

Query: 110 TQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNN 169
             L +L+L  N +     +AF     +L+ L L+ N L   +         +  +++  N
Sbjct: 290 KDLKVLNLAYNKINKIADEAFYGLD-NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348

Query: 170 MIGDTFPSWLGSLPGLKILVLRSNRF-----YGPLCEVN------IMLPFEALR--IIDL 216
            I          L  L+ L LR N          + ++       + LP   L   +I L
Sbjct: 349 HIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHL 408

Query: 217 SHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIIT 276
           S N        +  + +  ++ +    +      G+                     +  
Sbjct: 409 SENRLENLDILYFLLRVPHLQILILNQNRFSSCSGD-------------QTPSENPSL-- 453

Query: 277 IFTTIDLSSNQFQGEI-----PQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDL 331
               + L  N  Q          V      L VL L+HN L    P  F+++  L  L L
Sbjct: 454 --EQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSL 511

Query: 332 SSNKL 336
           +SN+L
Sbjct: 512 NSNRL 516

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 89.1 bits (221), Expect = 2e-19
 Identities = 55/245 (22%), Positives = 92/245 (37%), Gaps = 16/245 (6%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPP 60
           L  N I   I     +  + L  LD+ +N LT I  H   +I  + L  N +  T+    
Sbjct: 345 LQKNHIA-IIQDQTFKFLEKLQTLDLRDNALTTI--HFIPSIPDIFLSGNKLV-TLPKIN 400

Query: 61  PSTRAFLFSNNKLFG-QIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNN 119
            +      S N+L    I   +  +  L+ + L+ N  S        + +  L  L L  
Sbjct: 401 LTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGE 460

Query: 120 NYLQGRIPDAFANGSCD----LRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTF 175
           N LQ            +    L+ L LN N L    P   +  T L  +++ +N +    
Sbjct: 461 NMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLS 520

Query: 176 PSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLET 235
            + L     L+IL +  N+   P         F +L ++D++HN+F        F++   
Sbjct: 521 HNDL--PANLEILDISRNQLLAP-----NPDVFVSLSVLDITHNKFICECELSTFINWLN 573

Query: 236 MKNVD 240
             NV 
Sbjct: 574 HTNVT 578

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 87.2 bits (216), Expect = 7e-19
 Identities = 58/347 (16%), Positives = 108/347 (31%), Gaps = 69/347 (19%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNN---TIQG 54
           LS+  +   ++    +  K L  L+++ N + +I     +   N+ VLNL  N    +  
Sbjct: 273 LSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYS 331

Query: 55  TILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTI 114
           +     P         N +      +   L  L+ + L  N L+        +F   +  
Sbjct: 332 SNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI------HFIPSIPD 385

Query: 115 LHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDT 174
           + L+ N L              L    L +  +     R       L+++ +  N     
Sbjct: 386 IFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRV----PHLQILILNQNRFSSC 441

Query: 175 FPSWL-GSLPGLKILVLRSNRF---YGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIF 230
                    P L+ L L  N     +      ++      L+++ L+HN     LP  +F
Sbjct: 442 SGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN-SLPPGVF 500

Query: 231 VSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQG 290
             L  ++                                           + L+SN+   
Sbjct: 501 SHLTALR------------------------------------------GLSLNSNRLTV 518

Query: 291 EIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLH 337
                L    +L +L++S N L    P  F +   L  LD++ NK  
Sbjct: 519 LSHNDL--PANLEILDISRNQLLAPNPDVFVS---LSVLDITHNKFI 560

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 79.5 bits (196), Expect = 3e-16
 Identities = 52/265 (19%), Positives = 82/265 (30%), Gaps = 57/265 (21%)

Query: 92  LSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSF 151
               NL+  +P  L         L L+ NY++     +F      L+ L L S     + 
Sbjct: 11  YRFCNLT-QVPQVL----NTTERLLLSFNYIRTVTASSFPFLE-QLQLLELGSQYTPLTI 64

Query: 152 PRY-LADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEA 210
            +    +   L ++++G++ I    P     L  L  L L        + +       +A
Sbjct: 65  DKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA 124

Query: 211 LRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLV 270
           L  +DLS N+         F  L                                     
Sbjct: 125 LTRLDLSKNQIRSLYLHPSFGKL------------------------------------- 147

Query: 271 LKRIITIFTTIDLSSNQFQGEIPQVLGDF--KSLIVLNLSHNGLTGSIPVSFANM----- 323
                    +ID SSNQ        L     K+L   +L+ N L   + V +        
Sbjct: 148 -----NSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR 202

Query: 324 -IVLESLDLSSNKLHGRIPEQFVDA 347
            +VLE LD+S N     I   F +A
Sbjct: 203 NMVLEILDVSGNGWTVDITGNFSNA 227

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 56.4 bits (136), Expect = 8e-09
 Identities = 39/214 (18%), Positives = 63/214 (29%), Gaps = 51/214 (23%)

Query: 134 SCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSN 193
           S D R        L    P+ L      E + +  N I     S    L  L++L L S 
Sbjct: 3   SFDGRIAFYRFCNLT-QVPQVL---NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQ 58

Query: 194 RFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEE 253
                + +         LRI+DL  ++   FL    F  L  +                 
Sbjct: 59  YTPLTI-DKEAFRNLPNLRILDLGSSKIY-FLHPDAFQGLFHLF---------------- 100

Query: 254 DYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEI--PQVLGDFKSLIVLNLSHNG 311
                                      + L        +       + K+L  L+LS N 
Sbjct: 101 --------------------------ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ 134

Query: 312 LTG-SIPVSFANMIVLESLDLSSNKLHGRIPEQF 344
           +    +  SF  +  L+S+D SSN++      + 
Sbjct: 135 IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHEL 168

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  106 bits (267), Expect = 3e-26
 Identities = 66/345 (19%), Positives = 124/345 (35%), Gaps = 59/345 (17%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ-HPWKNITVLNLQNNTIQGTI-LV 58
           L    +   +++ +    +S+T L ++   +  I+      N+  LNL  N I     L 
Sbjct: 29  LQKASVTDVVTQEEL---ESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLS 85

Query: 59  PPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLN 118
                       NK+      ++ +L++L  + L+ +N+S   P  L N  T++  L+L 
Sbjct: 86  NLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDISP--LANL-TKMYSLNLG 140

Query: 119 NNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSW 178
            N+         +N +  L  L +  +K++   P  +A+ T L  +++  N I D  P  
Sbjct: 141 ANHNLS-DLSPLSNMT-GLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP-- 194

Query: 179 LGSLPGLKILVLRSNRFYG--PLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETM 236
           L SL  L       N+     P+           L  + + +N+ T   P      L  +
Sbjct: 195 LASLTSLHYFTAYVNQITDITPVAN------MTRLNSLKIGNNKITDLSP------LANL 242

Query: 237 KNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIF-----TTIDLSSNQFQGE 291
             +       L +   +                 +  I  +        +++ SNQ    
Sbjct: 243 SQLTW-----LEIGTNQ-----------------ISDINAVKDLTKLKMLNVGSNQISD- 279

Query: 292 IPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKL 336
              VL +   L  L L++N L          +  L +L LS N +
Sbjct: 280 -ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 323

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 96.8 bits (242), Expect = 7e-23
 Identities = 63/343 (18%), Positives = 136/343 (39%), Gaps = 55/343 (16%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ-HPWKNITVLNLQNNTIQG-TILV 58
           ++  ++    S    +   +L YL+++ N +T I        +T L +  N I   + L 
Sbjct: 51  VAGEKVA---SIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQ 107

Query: 59  PPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLN 118
              + R    + + +       + +L+ +  ++L  N+    + P L N  T L  L + 
Sbjct: 108 NLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSDLSP-LSNM-TGLNYLTVT 163

Query: 119 NNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSW 178
            + ++   P   AN + DL SL LN N++    P  LA  T L       N I D   + 
Sbjct: 164 ESKVKDVTP--IANLT-DLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD--ITP 216

Query: 179 LGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKN 238
           + ++  L  L + +N+    + +++ +     L  +++  N+ +         +++ +  
Sbjct: 217 VANMTRLNSLKIGNNK----ITDLSPLANLSQLTWLEIGTNQISDI------NAVKDLTK 266

Query: 239 VDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIF-----TTIDLSSNQFQGEIP 293
           +       L +   +                 +  I  +       ++ L++NQ   E  
Sbjct: 267 LKM-----LNVGSNQ-----------------ISDISVLNNLSQLNSLFLNNNQLGNEDM 304

Query: 294 QVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKL 336
           +V+G   +L  L LS N +T   P   A++  ++S D ++  +
Sbjct: 305 EVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 87.6 bits (218), Expect = 1e-19
 Identities = 58/323 (17%), Positives = 121/323 (37%), Gaps = 54/323 (16%)

Query: 21  LTYLDISNNFLTQIEQHP-WKNITVLNLQNNTIQGTI-LVPPPSTRAFLFSNNKLFGQIP 78
              L      + QI             LQ  ++   +      S    + +  K+     
Sbjct: 2   AATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKV--ASI 59

Query: 79  PSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLR 138
             I  L++LEY++L+ N ++   P  L N   +LT L++  N +      A  N + +LR
Sbjct: 60  QGIEYLTNLEYLNLNGNQITDISP--LSNL-VKLTNLYIGTNKIT--DISALQNLT-NLR 113

Query: 139 SLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGP 198
            L LN + +    P  LA+ T +  +N+G N    +  S L ++ GL  L +  ++    
Sbjct: 114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESK---- 166

Query: 199 LCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQD 258
           + +V  +     L  + L++N+     P      L ++ ++             +     
Sbjct: 167 VKDVTPIANLTDLYSLSLNYNQIEDISP------LASLTSLHY-----FTAYVNQ----- 210

Query: 259 SVTVTVKGRDLVLKRIITIF-----TTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLT 313
                       +  I  +       ++ + +N+     P  L +   L  L +  N ++
Sbjct: 211 ------------ITDITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQIS 256

Query: 314 GSIPVSFANMIVLESLDLSSNKL 336
             I  +  ++  L+ L++ SN++
Sbjct: 257 -DIN-AVKDLTKLKMLNVGSNQI 277

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 77.2 bits (191), Expect = 5e-16
 Identities = 59/318 (18%), Positives = 118/318 (37%), Gaps = 49/318 (15%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ-HPWKNITVLNLQNNTIQGTILVP 59
           L+ N+I      S       LT L I  N +T I       N+  L L  + I     + 
Sbjct: 73  LNGNQIT---DISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISD---IS 126

Query: 60  P----PSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTIL 115
           P        +     N         + +++ L Y++++ + +    P  + N  T L  L
Sbjct: 127 PLANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVTP--IANL-TDLYSL 182

Query: 116 HLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTF 175
            LN N ++       A+ +  L       N++    P  +A+ T L  + +GNN I D  
Sbjct: 183 SLNYNQIED--ISPLASLT-SLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLS 237

Query: 176 PSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLET 235
           P  L +L  L  L + +N+    + ++N +     L+++++  N+ +          L  
Sbjct: 238 P--LANLSQLTWLEIGTNQ----ISDINAVKDLTKLKMLNVGSNQISDISV------LNN 285

Query: 236 MKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQV 295
           +  ++      L++   +          +   D+ +   +T  TT+ LS N      P  
Sbjct: 286 LSQLNS-----LFLNNNQ----------LGNEDMEVIGGLTNLTTLFLSQNHITDIRP-- 328

Query: 296 LGDFKSLIVLNLSHNGLT 313
           L     +   + ++  + 
Sbjct: 329 LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.5 bits (119), Expect = 6e-07
 Identities = 28/206 (13%), Positives = 59/206 (28%), Gaps = 57/206 (27%)

Query: 137 LRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFY 196
             +L      +   FP   AD        +    + D        L  +  LV+   +  
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEK-- 55

Query: 197 GPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYY 256
             +  +  +     L  ++L+ N+ T   P      L  +  +                 
Sbjct: 56  --VASIQGIEYLTNLEYLNLNGNQITDISP------LSNLVKL----------------- 90

Query: 257 QDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSI 316
                                 T + + +N+        L +  +L  L L+ + ++   
Sbjct: 91  ----------------------TNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDIS 126

Query: 317 PVSFANMIVLESLDLSSNKLHGRIPE 342
           P   AN+  + SL+L +N     +  
Sbjct: 127 P--LANLTKMYSLNLGANHNLSDLSP 150

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.1 bits (105), Expect = 4e-05
 Identities = 23/179 (12%), Positives = 47/179 (26%), Gaps = 55/179 (30%)

Query: 160 GLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHN 219
           G   +      I   FP     L      VL+       + +       E++  + ++  
Sbjct: 1   GAATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVTQEE----LESITKLVVAGE 54

Query: 220 EFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFT 279
           +            +E + N+                                        
Sbjct: 55  KVASIQG------IEYLTNL---------------------------------------E 69

Query: 280 TIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHG 338
            ++L+ NQ     P  L +   L  L +  N +T     +  N+  L  L L+ + +  
Sbjct: 70  YLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISD 124

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  107 bits (269), Expect = 4e-26
 Identities = 66/353 (18%), Positives = 116/353 (32%), Gaps = 74/353 (20%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNN---TIQG 54
           L  NRI+  +++ +   +  L  L+++ N ++ +E    +   N+  L L++N    I  
Sbjct: 39  LGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPL 97

Query: 55  TILVPPPSTRAFLFSNNKLFGQIPPSI-YSLSSLEYISLSHNNLSGTIPPCLGNFS--TQ 111
            +     +      S NK+   +   +   L +L+ + +  N+L   I      FS    
Sbjct: 98  GVFTGLSNLTKLDISENKI-VILLDYMFQDLYNLKSLEVGDNDLV-YISH--RAFSGLNS 153

Query: 112 LTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMI 171
           L  L L    L     +A ++    L  L L    +             L+V+ + +   
Sbjct: 154 LEQLTLEKCNLTSIPTEALSHLHG-LIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212

Query: 172 GDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEA------LRIIDLSHNEFTGFL 225
            DT          L  L +               +P+ A      LR ++LS+N  +  +
Sbjct: 213 LDTMTPNCLYGLNLTSLSITHCNL--------TAVPYLAVRHLVYLRFLNLSYNPIS-TI 263

Query: 226 PRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSS 285
              +   L  +                                            I L  
Sbjct: 264 EGSMLHELLRL------------------------------------------QEIQLVG 281

Query: 286 NQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVS-FANMIVLESLDLSSNKLH 337
            Q     P        L VLN+S N LT ++  S F ++  LE+L L SN L 
Sbjct: 282 GQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  100 bits (252), Expect = 1e-23
 Identities = 56/327 (17%), Positives = 103/327 (31%), Gaps = 59/327 (18%)

Query: 20  SLTYLDISNNFLTQIEQHPWKNIT---VLNLQNN---TIQGTILVPPPSTRAFLFSNNKL 73
               LD+  N +  + Q  + +      L L  N    ++        + R     +N+L
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92

Query: 74  FGQIPPSIYS-LSSLEYISLSHNNLSGTIPPCLGNFS--TQLTILHLNNNYLQGRIPDAF 130
              IP  +++ LS+L  + +S N +   +      F     L  L + +N L      AF
Sbjct: 93  -KLIPLGVFTGLSNLTKLDISENKIV-ILLD--YMFQDLYNLKSLEVGDNDLVYISHRAF 148

Query: 131 ANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVL 190
           +  +  L  L L    L       L+   GL V+ + +  I          L  LK+L +
Sbjct: 149 SGLN-SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEI 207

Query: 191 RSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQ 250
               +   +    +      L  + ++H   T  +P      L  ++             
Sbjct: 208 SHWPYLDTMTPNCLYGL--NLTSLSITHCNLTA-VPYLAVRHLVYLR------------- 251

Query: 251 GEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHN 310
                                         ++LS N        +L +   L  + L   
Sbjct: 252 -----------------------------FLNLSYNPISTIEGSMLHELLRLQEIQLVGG 282

Query: 311 GLTGSIPVSFANMIVLESLDLSSNKLH 337
            L    P +F  +  L  L++S N+L 
Sbjct: 283 QLAVVEPYAFRGLNYLRVLNVSGNQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 99.8 bits (249), Expect = 2e-23
 Identities = 49/323 (15%), Positives = 97/323 (30%), Gaps = 54/323 (16%)

Query: 20  SLTYLDISNNFLTQIEQHPWKNITVLNLQNN---TIQGTILVPPPSTRAFLFSNNKLFGQ 76
               +         + +       +L+L  N   T+        P       + N +   
Sbjct: 12  QDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV-SA 70

Query: 77  IPPSI-YSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSC 135
           + P    +L +L  + L  N L   IP  +    + LT L ++ N +   +   F +   
Sbjct: 71  VEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY- 128

Query: 136 DLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRF 195
           +L+SL +  N L     R  +    LE + +    +       L  L GL +L LR    
Sbjct: 129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI 188

Query: 196 YGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDY 255
                          L+++++SH  +   +       L                      
Sbjct: 189 NAI--RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNL-------------------- 226

Query: 256 YQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIP-QVLGDFKSLIVLNLSHNGLTG 314
                                  T++ ++       +P   +     L  LNLS+N ++ 
Sbjct: 227 -----------------------TSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIST 262

Query: 315 SIPVSFANMIVLESLDLSSNKLH 337
                   ++ L+ + L   +L 
Sbjct: 263 IEGSMLHELLRLQEIQLVGGQLA 285

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 62.0 bits (151), Expect = 9e-11
 Identities = 46/237 (19%), Positives = 81/237 (34%), Gaps = 27/237 (11%)

Query: 109 STQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGN 168
           S Q   +  +       +P+       + R L L  N+++       A    LE + +  
Sbjct: 10  SAQDRAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNE 65

Query: 169 NMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRW 228
           N++    P    +L  L+ L LRSNR    L  + +      L  +D+S N+    L  +
Sbjct: 66  NIVSAVEPGAFNNLFNLRTLGLRSNRL--KLIPLGVFTGLSNLTKLDISENKIV-ILLDY 122

Query: 229 IFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLV-LKRIITIFTTIDLSSNQ 287
           +F  L  +K+        L +   +        V +  R    L  +      + L    
Sbjct: 123 MFQDLYNLKS--------LEVGDND-------LVYISHRAFSGLNSL----EQLTLEKCN 163

Query: 288 FQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQF 344
                 + L     LIVL L H  +      SF  +  L+ L++S       +    
Sbjct: 164 LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC 220

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 59.3 bits (144), Expect = 6e-10
 Identities = 36/167 (21%), Positives = 66/167 (39%), Gaps = 21/167 (12%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPW---KNITVLNLQNN---TIQG 54
           +S+      ++  +     +LT L I++  LT +          +  LNL  N   TI+G
Sbjct: 207 ISHWPYLDTMT-PNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEG 265

Query: 55  TILVPPPSTRAFLFSNNKLFGQIPPSIYS-LSSLEYISLSHNNLSGTIPPCLGNFSTQLT 113
           ++L      +       +L   + P  +  L+ L  +++S N L+ T+   + +    L 
Sbjct: 266 SMLHELLRLQEIQLVGGQL-AVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLE 323

Query: 114 ILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTG 160
            L L++N L            CD R L +   + R +F R    C  
Sbjct: 324 TLILDSNPLA-----------CDCRLLWVFRRRWRLNFNRQQPTCAT 359

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  106 bits (267), Expect = 1e-25
 Identities = 70/363 (19%), Positives = 122/363 (33%), Gaps = 24/363 (6%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQG--- 54
           LS N +R  +       +  L  LD+S   +  IE        +++ L L  N IQ    
Sbjct: 35  LSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 93

Query: 55  TILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTI 114
                  S +  +     L       I  L +L+ ++++HN +     P   +  T L  
Sbjct: 94  GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153

Query: 115 LHLNNNYLQGRIPDAFA---NGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMI 171
           L L++N +Q                  SL L+ N +             L  + + NN  
Sbjct: 154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFD 212

Query: 172 GDTFPS-WLGSLPGLKILVLRSNRFYG-PLCEVNIMLPFEALRIIDLSHNEFTG--FLPR 227
                   +  L GL++  L    F      E       E L  + +         +   
Sbjct: 213 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD 272

Query: 228 WIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITI----FTTIDL 283
            I      + NV       + ++  +D+  +     ++  +    +  T+       +  
Sbjct: 273 DIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTF 332

Query: 284 SSNQFQGEIPQVLGDFKSLIVLNLSHNGLT--GSIPVSFANMIVLESLDLSSNKLHGRIP 341
           +SN+      +V  D  SL  L+LS NGL+  G    S      L+ LDLS N +   + 
Sbjct: 333 TSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMS 389

Query: 342 EQF 344
             F
Sbjct: 390 SNF 392

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 99.8 bits (249), Expect = 3e-23
 Identities = 42/224 (18%), Positives = 80/224 (35%), Gaps = 17/224 (7%)

Query: 19  KSLTYLDISNNFLTQI-EQHPWKNITVLNLQNNTIQ-----GTILVPPPSTRAFLFSNNK 72
           KSL  L  ++N       +    ++  L+L  N +              S +    S N 
Sbjct: 325 KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG 384

Query: 73  LFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFAN 132
           +   +  +   L  LE++   H+NL       +      L  L +++ + +      F N
Sbjct: 385 VI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF-N 442

Query: 133 GSCDLRSLGLNSNKLRGSFPRY-LADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLR 191
           G   L  L +  N  + +F      +   L  +++    +    P+   SL  L++L + 
Sbjct: 443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA 502

Query: 192 SNRFYGPLCEVNIMLPFEALRIIDLSHNEFT------GFLPRWI 229
           SN+         I     +L+ I L  N +        +L RW+
Sbjct: 503 SNQLKSV--PDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL 544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 97.1 bits (242), Expect = 3e-22
 Identities = 63/366 (17%), Positives = 118/366 (32%), Gaps = 44/366 (12%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQH---PWKNITVLNLQNN---TIQG 54
           LS   I+  I     Q    L+ L ++ N +  +         ++  L        +++ 
Sbjct: 59  LSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN 117

Query: 55  TILVPPPSTRAFLFSNNKL-FGQIPPSIYSLSSLEYISLSHNNLSGTIPP----CLGNFS 109
             +    + +    ++N +   ++P    +L++LE++ LS N +  +I       L    
Sbjct: 118 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMP 176

Query: 110 TQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPR-YLADCTGLEVVN--- 165
                L L+ N +    P AF      L  L L +N    +  +  +    GLEV     
Sbjct: 177 LLNLSLDLSLNPMNFIQPGAFKEIR--LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL 234

Query: 166 ---VGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLP-FEALRIIDLSHNEF 221
                   +     S L  L  L I   R       L ++  +      +    L     
Sbjct: 235 GEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI 294

Query: 222 TGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIF--- 278
                       + ++           +  +   +      ++K       +    F   
Sbjct: 295 ERVKDFSYNFGWQHLE----------LVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV 344

Query: 279 -----TTIDLSSNQ--FQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDL 331
                  +DLS N   F+G   Q      SL  L+LS NG+  ++  +F  +  LE LD 
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDF 403

Query: 332 SSNKLH 337
             + L 
Sbjct: 404 QHSNLK 409

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 94.8 bits (236), Expect = 2e-21
 Identities = 55/339 (16%), Positives = 93/339 (27%), Gaps = 73/339 (21%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHP-WKNITVLNLQNNTIQGTILVP 59
           L+                 +++   + +  + +++          L L N        + 
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLK 323

Query: 60  PPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSG-TIPPCLGNFSTQLTILHLN 118
             S +   F++NK       S   L SLE++ LS N LS           +T L  L L+
Sbjct: 324 LKSLKRLTFTSNKG--GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381

Query: 119 NNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSW 178
            N +   +   F      L  L    + L+      +                       
Sbjct: 382 FNGVI-TMSSNFLGLE-QLEHLDFQHSNLKQMSEFSV----------------------- 416

Query: 179 LGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKN 238
             SL  L  L +             I     +L ++ ++ N F       IF  L  +  
Sbjct: 417 FLSLRNLIYLDISHTHTRV--AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL-- 472

Query: 239 VDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGD 298
                                                   T +DLS  Q +   P     
Sbjct: 473 ----------------------------------------TFLDLSQCQLEQLSPTAFNS 492

Query: 299 FKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLH 337
             SL VLN++ N L       F  +  L+ + L +N   
Sbjct: 493 LSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 87.1 bits (216), Expect = 6e-19
 Identities = 64/342 (18%), Positives = 122/342 (35%), Gaps = 34/342 (9%)

Query: 20  SLTYLDISNNFLTQIEQ---HPWKNITVLNLQNN---TIQGTILVPPPSTRAFLFSNNKL 73
           S   LD+S N L  +       +  + VL+L      TI+             + + N +
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 74  FGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQ-GRIPDAFAN 132
                 +   LSSL+ +     NL+      +G+    L  L++ +N +Q  ++P+ F+N
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENFPIGH-LKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 133 GSCDLRSLGLNSNKLRGSFPRYLADCTGLEVV----NVGNNMIGDTFPSWLGSLPGLKIL 188
            + +L  L L+SNK++  +   L     + ++    ++  N + +           L  L
Sbjct: 148 LT-NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAFKEIRLHKL 205

Query: 189 VLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLY 248
            LR+N     + +   +     L +  L   EF              ++ +     +   
Sbjct: 206 TLRNNFDSLNVMK-TCIQGLAGLEVHRLVLGEFRNE-GNLEKFDKSALEGLCNLTIEEFR 263

Query: 249 MQGEEDYYQDSVTV-----TVKGRDLVLKRIITIF--------TTIDLSSNQFQGEIPQV 295
           +   + Y  D + +      V    LV   I  +           ++L + +F       
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLK 323

Query: 296 LGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLH 337
           L   K    L  + N    +   S  ++  LE LDLS N L 
Sbjct: 324 LKSLKR---LTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLS 360

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 87.1 bits (216), Expect = 7e-19
 Identities = 54/365 (14%), Positives = 108/365 (29%), Gaps = 51/365 (13%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPW----KNITVLNLQNNTIQG-- 54
                +   +        K+L  L++++N +   +   +     N+  L+L +N IQ   
Sbjct: 107 AVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165

Query: 55  -TILVPPPSTRAFL----FSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFS 109
            T L               S N +   I P  +    L  ++L +N  S  +        
Sbjct: 166 CTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGL 224

Query: 110 TQLTILHLNNNYLQG-----RIPDAFANGSCDLRSLGLNSNKLRGS---FPRYLADCTGL 161
             L +  L     +      +   +   G C+L         L              T +
Sbjct: 225 AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV 284

Query: 162 EVVNVGNNMIGDTFP-SWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNE 220
              ++ +  I      S+      L+++  +  +F          L  ++L+ +  + N+
Sbjct: 285 SSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQF--------PTLKLKSLKRLTFTSNK 336

Query: 221 FTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTT 280
                      SLE            L +      ++   + +  G       +      
Sbjct: 337 GGNAFSEVDLPSLEF-----------LDLSRNGLSFKGCCSQSDFG----TTSL----KY 377

Query: 281 IDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVS-FANMIVLESLDLSSNKLHGR 339
           +DLS N     +       + L  L+  H+ L      S F ++  L  LD+S       
Sbjct: 378 LDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436

Query: 340 IPEQF 344
               F
Sbjct: 437 FNGIF 441

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 85.5 bits (212), Expect = 2e-18
 Identities = 54/357 (15%), Positives = 107/357 (29%), Gaps = 76/357 (21%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDI------SNNFLTQIEQHPWKNITVLNLQNNTIQG 54
           L NN     + K+  Q    L    +      +   L + ++   + +  L ++   +  
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA- 265

Query: 55  TILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTI 114
                           +     I      L+++   SL    +   +     +++     
Sbjct: 266 --------------YLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKD--FSYNFGWQH 308

Query: 115 LHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIG-- 172
           L L N            +    L+ L   SNK   +F     D   LE +++  N +   
Sbjct: 309 LELVNCKFGQFPTLKLKS----LKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFK 362

Query: 173 DTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLP-FEALRIIDLSHNEFTGFLPRWIFV 231
                       LK L L  N     +  ++      E L  +D  H+         +F+
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNG----VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 418

Query: 232 SLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIF----------TTI 281
           SL  +          L +                            F            +
Sbjct: 419 SLRNLIY--------LDISH--------------------THTRVAFNGIFNGLSSLEVL 450

Query: 282 DLSSNQFQGEIPQ-VLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLH 337
            ++ N FQ      +  + ++L  L+LS   L    P +F ++  L+ L+++SN+L 
Sbjct: 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK 507

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 82.8 bits (205), Expect = 2e-17
 Identities = 56/285 (19%), Positives = 95/285 (33%), Gaps = 25/285 (8%)

Query: 60  PPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFS--TQLTILHL 117
           P ST+    S N L      S +S   L+ + LS   +  TI    G +   + L+ L L
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIED--GAYQSLSHLSTLIL 83

Query: 118 NNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGD-TFP 176
             N +Q     AF +G   L+ L      L       +     L+ +NV +N+I     P
Sbjct: 84  TGNPIQSLALGAF-SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142

Query: 177 SWLGSLPGLKILVLRSNRFYGPLCEVNIMLPF--EALRIIDLSHNEFTGFLPRWIFVSLE 234
            +  +L  L+ L L SN+     C    +L         +DLS N    F+    F  + 
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIR 201

Query: 235 TMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQ 294
             K         L ++   + +     +    + L    +  +      +    +     
Sbjct: 202 LHK---------LTLR---NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS 249

Query: 295 VLGDFKSLIVLNLSHNGLTGS---IPVSFANMIVLESLDLSSNKL 336
            L    +L +       L      I   F  +  + S  L S  +
Sbjct: 250 ALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI 294

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 74.0 bits (182), Expect = 1e-14
 Identities = 47/283 (16%), Positives = 85/283 (30%), Gaps = 78/283 (27%)

Query: 69  SNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPD 128
                + +IP ++    S + + LS N L         +F  +L +L L+   +Q     
Sbjct: 15  MELNFY-KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSF-PELQVLDLSRCEIQTIEDG 70

Query: 129 AFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKIL 188
           A+ + S  L +L L  N ++       +  + L+ +      +       +G L  LK L
Sbjct: 71  AYQSLS-HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129

Query: 189 VLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLY 248
                                     +++HN    F     F +L               
Sbjct: 130 --------------------------NVAHNLIQSFKLPEYFSNL--------------- 148

Query: 249 MQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSL----IV 304
                                      T    +DLSSN+ Q      L     +    + 
Sbjct: 149 ---------------------------TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181

Query: 305 LNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDA 347
           L+LS N +    P +F  +  L  L L +N     + +  +  
Sbjct: 182 LDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQG 223

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 67.8 bits (166), Expect = 1e-12
 Identities = 31/156 (19%), Positives = 58/156 (37%), Gaps = 25/156 (16%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPWK---NITVLNLQNNTIQGTIL 57
             ++ ++     S     ++L YLDIS+          +    ++ VL +  N+ Q   L
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462

Query: 58  VPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHL 117
                               P     L +L ++ LS   L   + P   N  + L +L++
Sbjct: 463 --------------------PDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNM 501

Query: 118 NNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPR 153
            +N L+      F   +  L+ + L++N    S PR
Sbjct: 502 ASNQLKSVPDGIFDRLT-SLQKIWLHTNPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 3/66 (4%)

Query: 279 TTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHG 338
            T       F  +IP  L    S   L+LS N L      SF +   L+ LDLS  ++  
Sbjct: 10  ITYQCMELNFY-KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66

Query: 339 RIPEQF 344
                +
Sbjct: 67  IEDGAY 72

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  105 bits (264), Expect = 2e-25
 Identities = 55/344 (15%), Positives = 106/344 (30%), Gaps = 28/344 (8%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPP 60
           LS+N +       D +   +L  LD++NN++ ++   P  +I  L+  NN I        
Sbjct: 65  LSSNVLY---ETLDLESLSTLRTLDLNNNYVQELLVGP--SIETLHAANNNISRVSCSRG 119

Query: 61  PSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNN 120
              +    +NNK+           S ++Y+ L  N +       L   S  L  L+L  N
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 121 YLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLG 180
           ++              L++L L+SNKL            G+  +++ NN +       L 
Sbjct: 180 FIYDVKGQVVFA---KLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKL-VLIEKALR 234

Query: 181 SLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVD 240
               L+   LR N F+   C        +  R+  ++       L               
Sbjct: 235 FSQNLEHFDLRGNGFH---CGTLRDFFSKNQRVQTVAKQTVKK-LTGQNEEECTVPTLGH 290

Query: 241 EKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFK 300
                         Y  + +      R + LKR       +    ++ +  +     +  
Sbjct: 291 -----------YGAYCCEDLPAPFADRLIALKR--KEHALLSGQGSETE-RLECERENQA 336

Query: 301 SLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQF 344
               ++         I           +L+     L  ++    
Sbjct: 337 RQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGR 380

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 93.0 bits (231), Expect = 5e-21
 Identities = 55/328 (16%), Positives = 98/328 (29%), Gaps = 84/328 (25%)

Query: 20  SLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQ 76
                 ++++ L Q          N+  L+L                     S N L   
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDL---------------------SGNPLSQI 49

Query: 77  IPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCD 136
               +   + LE ++LS N L       L +  + L  L LNNNY+Q  +    +     
Sbjct: 50  SAADLAPFTKLELLNLSSNVLYE--TLDLESL-STLRTLDLNNNYVQ-ELLVGPS----- 100

Query: 137 LRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFY 196
           + +L   +N +        +   G + + + NN I        G    ++ L L+ N   
Sbjct: 101 IETLHAANNNIS-RVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157

Query: 197 GPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYY 256
             +    +    + L  ++L +N       + +F  L+                      
Sbjct: 158 T-VNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLK---------------------- 194

Query: 257 QDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSI 316
                                  T+DLSSN+    +         +  ++L +N L   I
Sbjct: 195 -----------------------TLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LI 229

Query: 317 PVSFANMIVLESLDLSSNKLHGRIPEQF 344
             +      LE  DL  N  H      F
Sbjct: 230 EKALRFSQNLEHFDLRGNGFHCGTLRDF 257

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 91.4 bits (227), Expect = 2e-20
 Identities = 57/340 (16%), Positives = 117/340 (34%), Gaps = 88/340 (25%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGTIL 57
           ++++ ++ +   S  Q   ++  LD+S N L+QI      P+  + +LNL +N +     
Sbjct: 17  VTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE--- 72

Query: 58  VPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHL 117
                                  + SLS+L  + L++N +   +          +  LH 
Sbjct: 73  --------------------TLDLESLSTLRTLDLNNNYVQ-ELLV-----GPSIETLHA 106

Query: 118 NNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGD-TFP 176
            NN +               +++ L +NK+           + ++ +++  N I    F 
Sbjct: 107 ANNNISRVSCSRGQG----KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162

Query: 177 SWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETM 236
               S   L+ L L+ N     + +V   + F  L+ +DLS N+     P       ++ 
Sbjct: 163 ELAASSDTLEHLNLQYNF----IYDVKGQVVFAKLKTLDLSSNKLAFMGP-----EFQSA 213

Query: 237 KNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVL 296
             V                                       T I L +N+    I + L
Sbjct: 214 AGV---------------------------------------TWISLRNNKLV-LIEKAL 233

Query: 297 GDFKSLIVLNLSHNGL-TGSIPVSFANMIVLESLDLSSNK 335
              ++L   +L  NG   G++   F+    ++++   + K
Sbjct: 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 83.7 bits (207), Expect = 7e-18
 Identities = 45/263 (17%), Positives = 87/263 (33%), Gaps = 61/263 (23%)

Query: 83  SLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGL 142
           + +  +   ++ ++L       L   +  +  L L+ N L        A  +  L  L L
Sbjct: 8   NGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFT-KLELLNL 65

Query: 143 NSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEV 202
           +SN L  +    L   + L  +++ NN + +     L   P ++ L   +N     +  V
Sbjct: 66  SSNVLYETLD--LESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNN----ISRV 114

Query: 203 NIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTV 262
           +     +  + I L++N+ T  L          +                          
Sbjct: 115 SCSR-GQGKKNIYLANNKITM-LRDLDEGCRSRV-------------------------- 146

Query: 263 TVKGRDLVLKRIITIFTTIDLSSNQFQG-EIPQVLGDFKSLIVLNLSHNGLTGSIPVSFA 321
                             +DL  N+       ++     +L  LNL +N +   +     
Sbjct: 147 ----------------QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVK-GQV 188

Query: 322 NMIVLESLDLSSNKLHGRIPEQF 344
               L++LDLSSNKL   +  +F
Sbjct: 189 VFAKLKTLDLSSNKLA-FMGPEF 210

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 64.9 bits (158), Expect = 1e-11
 Identities = 28/211 (13%), Positives = 64/211 (30%), Gaps = 56/211 (26%)

Query: 126 IPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGL 185
           I +   NG+   +   +  + L+ +          ++ +++  N +     + L     L
Sbjct: 2   IHEIKQNGN-RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 186 KILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSD 245
           ++L L SN     L E   +     LR +DL++N             L    ++      
Sbjct: 61  ELLNLSSNV----LYETLDLESLSTLRTLDLNNNYVQ---------ELLVGPSI------ 101

Query: 246 GLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVL 305
                                             T+  ++N     +       +    +
Sbjct: 102 ---------------------------------ETLHAANNNIS-RVS--CSRGQGKKNI 125

Query: 306 NLSHNGLTGSIPVSFANMIVLESLDLSSNKL 336
            L++N +T    +       ++ LDL  N++
Sbjct: 126 YLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 53.7 bits (129), Expect = 5e-08
 Identities = 24/228 (10%), Positives = 60/228 (26%), Gaps = 12/228 (5%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ--HPWKNITVLNLQNNTIQGTIL- 57
           LS+N++   +          +T++ + NN L  IE+     +N+   +L+ N      L 
Sbjct: 198 LSSNKLA-FMGPEFQS-AAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLR 255

Query: 58  -VPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNF----STQL 112
                + R    +   +      +    +                 P           + 
Sbjct: 256 DFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEH 315

Query: 113 TILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIG 172
            +L    +  +    +         R +     + R    +          +      + 
Sbjct: 316 ALLSGQGSETERLECERENQAR--QREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALD 373

Query: 173 DTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNE 220
           +   +   +   L   + ++              P + LR I   + E
Sbjct: 374 EQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEE 421

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 8/53 (15%), Positives = 20/53 (37%)

Query: 292 IPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQF 344
           I ++  +     +  ++ + L  ++     +   ++ LDLS N L        
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADL 54

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  104 bits (261), Expect = 3e-25
 Identities = 66/350 (18%), Positives = 125/350 (35%), Gaps = 62/350 (17%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQH---PWKNITVLNLQNN---TIQG 54
             N+ +R ++  +    ++ +  L++++  + +I+ +       I  L +  N    +  
Sbjct: 52  FKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP 110

Query: 55  TILVPPPSTRAFLFSNNKLFGQIPPSI-YSLSSLEYISLSHNNLSGTIPPCLGNFSTQLT 113
            +    P     +   N L   +P  I ++   L  +S+S+NNL   I       +T L 
Sbjct: 111 HVFQNVPLLTVLVLERNDL-SSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQ 168

Query: 114 ILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGD 173
            L L++N L         +    L    ++ N L       LA    +E ++  +N I +
Sbjct: 169 NLQLSSNRLTHVDLSLIPS----LFHANVSYNLLS-----TLAIPIAVEELDASHNSI-N 218

Query: 174 TFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSL 233
                      L IL L+ N     L +   +L +  L  +DLS+NE    +    FV +
Sbjct: 219 VVRG--PVNVELTILKLQHNN----LTDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKM 271

Query: 234 ETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIF------TTIDLSSNQ 287
           + ++         LY+                     L  +            +DLS N 
Sbjct: 272 QRLER--------LYISNNR-----------------LVALNLYGQPIPTLKVLDLSHNH 306

Query: 288 FQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLH 337
               + +    F  L  L L HN +  ++    +    L++L LS N   
Sbjct: 307 LL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  101 bits (253), Expect = 3e-24
 Identities = 53/338 (15%), Positives = 112/338 (33%), Gaps = 80/338 (23%)

Query: 19  KSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFG 75
            +   +   N+ + ++       ++ + +LNL +  I+                      
Sbjct: 45  NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE---------------------- 82

Query: 76  QIPPSIYS-LSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGS 134
           +I    ++   +++ + +  N +   +PP +      LT+L L  N L   +P    + +
Sbjct: 83  EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNT 140

Query: 135 CDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNR 194
             L +L +++N L           T L+ + + +N +       L  +P L    +  N 
Sbjct: 141 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THVD--LSLIPSLFHANVSYNL 197

Query: 195 FYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEED 254
               L  + I +   A+  +D SHN     +   + V L  +                  
Sbjct: 198 ----LSTLAIPI---AVEELDASHNSIN-VVRGPVNVELTIL------------------ 231

Query: 255 YYQDSVTVTVKGRDLVLKRIITIF--------TTIDLSSNQFQGEIPQVLGDFKSLIVLN 306
                         L    +              +DLS N+ +  +       + L  L 
Sbjct: 232 -------------KLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 278

Query: 307 LSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQF 344
           +S+N L  ++ +    +  L+ LDLS N L   +    
Sbjct: 279 ISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQ 314

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 97.4 bits (243), Expect = 8e-23
 Identities = 52/233 (22%), Positives = 96/233 (41%), Gaps = 17/233 (7%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPP 60
           +SNN +  RI     Q   SL  L +S+N LT ++     ++   N+  N +  + L  P
Sbjct: 148 MSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLL--STLAIP 204

Query: 61  PSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNN 120
            +      S+N +   +   +     L  + L HNNL  T    L N+   L  + L+ N
Sbjct: 205 IAVEELDASHNSI-NVVRGPV--NVELTILKLQHNNL--TDTAWLLNY-PGLVEVDLSYN 258

Query: 121 YLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLG 180
            L+  +   F      L  L +++N+L  +   Y      L+V+++ +N +         
Sbjct: 259 ELEKIMYHPFVKMQ-RLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHL-LHVERNQP 315

Query: 181 SLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSL 233
               L+ L L  N     +  + +      L+ + LSHN++     R +F ++
Sbjct: 316 QFDRLENLYLDHNS----IVTLKLST-HHTLKNLTLSHNDWDCNSLRALFRNV 363

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 82.4 bits (204), Expect = 1e-17
 Identities = 48/275 (17%), Positives = 103/275 (37%), Gaps = 35/275 (12%)

Query: 83  SLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGL 142
           +L++ + ++  ++ +   +P  L +   Q+ +L+LN+  ++     AFA     ++ L +
Sbjct: 43  TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAH-TIQKLYM 100

Query: 143 NSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEV 202
             N +R   P    +   L V+ +  N +         + P L  L + +N     L  +
Sbjct: 101 GFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN----LERI 156

Query: 203 --NIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSV 260
             +      +L+ + LS N  T  +   +  SL               +         ++
Sbjct: 157 EDDTFQATTSLQNLQLSSNRLTH-VDLSLIPSLFH-----------ANVSYNL---LSTL 201

Query: 261 TVTVKGRDLVLK--RIITIF-------TTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNG 311
            + +   +L      I  +        T + L  N    +    L ++  L+ ++LS+N 
Sbjct: 202 AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNE 259

Query: 312 LTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVD 346
           L   +   F  M  LE L +S+N+L   +      
Sbjct: 260 LEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQP 293

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 77.8 bits (192), Expect = 4e-16
 Identities = 41/220 (18%), Positives = 72/220 (32%), Gaps = 40/220 (18%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPP 60
           +S N +      S      ++  LD S+N +  +       +T+L LQ+N +        
Sbjct: 193 VSYNLL------STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD------ 240

Query: 61  PSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNN 120
                               + +   L  + LS+N L   I         +L  L+++NN
Sbjct: 241 -----------------TAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNN 282

Query: 121 YLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLG 180
            L   +          L+ L L+ N L     R       LE + + +N I  T    L 
Sbjct: 283 RLV-ALNLYGQPIP-TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LS 336

Query: 181 SLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNE 220
           +   LK L L  N         ++   F  +    +   +
Sbjct: 337 THHTLKNLTLSHN----DWDCNSLRALFRNVARPAVDDAD 372

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 65.5 bits (160), Expect = 6e-12
 Identities = 43/262 (16%), Positives = 82/262 (31%), Gaps = 59/262 (22%)

Query: 77  IPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCD 136
           I  ++        + +                     I+   N+ ++ ++P A  +    
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITL-NNQKIVTFKNSTMR-KLPAALLDSFRQ 70

Query: 137 LRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFY 196
           +  L LN  ++        A    ++ + +G N I    P    ++P L +LVL  N   
Sbjct: 71  VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND-- 128

Query: 197 GPLCEV--NIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEED 254
             L  +   I      L  + +S+N     +    F +  +++                 
Sbjct: 129 --LSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQ----------------- 168

Query: 255 YYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTG 314
                                     + LSSN+    +   L    SL   N+S+N L+ 
Sbjct: 169 -------------------------NLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS- 199

Query: 315 SIPVSFANMIVLESLDLSSNKL 336
               + A  I +E LD S N +
Sbjct: 200 ----TLAIPIAVEELDASHNSI 217

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 49.7 bits (119), Expect = 7e-07
 Identities = 29/205 (14%), Positives = 62/205 (30%), Gaps = 49/205 (23%)

Query: 135 CDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNR 194
           C    + ++       F          ++V   N+ +     + L S   +++L L   +
Sbjct: 21  CVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ 80

Query: 195 FYGPLCEV--NIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGE 252
               + E+          ++ + +  N    +LP  +F ++  +                
Sbjct: 81  ----IEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLL---------------- 119

Query: 253 EDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGL 312
                                     T + L  N        +  +   L  L++S+N L
Sbjct: 120 --------------------------TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL 153

Query: 313 TGSIPVSFANMIVLESLDLSSNKLH 337
                 +F     L++L LSSN+L 
Sbjct: 154 ERIEDDTFQATTSLQNLQLSSNRLT 178

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  101 bits (253), Expect = 9e-24
 Identities = 53/331 (16%), Positives = 111/331 (33%), Gaps = 79/331 (23%)

Query: 19  KSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFG 75
            +   +   N+ + ++       ++ + +LNL +  I+                      
Sbjct: 51  NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE---------------------- 88

Query: 76  QIPPSIYS-LSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGS 134
           +I    ++   +++ + +  N +   +PP +      LT+L L  N L   +P    + +
Sbjct: 89  EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNT 146

Query: 135 CDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNR 194
             L +L +++N L           T L+ + + +N +       L  +P L    +  N 
Sbjct: 147 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THVD--LSLIPSLFHANVSYNL 203

Query: 195 FYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEED 254
               L  + I +   A+  +D SHN     +   + V L  +                  
Sbjct: 204 ----LSTLAIPI---AVEELDASHNSIN-VVRGPVNVELTIL------------------ 237

Query: 255 YYQDSVTVTVKGRDLVLKRIITIF--------TTIDLSSNQFQGEIPQVLGDFKSLIVLN 306
                         L    +              +DLS N+ +  +       + L  L 
Sbjct: 238 -------------KLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 284

Query: 307 LSHNGLTGSIPVSFANMIVLESLDLSSNKLH 337
           +S+N L  ++ +    +  L+ LDLS N L 
Sbjct: 285 ISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL 314

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 98.5 bits (245), Expect = 1e-22
 Identities = 63/341 (18%), Positives = 120/341 (35%), Gaps = 28/341 (8%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPP 60
           +SNN +  RI     Q   SL  L +S+N LT ++     ++   N+  N +  + L  P
Sbjct: 154 MSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLL--STLAIP 210

Query: 61  PSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNN 120
            +      S+N +   +   +     L  + L HNNL  T    L N+   L  + L+ N
Sbjct: 211 IAVEELDASHNSI-NVVRGPV--NVELTILKLQHNNL--TDTAWLLNY-PGLVEVDLSYN 264

Query: 121 YLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLG 180
            L+  +   F      L  L +++N+L  +   Y      L+V+++ +N +         
Sbjct: 265 ELEKIMYHPFVKMQ-RLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHL-LHVERNQP 321

Query: 181 SLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVD 240
               L+ L L  N     +  + +      L+ + LSHN++     R +F ++      D
Sbjct: 322 QFDRLENLYLDHNS----IVTLKLST-HHTLKNLTLSHNDWDCNSLRALFRNVARPAVDD 376

Query: 241 EKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFK 300
                 +  Q E              R L             ++      ++ +  G   
Sbjct: 377 ADQHCKIDYQLEHGLCCKESDKPYLDRLLQ-----------YIALTSVVEKVQRAQGRCS 425

Query: 301 SLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIP 341
           +   +N   +            +   E L+   N+L   + 
Sbjct: 426 ATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQ 466

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 85.4 bits (211), Expect = 3e-18
 Identities = 52/312 (16%), Positives = 108/312 (34%), Gaps = 47/312 (15%)

Query: 40  KNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSIYS-LSSLEYISLSHNNLS 98
            ++ +     +   G   +   + +   F N+ +  ++P ++      +E ++L+   + 
Sbjct: 30  YDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM-RKLPAALLDSFRQVELLNLNDLQIE 88

Query: 99  GTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADC 158
             I      ++  +  L++  N ++   P  F N    L  L L  N L         + 
Sbjct: 89  -EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP-LLTVLVLERNDLSSLPRGIFHNT 146

Query: 159 TGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSH 218
             L  +++ NN +         +   L+ L L SNR    L  V++ L   +L   ++S+
Sbjct: 147 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR----LTHVDLSL-IPSLFHANVSY 201

Query: 219 NEFTGFLP----RWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRI 274
           N  +          +  S  ++  V    +  L                           
Sbjct: 202 NLLSTLAIPIAVEELDASHNSINVVRGPVNVEL--------------------------- 234

Query: 275 ITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSN 334
               T + L  N    +    L ++  L+ ++LS+N L   +   F  M  LE L +S+N
Sbjct: 235 ----TILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 288

Query: 335 KLHGRIPEQFVD 346
           +L   +      
Sbjct: 289 RLV-ALNLYGQP 299

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 49.5 bits (118), Expect = 1e-06
 Identities = 29/204 (14%), Positives = 62/204 (30%), Gaps = 49/204 (24%)

Query: 135 CDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNR 194
           C    + ++       F          ++V   N+ +     + L S   +++L L   +
Sbjct: 27  CVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ 86

Query: 195 FYGPLCEV--NIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGE 252
               + E+          ++ + +  N    +LP  +F ++  +                
Sbjct: 87  ----IEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLL---------------- 125

Query: 253 EDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGL 312
                                     T + L  N        +  +   L  L++S+N L
Sbjct: 126 --------------------------TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL 159

Query: 313 TGSIPVSFANMIVLESLDLSSNKL 336
                 +F     L++L LSSN+L
Sbjct: 160 ERIEDDTFQATTSLQNLQLSSNRL 183

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 95.4 bits (238), Expect = 1e-22
 Identities = 49/332 (14%), Positives = 93/332 (28%), Gaps = 90/332 (27%)

Query: 19  KSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNN---TIQGTILVPPPSTRAFLFSNNK 72
                  ++++ L Q          N+  L+L  N    I    L P         S+N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 73  LFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFAN 132
           L       + SLS+L  + L++N +   +          +  LH  NN +          
Sbjct: 70  L--YETLDLESLSTLRTLDLNNNYVQ-ELLVG-----PSIETLHAANNNISRVSCSRGQG 121

Query: 133 GSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRS 192
                +++ L +NK+           + ++ +++  N                +I  +  
Sbjct: 122 ----KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN----------------EIDTVNF 161

Query: 193 NRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGE 252
                           + L  ++L +N       + +F  L+T                 
Sbjct: 162 AELAASS---------DTLEHLNLQYNFIYDVKGQVVFAKLKT----------------- 195

Query: 253 EDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGL 312
                                       +DLSSN+    +         +  ++L +N L
Sbjct: 196 ----------------------------LDLSSNKLA-FMGPEFQSAAGVTWISLRNNKL 226

Query: 313 TGSIPVSFANMIVLESLDLSSNKLHGRIPEQF 344
              I  +      LE  DL  N  H      F
Sbjct: 227 V-LIEKALRFSQNLEHFDLRGNGFHCGTLRDF 257

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 93.5 bits (233), Expect = 9e-22
 Identities = 57/340 (16%), Positives = 117/340 (34%), Gaps = 88/340 (25%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGTIL 57
           ++++ ++ +   S  Q   ++  LD+S N L+QI      P+  + +LNL +N +     
Sbjct: 17  VTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE--- 72

Query: 58  VPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHL 117
                                  + SLS+L  + L++N +   +          +  LH 
Sbjct: 73  --------------------TLDLESLSTLRTLDLNNNYVQ-ELLVG-----PSIETLHA 106

Query: 118 NNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGD-TFP 176
            NN +               +++ L +NK+           + ++ +++  N I    F 
Sbjct: 107 ANNNISRVSCSRGQG----KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162

Query: 177 SWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETM 236
               S   L+ L L+ N     + +V   + F  L+ +DLS N+     P       ++ 
Sbjct: 163 ELAASSDTLEHLNLQYNF----IYDVKGQVVFAKLKTLDLSSNKLAFMGP-----EFQSA 213

Query: 237 KNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVL 296
             V                                       T I L +N+    I + L
Sbjct: 214 AGV---------------------------------------TWISLRNNKLV-LIEKAL 233

Query: 297 GDFKSLIVLNLSHNGLT-GSIPVSFANMIVLESLDLSSNK 335
              ++L   +L  NG   G++   F+    ++++   + K
Sbjct: 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 85.8 bits (213), Expect = 4e-19
 Identities = 46/269 (17%), Positives = 88/269 (32%), Gaps = 61/269 (22%)

Query: 77  IPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCD 136
           I     + +  +   ++ ++L       L   +  +  L L+ N L        A  +  
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFT-K 59

Query: 137 LRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFY 196
           L  L L+SN L  +    L   + L  +++ NN + +     L   P ++ L   +N   
Sbjct: 60  LELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNN-- 110

Query: 197 GPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYY 256
             +  V+     +  + I L++N+ T  L          +                    
Sbjct: 111 --ISRVSCSR-GQGKKNIYLANNKITM-LRDLDEGCRSRV-------------------- 146

Query: 257 QDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQG-EIPQVLGDFKSLIVLNLSHNGLTGS 315
                                   +DL  N+       ++     +L  LNL +N +   
Sbjct: 147 ----------------------QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-D 183

Query: 316 IPVSFANMIVLESLDLSSNKLHGRIPEQF 344
           +         L++LDLSSNKL   +  +F
Sbjct: 184 VK-GQVVFAKLKTLDLSSNKLA-FMGPEF 210

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 84.3 bits (209), Expect = 1e-18
 Identities = 37/241 (15%), Positives = 84/241 (34%), Gaps = 32/241 (13%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPWKNITVLNLQNN---TIQGTIL 57
           L+NN ++  +         S+  L  +NN ++++     +    + L NN    ++    
Sbjct: 87  LNNNYVQ-ELLVG-----PSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDE 140

Query: 58  VPPPSTRAFLFSNNKLFG-QIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILH 116
                 +      N++          S  +LE+++L +N +   +   +     +L  L 
Sbjct: 141 GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV--VFAKLKTLD 197

Query: 117 LNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMI-GDTF 175
           L++N L   +   F + +  +  + L +NKL     + L     LE  ++  N     T 
Sbjct: 198 LSSNKLA-FMGPEFQSAA-GVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTL 254

Query: 176 PSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEA---------------LRIIDLSHNE 220
             +      ++ +  ++ +      E    +P                   R+I L H+ 
Sbjct: 255 RDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHH 314

Query: 221 F 221
            
Sbjct: 315 H 315

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 95.0 bits (236), Expect = 1e-21
 Identities = 60/323 (18%), Positives = 107/323 (33%), Gaps = 71/323 (21%)

Query: 19  KSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIP 78
                L++  + LT +      +IT L + +N +  ++   PP  R    S N+L   +P
Sbjct: 40  NGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLT-SLPALPPELRTLEVSGNQL-TSLP 97

Query: 79  PSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLR 138
                L  L   S    +L            + L  L +  N L   +P         L+
Sbjct: 98  VLPPGLLELSIFSNPLTHLPALP--------SGLCKLWIFGNQLT-SLPVLPPG----LQ 144

Query: 139 SLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGP 198
            L ++ N+L  S P   ++   L      NN +  + P       GL+ L +  N+    
Sbjct: 145 ELSVSDNQLA-SLPALPSELCKL---WAYNNQL-TSLPM---LPSGLQELSVSDNQL--- 193

Query: 199 LCEVNIMLP--FEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYY 256
                  LP     L  +   +N  T  LP      L+            L +       
Sbjct: 194 -----ASLPTLPSELYKLWAYNNRLT-SLPALP-SGLKE-----------LIVS------ 229

Query: 257 QDSVTVTVKGRDLVLKRI---ITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLT 313
                         L  +    +    + +S N+    +P +      L+ L++  N LT
Sbjct: 230 -----------GNRLTSLPVLPSELKELMVSGNRLT-SLPMLPS---GLLSLSVYRNQLT 274

Query: 314 GSIPVSFANMIVLESLDLSSNKL 336
             +P S  ++    +++L  N L
Sbjct: 275 -RLPESLIHLSSETTVNLEGNPL 296

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 87.6 bits (217), Expect = 4e-19
 Identities = 61/340 (17%), Positives = 107/340 (31%), Gaps = 94/340 (27%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPW--KNITVLNLQNNTIQGTILV 58
           + +N +   +     +    L  L++S N LT +   P     +++ +     +      
Sbjct: 68  IPDNNLT-SLPALPPE----LRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPAL--- 119

Query: 59  PPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLN 118
            P          N+L   +P     L  L   S+S N L+ ++P         L  L   
Sbjct: 120 -PSGLCKLWIFGNQL-TSLPVLPPGLQEL---SVSDNQLA-SLPALPSE----LCKLWAY 169

Query: 119 NNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSW 178
           NN L   +P   +     L+ L ++ N+L  S P   ++   L      NN +  + P+ 
Sbjct: 170 NNQLT-SLPMLPSG----LQELSVSDNQLA-SLPTLPSELYKLWA---YNNRL-TSLPAL 219

Query: 179 LGSLPGLKILVLRSNRFYGPLCEVNIMLPFE--ALRIIDLSHNEFTGFLPRWIFVSLETM 236
              L   K L++  NR           LP     L+ + +S N  T  LP          
Sbjct: 220 PSGL---KELIVSGNRL--------TSLPVLPSELKELMVSGNRLTS-LPMLP------- 260

Query: 237 KNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVL 296
                    GL                                ++ +  NQ    +P+ L
Sbjct: 261 --------SGL-------------------------------LSLSVYRNQLT-RLPESL 280

Query: 297 GDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKL 336
               S   +NL  N L+     +   +  + S    S  +
Sbjct: 281 IHLSSETTVNLEGNPLS---ERTLQALREITSAPGYSGPI 317

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 79.9 bits (197), Expect = 1e-16
 Identities = 49/264 (18%), Positives = 88/264 (33%), Gaps = 69/264 (26%)

Query: 84  LSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLN 143
            +    +++  + L+ T+P CL      +T L + +N L   +P         LR+L ++
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLT-SLPALPPE----LRTLEVS 89

Query: 144 SNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVN 203
            N+L  S P        L + +     +            GL  L +  N+         
Sbjct: 90  GNQLT-SLPVLPPGLLELSIFSNPLTHLPA-------LPSGLCKLWIFGNQL-------- 133

Query: 204 IMLP--FEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVT 261
             LP     L+ + +S N+    LP      L             L+             
Sbjct: 134 TSLPVLPPGLQELSVSDNQLAS-LPALPS-ELCK-----------LWA------------ 168

Query: 262 VTVKGRDLVLKRI---ITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPV 318
                 +  L  +    +    + +S NQ    +P +      L  L   +N LT S+P 
Sbjct: 169 -----YNNQLTSLPMLPSGLQELSVSDNQLA-SLPTLPS---ELYKLWAYNNRLT-SLPA 218

Query: 319 SFANMIVLESLDLSSNKLHGRIPE 342
             +    L+ L +S N+L   +P 
Sbjct: 219 LPSG---LKELIVSGNRL-TSLPV 238

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 50.7 bits (121), Expect = 4e-07
 Identities = 39/203 (19%), Positives = 69/203 (33%), Gaps = 50/203 (24%)

Query: 138 RSLGLNSNKLRGSFPRYLADC--TGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRF 195
           R+     ++ R +  + +  C   G  V+NVG + +  T P  L +   +  LV+  N  
Sbjct: 17  RAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNL 73

Query: 196 YGPLCEVNIMLP--FEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEE 253
                     LP     LR +++S N+ T  LP    V    +  +              
Sbjct: 74  --------TSLPALPPELRTLEVSGNQLT-SLP----VLPPGLLELSI-----FSNPLTH 115

Query: 254 DYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLT 313
                            L  + +    + +  NQ    +P +      L  L++S N L 
Sbjct: 116 -----------------LPALPSGLCKLWIFGNQLT-SLPVLPP---GLQELSVSDNQLA 154

Query: 314 GSIPVSFANMIVLESLDLSSNKL 336
            S+P   +    L  L   +N+L
Sbjct: 155 -SLPALPSE---LCKLWAYNNQL 173

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 47.6 bits (113), Expect = 4e-06
 Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 12/84 (14%)

Query: 265 KGRDLVLKRIITIF----TTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSF 320
           +GR  V++++          +++  +     +P  L     +  L +  N LT S+P   
Sbjct: 25  RGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPALP 80

Query: 321 ANMIVLESLDLSSNKLHGRIPEQF 344
                L +L++S N+L   +P   
Sbjct: 81  PE---LRTLEVSGNQLT-SLPVLP 100

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 18/137 (13%), Positives = 37/137 (27%), Gaps = 41/137 (29%)

Query: 211 LRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLV 270
             ++++  +  T  LP  +   + T           L +                     
Sbjct: 42  NAVLNVGESGLT-TLPDCLPAHITT-----------LVIPDNN----------------- 72

Query: 271 LKRI---ITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLE 327
           L  +        T+++S NQ    +P +      L + +     L             L 
Sbjct: 73  LTSLPALPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPS-------GLC 124

Query: 328 SLDLSSNKLHGRIPEQF 344
            L +  N+L   +P   
Sbjct: 125 KLWIFGNQLT-SLPVLP 140

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 92.4 bits (230), Expect = 2e-21
 Identities = 50/228 (21%), Positives = 87/228 (38%), Gaps = 16/228 (7%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPWKNITVLNLQNN---TIQGTIL 57
           L NN+I  +IS         L  L +S N L ++ +   K +  L +  N    ++ ++ 
Sbjct: 83  LINNKIS-KISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVF 141

Query: 58  VPPPSTRAFLFSNNKL-FGQIPPSI-YSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTIL 115
                        N L    I       +  L YI ++  N++ TIP   G   + LT L
Sbjct: 142 NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPS-LTEL 197

Query: 116 HLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTF 175
           HL+ N +  ++  A   G  +L  LGL+ N +       LA+   L  +++ NN +    
Sbjct: 198 HLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL-VKV 255

Query: 176 PSWLGSLPGLKILVLRSNRF----YGPLCEVNIMLPFEALRIIDLSHN 219
           P  L     ++++ L +N          C         +   + L  N
Sbjct: 256 PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN 303

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 89.7 bits (223), Expect = 2e-20
 Identities = 50/319 (15%), Positives = 98/319 (30%), Gaps = 77/319 (24%)

Query: 20  SLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPP 79
            L  +  S+  L ++ +    +  +L+LQNN I           +   F N         
Sbjct: 32  HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKIT--------EIKDGDFKN--------- 74

Query: 80  SIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRS 139
               L +L  + L +N +S  I P       +L  L+L+ N L+             L+ 
Sbjct: 75  ----LKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLKELPEKMPKT----LQE 125

Query: 140 LGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTF--PSWLGSLPGLKILVLRSNRFYG 197
           L ++ N++             + VV +G N +  +         +  L  + +       
Sbjct: 126 LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN--- 182

Query: 198 PLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQ 257
            +  +   L   +L  + L  N+ T  +       L  +                     
Sbjct: 183 -ITTIPQGL-PPSLTELHLDGNKIT-KVDAASLKGLNNLA-------------------- 219

Query: 258 DSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIP 317
                                  + LS N         L +   L  L+L++N L   +P
Sbjct: 220 ----------------------KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVP 256

Query: 318 VSFANMIVLESLDLSSNKL 336
              A+   ++ + L +N +
Sbjct: 257 GGLADHKYIQVVYLHNNNI 275

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 85.4 bits (212), Expect = 6e-19
 Identities = 59/336 (17%), Positives = 101/336 (30%), Gaps = 100/336 (29%)

Query: 19  KSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFG 75
                LD+ NN +T+I+       KN+  L L NN I     + P    AF         
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK---ISP---GAF--------- 96

Query: 76  QIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSC 135
                   L  LE + LS N L   +P         L  L ++ N +       F   + 
Sbjct: 97  ------APLVKLERLYLSKNQLK-ELPE---KMPKTLQELRVHENEITKVRKSVFNGLN- 145

Query: 136 DLRSLGLNSNKLRGSF--PRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSN 193
            +  + L +N L+ S            L  + + +  I  T P   G  P L  L L  N
Sbjct: 146 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-TTIPQ--GLPPSLTELHLDGN 202

Query: 194 RFYGPLCEVNIMLPFEA------LRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGL 247
           +           +   +      L  + LS N  +  +      +   +           
Sbjct: 203 KIT--------KVDAASLKGLNNLAKLGLSFNSISA-VDNGSLANTPHL----------- 242

Query: 248 YMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNL 307
                                            + L++N+   ++P  L D K + V+ L
Sbjct: 243 -------------------------------RELHLNNNKLV-KVPGGLADHKYIQVVYL 270

Query: 308 SHNGLTGSIPVS-------FANMIVLESLDLSSNKL 336
            +N ++ +I  +                + L SN +
Sbjct: 271 HNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPV 305

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 83.9 bits (208), Expect = 2e-18
 Identities = 59/324 (18%), Positives = 110/324 (33%), Gaps = 67/324 (20%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGTIL 57
           L NN+I   I   D +  K+L  L + NN +++I      P   +  L L  N ++    
Sbjct: 59  LQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK---E 114

Query: 58  VP---PPSTRAFLFSNNKLFGQIPPSIYS-LSSLEYISLSHNNL-SGTIPPCLGNFS--T 110
           +P   P + +      N++  ++  S+++ L+ +  + L  N L S  I    G F    
Sbjct: 115 LPEKMPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIEN--GAFQGMK 171

Query: 111 QLTILHLNNNYLQGRIPD-AFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNN 169
           +L+ + + +  +   IP     +    L  L L+ NK+       L     L  + +  N
Sbjct: 172 KLSYIRIADTNIT-TIPQGLPPS----LTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 226

Query: 170 MIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLP-FEALRIIDLSHNEFTGFLPRW 228
            I       L + P L+ L L +N+    L +V   L   + ++++ L +N  +  +   
Sbjct: 227 SISAVDNGSLANTPHLRELHLNNNK----LVKVPGGLADHKYIQVVYLHNNNIS-AIGSN 281

Query: 229 IFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQF 288
            F                                                + + L SN  
Sbjct: 282 DFCPPGYNTK--------------------------------KASY----SGVSLFSNPV 305

Query: 289 Q-GEIPQ-VLGDFKSLIVLNLSHN 310
           Q  EI             + L + 
Sbjct: 306 QYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 79.3 bits (196), Expect = 9e-17
 Identities = 41/211 (19%), Positives = 82/211 (38%), Gaps = 25/211 (11%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPW-----KNITVLNLQNNTIQGT 55
           +  N I  ++ KS       +  +++  N L             K ++ + + +  I   
Sbjct: 128 VHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT- 185

Query: 56  ILVP---PPSTRAFLFSNNKLFGQIPP-SIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQ 111
             +P   PPS        NK+  ++   S+  L++L  + LS N++S  +       +  
Sbjct: 186 --IPQGLPPSLTELHLDGNKI-TKVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPH 241

Query: 112 LTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLR----GSF--PRYLADCTGLEVVN 165
           L  LHLNNN L  ++P   A+    ++ + L++N +       F  P Y         V+
Sbjct: 242 LRELHLNNNKLV-KVPGGLADHKY-IQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVS 299

Query: 166 VGNNMIGDTF--PSWLGSLPGLKILVLRSNR 194
           + +N +      PS    +     + L + +
Sbjct: 300 LFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 61.2 bits (149), Expect = 1e-10
 Identities = 44/259 (16%), Positives = 73/259 (28%), Gaps = 68/259 (26%)

Query: 86  SLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSN 145
            L  +  S   L   +P    +      +L L NN +       F N   +L +L L +N
Sbjct: 32  HLRVVQCSDLGLE-KVPK---DLPPDTALLDLQNNKITEIKDGDFKNLK-NLHTLILINN 86

Query: 146 KLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIM 205
           K+    P   A    LE + +  N +    P        L+ L +  N            
Sbjct: 87  KISKISPGAFAPLVKLERLYLSKNQL-KELPE--KMPKTLQELRVHENEIT--------K 135

Query: 206 LPFEA------LRIIDLSHNEFT-GFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQD 258
           +          + +++L  N      +    F  ++ +                      
Sbjct: 136 VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS--------------------- 174

Query: 259 SVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPV 318
                                 I ++       IPQ L    SL  L+L  N +T     
Sbjct: 175 ---------------------YIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAA 210

Query: 319 SFANMIVLESLDLSSNKLH 337
           S   +  L  L LS N + 
Sbjct: 211 SLKGLNNLAKLGLSFNSIS 229

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 35/211 (16%), Positives = 63/211 (29%), Gaps = 54/211 (25%)

Query: 134 SCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSN 193
            C LR +  +   L    P+ L       ++++ NN I +       +L  L  L+L +N
Sbjct: 30  QCHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN 86

Query: 194 RFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEE 253
           +            P   L  + LS N+    LP  +  +L+                   
Sbjct: 87  KI--SKISPGAFAPLVKLERLYLSKNQLKE-LPEKMPKTLQE------------------ 125

Query: 254 DYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLT 313
                                      + +  N+       V      +IV+ L  N L 
Sbjct: 126 ---------------------------LRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 158

Query: 314 GSI--PVSFANMIVLESLDLSSNKLHGRIPE 342
            S     +F  M  L  + ++   +   IP+
Sbjct: 159 SSGIENGAFQGMKKLSYIRIADTNIT-TIPQ 188

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 91.6 bits (228), Expect = 4e-21
 Identities = 52/230 (22%), Positives = 86/230 (37%), Gaps = 15/230 (6%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPWKNITVLNLQNN---TIQGTIL 57
           L NN+I  +I +      + L  L IS N L +I  +   ++  L + +N    +   + 
Sbjct: 85  LVNNKIS-KIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVF 143

Query: 58  VPPPSTRAFLFSNNKL-FGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILH 116
               +        N L      P  +    L Y+ +S   L+  IP       T L  LH
Sbjct: 144 SGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPK--DLPET-LNELH 199

Query: 117 LNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFP 176
           L++N +Q  I          L  LGL  N++R      L+    L  +++ NN +    P
Sbjct: 200 LDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL-SRVP 257

Query: 177 SWLGSLPGLKILVLRSNRF----YGPLCEVNIMLPFEALRIIDLSHNEFT 222
           + L  L  L+++ L +N          C V   +       I L +N   
Sbjct: 258 AGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 82.8 bits (205), Expect = 6e-18
 Identities = 54/321 (16%), Positives = 106/321 (33%), Gaps = 82/321 (25%)

Query: 20  SLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPP 79
            L  +  S+  L  + +    + T+L+LQNN I     +         F           
Sbjct: 34  HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISE---LRKDD-----FKG--------- 76

Query: 80  SIYSLSSLEYISLSHNNLSGTIPPCLGNFS--TQLTILHLNNNYLQGRIPDAFANGSCDL 137
               L  L  + L +N +S  I      FS   +L  L+++ N+L    P+  ++    L
Sbjct: 77  ----LQHLYALVLVNNKIS-KIHE--KAFSPLRKLQKLYISKNHLVEIPPNLPSS----L 125

Query: 138 RSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTF--PSWLGSLPGLKILVLRSNRF 195
             L ++ N++R       +    +  + +G N + ++   P     L  L  L +   + 
Sbjct: 126 VELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK- 183

Query: 196 YGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDY 255
              L  +   L  E L  + L HN+    +     +    +                   
Sbjct: 184 ---LTGIPKDL-PETLNELHLDHNKIQ-AIELEDLLRYSKL------------------- 219

Query: 256 YQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGS 315
                                    + L  NQ +      L    +L  L+L +N L+  
Sbjct: 220 -----------------------YRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-R 255

Query: 316 IPVSFANMIVLESLDLSSNKL 336
           +P    ++ +L+ + L +N +
Sbjct: 256 VPAGLPDLKLLQVVYLHTNNI 276

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 80.1 bits (198), Expect = 5e-17
 Identities = 59/338 (17%), Positives = 110/338 (32%), Gaps = 81/338 (23%)

Query: 19  KSLTYLDISNNFLTQIEQHPWKNIT---VLNLQNN---TIQGTILVPPPSTRAFLFSNNK 72
              T LD+ NN ++++ +  +K +     L L NN    I      P    +    S N 
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 73  LFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFS--TQLTILHLNNNYLQGRI--PD 128
           L  +IPP++   SSL  + +  N +   +P   G FS    +  + +  N L+     P 
Sbjct: 114 L-VEIPPNL--PSSLVELRIHDNRIR-KVPK--GVFSGLRNMNCIEMGGNPLENSGFEPG 167

Query: 129 AFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKIL 188
           AF      L  L ++  KL    P+ L     L  +++ +N I       L     L  L
Sbjct: 168 AFDG--LKLNYLRISEAKLT-GIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRL 222

Query: 189 VLRSNRFYGPLCEV--NIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDG 246
            L  N+    +  +    +     LR + L +N+ +  +P      L  +K +       
Sbjct: 223 GLGHNQ----IRMIENGSLSFLPTLRELHLDNNKLS-RVPAG----LPDLKLL------- 266

Query: 247 LYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIP-------QVLGDF 299
                                             + L +N    ++              
Sbjct: 267 --------------------------------QVVYLHTNNIT-KVGVNDFCPVGFGVKR 293

Query: 300 KSLIVLNLSHNGLTGSI--PVSFANMIVLESLDLSSNK 335
                ++L +N +      P +F  +    ++   + K
Sbjct: 294 AYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 80.1 bits (198), Expect = 5e-17
 Identities = 57/247 (23%), Positives = 99/247 (40%), Gaps = 24/247 (9%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQH---PWKNITVLNLQNNTIQGTIL 57
           L NN I   + K D +  + L  L + NN +++I +    P + +  L +  N +    +
Sbjct: 61  LQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL--VEI 117

Query: 58  VP--PPSTRAFLFSNNKLFGQIPPSI-YSLSSLEYISLSHNNL-SGTIPPCLGNFST-QL 112
            P  P S       +N++  ++P  +   L ++  I +  N L +    P  G F   +L
Sbjct: 118 PPNLPSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEP--GAFDGLKL 174

Query: 113 TILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIG 172
             L ++   L G   D        L  L L+ NK++      L   + L  + +G+N I 
Sbjct: 175 NYLRISEAKLTGIPKDLPET----LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR 230

Query: 173 DTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLP-FEALRIIDLSHNEFTGFLPRWIFV 231
                 L  LP L+ L L +N+    L  V   LP  + L+++ L  N  T  +    F 
Sbjct: 231 MIENGSLSFLPTLRELHLDNNK----LSRVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFC 285

Query: 232 SLETMKN 238
            +     
Sbjct: 286 PVGFGVK 292

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 75.8 bits (187), Expect = 1e-15
 Identities = 38/204 (18%), Positives = 69/204 (33%), Gaps = 36/204 (17%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPP 60
           +  N +     +  +     L YL IS   LT I +   + +  L+L +N IQ       
Sbjct: 154 MGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQ------- 206

Query: 61  PSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFS--TQLTILHLN 118
            +                      S L  + L HN +   I    G+ S    L  LHL+
Sbjct: 207 -AIELEDLLR-------------YSKLYRLGLGHNQIR-MIEN--GSLSFLPTLRELHLD 249

Query: 119 NNYLQGRIPDAFANGSCDLRSLGLNSNKLR----GSFP--RYLADCTGLEVVNVGNNMIG 172
           NN L  R+P    +    L+ + L++N +       F    +         +++ NN + 
Sbjct: 250 NNKLS-RVPAGLPDLK-LLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307

Query: 173 DTF--PSWLGSLPGLKILVLRSNR 194
                P+    +     +   + +
Sbjct: 308 YWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 62.3 bits (152), Expect = 4e-11
 Identities = 52/258 (20%), Positives = 86/258 (33%), Gaps = 33/258 (12%)

Query: 102 PPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGL 161
             C       L ++  ++  L+  +P      S D   L L +N +             L
Sbjct: 25  AMCPFGCHCHLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHL 80

Query: 162 EVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEF 221
             + + NN I          L  L+ L +  N     L E+   L   +L  + +  N  
Sbjct: 81  YALVLVNNKISKIHEKAFSPLRKLQKLYISKNH----LVEIPPNL-PSSLVELRIHDNRI 135

Query: 222 TGFLPRWIFVSLETMKNVDEKGSDGLYMQG---EEDYYQDSVTVTVKGRDLVLK--RIIT 276
              +P+ +F  L  M          + M G   E   ++      +K   L +   ++  
Sbjct: 136 R-KVPKGVFSGLRNMNC--------IEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG 186

Query: 277 I-------FTTIDLSSNQFQGEIPQ-VLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLES 328
           I          + L  N+ Q  I    L  +  L  L L HN +      S + +  L  
Sbjct: 187 IPKDLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRE 245

Query: 329 LDLSSNKLHGRIPEQFVD 346
           L L +NKL  R+P    D
Sbjct: 246 LHLDNNKLS-RVPAGLPD 262

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 90.5 bits (225), Expect = 7e-21
 Identities = 59/323 (18%), Positives = 99/323 (30%), Gaps = 74/323 (22%)

Query: 20  SLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPP 79
           S T +  ++  LT +      + T L L++N +Q                       +P 
Sbjct: 8   SGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQ----------------------SLPH 45

Query: 80  SIYS-LSSLEYISLSHNNLSGTIPPCLGNFS--TQLTILHLNNNYLQGRIPDAFANGSCD 136
            ++  L+ L  +SLS N LS     C  +    T L  L L+ N +   +   F  G   
Sbjct: 46  GVFDKLTQLTKLSLSSNGLS-FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFL-GLEQ 102

Query: 137 LRSLGLNSNKLRGSFPR-YLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRF 195
           L  L    + L+             L  +++ +      F      L  L++L +  N F
Sbjct: 103 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 162

Query: 196 YGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDY 255
                  +I      L  +DLS  +    L    F SL +++                  
Sbjct: 163 QENFLP-DIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQ------------------ 202

Query: 256 YQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGS 315
                                    +++S N F            SL VL+ S N +  S
Sbjct: 203 ------------------------VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 238

Query: 316 IPVSFANMIV-LESLDLSSNKLH 337
                 +    L  L+L+ N   
Sbjct: 239 KKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 78.5 bits (194), Expect = 1e-16
 Identities = 43/207 (20%), Positives = 76/207 (36%), Gaps = 17/207 (8%)

Query: 1   LSNNRIRGR-ISKSDSQRWKSLTYLDISNNFLTQIEQ--HPWKNITVLNLQNNTIQGTIL 57
           LS+N +  +           SL YLD+S N +  +       + +  L+ Q++ ++    
Sbjct: 59  LSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ--- 115

Query: 58  VPPPSTRAFL-------FSNNKLFGQIPPSIYS-LSSLEYISLSHNNLSGTIPPCLGNFS 109
           +   S    L        S+          I++ LSSLE + ++ N+      P +    
Sbjct: 116 MSEFSVFLSLRNLIYLDISHTHT-RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 174

Query: 110 TQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNN 169
             LT L L+   L+ ++     N    L+ L ++ N               L+V++   N
Sbjct: 175 RNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233

Query: 170 MIGDTFPSWLGSLPG-LKILVLRSNRF 195
            I  +    L   P  L  L L  N F
Sbjct: 234 HIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 66.6 bits (163), Expect = 1e-12
 Identities = 33/159 (20%), Positives = 59/159 (37%), Gaps = 16/159 (10%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPWK---NITVLNLQNNTIQGTIL 57
             ++ ++     S     ++L YLDIS+          +    ++ VL +  N+ Q    
Sbjct: 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF- 166

Query: 58  VPPPSTRAFLF-------SNNKLFGQIPPSI-YSLSSLEYISLSHNNLSGTIPPCLGNFS 109
              P     L        S  +L  Q+ P+   SLSSL+ +++SHNN   ++        
Sbjct: 167 --LPDIFTELRNLTFLDLSQCQL-EQLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCL 222

Query: 110 TQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLR 148
             L +L  + N++         +    L  L L  N   
Sbjct: 223 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 52.3 bits (126), Expect = 8e-08
 Identities = 43/218 (19%), Positives = 73/218 (33%), Gaps = 40/218 (18%)

Query: 134 SCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSN 193
           SC    +  NS  L  S P  +   +    + + +N +          L  L  L L SN
Sbjct: 6   SCSGTEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN 62

Query: 194 RFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEE 253
                 C         +L+ +DLS N     +    F+ LE +++        L  Q   
Sbjct: 63  GLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSS-NFLGLEQLEH--------LDFQHSN 112

Query: 254 DYYQDSVTVTVKGRDLVLKRII--TIF------TTIDLSSNQFQGEIPQVLGDFKSLIVL 305
                            LK++   ++F        +D+S    +     +     SL VL
Sbjct: 113 -----------------LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 155

Query: 306 NLSHNGLTGSI-PVSFANMIVLESLDLSSNKLHGRIPE 342
            ++ N    +  P  F  +  L  LDLS  +L  ++  
Sbjct: 156 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSP 192

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 4/67 (5%)

Query: 279 TTIDLSSNQ--FQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKL 336
           T + LSSN   F+G   Q      SL  L+LS NG+  ++  +F  +  LE LD   + L
Sbjct: 55  TKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNL 113

Query: 337 HGRIPEQ 343
             ++ E 
Sbjct: 114 K-QMSEF 119

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 279 TTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLT--GSIPVSFANMIVLESLDLSSNKL 336
           T ++L SN+ Q     V      L  L+LS NGL+  G    S      L+ LDLS N +
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 90

Query: 337 HGRIPEQF 344
              +   F
Sbjct: 91  I-TMSSNF 97

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 92.0 bits (229), Expect = 9e-21
 Identities = 65/342 (19%), Positives = 125/342 (36%), Gaps = 55/342 (16%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIE-QHPWKNITVLNLQNNTIQGTILVP 59
           L NN+I       +     +L  L++S+N ++ I       ++  L+  N       L  
Sbjct: 119 LFNNQITDIDPLKN---LTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLAN 175

Query: 60  PPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNN 119
             +      S+NK+       +  L++LE +  ++N +S   P  LG   T L  L LN 
Sbjct: 176 LTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITP--LGIL-TNLDELSLNG 230

Query: 120 NYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWL 179
           N L+       A+ + +L  L L +N++    P  L+  T L  + +G N I +  P  L
Sbjct: 231 NQLKD--IGTLASLT-NLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--L 283

Query: 180 GSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNV 239
             L  L  L L  N+    L +++ +   + L  + L  N  +   P      + ++  +
Sbjct: 284 AGLTALTNLELNENQ----LEDISPISNLKNLTYLTLYFNNISDISP------VSSLTKL 333

Query: 240 DEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITI-----FTTIDLSSNQFQGEIPQ 294
                  L+    +                 +  + ++        +    NQ     P 
Sbjct: 334 QR-----LFFYNNK-----------------VSDVSSLANLTNINWLSAGHNQISDLTP- 370

Query: 295 VLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKL 336
            L +   +  L L+    T +     AN+ +  ++   +  L
Sbjct: 371 -LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL 411

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 82.7 bits (205), Expect = 1e-17
 Identities = 58/320 (18%), Positives = 109/320 (34%), Gaps = 65/320 (20%)

Query: 19  KSLTYLDISNNFLTQIEQ-HPWKNITVLNLQNNTIQGTI-LVPPPSTRAFLFSNNKLFGQ 76
            +L  LDIS+N ++ I       N+  L   NN I     L    +      + N+L  +
Sbjct: 177 TTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQL--K 234

Query: 77  IPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCD 136
              ++ SL++L  + L++N +S   P  L    T+LT L L  N +        A  +  
Sbjct: 235 DIGTLASLTNLTDLDLANNQISNLAP--LSGL-TKLTELKLGANQISN--ISPLAGLT-A 288

Query: 137 LRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFY 196
           L +L LN N+L    P  +++   L  + +  N I D  P  + SL  L+ L   +N+  
Sbjct: 289 LTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNK-- 342

Query: 197 GPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYY 256
             + +V+ +     +  +   HN+ +   P      L  +  +                 
Sbjct: 343 --VSDVSSLANLTNINWLSAGHNQISDLTP------LANLTRI----------------- 377

Query: 257 QDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSI 316
                                 T + L+   +         +         +  G     
Sbjct: 378 ----------------------TQLGLNDQAWTNAPVNYKANVSIPN-TVKNVTGAL-IA 413

Query: 317 PVSFANMIVLESLDLSSNKL 336
           P + ++       D++ N  
Sbjct: 414 PATISDGGSYTEPDITWNLP 433

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 80.0 bits (198), Expect = 1e-16
 Identities = 62/325 (19%), Positives = 113/325 (34%), Gaps = 69/325 (21%)

Query: 20  SLTYLDI-SNNFLTQIEQHPW-KNITVLNLQNNTIQGTI-LVPPPSTRAFLFSNNKLFGQ 76
            L    I  +  + QI             L    +  T+                 +  +
Sbjct: 2   PLGSATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGI--K 59

Query: 77  IPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCD 136
               +  L++L  I+ S+N L+   P  L N  T+L  + +NNN +    P   AN + +
Sbjct: 60  SIDGVEYLNNLTQINFSNNQLTDITP--LKNL-TKLVDILMNNNQIADITP--LANLT-N 113

Query: 137 LRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFY 196
           L  L L +N++    P  L + T L  + + +N I D   S L  L  L+ L   +    
Sbjct: 114 LTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQ--- 166

Query: 197 GPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYY 256
             + ++  +     L  +D+S N+ +          L  + N+                 
Sbjct: 167 --VTDLKPLANLTTLERLDISSNKVSDISV------LAKLTNL----------------- 201

Query: 257 QDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSI 316
                                  ++  ++NQ     P  LG   +L  L+L+ N L    
Sbjct: 202 ----------------------ESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-- 235

Query: 317 PVSFANMIVLESLDLSSNKLHGRIP 341
             + A++  L  LDL++N++    P
Sbjct: 236 IGTLASLTNLTDLDLANNQISNLAP 260

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 23/149 (15%), Positives = 52/149 (34%), Gaps = 11/149 (7%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ-HPWKNITVLNLQNNTIQG-TILV 58
           L+ N++      S+    K+LTYL +  N ++ I        +  L   NN +   + L 
Sbjct: 294 LNENQLEDISPISNL---KNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLA 350

Query: 59  PPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLN 118
              +       +N++       + +L+ +  + L+    +        N S   T+ ++ 
Sbjct: 351 NLTNINWLSAGHNQI--SDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVT 408

Query: 119 NNYLQGRIPDAFANGSCDLRSLGLNSNKL 147
              +    P   ++G        +  N  
Sbjct: 409 GALI---APATISDGG-SYTEPDITWNLP 433

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 88.1 bits (219), Expect = 6e-20
 Identities = 48/350 (13%), Positives = 93/350 (26%), Gaps = 84/350 (24%)

Query: 19  KSLTYLDISNNFLTQIEQHPWK--NITVLNLQNNTIQGTILVPP-------PSTRAFLFS 69
             L+      N         W+  N     ++  T +              P   A    
Sbjct: 30  DVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELR 89

Query: 70  NNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDA 129
           +  L  Q P   + LS L+++++    L   +P  +  F   L  L L  N L+  +P +
Sbjct: 90  SVPL-PQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQF-AGLETLTLARNPLR-ALPAS 145

Query: 130 FANGSCDLRSLGLNSNKLRGSFP---------RYLADCTGLEVVNVGNNMIGDTFPSWLG 180
            A+ +  LR L + +       P                 L+ + +    I  + P+ + 
Sbjct: 146 IASLNR-LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI-RSLPASIA 203

Query: 181 SLPGLKILVLRSNRFYGPLCEVNIMLPFE-----ALRIIDLSHNEFTGFLPRWIF--VSL 233
           +L  LK L +R++            L         L  +DL         P        L
Sbjct: 204 NLQNLKSLKIRNSPL--------SALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL 255

Query: 234 ETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIP 293
           +            L ++                                   +     +P
Sbjct: 256 KR-----------LILKD---------------------------------CSNLL-TLP 270

Query: 294 QVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQ 343
             +     L  L+L        +P   A +     + +  +        +
Sbjct: 271 LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 86.9 bits (216), Expect = 2e-19
 Identities = 41/250 (16%), Positives = 82/250 (32%), Gaps = 36/250 (14%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQI--EQHPWKNITVLNLQNNTIQGTILV 58
            +   ++      +         L++ +  L Q   +     ++  + +    +     +
Sbjct: 63  RTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLME---L 119

Query: 59  PP-----PSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFS---- 109
           P              + N L   +P SI SL+ L  +S+        +P  L +      
Sbjct: 120 PDTMQQFAGLETLTLARNPL-RALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178

Query: 110 ----TQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVN 165
                 L  L L    ++  +P + AN    L+SL + ++ L  +    +     LE ++
Sbjct: 179 HQGLVNLQSLRLEWTGIR-SLPASIANLQN-LKSLKIRNSPLS-ALGPAIHHLPKLEELD 235

Query: 166 VGNNMIGDTFPSWLGSLPGLKILVLRS-NRFYGPLCEVNIMLPFE-----ALRIIDLSHN 219
           +        +P   G    LK L+L+  +          + LP +      L  +DL   
Sbjct: 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNL--------LTLPLDIHRLTQLEKLDLRGC 287

Query: 220 EFTGFLPRWI 229
                LP  I
Sbjct: 288 VNLSRLPSLI 297

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 74.6 bits (184), Expect = 4e-15
 Identities = 39/333 (11%), Positives = 81/333 (24%), Gaps = 78/333 (23%)

Query: 19  KSLTYLDISNNFLTQIEQHPW--KNITVLNLQNNTIQGTILVPPPSTRAFLFSNN-KLFG 75
                L    +  T +  +             +     +      S    + +   +   
Sbjct: 12  SGRENLYFQGS--TALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALK 69

Query: 76  QIPPSIYSLSS--LEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANG 133
                +   +      + L    L    P       + L  + ++   L   +PD     
Sbjct: 70  ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRL-SHLQHMTIDAAGLM-ELPDTMQQF 126

Query: 134 SCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNV-GNNMIGDTFPSWLGSLPGLKILVLRS 192
           +  L +L L  N LR + P  +A    L  +++     +    P  L S           
Sbjct: 127 A-GLETLTLARNPLR-ALPASIASLNRLRELSIRACPELT-ELPEPLASTDASGEHQGLV 183

Query: 193 NRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGE 252
           N                 L+ + L        LP     S+  ++N+             
Sbjct: 184 N-----------------LQSLRLEWTGIR-SLPA----SIANLQNL------------- 208

Query: 253 EDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGL 312
                                      ++ + ++     +   +     L  L+L     
Sbjct: 209 --------------------------KSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTA 241

Query: 313 TGSIPVSFANMIVLESLDLSS-NKLHGRIPEQF 344
             + P  F     L+ L L   + L   +P   
Sbjct: 242 LRNYPPIFGGRAPLKRLILKDCSNLL-TLPLDI 273

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 68.8 bits (169), Expect = 3e-13
 Identities = 43/296 (14%), Positives = 80/296 (27%), Gaps = 72/296 (24%)

Query: 74  FGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNF-------------------STQLTI 114
            G      +  S  E +    +         L  +                   S    I
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQI 60

Query: 115 LHLNNNYLQGRIPDAFANGSCD-LRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGD 173
                  L+    D   + +     +L L S  L   FP      + L+ + +    +  
Sbjct: 61  ETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGL-M 117

Query: 174 TFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFE-----ALRIIDLSHNEFTGFLPRW 228
             P  +    GL+ L L  N            LP        LR + +        LP  
Sbjct: 118 ELPDTMQQFAGLETLTLARNPL--------RALPASIASLNRLRELSIRACPELTELP-- 167

Query: 229 IFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQF 288
                E + + D  G                           L  +     ++ L     
Sbjct: 168 -----EPLASTDASGEHQG-----------------------LVNL----QSLRLEWTGI 195

Query: 289 QGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQF 344
           +  +P  + + ++L  L + ++ L+ ++  +  ++  LE LDL         P  F
Sbjct: 196 R-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIF 249

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 66.9 bits (164), Expect = 1e-12
 Identities = 35/186 (18%), Positives = 57/186 (30%), Gaps = 27/186 (14%)

Query: 19  KSLTYLDIS-NNFLTQI-----------EQHPWKNITVLNLQNNTIQGTILVPPPST--- 63
             L  L I     LT++           E     N+  L L+   I+      P S    
Sbjct: 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR----SLPASIANL 205

Query: 64  ---RAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHL-NN 119
              ++    N+ L   + P+I+ L  LE + L         PP  G     L  L L + 
Sbjct: 206 QNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR-APLKRLILKDC 263

Query: 120 NYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWL 179
           + L   +P      +  L  L L         P  +A      ++ V  ++         
Sbjct: 264 SNLL-TLPLDIHRLTQ-LEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRP 321

Query: 180 GSLPGL 185
            + P  
Sbjct: 322 VARPAE 327

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 22/115 (19%), Positives = 40/115 (34%), Gaps = 14/115 (12%)

Query: 17  RWKSLTYLDISNNFLTQI--EQHPWKNITVLNLQNNTIQGTILVPPPS-------TRAFL 67
             ++L  L I N+ L+ +    H    +  L+L+  T        PP         R  L
Sbjct: 204 NLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNY---PPIFGGRAPLKRLIL 260

Query: 68  FSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYL 122
              + L   +P  I+ L+ LE + L        +P  +        I+ +  +  
Sbjct: 261 KDCSNL-LTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL-PANCIILVPPHLQ 313

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 89.4 bits (222), Expect = 7e-20
 Identities = 61/333 (18%), Positives = 114/333 (34%), Gaps = 42/333 (12%)

Query: 20  SLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGTILVPPPSTRAFL-------FS 69
            + Y+D+S N + ++ +      +++  L ++  T    I     +T   L         
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVI---RNNTFRGLSSLIILKLD 87

Query: 70  NNKLFGQIPPSIY-SLSSLEYISLSHNNL-SGTIPPCLGNFS--TQLTILHLNNNYLQGR 125
            N+   Q+    +  L++LE ++L+  NL    +      F   T L +L L +N ++  
Sbjct: 88  YNQF-LQLETGAFNGLANLEVLTLTQCNLDGAVLSG--NFFKPLTSLEMLVLRDNNIKKI 144

Query: 126 IPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGL 185
            P +F         L L  NK++      L +  G     +               L  +
Sbjct: 145 QPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL--------------RLSSI 190

Query: 186 KILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSD 245
            +  +         C         ++  +DLS N F   + +  F ++   K      S+
Sbjct: 191 TLQDMNEYWLGWEKCGNPFKNT--SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN 248

Query: 246 GLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVL 305
              M     +   +           L+       T DLS ++    +  V   F  L  L
Sbjct: 249 SYNMGSSFGH--TNFKDPDNFTFKGLEASGV--KTCDLSKSKIFALLKSVFSHFTDLEQL 304

Query: 306 NLSHNGLTGSIPV-SFANMIVLESLDLSSNKLH 337
            L+ N +   I   +F  +  L  L+LS N L 
Sbjct: 305 TLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLG 336

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 87.1 bits (216), Expect = 4e-19
 Identities = 62/368 (16%), Positives = 108/368 (29%), Gaps = 90/368 (24%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGTIL 57
           +        I  +  +   SL  L +  N   Q+E    +   N+ VL L    + G +L
Sbjct: 61  VEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVL 120

Query: 58  VPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHL 117
                     F               L+SLE + L  NN+    P        +  +L L
Sbjct: 121 ------SGNFFKP-------------LTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDL 161

Query: 118 NNNYLQGRIPDAFAN-GSCDLRSLGLNSNKLRGSFPRYLAD--------CTGLEVVNVGN 168
             N ++    +   N        L L+S  L+     +L           T +  +++  
Sbjct: 162 TFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSG 221

Query: 169 NMIGDTFPSWLGSLPG---LKILVLRSNRFYGPLCEVNIM----------LPFEALRIID 215
           N   ++             ++ L+L ++   G                  L    ++  D
Sbjct: 222 NGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCD 281

Query: 216 LSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRII 275
           LS ++    L + +F     +                                       
Sbjct: 282 LSKSKIF-ALLKSVFSHFTDL--------------------------------------- 301

Query: 276 TIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPV-SFANMIVLESLDLSSN 334
                + L+ N+              L+ LNLS N L  SI    F N+  LE LDLS N
Sbjct: 302 ---EQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYN 357

Query: 335 KLHGRIPE 342
            +   + +
Sbjct: 358 HIR-ALGD 364

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 60.1 bits (146), Expect = 3e-10
 Identities = 47/303 (15%), Positives = 85/303 (28%), Gaps = 83/303 (27%)

Query: 60  PPSTRAFLFSNNKLFGQIPP-SIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLN 118
           P        S N +  ++   S   L  L+++ +        I        + L IL L+
Sbjct: 29  PAHVNYVDLSLNSI-AELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87

Query: 119 NNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSW 178
            N    ++     NG  +L  L L    L G+                     G+ F   
Sbjct: 88  YNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLS------------------GNFFKP- 127

Query: 179 LGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKN 238
              L  L++LVLR N     +   +  L      ++DL+ N+    +     ++ +    
Sbjct: 128 ---LTSLEMLVLRDNNIKK-IQPASFFLNMRRFHVLDLTFNKVKS-ICEEDLLNFQGKH- 181

Query: 239 VDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGD 298
                                                  FT + LSS             
Sbjct: 182 ---------------------------------------FTLLRLSSITL---------- 192

Query: 299 FKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFARPDL 358
                  +++   L      +      + +LDLS N     + ++F DA   +      L
Sbjct: 193 ------QDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246

Query: 359 YTN 361
             +
Sbjct: 247 SNS 249

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 31/157 (19%), Positives = 64/157 (40%), Gaps = 34/157 (21%)

Query: 20  SLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQ 76
            +   D+S + +  + +     + ++  L L  N I                       +
Sbjct: 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN----------------------K 313

Query: 77  IPPSI-YSLSSLEYISLSHNNLSGTIPPCLGNFS--TQLTILHLNNNYLQGRIPDAFANG 133
           I  +  + L+ L  ++LS N L  +I      F    +L +L L+ N+++     +F   
Sbjct: 314 IDDNAFWGLTHLLKLNLSQNFLG-SIDS--RMFENLDKLEVLDLSYNHIRALGDQSFLGL 370

Query: 134 SCDLRSLGLNSNKLRGSFPRYLADC-TGLEVVNVGNN 169
             +L+ L L++N+L+ S P  + D  T L+ + +  N
Sbjct: 371 P-NLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 405

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 88.1 bits (218), Expect = 2e-19
 Identities = 48/342 (14%), Positives = 92/342 (26%), Gaps = 99/342 (28%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDIS----NNFLTQIEQHPWKNITVLNLQNNTIQGTI 56
              N I           W       +     N  ++ +++      + L L    +    
Sbjct: 17  SFYNTIS-GTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS--- 72

Query: 57  LVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILH 116
                               +P ++     +  + ++ N L  ++P    +    L  L 
Sbjct: 73  -------------------SLPDNL--PPQITVLEITQNALI-SLPELPAS----LEYLD 106

Query: 117 LNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFP 176
             +N L   +P+  A+    L+ L +++N+L    P        LE +N  NN +    P
Sbjct: 107 ACDNRLS-TLPELPAS----LKHLDVDNNQLT-MLPELP---ALLEYINADNNQLT-MLP 156

Query: 177 SWLGSLPGLKILVLRSNRFYGPLCEVNIMLP--FEALRIIDLSHNEFTGFLPRWIFVSLE 234
               SL   ++L +R+N+           LP   E+L  +D+S N     LP        
Sbjct: 157 ELPTSL---EVLSVRNNQL--------TFLPELPESLEALDVSTNLLES-LPAVPVR--- 201

Query: 235 TMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQ 294
                                                              N+    IP+
Sbjct: 202 ------------------------------------NHHSEETEIFFRCRENRIT-HIPE 224

Query: 295 VLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKL 336
            +        + L  N L+ S      +    +         
Sbjct: 225 NILSLDPTCTIILEDNPLS-SRIRESLSQQTAQPDYHGPRIY 265

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 60.0 bits (145), Expect = 4e-10
 Identities = 39/244 (15%), Positives = 66/244 (27%), Gaps = 33/244 (13%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQ------G 54
             NN++         +   SL  L + NN LT + + P +++  L++  N ++       
Sbjct: 147 ADNNQLT-----MLPELPTSLEVLSVRNNQLTFLPELP-ESLEALDVSTNLLESLPAVPV 200

Query: 55  TILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTI 114
                  +   F    N++   IP +I SL     I L  N LS +      +  T    
Sbjct: 201 RNHHSEETEIFFRCRENRI-THIPENILSLDPTCTIILEDNPLS-SRIRESLSQQTAQPD 258

Query: 115 LHLNNNYLQGRIPD----AFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNM 170
            H    Y                         N                     +   + 
Sbjct: 259 YHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDR 318

Query: 171 IGDT---------------FPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIID 215
           + DT               +   L +   L+             CE  + L +  LR   
Sbjct: 319 LSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTL 378

Query: 216 LSHN 219
           L H 
Sbjct: 379 LVHQ 382

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 49.2 bits (117), Expect = 1e-06
 Identities = 41/258 (15%), Positives = 70/258 (27%), Gaps = 86/258 (33%)

Query: 90  ISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRG 149
           I L  NN          N  +                   + +         L     R 
Sbjct: 3   IMLPINNNFSLSQNSFYNTISG--------------TYADYFSAWDKWEKQALPGE-NRN 47

Query: 150 SFPRYLADC--TGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLP 207
                L +C       + +    +  + P  L   P + +L +  N          I LP
Sbjct: 48  EAVSLLKECLINQFSELQLNRLNL-SSLPDNLP--PQITVLEITQNAL--------ISLP 96

Query: 208 --FEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVK 265
               +L  +D   N  +  LP     SL+ +                             
Sbjct: 97  ELPASLEYLDACDNRLS-TLPELP-ASLKHL----------------------------- 125

Query: 266 GRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIV 325
                           D+ +NQ    +P++      L  +N  +N LT  +P    +   
Sbjct: 126 ----------------DVDNNQLT-MLPELPA---LLEYINADNNQLT-MLPELPTS--- 161

Query: 326 LESLDLSSNKLHGRIPEQ 343
           LE L + +N+L   +PE 
Sbjct: 162 LEVLSVRNNQL-TFLPEL 178

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 47.3 bits (112), Expect = 6e-06
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 8/66 (12%)

Query: 279 TTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHG 338
           + + L+       +P  L     + VL ++ N L  S+P   A+   LE LD   N+L  
Sbjct: 62  SELQLNRLNLS-SLPDNLP--PQITVLEITQNALI-SLPELPAS---LEYLDACDNRLS- 113

Query: 339 RIPEQF 344
            +PE  
Sbjct: 114 TLPELP 119

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 40.7 bits (95), Expect = 7e-04
 Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 6/63 (9%)

Query: 282 DLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIP 341
             + N+    + + L        L L+   L+ S+P +      +  L+++ N L   +P
Sbjct: 43  GENRNEAVSLLKECL--INQFSELQLNRLNLS-SLPDNLPPQ--ITVLEITQNALI-SLP 96

Query: 342 EQF 344
           E  
Sbjct: 97  ELP 99

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 87.0 bits (216), Expect = 4e-19
 Identities = 74/345 (21%), Positives = 126/345 (36%), Gaps = 69/345 (20%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPW--KNITVLNLQNNTIQGTILV 58
           L+N  +      S  +    L  L  S N LT++ + P   K++ V N     +      
Sbjct: 78  LNNLGL-----SSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSD---- 128

Query: 59  PPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLN 118
            PP       SNN+L  +  P + + S L+ I + +N+L   +P    +    L  +   
Sbjct: 129 LPPLLEYLGVSNNQL--EKLPELQNSSFLKIIDVDNNSLK-KLPDLPPS----LEFIAAG 181

Query: 119 NNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSW 178
           NN L+  +P+   N    L ++  ++N L+   P        LE +  GNN++       
Sbjct: 182 NNQLE-ELPE-LQNLP-FLTAIYADNNSLK-KLPDLP---LSLESIVAGNNIL--EELPE 232

Query: 179 LGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKN 238
           L +LP L  +   +N          +     +L  +++  N  T  LP     SL  +  
Sbjct: 233 LQNLPFLTTIYADNNLL------KTLPDLPPSLEALNVRDNYLTD-LPELPQ-SLTFLDV 284

Query: 239 VDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGD 298
            +   S                          L  +      ++ SSN+ +  +  +   
Sbjct: 285 SENIFSG-------------------------LSELPPNLYYLNASSNEIR-SLCDLP-- 316

Query: 299 FKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQ 343
             SL  LN+S+N L   +P        LE L  S N L   +PE 
Sbjct: 317 -PSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLA-EVPEL 355

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 81.6 bits (202), Expect = 3e-17
 Identities = 56/338 (16%), Positives = 110/338 (32%), Gaps = 76/338 (22%)

Query: 19  KSLTYLDISNNFLTQI-EQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQI 77
            SL ++   NN L ++ E      +T +   NN+++  +   P S  + +  NN L  + 
Sbjct: 173 PSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLK-KLPDLPLSLESIVAGNNIL--EE 229

Query: 78  PPSIYSLSSLEYISLSHNNLSGTIPPCLGNFST----------------QLTILHLNNNY 121
            P + +L  L  I   +N L  T+P    +                    LT L ++ N 
Sbjct: 230 LPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENI 288

Query: 122 LQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGS 181
               + +   N    L  L  +SN++R S          LE +NV NN +    P+    
Sbjct: 289 FS-GLSELPPN----LYYLNASSNEIR-SLCDLP---PSLEELNVSNNKL-IELPALPPR 338

Query: 182 LPGLKILVLRSNRFYGPLCEVNIMLPFE--ALRIIDLSHNEFTGFLPRWIFVSLETMKNV 239
              L+ L+   N            +P     L+ + + +N    F         E+++++
Sbjct: 339 ---LERLIASFNHL--------AEVPELPQNLKQLHVEYNPLREFPD-----IPESVEDL 382

Query: 240 DEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDF 299
                                   +      +  +      + + +N  + E P +    
Sbjct: 383 R-----------------------MNSHLAEVPELPQNLKQLHVETNPLR-EFPDIPE-- 416

Query: 300 KSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLH 337
            S+  L ++   +      +      LE      +  H
Sbjct: 417 -SVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 76.2 bits (188), Expect = 2e-15
 Identities = 55/288 (19%), Positives = 90/288 (31%), Gaps = 84/288 (29%)

Query: 67  LFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGN------------FSTQLTI 114
           L  ++ L  ++P    ++ S      + +      PP  G                Q   
Sbjct: 17  LRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHE 75

Query: 115 LHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDT 174
           L LNN  L   +P+   +    L SL  + N L    P        L V N     + D 
Sbjct: 76  LELNNLGLS-SLPELPPH----LESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSD- 128

Query: 175 FPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLE 234
                   P L+ L + +N+    L ++  +     L+IID+ +N     LP     SL 
Sbjct: 129 ------LPPLLEYLGVSNNQ----LEKLPELQNSSFLKIIDVDNNSLK-KLPDLP-PSL- 175

Query: 235 TMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQ 294
                                                         I   +NQ + E+P+
Sbjct: 176 --------------------------------------------EFIAAGNNQLE-ELPE 190

Query: 295 VLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPE 342
            L +   L  +   +N L   +P    +   LES+   +N L   +PE
Sbjct: 191 -LQNLPFLTAIYADNNSLK-KLPDLPLS---LESIVAGNNILE-ELPE 232

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 66.9 bits (164), Expect = 2e-12
 Identities = 49/243 (20%), Positives = 88/243 (36%), Gaps = 43/243 (17%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHP-WKNITVLNLQNNTIQGTILVP 59
             NN +     K       SL  +   NN L ++ +      +T +   NN ++ T+   
Sbjct: 202 ADNNSL-----KKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLK-TLPDL 255

Query: 60  PPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNN 119
           PPS  A    +N L   +P    SL+ L+   +S N  S  +     N    L  L+ ++
Sbjct: 256 PPSLEALNVRDNYL-TDLPELPQSLTFLD---VSENIFS-GLSELPPN----LYYLNASS 306

Query: 120 NYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWL 179
           N ++  + D   +    L  L +++NKL    P   A    LE +    N +    P   
Sbjct: 307 NEIR-SLCDLPPS----LEELNVSNNKLI-ELP---ALPPRLERLIASFNHLA-EVPELP 356

Query: 180 GSLPGLKILVLRSNRFY------GPLCEVNI-----MLP--FEALRIIDLSHNEFTGFLP 226
            +L   K L +  N           + ++ +      +P   + L+ + +  N      P
Sbjct: 357 QNL---KQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFP 412

Query: 227 RWI 229
              
Sbjct: 413 DIP 415

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 36/171 (21%), Positives = 60/171 (35%), Gaps = 22/171 (12%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPP 60
            S+N IR     S      SL  L++SNN L ++   P   +  L    N +   +   P
Sbjct: 304 ASSNEIR-----SLCDLPPSLEELNVSNNKLIELPALP-PRLERLIASFNHLA-EVPELP 356

Query: 61  PSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNN 120
            + +      N L  + P    S+  L       N+    +P    N    L  LH+  N
Sbjct: 357 QNLKQLHVEYNPL-REFPDIPESVEDLR-----MNSHLAEVPELPQN----LKQLHVETN 406

Query: 121 YLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMI 171
            L+   PD   +    +  L +NS ++   +         LE     ++  
Sbjct: 407 PLR-EFPDIPES----VEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHH 452

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 85.3 bits (211), Expect = 6e-19
 Identities = 50/306 (16%), Positives = 99/306 (32%), Gaps = 59/306 (19%)

Query: 45  LNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPS---IYSLSSLEYISLSHNNLSGTI 101
           ++ + +  Q T ++   S +       ++  +I      +  +S L+ ++L +  ++GT 
Sbjct: 52  VDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTA 111

Query: 102 PPCLGNFS-TQLTILHLNNNYLQGR---IPDAFANGSCDLRSLGLNSNKLRGSFPRYLAD 157
           PP L   +   L IL+L N     R   + +        L+ L +            +  
Sbjct: 112 PPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171

Query: 158 CTGLEVVNVGNNMIGDTFPSW----LGSLPGLKILVLRSNRFYGPLCEVNIML-PFEALR 212
              L  +++ +N                 P L++L LR+     P    + +      L+
Sbjct: 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQ 231

Query: 213 IIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLK 272
            +DLSHN                +                                    
Sbjct: 232 GLDLSHNSLRDAAGAPSCDWPSQLN----------------------------------- 256

Query: 273 RIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLS 332
                  +++LS    + ++P+ L     L VL+LS+N L    P S   +  + +L L 
Sbjct: 257 -------SLNLSFTGLK-QVPKGL--PAKLSVLDLSYNRLD-RNP-SPDELPQVGNLSLK 304

Query: 333 SNKLHG 338
            N    
Sbjct: 305 GNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 74.2 bits (182), Expect = 5e-15
 Identities = 41/223 (18%), Positives = 69/223 (30%), Gaps = 27/223 (12%)

Query: 20  SLTYLDISNNFLT-----QIEQHPWKNITVLNLQNNTIQGTILVPP-------PSTRAFL 67
            L  L + N  +T      + +    ++ +LNL+N +                P  +   
Sbjct: 96  GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLS 155

Query: 68  FSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIP----PCLGNFSTQLTILHLNNNYLQ 123
            +           +    +L  + LS N   G        C   F   L +L L N  ++
Sbjct: 156 IAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFP-TLQVLALRNAGME 214

Query: 124 --GRIPDAFANGSCDLRSLGLNSNKLRGSFPR-YLADCTGLEVVNVGNNMIGDTFPSWLG 180
               +  A A     L+ L L+ N LR +         + L  +N+    +    P  L 
Sbjct: 215 TPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL-KQVPKGL- 272

Query: 181 SLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTG 223
               L +L L  NR    L           +  + L  N F  
Sbjct: 273 -PAKLSVLDLSYNR----LDRNPSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 68.0 bits (166), Expect = 4e-13
 Identities = 36/205 (17%), Positives = 65/205 (31%), Gaps = 56/205 (27%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLT-------QIEQHPWKNITVLNLQNNTIQ 53
           ++        S    + + +L+ LD+S+N           +    +  + VL L+N    
Sbjct: 156 IAQAHSL-NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA--- 211

Query: 54  GTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLT 113
                                G       +   L+ + LSHN+L         ++ +QL 
Sbjct: 212 ---------------GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLN 256

Query: 114 ILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGD 173
            L+L+   L+                            P+ L     L V+++  N + D
Sbjct: 257 SLNLSFTGLK--------------------------QVPKGLP--AKLSVLDLSYNRL-D 287

Query: 174 TFPSWLGSLPGLKILVLRSNRFYGP 198
             PS    LP +  L L+ N F   
Sbjct: 288 RNPS-PDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 53.7 bits (129), Expect = 3e-08
 Identities = 35/176 (19%), Positives = 56/176 (31%), Gaps = 28/176 (15%)

Query: 179 LGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTG---FLPRWIFVSLET 235
           +  + GL+ L L +    G      +      L I++L +  +     +L          
Sbjct: 91  VLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPG 150

Query: 236 MKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIP-- 293
           +K +    +  L    E                    R+    +T+DLS N   GE    
Sbjct: 151 LKVLSIAQAHSLNFSCE------------------QVRVFPALSTLDLSDNPELGERGLI 192

Query: 294 --QVLGDFKSLIVLNLSHNGLT---GSIPVSFANMIVLESLDLSSNKLHGRIPEQF 344
                  F +L VL L + G+    G      A  + L+ LDLS N L        
Sbjct: 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS 248

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 84.8 bits (210), Expect = 2e-18
 Identities = 62/322 (19%), Positives = 102/322 (31%), Gaps = 77/322 (23%)

Query: 20  SLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPP 79
             + +  +   L+++ Q    N   LNL  N IQ          +A  F +         
Sbjct: 55  QFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQ--------MIQADTFRH--------- 97

Query: 80  SIYSLSSLEYISLSHNNLSGTIPPCLGNFS--TQLTILHLNNNYLQGRIPDAFANGSCDL 137
               L  LE + L  N++   I    G F+    L  L L +N+L      AF      L
Sbjct: 98  ----LHHLEVLQLGRNSIR-QIEV--GAFNGLASLNTLELFDNWLTVIPSGAFE-YLSKL 149

Query: 138 RSLGLNSNKLRGSFPRYLADCTGLEVVNVGN-NMIGDTFPSWLGSLPGLKILVLRSNRFY 196
           R L L +N +             L  +++G    +          L  LK L L      
Sbjct: 150 RELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-- 207

Query: 197 GPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYY 256
             + ++  + P   L  +++S N F   +    F  L ++K                   
Sbjct: 208 --IKDMPNLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLK------------------- 245

Query: 257 QDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSI 316
                                   + + ++Q             SL+ LNL+HN L+ S+
Sbjct: 246 -----------------------KLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SL 281

Query: 317 PVS-FANMIVLESLDLSSNKLH 337
           P   F  +  L  L L  N  +
Sbjct: 282 PHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 78.6 bits (194), Expect = 3e-16
 Identities = 46/203 (22%), Positives = 75/203 (36%), Gaps = 18/203 (8%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNN---TIQG 54
           L  N IR +I         SL  L++ +N+LT I          +  L L+NN   +I  
Sbjct: 106 LGRNSIR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPS 164

Query: 55  TILVPPPSTRA-FLFSNNKLFGQIPPSI-YSLSSLEYISLSHNNLSGTIPPCLGNFS--T 110
                 PS     L    KL   I       L +L+Y++L   N+   +P    N +   
Sbjct: 165 YAFNRVPSLMRLDLGELKKL-EYISEGAFEGLFNLKYLNLGMCNIK-DMP----NLTPLV 218

Query: 111 QLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNM 170
            L  L ++ N+     P +F   S  L+ L + ++++             L  +N+ +N 
Sbjct: 219 GLEELEMSGNHFPEIRPGSFHGLS-SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN 277

Query: 171 IGDTFPSWLGSLPGLKILVLRSN 193
           +          L  L  L L  N
Sbjct: 278 LSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 71.7 bits (176), Expect = 6e-14
 Identities = 46/262 (17%), Positives = 83/262 (31%), Gaps = 28/262 (10%)

Query: 85  SSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNS 144
           +    +  +   LS  +P       +    L+L  N +Q    D F +    L  L L  
Sbjct: 54  NQFSKVVCTRRGLS-EVPQ---GIPSNTRYLNLMENNIQMIQADTFRHLH-HLEVLQLGR 108

Query: 145 NKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNI 204
           N +R            L  + + +N +          L  L+ L LR+N           
Sbjct: 109 NSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPI--ESIPSYA 166

Query: 205 MLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTV 264
                +L  +DL   +   ++    F  L  +K         L +         ++T  V
Sbjct: 167 FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKY--------LNLGMCNIKDMPNLTPLV 218

Query: 265 KGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMI 324
              +L            ++S N F    P       SL  L + ++ ++     +F  + 
Sbjct: 219 GLEEL------------EMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLA 266

Query: 325 VLESLDLSSNKLHGRIPEQFVD 346
            L  L+L+ N L   +P     
Sbjct: 267 SLVELNLAHNNLS-SLPHDLFT 287

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 84.4 bits (209), Expect = 4e-18
 Identities = 62/322 (19%), Positives = 101/322 (31%), Gaps = 77/322 (23%)

Query: 20  SLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPP 79
             + +      L ++      N  +LNL  N IQ          +   F +         
Sbjct: 44  QFSKVICVRKNLREVPDGISTNTRLLNLHENQIQ--------IIKVNSFKH--------- 86

Query: 80  SIYSLSSLEYISLSHNNLSGTIPPCLGNFS--TQLTILHLNNNYLQGRIPDAFANGSCDL 137
               L  LE + LS N++  TI    G F+    L  L L +N L      AF      L
Sbjct: 87  ----LRHLEILQLSRNHIR-TIEI--GAFNGLANLNTLELFDNRLTTIPNGAFV-YLSKL 138

Query: 138 RSLGLNSNKLRGSFPRYLADCTGLEVVNVG-NNMIGDTFPSWLGSLPGLKILVLRSNRFY 196
           + L L +N +             L  +++G    +          L  L+ L L      
Sbjct: 139 KELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-- 196

Query: 197 GPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYY 256
             L E+  + P   L  +DLS N  +  +    F  L  ++                   
Sbjct: 197 --LREIPNLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQ------------------- 234

Query: 257 QDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSI 316
                                   + +  +Q Q        + +SL+ +NL+HN LT  +
Sbjct: 235 -----------------------KLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LL 270

Query: 317 PVS-FANMIVLESLDLSSNKLH 337
           P   F  +  LE + L  N  +
Sbjct: 271 PHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 82.9 bits (205), Expect = 1e-17
 Identities = 56/247 (22%), Positives = 92/247 (37%), Gaps = 39/247 (15%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGTIL 57
           L  N+I+  I  +  +  + L  L +S N +  IE    +   N+  L L +N +     
Sbjct: 71  LHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT---- 125

Query: 58  VPPPSTRAFLFSNNKLFGQIPPSI-YSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILH 116
                              IP      LS L+ + L +N +  +IP    N    L  L 
Sbjct: 126 ------------------TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLD 166

Query: 117 L-NNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTF 175
           L     L      AF  G  +LR L L    LR   P  L     L+ +++  N +    
Sbjct: 167 LGELKRLSYISEGAFE-GLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIR 223

Query: 176 PSWLGSLPGLKILVLRSNRFYGPLCEV--NIMLPFEALRIIDLSHNEFTGFLPRWIFVSL 233
           P     L  L+ L +  ++    +  +  N     ++L  I+L+HN  T  LP  +F  L
Sbjct: 224 PGSFQGLMHLQKLWMIQSQ----IQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPL 278

Query: 234 ETMKNVD 240
             ++ + 
Sbjct: 279 HHLERIH 285

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 77.9 bits (192), Expect = 5e-16
 Identities = 49/203 (24%), Positives = 79/203 (38%), Gaps = 18/203 (8%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNN---TIQG 54
           LS N IR  I         +L  L++ +N LT I          +  L L+NN   +I  
Sbjct: 95  LSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPS 153

Query: 55  TILVPPPSTRA-FLFSNNKLFGQIPPSI-YSLSSLEYISLSHNNLSGTIPPCLGNFS--T 110
                 PS R   L    +L   I       LS+L Y++L+  NL   IP    N +   
Sbjct: 154 YAFNRIPSLRRLDLGELKRL-SYISEGAFEGLSNLRYLNLAMCNLR-EIP----NLTPLI 207

Query: 111 QLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNM 170
           +L  L L+ N+L    P +F      L+ L +  ++++        +   L  +N+ +N 
Sbjct: 208 KLDELDLSGNHLSAIRPGSFQGLM-HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN 266

Query: 171 IGDTFPSWLGSLPGLKILVLRSN 193
           +          L  L+ + L  N
Sbjct: 267 LTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 72.9 bits (179), Expect = 2e-14
 Identities = 46/260 (17%), Positives = 84/260 (32%), Gaps = 41/260 (15%)

Query: 85  SSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNS 144
           +    +     NL   +P      ST   +L+L+ N +Q    ++F +    L  L L+ 
Sbjct: 43  NQFSKVICVRKNLR-EVPD---GISTNTRLLNLHENQIQIIKVNSFKHLR-HLEILQLSR 97

Query: 145 NKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNI 204
           N +R            L  + + +N +          L  LK L LR+N     +  +  
Sbjct: 98  NHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP----IESIPS 153

Query: 205 ML--PFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTV 262
                  +LR +DL   +   ++    F  L  ++         L +             
Sbjct: 154 YAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRY--------LNLAMCN--------- 196

Query: 263 TVKGRDLVLKRIITIF-----TTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIP 317
                   L+ I  +        +DLS N      P        L  L +  + +     
Sbjct: 197 --------LREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIER 248

Query: 318 VSFANMIVLESLDLSSNKLH 337
            +F N+  L  ++L+ N L 
Sbjct: 249 NAFDNLQSLVEINLAHNNLT 268

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 58.2 bits (141), Expect = 2e-09
 Identities = 49/246 (19%), Positives = 86/246 (34%), Gaps = 54/246 (21%)

Query: 104 CLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEV 163
           C   FS     +      L+  +PD     S + R L L+ N+++            LE+
Sbjct: 41  CSNQFSK----VICVRKNLR-EVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEI 92

Query: 164 VNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEV--NIMLPFEALRIIDLSHNEF 221
           + +  N I          L  L  L L  NR    L  +     +    L+ + L +N  
Sbjct: 93  LQLSRNHIRTIEIGAFNGLANLNTLELFDNR----LTTIPNGAFVYLSKLKELWLRNNPI 148

Query: 222 TGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITI---- 277
              +P + F  + +++         L +                     LKR+  I    
Sbjct: 149 E-SIPSYAFNRIPSLRR--------LDLGE-------------------LKRLSYISEGA 180

Query: 278 F------TTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDL 331
           F        ++L+    + EIP  L     L  L+LS N L+   P SF  ++ L+ L +
Sbjct: 181 FEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWM 238

Query: 332 SSNKLH 337
             +++ 
Sbjct: 239 IQSQIQ 244

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 83.6 bits (207), Expect = 4e-18
 Identities = 59/330 (17%), Positives = 105/330 (31%), Gaps = 80/330 (24%)

Query: 20  SLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQ 76
           ++  LD+SNN +T I         N+  L L +N I                        
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN----------------------T 90

Query: 77  IPPSI-YSLSSLEYISLSHNNLSGTIPPCLGNFS--TQLTILHLNNNYLQGRIPDAFANG 133
           I      SL SLE++ LS+N LS  +      F   + LT L+L  N  +     +  + 
Sbjct: 91  IEEDSFSSLGSLEHLDLSYNYLS-NLSS--SWFKPLSSLTFLNLLGNPYKTLGETSLFSH 147

Query: 134 SCDLRSLGLNSN-KLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRS 192
              L+ L + +         +  A  T LE + +  + +    P  L S+  +  L+L  
Sbjct: 148 LTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHM 207

Query: 193 NRFYGPLCEVNIMLPFEALRIIDLSHNEFTGF----LPRWIFVSLETMKNVDEKGSDGLY 248
            +    L     +    ++  ++L   +   F    L      SL               
Sbjct: 208 KQHI--LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFT---------- 255

Query: 249 MQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLS 308
                                        F  + ++      ++ ++L     L+ L  S
Sbjct: 256 -----------------------------FRNVKITDESLF-QVMKLLNQISGLLELEFS 285

Query: 309 HNGLTGSIPVS-FANMIVLESLDLSSNKLH 337
            N L  S+P   F  +  L+ + L +N   
Sbjct: 286 RNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 70.9 bits (174), Expect = 6e-14
 Identities = 55/330 (16%), Positives = 96/330 (29%), Gaps = 76/330 (23%)

Query: 25  DISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSI-YS 83
             S+  L  I     + +  L+L NN I                        I  S    
Sbjct: 37  KGSSGSLNSIPSGLTEAVKSLDLSNNRIT----------------------YISNSDLQR 74

Query: 84  LSSLEYISLSHNNLSGTIPPCLGNFS--TQLTILHLNNNYLQGRIPDAFANGSCDLRSLG 141
             +L+ + L+ N ++ TI     +FS    L  L L+ NYL       F   S  L  L 
Sbjct: 75  CVNLQALVLTSNGIN-TIEE--DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLS-SLTFLN 130

Query: 142 LNSNKLRGSFPRYL-ADCTGLEVVNVGNNM-IGDTFPSWLGSLPGLKILVLRSNRFYGPL 199
           L  N  +      L +  T L+++ VGN              L  L+ L + ++     L
Sbjct: 131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD----L 186

Query: 200 CEV--NIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQ 257
                  +   + +  + L   +    L                                
Sbjct: 187 QSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVT------------------------ 221

Query: 258 DSVTVTVKGRDLVLKRI-ITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSI 316
                      L L+   +  F   +LS+ +        L    +   + ++   L   +
Sbjct: 222 ------SSVECLELRDTDLDTFHFSELSTGETNS-----LIKKFTFRNVKITDESLF-QV 269

Query: 317 PVSFANMIVLESLDLSSNKLHGRIPEQFVD 346
                 +  L  L+ S N+L   +P+   D
Sbjct: 270 MKLLNQISGLLELEFSRNQLKS-VPDGIFD 298

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 62.4 bits (152), Expect = 5e-11
 Identities = 40/266 (15%), Positives = 81/266 (30%), Gaps = 48/266 (18%)

Query: 73  LFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFAN 132
                  +  S         S  +L+ +IP      +  +  L L+NN +          
Sbjct: 19  KEESSNQASLSCDRNGICKGSSGSLN-SIPS---GLTEAVKSLDLSNNRITYISNSDLQR 74

Query: 133 GSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRS 192
              +L++L L SN +        +    LE +++  N + +   SW   L  L  L L  
Sbjct: 75  CV-NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLG 133

Query: 193 NRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGE 252
           N +   L E ++      L+I+ + + +    + R  F  L  +                
Sbjct: 134 NPYKT-LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFL---------------- 176

Query: 253 EDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGL 312
                                       +++ ++  Q   P+ L   +++  L L     
Sbjct: 177 --------------------------EELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210

Query: 313 TGSIPVSFANMIVLESLDLSSNKLHG 338
              + +       +E L+L    L  
Sbjct: 211 ILLLEIFVDVTSSVECLELRDTDLDT 236

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 16/134 (11%), Positives = 47/134 (35%), Gaps = 17/134 (12%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPWK---NITVLNLQNNTIQGTIL 57
           +  + ++        +  +++++L +       + +       ++  L L++  +     
Sbjct: 181 IDASDLQ-SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHF 239

Query: 58  VPPPSTRAFLF-----------SNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLG 106
               +                 ++  LF Q+   +  +S L  +  S N L  ++P  + 
Sbjct: 240 SELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIF 297

Query: 107 NFSTQLTILHLNNN 120
           +  T L  + L+ N
Sbjct: 298 DRLTSLQKIWLHTN 311

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 83.0 bits (205), Expect = 1e-17
 Identities = 61/351 (17%), Positives = 119/351 (33%), Gaps = 44/351 (12%)

Query: 19  KSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGTILVPPPSTRAFL-------F 68
           +  T L+IS N+++++          + +L + +N IQ        S   F         
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYL----DISVFKFNQELEYLDL 76

Query: 69  SNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFS--TQLTILHLNNNYLQGRI 126
           S+NKL  +I    +   +L+++ LS N     +P C   F   +QL  L L+  +L+   
Sbjct: 77  SHNKL-VKIS--CHPTVNLKHLDLSFNAFD-ALPIC-KEFGNMSQLKFLGLSTTHLEKSS 131

Query: 127 PDAFANGSCDLRSLGLNSNKLRGSFPRYLADC--TGLEVVNVGNNMIGDTFPSWLGSLPG 184
               A+ +     L L         P  L D     L +V   N          + ++  
Sbjct: 132 VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVAN 191

Query: 185 LKILVLRSNRFYG---------PLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLET 235
           L++  ++                  + N  L    L  I+ + N F   L      ++  
Sbjct: 192 LELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWY 251

Query: 236 MKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITI----------FTTIDLSS 285
             ++      G     + DY   S+   +    +V                     + + 
Sbjct: 252 F-SISNVKLQGQLDFRDFDYSGTSLK-ALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTV 309

Query: 286 NQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKL 336
           +  +             + L+ S+N LT ++  +  ++  LE+L L  N+L
Sbjct: 310 SGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL 360

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 71.0 bits (174), Expect = 1e-13
 Identities = 50/342 (14%), Positives = 114/342 (33%), Gaps = 37/342 (10%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPP 60
              N+    I     +   +L   +I          +    +  L               
Sbjct: 172 FPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSN------- 224

Query: 61  PSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFS----TQLTILH 116
            +      + N         +   +++ Y S+S+  L G +     ++S      L+I  
Sbjct: 225 LTLNNIETTWNSFIR--ILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQ 282

Query: 117 LNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFP 176
           + ++         +   S ++       +  R       +  +    ++  NN++ DT  
Sbjct: 283 VVSDVFGFPQSYIYEIFS-NMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVF 341

Query: 177 SWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETM 236
              G L  L+ L+L+ N+         +    ++L+ +D+S N  +    +      +++
Sbjct: 342 ENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401

Query: 237 KNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVL 296
            +        L M                  D + + +      +DL SN+ +  IP+ +
Sbjct: 402 LS--------LNMSSN------------ILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQV 440

Query: 297 GDFKSLIVLNLSHNGLTGSIPV-SFANMIVLESLDLSSNKLH 337
              ++L  LN++ N L  S+P   F  +  L+ + L +N   
Sbjct: 441 VKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 62.6 bits (152), Expect = 6e-11
 Identities = 49/332 (14%), Positives = 102/332 (30%), Gaps = 54/332 (16%)

Query: 60  PPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNN 119
              T     S N +       I SLS L  + +SHN +   +   +  F+ +L  L L++
Sbjct: 20  SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSH 78

Query: 120 NYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPR--YLADCTGLEVVNVGNNMIGDTFPS 177
           N L         N    L+ L L+ N    + P      + + L+ + +    +  +   
Sbjct: 79  NKLVKISCHPTVN----LKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLEKSSVL 133

Query: 178 WLGSLPGLKILVLRSNRFYGPLCEVNIM-LPFEALRIIDLSHNEFTGFLPRWIFVSLETM 236
            +  L   K+L++    +        +     E+L I+  ++ EF  F+      ++  +
Sbjct: 134 PIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFH-FILDVSVKTVANL 192

Query: 237 KNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRI---------------------- 274
           +  + K                 +    K  +L L  I                      
Sbjct: 193 ELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF 252

Query: 275 ----------------------ITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGL 312
                                 +   +   + S+ F      +   F ++ + N + +G 
Sbjct: 253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT 312

Query: 313 TGSIPVSFANMIVLESLDLSSNKLHGRIPEQF 344
                +  + +     LD S+N L   + E  
Sbjct: 313 RMVHMLCPSKISPFLHLDFSNNLLTDTVFENC 344

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 80.8 bits (200), Expect = 2e-17
 Identities = 43/201 (21%), Positives = 74/201 (36%), Gaps = 12/201 (5%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNN----TIQ 53
           L  NRI   +  +  +  ++LT L + +N L +I+         +  L+L +N    ++ 
Sbjct: 39  LHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD 97

Query: 54  GTILVPPPSTRAFLFSNNKLFGQIPPSI-YSLSSLEYISLSHNNLSGTIPPCLGNFSTQL 112
                              L  ++ P +   L++L+Y+ L  N L   +P         L
Sbjct: 98  PATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNL 155

Query: 113 TILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIG 172
           T L L+ N +      AF      L  L L+ N++    P    D   L  + +  N + 
Sbjct: 156 THLFLHGNRISSVPERAFRGLH-SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214

Query: 173 DTFPSWLGSLPGLKILVLRSN 193
                 L  L  L+ L L  N
Sbjct: 215 ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 79.3 bits (196), Expect = 5e-17
 Identities = 42/226 (18%), Positives = 75/226 (33%), Gaps = 32/226 (14%)

Query: 20  SLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQ 76
           +   + +  N ++ +        +N+T+L L +N +                       +
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA----------------------R 70

Query: 77  IPPSI-YSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIP-DAFANGS 134
           I  +    L+ LE + LS N    ++ P   +   +L  LHL+   LQ  +    F   +
Sbjct: 71  IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLA 129

Query: 135 CDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNR 194
             L+ L L  N L+        D   L  + +  N I          L  L  L+L  NR
Sbjct: 130 -ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 188

Query: 195 FYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVD 240
                   +       L  + L  N  +  LP      L  ++ + 
Sbjct: 189 VAH--VHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLR 231

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 69.3 bits (170), Expect = 2e-13
 Identities = 53/276 (19%), Positives = 87/276 (31%), Gaps = 64/276 (23%)

Query: 70  NNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDA 129
             +    +P  I   ++ + I L  N +S  +P         LTIL L++N L      A
Sbjct: 19  PQQGLQAVPVGI--PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAA 75

Query: 130 FANGSCDLRSLGLNSN-KLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKIL 188
           F   +  L  L L+ N +LR   P        L  +++    + +  P     L  L+ L
Sbjct: 76  FTGLA-LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL 134

Query: 189 VLRSNRFYGPLCEVNIMLPFEA------LRIIDLSHNEFTGFLPRWIFVSLETMKNVDEK 242
            L+ N            LP +       L  + L  N  +  +P   F  L ++      
Sbjct: 135 YLQDNALQ--------ALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSL------ 179

Query: 243 GSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSL 302
                                                 + L  N+     P    D   L
Sbjct: 180 ------------------------------------DRLLLHQNRVAHVHPHAFRDLGRL 203

Query: 303 IVLNLSHNGLTGSIPVS-FANMIVLESLDLSSNKLH 337
           + L L  N L+ ++P    A +  L+ L L+ N   
Sbjct: 204 MTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 46/256 (17%), Positives = 71/256 (27%), Gaps = 67/256 (26%)

Query: 90  ISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRG 149
            S     L   +P            + L+ N +      +F     +L  L L+SN L  
Sbjct: 16  TSCPQQGLQ-AVPV---GIPAASQRIFLHGNRISHVPAASFRACR-NLTILWLHSNVLAR 70

Query: 150 SFPRYLADCTGLEVVNVGNNM-IGDTFPSWLGSLPGLKILVLRSNR--------FYGPLC 200
                      LE +++ +N  +    P+    L  L  L L            F G   
Sbjct: 71  IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG--- 127

Query: 201 EVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSV 260
                L   AL+ + L  N     LP   F  L  +                        
Sbjct: 128 -----LA--ALQYLYLQDNALQ-ALPDDTFRDLGNL------------------------ 155

Query: 261 TVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSF 320
                             T + L  N+      +      SL  L L  N +    P +F
Sbjct: 156 ------------------THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 197

Query: 321 ANMIVLESLDLSSNKL 336
            ++  L +L L +N L
Sbjct: 198 RDLGRLMTLYLFANNL 213

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 43.1 bits (102), Expect = 7e-05
 Identities = 17/104 (16%), Positives = 37/104 (35%), Gaps = 9/104 (8%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQH---PWKNITVLNLQNN---TIQG 54
           L +N ++  +     +   +LT+L +  N ++ + +       ++  L L  N    +  
Sbjct: 136 LQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP 194

Query: 55  TILVPPPSTRAFLFSNNKLFGQIPPSIY-SLSSLEYISLSHNNL 97
                           N L   +P      L +L+Y+ L+ N  
Sbjct: 195 HAFRDLGRLMTLYLFANNL-SALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 16/63 (25%), Positives = 24/63 (38%)

Query: 279 TTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHG 338
             I L  N+            ++L +L L  N L      +F  + +LE LDLS N    
Sbjct: 35  QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94

Query: 339 RIP 341
            + 
Sbjct: 95  SVD 97

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 78.6 bits (194), Expect = 3e-16
 Identities = 69/343 (20%), Positives = 116/343 (33%), Gaps = 47/343 (13%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPP 60
             N+ I      +  ++   LT L  ++N +T ++     N+T L   +N +    + P 
Sbjct: 49  CHNSSIT---DMTGIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNLDVTPL 105

Query: 61  PSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNN 120
                     NKL  ++  S      L Y++ + N L+  I   + +  TQLT L  + N
Sbjct: 106 TKLTYLNCDTNKL-TKLDVS--QNPLLTYLNCARNTLT-EID--VSHN-TQLTELDCHLN 158

Query: 121 YLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLG 180
                I          L +L  + NK+       ++    L  +N   N I       L 
Sbjct: 159 KK---ITKLDVTPQTQLTTLDCSFNKIT-ELD--VSQNKLLNRLNCDTNNI-TKLD--LN 209

Query: 181 SLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLET----- 235
               L  L   SN+    L E+++  P   L   D S N  T  L       L T     
Sbjct: 210 QNIQLTFLDCSSNK----LTEIDV-TPLTQLTYFDCSVNPLTE-LDVSTLSKLTTLHCIQ 263

Query: 236 --MKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIP 293
             +  +D   +  L     E   +           L           +D  +     E+ 
Sbjct: 264 TDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQL---------YLLDCQAAGIT-ELD 313

Query: 294 QVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKL 336
             L     L+ L L++  LT  + VS  +   L+SL   +  +
Sbjct: 314 --LSQNPKLVYLYLNNTELT-ELDVS--HNTKLKSLSCVNAHI 351

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 65.9 bits (161), Expect = 5e-12
 Identities = 51/336 (15%), Positives = 101/336 (30%), Gaps = 54/336 (16%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPP 60
             +N++    +  D      LTYL+   N LT+++      +T LN   NT+    +   
Sbjct: 92  CDSNKL----TNLDVTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEIDVSHN 147

Query: 61  PSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNN 120
                     NK        +   + L  +  S N ++  +   +      L  L+ + N
Sbjct: 148 TQLTELDCHLNKKIT--KLDVTPQTQLTTLDCSFNKIT-ELD--VSQN-KLLNRLNCDTN 201

Query: 121 YLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLG 180
            +  ++     N +  L  L  +SNKL       +   T L   +   N +       + 
Sbjct: 202 NIT-KLD---LNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPL-TELD--VS 251

Query: 181 SLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVD 240
           +L  L  L          L E+++      L             L       L       
Sbjct: 252 TLSKLTTLHCIQTD----LLEIDL-THNTQLIYFQAEGCRKIKELDVTHNTQLYL----- 301

Query: 241 EKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFK 300
                 L  Q         +T      +L L +   +   + L++ +   E+   +    
Sbjct: 302 ------LDCQA------AGIT------ELDLSQNPKL-VYLYLNNTELT-ELD--VSHNT 339

Query: 301 SLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKL 336
            L  L+  +  +      S   +  L +   +  + 
Sbjct: 340 KLKSLSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQT 373

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 59.7 bits (145), Expect = 5e-10
 Identities = 51/319 (15%), Positives = 94/319 (29%), Gaps = 74/319 (23%)

Query: 19  KSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQG-TILVPPPSTRAFLFSNNKLFGQI 77
            S             I +     +T L+  N++I   T +         + ++N +   +
Sbjct: 21  ASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNI-TTL 79

Query: 78  PPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDL 137
             S    ++L Y++   N L+  +   +    T+LT L+ + N L              L
Sbjct: 80  DLS--QNTNLTYLACDSNKLT-NLD--VTPL-TKLTYLNCDTNKLTKLDVSQNPL----L 129

Query: 138 RSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYG 197
             L    N L       ++  T L  ++   N         +     L  L    N+   
Sbjct: 130 TYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNK--- 181

Query: 198 PLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQ 257
            + E+++    + L  ++   N  T        + L     +                  
Sbjct: 182 -ITELDV-SQNKLLNRLNCDTNNITK-------LDLNQNIQL------------------ 214

Query: 258 DSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIP 317
                                T +D SSN+   EI   +     L   + S N LT  + 
Sbjct: 215 ---------------------TFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLT-ELD 249

Query: 318 VSFANMIVLESLDLSSNKL 336
           VS   +  L +L      L
Sbjct: 250 VS--TLSKLTTLHCIQTDL 266

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 50/319 (15%), Positives = 90/319 (28%), Gaps = 74/319 (23%)

Query: 19  KSLTYLDISNNFLTQIEQ-HPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQI 77
            +LT LD  N+ +T +        +T L   +N I    L    +       +NKL   +
Sbjct: 42  ATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKL-TNL 100

Query: 78  PPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDL 137
              +  L+ L Y++   N L+  +       +  LT L+   N L              L
Sbjct: 101 D--VTPLTKLTYLNCDTNKLT-KLDVSQ---NPLLTYLNCARNTLTEIDVSHNTQ----L 150

Query: 138 RSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYG 197
             L  + NK        +   T L  ++   N I       +     L  L   +N    
Sbjct: 151 TELDCHLNKKITKLD--VTPQTQLTTLDCSFNKI-TELD--VSQNKLLNRLNCDTNN--- 202

Query: 198 PLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQ 257
            + ++++      L  +D S N+ T          +  +  +                  
Sbjct: 203 -ITKLDL-NQNIQLTFLDCSSNKLTEI-------DVTPLTQL------------------ 235

Query: 258 DSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIP 317
                                T  D S N    E+   +     L  L+     L   I 
Sbjct: 236 ---------------------TYFDCSVNPLT-ELD--VSTLSKLTTLHCIQTDLL-EID 270

Query: 318 VSFANMIVLESLDLSSNKL 336
           ++  +   L        + 
Sbjct: 271 LT--HNTQLIYFQAEGCRK 287

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 54/282 (19%), Positives = 91/282 (32%), Gaps = 69/282 (24%)

Query: 55  TILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTI 114
               P  +  + + +  ++      S   L++L  +   +++++  +   +    T LT 
Sbjct: 12  NDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTG-IEKL-TGLTK 68

Query: 115 LHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDT 174
           L   +N +     D   N +  L  L  +SNKL  +    +   T L  +N   N +   
Sbjct: 69  LICTSNNITT--LDLSQNTN--LTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLTKL 121

Query: 175 FPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLE 234
             S     P L  L    N     L E+++      L  +D   N+    L       L 
Sbjct: 122 DVS---QNPLLTYLNCARNT----LTEIDV-SHNTQLTELDCHLNKKITKLDVTPQTQL- 172

Query: 235 TMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQ 294
                                                       TT+D S N+   E+  
Sbjct: 173 --------------------------------------------TTLDCSFNKIT-ELD- 186

Query: 295 VLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKL 336
            +   K L  LN   N +T  + ++    I L  LD SSNKL
Sbjct: 187 -VSQNKLLNRLNCDTNNIT-KLDLN--QNIQLTFLDCSSNKL 224

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 16/115 (13%), Positives = 36/115 (31%), Gaps = 3/115 (2%)

Query: 10  ISKSDSQRWKSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFS 69
           I + D      L  LD     +T+++      +  L L N  +    +      ++    
Sbjct: 288 IKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELDVSHNTKLKSLSCV 347

Query: 70  NNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQG 124
           N  +  Q   S+  + +L     +      T+P      ++    +  +     G
Sbjct: 348 NAHI--QDFSSVGKIPALNNNFEAEGQTI-TMPKETLTNNSLTIAVSPDLLDQFG 399

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 78.0 bits (192), Expect = 6e-16
 Identities = 56/346 (16%), Positives = 114/346 (32%), Gaps = 38/346 (10%)

Query: 20  SLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGTILVPPPSTRAFL-------FS 69
               L +S N ++++          + VL L +N I+ ++         F         S
Sbjct: 53  RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SL---DFHVFLFNQDLEYLDVS 108

Query: 70  NNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFS--TQLTILHLNNNYLQGRIP 127
           +N+L   I      ++SL ++ LS N+    +P C   F   T+LT L L+    +    
Sbjct: 109 HNRL-QNISCC--PMASLRHLDLSFNDFD-VLPVC-KEFGNLTKLTFLGLSAAKFRQLDL 163

Query: 128 DAFANGSCDLRSLGLNSNKLRGSFPRYLAD--CTGLEVVNVGNNMIGDTFPSWLGSLPGL 185
              A+       L L S  ++G     L     T L +V   N++        + +L  L
Sbjct: 164 LPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHL 223

Query: 186 KILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWI-FVSLETMKNVDEKGS 244
           ++  ++ N          +        +++++           +        + V+    
Sbjct: 224 QLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI 283

Query: 245 DGLYMQGEEDY----YQDSVTVTVKGRDLVLKRIITIFTTI----------DLSSNQFQG 290
             L +    D     Y ++   ++    +  +  +     +           LS +    
Sbjct: 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF 343

Query: 291 EIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKL 336
                     S   LN + N  T S+    + +  L++L L  N L
Sbjct: 344 IHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL 389

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 62.2 bits (151), Expect = 8e-11
 Identities = 49/322 (15%), Positives = 101/322 (31%), Gaps = 58/322 (18%)

Query: 19  KSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIP 78
            +L +L +SN  L                +  T+    L    +T        + F    
Sbjct: 218 NALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF---- 273

Query: 79  PSIYSLSSLEYISLSHNNLSGTIPPCLGNFST----QLTILHLNNNYLQGRIPDAFANGS 134
                   +EY+++ +  ++  I      +S      L I H+ N          ++  +
Sbjct: 274 ----WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFA 329

Query: 135 CDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNR 194
            ++    L+ +             +    +N   N+  D+      +L  L+ L+L+ N 
Sbjct: 330 -EMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG 388

Query: 195 FYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEED 254
                    +     +L  +D+S N              E++                  
Sbjct: 389 LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI------------------ 430

Query: 255 YYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTG 314
                                     ++LSSN   G + + L     + VL+L +N +  
Sbjct: 431 ------------------------LVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM- 463

Query: 315 SIPVSFANMIVLESLDLSSNKL 336
           SIP    ++  L+ L+++SN+L
Sbjct: 464 SIPKDVTHLQALQELNVASNQL 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 56.4 bits (136), Expect = 7e-09
 Identities = 37/180 (20%), Positives = 71/180 (39%), Gaps = 26/180 (14%)

Query: 19  KSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFG 75
            S T+L+ + N  T          K +  L LQ N ++           A +  N     
Sbjct: 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN---FFKV---ALMTKN----- 401

Query: 76  QIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSC 135
                   +SSLE + +S N+L+         ++  + +L+L++N L       F     
Sbjct: 402 --------MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT---GSVFRCLPP 450

Query: 136 DLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRF 195
            ++ L L++N++  S P+ +     L+ +NV +N +          L  L+ + L  N +
Sbjct: 451 KVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 44/285 (15%), Positives = 98/285 (34%), Gaps = 35/285 (12%)

Query: 71  NKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFS--TQLTILHLNNNYLQGRIPD 128
           N+    +P  +      + +SLS N++S  +     + S  ++L +L L++N ++     
Sbjct: 40  NRNLTHVPKDL--PPRTKALSLSQNSIS-ELRM--PDISFLSELRVLRLSHNRIRSLDFH 94

Query: 129 AFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFP--SWLGSLPGLK 186
            F     DL  L ++ N+L+ +          L  +++  N   D  P     G+L  L 
Sbjct: 95  VFLFNQ-DLEYLDVSHNRLQ-NISCCPM--ASLRHLDLSFNDF-DVLPVCKEFGNLTKLT 149

Query: 187 ILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDG 246
            L L + +F          L    +  + LS           + +    +K  + +    
Sbjct: 150 FLGLSAAKFR--------QLDLLPVAHLHLSCI--------LLDLVSYHIKGGETESLQI 193

Query: 247 LYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLN 306
                    +  +   +V+    V        + I L+    Q  +  +    +   +LN
Sbjct: 194 PNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLN 253

Query: 307 LSHNGLTGSIP-----VSFANMIVLESLDLSSNKLHGRIPEQFVD 346
           ++   +  +         F     +E L++ +  +  RI  +   
Sbjct: 254 VTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFT 298

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 70.8 bits (174), Expect = 4e-14
 Identities = 38/205 (18%), Positives = 70/205 (34%), Gaps = 17/205 (8%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNN---TIQG 54
           LS N +R  +       +  L  LD+S   +  IE        +++ L L  N   ++  
Sbjct: 35  LSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 93

Query: 55  TILVPPPSTRAFLFSNNKLFGQIPPSIYS-LSSLEYISLSHNNLSGTIPPCLGNFS--TQ 111
                  S +  +     L   +       L +L+ ++++HN +     P    FS  T 
Sbjct: 94  GAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLP--EYFSNLTN 150

Query: 112 LTILHLNNNYLQGRIPDAFA---NGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGN 168
           L  L L++N +Q                  SL L+ N +             L+ + +  
Sbjct: 151 LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDT 209

Query: 169 NMIGDTFPSWLGSLPGLKILVLRSN 193
           N +          L  L+ + L +N
Sbjct: 210 NQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 62.7 bits (153), Expect = 2e-11
 Identities = 56/280 (20%), Positives = 81/280 (28%), Gaps = 77/280 (27%)

Query: 60  PPSTRAFLFSNNKLFGQIPPSI-YSLSSLEYISLSHNNLSGTIPPCLGNFS--TQLTILH 116
           P ST+    S N L   +     +S   L+ + LS   +  TI    G +   + L+ L 
Sbjct: 27  PFSTKNLDLSFNPL-RHLGSYSFFSFPELQVLDLSRCEIQ-TIED--GAYQSLSHLSTLI 82

Query: 117 LNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFP 176
           L  N +Q     AF+ G   L+ L      L  S   +                      
Sbjct: 83  LTGNPIQSLALGAFS-GLSSLQKLVAVETNLA-SLENFPIG------------------- 121

Query: 177 SWLGSLPGLKILVLRSNRF-YGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLET 235
                L  LK L +  N      L E    L    L  +DLS N+    +       L  
Sbjct: 122 ----HLKTLKELNVAHNLIQSFKLPEYFSNLT--NLEHLDLSSNKIQ-SIYCTDLRVLHQ 174

Query: 236 MKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQV 295
           M                                        +  ++DLS N     I   
Sbjct: 175 MP--------------------------------------LLNLSLDLSLNPMN-FIQPG 195

Query: 296 LGDFKSLIVLNLSHNGLTGSIPV-SFANMIVLESLDLSSN 334
                 L  L L  N L  S+P   F  +  L+ + L +N
Sbjct: 196 AFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 62.7 bits (153), Expect = 2e-11
 Identities = 44/231 (19%), Positives = 83/231 (35%), Gaps = 39/231 (16%)

Query: 20  SLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQ 76
           S   LD+S N L  +       +  + VL+L    IQ                       
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ----------------------T 66

Query: 77  IPPSIYS-LSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSC 135
           I    Y  LS L  + L+ N +  ++     +  + L  L      L   + +       
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLK 124

Query: 136 DLRSLGLNSNKLRG-SFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNR 194
            L+ L +  N ++    P Y ++ T LE +++ +N I   + + L  L  + +L L  + 
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184

Query: 195 FYGPLCEVNIMLPFEA-----LRIIDLSHNEFTGFLPRWIFVSLETMKNVD 240
              P+      +   A     L+ + L  N+    +P  IF  L +++ + 
Sbjct: 185 SLNPM----NFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIW 230

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 46.5 bits (111), Expect = 5e-06
 Identities = 46/269 (17%), Positives = 82/269 (30%), Gaps = 87/269 (32%)

Query: 77  IPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFS--TQLTILHLNNNYLQGRIPDAFANGS 134
           IP ++    S + + LS N L   +     +F    +L +L L+   +Q  I D      
Sbjct: 22  IPDNL--PFSTKNLDLSFNPLR-HLGS--YSFFSFPELQVLDLSRCEIQ-TIEDGAYQSL 75

Query: 135 CDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNR 194
             L +L L  N ++       +  + L+ +                      +  L +  
Sbjct: 76  SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET----------------NLASLENFP 119

Query: 195 FYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEED 254
                         + L+ ++++HN    F     F +L  +                  
Sbjct: 120 IGHL----------KTLKELNVAHNLIQSFKLPEYFSNLTNL------------------ 151

Query: 255 YYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSL-------IVLNL 307
                                     +DLSSN+ Q  I     D + L       + L+L
Sbjct: 152 ------------------------EHLDLSSNKIQ-SIYC--TDLRVLHQMPLLNLSLDL 184

Query: 308 SHNGLTGSIPVSFANMIVLESLDLSSNKL 336
           S N +   I       I L+ L L +N+L
Sbjct: 185 SLNPMN-FIQPGAFKEIRLKELALDTNQL 212

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 71.7 bits (175), Expect = 7e-14
 Identities = 45/208 (21%), Positives = 80/208 (38%), Gaps = 17/208 (8%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPW-KNITVLNLQNNTIQG-TILV 58
           L    +   +++++     S+  +  +N+ +  ++   +  N+T L L  N +     L 
Sbjct: 28  LKKKSVTDAVTQNE---LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLT 84

Query: 59  PPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLN 118
              +        NK+   +   +  L  L+ +SL HN +S  I   L +   QL  L+L 
Sbjct: 85  NLKNLGWLFLDENKI-KDLSS-LKDLKKLKSLSLEHNGIS-DING-LVHL-PQLESLYLG 139

Query: 119 NNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSW 178
           NN +        +  +  L +L L  N++    P  LA  T L+ + +  N I D     
Sbjct: 140 NNKIT--DITVLSRLTK-LDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA-- 192

Query: 179 LGSLPGLKILVLRSNRFYGPLCEVNIML 206
           L  L  L +L L S             L
Sbjct: 193 LAGLKNLDVLELFSQECLNKPINHQSNL 220

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 66.3 bits (161), Expect = 5e-12
 Identities = 59/298 (19%), Positives = 116/298 (38%), Gaps = 23/298 (7%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIE-QHPWKNITVLNLQNNTIQG-TILV 58
             +  I+ +I   D+  +      ++    +T    Q+   +I  +   N+ I+    + 
Sbjct: 6   TVSTPIK-QIFPDDA--FAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQ 62

Query: 59  PPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLN 118
             P+      + NKL   I P + +L +L ++ L  N +   +   L +   +L  L L 
Sbjct: 63  YLPNVTKLFLNGNKL-TDIKP-LTNLKNLGWLFLDENKIK-DLSS-LKDL-KKLKSLSLE 117

Query: 119 NNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSW 178
           +N +     +   +    L SL L +NK+  +    L+  T L+ +++ +N I D  P  
Sbjct: 118 HNGI--SDINGLVH-LPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISDIVP-- 170

Query: 179 LGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWI--FVSLETM 236
           L  L  L+ L L  N     + ++  +   + L +++L   E            V   T+
Sbjct: 171 LAGLTKLQNLYLSKNH----ISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 226

Query: 237 KNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQ 294
           KN D        +  + DY + +V   +      +  I     TI  +  +F G + Q
Sbjct: 227 KNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQ 284

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 59.0 bits (142), Expect = 9e-10
 Identities = 49/273 (17%), Positives = 93/273 (34%), Gaps = 44/273 (16%)

Query: 67  LFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRI 126
             + +    QI P   + +     +L   +++  +          +  +  NN+ ++  +
Sbjct: 4   TITVSTPIKQIFP-DDAFAETIKDNLKKKSVTDAVT--QNEL-NSIDQIIANNSDIK-SV 58

Query: 127 P--DAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPG 184
                  N    +  L LN NKL    P  L +   L  + +  N I D     L  L  
Sbjct: 59  QGIQYLPN----VTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSS--LKDLKK 110

Query: 185 LKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGS 244
           LK L L  N     + ++N ++    L  + L +N+ T          L  +  +D    
Sbjct: 111 LKSLSLEHNG----ISDINGLVHLPQLESLYLGNNKITDITV------LSRLTKLDT--- 157

Query: 245 DGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIV 304
             L ++              +  D+V    +T    + LS N    ++   L   K+L V
Sbjct: 158 --LSLED------------NQISDIVPLAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDV 201

Query: 305 LNLSHNGLTGSIPVSFANMIVLESLDLSSNKLH 337
           L L             +N++V  ++  +   L 
Sbjct: 202 LELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 234

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 43.6 bits (102), Expect = 7e-05
 Identities = 33/226 (14%), Positives = 67/226 (29%), Gaps = 62/226 (27%)

Query: 112 LTILHLNNNYLQGRIPDA-FANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNM 170
           +      +  ++   PD  FA          L    +  +      +   ++ +   N+ 
Sbjct: 1   MGETITVSTPIKQIFPDDAFAE----TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSD 54

Query: 171 IGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIF 230
           I       +  LP +  L L  N+    L ++  +   + L  + L  N+          
Sbjct: 55  IKSVQG--IQYLPNVTKLFLNGNK----LTDIKPLTNLKNLGWLFLDENKIK------DL 102

Query: 231 VSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQG 290
            SL+ +K +                                        ++ L  N    
Sbjct: 103 SSLKDLKKL---------------------------------------KSLSLEHNGIS- 122

Query: 291 EIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKL 336
           +I   L     L  L L +N +T  I    + +  L++L L  N++
Sbjct: 123 DI-NGLVHLPQLESLYLGNNKIT-DIT-VLSRLTKLDTLSLEDNQI 165

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 71.0 bits (174), Expect = 7e-14
 Identities = 42/229 (18%), Positives = 74/229 (32%), Gaps = 19/229 (8%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNN-FLTQIEQHPWKNIT---VLNLQNN----TI 52
               ++R  I K     +  L  ++IS N  L  IE   + N+     + ++       I
Sbjct: 37  FVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI 95

Query: 53  QGTILVPPPSTRAFLFSNNKLFGQIPPSIY-SLSSLEYISLSHNNLSGTIPP-CLGNFST 110
                   P+ +  L SN  +   +P            + +  N    TI        S 
Sbjct: 96  NPEAFQNLPNLQYLLISNTGI-KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSF 154

Query: 111 QLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNM 170
           +  IL LN N +Q     AF NG+        ++N L           +G  ++++    
Sbjct: 155 ESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR 213

Query: 171 IGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHN 219
           I       L +L  L+     + +    L          AL    L++ 
Sbjct: 214 IHSLPSYGLENLKKLRARSTYNLKKLPTL------EKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 71.0 bits (174), Expect = 7e-14
 Identities = 33/192 (17%), Positives = 63/192 (32%), Gaps = 22/192 (11%)

Query: 19  KSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGTILVPPPSTRAF--------- 66
           ++   L      L  I++     + ++  + +  N +   I         F         
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI-----EADVFSNLPKLHEI 84

Query: 67  -LFSNNKLFGQIPPSI-YSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQG 124
            +   N L   I P    +L +L+Y+ +S+  +   +P      S Q  +L + +N    
Sbjct: 85  RIEKANNLL-YINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIH 142

Query: 125 RIPD-AFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLP 183
            I   +F   S +   L LN N ++             E+    NN + +          
Sbjct: 143 TIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGAS 202

Query: 184 GLKILVLRSNRF 195
           G  IL +   R 
Sbjct: 203 GPVILDISRTRI 214

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 50.6 bits (121), Expect = 3e-07
 Identities = 43/280 (15%), Positives = 73/280 (26%), Gaps = 78/280 (27%)

Query: 62  STRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFS--TQLTILHLNN 119
           S R FL   +K+  +IP  +    +   +      L   I    G FS    L  + ++ 
Sbjct: 10  SNRVFLCQESKV-TEIPSDL--PRNAIELRFVLTKLR-VIQK--GAFSGFGDLEKIEISQ 63

Query: 120 NYLQGRIP-DAFANGSCDLRSLGL-NSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPS 177
           N +   I  D F+N    L  + +  +N L    P    +   L+ + + N         
Sbjct: 64  NDVLEVIEADVFSNLP-KLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT-------- 114

Query: 178 WLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMK 237
                    I  L        L             ++D+  N     + R  FV L    
Sbjct: 115 --------GIKHLPDVHKIHSL----------QKVLLDIQDNINIHTIERNSFVGLSFES 156

Query: 238 NVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLG 297
                                                      + L+ N  Q        
Sbjct: 157 -----------------------------------------VILWLNKNGIQEIHNSAFN 175

Query: 298 DFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLH 337
             +   +    +N L       F        LD+S  ++H
Sbjct: 176 GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 40.6 bits (95), Expect = 6e-04
 Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 3/63 (4%)

Query: 279 TTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHG 338
                  ++   EIP  L   ++ I L      L      +F+    LE +++S N +  
Sbjct: 12  RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 68

Query: 339 RIP 341
            I 
Sbjct: 69  VIE 71

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 67.6 bits (165), Expect = 9e-13
 Identities = 33/156 (21%), Positives = 61/156 (39%), Gaps = 33/156 (21%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPW---KNITVLNLQNNTIQGTIL 57
           LS+N +    ++    R  +L  L +S+N L  I    +    N+  L+L +N +     
Sbjct: 46  LSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH---- 101

Query: 58  VPPPSTRAFLFSNNKLFGQIPPSI-YSLSSLEYISLSHNNLSGTIPPCLGNFS--TQLTI 114
                              +   +   L +LE + L +N++   +      F    QL  
Sbjct: 102 ------------------TLDEFLFSDLQALEVLLLYNNHIV-VVDR--NAFEDMAQLQK 140

Query: 115 LHLNNNYLQGRIPDAFANGSC--DLRSLGLNSNKLR 148
           L+L+ N +     +   +G+    L  L L+SNKL+
Sbjct: 141 LYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 46.4 bits (110), Expect = 7e-06
 Identities = 27/158 (17%), Positives = 53/158 (33%), Gaps = 31/158 (19%)

Query: 93  SHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKL----R 148
           S   L   +P    +  +   +L L++N L     +       +L SL L+ N L     
Sbjct: 26  SKQQLP-NVPQ---SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISS 81

Query: 149 GSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNR--------FYGPLC 200
            +F         L  +++ +N +          L  L++L+L +N         F     
Sbjct: 82  EAF----VPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFED--- 134

Query: 201 EVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKN 238
                +    L+ + LS N+ +   P  +      +  
Sbjct: 135 -----MAQ--LQKLYLSQNQIS-RFPVELIKDGNKLPK 164

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 4/85 (4%)

Query: 279 TTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPV-SFANMIVLESLDLSSNKLH 337
             +DLSSN        +  D ++L VL L +N +   +   +F +M  L+ L LS N++ 
Sbjct: 91  RYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS 149

Query: 338 GRIPEQ-FVDAEICSSFARPDLYTN 361
            R P +   D          DL +N
Sbjct: 150 -RFPVELIKDGNKLPKLMLLDLSSN 173

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 40.6 bits (95), Expect = 5e-04
 Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 6/68 (8%)

Query: 279 TTIDLSSNQFQGEIP--QVLGDFKSLIVLNLSHNGLTGSIPV-SFANMIVLESLDLSSNK 335
             +DLS N     +          +L  L LSHN L   I   +F  +  L  LDLSSN 
Sbjct: 42  ALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNH 99

Query: 336 LHGRIPEQ 343
           LH  + E 
Sbjct: 100 LH-TLDEF 106

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 67.4 bits (165), Expect = 1e-12
 Identities = 52/354 (14%), Positives = 101/354 (28%), Gaps = 113/354 (31%)

Query: 19  KSLTYLDISNNFLTQIE--------QHPWKNITVLNLQNNTIQGTILVPPPSTRAF---L 67
             +T LD+S N L  I          +   ++T LNL  N++         ++      L
Sbjct: 22  HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLG------FKNSDELVQIL 75

Query: 68  FSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGT----IPPCLGNFSTQLTILHLNNNYLQ 123
            +               +++  ++LS N LS      +   L      +T+L L  N   
Sbjct: 76  AAIP-------------ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFS 122

Query: 124 GR----IPDAFANGSCDLRSLGLNSNKLRGSFPRYLADC-----TGLEVVNVGNNMIGDT 174
            +       AF+N    + SL L  N L       L          +  +N+  N +   
Sbjct: 123 SKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASK 182

Query: 175 FPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLE 234
             + L                   L  +       ++  +DLS N               
Sbjct: 183 NCAELAKF----------------LASIP-----ASVTSLDLSANLL------------- 208

Query: 235 TMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGE--- 291
                   G                          +   I     +++L  N   G    
Sbjct: 209 --------GLKSYAELAY-----------------IFSSIPNHVVSLNLCLNCLHGPSLE 243

Query: 292 -IPQVLGDFKSLIVLNLSHNGLTG-------SIPVSFANMIVLESLDLSSNKLH 337
            +  +    K L  + L ++ +         ++  +F N+  +  +D +  ++H
Sbjct: 244 NLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 66.1 bits (162), Expect = 4e-12
 Identities = 56/352 (15%), Positives = 103/352 (29%), Gaps = 63/352 (17%)

Query: 19  KSLTYLDISNNFLT----QIEQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLF 74
             +  LDI    L+           +   V+ L +  +           +          
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLT------EARCKDISS------ 50

Query: 75  GQIPPSIYSLSSLEYISLSHNNLSG----TIPPCLGNFSTQLTILHLNNNYLQGR----I 126
                ++    +L  ++L  N L       +   L   S ++  L L N  L G     +
Sbjct: 51  -----ALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL 105

Query: 127 PDAFANGSCDLRSLGLNSNKLRGSFPRYLAD-----CTGLEVVNVGNNMIGDT----FPS 177
                     L+ L L+ N L  +  + L +        LE + +    +         S
Sbjct: 106 SSTLRT-LPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS 164

Query: 178 WLGSLPGLKILVLRSNRFYGP----LCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSL 233
            L + P  K L + +N         LC+  +      L  + L     T    R +   +
Sbjct: 165 VLRAKPDFKELTVSNNDINEAGVRVLCQG-LKDSPCQLEALKLESCGVTSDNCRDLCGIV 223

Query: 234 ETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGE-- 291
            +  ++ E     L      D     +     G      R+     T+ +       +  
Sbjct: 224 ASKASLREL---ALGSNKLGD---VGMAELCPGLLHPSSRL----RTLWIWECGITAKGC 273

Query: 292 --IPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMI-----VLESLDLSSNKL 336
             + +VL   +SL  L+L+ N L           +      LESL + S   
Sbjct: 274 GDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF 325

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 65.0 bits (159), Expect = 8e-12
 Identities = 60/360 (16%), Positives = 107/360 (29%), Gaps = 75/360 (20%)

Query: 19  KSLTYLDISNNFLT--------QIEQHPWKNITVLNLQNNTI--QGTILVPPPSTRAFLF 68
            +L  L +S+N L         +    P   +  L L+  ++       +      A + 
Sbjct: 113 PTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL------ASVL 166

Query: 69  SNNKLFGQIPPSIYSLSSLEYISLSHNNLSGT----IPPCLGNFSTQLTILHLNNNYLQG 124
                              + +++S+N+++      +   L +   QL  L L +  +  
Sbjct: 167 RAKP-------------DFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS 213

Query: 125 RIPDAFANG---SCDLRSLGLNSNKLRGSFPRYLAD-----CTGLEVVNVGNNMIGDT-- 174
                          LR L L SNKL       L        + L  + +    I     
Sbjct: 214 DNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGC 273

Query: 175 --FPSWLGSLPGLKILVLRSNRFYGP----LCEVNIMLPFEALRIIDLSHNEFTGFLPRW 228
                 L +   LK L L  N         LCE  ++ P   L  + +    FT      
Sbjct: 274 GDLCRVLRAKESLKELSLAGNELGDEGARLLCET-LLEPGCQLESLWVKSCSFTAACCSH 332

Query: 229 IFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKG-RDL--VLKRIITIFTTIDLSS 285
               L   + + E     L +            +   G R+L   L +  ++   + L+ 
Sbjct: 333 FSSVLAQNRFLLE-----LQISNNR--------LEDAGVRELCQGLGQPGSVLRVLWLAD 379

Query: 286 NQFQGE----IPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMI-----VLESLDLSSNKL 336
                     +   L    SL  L+LS+N L  +  +     +     +LE L L     
Sbjct: 380 CDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 65.0 bits (159), Expect = 1e-11
 Identities = 62/365 (16%), Positives = 111/365 (30%), Gaps = 85/365 (23%)

Query: 19  KSLTYLDISNNF--------LTQIEQHPWKNITVLNLQNNTIQ-------GTILVPPPST 63
            +L  L++ +N         + Q  Q P   I  L+LQN  +         + L   P+ 
Sbjct: 56  PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTL 115

Query: 64  RAFLFSNNKLFGQIPPSIYSL-----SSLEYISLSHNNLSGTIPPCLGN---FSTQLTIL 115
           +    S+N L       +          LE + L + +LS      L +          L
Sbjct: 116 QELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKEL 175

Query: 116 HLNNNYLQGR----IPDAFANGSCDLRSLGLNSNKLR----GSFPRYLADCTGLEVVNVG 167
            ++NN +       +     +  C L +L L S  +           +A    L  + +G
Sbjct: 176 TVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALG 235

Query: 168 NNMIGDT-----FPSWLGSLPGLKILVLRSNRFYGPLCEV--NIMLPFEALRIIDLSHNE 220
           +N +GD       P  L     L+ L +         C     ++   E+L+ + L+ NE
Sbjct: 236 SNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE 295

Query: 221 FTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTT 280
                                 G +G                  +     L        +
Sbjct: 296 L---------------------GDEG-----------------ARLLCETLLEPGCQLES 317

Query: 281 IDLSSNQFQGE----IPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMI-----VLESLDL 331
           + + S  F          VL   + L+ L +S+N L  +        +     VL  L L
Sbjct: 318 LWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWL 377

Query: 332 SSNKL 336
           +   +
Sbjct: 378 ADCDV 382

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 45/278 (16%), Positives = 80/278 (28%), Gaps = 65/278 (23%)

Query: 85  SSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANG---SCDLRSLG 141
             ++ + +    LS      L     Q  ++ L++  L        ++    +  L  L 
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 142 LNSNKLRGSFPRYLADC-----TGLEVVNVGNNMIGDT----FPSWLGSLPGLKILVLRS 192
           L SN+L       +          ++ +++ N  +         S L +LP L+ L L  
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 193 NRFYGP----LCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLY 248
           N         LCE  ++ P   L  + L +   +      +   L    +          
Sbjct: 123 NLLGDAGLQLLCEG-LLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDF--------- 172

Query: 249 MQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGE----IPQVLGDFK-SLI 303
                                           + +S+N         + Q L D    L 
Sbjct: 173 ------------------------------KELTVSNNDINEAGVRVLCQGLKDSPCQLE 202

Query: 304 VLNLSHNGLTGSIPVSFANMI----VLESLDLSSNKLH 337
            L L   G+T         ++     L  L L SNKL 
Sbjct: 203 ALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 39/236 (16%), Positives = 68/236 (28%), Gaps = 54/236 (22%)

Query: 19  KSLTYLDISNN--------FLTQIEQHPWKNITVLNLQNNTIQ-------GTILVPPPST 63
            SL  L + +N         L     HP   +  L +    I          +L    S 
Sbjct: 227 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESL 286

Query: 64  RAFLFSNNKLFGQIPPSI-----YSLSSLEYISLSHNNLSGT----IPPCLGNFSTQLTI 114
           +    + N+L  +    +          LE + +   + +          L   +  L  
Sbjct: 287 KELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQ-NRFLLE 345

Query: 115 LHLNNNYLQG----RIPDAFANGSCDLRSLGLNSNKLRGSFPRYLAD----CTGLEVVNV 166
           L ++NN L+      +          LR L L    +  S    LA        L  +++
Sbjct: 346 LQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDL 405

Query: 167 GNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFT 222
            NN +GD          G+             L E  +  P   L  + L    ++
Sbjct: 406 SNNCLGDA---------GILQ-----------LVES-VRQPGCLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 34/229 (14%), Positives = 71/229 (31%), Gaps = 43/229 (18%)

Query: 1   LSNNRIRGR----ISKSDSQRWKSLTYLDISNNFLTQ---------IEQHPWKNITVLNL 47
           L +N++       +          L  L I    +T          +     +++  L+L
Sbjct: 234 LGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAK--ESLKELSL 291

Query: 48  QNNTIQGT--------ILVPPPSTRAFLFSNNKL----FGQIPPSIYSLSSLEYISLSHN 95
             N +           +L P     +    +              +     L  + +S+N
Sbjct: 292 AGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN 351

Query: 96  NLSGT----IPPCLGNFSTQLTILHLNNNYLQGRIPDAFANG---SCDLRSLGLNSNKLR 148
            L       +   LG   + L +L L +  +      + A     +  LR L L++N L 
Sbjct: 352 RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411

Query: 149 GSFPRYLAD-----CTGLEVVNVGNNMIGDTFPSWLGSL----PGLKIL 188
            +    L +        LE + + +    +     L +L    P L+++
Sbjct: 412 DAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 460

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 65.1 bits (159), Expect = 7e-12
 Identities = 48/367 (13%), Positives = 98/367 (26%), Gaps = 104/367 (28%)

Query: 19  KSLTYLDISNNFLTQIEQHPW-------KNITVLNLQNNTI--QGTILVPPPSTRAFLFS 69
            S+    +  + +T  ++           ++  + L  NTI  +    +      +   +
Sbjct: 4   FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWL------SENIA 57

Query: 70  NNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFS------TQLTILHLNNNYLQ 123
           + K           L   E+  +    +   IP  L           +L  + L++N   
Sbjct: 58  SKK----------DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107

Query: 124 GRIPDAFANG---SCDLRSLGLNSNKL-------------RGSFPRYLADCTGLEVVNVG 167
               +   +       L  L L++N L               +  +   +   L  +  G
Sbjct: 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICG 167

Query: 168 NNMIGD----TFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEA---LRIIDLSHNE 220
            N + +     +     S   L  + +  N       E  ++        L+++DL  N 
Sbjct: 168 RNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT 227

Query: 221 FTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTT 280
           FT                    GS  L                       LK    +   
Sbjct: 228 FT------------------HLGSSAL---AI-----------------ALKSWPNL-RE 248

Query: 281 IDLSSNQFQGE----IPQVL--GDFKSLIVLNLSHNGLTGSIPVSFA-----NMIVLESL 329
           + L+           +       +   L  L L +N +      +        M  L  L
Sbjct: 249 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL 308

Query: 330 DLSSNKL 336
           +L+ N+ 
Sbjct: 309 ELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 50.1 bits (120), Expect = 4e-07
 Identities = 41/270 (15%), Positives = 77/270 (28%), Gaps = 47/270 (17%)

Query: 19  KSLTYLDISNNFLTQ---------IEQHPWKNITVLNLQNNTI--QGTILVPPPSTRAFL 67
             L  + +S+N             + +H    +  L L NN +  Q    +      A  
Sbjct: 94  PKLHTVRLSDNAFGPTAQEPLIDFLSKH--TPLEHLYLHNNGLGPQAGAKI------ARA 145

Query: 68  FSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGN---FSTQLTILHLNNNYLQG 124
                +  +   +      L  I    N L                 L  + +  N ++ 
Sbjct: 146 LQELAVNKKAKNA----PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRP 201

Query: 125 R-IPDAFANG---SCDLRSLGLNSNKL--RG--SFPRYLADCTGLEVVNVGNNMIGDTFP 176
             I      G     +L+ L L  N     G  +    L     L  + + + ++     
Sbjct: 202 EGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA 261

Query: 177 SWLGSL------PGLKILVLRSNRFYGP----LCEVNIMLPFEALRIIDLSHNEFT--GF 224
           + +          GL+ L L+ N         L  V I      L  ++L+ N F+    
Sbjct: 262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTV-IDEKMPDLLFLELNGNRFSEEDD 320

Query: 225 LPRWIFVSLETMKNVDEKGSDGLYMQGEED 254
           +   I     T    +    D +    +E+
Sbjct: 321 VVDEIREVFSTRGRGELDELDDMEELTDEE 350

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 31/212 (14%), Positives = 60/212 (28%), Gaps = 62/212 (29%)

Query: 1   LSNNRI------------RGRISKSDSQRWKSLTYLDISNNFLTQ---------IEQHPW 39
           L NN +            +       ++    L  +    N L            + H  
Sbjct: 129 LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH-- 186

Query: 40  KNITVLNLQNNTIQ----GTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHN 95
           + +  + +  N I+      +L           +  +              L+ + L  N
Sbjct: 187 RLLHTVKMVQNGIRPEGIEHLL-------LEGLAYCQ-------------ELKVLDLQDN 226

Query: 96  NLSGT----IPPCLGNFSTQLTILHLNNNYLQGR----IPDAFANGS-CDLRSLGLNSNK 146
             +      +   L +    L  L LN+  L  R    + DAF+      L++L L  N+
Sbjct: 227 TFTHLGSSALAIALKS-WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE 285

Query: 147 LRGSFPRYLAD-----CTGLEVVNVGNNMIGD 173
           +     R L          L  + +  N   +
Sbjct: 286 IELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 32/233 (13%), Positives = 64/233 (27%), Gaps = 35/233 (15%)

Query: 133 GSCDLRSLGLNSNKLRG----SFPRYLADCTGLEVVNVGNNMIGDT----FPSWLGSLPG 184
               +    L  + +      S    L +   ++ + +  N IG          + S   
Sbjct: 2   ARFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKD 61

Query: 185 LKILVLRSNRFYGPLCEVNIMLPFEA--------LRIIDLSHNEFTGFLPRWIFVSLETM 236
           L+I             E+   L            L  + LS N F       +   L   
Sbjct: 62  LEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH 121

Query: 237 KNVDEKGSDGLYMQ----GEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGE- 291
             ++      LY+     G +   + +  +     +   K    +  +I    N+ +   
Sbjct: 122 TPLEH-----LYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPL-RSIICGRNRLENGS 175

Query: 292 ---IPQVLGDFKSLIVLNLSHNGLT-----GSIPVSFANMIVLESLDLSSNKL 336
                +     + L  + +  NG+        +    A    L+ LDL  N  
Sbjct: 176 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF 228

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 62.3 bits (152), Expect = 1e-11
 Identities = 29/159 (18%), Positives = 61/159 (38%), Gaps = 11/159 (6%)

Query: 19  KSLTYLDISNNFLTQIE--QHPWKNITVLNLQNNTIQG-TILVPPPSTRAFLFSNNKLFG 75
            SLTY+ ++N  +T +   ++   NI  L + N        +    +          +  
Sbjct: 44  NSLTYITLANINVTDLTGIEY-AHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTS 102

Query: 76  QIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSC 135
              P++  L+SL  + +SH+    +I   +     ++  + L+ N   G I D     + 
Sbjct: 103 DKIPNLSGLTSLTLLDISHSAHDDSILTKINTL-PKVNSIDLSYN---GAITDIMPLKTL 158

Query: 136 -DLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGD 173
            +L+SL +  + +       + D   L  +   +  IG 
Sbjct: 159 PELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 21/143 (14%), Positives = 59/143 (41%), Gaps = 9/143 (6%)

Query: 84  LSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLN 143
           ++SL YI+L++ N++      +      +  L +NN +      +  +  S +L  L + 
Sbjct: 43  MNSLTYITLANINVTDLTG--IEYA-HNIKDLTINNIHATN--YNPISGLS-NLERLRIM 96

Query: 144 SNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVN 203
              +       L+  T L ++++ ++   D+  + + +LP +  + L  N     +  + 
Sbjct: 97  GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLK 156

Query: 204 IMLPFEALRIIDLSHNEFTGFLP 226
            +     L+ +++  +    +  
Sbjct: 157 TL---PELKSLNIQFDGVHDYRG 176

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.9 bits (107), Expect = 8e-06
 Identities = 13/58 (22%), Positives = 23/58 (39%)

Query: 279 TTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKL 336
             + +       +    L    SL +L++SH+    SI      +  + S+DLS N  
Sbjct: 91  ERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA 148

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 279 TTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKL 336
           T +D+S +     I   +     +  ++LS+NG    I      +  L+SL++  + +
Sbjct: 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGV 171

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 29/200 (14%), Positives = 56/200 (28%), Gaps = 52/200 (26%)

Query: 137 LRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFY 196
           L  + L +  +       +     ++ + + N    +  P  +  L  L+ L +      
Sbjct: 46  LTYITLANINVTDLTG--IEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVT 101

Query: 197 GPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYY 256
                    L   +L ++D+SH+         I   + T+  V                 
Sbjct: 102 SDKIPNLSGLT--SLTLLDISHSAHDD----SILTKINTLPKV----------------- 138

Query: 257 QDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSI 316
                                  +IDLS N    +I   L     L  LN+  +G+    
Sbjct: 139 ----------------------NSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYR 175

Query: 317 PVSFANMIVLESLDLSSNKL 336
            +   +   L  L   S  +
Sbjct: 176 GIE--DFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 9/66 (13%), Positives = 23/66 (34%), Gaps = 2/66 (3%)

Query: 279 TTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHG 338
             + +++       P  +    +L  L +    +T     + + +  L  LD+S +    
Sbjct: 69  KDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126

Query: 339 RIPEQF 344
            I  + 
Sbjct: 127 SILTKI 132

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 39.2 bits (92), Expect = 8e-04
 Identities = 28/206 (13%), Positives = 58/206 (28%), Gaps = 55/206 (26%)

Query: 110 TQLTILHLNNNYLQGRIP-DAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGN 168
             LT + L N  +      +   N    ++ L +N+       P  ++  + LE + +  
Sbjct: 44  NSLTYITLANINVTDLTGIEYAHN----IKDLTINNIHATNYNP--ISGLSNLERLRIMG 97

Query: 169 NMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRW 228
             +       L  L  L +L +  +     +      LP   +  IDLS+N     +   
Sbjct: 98  KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP--KVNSIDLSYNGAITDIM-- 153

Query: 229 IFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQF 288
               L+T+  +                                        ++++  +  
Sbjct: 154 ---PLKTLPEL---------------------------------------KSLNIQFDGV 171

Query: 289 QGEIPQVLGDFKSLIVLNLSHNGLTG 314
                  + DF  L  L      + G
Sbjct: 172 HDYRG--IEDFPKLNQLYAFSQTIGG 195

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 63.6 bits (155), Expect = 1e-11
 Identities = 39/180 (21%), Positives = 63/180 (35%), Gaps = 12/180 (6%)

Query: 20  SLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQ 76
             T L +S N L         P+  +T LNL    +    +         L  ++     
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQS 91

Query: 77  IPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFS--TQLTILHLNNNYLQGRIPDAFANGS 134
           +P    +L +L  + +S N L+ ++P   G      +L  L+L  N L+   P       
Sbjct: 92  LPLLGQTLPALTVLDVSFNRLT-SLPL--GALRGLGELQELYLKGNELKTLPPGLLTPTP 148

Query: 135 CDLRSLGLNSNKLRGSFPRYLADC-TGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSN 193
             L  L L +N L    P  L +    L+ + +  N +  T P        L    L  N
Sbjct: 149 -KLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL-YTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 55.1 bits (133), Expect = 7e-09
 Identities = 34/156 (21%), Positives = 55/156 (35%), Gaps = 23/156 (14%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPWK--NITVLNLQNNTIQGTILV 58
           L    +              L  LD+S+N L  +         +TVL++  N +     +
Sbjct: 62  LDRAELT---KLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS---L 115

Query: 59  PP------PSTRAFLFSNNKLFGQIPPSIY-SLSSLEYISLSHNNLSGTIPPCLGNFS-- 109
           P          +      N+L   +PP +      LE +SL++NNL+  +P   G  +  
Sbjct: 116 PLGALRGLGELQELYLKGNEL-KTLPPGLLTPTPKLEKLSLANNNLT-ELPA--GLLNGL 171

Query: 110 TQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSN 145
             L  L L  N L       F +    L    L+ N
Sbjct: 172 ENLDTLLLQENSLYTIPKGFFGSHL--LPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 53.6 bits (129), Expect = 3e-08
 Identities = 32/176 (18%), Positives = 57/176 (32%), Gaps = 28/176 (15%)

Query: 20  SLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPP 79
           S   ++     LT +     K+ T+L+L  N +                           
Sbjct: 11  SHLEVNCDKRNLTALPPDLPKDTTILHLSENLLY----------------------TFSL 48

Query: 80  SIY-SLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLR 138
           +     + L  ++L    L+  +          L  L L++N LQ  +P         L 
Sbjct: 49  ATLMPYTRLTQLNLDRAELT-KLQV--DGTLPVLGTLDLSHNQLQ-SLPLLGQTLP-ALT 103

Query: 139 SLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNR 194
            L ++ N+L       L     L+ + +  N +    P  L   P L+ L L +N 
Sbjct: 104 VLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 52.8 bits (127), Expect = 5e-08
 Identities = 40/171 (23%), Positives = 61/171 (35%), Gaps = 23/171 (13%)

Query: 69  SNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPD 128
               L   +PP +        + LS N L  T         T+LT L+L+   L  ++  
Sbjct: 18  DKRNL-TALPPDL--PKDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELT-KLQ- 71

Query: 129 AFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKIL 188
                   L +L L+ N+L+ S P        L V++V  N +       L  L  L+ L
Sbjct: 72  VDGTLP-VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129

Query: 189 VLRSNRFYGPLCEVNIMLP---FE---ALRIIDLSHNEFTGFLPRWIFVSL 233
            L+ N            LP         L  + L++N  T  LP  +   L
Sbjct: 130 YLKGNEL--------KTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGL 171

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 48.6 bits (116), Expect = 1e-06
 Identities = 48/260 (18%), Positives = 81/260 (31%), Gaps = 80/260 (30%)

Query: 84  LSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLN 143
           ++S   ++    NL+  +PP   +     TILHL+ N L           +  L  L L+
Sbjct: 9   VASHLEVNCDKRNLT-ALPP---DLPKDTTILHLSENLLYTFSLATLMPYT-RLTQLNLD 63

Query: 144 SNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVN 203
             +L             L  +++ +N +  + P    +LP L +L               
Sbjct: 64  RAELT-KLQVD-GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVL--------------- 105

Query: 204 IMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVT 263
                      D+S N  T  LP      L                              
Sbjct: 106 -----------DVSFNRLT-SLPLGALRGL------------------------------ 123

Query: 264 VKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVS-FAN 322
                            + L  N+ +   P +L     L  L+L++N LT  +P      
Sbjct: 124 ------------GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNG 170

Query: 323 MIVLESLDLSSNKLHGRIPE 342
           +  L++L L  N L+  IP+
Sbjct: 171 LENLDTLLLQENSLY-TIPK 189

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 62.3 bits (152), Expect = 3e-11
 Identities = 42/166 (25%), Positives = 74/166 (44%), Gaps = 16/166 (9%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNN---TIQG 54
           L +N++   +      R   L  L +++N L  +        KN+  L + +N    +  
Sbjct: 44  LQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPI 102

Query: 55  TILVPPPSTRAFLFSNNKLFGQIPPSIY-SLSSLEYISLSHNNLSGTIPPCLGNFS--TQ 111
            +     +        N+L   +PP ++ SL+ L Y+SL +N L  ++P   G F   T 
Sbjct: 103 GVFDQLVNLAELRLDRNQL-KSLPPRVFDSLTKLTYLSLGYNELQ-SLPK--GVFDKLTS 158

Query: 112 LTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLAD 157
           L  L L NN L+     AF   + +L++L L++N+L+   P    D
Sbjct: 159 LKELRLYNNQLKRVPEGAFDKLT-ELKTLKLDNNQLK-RVPEGAFD 202

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 60.0 bits (146), Expect = 1e-10
 Identities = 48/187 (25%), Positives = 80/187 (42%), Gaps = 22/187 (11%)

Query: 20  SLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGTILVPP------PSTRAFLFSN 70
               LD+ +N L+ +     H    + +L L +N +Q    +P        +      ++
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT---LPAGIFKELKNLETLWVTD 94

Query: 71  NKLFGQIPPSIY-SLSSLEYISLSHNNLSGTIPPCLGNFS--TQLTILHLNNNYLQGRIP 127
           NKL   +P  ++  L +L  + L  N L  ++PP    F   T+LT L L  N LQ  +P
Sbjct: 95  NKL-QALPIGVFDQLVNLAELRLDRNQLK-SLPP--RVFDSLTKLTYLSLGYNELQ-SLP 149

Query: 128 D-AFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLK 186
              F   +  L+ L L +N+L+          T L+ + + NN +         SL  LK
Sbjct: 150 KGVFDKLT-SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLK 208

Query: 187 ILVLRSN 193
           +L L+ N
Sbjct: 209 MLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.0 bits (102), Expect = 7e-05
 Identities = 55/266 (20%), Positives = 85/266 (31%), Gaps = 89/266 (33%)

Query: 77  IPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFS--TQLTILHLNNNYLQGRIPDAFANGS 134
           IP +I   +  + + L  N LS ++P     F   T+L +L+LN+N LQ      F    
Sbjct: 31  IPSNI--PADTKKLDLQSNKLS-SLPS--KAFHRLTKLRLLYLNDNKLQTLPAGIF-KEL 84

Query: 135 CDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNR 194
            +L +L +  NKL+ + P  + D                        L  L  L L  N+
Sbjct: 85  KNLETLWVTDNKLQ-ALPIGVFD-----------------------QLVNLAELRLDRNQ 120

Query: 195 FYGPLCEVNIMLP---FE---ALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLY 248
                      LP   F+    L  + L +NE    LP+ +F  L               
Sbjct: 121 L--------KSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKL--------------- 156

Query: 249 MQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLS 308
                                      T    + L +NQ +            L  L L 
Sbjct: 157 ---------------------------TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLD 189

Query: 309 HNGLTGSIPVSFANMIVLESLDLSSN 334
           +N L      +F ++  L+ L L  N
Sbjct: 190 NNQLKRVPEGAFDSLEKLKMLQLQEN 215

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 61.2 bits (149), Expect = 8e-11
 Identities = 48/225 (21%), Positives = 93/225 (41%), Gaps = 23/225 (10%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ-HPWKNITVLNLQNNTIQG-TILV 58
              + +   ++++D      +T L      +T IE      N+  L L++N I     L 
Sbjct: 26  AGKSNVTDTVTQADL---DGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLK 82

Query: 59  PPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLN 118
                     S N L  +   +I  L S++ + L+   ++   P  L    + L +L+L+
Sbjct: 83  NLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVTP--LAGL-SNLQVLYLD 137

Query: 119 NNYLQGRIPDAFANGSCD-LRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPS 177
            N    +I +         L+ L + + ++    P  LA+ + L  +   +N I D  P 
Sbjct: 138 LN----QITNISPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP- 190

Query: 178 WLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFT 222
            L SLP L  + L++N+    + +V+ +     L I+ L++   T
Sbjct: 191 -LASLPNLIEVHLKNNQ----ISDVSPLANTSNLFIVTLTNQTIT 230

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 55.1 bits (133), Expect = 1e-08
 Identities = 52/319 (16%), Positives = 105/319 (32%), Gaps = 85/319 (26%)

Query: 19  KSLTYLDISNNFLTQIE-QHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQI 77
            +   +    + +T    Q     IT L+     +                        I
Sbjct: 19  ANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVT----------------------TI 56

Query: 78  PPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDL 137
              +  L++L  + L  N ++  + P L N  T++T L L+ N L  +   A A     +
Sbjct: 57  EG-VQYLNNLIGLELKDNQIT-DLAP-LKNL-TKITELELSGNPL--KNVSAIAGLQ-SI 109

Query: 138 RSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYG 197
           ++L L S ++    P  LA  + L+V+ +  N I +  P  L  L  L+ L + + +   
Sbjct: 110 KTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQ--- 162

Query: 198 PLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQ 257
            + ++  +     L  +    N+ +   P      L ++ N+                  
Sbjct: 163 -VSDLTPLANLSKLTTLKADDNKISDISP------LASLPNL------------------ 197

Query: 258 DSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIP 317
                                  + L +NQ     P  L +  +L ++ L++  +T    
Sbjct: 198 ---------------------IEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPV 234

Query: 318 VSFANMIVLESLDLSSNKL 336
               N++V   +   S   
Sbjct: 235 FYNNNLVVPNVVKGPSGAP 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 49.7 bits (119), Expect = 5e-07
 Identities = 38/255 (14%), Positives = 82/255 (32%), Gaps = 65/255 (25%)

Query: 83  SLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSC-DLRSLG 141
           +L++   I+   +N++ T+     +    +T L          +          +L  L 
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADL-DGITTLSAFGT----GVTTIEGVQYLNNLIGLE 69

Query: 142 LNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCE 201
           L  N++    P  L + T +  + +  N + +     +  L  +K L L S +    + +
Sbjct: 70  LKDNQITDLAP--LKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQ----ITD 121

Query: 202 VNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVT 261
           V  +     L+++ L  N+ T   P      L  + N+                      
Sbjct: 122 VTPLAGLSNLQVLYLDLNQITNISP------LAGLTNL---------------------- 153

Query: 262 VTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFA 321
                              + + + Q     P  L +   L  L    N ++  I    A
Sbjct: 154 -----------------QYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS-DIS-PLA 192

Query: 322 NMIVLESLDLSSNKL 336
           ++  L  + L +N++
Sbjct: 193 SLPNLIEVHLKNNQI 207

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 38/246 (15%), Positives = 75/246 (30%), Gaps = 62/246 (25%)

Query: 91  SLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGS 150
           S++       I P           +    + +   +  A  +G   + +L      +   
Sbjct: 2   SITQPTAINVIFP-DPAL-ANAIKIAAGKSNVTDTVTQADLDG---ITTLSAFGTGVTTI 56

Query: 151 FPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEA 210
               +     L  + + +N I D  P  L +L  +  L L  N     L  V+ +   ++
Sbjct: 57  EG--VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNP----LKNVSAIAGLQS 108

Query: 211 LRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLV 270
           ++ +DL+  + T   P      L  + N+                               
Sbjct: 109 IKTLDLTSTQITDVTP------LAGLSNL------------------------------- 131

Query: 271 LKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLD 330
                     + L  NQ    I   L    +L  L++ +  ++   P   AN+  L +L 
Sbjct: 132 --------QVLYLDLNQIT-NIS-PLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLK 179

Query: 331 LSSNKL 336
              NK+
Sbjct: 180 ADDNKI 185

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 60.5 bits (147), Expect = 1e-10
 Identities = 44/196 (22%), Positives = 78/196 (39%), Gaps = 17/196 (8%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ-HPWKNITVLNLQNNTIQG-TILV 58
           L    +   +++++     S+  +  +N+ +  ++      N+T L L  N +     L 
Sbjct: 31  LKKKSVTDAVTQNE---LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLA 87

Query: 59  PPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLN 118
              +        NK+   +   +  L  L+ +SL HN +S  I   L +   QL  L+L 
Sbjct: 88  NLKNLGWLFLDENKV-KDLSS-LKDLKKLKSLSLEHNGIS-DING-LVHL-PQLESLYLG 142

Query: 119 NNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSW 178
           NN +        +  +  L +L L  N++    P  LA  T L+ + +  N I D     
Sbjct: 143 NNKIT--DITVLSRLTK-LDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA-- 195

Query: 179 LGSLPGLKILVLRSNR 194
           L  L  L +L L S  
Sbjct: 196 LAGLKNLDVLELFSQE 211

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 55.1 bits (133), Expect = 8e-09
 Identities = 42/208 (20%), Positives = 85/208 (40%), Gaps = 18/208 (8%)

Query: 17  RWKSLTYLDISNNFLTQIE-QHPWKNITVLNLQNNTIQG-TILVPPPSTRAFLFSNNKLF 74
            +      ++    +T    Q+   +I  +   N+ I+    +   P+      + NKL 
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKL- 80

Query: 75  GQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGS 134
             I P + +L +L ++ L  N +   +   L +   +L  L L +N +     +   +  
Sbjct: 81  TDIKP-LANLKNLGWLFLDENKVK-DLSS-LKDL-KKLKSLSLEHNGI--SDINGLVHLP 134

Query: 135 CDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNR 194
             L SL L +NK+  +    L+  T L+ +++ +N I D  P  L  L  L+ L L  N 
Sbjct: 135 -QLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 189

Query: 195 FYGPLCEVNIMLPFEALRIIDLSHNEFT 222
               + ++  +   + L +++L   E  
Sbjct: 190 ----ISDLRALAGLKNLDVLELFSQECL 213

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 48/277 (17%), Positives = 85/277 (30%), Gaps = 67/277 (24%)

Query: 61  PSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNN 120
           P     +     +  QI     + +     +L   +++  +          +  +  NN+
Sbjct: 2   PLGSETITVPTPI-KQIFS-DDAFAETIKDNLKKKSVTDAVT--QNEL-NSIDQIIANNS 56

Query: 121 YLQGRIPDAFANGSCD-LRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWL 179
                I           +  L LN NKL    P  LA+   L  + +  N + D     L
Sbjct: 57  ----DIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS--L 108

Query: 180 GSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNV 239
             L  LK L L  N     + ++N ++    L  + L +N+ T          L  +  +
Sbjct: 109 KDLKKLKSLSLEHNG----ISDINGLVHLPQLESLYLGNNKITDITV------LSRLTKL 158

Query: 240 DEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDF 299
                                                   T+ L  NQ   +I   L   
Sbjct: 159 ---------------------------------------DTLSLEDNQIS-DIVP-LAGL 177

Query: 300 KSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKL 336
             L  L LS N ++  +  + A +  L+ L+L S + 
Sbjct: 178 TKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFSQEC 212

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 61.3 bits (148), Expect = 1e-10
 Identities = 43/206 (20%), Positives = 80/206 (38%), Gaps = 19/206 (9%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQG----TI 56
           LS  +    + +S+ +  K L  L+  N +         + +  L  +  T+Q       
Sbjct: 356 LSVEKST--VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 413

Query: 57  LVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILH 116
           + P  +       +  L  +        + +  + L+H +L  T+   L      +T L 
Sbjct: 414 VDPMRAAYLDDLRSKFLL-ENSVLKMEYADVRVLHLAHKDL--TVLCHLEQL-LLVTHLD 469

Query: 117 LNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGD-TF 175
           L++N L+  +P A A   C L  L  + N L  +    +A+   L+ + + NN +     
Sbjct: 470 LSHNRLR-ALPPALAALRC-LEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQQSAA 525

Query: 176 PSWLGSLPGLKILVLRSNRFYGPLCE 201
              L S P L +L L+ N     LC+
Sbjct: 526 IQPLVSCPRLVLLNLQGN----SLCQ 547

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 55.1 bits (132), Expect = 2e-08
 Identities = 32/185 (17%), Positives = 65/185 (35%), Gaps = 32/185 (17%)

Query: 9   RISKSDSQRWKSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLF 68
            +   D  R   L  L         + +  + ++ VL+L +  +                
Sbjct: 410 TLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL---------------- 453

Query: 69  SNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPD 128
                   +   +  L  + ++ LSHN L   +PP L      L +L  ++N L+  +  
Sbjct: 454 -------TVLCHLEQLLLVTHLDLSHNRLR-ALPPALAAL-RCLEVLQASDNALE-NVDG 503

Query: 129 AFANGSCDLRSLGLNSNKLRG-SFPRYLADCTGLEVVNVGNNMIGDTFPSW---LGSLPG 184
                   L+ L L +N+L+  +  + L  C  L ++N+  N +             LP 
Sbjct: 504 VANLPR--LQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 561

Query: 185 LKILV 189
           +  ++
Sbjct: 562 VSSIL 566

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 54.4 bits (130), Expect = 3e-08
 Identities = 43/296 (14%), Positives = 86/296 (29%), Gaps = 36/296 (12%)

Query: 59  PPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLN 118
                         L       +   S +  + L  +    ++     +   + + + L 
Sbjct: 243 DVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLC 302

Query: 119 NNYLQGRIPDAFANGSCDLRSLGLNSNKL------RGSFPRYLADCTGLEVVNVGNNMIG 172
           +            +    + +   +  +          + R  A    L    +      
Sbjct: 303 DLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKS- 361

Query: 173 DTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVS 232
               S L S   L+ L   +           + +      +  L + +            
Sbjct: 362 TVLQSELESCKELQELEPENKWCL-------LTIILLMRALDPLLYEKE-------TLQY 407

Query: 233 LETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVL----KRIITI--------FTT 280
             T+K VD   +  L     +   ++SV         VL    K +  +         T 
Sbjct: 408 FSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTH 467

Query: 281 IDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKL 336
           +DLS N+ +  +P  L   + L VL  S N L  ++    AN+  L+ L L +N+L
Sbjct: 468 LDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRL 520

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 41/229 (17%), Positives = 76/229 (33%), Gaps = 35/229 (15%)

Query: 14  DSQRWKSLTYLDISNNFLT--QIEQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNN 71
           DS   + L   ++S    T  Q E    K +  L  +N     TI++             
Sbjct: 344 DSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMR---------- 393

Query: 72  KLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFA 131
                + P +Y   +L+Y     + L    P          +   L N+ L+        
Sbjct: 394 ----ALDPLLYEKETLQYF----STLKAVDPMRAAYLDDLRSKFLLENSVLK-------- 437

Query: 132 NGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLR 191
               D+R L L    L  +   +L     +  +++ +N +    P  L +L  L++L   
Sbjct: 438 MEYADVRVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRL-RALPPALAALRCLEVLQAS 494

Query: 192 SNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVD 240
            N     L  V+ +     L+ + L +N           VS   +  ++
Sbjct: 495 DNA----LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN 539

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 59.3 bits (144), Expect = 2e-10
 Identities = 32/156 (20%), Positives = 58/156 (37%), Gaps = 32/156 (20%)

Query: 20  SLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQ 76
           ++T + +  N +  I      P+K +  ++L NN I                       +
Sbjct: 33  TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS----------------------E 70

Query: 77  IPPSI-YSLSSLEYISLSHNNLSGTIPPCLGNFS--TQLTILHLNNNYLQGRIPDAFANG 133
           + P     L SL  + L  N ++  +P     F     L +L LN N +     DAF + 
Sbjct: 71  LAPDAFQGLRSLNSLVLYGNKIT-ELPK--SLFEGLFSLQLLLLNANKINCLRVDAFQDL 127

Query: 134 SCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNN 169
             +L  L L  NKL+       +    ++ +++  N
Sbjct: 128 H-NLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 59.3 bits (144), Expect = 2e-10
 Identities = 31/151 (20%), Positives = 58/151 (38%), Gaps = 33/151 (21%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGTIL 57
           L  N I+  I       +K L  +D+SNN ++++        +++  L L  N I     
Sbjct: 39  LEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT---- 93

Query: 58  VPPPSTRAFLFSNNKLFGQIPPSI-YSLSSLEYISLSHNNLSGTIPPCLGNFS--TQLTI 114
                             ++P S+   L SL+ + L+ N ++  +      F     L +
Sbjct: 94  ------------------ELPKSLFEGLFSLQLLLLNANKIN-CLRV--DAFQDLHNLNL 132

Query: 115 LHLNNNYLQGRIPDAFANGSCDLRSLGLNSN 145
           L L +N LQ  I     +    ++++ L  N
Sbjct: 133 LSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 39.6 bits (93), Expect = 6e-04
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 279 TTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVS-FANMIVLESLDLSSNKLH 337
             IDLS+NQ     P      +SL  L L  N +T  +P S F  +  L+ L L++NK++
Sbjct: 59  RRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN 117

Query: 338 GRIPE 342
             +  
Sbjct: 118 -CLRV 121

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 59.3 bits (144), Expect = 2e-10
 Identities = 28/151 (18%), Positives = 56/151 (37%), Gaps = 32/151 (21%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGTIL 57
           L+NN      +    ++   L  ++ SNN +T IE+        +  + L +N ++    
Sbjct: 39  LNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN--- 95

Query: 58  VPPPSTRAFLFSNNKLFGQIPPSI-YSLSSLEYISLSHNNLSGTIPPCLGNFS--TQLTI 114
                              +   +   L SL+ + L  N ++  +     +F   + + +
Sbjct: 96  -------------------VQHKMFKGLESLKTLMLRSNRIT-CVGN--DSFIGLSSVRL 133

Query: 115 LHLNNNYLQGRIPDAFANGSCDLRSLGLNSN 145
           L L +N +    P AF      L +L L +N
Sbjct: 134 LSLYDNQITTVAPGAFDTLH-SLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 28/146 (19%), Positives = 53/146 (36%), Gaps = 18/146 (12%)

Query: 100 TIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCT 159
            IP    +       L LNNN                LR +  ++NK+           +
Sbjct: 25  KIPE---HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS 81

Query: 160 GLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEA------LRI 213
           G+  + + +N + +        L  LK L+LRSNR           +  ++      +R+
Sbjct: 82  GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT--------CVGNDSFIGLSSVRL 133

Query: 214 IDLSHNEFTGFLPRWIFVSLETMKNV 239
           + L  N+ T  +    F +L ++  +
Sbjct: 134 LSLYDNQIT-TVAPGAFDTLHSLSTL 158

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 58.9 bits (143), Expect = 3e-10
 Identities = 38/238 (15%), Positives = 73/238 (30%), Gaps = 41/238 (17%)

Query: 20  SLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPPPS-------TRAFLFSNNK 72
                 ++   + +I   P  +   L L    ++    +P  +       +R ++  +  
Sbjct: 12  QEEDFRVTCKDIQRIPSLP-PSTQTLKLIETHLR---TIPSHAFSNLPNISRIYVSIDVT 67

Query: 73  LFGQIPPSI-YSLSSLEYISLSHNNLSGTIPPCLGNFS--TQLTILHLNNNYLQGRIPD- 128
           L  Q+     Y+LS + +I + +      I P          L  L + N  L+   PD 
Sbjct: 68  L-QQLESHSFYNLSKVTHIEIRNTRNLTYIDP--DALKELPLLKFLGIFNTGLK-MFPDL 123

Query: 129 AFANGSCDLRSLGLNSNKLRGSFPRYLAD--CTGLEVVNVGNNMIGDTFPSWLGSLPGLK 186
                +     L +  N    S P       C     + + NN    +   +  +   L 
Sbjct: 124 TKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLD 182

Query: 187 ILVLRSNR---------FYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLET 235
            + L  N+         F G        +      ++D+S    T  LP      L+ 
Sbjct: 183 AVYLNKNKYLTVIDKDAFGG--------VY-SGPSLLDVSQTSVT-ALPSKGLEHLKE 230

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 42.3 bits (100), Expect = 9e-05
 Identities = 37/264 (14%), Positives = 78/264 (29%), Gaps = 77/264 (29%)

Query: 79  PSIYSLSSLEYISLSHNNLSGTIPPCLGNFS--TQLTILHLNNNYLQGRIP-DAFANGSC 135
           PS+    S + + L   +L  TIP     FS    ++ ++++ +    ++   +F N S 
Sbjct: 27  PSL--PPSTQTLKLIETHLR-TIPS--HAFSNLPNISRIYVSIDVTLQQLESHSFYNLS- 80

Query: 136 DLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRF 195
            +  + + + +                             P  L  LP LK L + +   
Sbjct: 81  KVTHIEIRNTRNLTYID-----------------------PDALKELPLLKFLGIFNTGL 117

Query: 196 YGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDY 255
                ++  +   +   I++++ N +   +P   F  L                      
Sbjct: 118 KM-FPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNET------------------ 158

Query: 256 YQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGS 315
                                   T+ L +N F   +     +   L  + L+ N     
Sbjct: 159 -----------------------LTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTV 194

Query: 316 IPV-SFANMI-VLESLDLSSNKLH 337
           I   +F  +      LD+S   + 
Sbjct: 195 IDKDAFGGVYSGPSLLDVSQTSVT 218

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 58.5 bits (142), Expect = 5e-10
 Identities = 41/205 (20%), Positives = 77/205 (37%), Gaps = 39/205 (19%)

Query: 19  KSLTYLDISNNFLTQIE-QHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQI 77
            +    ++    +T +  Q     +   N  N+ IQ                       +
Sbjct: 19  ANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQ----------------------SL 56

Query: 78  PPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDL 137
              +   ++L+ + LSHN +S  + P L +  T+L  L +N N    R+ +     S  L
Sbjct: 57  AG-MQFFTNLKELHLSHNQIS-DLSP-LKDL-TKLEELSVNRN----RLKNLNGIPSACL 108

Query: 138 RSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYG 197
             L L++N+L       L     LE++++ NN +       LG L  L++L L  N    
Sbjct: 109 SRLFLDNNEL--RDTDSLIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNE--- 161

Query: 198 PLCEVNIMLPFEALRIIDLSHNEFT 222
            +     +   + +  IDL+  +  
Sbjct: 162 -ITNTGGLTRLKKVNWIDLTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 37/195 (18%), Positives = 74/195 (37%), Gaps = 38/195 (19%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ-HPWKNITVLNLQNNTIQGTILVP 59
           L    +   +S+ +      +   +  N+ +  +     + N+  L+L +N I       
Sbjct: 26  LGKQSVTDLVSQKE---LSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQIS------ 76

Query: 60  PPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNN 119
                            + P +  L+ LE +S++ N L   +          L+ L L+N
Sbjct: 77  ----------------DLSP-LKDLTKLEELSVNRNRLK-NLNGIPS---ACLSRLFLDN 115

Query: 120 NYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWL 179
           N L+    D+  +   +L  L + +NKL+      L   + LEV+++  N I +T    L
Sbjct: 116 NELRD--TDSLIHLK-NLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEITNTGG--L 168

Query: 180 GSLPGLKILVLRSNR 194
             L  +  + L   +
Sbjct: 169 TRLKKVNWIDLTGQK 183

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 55.1 bits (132), Expect = 1e-08
 Identities = 16/102 (15%), Positives = 31/102 (30%), Gaps = 6/102 (5%)

Query: 70  NNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFS--TQLTILHLNNNYLQGRIP 127
                      +    +L  + + +      +     +     +L  L +  + L+   P
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLEL--RDLRGLGELRNLTIVKSGLRFVAP 73

Query: 128 DAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNN 169
           DAF      L  L L+ N L  S          L+ + +  N
Sbjct: 74  DAFHFTP-RLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.6 bits (102), Expect = 7e-05
 Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 3/68 (4%)

Query: 279 TTIDLSSNQFQGEIP-QVLGDFKSLIVLNLSHNGLTGSIPV-SFANMIVLESLDLSSNKL 336
           T + + + Q    +  + L     L  L +  +GL   +   +F     L  L+LS N L
Sbjct: 34  TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNLSFNAL 92

Query: 337 HGRIPEQF 344
                +  
Sbjct: 93  ESLSWKTV 100

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.3 bits (96), Expect = 3e-04
 Identities = 23/130 (17%), Positives = 44/130 (33%), Gaps = 44/130 (33%)

Query: 19  KSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIP 78
           ++LT L I N           +++  L L+                              
Sbjct: 31  ENLTELYIENQ----------QHLQHLELR------------------------------ 50

Query: 79  PSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLR 138
             +  L  L  +++  + L   + P   +F+ +L+ L+L+ N L+          S  L+
Sbjct: 51  -DLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS--LQ 106

Query: 139 SLGLNSNKLR 148
            L L+ N L 
Sbjct: 107 ELVLSGNPLH 116

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 54.3 bits (131), Expect = 1e-08
 Identities = 39/161 (24%), Positives = 67/161 (41%), Gaps = 38/161 (23%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIE----QHPWKNITVLNLQNNTIQGTI 56
           L +  +   +S +  +    LT+L++  N L  +           +  L L NN +    
Sbjct: 42  LQSTGLA-TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDL-TELGTLGLANNQLA--- 96

Query: 57  LVPPPSTRAFLFSNNKLFGQIPPSIY-SLSSLEYISLSHNNLSGTIPPCLGNFS--TQLT 113
                               +P  ++  L+ L+ + L  N L  ++P   G F   T+L 
Sbjct: 97  -------------------SLPLGVFDHLTQLDKLYLGGNQLK-SLPS--GVFDRLTKLK 134

Query: 114 ILHLNNNYLQGRIPD-AFANGSCDLRSLGLNSNKLRGSFPR 153
            L LN N LQ  IP  AF   + +L++L L++N+L+ S P 
Sbjct: 135 ELRLNTNQLQ-SIPAGAFDKLT-NLQTLSLSTNQLQ-SVPH 172

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 35/146 (23%), Positives = 56/146 (38%), Gaps = 26/146 (17%)

Query: 60  PPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNN 119
           P  T      +  L      +   L+ L +++L +N L  T+   + +  T+L  L L N
Sbjct: 34  PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLAN 92

Query: 120 NYLQ---GRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADC-TGLEVVNVGNNMIGDTF 175
           N L      + D        L  L L  N+L+ S P  + D  T L+ + +  N      
Sbjct: 93  NQLASLPLGVFDHLTQ----LDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTN------ 141

Query: 176 PSWLGSLP--------GLKILVLRSN 193
              L S+P         L+ L L +N
Sbjct: 142 --QLQSIPAGAFDKLTNLQTLSLSTN 165

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 51.5 bits (124), Expect = 4e-08
 Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 16/120 (13%)

Query: 58  VPP--PSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFS--TQLT 113
           +P   P     L+ +   F  +P  + +   L  I LS+N +S T+     +FS  TQL 
Sbjct: 25  LPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIS-TLSN--QSFSNMTQLL 81

Query: 114 ILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKL----RGSFPRYLADCTGLEVVNVGNN 169
            L L+ N L+  IP    +G   LR L L+ N +     G+F     D + L  + +G N
Sbjct: 82  TLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDISVVPEGAF----NDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 45.8 bits (109), Expect = 5e-06
 Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 39/133 (29%)

Query: 22  TYLDISNNFLTQI--EQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPP 79
           T L +  N  T +  E   +K++T+++L NN I                        +  
Sbjct: 34  TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIS----------------------TLSN 71

Query: 80  SIY-SLSSLEYISLSHNNLSGTIPPCLGNFS--TQLTILHLNNNYLQGRIPD-AFANGSC 135
             + +++ L  + LS+N L   IPP    F     L +L L+ N +   +P+ AF +   
Sbjct: 72  QSFSNMTQLLTLILSYNRLR-CIPP--RTFDGLKSLRLLSLHGNDIS-VVPEGAFND--- 124

Query: 136 DLRSL---GLNSN 145
            L +L    + +N
Sbjct: 125 -LSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 42.7 bits (101), Expect = 5e-05
 Identities = 22/59 (37%), Positives = 38/59 (64%), Gaps = 3/59 (5%)

Query: 279 TTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPV-SFANMIVLESLDLSSNKL 336
           T + L  NQF   +P+ L ++K L +++LS+N ++ ++   SF+NM  L +L LS N+L
Sbjct: 34  TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRL 90

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 52.4 bits (126), Expect = 7e-08
 Identities = 44/323 (13%), Positives = 84/323 (26%), Gaps = 72/323 (22%)

Query: 19  KSLTYLDISNNFLTQIE--------QHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSN 70
            SL  L+++   +T ++              +  +NL +  +       P   R  L   
Sbjct: 72  SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLD------PAGLRTLLP-- 123

Query: 71  NKLFGQIPPSIYSLSSLEYISLSHNNLSGT----IPPCLGNFSTQLTILHLNNNYLQGRI 126
                              + L  N+L       +   L +   Q+T L L+NN L    
Sbjct: 124 ------------VFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAG 171

Query: 127 PDAFANG---SCDLRSLGLNSNKLRGSFPRYLAD----CTGLEVVNVGNNMIGDTFPSWL 179
                 G   +  +  L L    L       LA        L+ +NV  N  GDT     
Sbjct: 172 VAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDT----- 226

Query: 180 GSLPGLKIL--VLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMK 237
                   L    R +                +L ++ L  NE +    + +       +
Sbjct: 227 ----AALALARAAREHP---------------SLELLHLYFNELSSEGRQVLRDLGGAAE 267

Query: 238 NVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTI---DLSSNQFQGEIPQ 294
                           +Y+   ++   +  +   +  +     +   DL  ++     P 
Sbjct: 268 GGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPW 327

Query: 295 VLGDF----KSLIVLNLSHNGLT 313
                      +  L        
Sbjct: 328 RKAQLLRVEGEVRALLEQLGSSG 350

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 50/295 (16%), Positives = 84/295 (28%), Gaps = 69/295 (23%)

Query: 66  FLF-----SNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNN 120
            L       N  +  Q+   I +L +LE        L       L   S  L  L  +  
Sbjct: 2   LLVGLLSAHNRAVLAQLGCPIKNLDALENAQAIKKKLGKLGRQVLPP-SELLDHLFFHYE 60

Query: 121 YLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLAD------CTGLEVVNVGNNMIGDT 174
             Q +   A    S  LR L L   ++       +A          L+ VN+ +  +   
Sbjct: 61  -FQNQRFSAEVLSS--LRQLNLAGVRMTPVKCTVVAAVLGSGRHA-LDEVNLASCQLDPA 116

Query: 175 FPSWLGS-LPGLKILVLRSNRF----YGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWI 229
               L       + L L+ N         L ++ ++     +  + LS+N  T      +
Sbjct: 117 GLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL-LLHDQCQITTLRLSNNPLTAAGVAVL 175

Query: 230 FVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQ 289
              L    +V                                       T + L      
Sbjct: 176 MEGLAGNTSV---------------------------------------THLSLLHTGLG 196

Query: 290 GE----IPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIV----LESLDLSSNKL 336
            E    +   L   + L  LN+++NG   +  ++ A        LE L L  N+L
Sbjct: 197 DEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL 251

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 3e-07
 Identities = 54/403 (13%), Positives = 109/403 (27%), Gaps = 113/403 (28%)

Query: 9   RISKSDSQR-WKSLTYLDISNNFLTQIEQHPWKNIT----VLNLQNN----------TIQ 53
            I     Q    +  Y++  +      +     N++     L L+             I 
Sbjct: 97  PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID 156

Query: 54  G------TILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGN 107
           G      T +         +  + K+  ++   I+      +++L + N   T+   L  
Sbjct: 157 GVLGSGKTWVA------LDVCLSYKVQCKMDFKIF------WLNLKNCNSPETVLEMLQK 204

Query: 108 FSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLAD---CTGLEVV 164
              Q+       N+         ++ S +++   L  + ++    R L        L V+
Sbjct: 205 LLYQID-----PNWTSR------SDHSSNIK---LRIHSIQAELRRLLKSKPYENCLLVL 250

Query: 165 -NVGNNMIGDTF------------PSWLGSLPGLKILVLRSNRFYGPLCE---------- 201
            NV N    + F                  L       +  +     L            
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310

Query: 202 VNI---MLPFEALRIIDLSHN----EFTGFLPRWIF---VSLETMKNVDEKGSDGLYMQG 251
           ++     LP E L       +         L  W     V+ + +  + E   + L    
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370

Query: 252 EEDYYQD------SVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDF--KSLI 303
               +        S  +       +L           +  +  + ++  V+      SL 
Sbjct: 371 YRKMFDRLSVFPPSAHIPTI----LLSL---------IWFDVIKSDVMVVVNKLHKYSL- 416

Query: 304 VLNLSHNGLTGSIPVSFANMIVLESLDLSSNK--LHGRIPEQF 344
            +       T SIP      I LE      N+  LH  I + +
Sbjct: 417 -VEKQPKESTISIP-----SIYLELKVKLENEYALHRSIVDHY 453

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 49.6 bits (119), Expect = 5e-07
 Identities = 42/145 (28%), Positives = 67/145 (46%), Gaps = 21/145 (14%)

Query: 20  SLTYLDISNNFLTQIEQ-HPWKNITVLNLQNNTIQ---GTILVPPPSTRAFLFSNNKLFG 75
           ++ YL +  N L  I       N+T L L  N +Q     +     + +  +   N+L  
Sbjct: 64  NVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL-Q 122

Query: 76  QIPPSIY-SLSSLEYISLSHNNLSGTIPPCLGNFS--TQLTILHLNNNYLQGRIPDAFAN 132
            +P  ++  L++L Y++L+HN L  ++P   G F   T LT L L+ N LQ  +P     
Sbjct: 123 SLPDGVFDKLTNLTYLNLAHNQLQ-SLPK--GVFDKLTNLTELDLSYNQLQ-SLP----E 174

Query: 133 GSCD----LRSLGLNSNKLRGSFPR 153
           G  D    L+ L L  N+L+ S P 
Sbjct: 175 GVFDKLTQLKDLRLYQNQLK-SVPD 198

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 48.1 bits (115), Expect = 7e-07
 Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 16/105 (15%)

Query: 58  VP---PPSTRAFLFSNNKLFGQIPPSIY--SLSSLEYISLSHNNLSGTIPPCLGNFS--T 110
           +P   P  T   L ++N+L G+I        L  L  + L  N L+  I P    F   +
Sbjct: 23  IPRDIPLHTTELLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLT-GIEP--NAFEGAS 78

Query: 111 QLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKL----RGSF 151
            +  L L  N ++  I +    G   L++L L  N++     GSF
Sbjct: 79  HIQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSF 122

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 45.4 bits (108), Expect = 7e-06
 Identities = 29/133 (21%), Positives = 49/133 (36%), Gaps = 37/133 (27%)

Query: 22  TYLDISNNFLTQIEQ----HPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQI 77
           T L +++N L +I          ++  L L+ N + G                      I
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG----------------------I 69

Query: 78  PPSIY-SLSSLEYISLSHNNLSGTIPPCLGNFS--TQLTILHLNNNYLQGRIPD-AFAN- 132
            P+ +   S ++ + L  N +   I      F    QL  L+L +N +   +   +F + 
Sbjct: 70  EPNAFEGASHIQELQLGENKIK-EISN--KMFLGLHQLKTLNLYDNQIS-CVMPGSFEHL 125

Query: 133 GSCDLRSLGLNSN 145
            S  L SL L SN
Sbjct: 126 NS--LTSLNLASN 136

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.4 bits (108), Expect = 5e-06
 Identities = 24/125 (19%), Positives = 47/125 (37%), Gaps = 10/125 (8%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIE--QHPWKNITVLNLQNNTIQGTILV 58
           L+   I  + ++  +        LD+    +  IE           ++  +N I+     
Sbjct: 4   LTAELIE-QAAQYTNA--VRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60

Query: 59  PP-PSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLS--GTIPPCLGNFSTQLTIL 115
           P     +  L +NN++         +L  L  + L++N+L   G + P L +    LT L
Sbjct: 61  PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDP-LASL-KSLTYL 118

Query: 116 HLNNN 120
            +  N
Sbjct: 119 CILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 23/144 (15%), Positives = 45/144 (31%), Gaps = 30/144 (20%)

Query: 79  PSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLR 138
               +      + L    +   +   LG    Q   +  ++N ++               
Sbjct: 13  AQYTNAVRDRELDLRGYKI--PVIENLGATLDQFDAIDFSDNEIR--------------- 55

Query: 139 SLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGP 198
                  KL G           L+ + V NN I         +LP L  L+L +N     
Sbjct: 56  -------KLDG-----FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE- 102

Query: 199 LCEVNIMLPFEALRIIDLSHNEFT 222
           L +++ +   ++L  + +  N  T
Sbjct: 103 LGDLDPLASLKSLTYLCILRNPVT 126

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 46.2 bits (110), Expect = 5e-06
 Identities = 29/138 (21%), Positives = 50/138 (36%), Gaps = 34/138 (24%)

Query: 22  TYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIP 78
             L + +N +T++E        N+  L L +N +                        +P
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG----------------------ALP 80

Query: 79  PSIY-SLSSLEYISLSHNNLSGTIPPCLGNFS--TQLTILHLNNNYLQGRIPDAFANGSC 135
             ++ SL+ L  + L  N L+  +P     F     L  L +  N L   +P      + 
Sbjct: 81  VGVFDSLTQLTVLDLGTNQLT-VLPS--AVFDRLVHLKELFMCCNKLT-ELPRGIERLT- 135

Query: 136 DLRSLGLNSNKLRGSFPR 153
            L  L L+ N+L+ S P 
Sbjct: 136 HLTHLALDQNQLK-SIPH 152

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 46.2 bits (110), Expect = 5e-06
 Identities = 34/138 (24%), Positives = 52/138 (37%), Gaps = 11/138 (7%)

Query: 60  PPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNN 119
           P + +     +N++    P    SL +L+ + L  N L   +P  + +  TQLT+L L  
Sbjct: 39  PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGT 97

Query: 120 NYLQGRIPDAFANGSCD----LRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTF 175
           N L       F     D    L+ L +  NKL    PR +   T L  + +  N +    
Sbjct: 98  NQLTVLPSAVF-----DRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIP 151

Query: 176 PSWLGSLPGLKILVLRSN 193
                 L  L    L  N
Sbjct: 152 HGAFDRLSSLTHAYLFGN 169

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.4 bits (108), Expect = 6e-06
 Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 22/131 (16%)

Query: 77  IPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFS--TQLTILHLNNNYLQGRIPDAFANGS 134
           +  ++ +L + ++++LS NN+       + + S    L IL L  N ++ +I +  A   
Sbjct: 40  MDATLSTLKACKHLALSTNNIE-----KISSLSGMENLRILSLGRNLIK-KIENLDAVAD 93

Query: 135 CDLRSLGLNSN---KLRGSFPRYLADCTGLEVVNVGNNMIGDTFP-SWLGSLPGLKILVL 190
             L  L ++ N    L G     +     L V+ + NN I +      L +L  L+ L+L
Sbjct: 94  T-LEELWISYNQIASLSG-----IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLL 147

Query: 191 RSNRFYGPLCE 201
             N    PL  
Sbjct: 148 AGN----PLYN 154

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.1 bits (94), Expect = 4e-04
 Identities = 32/193 (16%), Positives = 65/193 (33%), Gaps = 62/193 (32%)

Query: 9   RISKSDSQRW--KSLTYLDISNNFLTQIEQ-HPWKNITVLNLQNNTIQGTILVPPPSTRA 65
            I K D+     K+  +L +S N + +I      +N+ +L+L  N I+            
Sbjct: 36  PIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIK------------ 83

Query: 66  FLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGR 125
                     +I        +LE + +S+N ++ ++          L +L+++NN +   
Sbjct: 84  ----------KIENLDAVADTLEELWISYNQIA-SLSGIEKL--VNLRVLYMSNNKIT-- 128

Query: 126 IPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSW------- 178
                     +   +              LA    LE + +  N + + +          
Sbjct: 129 ----------NWGEID------------KLAALDKLEDLLLAGNPLYNDYKENNATSEYR 166

Query: 179 ---LGSLPGLKIL 188
              +  LP LK L
Sbjct: 167 IEVVKRLPNLKKL 179

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 42/142 (29%), Positives = 60/142 (42%), Gaps = 41/142 (28%)

Query: 22  TYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIP 78
           TYLD+  N L  +         ++T L L  N +Q                       +P
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ----------------------SLP 68

Query: 79  PSIY-SLSSLEYISLSHNNLSGTIPPCLGNFS--TQLTILHLNNNYLQGRIPDAFANGSC 135
             ++  L+SL Y++LS N L  ++P   G F   TQL  L LN N LQ  +P    +G  
Sbjct: 69  NGVFNKLTSLTYLNLSTNQLQ-SLPN--GVFDKLTQLKELALNTNQLQ-SLP----DGVF 120

Query: 136 D----LRSLGLNSNKLRGSFPR 153
           D    L+ L L  N+L+ S P 
Sbjct: 121 DKLTQLKDLRLYQNQLK-SVPD 141

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 8/91 (8%)

Query: 60  PPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNN 119
           P  T       N L          L+SL  + L  N L  ++P  + N  T LT L+L+ 
Sbjct: 27  PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLST 85

Query: 120 NYLQG---RIPDAFANGSCDLRSLGLNSNKL 147
           N LQ     + D        L+ L LN+N+L
Sbjct: 86  NQLQSLPNGVFDKLTQ----LKELALNTNQL 112

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 14/103 (13%)

Query: 58  VP---PPSTRAFLFSNNKLFGQIPPSIY-SLSSLEYISLSHNNLSGTIPPCLGNFS--TQ 111
           VP   P S       +NKL   +P  ++  L+ L  +SLS N +  ++P   G F   T+
Sbjct: 22  VPTGIPSSATRLELESNKL-QSLPHGVFDKLTQLTKLSLSQNQIQ-SLPD--GVFDKLTK 77

Query: 112 LTILHLNNNYLQGRIPD-AFANGSCDLRSLGLNSNKLRGSFPR 153
           LTIL+L+ N LQ  +P+  F   +  L+ L L++N+L+ S P 
Sbjct: 78  LTILYLHENKLQ-SLPNGVFDKLT-QLKELALDTNQLK-SVPD 117

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 39.9 bits (94), Expect = 4e-04
 Identities = 32/131 (24%), Positives = 53/131 (40%), Gaps = 34/131 (25%)

Query: 22  TYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIP 78
           T L++ +N L  +          +T L+L  N IQ                       +P
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ----------------------SLP 68

Query: 79  PSIY-SLSSLEYISLSHNNLSGTIPPCLGNFS--TQLTILHLNNNYLQGRIPD-AFANGS 134
             ++  L+ L  + L  N L  ++P   G F   TQL  L L+ N L+  +PD  F   +
Sbjct: 69  DGVFDKLTKLTILYLHENKLQ-SLPN--GVFDKLTQLKELALDTNQLK-SVPDGIFDRLT 124

Query: 135 CDLRSLGLNSN 145
             L+ + L++N
Sbjct: 125 -SLQKIWLHTN 134

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 41.5 bits (98), Expect = 9e-05
 Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 16/90 (17%)

Query: 58  VP---PPSTRAFLFSNNKLFGQIPPSIY-SLSSLEYISLSHNNLSGTIPPCLGNFS--TQ 111
           VP   P   +    +NN++  ++ P ++  L +L+ +  + N L+  IP   G F   TQ
Sbjct: 27  VPAGIPTDKQRLWLNNNQI-TKLEPGVFDHLVNLQQLYFNSNKLT-AIPT--GVFDKLTQ 82

Query: 112 LTILHLNNNYLQGRIPD-AFANGSCDLRSL 140
           LT L LN+N+L+  IP  AF N    L+SL
Sbjct: 83  LTQLDLNDNHLK-SIPRGAFDN----LKSL 107

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 23/122 (18%), Positives = 42/122 (34%), Gaps = 8/122 (6%)

Query: 83  SLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGL 142
           + +++  + L +   +      L      L  L L N  L   + +        L+ L L
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN--LPKLPKLKKLEL 78

Query: 143 NSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFP-SWLGSLPGLKILVLRSNRFYGPLCE 201
           + N++ G           L  +N+  N + D      L  L  LK L L +      +  
Sbjct: 79  SENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC----EVTN 134

Query: 202 VN 203
           +N
Sbjct: 135 LN 136

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 23/114 (20%), Positives = 40/114 (35%), Gaps = 7/114 (6%)

Query: 111 QLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLR--GSFPRYLADCTGLEVVNVGN 168
            +  L L+N        +       +L  L L +  L    + P+       L+ + +  
Sbjct: 25  AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPK----LPKLKKLELSE 80

Query: 169 NMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFT 222
           N I          LP L  L L  N+    +  +  +   E L+ +DL + E T
Sbjct: 81  NRIFGGLDMLAEKLPNLTHLNLSGNKLKD-ISTLEPLKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 30/122 (24%), Positives = 48/122 (39%), Gaps = 8/122 (6%)

Query: 4   NRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ--HPWKNITVLNLQNNTIQG-TILVPP 60
            RI   +        + L  LD   +   +IE     + N+  L+L N  +   + L   
Sbjct: 12  RRIHLELRNRTPAAVRELV-LDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKL 70

Query: 61  PSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLS--GTIPPCLGNFSTQLTILHLN 118
           P  +    S N++FG +      L +L +++LS N L    T+ P L      L  L L 
Sbjct: 71  PKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEP-LKKL-ECLKSLDLF 128

Query: 119 NN 120
           N 
Sbjct: 129 NC 130

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 21/114 (18%), Positives = 41/114 (35%), Gaps = 7/114 (6%)

Query: 111 QLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLR--GSFPRYLADCTGLEVVNVGN 168
            +  L L+N+       +   +   +L  L   +  L    + P+       L+ + + +
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPK----LNKLKKLELSD 73

Query: 169 NMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFT 222
           N +           P L  L L  N+    L  +  +   E L+ +DL + E T
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKIKD-LSTIEPLKKLENLKSLDLFNCEVT 126

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.5 bits (96), Expect = 3e-04
 Identities = 22/202 (10%), Positives = 61/202 (30%), Gaps = 25/202 (12%)

Query: 75  GQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGS 134
             + P + ++  L  + +                   L  L + +  L   + +      
Sbjct: 162 VDLSPVLDAMPLLNNLKIK----GTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSD 217

Query: 135 C-DLRSLGL---NSNKLRGSFPRYLAD------CTGLEVVNVGNNMIGDTFPSWLGS--- 181
             +L  L L     +                     L+ + + +    +           
Sbjct: 218 LPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDI 277

Query: 182 LPGLKILVLRSNRF--YGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNV 239
           LP L+ + + +      G    ++ +   + L+ I++ +N  +  + + +  SL    +V
Sbjct: 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMKIDV 337

Query: 240 DEKGSDGLYMQGEEDYYQDSVT 261
            +        + ++DY    +T
Sbjct: 338 SDS------QEYDDDYSYPMIT 353

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.5 bits (96), Expect = 3e-04
 Identities = 8/77 (10%), Positives = 28/77 (36%), Gaps = 7/77 (9%)

Query: 278 FTTIDLSSNQFQGEIPQVLGDF---KSLIVLNLSHNGLTGS----IPVSFANMIVLESLD 330
              + +   + Q  + ++  +      L  +++S   LT      +      +  L+ ++
Sbjct: 254 LKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFIN 313

Query: 331 LSSNKLHGRIPEQFVDA 347
           +  N L   + ++   +
Sbjct: 314 MKYNYLSDEMKKELQKS 330

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	362
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.98
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.98
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.98
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.96
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.88
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.88
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.88
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.87
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.86
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.84
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.84
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.81
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.81
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.81
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.8
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.78
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.78
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.77
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.77
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.76
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.75
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.75
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.74
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.74
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.73
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.73
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.73
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.72
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.72
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.71
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.67
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.65
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.64
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.64
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.61
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.6
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.59
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.58
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.58
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.56
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.55
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.53
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.52
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.52
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.47
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.47
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.45
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.45
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.43
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.42
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.39
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.36
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.33
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.33
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.3
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.28
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.25
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.13
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.99
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.97
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.95
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.94
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.94
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.9
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.8
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.62
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.47
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.41
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.15
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.01
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.79
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.5
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.93
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.63

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.3e-39  Score=317.69  Aligned_cols=353  Identities=30%  Similarity=0.409  Sum_probs=194.1

Q ss_pred             CCCCcccccCCccccccCCCCcEEEcCCCccccccc---CCcCCCcEEEccCCcCCCCC----CCCCCCccEEEccCccc
Q 044176            1 LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGTI----LVPPPSTRAFLFSNNKL   73 (362)
Q Consensus         1 L~~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~---~~~~~L~~L~l~~n~~~~~~----~~~~~~L~~L~l~~~~~   73 (362)
                      |++|+++|.+|..++..+++|+.|++++|.++...+   ..+++|+.|++++|.+.+..    +..+++|++|++++|.+
T Consensus       276 L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l  355 (768)
T 3rgz_A          276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF  355 (768)
T ss_dssp             CCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEE
T ss_pred             CcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCcc
Confidence            355666666666665555666666666666554333   24455555555555544221    22344455555555544


Q ss_pred             ccCCcccccCCC-C--------------------------CCEEEcccCcccccCCCCcccccccccEEEcccccccCcc
Q 044176           74 FGQIPPSIYSLS-S--------------------------LEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRI  126 (362)
Q Consensus        74 ~~~~~~~~~~l~-~--------------------------L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~  126 (362)
                      .+.+|..+.+++ +                          |++|++++|.+++.+|..+..+ ++|++|++++|.+.+..
T Consensus       356 ~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~  434 (768)
T 3rgz_A          356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC-SELVSLHLSFNYLSGTI  434 (768)
T ss_dssp             EECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGC-TTCCEEECCSSEEESCC
T ss_pred             CccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcC-CCCCEEECcCCcccCcc
Confidence            444444443333 3                          3333333333333333334333 34445555554444444


Q ss_pred             hhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccc
Q 044176          127 PDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIML  206 (362)
Q Consensus       127 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  206 (362)
                      |..+... ++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..++.+++|++|++++|.+.+..+..+  .
T Consensus       435 p~~l~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~  511 (768)
T 3rgz_A          435 PSSLGSL-SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI--G  511 (768)
T ss_dssp             CGGGGGC-TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG--G
T ss_pred             cHHHhcC-CCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHH--h
Confidence            4444433 445555555555544445555555555555555555544445555555555555555555554444332  4


Q ss_pred             cCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcc-cccCCccc---------cc-------------------
Q 044176          207 PFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGL-YMQGEEDY---------YQ-------------------  257 (362)
Q Consensus       207 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~~~~~~---------~~-------------------  257 (362)
                      .+++|++|++++|.+.+..|.. +..+++|+.+++.++... .++.....         ..                   
T Consensus       512 ~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  590 (768)
T 3rgz_A          512 RLENLAILKLSNNSFSGNIPAE-LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGA  590 (768)
T ss_dssp             GCTTCCEEECCSSCCEEECCGG-GGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSS
T ss_pred             cCCCCCEEECCCCcccCcCCHH-HcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccc
Confidence            4555555555555555444443 444555555555544322 00000000         00                   


Q ss_pred             -------cc----------------eeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCcc
Q 044176          258 -------DS----------------VTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTG  314 (362)
Q Consensus       258 -------~~----------------~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~  314 (362)
                             ..                ...............+++|+.||+++|++++.+|..++.+++|+.|+|++|++++
T Consensus       591 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g  670 (768)
T 3rgz_A          591 GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG  670 (768)
T ss_dssp             EEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred             ccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCC
Confidence                   00                0000000011112235778899999999988889889999999999999999998


Q ss_pred             CchhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhccCCCccccC
Q 044176          315 SIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFARPDLYTN  361 (362)
Q Consensus       315 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~~~~l~~n  361 (362)
                      .+|..+..+++|+.||+++|++++.+|+.+..++.|++|   ++++|
T Consensus       671 ~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L---~ls~N  714 (768)
T 3rgz_A          671 SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI---DLSNN  714 (768)
T ss_dssp             CCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEE---ECCSS
T ss_pred             CCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEE---ECcCC
Confidence            899999999999999999999999999888887777776   66666

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=7e-39  Score=312.47  Aligned_cols=353  Identities=26%  Similarity=0.375  Sum_probs=258.1

Q ss_pred             CCCCcccccCCccccccCCCCcEEEcCCCcccc-ccc---CCcCCCcEEEccCCcCCCCCC---CCCCCccEEEccCccc
Q 044176            1 LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQ-IEQ---HPWKNITVLNLQNNTIQGTIL---VPPPSTRAFLFSNNKL   73 (362)
Q Consensus         1 L~~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~-~~~---~~~~~L~~L~l~~n~~~~~~~---~~~~~L~~L~l~~~~~   73 (362)
                      |++|+++|.+|..   .+++|+.|++++|.+++ ++.   ..+++|+.|++++|.+.+..+   ..+++|++|++++|.+
T Consensus       254 Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l  330 (768)
T 3rgz_A          254 ISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF  330 (768)
T ss_dssp             CCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEE
T ss_pred             CCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcc
Confidence            5789999888876   56999999999999984 444   235899999999999876544   4489999999999999


Q ss_pred             ccCCccc-ccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcC-CCCccEEeccCCcccCCC
Q 044176           74 FGQIPPS-IYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANG-SCDLRSLGLNSNKLRGSF  151 (362)
Q Consensus        74 ~~~~~~~-~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~  151 (362)
                      .+.+|.. +.++++|++|++++|.+++.+|..+..+.++|++|++++|.+.+..|..+... +++|++|++++|.+++..
T Consensus       331 ~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~  410 (768)
T 3rgz_A          331 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI  410 (768)
T ss_dssp             EEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEEC
T ss_pred             cCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcccccc
Confidence            8777765 99999999999999999888898888773378888888887776566555431 256777777777776666


Q ss_pred             chhhhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHh
Q 044176          152 PRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFV  231 (362)
Q Consensus       152 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~  231 (362)
                      |..+..+++|+.|++++|.+.+..|..++.+++|+.|++++|.+.+..+..+  ..+++|++|++++|.+.+..|.. +.
T Consensus       411 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p~~-l~  487 (768)
T 3rgz_A          411 PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL--MYVKTLETLILDFNDLTGEIPSG-LS  487 (768)
T ss_dssp             CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSCCCSCCCGG-GG
T ss_pred             CHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHH--cCCCCceEEEecCCcccCcCCHH-Hh
Confidence            6777777777777777777666666667777777777777776665444433  55666777777777666555554 55


Q ss_pred             hhhhhhhccccCCCccc-ccCCccccccceeeee--cC---cchHhhhhcccccEEeccCcccCCCcchhh---------
Q 044176          232 SLETMKNVDEKGSDGLY-MQGEEDYYQDSVTVTV--KG---RDLVLKRIITIFTTIDLSSNQFQGEIPQVL---------  296 (362)
Q Consensus       232 ~~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~---------  296 (362)
                      .+++|+.+++.++.... .+...........+..  ..   ..+.....+++|+.|++++|.+++.+|..+         
T Consensus       488 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~  567 (768)
T 3rgz_A          488 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAA  567 (768)
T ss_dssp             GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCC
T ss_pred             cCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhh
Confidence            66666666666665431 1111111111111111  11   112233447889999999998876655433         


Q ss_pred             -------------------------------------------------------------cCCCCCcEEEccCCcCccC
Q 044176          297 -------------------------------------------------------------GDFKSLIVLNLSHNGLTGS  315 (362)
Q Consensus       297 -------------------------------------------------------------~~~~~L~~L~l~~n~i~~~  315 (362)
                                                                                   ..+++|+.|++++|++++.
T Consensus       568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~  647 (768)
T 3rgz_A          568 NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY  647 (768)
T ss_dssp             STTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSC
T ss_pred             hccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCccccc
Confidence                                                                         3357899999999999999


Q ss_pred             chhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhccCCCccccCC
Q 044176          316 IPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFARPDLYTNA  362 (362)
Q Consensus       316 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~~~~l~~n~  362 (362)
                      +|..+..+++|+.|++++|++++.+|+.|..++.|++|   |+++|+
T Consensus       648 ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L---dLs~N~  691 (768)
T 3rgz_A          648 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNIL---DLSSNK  691 (768)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE---ECCSSC
T ss_pred             CCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEE---ECCCCc
Confidence            99999999999999999999999999999998888877   777774

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=2.4e-36  Score=288.37  Aligned_cols=344  Identities=19%  Similarity=0.239  Sum_probs=267.3

Q ss_pred             CCcccccCCccccccCCCCcEEEcCCCcccc------------------ccc--C--CcCCCcEEEccCCcCCCCCCC--
Q 044176            3 NNRIRGRISKSDSQRWKSLTYLDISNNFLTQ------------------IEQ--H--PWKNITVLNLQNNTIQGTILV--   58 (362)
Q Consensus         3 ~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~------------------~~~--~--~~~~L~~L~l~~n~~~~~~~~--   58 (362)
                      +|+++| +|.++.. +++|+.|++++|.++.                  +|.  .  .+++|++|++++|.+.+..+.  
T Consensus       192 ~n~l~~-ip~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l  269 (636)
T 4eco_A          192 SNNITF-VSKAVMR-LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL  269 (636)
T ss_dssp             SCEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT
T ss_pred             cCCCcc-CCHHHhc-ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH
Confidence            689997 9987665 4999999999999999                  776  4  789999999999998876554  


Q ss_pred             -CCCCccEEEccCcc-ccc-CCcccccCC------CCCCEEEcccCcccccCCC--CcccccccccEEEcccccccCcch
Q 044176           59 -PPPSTRAFLFSNNK-LFG-QIPPSIYSL------SSLEYISLSHNNLSGTIPP--CLGNFSTQLTILHLNNNYLQGRIP  127 (362)
Q Consensus        59 -~~~~L~~L~l~~~~-~~~-~~~~~~~~l------~~L~~L~L~~~~~~~~~~~--~l~~~~~~L~~L~l~~~~~~~~~~  127 (362)
                       .+++|++|++++|. +++ .+|..++++      ++|++|++++|+++ .+|.  .+..+ ++|++|++++|.+.+.+|
T Consensus       270 ~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l-~~L~~L~L~~N~l~g~ip  347 (636)
T 4eco_A          270 KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKM-KKLGMLECLYNQLEGKLP  347 (636)
T ss_dssp             TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTC-TTCCEEECCSCCCEEECC
T ss_pred             hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccC-CCCCEEeCcCCcCccchh
Confidence             48999999999998 887 788888876      99999999999999 8998  88887 799999999999987888


Q ss_pred             hhhhcCCCCccEEeccCCcccCCCchhhhcCCC-CcEEEccCCCCCCCcchhccCCC--CCCeEEccCCcCCCccccccc
Q 044176          128 DAFANGSCDLRSLGLNSNKLRGSFPRYLADCTG-LEVVNVGNNMIGDTFPSWLGSLP--GLKILVLRSNRFYGPLCEVNI  204 (362)
Q Consensus       128 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~n~~~~~~~~~~~  204 (362)
                       .+... ++|++|++++|.++ .+|..+..+++ |+.|++++|.++ .+|..+...+  +|++|++++|.+.+..+..+.
T Consensus       348 -~~~~l-~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~  423 (636)
T 4eco_A          348 -AFGSE-IKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFD  423 (636)
T ss_dssp             -CCEEE-EEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSC
T ss_pred             -hhCCC-CCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhc
Confidence             66554 89999999999999 78888999999 999999999997 6777776654  899999999999876655431


Q ss_pred             -----cccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccc----------cccceeeeecCcc-
Q 044176          205 -----MLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDY----------YQDSVTVTVKGRD-  268 (362)
Q Consensus       205 -----~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~-  268 (362)
                           ...+++|++|++++|.+. .+|...+..+++++.+++.++....++.....          ....+.+...... 
T Consensus       424 ~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~  502 (636)
T 4eco_A          424 PLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK  502 (636)
T ss_dssp             TTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCB
T ss_pred             ccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCc
Confidence                 115679999999999998 67777788899999999999876644432111          1111111111111 


Q ss_pred             --hHhh-hhcccccEEeccCcccCCCcchhhcCCCCCcEEEc------cCCcCccCchhhhhcCCCcCEEEccCCccccc
Q 044176          269 --LVLK-RIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNL------SHNGLTGSIPVSFANMIVLESLDLSSNKLHGR  339 (362)
Q Consensus       269 --~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l------~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~  339 (362)
                        .... ..+++|+.|++++|++++ +|..+..+++|+.|++      ++|++.+.+|..+..+++|++|++++|+++ .
T Consensus       503 lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~  580 (636)
T 4eco_A          503 LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-K  580 (636)
T ss_dssp             CCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-B
T ss_pred             cChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-c
Confidence              1111 246778888888888875 6777777888888888      456666777788888888888888888884 5


Q ss_pred             CchhhhhhHhhhccCCCccccCC
Q 044176          340 IPEQFVDAEICSSFARPDLYTNA  362 (362)
Q Consensus       340 ~~~~~~~l~~L~~l~~~~l~~n~  362 (362)
                      +|..+.  +.|+.|   ++++|+
T Consensus       581 ip~~~~--~~L~~L---~Ls~N~  598 (636)
T 4eco_A          581 VNEKIT--PNISVL---DIKDNP  598 (636)
T ss_dssp             CCSCCC--TTCCEE---ECCSCT
T ss_pred             cCHhHh--CcCCEE---ECcCCC
Confidence            666554  445554   666663

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.4e-35  Score=282.60  Aligned_cols=352  Identities=20%  Similarity=0.177  Sum_probs=226.9

Q ss_pred             CCCCcccccCCccccccCCCCcEEEcCCCccccccc---CCcCCCcEEEccCCcCCCC---CCCCCCCccEEEccCcccc
Q 044176            1 LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGT---ILVPPPSTRAFLFSNNKLF   74 (362)
Q Consensus         1 L~~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~---~~~~~L~~L~l~~n~~~~~---~~~~~~~L~~L~l~~~~~~   74 (362)
                      |++|+++ .+++..+..+++|+.|++++|.++.+.+   ..+++|++|++++|.+.+.   .+..+++|++|++++|.+.
T Consensus        40 Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~  118 (606)
T 3t6q_A           40 FSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGIS  118 (606)
T ss_dssp             CTTCCCS-EECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCS
T ss_pred             ccCCccC-cCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcc
Confidence            5788888 5666666667999999999998888866   4577889999999988754   3455888899999999888


Q ss_pred             cCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCcc--EEeccCCcccC---
Q 044176           75 GQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLR--SLGLNSNKLRG---  149 (362)
Q Consensus        75 ~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~--~L~l~~~~~~~---  149 (362)
                      ...+..++++++|++|++++|.+++.....+..+ ++|++|++++|.+.+..|..+... ++|+  ++++++|.+++   
T Consensus       119 ~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~l~L~l~~n~l~~~~~  196 (606)
T 3t6q_A          119 SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPT-EKLKVLDFQNNAIHYLSKEDMSSL-QQATNLSLNLNGNDIAGIEP  196 (606)
T ss_dssp             CGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCC-TTCCEEECCSSCCCEECHHHHHTT-TTCCSEEEECTTCCCCEECT
T ss_pred             cCCcchhccCCcccEEECCCCcccccCcccccCC-cccCEEEcccCcccccChhhhhhh-cccceeEEecCCCccCccCh
Confidence            7667778888899999999888874222333334 688888888888775445555443 5555  55555555443   


Q ss_pred             ------------------------------------------------------------------------CCchhhhc
Q 044176          150 ------------------------------------------------------------------------SFPRYLAD  157 (362)
Q Consensus       150 ------------------------------------------------------------------------~~~~~~~~  157 (362)
                                                                                              ..+..+..
T Consensus       197 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~  276 (606)
T 3t6q_A          197 GAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHC  276 (606)
T ss_dssp             TTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTT
T ss_pred             hHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhcc
Confidence                                                                                    22333555


Q ss_pred             CCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhh
Q 044176          158 CTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMK  237 (362)
Q Consensus       158 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~  237 (362)
                      +++|+.|++++|.++ .+|..+..+++|++|++++|.+.+..+..  +..+++|++|++++|.+.+..+...+..+++++
T Consensus       277 l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~  353 (606)
T 3t6q_A          277 FSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQIS--ASNFPSLTHLSIKGNTKRLELGTGCLENLENLR  353 (606)
T ss_dssp             CTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGC--GGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCC
T ss_pred             ccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhh--hhccCcCCEEECCCCCcccccchhhhhccCcCC
Confidence            566666666666664 34555666666666666666665533322  255666667777666666555555566667777


Q ss_pred             hccccCCCccccc---CCccccccceeeeecC-----cchHhhhhcccccEEeccCcccCCCcch-hhcCCCCCcEEEcc
Q 044176          238 NVDEKGSDGLYMQ---GEEDYYQDSVTVTVKG-----RDLVLKRIITIFTTIDLSSNQFQGEIPQ-VLGDFKSLIVLNLS  308 (362)
Q Consensus       238 ~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~-----~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~l~  308 (362)
                      .+++.++......   ...........+....     ........+++|+.|++++|.+++..+. .+..+++|+.|+++
T Consensus       354 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~  433 (606)
T 3t6q_A          354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS  433 (606)
T ss_dssp             EEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECT
T ss_pred             EEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECC
Confidence            7776666543332   1111111111111111     1122233467788888888877655443 36777888888888


Q ss_pred             CCcCccCchhhhhcCCCcCEEEccCCccccc---CchhhhhhHhhhccCCCccccC
Q 044176          309 HNGLTGSIPVSFANMIVLESLDLSSNKLHGR---IPEQFVDAEICSSFARPDLYTN  361 (362)
Q Consensus       309 ~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~---~~~~~~~l~~L~~l~~~~l~~n  361 (362)
                      +|.+.+..+..+..+++|++|++++|++++.   .+..+..+++|++|   ++++|
T Consensus       434 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L---~Ls~n  486 (606)
T 3t6q_A          434 HSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEIL---VLSFC  486 (606)
T ss_dssp             TCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEE---ECTTS
T ss_pred             CCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEE---ECCCC
Confidence            8888777777788888888888888887753   22456666666665   55554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=4e-35  Score=279.52  Aligned_cols=292  Identities=18%  Similarity=0.162  Sum_probs=221.0

Q ss_pred             CccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEe
Q 044176           62 STRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLG  141 (362)
Q Consensus        62 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  141 (362)
                      +++.+++++|.+.+..+..|.++++|++|++++|.++ .+|..+..+ ++|++|++++|.+....|..+... ++|++|+
T Consensus       255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~  331 (606)
T 3t6q_A          255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGL-STLKKLVLSANKFENLCQISASNF-PSLTHLS  331 (606)
T ss_dssp             EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSC-TTCCEEECTTCCCSBGGGGCGGGC-TTCSEEE
T ss_pred             ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhccc-ccCCEEECccCCcCcCchhhhhcc-CcCCEEE
Confidence            4666677777777666667888899999999999998 888888777 689999999998885556566654 8899999


Q ss_pred             ccCCcccCCCc-hhhhcCCCCcEEEccCCCCCCCc--chhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccC
Q 044176          142 LNSNKLRGSFP-RYLADCTGLEVVNVGNNMIGDTF--PSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSH  218 (362)
Q Consensus       142 l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~  218 (362)
                      +++|.+.+..+ ..+..+++|+.|++++|.+.+..  +..+..+++|++|++++|.+.+..+..  +..+++|++|++++
T Consensus       332 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~  409 (606)
T 3t6q_A          332 IKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA--FKECPQLELLDLAF  409 (606)
T ss_dssp             CCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTT--TTTCTTCSEEECTT
T ss_pred             CCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHH--hcCCccCCeEECCC
Confidence            99988775444 45788888999998888886654  566788888888888888876644443  36778888888888


Q ss_pred             CcccCCCchhHHhhhhhhhhccccCCCcccccC-CccccccceeeeecCcc--------hHhhhhcccccEEeccCcccC
Q 044176          219 NEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQG-EEDYYQDSVTVTVKGRD--------LVLKRIITIFTTIDLSSNQFQ  289 (362)
Q Consensus       219 n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------~~~~~~~~~L~~L~l~~n~~~  289 (362)
                      |.+.+..+...+..+++++.+++.++....... ..........+......        ......+++|+.|++++|.++
T Consensus       410 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~  489 (606)
T 3t6q_A          410 TRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS  489 (606)
T ss_dssp             CCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCC
T ss_pred             CcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccC
Confidence            888766665557778888888887775533221 11112222222222211        122445789999999999999


Q ss_pred             CCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhccCCCccccCC
Q 044176          290 GEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFARPDLYTNA  362 (362)
Q Consensus       290 ~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~~~~l~~n~  362 (362)
                      +..|..+..+++|+.|++++|++++..|..+..++.| +|++++|++++..|+.+..+++|+.+   ++++|+
T Consensus       490 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L---~l~~N~  558 (606)
T 3t6q_A          490 SIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTI---NLRQNP  558 (606)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEE---ECTTCC
T ss_pred             ccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEE---eCCCCC
Confidence            8888889999999999999999998889999999999 99999999998888888888777777   777774

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.3e-35  Score=273.18  Aligned_cols=332  Identities=18%  Similarity=0.218  Sum_probs=202.1

Q ss_pred             CCCcccccCCccccccCCCCcEEEcCCCccccccc---CCcCCCcEEEccCCcCCC----CCCCCCCCccEEEccCcccc
Q 044176            2 SNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQG----TILVPPPSTRAFLFSNNKLF   74 (362)
Q Consensus         2 ~~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~---~~~~~L~~L~l~~n~~~~----~~~~~~~~L~~L~l~~~~~~   74 (362)
                      +++.++ .+|. .   .++|+.|++++|.|+++.+   ..+++|++|++++|.+.+    ..+..+++|++|++++|.+.
T Consensus        18 ~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~   92 (455)
T 3v47_A           18 INRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL   92 (455)
T ss_dssp             CSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTC
T ss_pred             CCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccC
Confidence            345666 6666 2   2778888888888888755   467788888888887653    33555888888888888888


Q ss_pred             cCCcccccCCCCCCEEEcccCcccccCCCC--cccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCc
Q 044176           75 GQIPPSIYSLSSLEYISLSHNNLSGTIPPC--LGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFP  152 (362)
Q Consensus        75 ~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~--l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  152 (362)
                      +..|..|.++++|++|++++|.+++..+..  +..+ ++|++|++++|.+.+..|..+...+++|++|++++|.+++..+
T Consensus        93 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  171 (455)
T 3v47_A           93 QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPL-TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE  171 (455)
T ss_dssp             EECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTC-TTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCT
T ss_pred             ccChhhccCcccCCEEeCCCCCCCccccCcccccCc-ccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccCh
Confidence            777888888888888888888887433332  5555 6888888888888766666644445788888888888876666


Q ss_pred             hhhhcC--CCCcEEEccCCCCCCCcchh--------ccCCCCCCeEEccCCcCCCcccc---------------------
Q 044176          153 RYLADC--TGLEVVNVGNNMIGDTFPSW--------LGSLPGLKILVLRSNRFYGPLCE---------------------  201 (362)
Q Consensus       153 ~~~~~l--~~L~~L~l~~~~~~~~~~~~--------~~~~~~L~~L~l~~n~~~~~~~~---------------------  201 (362)
                      ..+..+  ..++.+++++|.+.+..+..        +..+++|++|++++|.+.+..+.                     
T Consensus       172 ~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~  251 (455)
T 3v47_A          172 EDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYN  251 (455)
T ss_dssp             TTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTT
T ss_pred             hhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccc
Confidence            666554  34444455444443322211        11233444444444443221110                     


Q ss_pred             ----------------ccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeec
Q 044176          202 ----------------VNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVK  265 (362)
Q Consensus       202 ----------------~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (362)
                                      ...-...++|+.+++++|.+.+..+.. +..+++|+.+++.++.......              
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~--------------  316 (455)
T 3v47_A          252 MGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSV-FSHFTDLEQLTLAQNEINKIDD--------------  316 (455)
T ss_dssp             TSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTT-TTTCTTCCEEECTTSCCCEECT--------------
T ss_pred             cccccchhhhccCcccccccccccCceEEEecCccccccchhh-cccCCCCCEEECCCCcccccCh--------------
Confidence                            000012246777777777776544443 5666777777776665332211              


Q ss_pred             CcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCchhhh
Q 044176          266 GRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFV  345 (362)
Q Consensus       266 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~  345 (362)
                          .....+++|+.|++++|.+++..+..+..+++|++|++++|++++..|..+..+++|++|++++|++++..+..|.
T Consensus       317 ----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  392 (455)
T 3v47_A          317 ----NAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFD  392 (455)
T ss_dssp             ----TTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred             ----hHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhc
Confidence                0111245566666666666555555566666666666666666655556666666666666666666654444455


Q ss_pred             hhHhhhccCCCccccC
Q 044176          346 DAEICSSFARPDLYTN  361 (362)
Q Consensus       346 ~l~~L~~l~~~~l~~n  361 (362)
                      .+++|++|   ++++|
T Consensus       393 ~l~~L~~L---~l~~N  405 (455)
T 3v47_A          393 RLTSLQKI---WLHTN  405 (455)
T ss_dssp             TCTTCCEE---ECCSS
T ss_pred             cCCcccEE---EccCC
Confidence            55555554   44444

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.2e-34  Score=268.32  Aligned_cols=310  Identities=20%  Similarity=0.181  Sum_probs=223.6

Q ss_pred             CCCcccccCCccccccCCCCcEEEcCCCccccccc---CCcCCCcEEEccCCcCCCC---CCCCCCCccEEEccCccccc
Q 044176            2 SNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGT---ILVPPPSTRAFLFSNNKLFG   75 (362)
Q Consensus         2 ~~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~---~~~~~L~~L~l~~n~~~~~---~~~~~~~L~~L~l~~~~~~~   75 (362)
                      ++++++ .+|..+.   ++++.|++++|+|+.+++   ..+++|+.|++++|.+.+.   .+..+++|++|++++|.+..
T Consensus        19 ~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~   94 (477)
T 2id5_A           19 HRKRFV-AVPEGIP---TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL   94 (477)
T ss_dssp             CSCCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred             CCCCcC-cCCCCCC---CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCc
Confidence            345666 6777654   678888888888888765   3567888888888887754   34557888888888888886


Q ss_pred             CCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhh
Q 044176           76 QIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYL  155 (362)
Q Consensus        76 ~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  155 (362)
                      ..+..|.++++|++|++++|.+.+..+..+..+ ++|++|++++|.+....+..+... ++|++|++++|.+++..+..+
T Consensus        95 ~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~l  172 (477)
T 2id5_A           95 IPLGVFTGLSNLTKLDISENKIVILLDYMFQDL-YNLKSLEVGDNDLVYISHRAFSGL-NSLEQLTLEKCNLTSIPTEAL  172 (477)
T ss_dssp             CCTTSSTTCTTCCEEECTTSCCCEECTTTTTTC-TTCCEEEECCTTCCEECTTSSTTC-TTCCEEEEESCCCSSCCHHHH
T ss_pred             cCcccccCCCCCCEEECCCCccccCChhHcccc-ccCCEEECCCCccceeChhhccCC-CCCCEEECCCCcCcccChhHh
Confidence            666677888888888888888875455556555 688888888888875555565544 788888888888886666678


Q ss_pred             hcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhh
Q 044176          156 ADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLET  235 (362)
Q Consensus       156 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~  235 (362)
                      ..+++|+.|++++|.+.+..+..+..+++|++|++++|...+..+...  ....+|+.|++++|.+. ..+...+..+++
T Consensus       173 ~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~  249 (477)
T 2id5_A          173 SHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC--LYGLNLTSLSITHCNLT-AVPYLAVRHLVY  249 (477)
T ss_dssp             TTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTT--TTTCCCSEEEEESSCCC-SCCHHHHTTCTT
T ss_pred             cccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccc--ccCccccEEECcCCccc-ccCHHHhcCccc
Confidence            888888888888888876666677888888888888877665444332  23447888888888887 555555677777


Q ss_pred             hhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccC
Q 044176          236 MKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGS  315 (362)
Q Consensus       236 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~  315 (362)
                      |+.+++.++.......                  .....+++|+.|++++|.+++..+..+..+++|+.|++++|++++.
T Consensus       250 L~~L~Ls~n~l~~~~~------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  311 (477)
T 2id5_A          250 LRFLNLSYNPISTIEG------------------SMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTL  311 (477)
T ss_dssp             CCEEECCSSCCCEECT------------------TSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCC
T ss_pred             cCeeECCCCcCCccCh------------------hhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCcee
Confidence            7777777665332221                  1112256777777777777766677777777777788877777766


Q ss_pred             chhhhhcCCCcCEEEccCCcccc
Q 044176          316 IPVSFANMIVLESLDLSSNKLHG  338 (362)
Q Consensus       316 ~~~~~~~~~~L~~L~l~~n~~~~  338 (362)
                      .+..|..+++|++|++++|++..
T Consensus       312 ~~~~~~~l~~L~~L~l~~N~l~c  334 (477)
T 2id5_A          312 EESVFHSVGNLETLILDSNPLAC  334 (477)
T ss_dssp             CGGGBSCGGGCCEEECCSSCEEC
T ss_pred             CHhHcCCCcccCEEEccCCCccC
Confidence            66667777777788887777764

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=3.7e-35  Score=279.79  Aligned_cols=353  Identities=22%  Similarity=0.216  Sum_probs=195.6

Q ss_pred             CCCCcccccCCccccccCCCCcEEEcCCCccccccc---CCcCCCcEEEccCCcCCCCC---CCCCCCccEEEccCcccc
Q 044176            1 LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGTI---LVPPPSTRAFLFSNNKLF   74 (362)
Q Consensus         1 L~~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~---~~~~~L~~L~l~~n~~~~~~---~~~~~~L~~L~l~~~~~~   74 (362)
                      |++|+++ .+++..+..+++|+.|++++|.++.+++   ..+++|++|++++|.+.+..   +..+++|++|++++|.+.
T Consensus        39 Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~  117 (606)
T 3vq2_A           39 LSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA  117 (606)
T ss_dssp             CTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCC
T ss_pred             CCCCCcC-EeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccc
Confidence            4667777 4555555566777777777777777755   35567777777777776543   344777777777777777


Q ss_pred             cCCcccccCCCCCCEEEcccCcccc-cCCCCcccccccccEEEcccccccCcchhhhhcC--------------------
Q 044176           75 GQIPPSIYSLSSLEYISLSHNNLSG-TIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANG--------------------  133 (362)
Q Consensus        75 ~~~~~~~~~l~~L~~L~L~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~--------------------  133 (362)
                      ...+..++++++|++|++++|.+++ .+|..+..+ ++|++|++++|.+.+..+..+...                    
T Consensus       118 ~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~  196 (606)
T 3vq2_A          118 SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNL-TNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFI  196 (606)
T ss_dssp             CSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTC-TTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEE
T ss_pred             cccccccCCCCCCCEEeCCCCcccceechHhHhhc-CCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCccee
Confidence            6665667777777777777777763 356666666 577777777776653333222110                    


Q ss_pred             ------CCCccEEeccCCcccC----------------------------------------------------------
Q 044176          134 ------SCDLRSLGLNSNKLRG----------------------------------------------------------  149 (362)
Q Consensus       134 ------~~~L~~L~l~~~~~~~----------------------------------------------------------  149 (362)
                            ..+|++|++++|.+.+                                                          
T Consensus       197 ~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~  276 (606)
T 3vq2_A          197 QDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSD  276 (606)
T ss_dssp             CTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCG
T ss_pred             CcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccc
Confidence                  0123333333332210                                                          


Q ss_pred             ----------------------CCchhhhcCCCCcEEEccCCCCCCCcc--------------------hhccCCCCCCe
Q 044176          150 ----------------------SFPRYLADCTGLEVVNVGNNMIGDTFP--------------------SWLGSLPGLKI  187 (362)
Q Consensus       150 ----------------------~~~~~~~~l~~L~~L~l~~~~~~~~~~--------------------~~~~~~~~L~~  187 (362)
                                            .++ .+..+++|+.|++++|.+ +.+|                    ..+..+++|++
T Consensus       277 ~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~  354 (606)
T 3vq2_A          277 DIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSY  354 (606)
T ss_dssp             GGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCE
T ss_pred             cccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccC-cccccCCCCccceeeccCCcCccchhhccCCCCCE
Confidence                                  000 111222333333333322 1111                    01223344444


Q ss_pred             EEccCCcCCCccccc-----------------------cccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCC
Q 044176          188 LVLRSNRFYGPLCEV-----------------------NIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGS  244 (362)
Q Consensus       188 L~l~~n~~~~~~~~~-----------------------~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~  244 (362)
                      |++++|.+.+.....                       ..+..+++|+.|++++|.+.+..+...+..+++|+.+++.++
T Consensus       355 L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n  434 (606)
T 3vq2_A          355 LDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT  434 (606)
T ss_dssp             EECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTS
T ss_pred             EECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCC
Confidence            444444433221000                       123455666666666666665544344566666777766666


Q ss_pred             CcccccC-CccccccceeeeecCc------chHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCch
Q 044176          245 DGLYMQG-EEDYYQDSVTVTVKGR------DLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIP  317 (362)
Q Consensus       245 ~~~~~~~-~~~~~~~~~~~~~~~~------~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~  317 (362)
                      ....... ..........+.....      .......+++|+.|++++|.+++..|..+..+++|++|++++|++++..|
T Consensus       435 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  514 (606)
T 3vq2_A          435 NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS  514 (606)
T ss_dssp             CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEG
T ss_pred             CCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCH
Confidence            5433221 1111111111221111      11122346777778887777776667777777778888888887777667


Q ss_pred             hhhhcCCCcCEEEccCCcccccCchhhhhhH-hhhccCCCccccC
Q 044176          318 VSFANMIVLESLDLSSNKLHGRIPEQFVDAE-ICSSFARPDLYTN  361 (362)
Q Consensus       318 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~l~~~~l~~n  361 (362)
                      ..+..+++|++|++++|+++ .+|..+..++ +|+++   ++++|
T Consensus       515 ~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l---~l~~N  555 (606)
T 3vq2_A          515 SHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFF---NLTNN  555 (606)
T ss_dssp             GGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEE---ECCSC
T ss_pred             HHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEE---EccCC
Confidence            77777788888888888777 5666666664 35555   55555

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=6.3e-35  Score=283.76  Aligned_cols=343  Identities=17%  Similarity=0.221  Sum_probs=261.6

Q ss_pred             CCcccccCCccccccCCCCcEEEcCCCcccc------------------ccc--C--CcCCCcEEEccCCcCCCCCCC--
Q 044176            3 NNRIRGRISKSDSQRWKSLTYLDISNNFLTQ------------------IEQ--H--PWKNITVLNLQNNTIQGTILV--   58 (362)
Q Consensus         3 ~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~------------------~~~--~--~~~~L~~L~l~~n~~~~~~~~--   58 (362)
                      +|+++| +|.++.. +++|+.|++++|.++.                  +|.  .  .+++|+.|++++|.+.+..+.  
T Consensus       434 ~N~L~~-IP~~l~~-L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l  511 (876)
T 4ecn_A          434 TNRITF-ISKAIQR-LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL  511 (876)
T ss_dssp             SCEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGG
T ss_pred             cCcccc-hhHHHhc-CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHH
Confidence            588997 9987655 5999999999999998                  666  3  689999999999998776554  


Q ss_pred             -CCCCccEEEccCcc-ccc-CCcccccCCC-------CCCEEEcccCcccccCCC--CcccccccccEEEcccccccCcc
Q 044176           59 -PPPSTRAFLFSNNK-LFG-QIPPSIYSLS-------SLEYISLSHNNLSGTIPP--CLGNFSTQLTILHLNNNYLQGRI  126 (362)
Q Consensus        59 -~~~~L~~L~l~~~~-~~~-~~~~~~~~l~-------~L~~L~L~~~~~~~~~~~--~l~~~~~~L~~L~l~~~~~~~~~  126 (362)
                       .+++|++|++++|. +++ .+|..+++++       +|++|++++|.++ .+|.  .+..+ ++|++|++++|.+. .+
T Consensus       512 ~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L-~~L~~L~Ls~N~l~-~l  588 (876)
T 4ecn_A          512 YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKM-VKLGLLDCVHNKVR-HL  588 (876)
T ss_dssp             GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTC-TTCCEEECTTSCCC-BC
T ss_pred             hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcC-CCCCEEECCCCCcc-cc
Confidence             38999999999998 887 6787666655       9999999999999 8998  88887 79999999999998 78


Q ss_pred             hhhhhcCCCCccEEeccCCcccCCCchhhhcCCC-CcEEEccCCCCCCCcchhccCCC--CCCeEEccCCcCCCcccccc
Q 044176          127 PDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTG-LEVVNVGNNMIGDTFPSWLGSLP--GLKILVLRSNRFYGPLCEVN  203 (362)
Q Consensus       127 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~n~~~~~~~~~~  203 (362)
                      | .+.. +++|++|++++|.+. .+|..+..+++ |+.|++++|.+. .+|..+..++  +|+.|++++|.+.+..+...
T Consensus       589 p-~~~~-L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~  664 (876)
T 4ecn_A          589 E-AFGT-NVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS  664 (876)
T ss_dssp             C-CCCT-TSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCS
T ss_pred             h-hhcC-CCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccch
Confidence            8 5554 489999999999999 78888999999 999999999996 6677776654  49999999999987554332


Q ss_pred             ---ccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccc----------cccceeeeecC---c
Q 044176          204 ---IMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDY----------YQDSVTVTVKG---R  267 (362)
Q Consensus       204 ---~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~----------~~~~~~~~~~~---~  267 (362)
                         ....+++|+.|++++|.+. .+|...+..+++|+.|++.++....++.....          ....+.+....   .
T Consensus       665 ~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~l  743 (876)
T 4ecn_A          665 CSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSL  743 (876)
T ss_dssp             SCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCC
T ss_pred             hhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccc
Confidence               1124558999999999998 77888788899999999998866544432111          01111111111   1


Q ss_pred             chHhh-hhcccccEEeccCcccCCCcchhhcCCCCCcEEEccC------CcCccCchhhhhcCCCcCEEEccCCcccccC
Q 044176          268 DLVLK-RIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSH------NGLTGSIPVSFANMIVLESLDLSSNKLHGRI  340 (362)
Q Consensus       268 ~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~------n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~  340 (362)
                      ...+. ..+++|+.|++++|.+++ +|..+..+++|+.|+|++      |.+.+.+|..+..+++|+.|++++|++ +.+
T Consensus       744 p~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~I  821 (876)
T 4ecn_A          744 SDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKV  821 (876)
T ss_dssp             CGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBC
T ss_pred             hHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-Ccc
Confidence            11111 246778888888888875 566677788888888865      666677777888888888888888888 467


Q ss_pred             chhhhhhHhhhccCCCccccCC
Q 044176          341 PEQFVDAEICSSFARPDLYTNA  362 (362)
Q Consensus       341 ~~~~~~l~~L~~l~~~~l~~n~  362 (362)
                      |..+.  ++|+.|   ++++|+
T Consensus       822 p~~l~--~~L~~L---dLs~N~  838 (876)
T 4ecn_A          822 DEKLT--PQLYIL---DIADNP  838 (876)
T ss_dssp             CSCCC--SSSCEE---ECCSCT
T ss_pred             CHhhc--CCCCEE---ECCCCC
Confidence            76654  344444   666663

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=2.7e-35  Score=281.16  Aligned_cols=320  Identities=17%  Similarity=0.173  Sum_probs=187.3

Q ss_pred             CCcccc-ccCCCCcEEEcCCCccccccc---CCcCCCcEEEccCCc-CCC-CCCCC---------CCCccEEEccCcccc
Q 044176           10 ISKSDS-QRWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNT-IQG-TILVP---------PPSTRAFLFSNNKLF   74 (362)
Q Consensus        10 ~~~~~~-~~~~~L~~L~ls~~~i~~~~~---~~~~~L~~L~l~~n~-~~~-~~~~~---------~~~L~~L~l~~~~~~   74 (362)
                      +|.++. ..+++|+.|++++|.+....+   ..+++|+.|++++|. +++ ..+..         +++|++|++++|.+.
T Consensus       239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~  318 (636)
T 4eco_A          239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK  318 (636)
T ss_dssp             TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred             CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence            666655 123777777777776554433   355667777777776 554 22221         266667777776666


Q ss_pred             cCCcc--cccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCC-ccEEeccCCcccCCC
Q 044176           75 GQIPP--SIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCD-LRSLGLNSNKLRGSF  151 (362)
Q Consensus        75 ~~~~~--~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~  151 (362)
                       .+|.  .++++++|++|++++|.+++.+| .+..+ ++|++|++++|.+. .+|..+... ++ |++|++++|.++ .+
T Consensus       319 -~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l-~~L~~L~L~~N~l~-~lp~~l~~l-~~~L~~L~Ls~N~l~-~l  392 (636)
T 4eco_A          319 -TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSE-IKLASLNLAYNQIT-EIPANFCGF-TEQVENLSFAHNKLK-YI  392 (636)
T ss_dssp             -SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEE-EEESEEECCSSEEE-ECCTTSEEE-CTTCCEEECCSSCCS-SC
T ss_pred             -ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCC-CCCCEEECCCCccc-cccHhhhhh-cccCcEEEccCCcCc-cc
Confidence             5555  66666667777776666665666 55554 46666666666665 555555543 45 666666666665 44


Q ss_pred             chhhhcCC--CCcEEEccCCCCCCCcchhcc-------CCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCccc
Q 044176          152 PRYLADCT--GLEVVNVGNNMIGDTFPSWLG-------SLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFT  222 (362)
Q Consensus       152 ~~~~~~l~--~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  222 (362)
                      |..+....  +|+.|++++|.+.+..|..+.       .+++|++|++++|.+.+.....  +..+++|++|++++|.+.
T Consensus       393 p~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~--~~~l~~L~~L~Ls~N~l~  470 (636)
T 4eco_A          393 PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKEL--FSTGSPLSSINLMGNMLT  470 (636)
T ss_dssp             CSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHH--HHTTCCCSEEECCSSCCS
T ss_pred             chhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHH--HccCCCCCEEECCCCCCC
Confidence            54444432  566666666665555554444       4455555555555555322211  133455555555555555


Q ss_pred             CCCchhHHhhh-------hhhhhccccCCCcccccCCcc--ccccceeeeec--Cc--chHhhhhcccccEEec------
Q 044176          223 GFLPRWIFVSL-------ETMKNVDEKGSDGLYMQGEED--YYQDSVTVTVK--GR--DLVLKRIITIFTTIDL------  283 (362)
Q Consensus       223 ~~~~~~~~~~~-------~~l~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~--~~~~~~~~~~L~~L~l------  283 (362)
                       .+|...+...       ++|+.+++.++....++....  .+.....+...  ..  .+.....+++|+.|++      
T Consensus       471 -~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~l  549 (636)
T 4eco_A          471 -EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDA  549 (636)
T ss_dssp             -BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCT
T ss_pred             -CcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCccc
Confidence             3333322222       255555555554433222111  11111111111  11  1112234789999999      


Q ss_pred             cCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCc
Q 044176          284 SSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIP  341 (362)
Q Consensus       284 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  341 (362)
                      ++|++.+.+|..+..+++|++|++++|.+. .+|..+.  ++|+.|++++|++....+
T Consensus       550 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~~~  604 (636)
T 4eco_A          550 QGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNISIDL  604 (636)
T ss_dssp             TCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCEEEC
T ss_pred             ccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCccccH
Confidence            567788889999999999999999999995 6777765  899999999998875443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.1e-34  Score=274.68  Aligned_cols=353  Identities=21%  Similarity=0.242  Sum_probs=212.9

Q ss_pred             CCCCcccccCCccccccCCCCcEEEcCCCccccccc---CCcCCCcEEEccCCcCCCC---CCCCCCCccEEEccCcccc
Q 044176            1 LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGT---ILVPPPSTRAFLFSNNKLF   74 (362)
Q Consensus         1 L~~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~---~~~~~L~~L~l~~n~~~~~---~~~~~~~L~~L~l~~~~~~   74 (362)
                      |++|.++ .+++..|..+++|+.|++++|+++.+++   ..+++|++|++++|.+.+.   .+..+++|++|++++|.+.
T Consensus        35 Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  113 (570)
T 2z63_A           35 LSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA  113 (570)
T ss_dssp             CCSCCCC-EECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred             ccCCccC-ccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccc
Confidence            5677777 5566566666888888888888887765   3567788888888877643   3455777778888777777


Q ss_pred             cCCcccccCCCCCCEEEcccCcccc-cCCCCcccccccccEEEcccccccCcchhhhhcC--------------------
Q 044176           75 GQIPPSIYSLSSLEYISLSHNNLSG-TIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANG--------------------  133 (362)
Q Consensus        75 ~~~~~~~~~l~~L~~L~L~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~--------------------  133 (362)
                      ...+..++++++|++|++++|.+++ .+|..+..+ ++|++|++++|.+....+..+...                    
T Consensus       114 ~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~  192 (570)
T 2z63_A          114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL-TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI  192 (570)
T ss_dssp             CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGC-TTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEE
T ss_pred             cCCCccccccccccEEecCCCccceecChhhhccc-CCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceec
Confidence            6555567777777777777777763 356666666 577777777776653333322211                    


Q ss_pred             --------------------------------------------------------------------------------
Q 044176          134 --------------------------------------------------------------------------------  133 (362)
Q Consensus       134 --------------------------------------------------------------------------------  133 (362)
                                                                                                      
T Consensus       193 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~  272 (570)
T 2z63_A          193 QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD  272 (570)
T ss_dssp             CTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEES
T ss_pred             CHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhh
Confidence                                                                                            


Q ss_pred             --------CCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchh-------------------ccCCCCCC
Q 044176          134 --------SCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSW-------------------LGSLPGLK  186 (362)
Q Consensus       134 --------~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-------------------~~~~~~L~  186 (362)
                              +++|++|++++|.+. .+|..+..+ +|+.|++++|.+.......                   ...+++|+
T Consensus       273 ~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~  350 (570)
T 2z63_A          273 DIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLE  350 (570)
T ss_dssp             CSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCC
T ss_pred             hchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCC
Confidence                    122333333333332 122222222 2333333333322110000                   03456777


Q ss_pred             eEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccC--Cccccccceeeee
Q 044176          187 ILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQG--EEDYYQDSVTVTV  264 (362)
Q Consensus       187 ~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~~~~~~~~~~~~  264 (362)
                      +|++++|.+.+.......+..+++|++|++++|.+.+..+ . +..+++++.+++.++.......  ..........+..
T Consensus       351 ~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l  428 (570)
T 2z63_A          351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-N-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI  428 (570)
T ss_dssp             EEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE-E-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEEC
T ss_pred             EEeCcCCccCccccccccccccCccCEEECCCCccccccc-c-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeC
Confidence            7777777665432111223556677777777776663332 2 5556666666666654332211  0111111111111


Q ss_pred             cC-----cchHhhhhcccccEEeccCcccC-CCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccc
Q 044176          265 KG-----RDLVLKRIITIFTTIDLSSNQFQ-GEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHG  338 (362)
Q Consensus       265 ~~-----~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~  338 (362)
                      ..     ........+++|+.|++++|.++ +..|..+..+++|+.|++++|++++..|..+..+++|++|++++|++++
T Consensus       429 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  508 (570)
T 2z63_A          429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS  508 (570)
T ss_dssp             TTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred             cCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCC
Confidence            11     11222334788999999999886 4577788888999999999999987778888889999999999999987


Q ss_pred             cCchhhhhhHhhhccCCCccccCC
Q 044176          339 RIPEQFVDAEICSSFARPDLYTNA  362 (362)
Q Consensus       339 ~~~~~~~~l~~L~~l~~~~l~~n~  362 (362)
                      ..|..|..+++|+.+   ++++|+
T Consensus       509 ~~~~~~~~l~~L~~L---~l~~N~  529 (570)
T 2z63_A          509 VPDGIFDRLTSLQKI---WLHTNP  529 (570)
T ss_dssp             CCTTTTTTCTTCCEE---ECCSSC
T ss_pred             CCHHHhhcccCCcEE---EecCCc
Confidence            777778877777776   666653

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=3e-33  Score=270.07  Aligned_cols=355  Identities=21%  Similarity=0.232  Sum_probs=213.9

Q ss_pred             CCCCcccccCCccccccCCCCcEEEcCCCccccccc---CCcCCCcEEEccCCcCCCCC---CCCCCCccEEEccCcccc
Q 044176            1 LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGTI---LVPPPSTRAFLFSNNKLF   74 (362)
Q Consensus         1 L~~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~---~~~~~L~~L~l~~n~~~~~~---~~~~~~L~~L~l~~~~~~   74 (362)
                      |++|.++ .++...+..+++|+.|++++|.++.+++   ..+++|+.|++++|.+....   +..+++|++|++++|.+.
T Consensus        32 Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~  110 (680)
T 1ziw_A           32 LTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ  110 (680)
T ss_dssp             CCSSCCC-CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC
T ss_pred             CCCCCCC-CcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccC
Confidence            5677888 5666666667888888888888887766   35678888888888776543   445788888888888887


Q ss_pred             cCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhc-CCCCccEEeccCCcccCCCch
Q 044176           75 GQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFAN-GSCDLRSLGLNSNKLRGSFPR  153 (362)
Q Consensus        75 ~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~  153 (362)
                      +..+..|+++++|++|++++|.+++..+..+..+ ++|++|++++|.+.+..+..+.. ..++|++|++++|.+++..+.
T Consensus       111 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~  189 (680)
T 1ziw_A          111 KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQL-ENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPG  189 (680)
T ss_dssp             CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCC-TTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTT
T ss_pred             ccChhHccccCCCCEEECCCCcccccCchhhccc-ccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChh
Confidence            7666778888888888888888875555555555 57777777777776444444321 124566666666655543332


Q ss_pred             ---------------------------------------------------hhhcCC--CCcEEEccCCCCCCCcchhcc
Q 044176          154 ---------------------------------------------------YLADCT--GLEVVNVGNNMIGDTFPSWLG  180 (362)
Q Consensus       154 ---------------------------------------------------~~~~l~--~L~~L~l~~~~~~~~~~~~~~  180 (362)
                                                                         .+..++  +|+.|++++|.+.+..+..++
T Consensus       190 ~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~  269 (680)
T 1ziw_A          190 CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA  269 (680)
T ss_dssp             GGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTT
T ss_pred             hhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCccccc
Confidence                                                               233332  266666666666555555666


Q ss_pred             CCCCCCeEEccCCcCCCcccccc-------------------------------ccccCCcccEEeccCCcccCCCchhH
Q 044176          181 SLPGLKILVLRSNRFYGPLCEVN-------------------------------IMLPFEALRIIDLSHNEFTGFLPRWI  229 (362)
Q Consensus       181 ~~~~L~~L~l~~n~~~~~~~~~~-------------------------------~~~~~~~L~~L~l~~n~~~~~~~~~~  229 (362)
                      .+++|++|++++|.+.+..+..+                               .+..+++|++|++++|.+.+..+. .
T Consensus       270 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~-~  348 (680)
T 1ziw_A          270 WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN-M  348 (680)
T ss_dssp             TCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTT-T
T ss_pred             CcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChh-H
Confidence            66777777777666554322211                               233445555556655555533322 2


Q ss_pred             HhhhhhhhhccccCCCc--ccccC--Ccccc-ccceee--e---ecCcchHhhhhcccccEEeccCcccCCCcc-hhhcC
Q 044176          230 FVSLETMKNVDEKGSDG--LYMQG--EEDYY-QDSVTV--T---VKGRDLVLKRIITIFTTIDLSSNQFQGEIP-QVLGD  298 (362)
Q Consensus       230 ~~~~~~l~~l~~~~~~~--~~~~~--~~~~~-~~~~~~--~---~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~  298 (362)
                      +..+++++.+++.++..  .....  ..... .....+  .   ...........+++|+.|++++|.+++.++ ..+.+
T Consensus       349 ~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~  428 (680)
T 1ziw_A          349 FTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRG  428 (680)
T ss_dssp             TTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTT
T ss_pred             hccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccC
Confidence            45556666666555431  01100  00000 000000  0   011111223345667777777777765443 45667


Q ss_pred             CCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCccc--ccCchhhhhhHhhhccCCCccccC
Q 044176          299 FKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLH--GRIPEQFVDAEICSSFARPDLYTN  361 (362)
Q Consensus       299 ~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~--~~~~~~~~~l~~L~~l~~~~l~~n  361 (362)
                      +++|++|++++|++.+..+..|..+++|++|++++|.++  +.+|..|..+++|++|   ++++|
T Consensus       429 l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L---~Ls~N  490 (680)
T 1ziw_A          429 LENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL---DLSNN  490 (680)
T ss_dssp             CTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEE---ECCSS
T ss_pred             cccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEE---ECCCC
Confidence            777777777777776666667777777777777777765  3566677777776666   55555

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=8.9e-34  Score=261.03  Aligned_cols=319  Identities=18%  Similarity=0.215  Sum_probs=235.2

Q ss_pred             CCCCcccccCCccccccCCCCcEEEcCCCccc-cccc---CCcCCCcEEEccCCcCCCC---CCCCCCCccEEEccCccc
Q 044176            1 LSNNRIRGRISKSDSQRWKSLTYLDISNNFLT-QIEQ---HPWKNITVLNLQNNTIQGT---ILVPPPSTRAFLFSNNKL   73 (362)
Q Consensus         1 L~~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~-~~~~---~~~~~L~~L~l~~n~~~~~---~~~~~~~L~~L~l~~~~~   73 (362)
                      |++|.+++ +++..+..+++|+.|++++|.+. .+++   ..+++|++|++++|.+.+.   .+..+++|++|++++|.+
T Consensus        37 Ls~n~i~~-~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l  115 (455)
T 3v47_A           37 LSLNSIAE-LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNL  115 (455)
T ss_dssp             CCSSCCCE-ECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             ecCCccCc-CChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCC
Confidence            57889984 54555556699999999999886 4433   4678899999999988764   345588999999999998


Q ss_pred             ccCCccc--ccCCCCCCEEEcccCcccccCCCC-cccccccccEEEcccccccCcchhhhhcC-CCCccEEeccCCcccC
Q 044176           74 FGQIPPS--IYSLSSLEYISLSHNNLSGTIPPC-LGNFSTQLTILHLNNNYLQGRIPDAFANG-SCDLRSLGLNSNKLRG  149 (362)
Q Consensus        74 ~~~~~~~--~~~l~~L~~L~L~~~~~~~~~~~~-l~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~  149 (362)
                      .+..+..  |.++++|++|++++|.+++..|.. +..+ ++|++|++++|.+.+..+..+... ...++.+++++|.+.+
T Consensus       116 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~  194 (455)
T 3v47_A          116 DGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNM-RRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQD  194 (455)
T ss_dssp             BTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGC-TTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTT
T ss_pred             CccccCcccccCcccCCEEECCCCccCccCcccccCCC-CcccEEeCCCCcccccChhhhhccccccccccccccCcccc
Confidence            8644444  888999999999999998555665 4455 789999999999886666555432 1345666666665553


Q ss_pred             CCchh--------hhcCCCCcEEEccCCCCCCCcchhc-------------------------------------c--CC
Q 044176          150 SFPRY--------LADCTGLEVVNVGNNMIGDTFPSWL-------------------------------------G--SL  182 (362)
Q Consensus       150 ~~~~~--------~~~l~~L~~L~l~~~~~~~~~~~~~-------------------------------------~--~~  182 (362)
                      ..+..        +..+++|+.|++++|.+.+..+..+                                     .  ..
T Consensus       195 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (455)
T 3v47_A          195 MNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEA  274 (455)
T ss_dssp             CSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTT
T ss_pred             cchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccc
Confidence            32221        1233455555555555543222211                                     1  23


Q ss_pred             CCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceee
Q 044176          183 PGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTV  262 (362)
Q Consensus       183 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~  262 (362)
                      ++|+++++++|.+.+..+..+  ..+++|++|++++|.+.+..+.. +..+++|+.+++.++......            
T Consensus       275 ~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~------------  339 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKSVF--SHFTDLEQLTLAQNEINKIDDNA-FWGLTHLLKLNLSQNFLGSID------------  339 (455)
T ss_dssp             SCCCEEECCSSCCCEECTTTT--TTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCCCEEC------------
T ss_pred             cCceEEEecCccccccchhhc--ccCCCCCEEECCCCcccccChhH-hcCcccCCEEECCCCccCCcC------------
Confidence            689999999998887555543  77889999999999998555544 678889999998887532211            


Q ss_pred             eecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCch
Q 044176          263 TVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPE  342 (362)
Q Consensus       263 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~  342 (362)
                            ......+++|+.|++++|++++..|..+..+++|++|++++|++++..+..+..+++|++|++++|+++...|.
T Consensus       340 ------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          340 ------SRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             ------GGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             ------hhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence                  12223378999999999999988888999999999999999999977777789999999999999999988773

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=5.8e-34  Score=277.01  Aligned_cols=350  Identities=15%  Similarity=0.152  Sum_probs=258.9

Q ss_pred             CCCCcccccCCccccccCCCCcEEEc-CCCccc-----------------------------------------------
Q 044176            1 LSNNRIRGRISKSDSQRWKSLTYLDI-SNNFLT-----------------------------------------------   32 (362)
Q Consensus         1 L~~n~~~~~~~~~~~~~~~~L~~L~l-s~~~i~-----------------------------------------------   32 (362)
                      |++|+++|.+|+++... ++|+.|++ ++|.+.                                               
T Consensus       330 Ls~~~L~G~ip~~l~~L-~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l  408 (876)
T 4ecn_A          330 LAGFGAKGRVPDAIGQL-TELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAI  408 (876)
T ss_dssp             CTTTCCEEEECGGGGGC-TTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHH
T ss_pred             CccCCCCCcCchHHhcc-ccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHh
Confidence            67899999999887765 99999999 666432                                               


Q ss_pred             ------------------------------cccc--CCcCCCcEEEccCCcCCCC-----------------CCC-----
Q 044176           33 ------------------------------QIEQ--HPWKNITVLNLQNNTIQGT-----------------ILV-----   58 (362)
Q Consensus        33 ------------------------------~~~~--~~~~~L~~L~l~~n~~~~~-----------------~~~-----   58 (362)
                                                    .+|.  ..+++|+.|++++|.+++.                 .+.     
T Consensus       409 ~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~  488 (876)
T 4ecn_A          409 NRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWS  488 (876)
T ss_dssp             HTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGG
T ss_pred             hhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhc
Confidence                                          2333  3567899999999988871                 222     


Q ss_pred             CCCCccEEEccCcccccCCcccccCCCCCCEEEcccCc-ccc-cCCCCccccc------ccccEEEcccccccCcchh--
Q 044176           59 PPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNN-LSG-TIPPCLGNFS------TQLTILHLNNNYLQGRIPD--  128 (362)
Q Consensus        59 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~-~~~-~~~~~l~~~~------~~L~~L~l~~~~~~~~~~~--  128 (362)
                      .+++|++|++++|.+.+.+|..|+++++|++|++++|+ +++ .+|..++.+.      ++|++|++++|.+. .+|.  
T Consensus       489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~  567 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASA  567 (876)
T ss_dssp             GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHH
T ss_pred             cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChh
Confidence            57889999999999888899999999999999999998 876 6777666551      38999999999988 7887  


Q ss_pred             hhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhccCCCC-CCeEEccCCcCCCcccccccccc
Q 044176          129 AFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPG-LKILVLRSNRFYGPLCEVNIMLP  207 (362)
Q Consensus       129 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~~~~~~  207 (362)
                      .+... ++|++|++++|.++ .+| .+..+++|+.|++++|.+. .+|..+..+++ |+.|++++|.+.. .+.......
T Consensus       568 ~l~~L-~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~-lp~~~~~~~  642 (876)
T 4ecn_A          568 SLQKM-VKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKS  642 (876)
T ss_dssp             HHTTC-TTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCS-CCSCCCTTC
T ss_pred             hhhcC-CCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCc-Cchhhhccc
Confidence            66654 89999999999988 667 8888999999999999986 67777888888 9999999998874 444443333


Q ss_pred             CCcccEEeccCCcccCCCchhH--H--hhhhhhhhccccCCCcccccCCcc-ccccceeeee--cCcc---hHhhh----
Q 044176          208 FEALRIIDLSHNEFTGFLPRWI--F--VSLETMKNVDEKGSDGLYMQGEED-YYQDSVTVTV--KGRD---LVLKR----  273 (362)
Q Consensus       208 ~~~L~~L~l~~n~~~~~~~~~~--~--~~~~~l~~l~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~---~~~~~----  273 (362)
                      .++|+.|++++|.+.+..|...  .  ....+|+.+++.++....++.... .......+..  ....   .....    
T Consensus       643 ~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~  722 (876)
T 4ecn_A          643 VYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDG  722 (876)
T ss_dssp             SSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTS
T ss_pred             cCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccc
Confidence            4559999999999876554321  1  133478888888876654332110 1111111111  1111   11111    


Q ss_pred             ---hcccccEEeccCcccCCCcchhhc--CCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccC------CcccccCch
Q 044176          274 ---IITIFTTIDLSSNQFQGEIPQVLG--DFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSS------NKLHGRIPE  342 (362)
Q Consensus       274 ---~~~~L~~L~l~~n~~~~~~~~~~~--~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~------n~~~~~~~~  342 (362)
                         .+++|+.|++++|+++ .+|..+.  .+++|+.|+|++|.+++ +|..+..+++|+.|++++      |++.+.+|.
T Consensus       723 ~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~  800 (876)
T 4ecn_A          723 NYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPT  800 (876)
T ss_dssp             CCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCT
T ss_pred             cccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChH
Confidence               1338999999999988 6677776  88999999999999986 688888999999999976      778888888


Q ss_pred             hhhhhHhhhccCCCccccCC
Q 044176          343 QFVDAEICSSFARPDLYTNA  362 (362)
Q Consensus       343 ~~~~l~~L~~l~~~~l~~n~  362 (362)
                      .|..+++|+.|   ++++|+
T Consensus       801 ~l~~L~~L~~L---~Ls~N~  817 (876)
T 4ecn_A          801 GITTCPSLIQL---QIGSND  817 (876)
T ss_dssp             TGGGCSSCCEE---ECCSSC
T ss_pred             HHhcCCCCCEE---ECCCCC
Confidence            88888877777   666664

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.7e-33  Score=268.31  Aligned_cols=349  Identities=16%  Similarity=0.146  Sum_probs=228.9

Q ss_pred             CCCcccccCCccccccCCCCcEEEcCCCccccccc---CCcCCCcEEEccCCcCCCCC---CCCCCCccEEEccCccccc
Q 044176            2 SNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGTI---LVPPPSTRAFLFSNNKLFG   75 (362)
Q Consensus         2 ~~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~---~~~~~L~~L~l~~n~~~~~~---~~~~~~L~~L~l~~~~~~~   75 (362)
                      +++.++ .+|..+.   ++++.|++++|.++++++   ..+++|++|++++|.+.+..   +..+++|++|++++|.+.+
T Consensus        19 ~~~~l~-~ip~~~~---~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~   94 (606)
T 3vq2_A           19 MDQKLS-KVPDDIP---SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS   94 (606)
T ss_dssp             TTSCCS-SCCTTSC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCC
T ss_pred             cCCCcc-cCCCCCC---CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccc
Confidence            567788 8898765   789999999999999987   46789999999999988653   4568999999999999998


Q ss_pred             CCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccC-cchhhhhcCCCCccEEeccCCcccCCCchh
Q 044176           76 QIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQG-RIPDAFANGSCDLRSLGLNSNKLRGSFPRY  154 (362)
Q Consensus        76 ~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  154 (362)
                      ..|..|+++++|++|++++|.+++..+..+..+ ++|++|++++|.+.+ .+|..+... ++|++|++++|.+++..+..
T Consensus        95 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~lp~~~~~l-~~L~~L~Ls~n~l~~~~~~~  172 (606)
T 3vq2_A           95 FSPGSFSGLTSLENLVAVETKLASLESFPIGQL-ITLKKLNVAHNFIHSCKLPAYFSNL-TNLVHVDLSYNYIQTITVND  172 (606)
T ss_dssp             CCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTC-TTCCEEECCSSCCCCCCCCGGGGTC-TTCCEEECCSSCCCEECTTT
T ss_pred             cChhhcCCcccCCEEEccCCccccccccccCCC-CCCCEEeCCCCcccceechHhHhhc-CCCCEEEccCCcceecChhh
Confidence            889999999999999999999984444667776 799999999999875 468888765 89999999999988655554


Q ss_pred             hhcCCCC----cEEEccCCCCCCCcch-----------------------------------------------------
Q 044176          155 LADCTGL----EVVNVGNNMIGDTFPS-----------------------------------------------------  177 (362)
Q Consensus       155 ~~~l~~L----~~L~l~~~~~~~~~~~-----------------------------------------------------  177 (362)
                      ++.+.+|    ..+++++|.+.+..+.                                                     
T Consensus       173 ~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~  252 (606)
T 3vq2_A          173 LQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEP  252 (606)
T ss_dssp             THHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCG
T ss_pred             hhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccCh
Confidence            4433322    2344443333211111                                                     


Q ss_pred             -------------------------------------------------hccCCCCCCeEEccCCcCCCcccc-------
Q 044176          178 -------------------------------------------------WLGSLPGLKILVLRSNRFYGPLCE-------  201 (362)
Q Consensus       178 -------------------------------------------------~~~~~~~L~~L~l~~n~~~~~~~~-------  201 (362)
                                                                       .+..+++|++|++++|.+.. .+.       
T Consensus       253 ~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~-lp~~~l~~L~  331 (606)
T 3vq2_A          253 SIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQ-FPTLDLPFLK  331 (606)
T ss_dssp             GGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSS-CCCCCCSSCC
T ss_pred             HHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcc-cccCCCCccc
Confidence                                                             23334456666666665522 111       


Q ss_pred             -----------ccccccCCcccEEeccCCcccCCC--chhHHhhhhhhhhccccCCCcccccCCccccccceeeeecC--
Q 044176          202 -----------VNIMLPFEALRIIDLSHNEFTGFL--PRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKG--  266 (362)
Q Consensus       202 -----------~~~~~~~~~L~~L~l~~n~~~~~~--~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--  266 (362)
                                 ...+..+++|++|++++|.+.+..  +. .+..+++++.+++..+.................+....  
T Consensus       332 ~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~  410 (606)
T 3vq2_A          332 SLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSY-SDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHST  410 (606)
T ss_dssp             EEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCH-HHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSE
T ss_pred             eeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhh-hhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCc
Confidence                       112345677778888877776442  33 35667777777777765433322111111111111110  


Q ss_pred             ----------------------------cchHhhhhcccccEEeccCcccCC-CcchhhcCCCCCcEEEccCCcCccCch
Q 044176          267 ----------------------------RDLVLKRIITIFTTIDLSSNQFQG-EIPQVLGDFKSLIVLNLSHNGLTGSIP  317 (362)
Q Consensus       267 ----------------------------~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~i~~~~~  317 (362)
                                                  ........+++|+.|++++|.+++ ..|..+..+++|+.|++++|++++..|
T Consensus       411 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  490 (606)
T 3vq2_A          411 LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW  490 (606)
T ss_dssp             EESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred             cCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccCh
Confidence                                        011112234556666666666654 245556666666666666666666666


Q ss_pred             hhhhcCCCcCEEEccCCcccccCchhhhhhHhhhccCCCccccC
Q 044176          318 VSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFARPDLYTN  361 (362)
Q Consensus       318 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~~~~l~~n  361 (362)
                      ..+..+++|++|++++|++++..|..|..+++|+.|   ++++|
T Consensus       491 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L---~l~~N  531 (606)
T 3vq2_A          491 GVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTL---DCSFN  531 (606)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEE---ECTTS
T ss_pred             hhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEE---ECCCC
Confidence            666667777777777777776666666666665555   55554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.4e-33  Score=265.70  Aligned_cols=350  Identities=18%  Similarity=0.182  Sum_probs=219.8

Q ss_pred             CCCCcccccCCccccccCCCCcEEEcCCCccccccc---CCcCCCcEEEccCCcCCCCC---CCCCCCccEEEccCcccc
Q 044176            1 LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGTI---LVPPPSTRAFLFSNNKLF   74 (362)
Q Consensus         1 L~~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~---~~~~~L~~L~l~~n~~~~~~---~~~~~~L~~L~l~~~~~~   74 (362)
                      |++|+++ .+++..+..+++|+.|++++|+++.+++   ..+++|++|++++|.+.+..   +..+++|++|++++|.+.
T Consensus        33 Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  111 (549)
T 2z81_A           33 LSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ  111 (549)
T ss_dssp             CCSSCCC-EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCS
T ss_pred             CcCCccC-ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCccc
Confidence            5677777 4444445556888888888888877765   35667788888888777544   345777777777777776


Q ss_pred             cC-CcccccCCCCCCEEEcccCcccccCC-CCcccccccccEEEcccccccCcchhhhh---------------------
Q 044176           75 GQ-IPPSIYSLSSLEYISLSHNNLSGTIP-PCLGNFSTQLTILHLNNNYLQGRIPDAFA---------------------  131 (362)
Q Consensus        75 ~~-~~~~~~~l~~L~~L~L~~~~~~~~~~-~~l~~~~~~L~~L~l~~~~~~~~~~~~~~---------------------  131 (362)
                      +. .|..++++++|++|++++|.+.+.++ ..+..+ ++|++|++++|.+.+..|..+.                     
T Consensus       112 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~  190 (549)
T 2z81_A          112 TLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL-TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEI  190 (549)
T ss_dssp             SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC-CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHH
T ss_pred             ccchhhhhhccCCccEEECCCCccccccCHhhhhcc-cccCeeeccCCcccccChhhhhccccCceEecccCcccccchh
Confidence            42 45567777777777777776332444 344444 5666676666666544443332                     


Q ss_pred             --cCCCCccEEeccCCcccCCC--ch-----------------------------h------------------------
Q 044176          132 --NGSCDLRSLGLNSNKLRGSF--PR-----------------------------Y------------------------  154 (362)
Q Consensus       132 --~~~~~L~~L~l~~~~~~~~~--~~-----------------------------~------------------------  154 (362)
                        ..+++|++|++++|.+++..  +.                             .                        
T Consensus       191 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~  270 (549)
T 2z81_A          191 FADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFN  270 (549)
T ss_dssp             HHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCC
T ss_pred             hHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccccccc
Confidence              23456666666666655320  00                             0                        


Q ss_pred             -----------------------------------hhcCCCCcEEEccCCCCCCCcchhc-cCCCCCCeEEccCCcCCCc
Q 044176          155 -----------------------------------LADCTGLEVVNVGNNMIGDTFPSWL-GSLPGLKILVLRSNRFYGP  198 (362)
Q Consensus       155 -----------------------------------~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~  198 (362)
                                                         +...++|+.|++++|.+. .+|..+ ..+++|++|++++|.+.+.
T Consensus       271 ~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~  349 (549)
T 2z81_A          271 PSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEE  349 (549)
T ss_dssp             CCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHH
T ss_pred             ccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccc
Confidence                                               011234455555555543 233333 4688888999998888764


Q ss_pred             ccc-ccccccCCcccEEeccCCcccCCCc-hhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcc--hHhhhh
Q 044176          199 LCE-VNIMLPFEALRIIDLSHNEFTGFLP-RWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRD--LVLKRI  274 (362)
Q Consensus       199 ~~~-~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  274 (362)
                      .+. ...+..+++|++|++++|.+.+..+ ...+..+++|+.+++.++....++...........+......  ......
T Consensus       350 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~  429 (549)
T 2z81_A          350 YLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCI  429 (549)
T ss_dssp             HHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTS
T ss_pred             cccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcccccchh
Confidence            332 1224667888889998888874322 134677888888888888655444322222222222222211  111112


Q ss_pred             cccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhccC
Q 044176          275 ITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFA  354 (362)
Q Consensus       275 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~  354 (362)
                      +++|+.|++++|++++..    ..+++|++|++++|+++ .+|. ...+++|++|++++|++++..|+.|..+++|+.+ 
T Consensus       430 ~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L-  502 (549)
T 2z81_A          430 PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKI-  502 (549)
T ss_dssp             CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEE-
T ss_pred             cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEE-
Confidence            357888888888887542    46788999999999988 4555 4678899999999999998777778887777776 


Q ss_pred             CCccccCC
Q 044176          355 RPDLYTNA  362 (362)
Q Consensus       355 ~~~l~~n~  362 (362)
                        ++++|+
T Consensus       503 --~l~~N~  508 (549)
T 2z81_A          503 --WLHTNP  508 (549)
T ss_dssp             --ECCSSC
T ss_pred             --EecCCC
Confidence              666663

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=6.2e-33  Score=267.84  Aligned_cols=346  Identities=22%  Similarity=0.227  Sum_probs=213.2

Q ss_pred             CCCCcccccCCccccccCCC--CcEEEcCCCccccccc---CCcCCCcEEEccCCcCCCCC---C---------------
Q 044176            1 LSNNRIRGRISKSDSQRWKS--LTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGTI---L---------------   57 (362)
Q Consensus         1 L~~n~~~~~~~~~~~~~~~~--L~~L~ls~~~i~~~~~---~~~~~L~~L~l~~n~~~~~~---~---------------   57 (362)
                      |++|.+++..|.. +..++.  |+.|++++|.++.+++   ..+++|+.|++++|.+.+..   +               
T Consensus       229 L~~n~l~~~~~~~-~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~  307 (680)
T 1ziw_A          229 LSNSQLSTTSNTT-FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSF  307 (680)
T ss_dssp             CTTSCCCEECTTT-TGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCB
T ss_pred             ccCCcccccChhH-hhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchh
Confidence            3456666433333 322233  6666666666666554   24556666666666554322   2               


Q ss_pred             ------------------CCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccc-cCCCCccc-c-cccccEEE
Q 044176           58 ------------------VPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSG-TIPPCLGN-F-STQLTILH  116 (362)
Q Consensus        58 ------------------~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~-~~~~~l~~-~-~~~L~~L~  116 (362)
                                        ..+++|++|++++|.+.+..+..|.++++|++|++++|.+.. .++...+. . .++|+.|+
T Consensus       308 ~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~  387 (680)
T 1ziw_A          308 TKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILN  387 (680)
T ss_dssp             CCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEE
T ss_pred             hhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEE
Confidence                              224455555555555555444555555555555555554321 11111111 1 02466666


Q ss_pred             cccccccCcchhhhhcCCCCccEEeccCCcccCCCc-hhhhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcC
Q 044176          117 LNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFP-RYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRF  195 (362)
Q Consensus       117 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~  195 (362)
                      +++|++.+..|..+... ++|++|++++|.+.+.++ ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus       388 L~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l  466 (680)
T 1ziw_A          388 LTKNKISKIESDAFSWL-GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVAL  466 (680)
T ss_dssp             CTTSCCCEECTTTTTTC-TTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCC
T ss_pred             CCCCCCCeEChhhhhCC-CCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccc
Confidence            66666654445444433 667777777776654333 4666677777777777766555566666677777777777766


Q ss_pred             CCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhc
Q 044176          196 YGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRII  275 (362)
Q Consensus       196 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (362)
                      .........+..+++|+.|++++|.+.+ .+...+..+++|+.+++.++....+.....          ..........+
T Consensus       467 ~~~~~~p~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~----------~~~~~~~~~~l  535 (680)
T 1ziw_A          467 KNVDSSPSPFQPLRNLTILDLSNNNIAN-INDDMLEGLEKLEILDLQHNNLARLWKHAN----------PGGPIYFLKGL  535 (680)
T ss_dssp             BCTTCSSCTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCGGGGSTTS----------TTSCCCTTTTC
T ss_pred             cccccCCcccccCCCCCEEECCCCCCCc-CChhhhccccccCEEeCCCCCccccchhhc----------cCCcchhhcCC
Confidence            4322222234677888888888888874 343446777888888888776443321100          00000112347


Q ss_pred             ccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCchhhh-hhHhhhccC
Q 044176          276 TIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFV-DAEICSSFA  354 (362)
Q Consensus       276 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~l~  354 (362)
                      ++|+.|++++|+++...+..+.++++|+.|++++|++++..+..|..+++|+.|++++|++++..+..+. .+++|+.+ 
T Consensus       536 ~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l-  614 (680)
T 1ziw_A          536 SHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTEL-  614 (680)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEE-
T ss_pred             CCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEE-
Confidence            8999999999999966666789999999999999999977677789999999999999999987777776 56666666 


Q ss_pred             CCccccCC
Q 044176          355 RPDLYTNA  362 (362)
Q Consensus       355 ~~~l~~n~  362 (362)
                        ++++|.
T Consensus       615 --~l~~N~  620 (680)
T 1ziw_A          615 --DMRFNP  620 (680)
T ss_dssp             --ECTTCC
T ss_pred             --EccCCC
Confidence              666663

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=1.5e-32  Score=243.92  Aligned_cols=301  Identities=22%  Similarity=0.288  Sum_probs=247.0

Q ss_pred             cCCCCcEEEcCCCccccccc-CCcCCCcEEEccCCcCCCCC-CCCCCCccEEEccCcccccCCcccccCCCCCCEEEccc
Q 044176           17 RWKSLTYLDISNNFLTQIEQ-HPWKNITVLNLQNNTIQGTI-LVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSH   94 (362)
Q Consensus        17 ~~~~L~~L~ls~~~i~~~~~-~~~~~L~~L~l~~n~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~   94 (362)
                      .+++|+.|+++++.++.++. ..+++|++|++++|.+.+.. +..+++|++|++++|.+...  +.+.++++|++|++++
T Consensus        42 ~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~  119 (347)
T 4fmz_A           42 ELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNE  119 (347)
T ss_dssp             HHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTT
T ss_pred             hcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEECcC
Confidence            46999999999999999886 67899999999999988654 56699999999999999853  4689999999999999


Q ss_pred             CcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCC
Q 044176           95 NNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDT  174 (362)
Q Consensus        95 ~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  174 (362)
                      |.++ .++. +..+ ++|++|++++|......+. +.. +++|++|++++|.+.+..+  +..+++|+.|++++|.+.+.
T Consensus       120 n~i~-~~~~-~~~l-~~L~~L~l~~n~~~~~~~~-~~~-l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~  192 (347)
T 4fmz_A          120 DNIS-DISP-LANL-TKMYSLNLGANHNLSDLSP-LSN-MTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI  192 (347)
T ss_dssp             SCCC-CCGG-GTTC-TTCCEEECTTCTTCCCCGG-GTT-CTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC
T ss_pred             Cccc-Cchh-hccC-CceeEEECCCCCCcccccc-hhh-CCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccc
Confidence            9998 5554 5555 7999999999965534443 544 4899999999999885433  88999999999999998665


Q ss_pred             cchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCcc
Q 044176          175 FPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEED  254 (362)
Q Consensus       175 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~  254 (362)
                      .+  +..+++|+.+++++|.+.+..+    +..+++|++|++++|.+.+..+   +..+++++.+++.++......    
T Consensus       193 ~~--~~~l~~L~~L~l~~n~l~~~~~----~~~~~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~----  259 (347)
T 4fmz_A          193 SP--LASLTSLHYFTAYVNQITDITP----VANMTRLNSLKIGNNKITDLSP---LANLSQLTWLEIGTNQISDIN----  259 (347)
T ss_dssp             GG--GGGCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCG----
T ss_pred             cc--ccCCCccceeecccCCCCCCch----hhcCCcCCEEEccCCccCCCcc---hhcCCCCCEEECCCCccCCCh----
Confidence            43  7889999999999998876443    4778999999999999985444   678889999998887533221    


Q ss_pred             ccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCC
Q 044176          255 YYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSN  334 (362)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n  334 (362)
                                      ....+++|+.|++++|.+++.  ..+..+++|+.|++++|.+++..+..+..+++|++|++++|
T Consensus       260 ----------------~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  321 (347)
T 4fmz_A          260 ----------------AVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN  321 (347)
T ss_dssp             ----------------GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSS
T ss_pred             ----------------hHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCC
Confidence                            122378999999999999864  45788999999999999999888899999999999999999


Q ss_pred             cccccCchhhhhhHhhhccCCCccccCC
Q 044176          335 KLHGRIPEQFVDAEICSSFARPDLYTNA  362 (362)
Q Consensus       335 ~~~~~~~~~~~~l~~L~~l~~~~l~~n~  362 (362)
                      ++++..|  +..+++|+++   ++++|+
T Consensus       322 ~l~~~~~--~~~l~~L~~L---~l~~N~  344 (347)
T 4fmz_A          322 HITDIRP--LASLSKMDSA---DFANQV  344 (347)
T ss_dssp             SCCCCGG--GGGCTTCSEE---SSSCC-
T ss_pred             ccccccC--hhhhhcccee---ehhhhc
Confidence            9997555  6667666666   777774

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.5e-33  Score=263.76  Aligned_cols=326  Identities=18%  Similarity=0.214  Sum_probs=183.0

Q ss_pred             CCCCcccccCCccccccCCCCcEEEcCCCccccccc---CCcCCCcEEEccCCcCCCCCCCCCCCccEEEccCccccc-C
Q 044176            1 LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFG-Q   76 (362)
Q Consensus         1 L~~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~---~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~~~~~~-~   76 (362)
                      |++|+++ .+++..+..+++|+.|++++|+++++.+   ..+++|++|++++|.++......+++|++|++++|.+.+ .
T Consensus        28 Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~l~~L~~L~L~~N~l~~~~  106 (520)
T 2z7x_B           28 ISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSFNAFDALP  106 (520)
T ss_dssp             CCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECCCCCCCSEEECCSSCCSSCC
T ss_pred             CCCCccc-ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCccccCCccEEeccCCcccccc
Confidence            3455555 3444444444666666666666665543   345566666666666554333356666666666666654 2


Q ss_pred             CcccccCCCCCCEEEcccCcccccCCCCcccccccc--cEEEcccccc--cCcchhhhhcC-------------------
Q 044176           77 IPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQL--TILHLNNNYL--QGRIPDAFANG-------------------  133 (362)
Q Consensus        77 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L--~~L~l~~~~~--~~~~~~~~~~~-------------------  133 (362)
                      +|..|+++++|++|++++|.+++   ..+..+ ++|  ++|++++|.+  .+..|..+...                   
T Consensus       107 ~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l-~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~  182 (520)
T 2z7x_B          107 ICKEFGNMSQLKFLGLSTTHLEK---SSVLPI-AHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFIL  182 (520)
T ss_dssp             CCGGGGGCTTCCEEEEEESSCCG---GGGGGG-TTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCC
T ss_pred             chhhhccCCcceEEEecCcccch---hhcccc-ccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhh
Confidence            45566666666666666666552   122222 334  5555555544  22222222210                   


Q ss_pred             ---------------------------------------------------------------CCCccEEeccCCcccCC
Q 044176          134 ---------------------------------------------------------------SCDLRSLGLNSNKLRGS  150 (362)
Q Consensus       134 ---------------------------------------------------------------~~~L~~L~l~~~~~~~~  150 (362)
                                                                                     .++|++|++++|.+++.
T Consensus       183 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  262 (520)
T 2z7x_B          183 DVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQ  262 (520)
T ss_dssp             CCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESC
T ss_pred             hhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCc
Confidence                                                                           02455555555555544


Q ss_pred             Cchhh-----hcCCCCcEEEccCCCC--------------------------CCCcchhccCCCCCCeEEccCCcCCCcc
Q 044176          151 FPRYL-----ADCTGLEVVNVGNNMI--------------------------GDTFPSWLGSLPGLKILVLRSNRFYGPL  199 (362)
Q Consensus       151 ~~~~~-----~~l~~L~~L~l~~~~~--------------------------~~~~~~~~~~~~~L~~L~l~~n~~~~~~  199 (362)
                      +|..+     ..++.|+.+++++|.+                          ....  ....+++|++|++++|.+.+..
T Consensus       263 ~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~  340 (520)
T 2z7x_B          263 LDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTV  340 (520)
T ss_dssp             CCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTT
T ss_pred             cccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhh
Confidence            44444     3333333333333332                          1110  0157788999999999888755


Q ss_pred             ccccccccCCcccEEeccCCcccC--CCchhHHhhhhhhhhccccCCCccc-ccCCccccccceeeeecCcchHhhhhcc
Q 044176          200 CEVNIMLPFEALRIIDLSHNEFTG--FLPRWIFVSLETMKNVDEKGSDGLY-MQGEEDYYQDSVTVTVKGRDLVLKRIIT  276 (362)
Q Consensus       200 ~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (362)
                      +..+  ..+++|++|++++|.+.+  ..+ ..+..+++|+.+++.++.... ++..                  ....++
T Consensus       341 ~~~~--~~l~~L~~L~L~~N~l~~l~~~~-~~~~~l~~L~~L~Ls~N~l~~~l~~~------------------~~~~l~  399 (520)
T 2z7x_B          341 FENC--GHLTELETLILQMNQLKELSKIA-EMTTQMKSLQQLDISQNSVSYDEKKG------------------DCSWTK  399 (520)
T ss_dssp             TTTC--CCCSSCCEEECCSSCCCBHHHHH-HHHTTCTTCCEEECCSSCCBCCGGGC------------------SCCCCT
T ss_pred             hhhh--ccCCCCCEEEccCCccCccccch-HHHhhCCCCCEEECCCCcCCcccccc------------------hhccCc
Confidence            5443  778899999999998874  222 236778888888888876443 2210                  011145


Q ss_pred             cccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCchh-hhhhHhhhccCC
Q 044176          277 IFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQ-FVDAEICSSFAR  355 (362)
Q Consensus       277 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~l~~  355 (362)
                      +|+.|++++|.+++..+..+.  ++|+.|++++|+++ .+|..+..+++|++|++++|+++. +|.. |..+++|+++  
T Consensus       400 ~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L--  473 (520)
T 2z7x_B          400 SLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKI--  473 (520)
T ss_dssp             TCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEE--
T ss_pred             cCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEE--
Confidence            667777777766655544432  56777777777766 556655567777777777777763 4443 5555555555  


Q ss_pred             CccccC
Q 044176          356 PDLYTN  361 (362)
Q Consensus       356 ~~l~~n  361 (362)
                       ++++|
T Consensus       474 -~l~~N  478 (520)
T 2z7x_B          474 -WLHTN  478 (520)
T ss_dssp             -ECCSS
T ss_pred             -ECcCC
Confidence             55554

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=2.8e-33  Score=264.24  Aligned_cols=155  Identities=20%  Similarity=0.268  Sum_probs=84.0

Q ss_pred             cCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCc-hhHHhhhhhhhhccccCCCccc-ccCCccccc
Q 044176          180 GSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLP-RWIFVSLETMKNVDEKGSDGLY-MQGEEDYYQ  257 (362)
Q Consensus       180 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~  257 (362)
                      ..+++|++|++++|.+.+..+..  +..+++|++|++++|.+.+... ...+..+++++.+++.++.... +...     
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-----  422 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQG--CSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR-----  422 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTT--CCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSC-----
T ss_pred             cCCCCceEEECCCCccccchhhh--hcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChh-----
Confidence            45667777777777776644433  2666777777777777764221 1225566777777777665332 1110     


Q ss_pred             cceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCccc
Q 044176          258 DSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLH  337 (362)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~  337 (362)
                                   ....+++|+.|++++|++++..+..+.  ++|+.|++++|+++ .+|..+..+++|++|++++|+++
T Consensus       423 -------------~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~  486 (562)
T 3a79_B          423 -------------TCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK  486 (562)
T ss_dssp             -------------CCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC
T ss_pred             -------------hhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC
Confidence                         011145566666666665544433322  45666666666665 34444445666666666666666


Q ss_pred             ccCchh-hhhhHhhhccCCCccccC
Q 044176          338 GRIPEQ-FVDAEICSSFARPDLYTN  361 (362)
Q Consensus       338 ~~~~~~-~~~l~~L~~l~~~~l~~n  361 (362)
                       .+|.. |..+++|+.+   ++++|
T Consensus       487 -~l~~~~~~~l~~L~~L---~l~~N  507 (562)
T 3a79_B          487 -SVPDGVFDRLTSLQYI---WLHDN  507 (562)
T ss_dssp             -CCCTTSTTTCTTCCCE---ECCSC
T ss_pred             -CCCHHHHhcCCCCCEE---EecCC
Confidence             34433 4444444443   44444

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=7.3e-33  Score=256.37  Aligned_cols=316  Identities=17%  Similarity=0.147  Sum_probs=266.5

Q ss_pred             CcEEEcCCCcccccccCCcCCCcEEEccCCcCCCC---CCCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcc
Q 044176           21 LTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGT---ILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNL   97 (362)
Q Consensus        21 L~~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~   97 (362)
                      -+.+++++++++.+|....++++.|++++|.+.+.   .+..+++|++|++++|.+.+..|.+|.++++|++|++++|.+
T Consensus        13 ~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l   92 (477)
T 2id5_A           13 DRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL   92 (477)
T ss_dssp             TTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC
Confidence            46799999999999987778999999999999864   456699999999999999988899999999999999999999


Q ss_pred             cccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcch
Q 044176           98 SGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPS  177 (362)
Q Consensus        98 ~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  177 (362)
                      + .+|...+...++|++|++++|.+....+..+... ++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+.
T Consensus        93 ~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  170 (477)
T 2id5_A           93 K-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDL-YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE  170 (477)
T ss_dssp             C-SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTC-TTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred             C-ccCcccccCCCCCCEEECCCCccccCChhHcccc-ccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence            9 6776543333799999999999986666666654 8999999999999877788999999999999999999887777


Q ss_pred             hccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccc
Q 044176          178 WLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQ  257 (362)
Q Consensus       178 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  257 (362)
                      .+..+++|+.|++++|.+.+..+.  .+..+++|+.|++++|...+..+...+. ..+|+.+++.++....         
T Consensus       171 ~l~~l~~L~~L~l~~n~i~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~---------  238 (477)
T 2id5_A          171 ALSHLHGLIVLRLRHLNINAIRDY--SFKRLYRLKVLEISHWPYLDTMTPNCLY-GLNLTSLSITHCNLTA---------  238 (477)
T ss_dssp             HHTTCTTCCEEEEESCCCCEECTT--CSCSCTTCCEEEEECCTTCCEECTTTTT-TCCCSEEEEESSCCCS---------
T ss_pred             HhcccCCCcEEeCCCCcCcEeChh--hcccCcccceeeCCCCccccccCccccc-CccccEEECcCCcccc---------
Confidence            899999999999999998764443  3478899999999998877666655433 3478888887774322         


Q ss_pred             cceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCccc
Q 044176          258 DSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLH  337 (362)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~  337 (362)
                               ........+++|+.|++++|.+++..+..+..+++|++|++++|++++..+..|..+++|++|++++|+++
T Consensus       239 ---------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  309 (477)
T 2id5_A          239 ---------VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT  309 (477)
T ss_dssp             ---------CCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCS
T ss_pred             ---------cCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCc
Confidence                     12223344789999999999999877888999999999999999999888999999999999999999999


Q ss_pred             ccCchhhhhhHhhhccCCCccccCC
Q 044176          338 GRIPEQFVDAEICSSFARPDLYTNA  362 (362)
Q Consensus       338 ~~~~~~~~~l~~L~~l~~~~l~~n~  362 (362)
                      +..+..|..+++|+.|   ++++|.
T Consensus       310 ~~~~~~~~~l~~L~~L---~l~~N~  331 (477)
T 2id5_A          310 TLEESVFHSVGNLETL---ILDSNP  331 (477)
T ss_dssp             CCCGGGBSCGGGCCEE---ECCSSC
T ss_pred             eeCHhHcCCCcccCEE---EccCCC
Confidence            7777778888888877   667763

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.2e-32  Score=260.50  Aligned_cols=349  Identities=19%  Similarity=0.205  Sum_probs=247.9

Q ss_pred             CCcccccCCccccccCCCCcEEEcCCCccccccc---CCcCCCcEEEccCCcCCCCC---CCCCCCccEEEccCcccccC
Q 044176            3 NNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGTI---LVPPPSTRAFLFSNNKLFGQ   76 (362)
Q Consensus         3 ~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~---~~~~~L~~L~l~~n~~~~~~---~~~~~~L~~L~l~~~~~~~~   76 (362)
                      +.+++ .+|..+.   ++++.|++++|.++++++   ..+++|++|++++|.+.+..   +..+++|++|++++|.+...
T Consensus        16 ~~~l~-~ip~~l~---~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~   91 (570)
T 2z63_A           16 ELNFY-KIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL   91 (570)
T ss_dssp             SSCCS-SCCSSSC---SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred             CCCcc-ccCCCcc---ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCcc
Confidence            44667 7887554   689999999999999876   46889999999999988643   55689999999999999988


Q ss_pred             CcccccCCCCCCEEEcccCcccccCCC-CcccccccccEEEcccccccC-cchhhhhcCCCCccEEeccCCcccCCCchh
Q 044176           77 IPPSIYSLSSLEYISLSHNNLSGTIPP-CLGNFSTQLTILHLNNNYLQG-RIPDAFANGSCDLRSLGLNSNKLRGSFPRY  154 (362)
Q Consensus        77 ~~~~~~~l~~L~~L~L~~~~~~~~~~~-~l~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  154 (362)
                      .+..|.++++|++|++++|.++ .++. .+..+ ++|++|++++|.+.. .+|..+... ++|++|++++|.+++..+..
T Consensus        92 ~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l-~~L~~L~L~~n~l~~~~lp~~~~~l-~~L~~L~l~~n~l~~~~~~~  168 (570)
T 2z63_A           92 ALGAFSGLSSLQKLVAVETNLA-SLENFPIGHL-KTLKELNVAHNLIQSFKLPEYFSNL-TNLEHLDLSSNKIQSIYCTD  168 (570)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCC-CSTTCSCTTC-TTCCEEECCSSCCCCCCCCGGGGGC-TTCCEEECTTSCCCEECGGG
T ss_pred             CHhhhcCccccccccccccccc-cCCCcccccc-ccccEEecCCCccceecChhhhccc-CCCCEEeCcCCccceecHHH
Confidence            8889999999999999999998 5554 56666 799999999999875 368888765 89999999999988666666


Q ss_pred             hhcCCCC----cEEEccCCCCCCCcc------------------------------------------------------
Q 044176          155 LADCTGL----EVVNVGNNMIGDTFP------------------------------------------------------  176 (362)
Q Consensus       155 ~~~l~~L----~~L~l~~~~~~~~~~------------------------------------------------------  176 (362)
                      ++.+++|    +.+++++|.+.+..+                                                      
T Consensus       169 ~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~  248 (570)
T 2z63_A          169 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK  248 (570)
T ss_dssp             GHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCT
T ss_pred             ccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcch
Confidence            6666655    566666655432221                                                      


Q ss_pred             ---------------------------hhccCCCCCCeEEccCCcCCCcccccc--------------------------
Q 044176          177 ---------------------------SWLGSLPGLKILVLRSNRFYGPLCEVN--------------------------  203 (362)
Q Consensus       177 ---------------------------~~~~~~~~L~~L~l~~n~~~~~~~~~~--------------------------  203 (362)
                                                 ..+..+++|++|++++|.+.+......                          
T Consensus       249 ~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~  328 (570)
T 2z63_A          249 SALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLK  328 (570)
T ss_dssp             TTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCC
T ss_pred             hhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccC
Confidence                                       122234455555555554432111000                          


Q ss_pred             -------------ccccCCcccEEeccCCcccCCCc-hhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCc--
Q 044176          204 -------------IMLPFEALRIIDLSHNEFTGFLP-RWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGR--  267 (362)
Q Consensus       204 -------------~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  267 (362)
                                   ....+++|++|++++|.+.+... ...+..+++++.+++.++.................+.....  
T Consensus       329 ~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l  408 (570)
T 2z63_A          329 RLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL  408 (570)
T ss_dssp             EEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEE
T ss_pred             EEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCcc
Confidence                         00345566666666666653321 12355667777777777654433322111122222222111  


Q ss_pred             ----chHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCc-cCchhhhhcCCCcCEEEccCCcccccCch
Q 044176          268 ----DLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLT-GSIPVSFANMIVLESLDLSSNKLHGRIPE  342 (362)
Q Consensus       268 ----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~  342 (362)
                          .......+++|+.|++++|.+++..+..+..+++|+.|++++|.+. +.+|..+..+++|++|++++|++++..|.
T Consensus       409 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~  488 (570)
T 2z63_A          409 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT  488 (570)
T ss_dssp             ESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT
T ss_pred             ccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChh
Confidence                1123345788999999999998888888889999999999999987 46788899999999999999999988888


Q ss_pred             hhhhhHhhhccCCCccccC
Q 044176          343 QFVDAEICSSFARPDLYTN  361 (362)
Q Consensus       343 ~~~~l~~L~~l~~~~l~~n  361 (362)
                      .|..+++|++|   ++++|
T Consensus       489 ~~~~l~~L~~L---~l~~n  504 (570)
T 2z63_A          489 AFNSLSSLQVL---NMASN  504 (570)
T ss_dssp             TTTTCTTCCEE---ECCSS
T ss_pred             hhhcccCCCEE---eCCCC
Confidence            88888888877   55555

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.4e-31  Score=246.81  Aligned_cols=322  Identities=22%  Similarity=0.297  Sum_probs=176.9

Q ss_pred             CCCcccccCCccccccCCCCcEEEcCCCccccccc-CCcCCCcEEEccCCcCCCCC-CCCCCCccEEEccCcccccCCcc
Q 044176            2 SNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ-HPWKNITVLNLQNNTIQGTI-LVPPPSTRAFLFSNNKLFGQIPP   79 (362)
Q Consensus         2 ~~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~-~~~~~L~~L~l~~n~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~   79 (362)
                      +++.++ .+|.  +..+++|+.|++++|.++++++ ..+++|+.|++++|.+.+.. +..+++|++|++++|.+.+. + 
T Consensus        54 ~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~-~-  128 (466)
T 1o6v_A           54 DRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI-D-  128 (466)
T ss_dssp             CSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC-G-
T ss_pred             CCCCCc-cCcc--hhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCC-h-
Confidence            455666 4553  3445778888888877777765 46677777777777776543 44477777777777777654 2 


Q ss_pred             cccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCC
Q 044176           80 SIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCT  159 (362)
Q Consensus        80 ~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~  159 (362)
                      .+.++++|++|++++|.+. .++ .+..+ ++|++|++++ .+.. .+. +.. +++|++|++++|.+.+.  ..+..++
T Consensus       129 ~~~~l~~L~~L~l~~n~l~-~~~-~~~~l-~~L~~L~l~~-~~~~-~~~-~~~-l~~L~~L~l~~n~l~~~--~~l~~l~  199 (466)
T 1o6v_A          129 PLKNLTNLNRLELSSNTIS-DIS-ALSGL-TSLQQLSFGN-QVTD-LKP-LAN-LTTLERLDISSNKVSDI--SVLAKLT  199 (466)
T ss_dssp             GGTTCTTCSEEEEEEEEEC-CCG-GGTTC-TTCSEEEEEE-SCCC-CGG-GTT-CTTCCEEECCSSCCCCC--GGGGGCT
T ss_pred             HHcCCCCCCEEECCCCccC-CCh-hhccC-CcccEeecCC-cccC-chh-hcc-CCCCCEEECcCCcCCCC--hhhccCC
Confidence            2777777777777777776 333 23333 3444444432 2221 111 222 24555555555555422  2344555


Q ss_pred             CCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhc
Q 044176          160 GLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNV  239 (362)
Q Consensus       160 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l  239 (362)
                      +|+.|++++|.+.+..+  ++.+++|++|++++|.+.+.    ..+..+++|+.|++++|.+.+..+   +..+++|+.+
T Consensus       200 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~----~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L  270 (466)
T 1o6v_A          200 NLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI----GTLASLTNLTDLDLANNQISNLAP---LSGLTKLTEL  270 (466)
T ss_dssp             TCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC----GGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCSEE
T ss_pred             CCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc----hhhhcCCCCCEEECCCCccccchh---hhcCCCCCEE
Confidence            55555555555544332  34455555555555544432    112344455555555555443322   3344444555


Q ss_pred             cccCCCcccccCCccccccceeeeecC---cchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCc
Q 044176          240 DEKGSDGLYMQGEEDYYQDSVTVTVKG---RDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSI  316 (362)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~  316 (362)
                      ++.++........ ........+....   ........+++|+.|++++|.+++..+  +..+++|++|++++|.+++. 
T Consensus       271 ~l~~n~l~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-  346 (466)
T 1o6v_A          271 KLGANQISNISPL-AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-  346 (466)
T ss_dssp             ECCSSCCCCCGGG-TTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-
T ss_pred             ECCCCccCccccc-cCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc-
Confidence            4444433222110 0000000000000   000113346778888888888776544  56778888888888877754 


Q ss_pred             hhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhcc
Q 044176          317 PVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSF  353 (362)
Q Consensus       317 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l  353 (362)
                       ..+..+++|++|++++|++++..|  +..+++|+.|
T Consensus       347 -~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L  380 (466)
T 1o6v_A          347 -SSLANLTNINWLSAGHNQISDLTP--LANLTRITQL  380 (466)
T ss_dssp             -GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEE
T ss_pred             -hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEE
Confidence             467778888888888888876555  5666666655

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=2.5e-31  Score=236.00  Aligned_cols=294  Identities=21%  Similarity=0.305  Sum_probs=240.6

Q ss_pred             CCCCcccccCCccccccCCCCcEEEcCCCccccccc-CCcCCCcEEEccCCcCCCCC-CCCCCCccEEEccCcccccCCc
Q 044176            1 LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ-HPWKNITVLNLQNNTIQGTI-LVPPPSTRAFLFSNNKLFGQIP   78 (362)
Q Consensus         1 L~~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~-~~~~~L~~L~l~~n~~~~~~-~~~~~~L~~L~l~~~~~~~~~~   78 (362)
                      +++|.++ .++.  +..+++|+.|++++|.++++++ ..+++|++|++++|.+.+.. +..+++|++|++++|.+... +
T Consensus        51 l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~-~  126 (347)
T 4fmz_A           51 VAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDI-S  126 (347)
T ss_dssp             CCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCC-G
T ss_pred             EeCCccc-cchh--hhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCc-h
Confidence            4677787 5654  5557999999999999999886 67899999999999988643 55699999999999999854 3


Q ss_pred             ccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcC
Q 044176           79 PSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADC  158 (362)
Q Consensus        79 ~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l  158 (362)
                      . +..+++|++|++++|... ..+..+..+ ++|++|++++|.+.. .+. +.. +++|++|++++|.+.+. +. +..+
T Consensus       127 ~-~~~l~~L~~L~l~~n~~~-~~~~~~~~l-~~L~~L~l~~~~~~~-~~~-~~~-l~~L~~L~l~~n~l~~~-~~-~~~l  198 (347)
T 4fmz_A          127 P-LANLTKMYSLNLGANHNL-SDLSPLSNM-TGLNYLTVTESKVKD-VTP-IAN-LTDLYSLSLNYNQIEDI-SP-LASL  198 (347)
T ss_dssp             G-GTTCTTCCEEECTTCTTC-CCCGGGTTC-TTCCEEECCSSCCCC-CGG-GGG-CTTCSEEECTTSCCCCC-GG-GGGC
T ss_pred             h-hccCCceeEEECCCCCCc-ccccchhhC-CCCcEEEecCCCcCC-chh-hcc-CCCCCEEEccCCccccc-cc-ccCC
Confidence            3 889999999999999666 334446666 799999999999874 333 444 48999999999999854 33 8899


Q ss_pred             CCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhh
Q 044176          159 TGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKN  238 (362)
Q Consensus       159 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~  238 (362)
                      ++|+.+++++|.+.+..+  +..+++|++|++++|.+.+..+    +..+++|++|++++|.+.+. +  .+..+++++.
T Consensus       199 ~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~-~--~~~~l~~L~~  269 (347)
T 4fmz_A          199 TSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP----LANLSQLTWLEIGTNQISDI-N--AVKDLTKLKM  269 (347)
T ss_dssp             TTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCCC-G--GGTTCTTCCE
T ss_pred             CccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc----hhcCCCCCEEECCCCccCCC-h--hHhcCCCcCE
Confidence            999999999999976544  7889999999999999887444    47889999999999998853 2  3678889999


Q ss_pred             ccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchh
Q 044176          239 VDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPV  318 (362)
Q Consensus       239 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~  318 (362)
                      +++.++......                    ....+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..| 
T Consensus       270 L~l~~n~l~~~~--------------------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-  328 (347)
T 4fmz_A          270 LNVGSNQISDIS--------------------VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-  328 (347)
T ss_dssp             EECCSSCCCCCG--------------------GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-
T ss_pred             EEccCCccCCCh--------------------hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-
Confidence            998887533221                    12337899999999999998888889999999999999999996655 


Q ss_pred             hhhcCCCcCEEEccCCccc
Q 044176          319 SFANMIVLESLDLSSNKLH  337 (362)
Q Consensus       319 ~~~~~~~L~~L~l~~n~~~  337 (362)
                       +..+++|++|++++|+++
T Consensus       329 -~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          329 -LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             -GGGCTTCSEESSSCC---
T ss_pred             -hhhhhccceeehhhhccc
Confidence             899999999999999986

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=6.7e-33  Score=259.39  Aligned_cols=326  Identities=22%  Similarity=0.214  Sum_probs=225.6

Q ss_pred             CCCCcccccCCccccccCCCCcEEEcCCCccccccc---CCcCCCcEEEccCCcCCCC---CCCCCCCccEEEccCcccc
Q 044176            1 LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGT---ILVPPPSTRAFLFSNNKLF   74 (362)
Q Consensus         1 L~~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~---~~~~~L~~L~l~~n~~~~~---~~~~~~~L~~L~l~~~~~~   74 (362)
                      +++|+++ .+|..++   ++++.|++++|.++.+++   ..+++|++|++++|.+++.   .+..+++|++|++++|.+.
T Consensus         7 ls~n~l~-~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~   82 (520)
T 2z7x_B            7 RSKNGLI-HVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV   82 (520)
T ss_dssp             CTTSCCS-SCCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC
T ss_pred             cCCCCcc-ccccccc---ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee
Confidence            5789999 7998776   899999999999999876   5789999999999999865   4566999999999999998


Q ss_pred             cCCcccccCCCCCCEEEcccCcccc-cCCCCcccccccccEEEcccccccCcchhhhhcCCCCc--cEEeccCCcc--cC
Q 044176           75 GQIPPSIYSLSSLEYISLSHNNLSG-TIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDL--RSLGLNSNKL--RG  149 (362)
Q Consensus        75 ~~~~~~~~~l~~L~~L~L~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~~  149 (362)
                      . +|..  .+++|++|++++|.+++ .+|..+..+ ++|++|++++|.+.+   ..+.. +++|  ++|++++|.+  .+
T Consensus        83 ~-lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l-~~L~~L~L~~n~l~~---~~~~~-l~~L~L~~L~l~~n~l~~~~  154 (520)
T 2z7x_B           83 K-ISCH--PTVNLKHLDLSFNAFDALPICKEFGNM-SQLKFLGLSTTHLEK---SSVLP-IAHLNISKVLLVLGETYGEK  154 (520)
T ss_dssp             E-EECC--CCCCCSEEECCSSCCSSCCCCGGGGGC-TTCCEEEEEESSCCG---GGGGG-GTTSCEEEEEEEECTTTTSS
T ss_pred             e-cCcc--ccCCccEEeccCCccccccchhhhccC-CcceEEEecCcccch---hhccc-cccceeeEEEeecccccccc
Confidence            4 5555  79999999999999985 467788887 799999999999874   23333 3677  9999999988  44


Q ss_pred             CCchhhhcC--------------------------C--------------------------------------------
Q 044176          150 SFPRYLADC--------------------------T--------------------------------------------  159 (362)
Q Consensus       150 ~~~~~~~~l--------------------------~--------------------------------------------  159 (362)
                      ..|..+..+                          +                                            
T Consensus       155 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~  234 (520)
T 2z7x_B          155 EDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTW  234 (520)
T ss_dssp             CCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEH
T ss_pred             cccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCH
Confidence            444444332                          2                                            


Q ss_pred             -------------CCcEEEccCCCCCCCcchhc-----cCCCCCCeEEccCCcCCCccccc-------------------
Q 044176          160 -------------GLEVVNVGNNMIGDTFPSWL-----GSLPGLKILVLRSNRFYGPLCEV-------------------  202 (362)
Q Consensus       160 -------------~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~n~~~~~~~~~-------------------  202 (362)
                                   +|+.|++++|.+.+..|..+     +.+++|+.+++++|.+ ..+...                   
T Consensus       235 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~  313 (520)
T 2z7x_B          235 NSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTR  313 (520)
T ss_dssp             HHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSC
T ss_pred             HHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCc
Confidence                         34444444444433344433     3344433344333333 100000                   


Q ss_pred             ----cccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccc
Q 044176          203 ----NIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIF  278 (362)
Q Consensus       203 ----~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  278 (362)
                          .....+++|++|++++|.+.+..+.. +..+++++.+++.++....+..                .......+++|
T Consensus       314 l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~l~~----------------~~~~~~~l~~L  376 (520)
T 2z7x_B          314 MVHMLCPSKISPFLHLDFSNNLLTDTVFEN-CGHLTELETLILQMNQLKELSK----------------IAEMTTQMKSL  376 (520)
T ss_dssp             CCCCCCCSSCCCCCEEECCSSCCCTTTTTT-CCCCSSCCEEECCSSCCCBHHH----------------HHHHHTTCTTC
T ss_pred             cccccchhhCCcccEEEeECCccChhhhhh-hccCCCCCEEEccCCccCcccc----------------chHHHhhCCCC
Confidence                00134455566666666555434433 3455555555555543221110                01223447899


Q ss_pred             cEEeccCcccCCCcch-hhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhccCCCc
Q 044176          279 TTIDLSSNQFQGEIPQ-VLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFARPD  357 (362)
Q Consensus       279 ~~L~l~~n~~~~~~~~-~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~~~~  357 (362)
                      +.|++++|.+++.+|. .+..+++|++|++++|++++..|..+.  ++|++|++++|+++ .+|..+..+++|++|   +
T Consensus       377 ~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L---~  450 (520)
T 2z7x_B          377 QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQEL---N  450 (520)
T ss_dssp             CEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEE---E
T ss_pred             CEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEE---E
Confidence            9999999999874554 478889999999999999876666554  79999999999999 788877788777777   6


Q ss_pred             cccCC
Q 044176          358 LYTNA  362 (362)
Q Consensus       358 l~~n~  362 (362)
                      +++|+
T Consensus       451 L~~N~  455 (520)
T 2z7x_B          451 VASNQ  455 (520)
T ss_dssp             CCSSC
T ss_pred             CCCCc
Confidence            66663

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=100.00  E-value=5.1e-32  Score=238.88  Aligned_cols=298  Identities=20%  Similarity=0.253  Sum_probs=225.6

Q ss_pred             cccccCCccccccCC-----CCcEEEcCCCcccccccCCcCCCcEEEccCCcCCCC---CCCCCCCccEEEccCcccccC
Q 044176            5 RIRGRISKSDSQRWK-----SLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGT---ILVPPPSTRAFLFSNNKLFGQ   76 (362)
Q Consensus         5 ~~~~~~~~~~~~~~~-----~L~~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~---~~~~~~~L~~L~l~~~~~~~~   76 (362)
                      .++ .+|..+...+|     +++.++++++.++.+|....++++.|++++|.+.+.   .+..+++|++|++++|.+.+.
T Consensus        15 ~l~-~lp~~~~~~cp~~c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~   93 (332)
T 2ft3_A           15 DLD-SLPPTYSAMCPFGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKI   93 (332)
T ss_dssp             -----------CCCCSSCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             ccc-cCCCcccCCCCCCCcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCcc
Confidence            344 67776665544     689999999999999887778999999999988754   355689999999999999988


Q ss_pred             CcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccC--CCchh
Q 044176           77 IPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRG--SFPRY  154 (362)
Q Consensus        77 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~  154 (362)
                      .|..|.++++|++|++++|.++ .+|..++   ++|++|++++|.+.. ++......+++|++|++++|.++.  ..+..
T Consensus        94 ~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  168 (332)
T 2ft3_A           94 HEKAFSPLRKLQKLYISKNHLV-EIPPNLP---SSLVELRIHDNRIRK-VPKGVFSGLRNMNCIEMGGNPLENSGFEPGA  168 (332)
T ss_dssp             CGGGSTTCTTCCEEECCSSCCC-SCCSSCC---TTCCEEECCSSCCCC-CCSGGGSSCSSCCEEECCSCCCBGGGSCTTS
T ss_pred             CHhHhhCcCCCCEEECCCCcCC-ccCcccc---ccCCEEECCCCccCc-cCHhHhCCCccCCEEECCCCccccCCCCccc
Confidence            8888999999999999999998 7887665   589999999999884 444433345899999999998863  45666


Q ss_pred             hhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhh
Q 044176          155 LADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLE  234 (362)
Q Consensus       155 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~  234 (362)
                      +..+ +|+.|++++|.+++ +|..+.  ++|++|++++|.+.+..+..  +..+++|+.|++++|.+.+..+.. +.   
T Consensus       169 ~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~--l~~l~~L~~L~L~~N~l~~~~~~~-~~---  238 (332)
T 2ft3_A          169 FDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELED--LLRYSKLYRLGLGHNQIRMIENGS-LS---  238 (332)
T ss_dssp             SCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTS--STTCTTCSCCBCCSSCCCCCCTTG-GG---
T ss_pred             ccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHH--hcCCCCCCEEECCCCcCCcCChhH-hh---
Confidence            7666 89999999998865 343332  68889999999887754443  377888999999998887544322 11   


Q ss_pred             hhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCcc
Q 044176          235 TMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTG  314 (362)
Q Consensus       235 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~  314 (362)
                                                             .+++|+.|++++|+++ .+|..+..+++|+.|++++|.+++
T Consensus       239 ---------------------------------------~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~  278 (332)
T 2ft3_A          239 ---------------------------------------FLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITK  278 (332)
T ss_dssp             ---------------------------------------GCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCB
T ss_pred             ---------------------------------------CCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCc
Confidence                                                   1678999999999998 677778999999999999999997


Q ss_pred             Cchhhhhc------CCCcCEEEccCCccc--ccCchhhhhhHhhhccCCCccccC
Q 044176          315 SIPVSFAN------MIVLESLDLSSNKLH--GRIPEQFVDAEICSSFARPDLYTN  361 (362)
Q Consensus       315 ~~~~~~~~------~~~L~~L~l~~n~~~--~~~~~~~~~l~~L~~l~~~~l~~n  361 (362)
                      ..+..|..      .+.|+.|++++|++.  +..|..|..+++|+.+   ++++|
T Consensus       279 ~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l---~l~~n  330 (332)
T 2ft3_A          279 VGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAI---QFGNY  330 (332)
T ss_dssp             CCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTE---EC---
T ss_pred             cChhHccccccccccccccceEeecCcccccccCcccccccchhhhh---hcccc
Confidence            76666655      367999999999987  5667677776666666   66666

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=5.6e-33  Score=273.49  Aligned_cols=243  Identities=19%  Similarity=0.179  Sum_probs=139.4

Q ss_pred             CCcccccCCccccccCCCCcEEEcCCCccccccc---CCcCCCcEEEccCCcCCCCC-----CCCCCCccEEEccCcccc
Q 044176            3 NNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGTI-----LVPPPSTRAFLFSNNKLF   74 (362)
Q Consensus         3 ~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~---~~~~~L~~L~l~~n~~~~~~-----~~~~~~L~~L~l~~~~~~   74 (362)
                      +|.+.+.+++..+..+++|+.|++++|.++.+.+   ..+++|+.|++++|.+.+..     +..+++|++|++++|.+.
T Consensus        57 ~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~  136 (844)
T 3j0a_A           57 SQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIR  136 (844)
T ss_dssp             TTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCC
T ss_pred             CCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccc
Confidence            3333334444445555666666666666655543   24555666666666655422     334666666666666665


Q ss_pred             cCCc-ccccCCCCCCEEEcccCcccccCCCCccccc-c------------------------------cccEEEcccccc
Q 044176           75 GQIP-PSIYSLSSLEYISLSHNNLSGTIPPCLGNFS-T------------------------------QLTILHLNNNYL  122 (362)
Q Consensus        75 ~~~~-~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~-~------------------------------~L~~L~l~~~~~  122 (362)
                      +..+ ..|+++++|++|++++|.+++..+..+..+. +                              .|+.|++++|.+
T Consensus       137 ~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l  216 (844)
T 3j0a_A          137 SLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGW  216 (844)
T ss_dssp             CCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCS
T ss_pred             ccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcC
Confidence            4433 3566666666666666665533332222110 0                              144555554443


Q ss_pred             cCcchhhhhcC-------------------------------------CCCccEEeccCCcccCCCchhhhcCCCCcEEE
Q 044176          123 QGRIPDAFANG-------------------------------------SCDLRSLGLNSNKLRGSFPRYLADCTGLEVVN  165 (362)
Q Consensus       123 ~~~~~~~~~~~-------------------------------------~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  165 (362)
                      .+..+..+...                                     .++|++|++++|.+.+..+..+..+++|+.|+
T Consensus       217 ~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  296 (844)
T 3j0a_A          217 TVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLN  296 (844)
T ss_dssp             STTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEE
T ss_pred             chhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEE
Confidence            32222222110                                     13466666666666655556667777777777


Q ss_pred             ccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCC
Q 044176          166 VGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSD  245 (362)
Q Consensus       166 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~  245 (362)
                      +++|.+.+..+..+..+++|++|++++|.+.+..+..  +..+++|+.|++++|.+.+..+ ..+..+++|+.+++.++.
T Consensus       297 L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--~~~l~~L~~L~L~~N~i~~~~~-~~~~~l~~L~~L~Ls~N~  373 (844)
T 3j0a_A          297 LAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSN--FYGLPKVAYIDLQKNHIAIIQD-QTFKFLEKLQTLDLRDNA  373 (844)
T ss_dssp             EESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCS--CSSCTTCCEEECCSCCCCCCCS-SCSCSCCCCCEEEEETCC
T ss_pred             CCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHH--hcCCCCCCEEECCCCCCCccCh-hhhcCCCCCCEEECCCCC
Confidence            7777776666667777778888888877776544433  3667788888888887764333 335667777777777765


Q ss_pred             ccc
Q 044176          246 GLY  248 (362)
Q Consensus       246 ~~~  248 (362)
                      ...
T Consensus       374 l~~  376 (844)
T 3j0a_A          374 LTT  376 (844)
T ss_dssp             SCC
T ss_pred             CCc
Confidence            443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.1e-32  Score=259.69  Aligned_cols=345  Identities=19%  Similarity=0.166  Sum_probs=246.0

Q ss_pred             CCCcccccCCccccccCCCCcEEEcCCCccccccc---CCcCCCcEEEccCCcCCCCC---CCCCCCccEEEccCccccc
Q 044176            2 SNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGTI---LVPPPSTRAFLFSNNKLFG   75 (362)
Q Consensus         2 ~~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~---~~~~~L~~L~l~~n~~~~~~---~~~~~~L~~L~l~~~~~~~   75 (362)
                      ++|.++ .+|..++   ++|+.|++++|.++++++   ..+++|++|++++|.+.+..   +..+++|++|++++|.+.+
T Consensus        13 ~~~~l~-~ip~~~~---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~   88 (549)
T 2z81_A           13 RSRSFT-SIPSGLT---AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS   88 (549)
T ss_dssp             TTSCCS-SCCSCCC---TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCS
T ss_pred             CCCccc-cccccCC---CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCc
Confidence            568888 8998765   789999999999999876   46789999999999998644   5568999999999999998


Q ss_pred             CCcccccCCCCCCEEEcccCcccc-cCCCCcccccccccEEEcccccccCcchh-hhhcCCCCccEEeccCCcccCCCch
Q 044176           76 QIPPSIYSLSSLEYISLSHNNLSG-TIPPCLGNFSTQLTILHLNNNYLQGRIPD-AFANGSCDLRSLGLNSNKLRGSFPR  153 (362)
Q Consensus        76 ~~~~~~~~l~~L~~L~L~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~  153 (362)
                      ..+..|+++++|++|++++|.+++ ..|..+..+ ++|++|++++|.+.+.+|. .+.. +++|++|++++|.+++..|.
T Consensus        89 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l-~~L~~L~L~~n~~~~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~  166 (549)
T 2z81_A           89 LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL-TNLQTLRIGNVETFSEIRRIDFAG-LTSLNELEIKALSLRNYQSQ  166 (549)
T ss_dssp             CCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTC-TTCCEEEEEESSSCCEECTTTTTT-CCEEEEEEEEETTCCEECTT
T ss_pred             cCHHHhccCCCCcEEECCCCcccccchhhhhhcc-CCccEEECCCCccccccCHhhhhc-ccccCeeeccCCcccccChh
Confidence            887889999999999999999984 345667676 7999999999985445664 4554 58999999999999988899


Q ss_pred             hhhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccc-cccccCCcccEEeccCCcccCCCchhH---
Q 044176          154 YLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEV-NIMLPFEALRIIDLSHNEFTGFLPRWI---  229 (362)
Q Consensus       154 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~---  229 (362)
                      .+..+++|+.|++++|.........+..+++|++|++++|.+.+..... .....+++|+.+++++|.+.+..+..+   
T Consensus       167 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~  246 (549)
T 2z81_A          167 SLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKL  246 (549)
T ss_dssp             TTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGG
T ss_pred             hhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHH
Confidence            9999999999999999875433333467899999999999987642111 112446778888888887764433332   


Q ss_pred             HhhhhhhhhccccCCCcccccCCc-------c-----------------------------ccccce--eeee---cCcc
Q 044176          230 FVSLETMKNVDEKGSDGLYMQGEE-------D-----------------------------YYQDSV--TVTV---KGRD  268 (362)
Q Consensus       230 ~~~~~~l~~l~~~~~~~~~~~~~~-------~-----------------------------~~~~~~--~~~~---~~~~  268 (362)
                      ...+.+++.+++..+.........       .                             ......  ....   ....
T Consensus       247 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip  326 (549)
T 2z81_A          247 LRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVP  326 (549)
T ss_dssp             GGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCC
T ss_pred             hhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCC
Confidence            123344555555444322111000       0                             000000  0000   1111


Q ss_pred             hHhhhhcccccEEeccCcccCCCcch---hhcCCCCCcEEEccCCcCccCch--hhhhcCCCcCEEEccCCcccccCchh
Q 044176          269 LVLKRIITIFTTIDLSSNQFQGEIPQ---VLGDFKSLIVLNLSHNGLTGSIP--VSFANMIVLESLDLSSNKLHGRIPEQ  343 (362)
Q Consensus       269 ~~~~~~~~~L~~L~l~~n~~~~~~~~---~~~~~~~L~~L~l~~n~i~~~~~--~~~~~~~~L~~L~l~~n~~~~~~~~~  343 (362)
                      ......+++|+.|++++|++++..+.   .++.+++|+.|++++|++++..+  ..+..+++|++|++++|+++ .+|+.
T Consensus       327 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~  405 (549)
T 2z81_A          327 CSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDS  405 (549)
T ss_dssp             HHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSC
T ss_pred             HHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChh
Confidence            22223477888888888888765532   35677888888888888874322  45778888888888888888 56776


Q ss_pred             hhhhHhhhcc
Q 044176          344 FVDAEICSSF  353 (362)
Q Consensus       344 ~~~l~~L~~l  353 (362)
                      +..+++|++|
T Consensus       406 ~~~~~~L~~L  415 (549)
T 2z81_A          406 CQWPEKMRFL  415 (549)
T ss_dssp             CCCCTTCCEE
T ss_pred             hcccccccEE
Confidence            7666666665

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=100.00  E-value=5.3e-31  Score=232.21  Aligned_cols=287  Identities=20%  Similarity=0.228  Sum_probs=227.1

Q ss_pred             CCCcEEEcCCCcccccccCCcCCCcEEEccCCcCCCCC---CCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccC
Q 044176           19 KSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTI---LVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHN   95 (362)
Q Consensus        19 ~~L~~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~   95 (362)
                      .+++.++++++.++.++....++++.|++++|.+++..   +..+++|++|++++|.+.+..|..|.++++|++|++++|
T Consensus        31 c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  110 (330)
T 1xku_A           31 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN  110 (330)
T ss_dssp             EETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred             CCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence            37899999999999998877789999999999888653   455899999999999999888889999999999999999


Q ss_pred             cccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccC--CCchhhhcCCCCcEEEccCCCCCC
Q 044176           96 NLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRG--SFPRYLADCTGLEVVNVGNNMIGD  173 (362)
Q Consensus        96 ~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~  173 (362)
                      .++ .+|..++   ++|++|++++|.+....+..+.. +++|++|++++|.+..  ..+..+..+++|+.|++++|.+++
T Consensus       111 ~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~  185 (330)
T 1xku_A          111 QLK-ELPEKMP---KTLQELRVHENEITKVRKSVFNG-LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT  185 (330)
T ss_dssp             CCS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHTT-CTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred             cCC-ccChhhc---ccccEEECCCCcccccCHhHhcC-CccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence            998 7887664   58999999999988544445554 4899999999998863  556788889999999999998864


Q ss_pred             CcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCc
Q 044176          174 TFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEE  253 (362)
Q Consensus       174 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~  253 (362)
                       .|..+  .++|++|++++|.+.+..+..  +..+++|++|++++|.+.+..+.. +.                      
T Consensus       186 -l~~~~--~~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~-~~----------------------  237 (330)
T 1xku_A          186 -IPQGL--PPSLTELHLDGNKITKVDAAS--LKGLNNLAKLGLSFNSISAVDNGS-LA----------------------  237 (330)
T ss_dssp             -CCSSC--CTTCSEEECTTSCCCEECTGG--GTTCTTCCEEECCSSCCCEECTTT-GG----------------------
T ss_pred             -CCccc--cccCCEEECCCCcCCccCHHH--hcCCCCCCEEECCCCcCceeChhh-cc----------------------
Confidence             34333  278999999999887654443  477889999999999887543322 11                      


Q ss_pred             cccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhc------CCCcC
Q 044176          254 DYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFAN------MIVLE  327 (362)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~------~~~L~  327 (362)
                                          .+++|+.|++++|+++ .+|..+..+++|++|++++|.+++..+..|..      .+.++
T Consensus       238 --------------------~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~  296 (330)
T 1xku_A          238 --------------------NTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYS  296 (330)
T ss_dssp             --------------------GSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCS
T ss_pred             --------------------CCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCccccccccccc
Confidence                                1678999999999998 67778899999999999999999776666654      37899


Q ss_pred             EEEccCCcccc--cCchhhhhhHhhhccCCCccccCC
Q 044176          328 SLDLSSNKLHG--RIPEQFVDAEICSSFARPDLYTNA  362 (362)
Q Consensus       328 ~L~l~~n~~~~--~~~~~~~~l~~L~~l~~~~l~~n~  362 (362)
                      .+++++|++..  ..|..|..+..++.+   ++++|+
T Consensus       297 ~l~l~~N~~~~~~i~~~~f~~~~~l~~l---~L~~N~  330 (330)
T 1xku_A          297 GVSLFSNPVQYWEIQPSTFRCVYVRAAV---QLGNYK  330 (330)
T ss_dssp             EEECCSSSSCGGGSCGGGGTTCCCGGGE---EC----
T ss_pred             ceEeecCcccccccCccccccccceeEE---EecccC
Confidence            99999999864  456677777666666   788774

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=6.1e-32  Score=236.05  Aligned_cols=249  Identities=26%  Similarity=0.369  Sum_probs=208.3

Q ss_pred             CCccEEEccCccccc--CCcccccCCCCCCEEEccc-CcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCc
Q 044176           61 PSTRAFLFSNNKLFG--QIPPSIYSLSSLEYISLSH-NNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDL  137 (362)
Q Consensus        61 ~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~L~~-~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L  137 (362)
                      .++++|+++++.+.+  .+|..+.++++|++|++++ |.+.+.+|..+..+ ++|++|++++|.+.+..|..+... ++|
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l-~~L~~L~Ls~n~l~~~~p~~~~~l-~~L  127 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKL-TQLHYLYITHTNVSGAIPDFLSQI-KTL  127 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGC-TTCSEEEEEEECCEEECCGGGGGC-TTC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcC-CCCCEEECcCCeeCCcCCHHHhCC-CCC
Confidence            578888888888887  7888999999999999995 88887888888887 789999999999987788888765 899


Q ss_pred             cEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhccCCC-CCCeEEccCCcCCCccccccccccCCcccEEec
Q 044176          138 RSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLP-GLKILVLRSNRFYGPLCEVNIMLPFEALRIIDL  216 (362)
Q Consensus       138 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l  216 (362)
                      ++|++++|.+++..|..+..+++|+.|++++|.+++..|..+..++ +|++|++++|.+.+..+..+  ..++ |++|++
T Consensus       128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~--~~l~-L~~L~L  204 (313)
T 1ogq_A          128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF--ANLN-LAFVDL  204 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG--GGCC-CSEEEC
T ss_pred             CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHH--hCCc-ccEEEC
Confidence            9999999999988899999999999999999999878888888887 99999999999886555554  4454 999999


Q ss_pred             cCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhh
Q 044176          217 SHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVL  296 (362)
Q Consensus       217 ~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  296 (362)
                      ++|.+.+..+..+ .                                          .+++|+.|++++|.+++..+. +
T Consensus       205 s~N~l~~~~~~~~-~------------------------------------------~l~~L~~L~L~~N~l~~~~~~-~  240 (313)
T 1ogq_A          205 SRNMLEGDASVLF-G------------------------------------------SDKNTQKIHLAKNSLAFDLGK-V  240 (313)
T ss_dssp             CSSEEEECCGGGC-C------------------------------------------TTSCCSEEECCSSEECCBGGG-C
T ss_pred             cCCcccCcCCHHH-h------------------------------------------cCCCCCEEECCCCceeeecCc-c
Confidence            9999886544331 1                                          167799999999999866555 7


Q ss_pred             cCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhccCCCccccCC
Q 044176          297 GDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFARPDLYTNA  362 (362)
Q Consensus       297 ~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~~~~l~~n~  362 (362)
                      ..+++|++|++++|++++..|..+..+++|++|++++|++++.+|+. ..+++|+.+   ++.+|+
T Consensus       241 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l---~l~~N~  302 (313)
T 1ogq_A          241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVS---AYANNK  302 (313)
T ss_dssp             CCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGG---GTCSSS
T ss_pred             cccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChH---HhcCCC
Confidence            78899999999999999889999999999999999999999888875 555555555   777764

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.9e-31  Score=255.38  Aligned_cols=354  Identities=21%  Similarity=0.191  Sum_probs=238.1

Q ss_pred             CCCCcccccCCccccccCCCCcEEEcCCCcccccccC---CcCCCcEEEccCCcCCCC---CCCCCCCccEEEccCcccc
Q 044176            1 LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQH---PWKNITVLNLQNNTIQGT---ILVPPPSTRAFLFSNNKLF   74 (362)
Q Consensus         1 L~~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~---~~~~L~~L~l~~n~~~~~---~~~~~~~L~~L~l~~~~~~   74 (362)
                      |++|+|+ .+|+..|..+++|+.|++++|+|+.+++.   .+++|++|++++|.+++.   .+.++++|++|++++|.++
T Consensus        59 Ls~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~  137 (635)
T 4g8a_A           59 LSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA  137 (635)
T ss_dssp             CTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCC
T ss_pred             eeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCC
Confidence            6888998 78888888889999999999999888773   567889999999988753   3566888999999999888


Q ss_pred             cCCcccccCCCCCCEEEcccCcccc-cCCCCcccccccccEEEcccccccCcchhhhhcC--------------------
Q 044176           75 GQIPPSIYSLSSLEYISLSHNNLSG-TIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANG--------------------  133 (362)
Q Consensus        75 ~~~~~~~~~l~~L~~L~L~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~--------------------  133 (362)
                      +..+..|+++++|++|++++|.++. ..|..+..+ ++|++|++++|++.+..+..+...                    
T Consensus       138 ~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i  216 (635)
T 4g8a_A          138 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL-TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI  216 (635)
T ss_dssp             CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGC-TTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEE
T ss_pred             CCChhhhhcCcccCeeccccCccccCCCchhhccc-hhhhhhcccCccccccccccccchhhhhhhhhhhhcccCccccc
Confidence            7777778889999999999998873 345556666 688888888887654333222110                    


Q ss_pred             --------------------------------------------------------------------------------
Q 044176          134 --------------------------------------------------------------------------------  133 (362)
Q Consensus       134 --------------------------------------------------------------------------------  133 (362)
                                                                                                      
T Consensus       217 ~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~  296 (635)
T 4g8a_A          217 QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD  296 (635)
T ss_dssp             CTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEE
T ss_pred             CcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhccccc
Confidence                                                                                            


Q ss_pred             ------------------------------CCCccEEeccCCcccCCC-------------------chhhhcCCCCcEE
Q 044176          134 ------------------------------SCDLRSLGLNSNKLRGSF-------------------PRYLADCTGLEVV  164 (362)
Q Consensus       134 ------------------------------~~~L~~L~l~~~~~~~~~-------------------~~~~~~l~~L~~L  164 (362)
                                                    ...++.|.+.++.+....                   +.....++.|+.+
T Consensus       297 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L  376 (635)
T 4g8a_A          297 GIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFL  376 (635)
T ss_dssp             ECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEE
T ss_pred             chhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccc
Confidence                                          001122222222211100                   0011235677778


Q ss_pred             EccCCCCCCC--cchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhcccc
Q 044176          165 NVGNNMIGDT--FPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEK  242 (362)
Q Consensus       165 ~l~~~~~~~~--~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~  242 (362)
                      ++++|.+...  .+..+..+.+|+.+++..+.......   .+..+++|+.+++..+......+...+..+..+..+++.
T Consensus       377 ~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~---~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls  453 (635)
T 4g8a_A          377 DLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSS---NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS  453 (635)
T ss_dssp             ECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECS---CCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECT
T ss_pred             hhhccccccccccccchhhhhhhhhhhccccccccccc---cccccccccchhhhhcccccccccccccccccccccccc
Confidence            8877766432  23345566778888877765543222   234566677777766665555555555666666666665


Q ss_pred             CCCcccccCC-ccccccceeeeecC------cchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccC
Q 044176          243 GSDGLYMQGE-EDYYQDSVTVTVKG------RDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGS  315 (362)
Q Consensus       243 ~~~~~~~~~~-~~~~~~~~~~~~~~------~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~  315 (362)
                      .+........ ..............      ........+++|+.|++++|++++..|..|.++++|++|+|++|++++.
T Consensus       454 ~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l  533 (635)
T 4g8a_A          454 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL  533 (635)
T ss_dssp             TSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBC
T ss_pred             ccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCC
Confidence            5544332211 11111111111111      1112234478999999999999988899999999999999999999988


Q ss_pred             chhhhhcCCCcCEEEccCCcccccCchhhhhh-HhhhccCCCccccCC
Q 044176          316 IPVSFANMIVLESLDLSSNKLHGRIPEQFVDA-EICSSFARPDLYTNA  362 (362)
Q Consensus       316 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~l~~~~l~~n~  362 (362)
                      .+..|..+++|+.|++++|++++..|+.|..+ ++|++|   ++++|.
T Consensus       534 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L---~L~~Np  578 (635)
T 4g8a_A          534 DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL---NLTQND  578 (635)
T ss_dssp             CCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEE---ECTTCC
T ss_pred             ChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEE---EeeCCC
Confidence            88899999999999999999999889888877 466666   777774

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=7e-32  Score=265.72  Aligned_cols=311  Identities=17%  Similarity=0.175  Sum_probs=224.5

Q ss_pred             CCCcccccCCccccccCCCCcEEEcCCCccccccc---CCcCCCcEEEccCCcCC----CCCCCCCCCccEEEccCcccc
Q 044176            2 SNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQ----GTILVPPPSTRAFLFSNNKLF   74 (362)
Q Consensus         2 ~~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~---~~~~~L~~L~l~~n~~~----~~~~~~~~~L~~L~l~~~~~~   74 (362)
                      ++++++ .||.    ..++++.|++++|.|+.+.+   ..+++|+.|++++|...    ...+..+++|++|++++|.+.
T Consensus        12 s~~~L~-~vP~----lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~   86 (844)
T 3j0a_A           12 RFCNLT-QVPQ----VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY   86 (844)
T ss_dssp             SCCCSS-CCCS----SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCC
T ss_pred             cCCCCC-CCCC----CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCc
Confidence            467788 7887    23889999999999998876   46788999999999543    334666899999999999999


Q ss_pred             cCCcccccCCCCCCEEEcccCcccccCCCC--cccccccccEEEcccccccCcch-hhhhcCCCCccEEeccCCcccCCC
Q 044176           75 GQIPPSIYSLSSLEYISLSHNNLSGTIPPC--LGNFSTQLTILHLNNNYLQGRIP-DAFANGSCDLRSLGLNSNKLRGSF  151 (362)
Q Consensus        75 ~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~--l~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~  151 (362)
                      +..|..|.++++|++|++++|.+++.++..  +..+ ++|++|++++|.+.+..+ ..+.. +++|++|++++|.+++..
T Consensus        87 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L-~~L~~L~Ls~N~l~~~~~~~~~~~-L~~L~~L~Ls~N~i~~~~  164 (844)
T 3j0a_A           87 FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL-KALTRLDLSKNQIRSLYLHPSFGK-LNSLKSIDFSSNQIFLVC  164 (844)
T ss_dssp             EECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSC-SSCCEEEEESCCCCCCCCCGGGGT-CSSCCEEEEESSCCCCCC
T ss_pred             ccCHhHccCCcccCEeeCcCCCCCcccccCcccccc-CCCCEEECCCCcccccccchhHhh-CCCCCEEECCCCcCCeeC
Confidence            888999999999999999999998655554  6666 799999999999876544 34554 589999999999998888


Q ss_pred             chhhhcC--CCCcEEEccCCCCCCCcchhccCCCC------CCeEEccCCcCCCccccccc-ccc---------------
Q 044176          152 PRYLADC--TGLEVVNVGNNMIGDTFPSWLGSLPG------LKILVLRSNRFYGPLCEVNI-MLP---------------  207 (362)
Q Consensus       152 ~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~------L~~L~l~~n~~~~~~~~~~~-~~~---------------  207 (362)
                      +..+..+  ++|+.|++++|.+.+..+..++.+++      |+.|++++|.+.+..+.... ...               
T Consensus       165 ~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~  244 (844)
T 3j0a_A          165 EHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMG  244 (844)
T ss_dssp             SGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCB
T ss_pred             HHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccc
Confidence            8888877  89999999999987777666666554      89999999876644332210 001               


Q ss_pred             --------------------CCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCc
Q 044176          208 --------------------FEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGR  267 (362)
Q Consensus       208 --------------------~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (362)
                                          .++|+.|++++|.+.+..+. .+..+++++.+++..+......                 
T Consensus       245 ~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~i~~~~-----------------  306 (844)
T 3j0a_A          245 AGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSR-VFETLKDLKVLNLAYNKINKIA-----------------  306 (844)
T ss_dssp             CSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSC-CSSSCCCCCEEEEESCCCCEEC-----------------
T ss_pred             ccccccccCCCChhhhhccccCCccEEECCCCcccccChh-hhhcCCCCCEEECCCCcCCCCC-----------------
Confidence                                24566666666665533332 2455555565555555322211                 


Q ss_pred             chHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccc
Q 044176          268 DLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHG  338 (362)
Q Consensus       268 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~  338 (362)
                       ......+++|+.|++++|.+++..+..+..+++|+.|++++|.+....+..|..+++|++|++++|.+++
T Consensus       307 -~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~  376 (844)
T 3j0a_A          307 -DEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT  376 (844)
T ss_dssp             -TTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred             -hHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence             1112235667777777777776666677777777777777777776666667777777777777777763

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.98  E-value=3.1e-31  Score=239.09  Aligned_cols=282  Identities=21%  Similarity=0.222  Sum_probs=171.8

Q ss_pred             CCCCcEEEcCCCccccccc---CCcCCCcEEEccCCcCCCC---CCCCCCCccEEEccCcccccCCcccccCCCCCCEEE
Q 044176           18 WKSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGT---ILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYIS   91 (362)
Q Consensus        18 ~~~L~~L~ls~~~i~~~~~---~~~~~L~~L~l~~n~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~   91 (362)
                      +++++.++++++.++.++.   ..+++|++|++++|.+.+.   .+..+++|++|++++|.+.+..|..|.++++|++|+
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence            3778888888888887776   3567788888888877653   345577888888888888777777778888888888


Q ss_pred             cccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCC
Q 044176           92 LSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMI  171 (362)
Q Consensus        92 L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  171 (362)
                      +++|.++ .+|..++...++|++|++++|.+....+..+.. +++|++|++++|.+++.   .+..+++|+.+++++|.+
T Consensus       124 L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l  198 (390)
T 3o6n_A          124 LERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA-TTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL  198 (390)
T ss_dssp             CCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSS-CTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred             CCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccC-CCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence            8888887 666655333367888888888877544545544 37788888888877643   245567777777777766


Q ss_pred             CCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccC
Q 044176          172 GDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQG  251 (362)
Q Consensus       172 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~  251 (362)
                      .+     +...++|++|++++|.+.....     ...++|+.|++++|.+.+.   ..+..+++++.+++.++...... 
T Consensus       199 ~~-----~~~~~~L~~L~l~~n~l~~~~~-----~~~~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~Ls~n~l~~~~-  264 (390)
T 3o6n_A          199 ST-----LAIPIAVEELDASHNSINVVRG-----PVNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKIM-  264 (390)
T ss_dssp             SE-----EECCSSCSEEECCSSCCCEEEC-----CCCSSCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCEEE-
T ss_pred             cc-----cCCCCcceEEECCCCeeeeccc-----cccccccEEECCCCCCccc---HHHcCCCCccEEECCCCcCCCcC-
Confidence            32     2234456666666665544211     1234566666666665532   12455555565555555322110 


Q ss_pred             CccccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEc
Q 044176          252 EEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDL  331 (362)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l  331 (362)
                                       ......+++|+.|++++|++++ ++..+..+++|+.|++++|++. .+|..+..+++|++|++
T Consensus       265 -----------------~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L  325 (390)
T 3o6n_A          265 -----------------YHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYL  325 (390)
T ss_dssp             -----------------SGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEEC
T ss_pred             -----------------hhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEEC
Confidence                             0111124555555555555552 2333344555555555555555 34444555555555555


Q ss_pred             cCCccc
Q 044176          332 SSNKLH  337 (362)
Q Consensus       332 ~~n~~~  337 (362)
                      ++|+++
T Consensus       326 ~~N~i~  331 (390)
T 3o6n_A          326 DHNSIV  331 (390)
T ss_dssp             CSSCCC
T ss_pred             CCCccc
Confidence            555555

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.98  E-value=2.5e-31  Score=250.93  Aligned_cols=134  Identities=19%  Similarity=0.260  Sum_probs=91.2

Q ss_pred             ccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccC
Q 044176          206 LPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSS  285 (362)
Q Consensus       206 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  285 (362)
                      ..+++|++|++++|.+.+..+.. +..+++++.+++.++....+..                .......+++|+.|++++
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~----------------~~~~~~~l~~L~~L~l~~  412 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQG-CSTLKRLQTLILQRNGLKNFFK----------------VALMTKNMSSLETLDVSL  412 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTT-CCSCSSCCEEECCSSCCCBTTH----------------HHHTTTTCTTCCEEECTT
T ss_pred             cCCCCceEEECCCCccccchhhh-hcccCCCCEEECCCCCcCCccc----------------chhhhcCCCCCCEEECCC
Confidence            34556666666666666544433 4555666666665553222111                011123478999999999


Q ss_pred             cccCCCcc-hhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhccCCCccccCC
Q 044176          286 NQFQGEIP-QVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFARPDLYTNA  362 (362)
Q Consensus       286 n~~~~~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~~~~l~~n~  362 (362)
                      |.+++.+| ..+..+++|+.|++++|++++..|..+.  ++|++|++++|+++ .+|..+..+++|++|   ++++|+
T Consensus       413 N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L---~L~~N~  484 (562)
T 3a79_B          413 NSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQEL---NVASNQ  484 (562)
T ss_dssp             SCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEE---ECCSSC
T ss_pred             CcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEE---ECCCCC
Confidence            99987444 4578889999999999999865555443  79999999999999 677766677777777   666664

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.98  E-value=9.3e-31  Score=236.00  Aligned_cols=284  Identities=17%  Similarity=0.140  Sum_probs=232.2

Q ss_pred             CcCCCcEEEccCCcCCCCC---CCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccE
Q 044176           38 PWKNITVLNLQNNTIQGTI---LVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTI  114 (362)
Q Consensus        38 ~~~~L~~L~l~~n~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~  114 (362)
                      .+++++.++++++.+....   +..+++|++|++++|.+....+..|..+++|++|++++|.+++..|..+..+ ++|++
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~  121 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV-PLLTV  121 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCE
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCC-CCCCE
Confidence            5689999999999887644   3448999999999999998888899999999999999999995445556666 79999


Q ss_pred             EEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCc
Q 044176          115 LHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNR  194 (362)
Q Consensus       115 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~  194 (362)
                      |++++|.+. .+|......+++|++|++++|.+++..+..+..+++|+.|++++|.+++.   .+..+++|+.+++++|.
T Consensus       122 L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~  197 (390)
T 3o6n_A          122 LVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL  197 (390)
T ss_dssp             EECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSC
T ss_pred             EECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccc
Confidence            999999998 66766544458999999999999977788899999999999999998654   25678999999999998


Q ss_pred             CCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhh
Q 044176          195 FYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRI  274 (362)
Q Consensus       195 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (362)
                      +.+.       ...++|++|++++|.+... +..   ..++++.+++.++.....                    .....
T Consensus       198 l~~~-------~~~~~L~~L~l~~n~l~~~-~~~---~~~~L~~L~l~~n~l~~~--------------------~~l~~  246 (390)
T 3o6n_A          198 LSTL-------AIPIAVEELDASHNSINVV-RGP---VNVELTILKLQHNNLTDT--------------------AWLLN  246 (390)
T ss_dssp             CSEE-------ECCSSCSEEECCSSCCCEE-ECC---CCSSCCEEECCSSCCCCC--------------------GGGGG
T ss_pred             cccc-------CCCCcceEEECCCCeeeec-ccc---ccccccEEECCCCCCccc--------------------HHHcC
Confidence            7642       3346899999999998743 322   246788888777753221                    12233


Q ss_pred             cccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhccC
Q 044176          275 ITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFA  354 (362)
Q Consensus       275 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~  354 (362)
                      +++|+.|++++|.+++..+..+..+++|+.|++++|++++ ++..+..+++|++|++++|+++ .+|..+..+++|+.| 
T Consensus       247 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L-  323 (390)
T 3o6n_A          247 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENL-  323 (390)
T ss_dssp             CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEE-
T ss_pred             CCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEE-
Confidence            7899999999999998889999999999999999999984 6677788999999999999999 577777777777766 


Q ss_pred             CCccccCC
Q 044176          355 RPDLYTNA  362 (362)
Q Consensus       355 ~~~l~~n~  362 (362)
                        ++++|+
T Consensus       324 --~L~~N~  329 (390)
T 3o6n_A          324 --YLDHNS  329 (390)
T ss_dssp             --ECCSSC
T ss_pred             --ECCCCc
Confidence              566653

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.97  E-value=5.4e-30  Score=236.22  Aligned_cols=292  Identities=24%  Similarity=0.308  Sum_probs=193.0

Q ss_pred             CCCCcccccCCccccccCCCCcEEEcCCCccccccc-CCcCCCcEEEccCCcCCCCC-CCCCCCccEEEccCcccccCCc
Q 044176            1 LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ-HPWKNITVLNLQNNTIQGTI-LVPPPSTRAFLFSNNKLFGQIP   78 (362)
Q Consensus         1 L~~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~-~~~~~L~~L~l~~n~~~~~~-~~~~~~L~~L~l~~~~~~~~~~   78 (362)
                      |++|.++ .+++  +..+++|+.|++++|.++.+++ ..+++|+.|++++|.+.+.. +..+++|++|++++|.+.+. +
T Consensus        75 Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~  150 (466)
T 1o6v_A           75 FSNNQLT-DITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDI-S  150 (466)
T ss_dssp             CCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCC-G
T ss_pred             CCCCccC-Cchh--hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChHHcCCCCCCEEECCCCccCCC-h
Confidence            5788888 4555  5566999999999999988876 57888999999999887654 55588999999998888743 2


Q ss_pred             cccc---------------------CCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCc
Q 044176           79 PSIY---------------------SLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDL  137 (362)
Q Consensus        79 ~~~~---------------------~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L  137 (362)
                       .+.                     ++++|++|++++|.++ .++ .+..+ ++|++|++++|.+.+..|  +.. +++|
T Consensus       151 -~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~-~l~~l-~~L~~L~l~~n~l~~~~~--~~~-l~~L  223 (466)
T 1o6v_A          151 -ALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS-DIS-VLAKL-TNLESLIATNNQISDITP--LGI-LTNL  223 (466)
T ss_dssp             -GGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCC-CCG-GGGGC-TTCSEEECCSSCCCCCGG--GGG-CTTC
T ss_pred             -hhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCC-CCh-hhccC-CCCCEEEecCCccccccc--ccc-cCCC
Confidence             344                     4455555555555554 222 23333 455555555555553322  222 2556


Q ss_pred             cEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEecc
Q 044176          138 RSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLS  217 (362)
Q Consensus       138 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~  217 (362)
                      ++|++++|.+++.  ..+..+++|+.|++++|.+.+..+  +..+++|++|++++|.+.+..+    +..+++|+.|+++
T Consensus       224 ~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~L~  295 (466)
T 1o6v_A          224 DELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP----LAGLTALTNLELN  295 (466)
T ss_dssp             CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECC
T ss_pred             CEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc----ccCCCccCeEEcC
Confidence            6666666555532  345555666666666665544333  5556666666666665554322    3455666666666


Q ss_pred             CCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhc
Q 044176          218 HNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLG  297 (362)
Q Consensus       218 ~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~  297 (362)
                      +|.+.+..+   +..+++|+.+++.++......                    ....+++|+.|++++|++++.  ..+.
T Consensus       296 ~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~--------------------~~~~l~~L~~L~l~~n~l~~~--~~l~  350 (466)
T 1o6v_A          296 ENQLEDISP---ISNLKNLTYLTLYFNNISDIS--------------------PVSSLTKLQRLFFYNNKVSDV--SSLA  350 (466)
T ss_dssp             SSCCSCCGG---GGGCTTCSEEECCSSCCSCCG--------------------GGGGCTTCCEEECCSSCCCCC--GGGT
T ss_pred             CCcccCchh---hcCCCCCCEEECcCCcCCCch--------------------hhccCccCCEeECCCCccCCc--hhhc
Confidence            666654332   445566666666555322111                    123488999999999999865  4688


Q ss_pred             CCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccc
Q 044176          298 DFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHG  338 (362)
Q Consensus       298 ~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~  338 (362)
                      .+++|+.|++++|++++..|  +..+++|+.|++++|++++
T Consensus       351 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          351 NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             TCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             cCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            99999999999999997766  8999999999999999996

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=1.4e-30  Score=247.20  Aligned_cols=281  Identities=21%  Similarity=0.222  Sum_probs=150.0

Q ss_pred             CCCcEEEcCCCccccccc---CCcCCCcEEEccCCcCCCC---CCCCCCCccEEEccCcccccCCcccccCCCCCCEEEc
Q 044176           19 KSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGT---ILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISL   92 (362)
Q Consensus        19 ~~L~~L~ls~~~i~~~~~---~~~~~L~~L~l~~n~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L   92 (362)
                      .+++.++++++.++.+++   ..+++|+.|++++|.+.+.   .+..+++|++|++++|.+.+..|..|+++++|++|++
T Consensus        51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  130 (597)
T 3oja_B           51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  130 (597)
T ss_dssp             CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence            566777777777776665   3456677777777766643   2344667777777777776666666677777777777


Q ss_pred             ccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCC
Q 044176           93 SHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIG  172 (362)
Q Consensus        93 ~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  172 (362)
                      ++|.++ .+|..++...++|++|++++|.+.+..|..+... ++|++|++++|.+++.   .+..++.|+.|++++|.+.
T Consensus       131 ~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~  205 (597)
T 3oja_B          131 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT-TSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS  205 (597)
T ss_dssp             CSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTC-TTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred             eCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcC-CcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCccc
Confidence            777776 5555443222567777777777665444445443 6677777777766643   2344566666666666553


Q ss_pred             CCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCC
Q 044176          173 DTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGE  252 (362)
Q Consensus       173 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~  252 (362)
                      +     +...++|+.|++++|.+......     ..++|+.|++++|.+.+.   ..+..+++|+.+++.++......  
T Consensus       206 ~-----l~~~~~L~~L~ls~n~l~~~~~~-----~~~~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N~l~~~~--  270 (597)
T 3oja_B          206 T-----LAIPIAVEELDASHNSINVVRGP-----VNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKIM--  270 (597)
T ss_dssp             E-----EECCTTCSEEECCSSCCCEEECS-----CCSCCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCEEE--
T ss_pred             c-----ccCCchhheeeccCCcccccccc-----cCCCCCEEECCCCCCCCC---hhhccCCCCCEEECCCCccCCCC--
Confidence            2     22334555555555554432211     123455555555555432   12344445555554444321110  


Q ss_pred             ccccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEcc
Q 044176          253 EDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLS  332 (362)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~  332 (362)
                                      ......+++|+.|++++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|++|+++
T Consensus       271 ----------------~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~  332 (597)
T 3oja_B          271 ----------------YHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLD  332 (597)
T ss_dssp             ----------------SGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECC
T ss_pred             ----------------HHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECC
Confidence                            0111114445555555555442 2333334455555555555554 344444445555555555


Q ss_pred             CCccc
Q 044176          333 SNKLH  337 (362)
Q Consensus       333 ~n~~~  337 (362)
                      +|+++
T Consensus       333 ~N~l~  337 (597)
T 3oja_B          333 HNSIV  337 (597)
T ss_dssp             SSCCC
T ss_pred             CCCCC
Confidence            55544

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.97  E-value=2.2e-29  Score=230.69  Aligned_cols=297  Identities=20%  Similarity=0.179  Sum_probs=189.6

Q ss_pred             CCCCcccccCCccccccCCCCcEEEcCCCcccccccCCcCCCcEEEccCCcCCCCCCCCCCCccEEEccCcccccCCccc
Q 044176            1 LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPS   80 (362)
Q Consensus         1 L~~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~   80 (362)
                      |++|++++ +| + +..+++|+.|++++|+++.++...+++|++|++++|.+++..+..+++|++|++++|.+.+. +  
T Consensus        49 Ls~n~l~~-~~-~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~N~l~~l-~--  122 (457)
T 3bz5_A           49 CHNSSITD-MT-G-IEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKL-D--  122 (457)
T ss_dssp             CCSSCCCC-CT-T-GGGCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECCSSCCSCC-C--
T ss_pred             ccCCCccc-Ch-h-hcccCCCCEEEccCCcCCeEccccCCCCCEEECcCCCCceeecCCCCcCCEEECCCCcCCee-c--
Confidence            45677773 44 2 34457777777777777777656677777777777777766666677777777777777653 2  


Q ss_pred             ccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCC
Q 044176           81 IYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTG  160 (362)
Q Consensus        81 ~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~  160 (362)
                      ++.+++|++|++++|+++ .++  +..+ ++|++|++++|...+.++  +.. +++|++|++++|.+++ ++  +..++.
T Consensus       123 ~~~l~~L~~L~l~~N~l~-~l~--l~~l-~~L~~L~l~~n~~~~~~~--~~~-l~~L~~L~ls~n~l~~-l~--l~~l~~  192 (457)
T 3bz5_A          123 VSQNPLLTYLNCARNTLT-EID--VSHN-TQLTELDCHLNKKITKLD--VTP-QTQLTTLDCSFNKITE-LD--VSQNKL  192 (457)
T ss_dssp             CTTCTTCCEEECTTSCCS-CCC--CTTC-TTCCEEECTTCSCCCCCC--CTT-CTTCCEEECCSSCCCC-CC--CTTCTT
T ss_pred             CCCCCcCCEEECCCCccc-eec--cccC-CcCCEEECCCCCcccccc--ccc-CCcCCEEECCCCccce-ec--cccCCC
Confidence            667777777777777776 343  4444 567777777774333332  222 3677777777777774 33  666777


Q ss_pred             CcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhcc
Q 044176          161 LEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVD  240 (362)
Q Consensus       161 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~  240 (362)
                      |+.|++++|.+++.   .++.+++|++|++++|.+++. +    +..+++|+.|++++|.+.+..    ...+++++.++
T Consensus       193 L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p----~~~l~~L~~L~l~~N~l~~~~----~~~l~~L~~L~  260 (457)
T 3bz5_A          193 LNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D----VTPLTQLTYFDCSVNPLTELD----VSTLSKLTTLH  260 (457)
T ss_dssp             CCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C----CTTCTTCSEEECCSSCCSCCC----CTTCTTCCEEE
T ss_pred             CCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C----ccccCCCCEEEeeCCcCCCcC----HHHCCCCCEEe
Confidence            77777777777554   266777777788877777762 2    356777778888777777532    22344454444


Q ss_pred             ccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCcccCCCcch--------hhcCCCCCcEEEccCCcC
Q 044176          241 EKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQ--------VLGDFKSLIVLNLSHNGL  312 (362)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~--------~~~~~~~L~~L~l~~n~i  312 (362)
                      +..+....+.-.......          ......+++|+.|++++|...+.+|.        .++.+++|++|++++|++
T Consensus       261 l~~n~L~~L~l~~n~~~~----------~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l  330 (457)
T 3bz5_A          261 CIQTDLLEIDLTHNTQLI----------YFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTEL  330 (457)
T ss_dssp             CTTCCCSCCCCTTCTTCC----------EEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCC
T ss_pred             ccCCCCCEEECCCCccCC----------cccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcc
Confidence            443322211110000000          00112367788888888875444332        255667888888888888


Q ss_pred             ccCchhhhhcCCCcCEEEccCCcccc
Q 044176          313 TGSIPVSFANMIVLESLDLSSNKLHG  338 (362)
Q Consensus       313 ~~~~~~~~~~~~~L~~L~l~~n~~~~  338 (362)
                      ++.   .+..+++|+.|++++|++++
T Consensus       331 ~~l---~l~~l~~L~~L~l~~N~l~~  353 (457)
T 3bz5_A          331 TEL---DVSHNTKLKSLSCVNAHIQD  353 (457)
T ss_dssp             SCC---CCTTCTTCSEEECCSSCCCB
T ss_pred             ccc---ccccCCcCcEEECCCCCCCC
Confidence            863   27888888888888888885

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=9.3e-30  Score=241.50  Aligned_cols=283  Identities=17%  Similarity=0.137  Sum_probs=231.9

Q ss_pred             CcCCCcEEEccCCcCCCCCC---CCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccE
Q 044176           38 PWKNITVLNLQNNTIQGTIL---VPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTI  114 (362)
Q Consensus        38 ~~~~L~~L~l~~n~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~  114 (362)
                      .+.+++.+++++|.+.....   ..+++|+.|++++|.+.+..+..|+.+++|++|++++|.+++..|..+..+ ++|++
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~  127 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV-PLLTV  127 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCE
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCC-CCCCE
Confidence            56789999999998876443   348999999999999998888899999999999999999995444455666 79999


Q ss_pred             EEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCc
Q 044176          115 LHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNR  194 (362)
Q Consensus       115 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~  194 (362)
                      |++++|.+. .+|..++..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..   +..+++|+.+++++|.
T Consensus       128 L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~  203 (597)
T 3oja_B          128 LVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNL  203 (597)
T ss_dssp             EECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSC
T ss_pred             EEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCc
Confidence            999999998 566665444589999999999999888888999999999999999986642   5568999999999998


Q ss_pred             CCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhh
Q 044176          195 FYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRI  274 (362)
Q Consensus       195 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (362)
                      +.+.       ...++|+.|++++|.+....+ ..   .++++.+++.++.....                    .....
T Consensus       204 l~~l-------~~~~~L~~L~ls~n~l~~~~~-~~---~~~L~~L~L~~n~l~~~--------------------~~l~~  252 (597)
T 3oja_B          204 LSTL-------AIPIAVEELDASHNSINVVRG-PV---NVELTILKLQHNNLTDT--------------------AWLLN  252 (597)
T ss_dssp             CSEE-------ECCTTCSEEECCSSCCCEEEC-SC---CSCCCEEECCSSCCCCC--------------------GGGGG
T ss_pred             cccc-------cCCchhheeeccCCccccccc-cc---CCCCCEEECCCCCCCCC--------------------hhhcc
Confidence            7642       335689999999999874332 21   25677888777753221                    12234


Q ss_pred             cccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhccC
Q 044176          275 ITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFA  354 (362)
Q Consensus       275 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~  354 (362)
                      +++|+.|++++|.+++..|..++.+++|+.|+|++|.+++ +|..+..+++|+.|++++|.++ .+|..+..+++|+.| 
T Consensus       253 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L-  329 (597)
T 3oja_B          253 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENL-  329 (597)
T ss_dssp             CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEE-
T ss_pred             CCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEE-
Confidence            7899999999999998889999999999999999999995 6777788999999999999999 678888777777776 


Q ss_pred             CCccccC
Q 044176          355 RPDLYTN  361 (362)
Q Consensus       355 ~~~l~~n  361 (362)
                        ++++|
T Consensus       330 --~L~~N  334 (597)
T 3oja_B          330 --YLDHN  334 (597)
T ss_dssp             --ECCSS
T ss_pred             --ECCCC
Confidence              55555

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.97  E-value=9.9e-30  Score=243.53  Aligned_cols=347  Identities=20%  Similarity=0.263  Sum_probs=246.6

Q ss_pred             CcccccCCccccccCCCCcEEEcCCCccccccc---CCcCCCcEEEccCCcCCCC---CCCCCCCccEEEccCcccccCC
Q 044176            4 NRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGT---ILVPPPSTRAFLFSNNKLFGQI   77 (362)
Q Consensus         4 n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~---~~~~~L~~L~l~~n~~~~~---~~~~~~~L~~L~l~~~~~~~~~   77 (362)
                      -+++ .||..+.   ++++.|++++|+|+.+++   ..+++|++|++++|.|++.   .+..+++|++|++++|.+....
T Consensus        41 ~~l~-~vP~~lp---~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~  116 (635)
T 4g8a_A           41 LNFY-KIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA  116 (635)
T ss_dssp             SCCS-SCCSSSC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred             CCcC-ccCCCCC---cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCC
Confidence            3577 7887654   579999999999999987   4678999999999998854   4666999999999999999887


Q ss_pred             cccccCCCCCCEEEcccCcccccCCC-CcccccccccEEEcccccccCc-chhhhhcCCCCccEEeccCCcccCCCchhh
Q 044176           78 PPSIYSLSSLEYISLSHNNLSGTIPP-CLGNFSTQLTILHLNNNYLQGR-IPDAFANGSCDLRSLGLNSNKLRGSFPRYL  155 (362)
Q Consensus        78 ~~~~~~l~~L~~L~L~~~~~~~~~~~-~l~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  155 (362)
                      +..|.++++|++|++++|+++ .++. .+..+ ++|++|++++|.+... .|..+.. ++.|++|++++|.+++..+..+
T Consensus       117 ~~~f~~L~~L~~L~Ls~N~l~-~l~~~~~~~L-~~L~~L~Ls~N~l~~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~l  193 (635)
T 4g8a_A          117 LGAFSGLSSLQKLVAVETNLA-SLENFPIGHL-KTLKELNVAHNLIQSFKLPEYFSN-LTNLEHLDLSSNKIQSIYCTDL  193 (635)
T ss_dssp             GGGGTTCTTCCEEECTTSCCC-CSTTCCCTTC-TTCCEEECCSSCCCCCCCCGGGGG-CTTCCEEECCSSCCCEECGGGG
T ss_pred             HHHhcCCCCCCEEECCCCcCC-CCChhhhhcC-cccCeeccccCccccCCCchhhcc-chhhhhhcccCccccccccccc
Confidence            788999999999999999999 5665 45555 7999999999998743 4565555 4899999999998764333332


Q ss_pred             hcCC----------------------------------------------------------------------------
Q 044176          156 ADCT----------------------------------------------------------------------------  159 (362)
Q Consensus       156 ~~l~----------------------------------------------------------------------------  159 (362)
                      ..+.                                                                            
T Consensus       194 ~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~  273 (635)
T 4g8a_A          194 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS  273 (635)
T ss_dssp             HHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTT
T ss_pred             cchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccc
Confidence            2111                                                                            


Q ss_pred             -------------------------------------------------------CCcEEEccCCCCCCCcc--------
Q 044176          160 -------------------------------------------------------GLEVVNVGNNMIGDTFP--------  176 (362)
Q Consensus       160 -------------------------------------------------------~L~~L~l~~~~~~~~~~--------  176 (362)
                                                                             .++.|++.++.+.....        
T Consensus       274 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~  353 (635)
T 4g8a_A          274 ALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKR  353 (635)
T ss_dssp             TTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCE
T ss_pred             ccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhh
Confidence                                                                   12222222222111000        


Q ss_pred             -----------hhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCC
Q 044176          177 -----------SWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSD  245 (362)
Q Consensus       177 -----------~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~  245 (362)
                                 .....+++|+.++++.|.+............+.+++.+++..+......+  .+..++.++.+++..+.
T Consensus       354 l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~--~~~~l~~L~~l~l~~~~  431 (635)
T 4g8a_A          354 LTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSS--NFLGLEQLEHLDFQHSN  431 (635)
T ss_dssp             EEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECS--CCTTCTTCCEEECTTSE
T ss_pred             cccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccc--cccccccccchhhhhcc
Confidence                       00113456677777777665433333334567899999999988764332  25667888888777665


Q ss_pred             cccccCCccc--cccceeeee-----cCcchHhhhhcccccEEeccCccc-CCCcchhhcCCCCCcEEEccCCcCccCch
Q 044176          246 GLYMQGEEDY--YQDSVTVTV-----KGRDLVLKRIITIFTTIDLSSNQF-QGEIPQVLGDFKSLIVLNLSHNGLTGSIP  317 (362)
Q Consensus       246 ~~~~~~~~~~--~~~~~~~~~-----~~~~~~~~~~~~~L~~L~l~~n~~-~~~~~~~~~~~~~L~~L~l~~n~i~~~~~  317 (362)
                      .........+  .........     ..........++.++.|++++|.+ ....|..+..+++|+.|+|++|++++..|
T Consensus       432 ~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~  511 (635)
T 4g8a_A          432 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP  511 (635)
T ss_dssp             EESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred             ccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcCh
Confidence            4433321111  111111111     112223344578999999999975 44567788999999999999999998889


Q ss_pred             hhhhcCCCcCEEEccCCcccccCchhhhhhHhhhccCCCccccCC
Q 044176          318 VSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFARPDLYTNA  362 (362)
Q Consensus       318 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~~~~l~~n~  362 (362)
                      ..|.++++|++|+|++|++++..|..|..+++|++|   ++++|+
T Consensus       512 ~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L---~Ls~N~  553 (635)
T 4g8a_A          512 TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL---DYSLNH  553 (635)
T ss_dssp             TTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEE---ECTTSC
T ss_pred             HHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEE---ECCCCc
Confidence            999999999999999999998888889988888877   777764

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=8.9e-31  Score=228.69  Aligned_cols=249  Identities=26%  Similarity=0.421  Sum_probs=216.1

Q ss_pred             CCCcEEEccCCcCCC--CC---CCCCCCccEEEccC-cccccCCcccccCCCCCCEEEcccCcccccCCCCccccccccc
Q 044176           40 KNITVLNLQNNTIQG--TI---LVPPPSTRAFLFSN-NKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLT  113 (362)
Q Consensus        40 ~~L~~L~l~~n~~~~--~~---~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~  113 (362)
                      .+++.|++++|.+.+  ..   +..+++|++|++++ |.+.+.+|..|.++++|++|++++|.+++.+|..+..+ ++|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l-~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI-KTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGC-TTCC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCC-CCCC
Confidence            578899999998876  33   33489999999995 88988899999999999999999999987888888887 7999


Q ss_pred             EEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCC-CCcEEEccCCCCCCCcchhccCCCCCCeEEccC
Q 044176          114 ILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCT-GLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRS  192 (362)
Q Consensus       114 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  192 (362)
                      +|++++|.+.+.+|..+... ++|++|++++|.+++..|..++.++ .|+.|++++|.+.+..|..+..++ |++|++++
T Consensus       129 ~L~Ls~N~l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~  206 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSISSL-PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR  206 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGC-TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred             EEeCCCCccCCcCChHHhcC-CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC
Confidence            99999999988888888775 8999999999999888899999998 999999999999878888888887 99999999


Q ss_pred             CcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhh
Q 044176          193 NRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLK  272 (362)
Q Consensus       193 n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (362)
                      |.+.+..+..  +..+++|+.|++++|.+.+..+..                                            
T Consensus       207 N~l~~~~~~~--~~~l~~L~~L~L~~N~l~~~~~~~--------------------------------------------  240 (313)
T 1ogq_A          207 NMLEGDASVL--FGSDKNTQKIHLAKNSLAFDLGKV--------------------------------------------  240 (313)
T ss_dssp             SEEEECCGGG--CCTTSCCSEEECCSSEECCBGGGC--------------------------------------------
T ss_pred             CcccCcCCHH--HhcCCCCCEEECCCCceeeecCcc--------------------------------------------
Confidence            9988755544  378899999999999987543321                                            


Q ss_pred             hhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCc-ccc
Q 044176          273 RIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNK-LHG  338 (362)
Q Consensus       273 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~-~~~  338 (362)
                      ..+++|+.|++++|.+++..|..+..+++|+.|++++|++++.+|.. ..+++|+.+++++|+ +.+
T Consensus       241 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             CCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred             cccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence            01578999999999999889999999999999999999999888876 889999999999998 553

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=3.3e-29  Score=220.69  Aligned_cols=269  Identities=18%  Similarity=0.215  Sum_probs=221.5

Q ss_pred             cCCCcEEEccCCcCCCCCCCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcc
Q 044176           39 WKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLN  118 (362)
Q Consensus        39 ~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~  118 (362)
                      ..+++.++++++.++.......+.++.|++++|.+.+..+..|.++++|++|++++|.+++..|..+..+ ++|++|+++
T Consensus        30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls  108 (330)
T 1xku_A           30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPL-VKLERLYLS  108 (330)
T ss_dssp             EEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTC-TTCCEEECC
T ss_pred             cCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCC-CCCCEEECC
Confidence            3479999999998886555557899999999999998877789999999999999999995557778777 799999999


Q ss_pred             cccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCC--CcchhccCCCCCCeEEccCCcCC
Q 044176          119 NNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGD--TFPSWLGSLPGLKILVLRSNRFY  196 (362)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~n~~~  196 (362)
                      +|.+. .+|..+.   ++|++|++++|.+++..+..+..+++|+.|++++|.+..  ..+..+..+++|++|++++|.+.
T Consensus       109 ~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~  184 (330)
T 1xku_A          109 KNQLK-ELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT  184 (330)
T ss_dssp             SSCCS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred             CCcCC-ccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence            99998 6676543   689999999999997777789999999999999999854  55677889999999999999987


Q ss_pred             CccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcc
Q 044176          197 GPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIIT  276 (362)
Q Consensus       197 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (362)
                      ......     .++|++|++++|.+.+..+..+ .                                          .++
T Consensus       185 ~l~~~~-----~~~L~~L~l~~n~l~~~~~~~~-~------------------------------------------~l~  216 (330)
T 1xku_A          185 TIPQGL-----PPSLTELHLDGNKITKVDAASL-K------------------------------------------GLN  216 (330)
T ss_dssp             SCCSSC-----CTTCSEEECTTSCCCEECTGGG-T------------------------------------------TCT
T ss_pred             cCCccc-----cccCCEEECCCCcCCccCHHHh-c------------------------------------------CCC
Confidence            633221     3789999999999885444321 1                                          167


Q ss_pred             cccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCchhhhhh---Hhhhcc
Q 044176          277 IFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDA---EICSSF  353 (362)
Q Consensus       277 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l---~~L~~l  353 (362)
                      +|+.|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|...   .....+
T Consensus       217 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l  295 (330)
T 1xku_A          217 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASY  295 (330)
T ss_dssp             TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCC
T ss_pred             CCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccc
Confidence            8999999999999877778999999999999999999 788899999999999999999998776677543   112333


Q ss_pred             CCCccccC
Q 044176          354 ARPDLYTN  361 (362)
Q Consensus       354 ~~~~l~~n  361 (362)
                      ...++++|
T Consensus       296 ~~l~l~~N  303 (330)
T 1xku_A          296 SGVSLFSN  303 (330)
T ss_dssp             SEEECCSS
T ss_pred             cceEeecC
Confidence            33466666

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.97  E-value=6.6e-29  Score=227.51  Aligned_cols=303  Identities=19%  Similarity=0.156  Sum_probs=235.7

Q ss_pred             ccCCCCcEEEcCCCccccccc-CCcCCCcEEEccCCcCCCCCCCCCCCccEEEccCcccccCCcccccCCCCCCEEEccc
Q 044176           16 QRWKSLTYLDISNNFLTQIEQ-HPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSH   94 (362)
Q Consensus        16 ~~~~~L~~L~ls~~~i~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~   94 (362)
                      ..+++|+.|++++|.+++++. ..+++|++|++++|.+++..+..+++|++|++++|.+.+. +  ++++++|++|++++
T Consensus        39 ~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~  115 (457)
T 3bz5_A           39 EQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDT  115 (457)
T ss_dssp             HHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCS
T ss_pred             hHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEccccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCC
Confidence            345999999999999999875 5789999999999999988777899999999999999864 3  88999999999999


Q ss_pred             CcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCC
Q 044176           95 NNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDT  174 (362)
Q Consensus        95 ~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  174 (362)
                      |+++ .++  +..+ ++|++|++++|++++ ++  +. .+++|++|++++|...+.+  .+..+++|+.|++++|.+++.
T Consensus       116 N~l~-~l~--~~~l-~~L~~L~l~~N~l~~-l~--l~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l  185 (457)
T 3bz5_A          116 NKLT-KLD--VSQN-PLLTYLNCARNTLTE-ID--VS-HNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITEL  185 (457)
T ss_dssp             SCCS-CCC--CTTC-TTCCEEECTTSCCSC-CC--CT-TCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCC
T ss_pred             CcCC-eec--CCCC-CcCCEEECCCCccce-ec--cc-cCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcccee
Confidence            9998 565  5666 799999999999985 43  33 3489999999999654444  577899999999999999763


Q ss_pred             cchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCcc
Q 044176          175 FPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEED  254 (362)
Q Consensus       175 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~  254 (362)
                       +  +..+++|+.|++++|.+++.     .+..+++|++|++++|.+.+ +|   +..+++++.+++.++.......  .
T Consensus       186 -~--l~~l~~L~~L~l~~N~l~~~-----~l~~l~~L~~L~Ls~N~l~~-ip---~~~l~~L~~L~l~~N~l~~~~~--~  251 (457)
T 3bz5_A          186 -D--VSQNKLLNRLNCDTNNITKL-----DLNQNIQLTFLDCSSNKLTE-ID---VTPLTQLTYFDCSVNPLTELDV--S  251 (457)
T ss_dssp             -C--CTTCTTCCEEECCSSCCSCC-----CCTTCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCCCC--T
T ss_pred             -c--cccCCCCCEEECcCCcCCee-----ccccCCCCCEEECcCCcccc-cC---ccccCCCCEEEeeCCcCCCcCH--H
Confidence             3  78899999999999999874     25788999999999999996 45   6678899999998886443321  0


Q ss_pred             ccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchh--------hhhcCCCc
Q 044176          255 YYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPV--------SFANMIVL  326 (362)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~--------~~~~~~~L  326 (362)
                      .+........         ...+|+.|++++|.+.+.+|  ++.+++|+.|++++|...+.+|.        .+..+++|
T Consensus       252 ~l~~L~~L~l---------~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L  320 (457)
T 3bz5_A          252 TLSKLTTLHC---------IQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKL  320 (457)
T ss_dssp             TCTTCCEEEC---------TTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTC
T ss_pred             HCCCCCEEec---------cCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccC
Confidence            0111000000         01346667777776655555  46789999999999986554443        26777999


Q ss_pred             CEEEccCCcccccCchhhhhhHhhhccCCCccccCC
Q 044176          327 ESLDLSSNKLHGRIPEQFVDAEICSSFARPDLYTNA  362 (362)
Q Consensus       327 ~~L~l~~n~~~~~~~~~~~~l~~L~~l~~~~l~~n~  362 (362)
                      ++|++++|++++. +  +..+++|+.|   ++++|+
T Consensus       321 ~~L~L~~N~l~~l-~--l~~l~~L~~L---~l~~N~  350 (457)
T 3bz5_A          321 VYLYLNNTELTEL-D--VSHNTKLKSL---SCVNAH  350 (457)
T ss_dssp             CEEECTTCCCSCC-C--CTTCTTCSEE---ECCSSC
T ss_pred             CEEECCCCccccc-c--cccCCcCcEE---ECCCCC
Confidence            9999999999973 3  6777766666   666653

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=5.5e-29  Score=219.43  Aligned_cols=253  Identities=18%  Similarity=0.246  Sum_probs=210.8

Q ss_pred             CCCcEEEccCCcCCCCCCCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEccc
Q 044176           40 KNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNN  119 (362)
Q Consensus        40 ~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~  119 (362)
                      .+++.++++++.+........++++.|++++|.+....+..|.++++|++|++++|.+++..|..+..+ ++|++|++++
T Consensus        33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~  111 (332)
T 2ft3_A           33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPL-RKLQKLYISK  111 (332)
T ss_dssp             EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTC-TTCCEEECCS
T ss_pred             ccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCc-CCCCEEECCC
Confidence            479999999999886555557899999999999998878889999999999999999985556677776 7999999999


Q ss_pred             ccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCC--CcchhccCCCCCCeEEccCCcCCC
Q 044176          120 NYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGD--TFPSWLGSLPGLKILVLRSNRFYG  197 (362)
Q Consensus       120 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~n~~~~  197 (362)
                      |.+. .+|..+.   ++|++|++++|.++...+..+..+++|+.|++++|.+..  ..+..+..+ +|++|++++|.+++
T Consensus       112 n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~  186 (332)
T 2ft3_A          112 NHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG  186 (332)
T ss_dssp             SCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred             CcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence            9998 6676544   689999999999997666778999999999999999853  556667777 99999999999886


Q ss_pred             ccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhccc
Q 044176          198 PLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITI  277 (362)
Q Consensus       198 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (362)
                      .....     .++|++|++++|.+.+..+.. +.                                          .+++
T Consensus       187 l~~~~-----~~~L~~L~l~~n~i~~~~~~~-l~------------------------------------------~l~~  218 (332)
T 2ft3_A          187 IPKDL-----PETLNELHLDHNKIQAIELED-LL------------------------------------------RYSK  218 (332)
T ss_dssp             CCSSS-----CSSCSCCBCCSSCCCCCCTTS-ST------------------------------------------TCTT
T ss_pred             cCccc-----cCCCCEEECCCCcCCccCHHH-hc------------------------------------------CCCC
Confidence            33321     268999999999887543322 11                                          1677


Q ss_pred             ccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCchhhhhh
Q 044176          278 FTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDA  347 (362)
Q Consensus       278 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l  347 (362)
                      |+.|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|...
T Consensus       219 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~  287 (332)
T 2ft3_A          219 LYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPV  287 (332)
T ss_dssp             CSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCS
T ss_pred             CCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcccc
Confidence            999999999999888888999999999999999999 788889999999999999999998777677653

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.96  E-value=1.1e-27  Score=219.26  Aligned_cols=290  Identities=23%  Similarity=0.266  Sum_probs=181.3

Q ss_pred             CCCcEEEcCCCcccccccCCcCCCcEEEccCCcCCCCCCCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCccc
Q 044176           19 KSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLS   98 (362)
Q Consensus        19 ~~L~~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~   98 (362)
                      ++|+.|++++|.++.++. .+++|+.|++++|.+.+.. ...++|++|++++|.+.+ +| .|+++++|++|++++|+++
T Consensus        91 ~~L~~L~l~~n~l~~lp~-~~~~L~~L~l~~n~l~~l~-~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~  166 (454)
T 1jl5_A           91 PHLESLVASCNSLTELPE-LPQSLKSLLVDNNNLKALS-DLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK  166 (454)
T ss_dssp             TTCSEEECCSSCCSSCCC-CCTTCCEEECCSSCCSCCC-SCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS
T ss_pred             CCCCEEEccCCcCCcccc-ccCCCcEEECCCCccCccc-CCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc
Confidence            556666666666666543 3466777777777666422 123677888888887775 55 4777888888888888777


Q ss_pred             ccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchh
Q 044176           99 GTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSW  178 (362)
Q Consensus        99 ~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  178 (362)
                       .+|...    ++|++|++++|.+.+ +| .+.. +++|++|++++|.+++ +|..   .++|+.|++++|.+. .+| .
T Consensus       167 -~lp~~~----~~L~~L~L~~n~l~~-l~-~~~~-l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~  232 (454)
T 1jl5_A          167 -KLPDLP----PSLEFIAAGNNQLEE-LP-ELQN-LPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-E  232 (454)
T ss_dssp             -CCCCCC----TTCCEEECCSSCCSS-CC-CCTT-CTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-C
T ss_pred             -ccCCCc----ccccEEECcCCcCCc-Cc-cccC-CCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc-c
Confidence             455432    467788888887763 55 3443 4778888888877764 3322   247778888887775 344 3


Q ss_pred             ccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCcccccc
Q 044176          179 LGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQD  258 (362)
Q Consensus       179 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~  258 (362)
                      ++.+++|++|++++|.+.+.. .     .+++|+.|++++|.+.+ .+..    .++++.+++.++....+...... ..
T Consensus       233 ~~~l~~L~~L~l~~N~l~~l~-~-----~~~~L~~L~l~~N~l~~-l~~~----~~~L~~L~ls~N~l~~l~~~~~~-L~  300 (454)
T 1jl5_A          233 LQNLPFLTTIYADNNLLKTLP-D-----LPPSLEALNVRDNYLTD-LPEL----PQSLTFLDVSENIFSGLSELPPN-LY  300 (454)
T ss_dssp             CTTCTTCCEEECCSSCCSSCC-S-----CCTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSCCSEESCCCTT-CC
T ss_pred             cCCCCCCCEEECCCCcCCccc-c-----cccccCEEECCCCcccc-cCcc----cCcCCEEECcCCccCcccCcCCc-CC
Confidence            777888888888888776522 1     13577777777777764 3322    35677777776654433221100 00


Q ss_pred             ceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccc
Q 044176          259 SVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHG  338 (362)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~  338 (362)
                      .+......... +...+++|+.|++++|++++ +|..   +++|+.|++++|+++ .+|.   .+++|++|++++|++++
T Consensus       301 ~L~l~~N~l~~-i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~  371 (454)
T 1jl5_A          301 YLNASSNEIRS-LCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLRE  371 (454)
T ss_dssp             EEECCSSCCSE-ECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSS
T ss_pred             EEECcCCcCCc-ccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCc
Confidence            11111111110 11123578888888888874 4432   577888888888887 3554   46788888888888887


Q ss_pred             --cCchhhhhh
Q 044176          339 --RIPEQFVDA  347 (362)
Q Consensus       339 --~~~~~~~~l  347 (362)
                        .+|..+..+
T Consensus       372 l~~ip~~l~~L  382 (454)
T 1jl5_A          372 FPDIPESVEDL  382 (454)
T ss_dssp             CCCCCTTCCEE
T ss_pred             CCCChHHHHhh
Confidence              567777666

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=2.3e-29  Score=223.81  Aligned_cols=279  Identities=19%  Similarity=0.191  Sum_probs=185.1

Q ss_pred             CCCCcEEEcCCCcccccccCCcCCCcEEEccCCcCCCC---CCCCCCCccEEEccCcccccCCcccccCCCCCCEEEccc
Q 044176           18 WKSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGT---ILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSH   94 (362)
Q Consensus        18 ~~~L~~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~   94 (362)
                      ++.....+++++.++.+|....++|+.|++++|.+++.   .+..+++|++|++++|.+.+..+..|.++++|++|++++
T Consensus        30 C~~~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  109 (353)
T 2z80_A           30 CDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY  109 (353)
T ss_dssp             ECTTSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCCCeEeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC
Confidence            46666678888888888776667788888888777643   244467777777777777766666677777777777777


Q ss_pred             CcccccCCCC-cccccccccEEEcccccccCcchh-hhhcCCCCccEEeccCC-cccCCCchhhhcCCCCcEEEccCCCC
Q 044176           95 NNLSGTIPPC-LGNFSTQLTILHLNNNYLQGRIPD-AFANGSCDLRSLGLNSN-KLRGSFPRYLADCTGLEVVNVGNNMI  171 (362)
Q Consensus        95 ~~~~~~~~~~-l~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~  171 (362)
                      |+++ .++.. +..+ ++|++|++++|++. .+|. .....+++|++|++++| .+....+..+..+++|+.|++++|.+
T Consensus       110 n~l~-~~~~~~~~~l-~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l  186 (353)
T 2z80_A          110 NYLS-NLSSSWFKPL-SSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL  186 (353)
T ss_dssp             SCCS-SCCHHHHTTC-TTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred             CcCC-cCCHhHhCCC-ccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence            7776 55544 3334 56777777777766 3444 22223367777777776 34444455666677777777777776


Q ss_pred             CCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccC
Q 044176          172 GDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQG  251 (362)
Q Consensus       172 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~  251 (362)
                      .+..+..+..+++|++|++++|.+.......  +..+++|+.|++++|.+.+..+... ..                   
T Consensus       187 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~l-~~-------------------  244 (353)
T 2z80_A          187 QSYEPKSLKSIQNVSHLILHMKQHILLLEIF--VDVTSSVECLELRDTDLDTFHFSEL-ST-------------------  244 (353)
T ss_dssp             CEECTTTTTTCSEEEEEEEECSCSTTHHHHH--HHHTTTEEEEEEESCBCTTCCCC------------------------
T ss_pred             CccCHHHHhccccCCeecCCCCccccchhhh--hhhcccccEEECCCCcccccccccc-cc-------------------
Confidence            6655666667777777777777664322221  2345677777777776664322110 00                   


Q ss_pred             CccccccceeeeecCcchHhhhhcccccEEeccCcccCC----CcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcC
Q 044176          252 EEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQG----EIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLE  327 (362)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~----~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~  327 (362)
                                          ....+.++.++++++.+++    .+|..+..+++|+.|++++|+++...+..|..+++|+
T Consensus       245 --------------------~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~  304 (353)
T 2z80_A          245 --------------------GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQ  304 (353)
T ss_dssp             ----------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             --------------------ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCC
Confidence                                0114557777888777765    3567788999999999999999944334468999999


Q ss_pred             EEEccCCcccccCc
Q 044176          328 SLDLSSNKLHGRIP  341 (362)
Q Consensus       328 ~L~l~~n~~~~~~~  341 (362)
                      +|++++|+++...|
T Consensus       305 ~L~L~~N~~~~~~~  318 (353)
T 2z80_A          305 KIWLHTNPWDCSCP  318 (353)
T ss_dssp             EEECCSSCBCCCHH
T ss_pred             EEEeeCCCccCcCC
Confidence            99999999997554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=1.4e-31  Score=246.87  Aligned_cols=360  Identities=17%  Similarity=0.122  Sum_probs=230.6

Q ss_pred             CCCCcccccCCccccccCCCCcEEEcCCCccccccc-------CCcCCCcEEEccCCcCCCCCC----CCCC----CccE
Q 044176            1 LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ-------HPWKNITVLNLQNNTIQGTIL----VPPP----STRA   65 (362)
Q Consensus         1 L~~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~-------~~~~~L~~L~l~~n~~~~~~~----~~~~----~L~~   65 (362)
                      |++|++++.....++..+++|+.|++++|.+++...       ..+++|++|++++|.+.+..+    ..++    +|++
T Consensus        10 Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~   89 (461)
T 1z7x_W           10 IQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQK   89 (461)
T ss_dssp             EESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCE
T ss_pred             hhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeE
Confidence            356777754445556667999999999999885432       356889999999998865221    2233    7999


Q ss_pred             EEccCccccc----CCcccccCCCCCCEEEcccCcccccCCCCccc----ccccccEEEcccccccCcc----hhhhhcC
Q 044176           66 FLFSNNKLFG----QIPPSIYSLSSLEYISLSHNNLSGTIPPCLGN----FSTQLTILHLNNNYLQGRI----PDAFANG  133 (362)
Q Consensus        66 L~l~~~~~~~----~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~----~~~~L~~L~l~~~~~~~~~----~~~~~~~  133 (362)
                      |++++|.+..    .++..+..+++|++|++++|.+++..+..+..    ..++|++|++++|.++...    +..+.. 
T Consensus        90 L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~-  168 (461)
T 1z7x_W           90 LSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRA-  168 (461)
T ss_dssp             EECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHH-
T ss_pred             EEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhh-
Confidence            9999998874    44778889999999999999887432332222    1246999999999887533    444444 


Q ss_pred             CCCccEEeccCCcccCCCchhhh-----cCCCCcEEEccCCCCCCC----cchhccCCCCCCeEEccCCcCCCcccccc-
Q 044176          134 SCDLRSLGLNSNKLRGSFPRYLA-----DCTGLEVVNVGNNMIGDT----FPSWLGSLPGLKILVLRSNRFYGPLCEVN-  203 (362)
Q Consensus       134 ~~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-  203 (362)
                      +++|++|++++|.+++..+..+.     ..+.|+.|++++|.+++.    ++..+..+++|++|++++|.+.+...... 
T Consensus       169 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~  248 (461)
T 1z7x_W          169 KPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELC  248 (461)
T ss_dssp             CTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHH
T ss_pred             CCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHH
Confidence            37899999999887754444443     256899999999888664    35566778889999998887765322111 


Q ss_pred             --ccccCCcccEEeccCCcccCCCc---hhHHhhhhhhhhccccCCCcccccC--Ccccc----ccceeeeecC--cc--
Q 044176          204 --IMLPFEALRIIDLSHNEFTGFLP---RWIFVSLETMKNVDEKGSDGLYMQG--EEDYY----QDSVTVTVKG--RD--  268 (362)
Q Consensus       204 --~~~~~~~L~~L~l~~n~~~~~~~---~~~~~~~~~l~~l~~~~~~~~~~~~--~~~~~----~~~~~~~~~~--~~--  268 (362)
                        .+..+++|++|++++|.+.+...   ...+..+++++.+++.++.......  .....    .....+....  ..  
T Consensus       249 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~  328 (461)
T 1z7x_W          249 PGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA  328 (461)
T ss_dssp             HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred             HHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchH
Confidence              11347788888888888774321   1124557778888887775321100  00000    0111111111  11  


Q ss_pred             -----hHhhhhcccccEEeccCcccCCCcchhhcC-----CCCCcEEEccCCcCcc----CchhhhhcCCCcCEEEccCC
Q 044176          269 -----LVLKRIITIFTTIDLSSNQFQGEIPQVLGD-----FKSLIVLNLSHNGLTG----SIPVSFANMIVLESLDLSSN  334 (362)
Q Consensus       269 -----~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-----~~~L~~L~l~~n~i~~----~~~~~~~~~~~L~~L~l~~n  334 (362)
                           ......+++|+.|++++|.+++..+..+..     .++|++|++++|.+++    .++..+..+++|++|++++|
T Consensus       329 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N  408 (461)
T 1z7x_W          329 CCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN  408 (461)
T ss_dssp             GHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred             HHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCC
Confidence                 112223577888888888877654444432     5688888888888875    56777777888888888888


Q ss_pred             cccccCchhhhh-h----HhhhccCCCccccC
Q 044176          335 KLHGRIPEQFVD-A----EICSSFARPDLYTN  361 (362)
Q Consensus       335 ~~~~~~~~~~~~-l----~~L~~l~~~~l~~n  361 (362)
                      ++++.....+.. +    ..|+.|.+.+++.+
T Consensus       409 ~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~  440 (461)
T 1z7x_W          409 CLGDAGILQLVESVRQPGCLLEQLVLYDIYWS  440 (461)
T ss_dssp             SCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             CCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence            877653333332 1    23556655555543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=3.3e-28  Score=212.01  Aligned_cols=277  Identities=20%  Similarity=0.238  Sum_probs=159.7

Q ss_pred             cEEEcCCCcccccccCCcCCCcEEEccCCcCCCCC---CCCCCCccEEEccCcccccC--CcccccCCCCCCEEEcccCc
Q 044176           22 TYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTI---LVPPPSTRAFLFSNNKLFGQ--IPPSIYSLSSLEYISLSHNN   96 (362)
Q Consensus        22 ~~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~~---~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~L~~~~   96 (362)
                      +.++++++.++.+|....+++++|++++|.+....   +..+++|++|++++|.+...  .+..+..+++|++|++++|.
T Consensus        10 ~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~   89 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG   89 (306)
T ss_dssp             TEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS
T ss_pred             CEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc
Confidence            46788888888887766677888888877766433   34466777777777766522  24555667777777777777


Q ss_pred             ccccCCCCcccccccccEEEcccccccCcch-hhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCC-C
Q 044176           97 LSGTIPPCLGNFSTQLTILHLNNNYLQGRIP-DAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGD-T  174 (362)
Q Consensus        97 ~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~  174 (362)
                      ++ .+|..+..+ ++|++|++++|.+....+ ..+.. +++|++|++++|.+.+..+..+..+++|+.|++++|.+.+ .
T Consensus        90 i~-~l~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  166 (306)
T 2z66_A           90 VI-TMSSNFLGL-EQLEHLDFQHSNLKQMSEFSVFLS-LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF  166 (306)
T ss_dssp             EE-EEEEEEETC-TTCCEEECTTSEEESSTTTTTTTT-CTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred             cc-cChhhcCCC-CCCCEEECCCCcccccccchhhhh-ccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence            76 555555555 567777777776663322 23332 3667777777776665555666666667777766666644 3


Q ss_pred             cchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCcc
Q 044176          175 FPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEED  254 (362)
Q Consensus       175 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~  254 (362)
                      .+..+..+++|++|++++|.+.+..+..  +..+++|++|++++|.+.+..+.. +.                       
T Consensus       167 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~L~~N~l~~~~~~~-~~-----------------------  220 (306)
T 2z66_A          167 LPDIFTELRNLTFLDLSQCQLEQLSPTA--FNSLSSLQVLNMSHNNFFSLDTFP-YK-----------------------  220 (306)
T ss_dssp             ECSCCTTCTTCCEEECTTSCCCEECTTT--TTTCTTCCEEECTTSCCSBCCSGG-GT-----------------------
T ss_pred             chhHHhhCcCCCEEECCCCCcCCcCHHH--hcCCCCCCEEECCCCccCccChhh-cc-----------------------
Confidence            4555666666666666666665433332  245556666666666655322211 00                       


Q ss_pred             ccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCC-CCCcEEEccCCcCccCch--hhhhcCCCcCEEEc
Q 044176          255 YYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDF-KSLIVLNLSHNGLTGSIP--VSFANMIVLESLDL  331 (362)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~-~~L~~L~l~~n~i~~~~~--~~~~~~~~L~~L~l  331 (362)
                                         .+++|+.|++++|++++..+..+..+ ++|+.|++++|.+...-.  .....+...+.+.+
T Consensus       221 -------------------~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~  281 (306)
T 2z66_A          221 -------------------CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLV  281 (306)
T ss_dssp             -------------------TCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBS
T ss_pred             -------------------CcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhc
Confidence                               04456666666666665555555555 356666666666553211  11122223333344


Q ss_pred             cCCcccccCchhhhh
Q 044176          332 SSNKLHGRIPEQFVD  346 (362)
Q Consensus       332 ~~n~~~~~~~~~~~~  346 (362)
                      ..+.+.-..|+.+.+
T Consensus       282 ~~~~~~C~~p~~~~g  296 (306)
T 2z66_A          282 EVERMECATPSDKQG  296 (306)
T ss_dssp             CGGGCBEEESGGGTT
T ss_pred             cccccccCCchhhCC
Confidence            444444444544444

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.96  E-value=1.1e-26  Score=218.97  Aligned_cols=271  Identities=21%  Similarity=0.260  Sum_probs=166.8

Q ss_pred             CCcEEEcCCCcccccccCCcCCCcEEEccCCcCCCCCCCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccc
Q 044176           20 SLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSG   99 (362)
Q Consensus        20 ~L~~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~   99 (362)
                      +++.|+++++.++.++....++|+.|++++|.++.... .+++|++|++++|.++. +|.   .+++|++|++++|.++ 
T Consensus        41 ~l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~~lp~-~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~-  114 (622)
T 3g06_A           41 GNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPA-LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLT-  114 (622)
T ss_dssp             CCCEEECCSSCCSCCCSCCCTTCSEEEECSCCCSCCCC-CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCC-
T ss_pred             CCcEEEecCCCcCccChhhCCCCcEEEecCCCCCCCCC-cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCC-
Confidence            45666666666666655444566666666666553322 45666666666666653 333   4566666666666665 


Q ss_pred             cCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhc
Q 044176          100 TIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWL  179 (362)
Q Consensus       100 ~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~  179 (362)
                      .+|.    ..++|+.|++++|.++ .+|..    .++|++|++++|.+++ +|.   .+.+|+.|++++|.++. ++   
T Consensus       115 ~l~~----~l~~L~~L~L~~N~l~-~lp~~----l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---  177 (622)
T 3g06_A          115 HLPA----LPSGLCKLWIFGNQLT-SLPVL----PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP---  177 (622)
T ss_dssp             CCCC----CCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC---
T ss_pred             CCCC----CCCCcCEEECCCCCCC-cCCCC----CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---
Confidence            4444    1245666666666655 34432    2556666666666553 222   23456666666666543 22   


Q ss_pred             cCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccc
Q 044176          180 GSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDS  259 (362)
Q Consensus       180 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~  259 (362)
                      ..+++|+.|++++|.+.+...      .+++|+.|++++|.+.. ++.    .+++|+.+++.++....++         
T Consensus       178 ~~~~~L~~L~Ls~N~l~~l~~------~~~~L~~L~L~~N~l~~-l~~----~~~~L~~L~Ls~N~L~~lp---------  237 (622)
T 3g06_A          178 MLPSGLQELSVSDNQLASLPT------LPSELYKLWAYNNRLTS-LPA----LPSGLKELIVSGNRLTSLP---------  237 (622)
T ss_dssp             CCCTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCSS-CCC----CCTTCCEEECCSSCCSCCC---------
T ss_pred             ccCCCCcEEECCCCCCCCCCC------ccchhhEEECcCCcccc-cCC----CCCCCCEEEccCCccCcCC---------
Confidence            334566666666666554211      12456666666666552 221    1245555555554322111         


Q ss_pred             eeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCccccc
Q 044176          260 VTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGR  339 (362)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~  339 (362)
                                   ..+++|+.|++++|+++. +|.   .+++|+.|++++|+++ .+|..+..+++|+.|++++|++++.
T Consensus       238 -------------~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~  299 (622)
T 3g06_A          238 -------------VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER  299 (622)
T ss_dssp             -------------CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHH
T ss_pred             -------------CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCc
Confidence                         115789999999999984 444   5789999999999999 6788999999999999999999998


Q ss_pred             CchhhhhhHhhh
Q 044176          340 IPEQFVDAEICS  351 (362)
Q Consensus       340 ~~~~~~~l~~L~  351 (362)
                      .|..+..++...
T Consensus       300 ~~~~l~~L~~~~  311 (622)
T 3g06_A          300 TLQALREITSAP  311 (622)
T ss_dssp             HHHHHHHHHHST
T ss_pred             CHHHHHhccccc
Confidence            888888776543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=1.9e-30  Score=239.28  Aligned_cols=331  Identities=18%  Similarity=0.180  Sum_probs=206.0

Q ss_pred             ccCCCCcEEEcCCCccccccc----CCcC----CCcEEEccCCcCCC-------CCCCCCCCccEEEccCcccccCCccc
Q 044176           16 QRWKSLTYLDISNNFLTQIEQ----HPWK----NITVLNLQNNTIQG-------TILVPPPSTRAFLFSNNKLFGQIPPS   80 (362)
Q Consensus        16 ~~~~~L~~L~ls~~~i~~~~~----~~~~----~L~~L~l~~n~~~~-------~~~~~~~~L~~L~l~~~~~~~~~~~~   80 (362)
                      ..+++|+.|++++|.+++...    ..++    +|++|++++|.+.+       ..+..+++|++|++++|.+.+..+..
T Consensus        53 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~  132 (461)
T 1z7x_W           53 RVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQL  132 (461)
T ss_dssp             HTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHH
T ss_pred             HhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHH
Confidence            335888888888888776433    2333    68888888888773       23455788888888888876543333


Q ss_pred             cc-----CCCCCCEEEcccCccccc----CCCCcccccccccEEEcccccccCcchhhhhc----CCCCccEEeccCCcc
Q 044176           81 IY-----SLSSLEYISLSHNNLSGT----IPPCLGNFSTQLTILHLNNNYLQGRIPDAFAN----GSCDLRSLGLNSNKL  147 (362)
Q Consensus        81 ~~-----~l~~L~~L~L~~~~~~~~----~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~----~~~~L~~L~l~~~~~  147 (362)
                      +.     ..++|++|++++|.+++.    ++..+..+ ++|++|++++|.+....+..+..    ..++|++|++++|.+
T Consensus       133 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l  211 (461)
T 1z7x_W          133 LCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAK-PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGV  211 (461)
T ss_dssp             HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHC-TTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCC
T ss_pred             HHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhC-CCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCC
Confidence            32     245788888888887742    23333344 57888888888776443333332    234788888888877


Q ss_pred             cCC----CchhhhcCCCCcEEEccCCCCCCCcc-----hhccCCCCCCeEEccCCcCCCcccc--ccccccCCcccEEec
Q 044176          148 RGS----FPRYLADCTGLEVVNVGNNMIGDTFP-----SWLGSLPGLKILVLRSNRFYGPLCE--VNIMLPFEALRIIDL  216 (362)
Q Consensus       148 ~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~-----~~~~~~~~L~~L~l~~n~~~~~~~~--~~~~~~~~~L~~L~l  216 (362)
                      ++.    ++..+..+++|+.|++++|.+.+...     ..+..+++|++|++++|.+++....  ...+..+++|++|++
T Consensus       212 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L  291 (461)
T 1z7x_W          212 TSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSL  291 (461)
T ss_dssp             BTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEEC
T ss_pred             cHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEEC
Confidence            753    35566677888888888887754321     2223577888888888877643211  112345677888888


Q ss_pred             cCCcccCCCchhHHhhh----hhhhhccccCCCccccc-----CCccccccceeeeecCc--ch----Hhhh----hccc
Q 044176          217 SHNEFTGFLPRWIFVSL----ETMKNVDEKGSDGLYMQ-----GEEDYYQDSVTVTVKGR--DL----VLKR----IITI  277 (362)
Q Consensus       217 ~~n~~~~~~~~~~~~~~----~~l~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~--~~----~~~~----~~~~  277 (362)
                      ++|.+.+..+..+...+    ++++.+++.++......     ...........+.....  ..    .+..    ..++
T Consensus       292 s~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~  371 (461)
T 1z7x_W          292 AGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSV  371 (461)
T ss_dssp             TTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCC
T ss_pred             CCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCc
Confidence            87777643333322221    46777777766532211     00000111111111111  11    1111    1469


Q ss_pred             ccEEeccCcccCC----CcchhhcCCCCCcEEEccCCcCccCchhhhh-----cCCCcCEEEccCCcccccCchhhhhh
Q 044176          278 FTTIDLSSNQFQG----EIPQVLGDFKSLIVLNLSHNGLTGSIPVSFA-----NMIVLESLDLSSNKLHGRIPEQFVDA  347 (362)
Q Consensus       278 L~~L~l~~n~~~~----~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~-----~~~~L~~L~l~~n~~~~~~~~~~~~l  347 (362)
                      |+.|++++|.+++    .++..+..+++|++|++++|.+++.....+.     ....|+.|++.++.+....++.+..+
T Consensus       372 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~l  450 (461)
T 1z7x_W          372 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL  450 (461)
T ss_dssp             CCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHH
T ss_pred             eEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHHHHHH
Confidence            9999999999986    5677888899999999999999865444332     23479999999988876555554443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=1e-27  Score=213.12  Aligned_cols=274  Identities=14%  Similarity=0.146  Sum_probs=215.9

Q ss_pred             CcCCCcEEEccCCcCCCCCCCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEc
Q 044176           38 PWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHL  117 (362)
Q Consensus        38 ~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l  117 (362)
                      .|+.....+.+++.++.....-.++|++|++++|.+....+..|.++++|++|++++|.+++..+..+..+ ++|++|++
T Consensus        29 ~C~~~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L  107 (353)
T 2z80_A           29 SCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSL-GSLEHLDL  107 (353)
T ss_dssp             EECTTSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTC-TTCCEEEC
T ss_pred             CCCCCeEeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCC-CCCCEEEC
Confidence            45666678888888887665557899999999999998777789999999999999999995445667666 79999999


Q ss_pred             ccccccCcchhhhhcCCCCccEEeccCCcccCCCc-hhhhcCCCCcEEEccCC-CCCCCcchhccCCCCCCeEEccCCcC
Q 044176          118 NNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFP-RYLADCTGLEVVNVGNN-MIGDTFPSWLGSLPGLKILVLRSNRF  195 (362)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~n~~  195 (362)
                      ++|.++ .+|......+++|++|++++|.++...+ ..+..+++|+.|++++| .+.+..+..+..+++|++|++++|.+
T Consensus       108 s~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l  186 (353)
T 2z80_A          108 SYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL  186 (353)
T ss_dssp             CSSCCS-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred             CCCcCC-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence            999998 4555533345899999999999985444 47889999999999998 46555567788999999999999998


Q ss_pred             CCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhc
Q 044176          196 YGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRII  275 (362)
Q Consensus       196 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (362)
                      .+..+..  +..+++|++|++++|.+. ..+...+.                                          .+
T Consensus       187 ~~~~~~~--l~~l~~L~~L~l~~n~l~-~~~~~~~~------------------------------------------~~  221 (353)
T 2z80_A          187 QSYEPKS--LKSIQNVSHLILHMKQHI-LLLEIFVD------------------------------------------VT  221 (353)
T ss_dssp             CEECTTT--TTTCSEEEEEEEECSCST-THHHHHHH------------------------------------------HT
T ss_pred             CccCHHH--HhccccCCeecCCCCccc-cchhhhhh------------------------------------------hc
Confidence            8754544  377899999999999875 33332221                                          15


Q ss_pred             ccccEEeccCcccCCCcchhh---cCCCCCcEEEccCCcCcc----CchhhhhcCCCcCEEEccCCcccccCchh-hhhh
Q 044176          276 TIFTTIDLSSNQFQGEIPQVL---GDFKSLIVLNLSHNGLTG----SIPVSFANMIVLESLDLSSNKLHGRIPEQ-FVDA  347 (362)
Q Consensus       276 ~~L~~L~l~~n~~~~~~~~~~---~~~~~L~~L~l~~n~i~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~l  347 (362)
                      ++|+.|++++|.+++..+..+   ...+.++.++++++.+.+    .+|..+..+++|++|++++|+++ .+|.. |..+
T Consensus       222 ~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l  300 (353)
T 2z80_A          222 SSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRL  300 (353)
T ss_dssp             TTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTC
T ss_pred             ccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcC
Confidence            678999999999987654433   346778999999998875    46778999999999999999999 55654 5788


Q ss_pred             HhhhccCCCccccCC
Q 044176          348 EICSSFARPDLYTNA  362 (362)
Q Consensus       348 ~~L~~l~~~~l~~n~  362 (362)
                      ++|++|   ++++|+
T Consensus       301 ~~L~~L---~L~~N~  312 (353)
T 2z80_A          301 TSLQKI---WLHTNP  312 (353)
T ss_dssp             TTCCEE---ECCSSC
T ss_pred             CCCCEE---EeeCCC
Confidence            777777   777764

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.95  E-value=9.9e-27  Score=212.90  Aligned_cols=306  Identities=24%  Similarity=0.295  Sum_probs=200.8

Q ss_pred             CCCCcccccCCccccccCCCCcEEEcCCCcccccccCCcCCCcEEEccCCcCCCCC-CCCCCCccEEEccCcccccCCcc
Q 044176            1 LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTI-LVPPPSTRAFLFSNNKLFGQIPP   79 (362)
Q Consensus         1 L~~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~   79 (362)
                      |++|++++ +|..    +++|+.|++++|+++.++.. .++|++|++++|.+++.. +..+++|++|++++|.+.+ +|.
T Consensus        98 l~~n~l~~-lp~~----~~~L~~L~l~~n~l~~l~~~-~~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~-lp~  170 (454)
T 1jl5_A           98 ASCNSLTE-LPEL----PQSLKSLLVDNNNLKALSDL-PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK-LPD  170 (454)
T ss_dssp             CCSSCCSS-CCCC----CTTCCEEECCSSCCSCCCSC-CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSC-CCC
T ss_pred             ccCCcCCc-cccc----cCCCcEEECCCCccCcccCC-CCCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcc-cCC
Confidence            56788884 7653    37899999999999887653 368999999999888632 4458899999999998885 454


Q ss_pred             cccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCC
Q 044176           80 SIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCT  159 (362)
Q Consensus        80 ~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~  159 (362)
                      .   ..+|++|++++|+++ .+| .+..+ ++|++|++++|.+.+ +|..    .++|++|++++|.++ .+| .++.++
T Consensus       171 ~---~~~L~~L~L~~n~l~-~l~-~~~~l-~~L~~L~l~~N~l~~-l~~~----~~~L~~L~l~~n~l~-~lp-~~~~l~  237 (454)
T 1jl5_A          171 L---PPSLEFIAAGNNQLE-ELP-ELQNL-PFLTAIYADNNSLKK-LPDL----PLSLESIVAGNNILE-ELP-ELQNLP  237 (454)
T ss_dssp             C---CTTCCEEECCSSCCS-SCC-CCTTC-TTCCEEECCSSCCSS-CCCC----CTTCCEEECCSSCCS-SCC-CCTTCT
T ss_pred             C---cccccEEECcCCcCC-cCc-cccCC-CCCCEEECCCCcCCc-CCCC----cCcccEEECcCCcCC-ccc-ccCCCC
Confidence            3   358999999999998 566 56666 789999999998873 4543    257899999999888 556 488899


Q ss_pred             CCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhc
Q 044176          160 GLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNV  239 (362)
Q Consensus       160 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l  239 (362)
                      +|+.|++++|.+.+ .|.   .+++|++|++++|.+.+. +.     .+++|++|++++|.+.+. +.    ..++++.+
T Consensus       238 ~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~l-~~-----~~~~L~~L~ls~N~l~~l-~~----~~~~L~~L  302 (454)
T 1jl5_A          238 FLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTDL-PE-----LPQSLTFLDVSENIFSGL-SE----LPPNLYYL  302 (454)
T ss_dssp             TCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSCC-CC-----CCTTCCEEECCSSCCSEE-SC----CCTTCCEE
T ss_pred             CCCEEECCCCcCCc-ccc---cccccCEEECCCCccccc-Cc-----ccCcCCEEECcCCccCcc-cC----cCCcCCEE
Confidence            99999999998864 333   247888999998888762 22     136788888888887752 11    11466677


Q ss_pred             cccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCcc--Cch
Q 044176          240 DEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTG--SIP  317 (362)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~--~~~  317 (362)
                      ++.++....+...... ...+........ .++..+++|+.|++++|++++ +|.   .+++|+.|++++|++++  .+|
T Consensus       303 ~l~~N~l~~i~~~~~~-L~~L~Ls~N~l~-~lp~~~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip  376 (454)
T 1jl5_A          303 NASSNEIRSLCDLPPS-LEELNVSNNKLI-ELPALPPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIP  376 (454)
T ss_dssp             ECCSSCCSEECCCCTT-CCEEECCSSCCS-CCCCCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCC
T ss_pred             ECcCCcCCcccCCcCc-CCEEECCCCccc-cccccCCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCCh
Confidence            7766654433221100 011111111111 122336889999999999984 554   47899999999999997  678


Q ss_pred             hhhhcC-------------CCcCEEEccCCcccc--cCchhhhhh
Q 044176          318 VSFANM-------------IVLESLDLSSNKLHG--RIPEQFVDA  347 (362)
Q Consensus       318 ~~~~~~-------------~~L~~L~l~~n~~~~--~~~~~~~~l  347 (362)
                      .++..+             ++|++|++++|++++  .+|.++..+
T Consensus       377 ~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~~L  421 (454)
T 1jl5_A          377 ESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVEDL  421 (454)
T ss_dssp             TTCCEEECCC-----------------------------------
T ss_pred             HHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhHhhe
Confidence            888877             899999999999997  667655443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=1.1e-27  Score=208.83  Aligned_cols=250  Identities=20%  Similarity=0.202  Sum_probs=206.6

Q ss_pred             CcEEEccCCcCCCCCCCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccc--cCCCCcccccccccEEEccc
Q 044176           42 ITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSG--TIPPCLGNFSTQLTILHLNN  119 (362)
Q Consensus        42 L~~L~l~~n~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~--~~~~~l~~~~~~L~~L~l~~  119 (362)
                      -+.++.+++.++.......+++++|++++|.+....+..|.++++|++|++++|.++.  ..+..+..+ ++|++|++++
T Consensus         9 ~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~-~~L~~L~Ls~   87 (306)
T 2z66_A            9 GTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT-TSLKYLDLSF   87 (306)
T ss_dssp             TTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSC-SCCCEEECCS
T ss_pred             CCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccc-cccCEEECCC
Confidence            3577888888776665557899999999999996666668999999999999999872  124455555 7899999999


Q ss_pred             ccccCcchhhhhcCCCCccEEeccCCcccCCCc-hhhhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCC-
Q 044176          120 NYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFP-RYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYG-  197 (362)
Q Consensus       120 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-  197 (362)
                      |.+. .+|..+... ++|++|++++|.+++..+ ..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+ 
T Consensus        88 n~i~-~l~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  165 (306)
T 2z66_A           88 NGVI-TMSSNFLGL-EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN  165 (306)
T ss_dssp             CSEE-EEEEEEETC-TTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred             Cccc-cChhhcCCC-CCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence            9987 577766654 899999999999986544 578899999999999999987788888999999999999998875 


Q ss_pred             ccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhccc
Q 044176          198 PLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITI  277 (362)
Q Consensus       198 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (362)
                      ..+..  +..+++|++|++++|.+.+..+..+ .                                          .+++
T Consensus       166 ~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~-~------------------------------------------~l~~  200 (306)
T 2z66_A          166 FLPDI--FTELRNLTFLDLSQCQLEQLSPTAF-N------------------------------------------SLSS  200 (306)
T ss_dssp             EECSC--CTTCTTCCEEECTTSCCCEECTTTT-T------------------------------------------TCTT
T ss_pred             cchhH--HhhCcCCCEEECCCCCcCCcCHHHh-c------------------------------------------CCCC
Confidence            23333  4778999999999999875444321 1                                          1678


Q ss_pred             ccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCC-CcCEEEccCCccccc
Q 044176          278 FTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMI-VLESLDLSSNKLHGR  339 (362)
Q Consensus       278 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~-~L~~L~l~~n~~~~~  339 (362)
                      |+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+..++ +|++|++++|+++..
T Consensus       201 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          201 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  263 (306)
T ss_dssp             CCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred             CCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence            99999999999987777889999999999999999988888999985 999999999999864

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=3.3e-27  Score=207.30  Aligned_cols=225  Identities=19%  Similarity=0.202  Sum_probs=148.4

Q ss_pred             CCccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEE
Q 044176           61 PSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSL  140 (362)
Q Consensus        61 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  140 (362)
                      ++++.|++++|.+. .+|..+.++++|++|++++|.++ .+|..+..+ ++|++|++++|.+. .+|..+... ++|++|
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l-~~L~~L~Ls~n~l~-~lp~~l~~l-~~L~~L  155 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQF-AGLETLTLARNPLR-ALPASIASL-NRLREL  155 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGG-TTCSEEEEESCCCC-CCCGGGGGC-TTCCEE
T ss_pred             cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhcc-CCCCEEECCCCccc-cCcHHHhcC-cCCCEE
Confidence            55666666666666 55666666777777777777776 677666666 56777777777776 566666554 677777


Q ss_pred             eccCCcccCCCchhhh---------cCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcc
Q 044176          141 GLNSNKLRGSFPRYLA---------DCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEAL  211 (362)
Q Consensus       141 ~l~~~~~~~~~~~~~~---------~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L  211 (362)
                      ++++|.+.+.+|..+.         .+++|+.|++++|.++ .+|..++.+++|++|++++|.+.+..+   .+..+++|
T Consensus       156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~---~l~~l~~L  231 (328)
T 4fcg_A          156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGP---AIHHLPKL  231 (328)
T ss_dssp             EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCG---GGGGCTTC
T ss_pred             ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCch---hhccCCCC
Confidence            7777666555555544         3677777777777765 455666677777777777777665332   23556677


Q ss_pred             cEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCcccCCC
Q 044176          212 RIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGE  291 (362)
Q Consensus       212 ~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  291 (362)
                      ++|++++|.+.+..|..+ .                                          .+++|+.|++++|.+.+.
T Consensus       232 ~~L~Ls~n~~~~~~p~~~-~------------------------------------------~l~~L~~L~L~~n~~~~~  268 (328)
T 4fcg_A          232 EELDLRGCTALRNYPPIF-G------------------------------------------GRAPLKRLILKDCSNLLT  268 (328)
T ss_dssp             CEEECTTCTTCCBCCCCT-T------------------------------------------CCCCCCEEECTTCTTCCB
T ss_pred             CEEECcCCcchhhhHHHh-c------------------------------------------CCCCCCEEECCCCCchhh
Confidence            777777766655444321 0                                          145677777777776666


Q ss_pred             cchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCccc
Q 044176          292 IPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLH  337 (362)
Q Consensus       292 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~  337 (362)
                      +|..+..+++|+.|+|++|.+.+.+|..+..+++|+.+++..+.+.
T Consensus       269 ~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          269 LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             CCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             cchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            7766777777777777777777777777777777777777665544

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=5.4e-27  Score=202.22  Aligned_cols=270  Identities=17%  Similarity=0.142  Sum_probs=156.0

Q ss_pred             cEEEcCCCcccccccCCcCCCcEEEccCCcCCCCCCCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccccC
Q 044176           22 TYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTI  101 (362)
Q Consensus        22 ~~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~  101 (362)
                      +.++++++.++.++....++++.|++++|.                     +....+..|.++++|++|++++|.+++..
T Consensus        14 ~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~---------------------i~~~~~~~~~~~~~L~~L~l~~n~l~~~~   72 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGIPAASQRIFLHGNR---------------------ISHVPAASFRACRNLTILWLHSNVLARID   72 (285)
T ss_dssp             CEEECCSSCCSSCCTTCCTTCSEEECTTSC---------------------CCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             eEEEcCcCCcccCCcCCCCCceEEEeeCCc---------------------CCccCHHHcccCCCCCEEECCCCccceeC
Confidence            455666666666555444455555555554                     44444445566666666666666665333


Q ss_pred             CCCcccccccccEEEccccc-ccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhcc
Q 044176          102 PPCLGNFSTQLTILHLNNNY-LQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLG  180 (362)
Q Consensus       102 ~~~l~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~  180 (362)
                      +..+..+ ++|++|++++|. +....|..+.. +++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..++
T Consensus        73 ~~~~~~l-~~L~~L~l~~n~~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  150 (285)
T 1ozn_A           73 AAAFTGL-ALLEQLDLSDNAQLRSVDPATFHG-LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR  150 (285)
T ss_dssp             TTTTTTC-TTCCEEECCSCTTCCCCCTTTTTT-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             HhhcCCc-cCCCEEeCCCCCCccccCHHHhcC-CcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhc
Confidence            4444444 456666666665 44322344433 35666666666666655555666666777777777666555555566


Q ss_pred             CCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccce
Q 044176          181 SLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSV  260 (362)
Q Consensus       181 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~  260 (362)
                      .+++|++|++++|.+++..+..  +..+++|++|++++|.+.+..+..+ .                             
T Consensus       151 ~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~-~-----------------------------  198 (285)
T 1ozn_A          151 DLGNLTHLFLHGNRISSVPERA--FRGLHSLDRLLLHQNRVAHVHPHAF-R-----------------------------  198 (285)
T ss_dssp             TCTTCCEEECCSSCCCEECTTT--TTTCTTCCEEECCSSCCCEECTTTT-T-----------------------------
T ss_pred             cCCCccEEECCCCcccccCHHH--hcCccccCEEECCCCcccccCHhHc-c-----------------------------
Confidence            6677777777776665433322  3556677777777776654333221 1                             


Q ss_pred             eeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccC
Q 044176          261 TVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRI  340 (362)
Q Consensus       261 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~  340 (362)
                                   .+++|+.|++++|.+++..+..+..+++|+.|++++|.+....+. ......++.+..+.+.+....
T Consensus       199 -------------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~-~~~~~~l~~~~~~~~~~~c~~  264 (285)
T 1ozn_A          199 -------------DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSL  264 (285)
T ss_dssp             -------------TCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG-HHHHHHHHHCCSEECCCBEEE
T ss_pred             -------------CcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc-HHHHHHHHhcccccCccccCC
Confidence                         145677778888877766666677778888888888877632221 111123444446666666667


Q ss_pred             chhhhhhHhhhccCCCccccC
Q 044176          341 PEQFVDAEICSSFARPDLYTN  361 (362)
Q Consensus       341 ~~~~~~l~~L~~l~~~~l~~n  361 (362)
                      |+.+.+. .+..+...+++|-
T Consensus       265 p~~l~g~-~l~~l~~~~l~~C  284 (285)
T 1ozn_A          265 PQRLAGR-DLKRLAANDLQGC  284 (285)
T ss_dssp             SGGGTTC-BGGGSCGGGSCCC
T ss_pred             chHhCCc-ChhhcCHHHhccC
Confidence            7766553 3455555565553

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=5e-27  Score=206.12  Aligned_cols=221  Identities=19%  Similarity=0.236  Sum_probs=193.3

Q ss_pred             CCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcE
Q 044176           84 LSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEV  163 (362)
Q Consensus        84 l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  163 (362)
                      ..++++|++++|.++ .+|..++.+ ++|++|++++|.+. .+|..+... ++|++|++++|.++ .+|..+..+++|+.
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l-~~L~~L~L~~n~l~-~lp~~~~~l-~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~  154 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRL-SHLQHMTIDAAGLM-ELPDTMQQF-AGLETLTLARNPLR-ALPASIASLNRLRE  154 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGG-TTCSEEEEESSCCC-CCCSCGGGG-TTCSEEEEESCCCC-CCCGGGGGCTTCCE
T ss_pred             ccceeEEEccCCCch-hcChhhhhC-CCCCEEECCCCCcc-chhHHHhcc-CCCCEEECCCCccc-cCcHHHhcCcCCCE
Confidence            578999999999999 899999987 79999999999998 888888765 89999999999998 77889999999999


Q ss_pred             EEccCCCCCCCcchhccC---------CCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhh
Q 044176          164 VNVGNNMIGDTFPSWLGS---------LPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLE  234 (362)
Q Consensus       164 L~l~~~~~~~~~~~~~~~---------~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~  234 (362)
                      |++++|...+..|..+..         +++|++|++++|.+.. .+..  +..+++|++|++++|.+.+ .+.. +.   
T Consensus       155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-lp~~--l~~l~~L~~L~L~~N~l~~-l~~~-l~---  226 (328)
T 4fcg_A          155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-LPAS--IANLQNLKSLKIRNSPLSA-LGPA-IH---  226 (328)
T ss_dssp             EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCC-CCGG--GGGCTTCCEEEEESSCCCC-CCGG-GG---
T ss_pred             EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCc-chHh--hcCCCCCCEEEccCCCCCc-Cchh-hc---
Confidence            999998877777776554         8999999999998874 3433  4778899999999999884 3322 11   


Q ss_pred             hhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCcc
Q 044176          235 TMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTG  314 (362)
Q Consensus       235 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~  314 (362)
                                                             .+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+
T Consensus       227 ---------------------------------------~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~  267 (328)
T 4fcg_A          227 ---------------------------------------HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL  267 (328)
T ss_dssp             ---------------------------------------GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCC
T ss_pred             ---------------------------------------cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchh
Confidence                                                   16789999999999998999999999999999999999998


Q ss_pred             CchhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhccCCC
Q 044176          315 SIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFARP  356 (362)
Q Consensus       315 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~~~  356 (362)
                      .+|..+..+++|++|++++|++.+.+|+.+..++.++.+.+.
T Consensus       268 ~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~  309 (328)
T 4fcg_A          268 TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP  309 (328)
T ss_dssp             BCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred             hcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence            999999999999999999999999999999999998888554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=1.6e-26  Score=212.22  Aligned_cols=248  Identities=20%  Similarity=0.198  Sum_probs=184.2

Q ss_pred             CcEEEccCCcCCCCCCCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEccccc
Q 044176           42 ITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNY  121 (362)
Q Consensus        42 L~~L~l~~n~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  121 (362)
                      .+.++.++..++.....-.++++.|++++|.+....+..|.++++|++|++++|.+++..+..+..+ ++|++|++++|.
T Consensus        56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~L~~n~  134 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGL-ASLNTLELFDNW  134 (452)
T ss_dssp             SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC-TTCCEEECCSSC
T ss_pred             CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCc-ccCCEEECCCCc
Confidence            4556666666555443335677788888888877777788888888888888888874444555555 688888888888


Q ss_pred             ccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCC-CCCCcchhccCCCCCCeEEccCCcCCCccc
Q 044176          122 LQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNM-IGDTFPSWLGSLPGLKILVLRSNRFYGPLC  200 (362)
Q Consensus       122 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  200 (362)
                      +. .+|......+++|++|++++|.++...+..+..+++|+.|++++|. +....+..+..+++|++|++++|.+.+.. 
T Consensus       135 l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-  212 (452)
T 3zyi_A          135 LT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-  212 (452)
T ss_dssp             CS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-
T ss_pred             CC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-
Confidence            87 4444433345788888888888886556678888888888888854 43333446778888999999988887632 


Q ss_pred             cccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccccE
Q 044176          201 EVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTT  280 (362)
Q Consensus       201 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  280 (362)
                         .+..+++|++|++++|.+.+..+.. +.                                          .+++|+.
T Consensus       213 ---~~~~l~~L~~L~Ls~N~l~~~~~~~-~~------------------------------------------~l~~L~~  246 (452)
T 3zyi_A          213 ---NLTPLVGLEELEMSGNHFPEIRPGS-FH------------------------------------------GLSSLKK  246 (452)
T ss_dssp             ---CCTTCTTCCEEECTTSCCSEECGGG-GT------------------------------------------TCTTCCE
T ss_pred             ---cccccccccEEECcCCcCcccCccc-cc------------------------------------------CccCCCE
Confidence               2467788999999998887544433 11                                          1567888


Q ss_pred             EeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccc
Q 044176          281 IDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHG  338 (362)
Q Consensus       281 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~  338 (362)
                      |++++|.+++..+..+..+++|+.|+|++|++++..+..+..+++|+.|++++|++.-
T Consensus       247 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          247 LWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC  304 (452)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred             EEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence            9999998887778888888999999999999987767778888999999999988653

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=2.4e-26  Score=210.35  Aligned_cols=246  Identities=20%  Similarity=0.195  Sum_probs=148.7

Q ss_pred             cEEEccCCcCCCCCCCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccc
Q 044176           43 TVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYL  122 (362)
Q Consensus        43 ~~L~l~~n~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~  122 (362)
                      +.++..+..++.....-.++++.|++++|.+....+..|.++++|++|++++|.++...+..+..+ ++|++|++++|.+
T Consensus        46 ~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l-~~L~~L~L~~n~l  124 (440)
T 3zyj_A           46 SKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGL-ANLNTLELFDNRL  124 (440)
T ss_dssp             CEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTC-SSCCEEECCSSCC
T ss_pred             CEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCC-ccCCEEECCCCcC
Confidence            344444444443333334455555555555555555566666666666666666662222333333 5666666666666


Q ss_pred             cCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCC-CCCCcchhccCCCCCCeEEccCCcCCCcccc
Q 044176          123 QGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNM-IGDTFPSWLGSLPGLKILVLRSNRFYGPLCE  201 (362)
Q Consensus       123 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~  201 (362)
                      + .++......+++|++|++++|.++...+..+..+++|+.|++++|. +....+..+..+++|++|++++|.+....  
T Consensus       125 ~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--  201 (440)
T 3zyj_A          125 T-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP--  201 (440)
T ss_dssp             S-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC--
T ss_pred             C-eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc--
Confidence            5 3333222233666666666666665445566667777777776643 32223335666777777777777666422  


Q ss_pred             ccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEE
Q 044176          202 VNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTI  281 (362)
Q Consensus       202 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L  281 (362)
                        .+..+++|++|++++|.+.+..+.. +.                                          .+++|+.|
T Consensus       202 --~~~~l~~L~~L~Ls~N~l~~~~~~~-~~------------------------------------------~l~~L~~L  236 (440)
T 3zyj_A          202 --NLTPLIKLDELDLSGNHLSAIRPGS-FQ------------------------------------------GLMHLQKL  236 (440)
T ss_dssp             --CCTTCSSCCEEECTTSCCCEECTTT-TT------------------------------------------TCTTCCEE
T ss_pred             --ccCCCcccCEEECCCCccCccChhh-hc------------------------------------------cCccCCEE
Confidence              2356677777777777776433322 11                                          15567777


Q ss_pred             eccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCccc
Q 044176          282 DLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLH  337 (362)
Q Consensus       282 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~  337 (362)
                      ++++|.+++..+..+..+++|+.|+|++|+++...+..+..+++|+.|++++|++.
T Consensus       237 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          237 WMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             ECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             ECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            77777777666777777777888888888777666666777778888888877754

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.94  E-value=2.9e-25  Score=209.35  Aligned_cols=256  Identities=22%  Similarity=0.263  Sum_probs=203.9

Q ss_pred             CCCcEEEccCCcCCCCCCCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEccc
Q 044176           40 KNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNN  119 (362)
Q Consensus        40 ~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~  119 (362)
                      .+++.|++++|.++.......++|+.|++++|.++. +|.   .+++|++|++++|+++ .+|.   .+ ++|++|++++
T Consensus        40 ~~l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~---~l-~~L~~L~Ls~  110 (622)
T 3g06_A           40 NGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV---LP-PGLLELSIFS  110 (622)
T ss_dssp             HCCCEEECCSSCCSCCCSCCCTTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCS-CCCC---CC-TTCCEEEECS
T ss_pred             CCCcEEEecCCCcCccChhhCCCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCC-cCCC---CC-CCCCEEECcC
Confidence            368999999999986554446899999999999984 554   5799999999999998 7777   33 7899999999


Q ss_pred             ccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCcc
Q 044176          120 NYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPL  199 (362)
Q Consensus       120 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  199 (362)
                      |.+. .+|.    ..++|++|++++|.++. +|..   +++|+.|++++|.+++. +.   .+++|+.|++++|.++...
T Consensus       111 N~l~-~l~~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~l~  177 (622)
T 3g06_A          111 NPLT-HLPA----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTSLP  177 (622)
T ss_dssp             CCCC-CCCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSCCC
T ss_pred             CcCC-CCCC----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCCCc
Confidence            9998 4555    34789999999999984 4443   48999999999998653 32   4578999999999988633


Q ss_pred             ccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhccccc
Q 044176          200 CEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFT  279 (362)
Q Consensus       200 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  279 (362)
                            ..+++|+.|++++|.+.+ ++.    ..++++.+++.++....+..                      .+++|+
T Consensus       178 ------~~~~~L~~L~Ls~N~l~~-l~~----~~~~L~~L~L~~N~l~~l~~----------------------~~~~L~  224 (622)
T 3g06_A          178 ------MLPSGLQELSVSDNQLAS-LPT----LPSELYKLWAYNNRLTSLPA----------------------LPSGLK  224 (622)
T ss_dssp             ------CCCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSSCCC----------------------CCTTCC
T ss_pred             ------ccCCCCcEEECCCCCCCC-CCC----ccchhhEEECcCCcccccCC----------------------CCCCCC
Confidence                  346899999999999985 332    24677888877765332221                      147899


Q ss_pred             EEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhccCCCccc
Q 044176          280 TIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFARPDLY  359 (362)
Q Consensus       280 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~~~~l~  359 (362)
                      .|++++|++++ +|   ..+++|+.|++++|.++ .+|.   .+++|+.|++++|+++ .+|..+..+++|+.|   +++
T Consensus       225 ~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L---~L~  292 (622)
T 3g06_A          225 ELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTV---NLE  292 (622)
T ss_dssp             EEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEE---ECC
T ss_pred             EEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEE---Eec
Confidence            99999999985 44   46689999999999999 4555   6789999999999999 678888888877777   777


Q ss_pred             cCC
Q 044176          360 TNA  362 (362)
Q Consensus       360 ~n~  362 (362)
                      +|+
T Consensus       293 ~N~  295 (622)
T 3g06_A          293 GNP  295 (622)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            764

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=1.7e-26  Score=199.17  Aligned_cols=215  Identities=20%  Similarity=0.247  Sum_probs=155.3

Q ss_pred             CCCcccccCCccccccCCCCcEEEcCCCccccccc---CCcCCCcEEEccCCcCCCC---CCCCCCCccEEEccCcc-cc
Q 044176            2 SNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGT---ILVPPPSTRAFLFSNNK-LF   74 (362)
Q Consensus         2 ~~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~---~~~~~L~~L~l~~n~~~~~---~~~~~~~L~~L~l~~~~-~~   74 (362)
                      +++.++ .+|....   ++++.|++++|.++.+++   ..+++|+.|++++|.+++.   .+..+++|++|++++|. +.
T Consensus        19 ~~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~   94 (285)
T 1ozn_A           19 PQQGLQ-AVPVGIP---AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR   94 (285)
T ss_dssp             CSSCCS-SCCTTCC---TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC
T ss_pred             CcCCcc-cCCcCCC---CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcc
Confidence            456777 7787543   789999999999999886   4567889999988887754   34457788888888886 66


Q ss_pred             cCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchh
Q 044176           75 GQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRY  154 (362)
Q Consensus        75 ~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  154 (362)
                      ...+..|..+++|++|++++|.+++..+..+..+ ++|++|++++|.+....+..+.. +++|++|++++|.+++..+..
T Consensus        95 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~  172 (285)
T 1ozn_A           95 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGL-AALQYLYLQDNALQALPDDTFRD-LGNLTHLFLHGNRISSVPERA  172 (285)
T ss_dssp             CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCCEECTTT
T ss_pred             ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCC-cCCCEEECCCCcccccCHhHhcc-CCCccEEECCCCcccccCHHH
Confidence            6667778888888888888888874334455555 67888888888777433333443 477888888888777555556


Q ss_pred             hhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCC
Q 044176          155 LADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGF  224 (362)
Q Consensus       155 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  224 (362)
                      +..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..  +..+++|+.|++++|.+...
T Consensus       173 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~N~~~c~  240 (285)
T 1ozn_A          173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA--LAPLRALQYLRLNDNPWVCD  240 (285)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHH--HTTCTTCCEEECCSSCEECS
T ss_pred             hcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHH--cccCcccCEEeccCCCccCC
Confidence            777788888888888777666777777778888888877776643332  35677777777777776643

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=3.8e-26  Score=209.71  Aligned_cols=246  Identities=19%  Similarity=0.215  Sum_probs=191.0

Q ss_pred             ccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEec
Q 044176           63 TRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGL  142 (362)
Q Consensus        63 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  142 (362)
                      .+.++.++..+. .+|..+  .+++++|++++|.+++..+..+..+ ++|++|++++|.+....+..+.. +++|++|++
T Consensus        56 ~~~v~c~~~~l~-~iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~L  130 (452)
T 3zyi_A           56 FSKVVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHL-HHLEVLQLGRNSIRQIEVGAFNG-LASLNTLEL  130 (452)
T ss_dssp             SCEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECTTTTTTC-TTCCEEECCSSCCCEECTTTTTT-CTTCCEEEC
T ss_pred             CcEEEECCCCcC-ccCCCC--CCCccEEECcCCcCceECHHHcCCC-CCCCEEECCCCccCCcChhhccC-cccCCEEEC
Confidence            457777777776 455544  3688888888888885445666666 68888888888887555555554 478888888


Q ss_pred             cCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCccc
Q 044176          143 NSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFT  222 (362)
Q Consensus       143 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  222 (362)
                      ++|.++...+..+..+++|+.|++++|.+....+..+..+++|++|++++|...+..+. ..+..+++|++|++++|.+.
T Consensus       131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~-~~~~~l~~L~~L~L~~n~l~  209 (452)
T 3zyi_A          131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE-GAFEGLFNLKYLNLGMCNIK  209 (452)
T ss_dssp             CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT-TTTTTCTTCCEEECTTSCCS
T ss_pred             CCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccCh-hhccCCCCCCEEECCCCccc
Confidence            88888866666788888888888888888766666788888888888888544432222 23467788888888888876


Q ss_pred             CCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCC
Q 044176          223 GFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSL  302 (362)
Q Consensus       223 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L  302 (362)
                      +. +.  +                                          ..+++|+.|++++|.+++..+..+..+++|
T Consensus       210 ~~-~~--~------------------------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  244 (452)
T 3zyi_A          210 DM-PN--L------------------------------------------TPLVGLEELEMSGNHFPEIRPGSFHGLSSL  244 (452)
T ss_dssp             SC-CC--C------------------------------------------TTCTTCCEEECTTSCCSEECGGGGTTCTTC
T ss_pred             cc-cc--c------------------------------------------cccccccEEECcCCcCcccCcccccCccCC
Confidence            32 21  0                                          116789999999999998889999999999


Q ss_pred             cEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhccCCCccccCC
Q 044176          303 IVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFARPDLYTNA  362 (362)
Q Consensus       303 ~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~~~~l~~n~  362 (362)
                      +.|++++|++++..+..|..+++|++|++++|++++..++.|..+++|+.|   ++++|.
T Consensus       245 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L---~L~~Np  301 (452)
T 3zyi_A          245 KKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVEL---HLHHNP  301 (452)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEE---ECCSSC
T ss_pred             CEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEE---EccCCC
Confidence            999999999998888999999999999999999997777778888777777   777763

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=3.9e-26  Score=208.90  Aligned_cols=247  Identities=19%  Similarity=0.221  Sum_probs=193.8

Q ss_pred             CccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEe
Q 044176           62 STRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLG  141 (362)
Q Consensus        62 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  141 (362)
                      ..+.++.++..+. .+|..+.  ++++.|++++|+++...+..+..+ ++|++|++++|.+....+..+.. +++|++|+
T Consensus        44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l-~~L~~L~Ls~n~i~~i~~~~~~~-l~~L~~L~  118 (440)
T 3zyj_A           44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHL-RHLEILQLSRNHIRTIEIGAFNG-LANLNTLE  118 (440)
T ss_dssp             TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSC-SSCCEEECCSSCCCEECGGGGTT-CSSCCEEE
T ss_pred             CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCC-CCCCEEECCCCcCCccChhhccC-CccCCEEE
Confidence            3467788887777 4565553  688899999998884444566665 78999999999887554555554 48899999


Q ss_pred             ccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcc
Q 044176          142 LNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEF  221 (362)
Q Consensus       142 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~  221 (362)
                      +++|.++...+..+..+++|+.|++++|.+....+..+..+++|++|++++|...+..+. ..+..+++|++|++++|.+
T Consensus       119 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~-~~~~~l~~L~~L~L~~n~l  197 (440)
T 3zyj_A          119 LFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE-GAFEGLSNLRYLNLAMCNL  197 (440)
T ss_dssp             CCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT-TTTTTCSSCCEEECTTSCC
T ss_pred             CCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCc-chhhcccccCeecCCCCcC
Confidence            999988866666788889999999999988766666788888999999988654433222 2347788889999988887


Q ss_pred             cCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCC
Q 044176          222 TGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKS  301 (362)
Q Consensus       222 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~  301 (362)
                      .. ++.  +                                          ..+++|+.|++++|++++..+..+..+++
T Consensus       198 ~~-~~~--~------------------------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  232 (440)
T 3zyj_A          198 RE-IPN--L------------------------------------------TPLIKLDELDLSGNHLSAIRPGSFQGLMH  232 (440)
T ss_dssp             SS-CCC--C------------------------------------------TTCSSCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             cc-ccc--c------------------------------------------CCCcccCEEECCCCccCccChhhhccCcc
Confidence            62 221  0                                          11678999999999999888899999999


Q ss_pred             CcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhccCCCccccCC
Q 044176          302 LIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFARPDLYTNA  362 (362)
Q Consensus       302 L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~~~~l~~n~  362 (362)
                      |+.|++++|++++..+..|..+++|++|++++|+++...++.|..+++|+.|   ++++|.
T Consensus       233 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L---~L~~Np  290 (440)
T 3zyj_A          233 LQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERI---HLHHNP  290 (440)
T ss_dssp             CCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEE---ECCSSC
T ss_pred             CCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEE---EcCCCC
Confidence            9999999999998888899999999999999999997777778888777777   677763

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=2e-27  Score=207.47  Aligned_cols=249  Identities=22%  Similarity=0.228  Sum_probs=171.0

Q ss_pred             cCCCcEEEccCCcCCCCCCCC-CCCccEEEccCcccc-cCCccccc-------CCCCCCEEEcccCcccccCCCCc--cc
Q 044176           39 WKNITVLNLQNNTIQGTILVP-PPSTRAFLFSNNKLF-GQIPPSIY-------SLSSLEYISLSHNNLSGTIPPCL--GN  107 (362)
Q Consensus        39 ~~~L~~L~l~~n~~~~~~~~~-~~~L~~L~l~~~~~~-~~~~~~~~-------~l~~L~~L~L~~~~~~~~~~~~l--~~  107 (362)
                      .++|+.+++++|.+  ..+.. ...|++|++++|.+. ..++..+.       ++++|++|++++|.+++.+|..+  ..
T Consensus        42 ~~~L~~l~l~~n~l--~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  119 (312)
T 1wwl_A           42 GRSLEYLLKRVDTE--ADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT  119 (312)
T ss_dssp             EEECTTHHHHCCTT--CCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred             CCCceeEeeccccc--ccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence            45788888888887  22222 333788888888873 34555554       68888888888888887777765  44


Q ss_pred             ccccccEEEcccccccCcchhhhhcC----CCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCC--cchhc--
Q 044176          108 FSTQLTILHLNNNYLQGRIPDAFANG----SCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDT--FPSWL--  179 (362)
Q Consensus       108 ~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~--  179 (362)
                      + ++|++|++++|.+.+. |..+...    .++|++|++++|.+++..+..++.+++|+.|++++|++.+.  .+..+  
T Consensus       120 l-~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  197 (312)
T 1wwl_A          120 G-PDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP  197 (312)
T ss_dssp             S-CCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred             C-CCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence            4 6888888888888754 6555442    26788888888888766667788888888888888876543  22333  


Q ss_pred             cCCCCCCeEEccCCcCCCccccc-cccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCcccccc
Q 044176          180 GSLPGLKILVLRSNRFYGPLCEV-NIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQD  258 (362)
Q Consensus       180 ~~~~~L~~L~l~~n~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~  258 (362)
                      ..+++|++|++++|.+.+..... ..+..+++|++|++++|.+.+..+...+.                           
T Consensus       198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~---------------------------  250 (312)
T 1wwl_A          198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD---------------------------  250 (312)
T ss_dssp             TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC---------------------------
T ss_pred             ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhh---------------------------
Confidence            67788888888888776422111 12245677888888888777544211110                           


Q ss_pred             ceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccc
Q 044176          259 SVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHG  338 (362)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~  338 (362)
                                     .+++|+.|++++|.++ .+|..+.  ++|+.|++++|++++. |. +..+++|++|++++|++++
T Consensus       251 ---------------~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          251 ---------------WPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             ---------------CCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             ---------------hcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence                           1466888888888887 5555554  7888888888888854 55 7888888888888888875

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=9.6e-27  Score=203.62  Aligned_cols=254  Identities=20%  Similarity=0.221  Sum_probs=192.9

Q ss_pred             CcEEEccCCcCCC---CCCCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcc
Q 044176           42 ITVLNLQNNTIQG---TILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLN  118 (362)
Q Consensus        42 L~~L~l~~n~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~  118 (362)
                      ++..+++.+.+..   ..+..+++|++|++++|.+....|..|.++++|++|++++|.+++ .+. +..+ ++|++|+++
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~-~~~l-~~L~~L~Ls   88 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-TLD-LESL-STLRTLDLN   88 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEE-EEE-ETTC-TTCCEEECC
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCc-chh-hhhc-CCCCEEECc
Confidence            3444555544432   223346789999999999998877889999999999999999984 333 5555 689999999


Q ss_pred             cccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCc
Q 044176          119 NNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGP  198 (362)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  198 (362)
                      +|.+. .++.    . ++|++|++++|.+++..+.   .+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+.
T Consensus        89 ~n~l~-~l~~----~-~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  159 (317)
T 3o53_A           89 NNYVQ-ELLV----G-PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV  159 (317)
T ss_dssp             SSEEE-EEEE----C-TTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred             CCccc-cccC----C-CCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence            99887 3332    2 7899999999988754333   367789999999988777677788888899999998888764


Q ss_pred             cccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccc
Q 044176          199 LCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIF  278 (362)
Q Consensus       199 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  278 (362)
                      .+... ...+++|++|++++|.+.+.....                                             .+++|
T Consensus       160 ~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~---------------------------------------------~l~~L  193 (317)
T 3o53_A          160 NFAEL-AASSDTLEHLNLQYNFIYDVKGQV---------------------------------------------VFAKL  193 (317)
T ss_dssp             EGGGG-GGGTTTCCEEECTTSCCCEEECCC---------------------------------------------CCTTC
T ss_pred             cHHHH-hhccCcCCEEECCCCcCccccccc---------------------------------------------ccccC
Confidence            44332 135688899999888876321110                                             15779


Q ss_pred             cEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCccc-ccCchhhhhhHhhhccCC
Q 044176          279 TTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLH-GRIPEQFVDAEICSSFAR  355 (362)
Q Consensus       279 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~l~~  355 (362)
                      +.|++++|++++ ++..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|+++ +.+|..+..++.|+.+++
T Consensus       194 ~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l  269 (317)
T 3o53_A          194 KTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK  269 (317)
T ss_dssp             CEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHH
T ss_pred             CEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEEC
Confidence            999999999985 4445888999999999999998 57888999999999999999998 677788888888877643

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=2.5e-27  Score=206.90  Aligned_cols=249  Identities=22%  Similarity=0.224  Sum_probs=180.3

Q ss_pred             CCCccEEEccCcccccCCcccccCCCCCCEEEcccCccc-ccCCCCcc-------cccccccEEEcccccccCcchhhhh
Q 044176           60 PPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLS-GTIPPCLG-------NFSTQLTILHLNNNYLQGRIPDAFA  131 (362)
Q Consensus        60 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~-~~~~~~l~-------~~~~~L~~L~l~~~~~~~~~~~~~~  131 (362)
                      .++|+.+++++|.+  .+|..+...  |++|++++|.+. ..+|..+.       .+ ++|++|++++|.+.+..|..++
T Consensus        42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~  116 (312)
T 1wwl_A           42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGI-SGLQELTLENLEVTGTAPPPLL  116 (312)
T ss_dssp             EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTT-SCCCEEEEEEEBCBSCCCCCSS
T ss_pred             CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCc-CCccEEEccCCcccchhHHHHH
Confidence            45678888888888  566655544  888888888884 23554443       34 6889999999988877777652


Q ss_pred             -cCCCCccEEeccCCcccCCCchhhhcC-----CCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCcc--cccc
Q 044176          132 -NGSCDLRSLGLNSNKLRGSFPRYLADC-----TGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPL--CEVN  203 (362)
Q Consensus       132 -~~~~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~  203 (362)
                       ..+++|++|++++|.+++. |..+..+     ++|+.|++++|.+.+..+..++.+++|++|++++|.+.+..  +...
T Consensus       117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  195 (312)
T 1wwl_A          117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL  195 (312)
T ss_dssp             SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred             HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence             4457899999999988865 7777766     88999999999887777788888889999999988876532  2223


Q ss_pred             ccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEec
Q 044176          204 IMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDL  283 (362)
Q Consensus       204 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l  283 (362)
                      .+..+++|++|++++|.+.+. +....                                       .....+++|+.|++
T Consensus       196 ~~~~l~~L~~L~L~~N~l~~~-~~~~~---------------------------------------~~~~~l~~L~~L~L  235 (312)
T 1wwl_A          196 CPLKFPTLQVLALRNAGMETP-SGVCS---------------------------------------ALAAARVQLQGLDL  235 (312)
T ss_dssp             CTTSCTTCCEEECTTSCCCCH-HHHHH---------------------------------------HHHHTTCCCSEEEC
T ss_pred             HhccCCCCCEEECCCCcCcch-HHHHH---------------------------------------HHHhcCCCCCEEEC
Confidence            346788899999998887631 11100                                       00111567888999


Q ss_pred             cCcccCCCcc-hhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhccCCCccccCC
Q 044176          284 SSNQFQGEIP-QVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFARPDLYTNA  362 (362)
Q Consensus       284 ~~n~~~~~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~~~~l~~n~  362 (362)
                      ++|.+++..| ..+..+++|+.|++++|+++ .+|..+.  ++|++|++++|++++. |. +..+++|++|   ++++|+
T Consensus       236 s~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L---~L~~N~  307 (312)
T 1wwl_A          236 SHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNL---SLKGNP  307 (312)
T ss_dssp             TTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEE---ECTTCT
T ss_pred             CCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEE---eccCCC
Confidence            9998887654 44566788999999999888 6666665  7889999999998864 65 7777777666   666664

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=9.2e-27  Score=203.75  Aligned_cols=262  Identities=22%  Similarity=0.211  Sum_probs=202.7

Q ss_pred             CCcEEEcCCCccccccc---CCcCCCcEEEccCCcCCCCC---CCCCCCccEEEccCcccccCCcccccCCCCCCEEEcc
Q 044176           20 SLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGTI---LVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLS   93 (362)
Q Consensus        20 ~L~~L~ls~~~i~~~~~---~~~~~L~~L~l~~n~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~   93 (362)
                      +++..+++.+.+.....   ..+++|++|++++|.+.+..   +..+++|++|++++|.+.+..+  +..+++|++|+++
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls   88 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN   88 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred             ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence            34555666666655444   34567888888888877644   3457888888888888875543  8889999999999


Q ss_pred             cCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCC
Q 044176           94 HNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGD  173 (362)
Q Consensus        94 ~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  173 (362)
                      +|.++ .++    .. ++|++|++++|.+.+..+..    +++|++|++++|.+++..+..+..+++|+.|++++|.+.+
T Consensus        89 ~n~l~-~l~----~~-~~L~~L~l~~n~l~~~~~~~----~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  158 (317)
T 3o53_A           89 NNYVQ-ELL----VG-PSIETLHAANNNISRVSCSR----GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT  158 (317)
T ss_dssp             SSEEE-EEE----EC-TTCCEEECCSSCCSEEEECC----CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCE
T ss_pred             CCccc-ccc----CC-CCcCEEECCCCccCCcCccc----cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCc
Confidence            99998 443    22 68999999999987443332    3789999999999997767788899999999999999987


Q ss_pred             Ccchhc-cCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCC
Q 044176          174 TFPSWL-GSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGE  252 (362)
Q Consensus       174 ~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~  252 (362)
                      ..+..+ ..+++|++|++++|.+++...    ...+++|++|++++|.+.+..+ . +.                     
T Consensus       159 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~l~~L~~L~Ls~N~l~~l~~-~-~~---------------------  211 (317)
T 3o53_A          159 VNFAELAASSDTLEHLNLQYNFIYDVKG----QVVFAKLKTLDLSSNKLAFMGP-E-FQ---------------------  211 (317)
T ss_dssp             EEGGGGGGGTTTCCEEECTTSCCCEEEC----CCCCTTCCEEECCSSCCCEECG-G-GG---------------------
T ss_pred             ccHHHHhhccCcCCEEECCCCcCccccc----ccccccCCEEECCCCcCCcchh-h-hc---------------------
Confidence            766665 478999999999999876422    2347899999999999884322 2 11                     


Q ss_pred             ccccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCc-cCchhhhhcCCCcCEEEc
Q 044176          253 EDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLT-GSIPVSFANMIVLESLDL  331 (362)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l  331 (362)
                                           .+++|+.|++++|.++ .+|..+..+++|+.|++++|.+. +..+..+..++.|+.+++
T Consensus       212 ---------------------~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l  269 (317)
T 3o53_A          212 ---------------------SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK  269 (317)
T ss_dssp             ---------------------GGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHH
T ss_pred             ---------------------ccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEEC
Confidence                                 1678999999999998 56777889999999999999998 778888999999999999


Q ss_pred             cCC-cccccCch
Q 044176          332 SSN-KLHGRIPE  342 (362)
Q Consensus       332 ~~n-~~~~~~~~  342 (362)
                      +++ .+++..|.
T Consensus       270 ~~~~~l~~~~~~  281 (317)
T 3o53_A          270 QTVKKLTGQNEE  281 (317)
T ss_dssp             HHHHHHHSSSSC
T ss_pred             CCchhccCCchh
Confidence            954 45554443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=5.1e-26  Score=210.12  Aligned_cols=232  Identities=22%  Similarity=0.226  Sum_probs=121.6

Q ss_pred             CccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEe
Q 044176           62 STRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLG  141 (362)
Q Consensus        62 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  141 (362)
                      +|++|++++|.+.+..|..|..+++|++|++++|.+++..|  +..+ ++|++|++++|.+. .+|..     ++|++|+
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l-~~L~~L~Ls~N~l~-~l~~~-----~~L~~L~  105 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESL-STLRTLDLNNNYVQ-ELLVG-----PSIETLH  105 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTC-TTCCEEECCSSEEE-EEEEC-----TTCCEEE
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccC-CCCCEEEecCCcCC-CCCCC-----CCcCEEE
Confidence            44555555555554444555555555555555555552222  3333 45555555555554 22211     4555555


Q ss_pred             ccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcc
Q 044176          142 LNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEF  221 (362)
Q Consensus       142 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~  221 (362)
                      +++|.+++..+.   .++.|+.|++++|.+++..+..++.+++|++|++++|.+.+..+..+ ...+++|+.|++++|.+
T Consensus       106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l-~~~l~~L~~L~Ls~N~l  181 (487)
T 3oja_A          106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL-AASSDTLEHLNLQYNFI  181 (487)
T ss_dssp             CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGG-GGGTTTCCEEECTTSCC
T ss_pred             CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHH-hhhCCcccEEecCCCcc
Confidence            555555533222   23455555555555555445455555555555555555554333221 12345566666665555


Q ss_pred             cCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCC
Q 044176          222 TGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKS  301 (362)
Q Consensus       222 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~  301 (362)
                      .+..+..                                             .+++|+.|++++|.+++..+ .+..+++
T Consensus       182 ~~~~~~~---------------------------------------------~l~~L~~L~Ls~N~l~~~~~-~~~~l~~  215 (487)
T 3oja_A          182 YDVKGQV---------------------------------------------VFAKLKTLDLSSNKLAFMGP-EFQSAAG  215 (487)
T ss_dssp             CEEECCC---------------------------------------------CCTTCCEEECCSSCCCEECG-GGGGGTT
T ss_pred             ccccccc---------------------------------------------cCCCCCEEECCCCCCCCCCH-hHcCCCC
Confidence            4221100                                             04556666666666664333 3566666


Q ss_pred             CcEEEccCCcCccCchhhhhcCCCcCEEEccCCccc-ccCchhhhhhHhhhcc
Q 044176          302 LIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLH-GRIPEQFVDAEICSSF  353 (362)
Q Consensus       302 L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~l  353 (362)
                      |+.|++++|.+++ +|..+..+++|+.|++++|+++ +.+|..+..++.++.+
T Consensus       216 L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l  267 (487)
T 3oja_A          216 VTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV  267 (487)
T ss_dssp             CSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHH
T ss_pred             ccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEE
Confidence            6666666666663 5555666666666666666666 4455555555555544

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=1.6e-24  Score=200.07  Aligned_cols=233  Identities=22%  Similarity=0.211  Sum_probs=181.7

Q ss_pred             cCCCcEEEccCCcCCCCC---CCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEE
Q 044176           39 WKNITVLNLQNNTIQGTI---LVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTIL  115 (362)
Q Consensus        39 ~~~L~~L~l~~n~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L  115 (362)
                      +++|+.|++++|.+.+..   +..+++|++|++++|.+.+..|  +..+++|++|++++|.++ .++.    . ++|++|
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~~----~-~~L~~L  104 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLV----G-PSIETL  104 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEEE----C-TTCCEE
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCCC----C-CCcCEE
Confidence            446777777777776543   3447788888888888875544  888999999999999887 4432    2 689999


Q ss_pred             EcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhcc-CCCCCCeEEccCCc
Q 044176          116 HLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLG-SLPGLKILVLRSNR  194 (362)
Q Consensus       116 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n~  194 (362)
                      ++++|.+.+..+.    .+++|++|++++|.+++..+..++.+++|+.|++++|.+++..+..+. .+++|++|++++|.
T Consensus       105 ~L~~N~l~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~  180 (487)
T 3oja_A          105 HAANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF  180 (487)
T ss_dssp             ECCSSCCCCEEEC----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred             ECcCCcCCCCCcc----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence            9999998754333    237899999999999877777888899999999999999877777765 78999999999998


Q ss_pred             CCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhh
Q 044176          195 FYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRI  274 (362)
Q Consensus       195 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (362)
                      +.+...    ...+++|+.|++++|.+.+..+.  +.                                          .
T Consensus       181 l~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~--~~------------------------------------------~  212 (487)
T 3oja_A          181 IYDVKG----QVVFAKLKTLDLSSNKLAFMGPE--FQ------------------------------------------S  212 (487)
T ss_dssp             CCEEEC----CCCCTTCCEEECCSSCCCEECGG--GG------------------------------------------G
T ss_pred             cccccc----cccCCCCCEEECCCCCCCCCCHh--Hc------------------------------------------C
Confidence            876422    23578999999999998853332  11                                          1


Q ss_pred             cccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCc-cCchhhhhcCCCcCEEEcc
Q 044176          275 ITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLT-GSIPVSFANMIVLESLDLS  332 (362)
Q Consensus       275 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~  332 (362)
                      +++|+.|++++|.+++ +|..+..+++|+.|++++|.+. +..|..+..++.|+.++++
T Consensus       213 l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          213 AAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             GTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            6778999999999984 6777888899999999999987 6677788888888888885

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=7.7e-23  Score=175.32  Aligned_cols=211  Identities=21%  Similarity=0.182  Sum_probs=115.9

Q ss_pred             CCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEE
Q 044176           86 SLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVN  165 (362)
Q Consensus        86 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  165 (362)
                      ++++|++++|.+++..+..+..+ ++|++|++++|.+....+..+.. +++|++|++++|.+++..+..+..+++|+.|+
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSF-PELQVLDLSRCEIQTIEDGAYQS-LSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTC-TTCSEEECTTCCCCEECTTTTTT-CTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             CccEEECCCCcccccCHhHhccc-cCCcEEECCCCcCCccCHHHccC-CcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence            34444444444442112233333 34455555444444222223322 24555555555555544444555556666666


Q ss_pred             ccCCCCCCCcchhccCCCCCCeEEccCCcCCCcc-ccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCC
Q 044176          166 VGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPL-CEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGS  244 (362)
Q Consensus       166 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~  244 (362)
                      +++|.+.+..+..++.+++|++|++++|.+.+.. +..  +..+++|++|++++|.+.+..+.. +..+..+        
T Consensus       107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~--~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L--------  175 (276)
T 2z62_A          107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY--FSNLTNLEHLDLSSNKIQSIYCTD-LRVLHQM--------  175 (276)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG--GGGCTTCCEEECCSSCCCEECGGG-GHHHHTC--------
T ss_pred             CCCCCccccCchhcccCCCCCEEECcCCccceecCchh--hccCCCCCEEECCCCCCCcCCHHH-hhhhhhc--------
Confidence            6666554444444556666666666666655421 222  355666777777777666332222 2222221        


Q ss_pred             CcccccCCccccccceeeeecCcchHhhhhccccc-EEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcC
Q 044176          245 DGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFT-TIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANM  323 (362)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~  323 (362)
                                                     +.+. .|++++|.+++..+..+. ..+|+.|++++|++++..+..+..+
T Consensus       176 -------------------------------~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l  223 (276)
T 2z62_A          176 -------------------------------PLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRL  223 (276)
T ss_dssp             -------------------------------TTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTC
T ss_pred             -------------------------------cccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhccc
Confidence                                           1222 678888888755444443 3478888888888886655667888


Q ss_pred             CCcCEEEccCCcccccCc
Q 044176          324 IVLESLDLSSNKLHGRIP  341 (362)
Q Consensus       324 ~~L~~L~l~~n~~~~~~~  341 (362)
                      ++|++|++++|+++...+
T Consensus       224 ~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          224 TSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             CSCCEEECCSSCBCCCTT
T ss_pred             ccccEEEccCCcccccCC
Confidence            888888888888886554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=2.1e-22  Score=172.02  Aligned_cols=202  Identities=23%  Similarity=0.239  Sum_probs=115.8

Q ss_pred             CCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEc
Q 044176           87 LEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNV  166 (362)
Q Consensus        87 L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  166 (362)
                      .++++++++.++ .+|..+.   +++++|++++|.+....+..+.. +++|++|++++|.++...+..|..+++|+.|++
T Consensus        18 ~~~l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           18 KNSVDCSSKKLT-AIPSNIP---ADTKKLDLQSNKLSSLPSKAFHR-LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCSCCCTTSSSS-CTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred             CCEEEccCCCCC-ccCCCCC---CCCCEEECcCCCCCeeCHHHhcC-CCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence            455556555555 4554332   34556666666555322223333 356666666666655443444555666666666


Q ss_pred             cCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCc
Q 044176          167 GNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDG  246 (362)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~  246 (362)
                      ++|.+.+..+..+..+++|++|++++|.+.+..+..  +..+++|++|++++|.+.+..+.. +.               
T Consensus        93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~-~~---------------  154 (270)
T 2o6q_A           93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRV--FDSLTKLTYLSLGYNELQSLPKGV-FD---------------  154 (270)
T ss_dssp             CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTT--TTTCTTCCEEECCSSCCCCCCTTT-TT---------------
T ss_pred             CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHH--hCcCcCCCEEECCCCcCCccCHhH-cc---------------
Confidence            666665544455556666666666666655533332  245566666666666665322211 11               


Q ss_pred             ccccCCccccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCc
Q 044176          247 LYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVL  326 (362)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L  326 (362)
                                                 .+++|+.|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|
T Consensus       155 ---------------------------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  207 (270)
T 2o6q_A          155 ---------------------------KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL  207 (270)
T ss_dssp             ---------------------------TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             ---------------------------CCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCC
Confidence                                       14556677777777765555556667777777777777775555556777777


Q ss_pred             CEEEccCCcccc
Q 044176          327 ESLDLSSNKLHG  338 (362)
Q Consensus       327 ~~L~l~~n~~~~  338 (362)
                      +.|++++|++.-
T Consensus       208 ~~L~l~~N~~~c  219 (270)
T 2o6q_A          208 KMLQLQENPWDC  219 (270)
T ss_dssp             CEEECCSSCBCC
T ss_pred             CEEEecCCCeeC
Confidence            777777777654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.90  E-value=6.1e-24  Score=189.33  Aligned_cols=244  Identities=18%  Similarity=0.206  Sum_probs=141.2

Q ss_pred             CccEEEccCcccccCCc----ccccCCC-CCCEEEcccCcccccCCCCcccc----cccccEEEcccccccCcchhhhhc
Q 044176           62 STRAFLFSNNKLFGQIP----PSIYSLS-SLEYISLSHNNLSGTIPPCLGNF----STQLTILHLNNNYLQGRIPDAFAN  132 (362)
Q Consensus        62 ~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~L~~~~~~~~~~~~l~~~----~~~L~~L~l~~~~~~~~~~~~~~~  132 (362)
                      +|++|++++|.+.+..+    ..+.+++ +|++|++++|.+++..+..+...    .++|++|++++|.+.+..+..+..
T Consensus        23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~  102 (362)
T 3goz_A           23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK  102 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred             CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence            35555555555554444    5555666 67777777776664333333332    146677777777666444443332


Q ss_pred             C---C-CCccEEeccCCcccCCCchhhhc-----CCCCcEEEccCCCCCCCcc----hhccCCC-CCCeEEccCCcCCCc
Q 044176          133 G---S-CDLRSLGLNSNKLRGSFPRYLAD-----CTGLEVVNVGNNMIGDTFP----SWLGSLP-GLKILVLRSNRFYGP  198 (362)
Q Consensus       133 ~---~-~~L~~L~l~~~~~~~~~~~~~~~-----l~~L~~L~l~~~~~~~~~~----~~~~~~~-~L~~L~l~~n~~~~~  198 (362)
                      .   . ++|++|++++|.+++..+..+..     .+.|+.|++++|.+++..+    ..+..++ +|++|++++|.+++.
T Consensus       103 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~  182 (362)
T 3goz_A          103 TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASK  182 (362)
T ss_dssp             HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred             HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchh
Confidence            2   1 46777777777766554444332     2477777777777654322    3334444 777777777776654


Q ss_pred             ccccc--ccccC-CcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhc
Q 044176          199 LCEVN--IMLPF-EALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRII  275 (362)
Q Consensus       199 ~~~~~--~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (362)
                      .+..+  .+..+ ++|++|++++|.+.+.....+...+.                                      ...
T Consensus       183 ~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~--------------------------------------~~~  224 (362)
T 3goz_A          183 NCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFS--------------------------------------SIP  224 (362)
T ss_dssp             CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH--------------------------------------HSC
T ss_pred             hHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHh--------------------------------------cCC
Confidence            33222  22344 47777777777776432222211111                                      113


Q ss_pred             ccccEEeccCcccCCCcc----hhhcCCCCCcEEEccCCcCccC-------chhhhhcCCCcCEEEccCCcccccCchh
Q 044176          276 TIFTTIDLSSNQFQGEIP----QVLGDFKSLIVLNLSHNGLTGS-------IPVSFANMIVLESLDLSSNKLHGRIPEQ  343 (362)
Q Consensus       276 ~~L~~L~l~~n~~~~~~~----~~~~~~~~L~~L~l~~n~i~~~-------~~~~~~~~~~L~~L~l~~n~~~~~~~~~  343 (362)
                      ++|+.|++++|.+++..+    ..+..+++|+.|++++|.+.+.       ++..+..++.|+.||+++|++.+..+..
T Consensus       225 ~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~  303 (362)
T 3goz_A          225 NHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIP  303 (362)
T ss_dssp             TTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHH
T ss_pred             CCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHH
Confidence            468888888888876544    2345667888888888874432       2335567778888888888887664433

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=4e-22  Score=170.20  Aligned_cols=203  Identities=22%  Similarity=0.229  Sum_probs=170.1

Q ss_pred             CCCcEEEcCCCcccccccCCcCCCcEEEccCCcCCCCC---CCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccC
Q 044176           19 KSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTI---LVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHN   95 (362)
Q Consensus        19 ~~L~~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~   95 (362)
                      .+.+.++++++.++.+|....++++.|++++|.+.+..   +..+++|++|++++|.+....+..|.++++|++|++++|
T Consensus        16 ~~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n   95 (270)
T 2o6q_A           16 NNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN   95 (270)
T ss_dssp             TTTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred             CCCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence            56889999999999998876788999999999988654   455899999999999999777777889999999999999


Q ss_pred             cccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCc
Q 044176           96 NLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTF  175 (362)
Q Consensus        96 ~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  175 (362)
                      .++ .++...+...++|++|++++|.+....+..+.. +++|++|++++|.+++..+..+..+++|+.|++++|.+.+..
T Consensus        96 ~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  173 (270)
T 2o6q_A           96 KLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS-LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP  173 (270)
T ss_dssp             CCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             cCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCc-CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence            998 666554333379999999999998554555554 489999999999999766667899999999999999998877


Q ss_pred             chhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCC
Q 044176          176 PSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFL  225 (362)
Q Consensus       176 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  225 (362)
                      +..+..+++|++|++++|.+.+..+..  +..+++|+.|++++|.+....
T Consensus       174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~l~~N~~~c~c  221 (270)
T 2o6q_A          174 EGAFDKLTELKTLKLDNNQLKRVPEGA--FDSLEKLKMLQLQENPWDCTC  221 (270)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCTTT--TTTCTTCCEEECCSSCBCCSS
T ss_pred             hhHhccCCCcCEEECCCCcCCcCCHHH--hccccCCCEEEecCCCeeCCC
Confidence            777889999999999999988654443  477899999999999986443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.90  E-value=2.4e-26  Score=218.43  Aligned_cols=65  Identities=9%  Similarity=-0.024  Sum_probs=41.8

Q ss_pred             cccccEEeccCcccCCC-cchhhcCCCCCcEEEccCCcCccCc-hhhhhcCCCcCEEEccCCccccc
Q 044176          275 ITIFTTIDLSSNQFQGE-IPQVLGDFKSLIVLNLSHNGLTGSI-PVSFANMIVLESLDLSSNKLHGR  339 (362)
Q Consensus       275 ~~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~i~~~~-~~~~~~~~~L~~L~l~~n~~~~~  339 (362)
                      +++|+.|++++|.+++. .+..+..+++|+.|++++|.+++.. +.....+++|++|++++|++++.
T Consensus       462 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            56677777777776643 3334466677777777777765432 33345677777777777777654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=1.3e-22  Score=173.90  Aligned_cols=223  Identities=20%  Similarity=0.207  Sum_probs=121.8

Q ss_pred             EEEcCCCcccccccCCcCCCcEEEccCCcCCCCCCCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCC
Q 044176           23 YLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIP  102 (362)
Q Consensus        23 ~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~  102 (362)
                      .++.++..++.+|..-.++++.|++++|.+++                     ..+..|.++++|++|++++|.+++..+
T Consensus        11 ~~~c~~~~l~~ip~~l~~~l~~L~ls~n~l~~---------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~   69 (276)
T 2z62_A           11 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRH---------------------LGSYSFFSFPELQVLDLSRCEIQTIED   69 (276)
T ss_dssp             EEECTTSCCSSCCSSSCTTCCEEECTTCCCCE---------------------ECTTTTTTCTTCSEEECTTCCCCEECT
T ss_pred             eEEecCCCccccCCCCCCCccEEECCCCcccc---------------------cCHhHhccccCCcEEECCCCcCCccCH
Confidence            45666666666665444556666666665543                     333344455555555555555542222


Q ss_pred             CCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCC-cchhccC
Q 044176          103 PCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDT-FPSWLGS  181 (362)
Q Consensus       103 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~  181 (362)
                      ..+..+ ++|++|++++|.+....+..+... ++|++|++++|.+.+..+..+..+++|+.|++++|.+.+. .|..+..
T Consensus        70 ~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~  147 (276)
T 2z62_A           70 GAYQSL-SHLSTLILTGNPIQSLALGAFSGL-SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN  147 (276)
T ss_dssp             TTTTTC-TTCCEEECTTCCCCEECTTTTTTC-TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG
T ss_pred             HHccCC-cCCCEEECCCCccCccChhhhcCC-ccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhcc
Confidence            233333 455555555555543333333332 5555555555555544333455556666666666655442 3555666


Q ss_pred             CCCCCeEEccCCcCCCccccccccccCCccc----EEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccc
Q 044176          182 LPGLKILVLRSNRFYGPLCEVNIMLPFEALR----IIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQ  257 (362)
Q Consensus       182 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~----~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  257 (362)
                      +++|++|++++|.+++..+..+  ..+++++    .+++++|.+.+..+.. +.                          
T Consensus       148 l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~l~l~L~ls~n~l~~~~~~~-~~--------------------------  198 (276)
T 2z62_A          148 LTNLEHLDLSSNKIQSIYCTDL--RVLHQMPLLNLSLDLSLNPMNFIQPGA-FK--------------------------  198 (276)
T ss_dssp             CTTCCEEECCSSCCCEECGGGG--HHHHTCTTCCEEEECCSSCCCEECTTS-SC--------------------------
T ss_pred             CCCCCEEECCCCCCCcCCHHHh--hhhhhccccceeeecCCCcccccCccc-cC--------------------------
Confidence            6666666666666554332222  2233333    6777777665322211 10                          


Q ss_pred             cceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCcc
Q 044176          258 DSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTG  314 (362)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~  314 (362)
                                       ..+|+.|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus       199 -----------------~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          199 -----------------EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             -----------------SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred             -----------------CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence                             2357788888888876666667778888888888888774

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=5.6e-23  Score=175.68  Aligned_cols=199  Identities=20%  Similarity=0.237  Sum_probs=130.0

Q ss_pred             CCCCcEEEcCCCccccccc-CCcCCCcEEEccCCcCCCCC-CCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccC
Q 044176           18 WKSLTYLDISNNFLTQIEQ-HPWKNITVLNLQNNTIQGTI-LVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHN   95 (362)
Q Consensus        18 ~~~L~~L~ls~~~i~~~~~-~~~~~L~~L~l~~n~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~   95 (362)
                      +++|+.|+++++.++.++. ..+++|+.|++++|.+.+.. +..+++|++|++++|.+.+..+..|.++++|++|++++|
T Consensus        40 l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  119 (272)
T 3rfs_A           40 LNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN  119 (272)
T ss_dssp             HTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             ccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCC
Confidence            4777777777777777665 45677777777777766533 344677777777777777666666677777777777777


Q ss_pred             cccccCCCC-cccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCC
Q 044176           96 NLSGTIPPC-LGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDT  174 (362)
Q Consensus        96 ~~~~~~~~~-l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  174 (362)
                      +++ .++.. +..+ ++|++|++++|.+.+..+..+. .+++|++|++++|.+++..+..+..+++|+.|++++|.+.+.
T Consensus       120 ~l~-~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  196 (272)
T 3rfs_A          120 QLQ-SLPDGVFDKL-TNLTYLNLAHNQLQSLPKGVFD-KLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV  196 (272)
T ss_dssp             CCC-CCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             cCC-ccCHHHhccC-CCCCEEECCCCccCccCHHHhc-cCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc
Confidence            776 34433 3444 5677777777777633333333 336777777777777755555566777777777777777666


Q ss_pred             cchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchh
Q 044176          175 FPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRW  228 (362)
Q Consensus       175 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~  228 (362)
                      .+..+..+++|++|++++|.+.+         .+++++.+++..|.+.+.+|.+
T Consensus       197 ~~~~~~~l~~L~~L~l~~N~~~~---------~~~~l~~l~~~~n~~~g~ip~~  241 (272)
T 3rfs_A          197 PDGVFDRLTSLQYIWLHDNPWDC---------TCPGIRYLSEWINKHSGVVRNS  241 (272)
T ss_dssp             CTTTTTTCTTCCEEECCSSCBCC---------CTTTTHHHHHHHHHTGGGBBCT
T ss_pred             CHHHHhCCcCCCEEEccCCCccc---------cCcHHHHHHHHHHhCCCcccCc
Confidence            66566677777777777776542         2456666666666666655544

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.89  E-value=1.2e-23  Score=187.34  Aligned_cols=257  Identities=18%  Similarity=0.141  Sum_probs=186.0

Q ss_pred             EEccCcccccCCcccccCCCCCCEEEcccCcccccCC----CCcccccc-cccEEEcccccccCcchhhhhcC----CCC
Q 044176           66 FLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIP----PCLGNFST-QLTILHLNNNYLQGRIPDAFANG----SCD  136 (362)
Q Consensus        66 L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~----~~l~~~~~-~L~~L~l~~~~~~~~~~~~~~~~----~~~  136 (362)
                      +.++++.+.+.+|..+...++|++|++++|.+++..+    ..+..+ + +|++|++++|.+.+..+..+...    .++
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~-~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANT-PASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTC-CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhC-CCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            5677888887777777777779999999999984333    444445 5 89999999999987667666553    278


Q ss_pred             ccEEeccCCcccCCCchhhhc----C-CCCcEEEccCCCCCCCcchhc----cC-CCCCCeEEccCCcCCCcccccc--c
Q 044176          137 LRSLGLNSNKLRGSFPRYLAD----C-TGLEVVNVGNNMIGDTFPSWL----GS-LPGLKILVLRSNRFYGPLCEVN--I  204 (362)
Q Consensus       137 L~~L~l~~~~~~~~~~~~~~~----l-~~L~~L~l~~~~~~~~~~~~~----~~-~~~L~~L~l~~n~~~~~~~~~~--~  204 (362)
                      |++|++++|.+++..+..++.    + ++|+.|++++|.+++..+..+    .. .++|++|++++|.+.+......  .
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            999999999998766665444    4 899999999999977665443    34 3699999999999875433222  2


Q ss_pred             cccCC-cccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhc-ccccEEe
Q 044176          205 MLPFE-ALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRII-TIFTTID  282 (362)
Q Consensus       205 ~~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~  282 (362)
                      +..++ +|++|++++|.+.+..+..+...+..                                       . ++|+.|+
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~---------------------------------------~~~~L~~L~  202 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKFLAS---------------------------------------IPASVTSLD  202 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHT---------------------------------------SCTTCCEEE
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHHHHh---------------------------------------CCCCCCEEE
Confidence            34444 89999999999986555443222111                                       3 4799999


Q ss_pred             ccCcccCCC----cchhhcC-CCCCcEEEccCCcCccCchh----hhhcCCCcCEEEccCCcccccCchhhh----hhHh
Q 044176          283 LSSNQFQGE----IPQVLGD-FKSLIVLNLSHNGLTGSIPV----SFANMIVLESLDLSSNKLHGRIPEQFV----DAEI  349 (362)
Q Consensus       283 l~~n~~~~~----~~~~~~~-~~~L~~L~l~~n~i~~~~~~----~~~~~~~L~~L~l~~n~~~~~~~~~~~----~l~~  349 (362)
                      +++|.+++.    ++..+.. .++|++|++++|.+++..+.    .+..++.|+.|++++|.+.+..++.+.    .++.
T Consensus       203 Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~  282 (362)
T 3goz_A          203 LSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPN  282 (362)
T ss_dssp             CTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTT
T ss_pred             CCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhcc
Confidence            999999864    3444544 46999999999999976553    357779999999999996654444322    2334


Q ss_pred             hhccCCCccccCC
Q 044176          350 CSSFARPDLYTNA  362 (362)
Q Consensus       350 L~~l~~~~l~~n~  362 (362)
                      ++.|...++++|+
T Consensus       283 l~~L~~LdL~~N~  295 (362)
T 3goz_A          283 IQKIILVDKNGKE  295 (362)
T ss_dssp             CCEEEEECTTSCB
T ss_pred             CCceEEEecCCCc
Confidence            4445555788774

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=3e-23  Score=177.38  Aligned_cols=195  Identities=22%  Similarity=0.259  Sum_probs=94.0

Q ss_pred             CCcEEEcCCCccccccc-CCcCCCcEEEccCCcCCCCC-CCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcc
Q 044176           20 SLTYLDISNNFLTQIEQ-HPWKNITVLNLQNNTIQGTI-LVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNL   97 (362)
Q Consensus        20 ~L~~L~ls~~~i~~~~~-~~~~~L~~L~l~~n~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~   97 (362)
                      ++..+++..+.+.+... ..+++|+.|++++|.+.... +..+++|++|++++|.+.+.  ..+..+++|++|++++|.+
T Consensus        20 ~l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l   97 (272)
T 3rfs_A           20 ETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQL   97 (272)
T ss_dssp             HHHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCC
T ss_pred             HHHHHHhcCcccccccccccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCcc
Confidence            34455555555555444 35566666666666655422 22355555555555555432  3455555555555555555


Q ss_pred             cccCCCC-cccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcc
Q 044176           98 SGTIPPC-LGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFP  176 (362)
Q Consensus        98 ~~~~~~~-l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  176 (362)
                      + .++.. +..+ ++|++|++++|.+.+..+..+.. +++|++|++++|.+++..+..+..+++|+.|++++|.+++..+
T Consensus        98 ~-~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  174 (272)
T 3rfs_A           98 Q-SLPNGVFDKL-TNLKELVLVENQLQSLPDGVFDK-LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE  174 (272)
T ss_dssp             C-CCCTTTTTTC-TTCCEEECTTSCCCCCCTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             C-ccChhHhcCC-cCCCEEECCCCcCCccCHHHhcc-CCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCH
Confidence            5 23322 2333 45555555555554222222222 2455555555555554333444455555555555555544444


Q ss_pred             hhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcc
Q 044176          177 SWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEF  221 (362)
Q Consensus       177 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~  221 (362)
                      ..++.+++|++|++++|.+.+..+..  +..+++|+.|++++|.+
T Consensus       175 ~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~l~~N~~  217 (272)
T 3rfs_A          175 GVFDKLTQLKDLRLYQNQLKSVPDGV--FDRLTSLQYIWLHDNPW  217 (272)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCTTT--TTTCTTCCEEECCSSCB
T ss_pred             HHhcCCccCCEEECCCCcCCccCHHH--HhCCcCCCEEEccCCCc
Confidence            44444555555555555444322221  13344444444444433

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.89  E-value=9.5e-24  Score=189.83  Aligned_cols=240  Identities=18%  Similarity=0.184  Sum_probs=147.5

Q ss_pred             CCccEEEccCcccccCCc----ccccCCCCCCEEEcccCccc---ccCCCCc-------ccccccccEEEcccccccC--
Q 044176           61 PSTRAFLFSNNKLFGQIP----PSIYSLSSLEYISLSHNNLS---GTIPPCL-------GNFSTQLTILHLNNNYLQG--  124 (362)
Q Consensus        61 ~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~L~~~~~~---~~~~~~l-------~~~~~~L~~L~l~~~~~~~--  124 (362)
                      ++|++|++++|.+....+    ..+..+++|++|++++|.+.   +.+|..+       ..+ ++|++|++++|.+..  
T Consensus        32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~~~~  110 (386)
T 2ca6_A           32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKC-PKLHTVRLSDNAFGPTA  110 (386)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTC-TTCCEEECCSCCCCTTT
T ss_pred             CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhC-CcccEEECCCCcCCHHH
Confidence            444555555555443322    23455666666666665332   2233332       233 567777777776654  


Q ss_pred             --cchhhhhcCCCCccEEeccCCcccCCCchhhh----cC---------CCCcEEEccCCCCCC-Ccc---hhccCCCCC
Q 044176          125 --RIPDAFANGSCDLRSLGLNSNKLRGSFPRYLA----DC---------TGLEVVNVGNNMIGD-TFP---SWLGSLPGL  185 (362)
Q Consensus       125 --~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~----~l---------~~L~~L~l~~~~~~~-~~~---~~~~~~~~L  185 (362)
                        .+|..+... ++|++|++++|.++...+..+.    .+         ++|+.|++++|.+++ ..+   ..+..+++|
T Consensus       111 ~~~l~~~l~~~-~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L  189 (386)
T 2ca6_A          111 QEPLIDFLSKH-TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL  189 (386)
T ss_dssp             HHHHHHHHHHC-TTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHhC-CCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence              244455443 6777777777776533333332    23         788888888887752 233   345667788


Q ss_pred             CeEEccCCcCCCccc--ccc-ccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceee
Q 044176          186 KILVLRSNRFYGPLC--EVN-IMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTV  262 (362)
Q Consensus       186 ~~L~l~~n~~~~~~~--~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~  262 (362)
                      ++|++++|.+.....  ... .+..+++|+.|++++|.+.......+...                              
T Consensus       190 ~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~------------------------------  239 (386)
T 2ca6_A          190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA------------------------------  239 (386)
T ss_dssp             CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH------------------------------
T ss_pred             CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHH------------------------------
Confidence            888888887763210  111 34667888888888888752111111000                              


Q ss_pred             eecCcchHhhhhcccccEEeccCcccCCC----cchhhc--CCCCCcEEEccCCcCcc----Cchhhh-hcCCCcCEEEc
Q 044176          263 TVKGRDLVLKRIITIFTTIDLSSNQFQGE----IPQVLG--DFKSLIVLNLSHNGLTG----SIPVSF-ANMIVLESLDL  331 (362)
Q Consensus       263 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~--~~~~L~~L~l~~n~i~~----~~~~~~-~~~~~L~~L~l  331 (362)
                               ...+++|+.|++++|.+++.    ++..+.  .+++|+.|+|++|.+++    .+|..+ .++++|++|++
T Consensus       240 ---------l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l  310 (386)
T 2ca6_A          240 ---------LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL  310 (386)
T ss_dssp             ---------GGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred             ---------HccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEc
Confidence                     11157789999999998765    345553  38899999999999986    367776 66899999999


Q ss_pred             cCCcccccCc
Q 044176          332 SSNKLHGRIP  341 (362)
Q Consensus       332 ~~n~~~~~~~  341 (362)
                      ++|++++..+
T Consensus       311 ~~N~l~~~~~  320 (386)
T 2ca6_A          311 NGNRFSEEDD  320 (386)
T ss_dssp             TTSBSCTTSH
T ss_pred             cCCcCCcchh
Confidence            9999997664

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=6.8e-22  Score=170.28  Aligned_cols=203  Identities=22%  Similarity=0.264  Sum_probs=132.9

Q ss_pred             ccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCC
Q 044176           81 IYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTG  160 (362)
Q Consensus        81 ~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~  160 (362)
                      +.+++++++++++++.++ .+|..+.   +.++.|++++|.+....+..+... ++|++|++++|.+++. +. ...+++
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~-~~-~~~l~~   78 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPY-TRLTQLNLDRAELTKL-QV-DGTLPV   78 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGGGTTC-TTCCEEECTTSCCCEE-EC-CSCCTT
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC---CCCCEEEcCCCcCCccCHHHhhcC-CCCCEEECCCCccCcc-cC-CCCCCc
Confidence            456667777777777776 6665543   457777777777764444455443 6777777777776633 22 256677


Q ss_pred             CcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhcc
Q 044176          161 LEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVD  240 (362)
Q Consensus       161 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~  240 (362)
                      |+.|++++|.+. .+|..+..+++|++|++++|.+++..+..  +..+++|++|++++|.+.+..+.. +..        
T Consensus        79 L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~--~~~l~~L~~L~L~~N~l~~~~~~~-~~~--------  146 (290)
T 1p9a_G           79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGA--LRGLGELQELYLKGNELKTLPPGL-LTP--------  146 (290)
T ss_dssp             CCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSST--TTTCTTCCEEECTTSCCCCCCTTT-TTT--------
T ss_pred             CCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHH--HcCCCCCCEEECCCCCCCccChhh-ccc--------
Confidence            777777777774 44555667777777777777776544333  356677777777777776332211 111        


Q ss_pred             ccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhh
Q 044176          241 EKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSF  320 (362)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~  320 (362)
                                                        +++|+.|++++|++++..+..+..+++|+.|++++|+++ .+|..+
T Consensus       147 ----------------------------------l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~  191 (290)
T 1p9a_G          147 ----------------------------------TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGF  191 (290)
T ss_dssp             ----------------------------------CTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTT
T ss_pred             ----------------------------------ccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhh
Confidence                                              456777777777777555556677777788888777777 566667


Q ss_pred             hcCCCcCEEEccCCccc
Q 044176          321 ANMIVLESLDLSSNKLH  337 (362)
Q Consensus       321 ~~~~~L~~L~l~~n~~~  337 (362)
                      ..+++|+.+++++|++.
T Consensus       192 ~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          192 FGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             TTTCCCSEEECCSCCBC
T ss_pred             cccccCCeEEeCCCCcc
Confidence            77777778888777765

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=1.4e-21  Score=168.33  Aligned_cols=202  Identities=23%  Similarity=0.225  Sum_probs=171.0

Q ss_pred             cccCCCCcEEEcCCCcccccccCCcCCCcEEEccCCcCCCC---CCCCCCCccEEEccCcccccCCcccccCCCCCCEEE
Q 044176           15 SQRWKSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGT---ILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYIS   91 (362)
Q Consensus        15 ~~~~~~L~~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~   91 (362)
                      ...+++++.++++++.++.++....++++.|++++|.+.+.   .+..+++|++|++++|.+....+  ...+++|++|+
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~   83 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLD   83 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEE
T ss_pred             ccccCCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEE
Confidence            44568999999999999999987778999999999999864   35668999999999999986433  37899999999


Q ss_pred             cccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCC
Q 044176           92 LSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMI  171 (362)
Q Consensus        92 L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  171 (362)
                      +++|+++ .+|..+..+ ++|++|++++|+++...+..+.. +++|++|++++|.+++..+..|..+++|+.|++++|.+
T Consensus        84 Ls~N~l~-~l~~~~~~l-~~L~~L~l~~N~l~~l~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  160 (290)
T 1p9a_G           84 LSHNQLQ-SLPLLGQTL-PALTVLDVSFNRLTSLPLGALRG-LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL  160 (290)
T ss_dssp             CCSSCCS-SCCCCTTTC-TTCCEEECCSSCCCCCCSSTTTT-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             CCCCcCC-cCchhhccC-CCCCEEECCCCcCcccCHHHHcC-CCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence            9999998 888877777 79999999999998544455554 48999999999999977777888999999999999999


Q ss_pred             CCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCC
Q 044176          172 GDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGF  224 (362)
Q Consensus       172 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  224 (362)
                      ....+..+..+++|+.|++++|.+.......   ...++|+.+++++|.+...
T Consensus       161 ~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~---~~~~~L~~l~L~~Np~~C~  210 (290)
T 1p9a_G          161 TELPAGLLNGLENLDTLLLQENSLYTIPKGF---FGSHLLPFAFLHGNPWLCN  210 (290)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCCCCCCTTT---TTTCCCSEEECCSCCBCCS
T ss_pred             CccCHHHhcCcCCCCEEECCCCcCCccChhh---cccccCCeEEeCCCCccCc
Confidence            8776677889999999999999998644333   4567899999999998643

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.88  E-value=1.5e-23  Score=185.07  Aligned_cols=254  Identities=15%  Similarity=0.157  Sum_probs=136.5

Q ss_pred             CcEEEccCCcCCCCCCCCC--CCccEEEccCcccccCCcccccCCCCCCEEEcccCccccc-CCCCcccccccccEEEcc
Q 044176           42 ITVLNLQNNTIQGTILVPP--PSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGT-IPPCLGNFSTQLTILHLN  118 (362)
Q Consensus        42 L~~L~l~~n~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~-~~~~l~~~~~~L~~L~l~  118 (362)
                      ++.++++++.+....+..+  +.++.+++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+ ++|++|+++
T Consensus        49 ~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~-~~L~~L~L~  126 (336)
T 2ast_B           49 WQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQC-SKLQNLSLE  126 (336)
T ss_dssp             SSEEECTTCBCCHHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTB-CCCSEEECT
T ss_pred             heeeccccccCCHHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhC-CCCCEEeCc
Confidence            5555555555442222222  4555556666555544333 34466666666666665532 33334344 466666666


Q ss_pred             cccccCcchhhhhcCCCCccEEeccCC-cccCC-CchhhhcCCCCcEEEccCC-CCCCC-cchhccCCC-CCCeEEccCC
Q 044176          119 NNYLQGRIPDAFANGSCDLRSLGLNSN-KLRGS-FPRYLADCTGLEVVNVGNN-MIGDT-FPSWLGSLP-GLKILVLRSN  193 (362)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~l~~L~~L~l~~~-~~~~~-~~~~~~~~~-~L~~L~l~~n  193 (362)
                      +|.+.+..+..+.. +++|++|++++| .+++. .+..+..+++|+.|++++| .+++. .+..+..++ +|++|++++|
T Consensus       127 ~~~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~  205 (336)
T 2ast_B          127 GLRLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY  205 (336)
T ss_dssp             TCBCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred             CcccCHHHHHHHhc-CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence            66655445555544 356666666666 34421 3444555666666666666 55432 344455566 6666666666


Q ss_pred             c--CCC-ccccccccccCCcccEEeccCCc-ccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcch
Q 044176          194 R--FYG-PLCEVNIMLPFEALRIIDLSHNE-FTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDL  269 (362)
Q Consensus       194 ~--~~~-~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (362)
                      .  +++ ..+.  .+..+++|++|++++|. +++..+..+                                        
T Consensus       206 ~~~~~~~~l~~--~~~~~~~L~~L~l~~~~~l~~~~~~~l----------------------------------------  243 (336)
T 2ast_B          206 RKNLQKSDLST--LVRRCPNLVHLDLSDSVMLKNDCFQEF----------------------------------------  243 (336)
T ss_dssp             GGGSCHHHHHH--HHHHCTTCSEEECTTCTTCCGGGGGGG----------------------------------------
T ss_pred             cccCCHHHHHH--HHhhCCCCCEEeCCCCCcCCHHHHHHH----------------------------------------
Confidence            2  221 1111  12445666666666665 332222110                                        


Q ss_pred             HhhhhcccccEEeccCcc-cCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCchhhhh
Q 044176          270 VLKRIITIFTTIDLSSNQ-FQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVD  346 (362)
Q Consensus       270 ~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~  346 (362)
                         ..+++|+.|++++|. +++.....+..+++|+.|++++| +++.....+.  ..++.|++++|++++..|..+..
T Consensus       244 ---~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~~  315 (336)
T 2ast_B          244 ---FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTIGN  315 (336)
T ss_dssp             ---GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSCSS
T ss_pred             ---hCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCCcccc
Confidence               115678888888874 33333335677888888888888 5533333332  23556667888888877766554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.88  E-value=7.2e-24  Score=190.64  Aligned_cols=244  Identities=18%  Similarity=0.229  Sum_probs=177.9

Q ss_pred             CCcccccCCCCCCEEEcccCcccccC----CCCcccccccccEEEccccc---ccCcchhhhh------cCCCCccEEec
Q 044176           76 QIPPSIYSLSSLEYISLSHNNLSGTI----PPCLGNFSTQLTILHLNNNY---LQGRIPDAFA------NGSCDLRSLGL  142 (362)
Q Consensus        76 ~~~~~~~~l~~L~~L~L~~~~~~~~~----~~~l~~~~~~L~~L~l~~~~---~~~~~~~~~~------~~~~~L~~L~l  142 (362)
                      .++..+..+++|++|++++|.+++..    +..+..+ ++|++|++++|.   +.+.+|..+.      ..+++|++|++
T Consensus        23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~-~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L  101 (386)
T 2ca6_A           23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK-KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL  101 (386)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTC-TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred             HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhC-CCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence            46677888999999999999998532    2334455 789999999964   3445565552      23489999999


Q ss_pred             cCCcccC----CCchhhhcCCCCcEEEccCCCCCCCcchhcc----CC---------CCCCeEEccCCcCCCccccc--c
Q 044176          143 NSNKLRG----SFPRYLADCTGLEVVNVGNNMIGDTFPSWLG----SL---------PGLKILVLRSNRFYGPLCEV--N  203 (362)
Q Consensus       143 ~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~----~~---------~~L~~L~l~~n~~~~~~~~~--~  203 (362)
                      ++|.++.    .++..+..+++|+.|++++|.+++..+..+.    .+         ++|++|++++|.+.......  .
T Consensus       102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~  181 (386)
T 2ca6_A          102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK  181 (386)
T ss_dssp             CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred             CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence            9999986    3566788899999999999998644333333    33         89999999999887322221  2


Q ss_pred             ccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEec
Q 044176          204 IMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDL  283 (362)
Q Consensus       204 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l  283 (362)
                      .+..+++|++|++++|.+..........                                      .....+++|+.|++
T Consensus       182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~--------------------------------------~~l~~~~~L~~L~L  223 (386)
T 2ca6_A          182 TFQSHRLLHTVKMVQNGIRPEGIEHLLL--------------------------------------EGLAYCQELKVLDL  223 (386)
T ss_dssp             HHHHCTTCCEEECCSSCCCHHHHHHHHH--------------------------------------TTGGGCTTCCEEEC
T ss_pred             HHHhCCCcCEEECcCCCCCHhHHHHHHH--------------------------------------HHhhcCCCccEEEC
Confidence            4467889999999999876211111110                                      00112678999999


Q ss_pred             cCcccC----CCcchhhcCCCCCcEEEccCCcCccC----chhhhhc--CCCcCEEEccCCcccc----cCchhh-hhhH
Q 044176          284 SSNQFQ----GEIPQVLGDFKSLIVLNLSHNGLTGS----IPVSFAN--MIVLESLDLSSNKLHG----RIPEQF-VDAE  348 (362)
Q Consensus       284 ~~n~~~----~~~~~~~~~~~~L~~L~l~~n~i~~~----~~~~~~~--~~~L~~L~l~~n~~~~----~~~~~~-~~l~  348 (362)
                      ++|.++    ..++..+..+++|+.|+|++|.+++.    ++..+..  +++|++|++++|++++    .+|..+ ..++
T Consensus       224 s~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~  303 (386)
T 2ca6_A          224 QDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP  303 (386)
T ss_dssp             CSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCT
T ss_pred             cCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCC
Confidence            999996    45677888999999999999999865    4566644  9999999999999997    477766 4467


Q ss_pred             hhhccCCCccccC
Q 044176          349 ICSSFARPDLYTN  361 (362)
Q Consensus       349 ~L~~l~~~~l~~n  361 (362)
                      +|++|   ++++|
T Consensus       304 ~L~~L---~l~~N  313 (386)
T 2ca6_A          304 DLLFL---ELNGN  313 (386)
T ss_dssp             TCCEE---ECTTS
T ss_pred             CceEE---EccCC
Confidence            77776   66666

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.88  E-value=4e-23  Score=196.22  Aligned_cols=329  Identities=12%  Similarity=-0.004  Sum_probs=224.3

Q ss_pred             ccCCCCcEEEcCCCccccccc-------CCcCCCcEEEccCCcCCCCC-------CCCCCCccEEEccCcccccCCcccc
Q 044176           16 QRWKSLTYLDISNNFLTQIEQ-------HPWKNITVLNLQNNTIQGTI-------LVPPPSTRAFLFSNNKLFGQIPPSI   81 (362)
Q Consensus        16 ~~~~~L~~L~ls~~~i~~~~~-------~~~~~L~~L~l~~n~~~~~~-------~~~~~~L~~L~l~~~~~~~~~~~~~   81 (362)
                      ..+++|++|++++|.+++...       ..+++|+.|++++|.+.+..       ...+++|++|++++|.+.+ ++..+
T Consensus       161 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~  239 (592)
T 3ogk_B          161 THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFF  239 (592)
T ss_dssp             HHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHH
T ss_pred             hhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHH
Confidence            356999999999999876642       36789999999999887322       1238999999999999885 67888


Q ss_pred             cCCCCCCEEEcccCccc---ccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCc-hhhhc
Q 044176           82 YSLSSLEYISLSHNNLS---GTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFP-RYLAD  157 (362)
Q Consensus        82 ~~l~~L~~L~L~~~~~~---~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~  157 (362)
                      .++++|++|++++....   ...+..+... ++|+.++++++... .+|..+.. +++|++|++++|.+++... ..+..
T Consensus       240 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~-~l~~~~~~-~~~L~~L~Ls~~~l~~~~~~~~~~~  316 (592)
T 3ogk_B          240 KAAANLEEFCGGSLNEDIGMPEKYMNLVFP-RKLCRLGLSYMGPN-EMPILFPF-AAQIRKLDLLYALLETEDHCTLIQK  316 (592)
T ss_dssp             HHCTTCCEEEECBCCCCTTCTTSSSCCCCC-TTCCEEEETTCCTT-TGGGGGGG-GGGCCEEEETTCCCCHHHHHHHHTT
T ss_pred             hhhhHHHhhcccccccccchHHHHHHhhcc-ccccccCccccchh-HHHHHHhh-cCCCcEEecCCCcCCHHHHHHHHHh
Confidence            99999999999864332   1233445555 68999999886433 55655554 4899999999998664333 34678


Q ss_pred             CCCCcEEEccCCCCCCCcchhccCCCCCCeEEccC-----------CcCCCccccccccccCCcccEEeccCCcccCCCc
Q 044176          158 CTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRS-----------NRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLP  226 (362)
Q Consensus       158 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-----------n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  226 (362)
                      +++|+.|++.++......+.....+++|++|++++           +.+++..... ....+++|++|+++.+.+++...
T Consensus       317 ~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~-l~~~~~~L~~L~l~~~~l~~~~~  395 (592)
T 3ogk_B          317 CPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIA-LAQGCQELEYMAVYVSDITNESL  395 (592)
T ss_dssp             CTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHH-HHHHCTTCSEEEEEESCCCHHHH
T ss_pred             CcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHH-HHhhCccCeEEEeecCCccHHHH
Confidence            89999999984322222333346788999999993           3443221111 12457899999998888876666


Q ss_pred             hhHHhhhhhhhhccccCCC-cccccCCccccccceeeeecCcchHhhhhcccccEEeccCcc--cCCCcchhhc-CCCCC
Q 044176          227 RWIFVSLETMKNVDEKGSD-GLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQ--FQGEIPQVLG-DFKSL  302 (362)
Q Consensus       227 ~~~~~~~~~l~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~--~~~~~~~~~~-~~~~L  302 (362)
                      ..+...+++|+.+++..+. ...+.+..          .+.........+++|+.|++++|.  +++..+..+. .+++|
T Consensus       396 ~~l~~~~~~L~~L~l~~~~~~n~l~~~p----------~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L  465 (592)
T 3ogk_B          396 ESIGTYLKNLCDFRLVLLDREERITDLP----------LDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNV  465 (592)
T ss_dssp             HHHHHHCCSCCEEEEEECSCCSCCSSCC----------CHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTC
T ss_pred             HHHHhhCCCCcEEEEeecCCCccccCch----------HHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccc
Confidence            6655568888988886432 11111100          000111223347899999997654  6655544443 58999


Q ss_pred             cEEEccCCcCccC-chhhhhcCCCcCEEEccCCcccccCch-hhhhhHhhhccCCCccccCC
Q 044176          303 IVLNLSHNGLTGS-IPVSFANMIVLESLDLSSNKLHGRIPE-QFVDAEICSSFARPDLYTNA  362 (362)
Q Consensus       303 ~~L~l~~n~i~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~l~~~~l~~n~  362 (362)
                      +.|++++|.+++. ++..+..+++|++|++++|++++.... .+..+++|++|   ++++|+
T Consensus       466 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L---~ls~n~  524 (592)
T 3ogk_B          466 RWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYL---WVQGYR  524 (592)
T ss_dssp             CEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEE---EEESCB
T ss_pred             eEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCee---ECcCCc
Confidence            9999999998853 344568899999999999998765333 34456666665   666663

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.87  E-value=2e-24  Score=205.31  Aligned_cols=126  Identities=17%  Similarity=0.146  Sum_probs=69.7

Q ss_pred             ccCCCCcEEEcCCCccccccc----CCcCCCcEEEccCC-cCCCC----CCCCCCCccEEEccCcccccCCccccc----
Q 044176           16 QRWKSLTYLDISNNFLTQIEQ----HPWKNITVLNLQNN-TIQGT----ILVPPPSTRAFLFSNNKLFGQIPPSIY----   82 (362)
Q Consensus        16 ~~~~~L~~L~ls~~~i~~~~~----~~~~~L~~L~l~~n-~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~~~----   82 (362)
                      ..+++|++|+++++.+++...    ..+++|+.|++++| .+...    ....+++|++|++++|.+.+..+..+.    
T Consensus       102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~  181 (594)
T 2p1m_B          102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD  181 (594)
T ss_dssp             HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred             HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence            345788888888877665443    24677888888777 33321    112367788888887776654443333    


Q ss_pred             CCCCCCEEEcccCc--ccccCCCCcccccccccEEEcccc-cccCcchhhhhcCCCCccEEecc
Q 044176           83 SLSSLEYISLSHNN--LSGTIPPCLGNFSTQLTILHLNNN-YLQGRIPDAFANGSCDLRSLGLN  143 (362)
Q Consensus        83 ~l~~L~~L~L~~~~--~~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~  143 (362)
                      .+++|++|++++|.  +.......+....++|++|++++| .+. .++..+... ++|++|.++
T Consensus       182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~l~~~~~~~-~~L~~L~l~  243 (594)
T 2p1m_B          182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE-KLATLLQRA-PQLEELGTG  243 (594)
T ss_dssp             TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH-HHHHHHHHC-TTCSEEECS
T ss_pred             cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH-HHHHHHhcC-CcceEcccc
Confidence            45677788877775  211101111111256777777766 222 233333332 455555433

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.87  E-value=3e-22  Score=176.66  Aligned_cols=227  Identities=15%  Similarity=0.124  Sum_probs=173.5

Q ss_pred             CCccEEEccCcccccCCcccccCC--CCCCEEEcccCcccccCCCCcccccccccEEEcccccccCc-chhhhhcCCCCc
Q 044176           61 PSTRAFLFSNNKLFGQIPPSIYSL--SSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGR-IPDAFANGSCDL  137 (362)
Q Consensus        61 ~~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L  137 (362)
                      ..++.++++++.+.   +..+..+  ++++.|++++|.+.+ .+..++.+ ++|++|++++|.+.+. ++..+.. +++|
T Consensus        47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~-~~~~~~~~-~~L~~L~L~~~~l~~~~~~~~~~~-~~~L  120 (336)
T 2ast_B           47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQ-PLAEHFSP-FRVQHMDLSNSVIEVSTLHGILSQ-CSKL  120 (336)
T ss_dssp             TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECS-CCCSCCCC-BCCCEEECTTCEECHHHHHHHHTT-BCCC
T ss_pred             hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccc-cchhhccC-CCCCEEEccCCCcCHHHHHHHHhh-CCCC
Confidence            34789999998775   4566667  899999999999984 44446666 7899999999998754 5555554 4899


Q ss_pred             cEEeccCCcccCCCchhhhcCCCCcEEEccCC-CCCCC-cchhccCCCCCCeEEccCC-cCCCcc-ccccccccCC-ccc
Q 044176          138 RSLGLNSNKLRGSFPRYLADCTGLEVVNVGNN-MIGDT-FPSWLGSLPGLKILVLRSN-RFYGPL-CEVNIMLPFE-ALR  212 (362)
Q Consensus       138 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~-~~~~~~~~~~L~~L~l~~n-~~~~~~-~~~~~~~~~~-~L~  212 (362)
                      ++|++++|.+++..+..++.+++|+.|++++| .+++. .+..+..+++|++|++++| .+++.. +.  .+..++ +|+
T Consensus       121 ~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~--~~~~l~~~L~  198 (336)
T 2ast_B          121 QNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV--AVAHVSETIT  198 (336)
T ss_dssp             SEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH--HHHHSCTTCC
T ss_pred             CEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH--HHHhcccCCC
Confidence            99999999988777788888999999999999 56542 5566778999999999999 776421 22  236678 999


Q ss_pred             EEeccCCc--ccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCcc-cC
Q 044176          213 IIDLSHNE--FTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQ-FQ  289 (362)
Q Consensus       213 ~L~l~~n~--~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-~~  289 (362)
                      +|++++|.  +.+   ..+.                                       .....+++|+.|++++|. ++
T Consensus       199 ~L~l~~~~~~~~~---~~l~---------------------------------------~~~~~~~~L~~L~l~~~~~l~  236 (336)
T 2ast_B          199 QLNLSGYRKNLQK---SDLS---------------------------------------TLVRRCPNLVHLDLSDSVMLK  236 (336)
T ss_dssp             EEECCSCGGGSCH---HHHH---------------------------------------HHHHHCTTCSEEECTTCTTCC
T ss_pred             EEEeCCCcccCCH---HHHH---------------------------------------HHHhhCCCCCEEeCCCCCcCC
Confidence            99999884  331   1100                                       011226789999999999 77


Q ss_pred             CCcchhhcCCCCCcEEEccCCc-CccCchhhhhcCCCcCEEEccCCcccc
Q 044176          290 GEIPQVLGDFKSLIVLNLSHNG-LTGSIPVSFANMIVLESLDLSSNKLHG  338 (362)
Q Consensus       290 ~~~~~~~~~~~~L~~L~l~~n~-i~~~~~~~~~~~~~L~~L~l~~n~~~~  338 (362)
                      +..+..+..+++|+.|++++|. +.......+.++++|++|++++| +++
T Consensus       237 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~  285 (336)
T 2ast_B          237 NDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD  285 (336)
T ss_dssp             GGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT
T ss_pred             HHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH
Confidence            7778888999999999999995 44333446889999999999999 443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.87  E-value=4.9e-21  Score=166.51  Aligned_cols=147  Identities=22%  Similarity=0.310  Sum_probs=68.3

Q ss_pred             CCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccE
Q 044176           60 PPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRS  139 (362)
Q Consensus        60 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  139 (362)
                      +++|++|++++|.+.. ++ .+..+++|++|++++|.++ .++. +..+ ++|++|++++|.+.. ++ .+.. +++|++
T Consensus        40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~-~~~~-~~~l-~~L~~L~L~~n~l~~-~~-~~~~-l~~L~~  111 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQIT-DLAP-LKNL-TKITELELSGNPLKN-VS-AIAG-LQSIKT  111 (308)
T ss_dssp             HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG-GTTC-CSCCEEECCSCCCSC-CG-GGTT-CTTCCE
T ss_pred             cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCC-CChh-HccC-CCCCEEEccCCcCCC-ch-hhcC-CCCCCE
Confidence            4555555555555543 22 3555555555555555555 3333 3333 455555555555542 22 2222 245555


Q ss_pred             EeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCC
Q 044176          140 LGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHN  219 (362)
Q Consensus       140 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n  219 (362)
                      |++++|.+++. + .+..+++|+.|++++|.+.+..+  +..+++|++|++++|.+.+..+    +..+++|+.|++++|
T Consensus       112 L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~l~~n  183 (308)
T 1h6u_A          112 LDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP----LANLSKLTTLKADDN  183 (308)
T ss_dssp             EECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSS
T ss_pred             EECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh----hcCCCCCCEEECCCC
Confidence            55555555422 2 24445555555555554433222  4444455555555444443211    234444444444444


Q ss_pred             ccc
Q 044176          220 EFT  222 (362)
Q Consensus       220 ~~~  222 (362)
                      .+.
T Consensus       184 ~l~  186 (308)
T 1h6u_A          184 KIS  186 (308)
T ss_dssp             CCC
T ss_pred             ccC
Confidence            443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.86  E-value=4.6e-22  Score=173.35  Aligned_cols=231  Identities=18%  Similarity=0.179  Sum_probs=151.3

Q ss_pred             CCccEEEccCcccccCCcc---cccCCCCCCEEEcccCcccccCCCCc--ccccccccEEEcccccccCcch----hhhh
Q 044176           61 PSTRAFLFSNNKLFGQIPP---SIYSLSSLEYISLSHNNLSGTIPPCL--GNFSTQLTILHLNNNYLQGRIP----DAFA  131 (362)
Q Consensus        61 ~~L~~L~l~~~~~~~~~~~---~~~~l~~L~~L~L~~~~~~~~~~~~l--~~~~~~L~~L~l~~~~~~~~~~----~~~~  131 (362)
                      ..++.+.+.++.+......   .+..+++|++|++++|.+++..|..+  ..+ ++|++|++++|.+.+..+    ..+.
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~-~~L~~L~Ls~n~i~~~~~~~~~~~~~  142 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATG-LALSSLRLRNVSWATGRSWLAELQQW  142 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCC-BCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccC-CCCCEEEeecccccchhhhhHHHHhh
Confidence            3467777777765421111   12235668888888888886667666  445 688888888888775433    2223


Q ss_pred             cCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCC--c--chhccCCCCCCeEEccCCcCCCcccccc-ccc
Q 044176          132 NGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDT--F--PSWLGSLPGLKILVLRSNRFYGPLCEVN-IML  206 (362)
Q Consensus       132 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~--~~~~~~~~~L~~L~l~~n~~~~~~~~~~-~~~  206 (362)
                       .+++|++|++++|.+.+..+..+..+++|+.|++++|++.+.  .  +..++.+++|++|++++|.++....... .+.
T Consensus       143 -~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~  221 (310)
T 4glp_A          143 -LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAA  221 (310)
T ss_dssp             -BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHH
T ss_pred             -hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHh
Confidence             347888888888888766667777888888888888876432  1  1223567788888888887754222211 124


Q ss_pred             cCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCc
Q 044176          207 PFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSN  286 (362)
Q Consensus       207 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n  286 (362)
                      .+++|++|++++|.+.+..|..+. .+.                                       .+++|+.|++++|
T Consensus       222 ~l~~L~~L~Ls~N~l~~~~p~~~~-~~~---------------------------------------~~~~L~~L~Ls~N  261 (310)
T 4glp_A          222 AGVQPHSLDLSHNSLRATVNPSAP-RCM---------------------------------------WSSALNSLNLSFA  261 (310)
T ss_dssp             HTCCCSSEECTTSCCCCCCCSCCS-SCC---------------------------------------CCTTCCCEECCSS
T ss_pred             cCCCCCEEECCCCCCCccchhhHH-hcc---------------------------------------CcCcCCEEECCCC
Confidence            567788888888877755443210 000                                       0357888888888


Q ss_pred             ccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccc
Q 044176          287 QFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHG  338 (362)
Q Consensus       287 ~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~  338 (362)
                      +++ .+|..+.  ++|+.|++++|++++. |. +..+++|+.|++++|++++
T Consensus       262 ~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          262 GLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             CCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            887 4555543  7888888888888843 33 6777888888888888874

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.86  E-value=3.5e-22  Score=174.12  Aligned_cols=230  Identities=20%  Similarity=0.196  Sum_probs=152.5

Q ss_pred             CCCCCEEEcccCcccccCCC---CcccccccccEEEcccccccCcchhhhh-cCCCCccEEeccCCcccCCCc----hhh
Q 044176           84 LSSLEYISLSHNNLSGTIPP---CLGNFSTQLTILHLNNNYLQGRIPDAFA-NGSCDLRSLGLNSNKLRGSFP----RYL  155 (362)
Q Consensus        84 l~~L~~L~L~~~~~~~~~~~---~l~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~----~~~  155 (362)
                      ...++.+.+.++.++.....   ..... ++|++|++++|.+.+..|..+. ..+++|++|++++|.+++..+    ..+
T Consensus        63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~  141 (310)
T 4glp_A           63 ALRVRRLTVGAAQVPAQLLVGALRVLAY-SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ  141 (310)
T ss_dssp             SCCCCEEEECSCCCBHHHHHHHHHHHHH-SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred             hcceeEEEEeCCcCCHHHHHHHHHhccc-CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence            34567777777766521101   11122 4688888888888777776662 334788888888888875433    344


Q ss_pred             hcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCc--cccccccccCCcccEEeccCCcccCCCchhHHhhh
Q 044176          156 ADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGP--LCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSL  233 (362)
Q Consensus       156 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~  233 (362)
                      ..+++|+.|++++|.+.+..+..++.+++|++|++++|++.+.  .+....+..+++|++|++++|.+.. .+....   
T Consensus       142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~---  217 (310)
T 4glp_A          142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCA---  217 (310)
T ss_dssp             TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHH---
T ss_pred             hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHH---
Confidence            5688888888888888777777788888888888888876542  1112223567788888888888752 221100   


Q ss_pred             hhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCC---CCCcEEEccCC
Q 044176          234 ETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDF---KSLIVLNLSHN  310 (362)
Q Consensus       234 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~---~~L~~L~l~~n  310 (362)
                                                          .....+++|+.|++++|.+++..|..+..+   ++|+.|++++|
T Consensus       218 ------------------------------------~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N  261 (310)
T 4glp_A          218 ------------------------------------ALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA  261 (310)
T ss_dssp             ------------------------------------HHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS
T ss_pred             ------------------------------------HHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC
Confidence                                                001125678888888888887666666555   68888888888


Q ss_pred             cCccCchhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhccCCCccccCC
Q 044176          311 GLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFARPDLYTNA  362 (362)
Q Consensus       311 ~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~~~~l~~n~  362 (362)
                      +++ .+|..+.  ++|++|++++|++++. |. +..+++|+.|   ++++|+
T Consensus       262 ~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L---~L~~N~  305 (310)
T 4glp_A          262 GLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNL---TLDGNP  305 (310)
T ss_dssp             CCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCE---ECSSTT
T ss_pred             CCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEE---ECcCCC
Confidence            888 5566554  7888888888888853 33 4555555554   777764

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=1.4e-20  Score=163.62  Aligned_cols=191  Identities=24%  Similarity=0.335  Sum_probs=148.3

Q ss_pred             cCCCCcEEEcCCCccccccc-CCcCCCcEEEccCCcCCCCC-CCCCCCccEEEccCcccccCCcccccCCCCCCEEEccc
Q 044176           17 RWKSLTYLDISNNFLTQIEQ-HPWKNITVLNLQNNTIQGTI-LVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSH   94 (362)
Q Consensus        17 ~~~~L~~L~ls~~~i~~~~~-~~~~~L~~L~l~~n~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~   94 (362)
                      .+++|+.|+++++.++.++. ..+++|+.|++++|.+.+.. +..+++|++|++++|.+.+.  +.+..+++|++|++++
T Consensus        39 ~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~  116 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTS  116 (308)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTT
T ss_pred             HcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECCC
Confidence            35889999999998888776 46788999999999887644 55588899999999888753  4688888999999999


Q ss_pred             CcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCC
Q 044176           95 NNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDT  174 (362)
Q Consensus        95 ~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  174 (362)
                      |.++ .++. +..+ ++|++|++++|.+.+ ++. +.. +++|++|++++|.+++. +. +..+++|+.|++++|.+.+.
T Consensus       117 n~l~-~~~~-l~~l-~~L~~L~l~~n~l~~-~~~-l~~-l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~  188 (308)
T 1h6u_A          117 TQIT-DVTP-LAGL-SNLQVLYLDLNQITN-ISP-LAG-LTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDI  188 (308)
T ss_dssp             SCCC-CCGG-GTTC-TTCCEEECCSSCCCC-CGG-GGG-CTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC
T ss_pred             CCCC-Cchh-hcCC-CCCCEEECCCCccCc-Ccc-ccC-CCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcC
Confidence            9887 4543 5555 688999999888874 333 443 47889999999888743 33 78888899999988888665


Q ss_pred             cchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccC
Q 044176          175 FPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTG  223 (362)
Q Consensus       175 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~  223 (362)
                      .+  +..+++|++|++++|.+.+..+    +..+++|+.|++++|.+.+
T Consensus       189 ~~--l~~l~~L~~L~L~~N~l~~~~~----l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          189 SP--LASLPNLIEVHLKNNQISDVSP----LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             GG--GGGCTTCCEEECTTSCCCBCGG----GTTCTTCCEEEEEEEEEEC
T ss_pred             hh--hcCCCCCCEEEccCCccCcccc----ccCCCCCCEEEccCCeeec
Confidence            43  7788889999998888876442    4778888899988888863

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.86  E-value=2.4e-20  Score=157.38  Aligned_cols=180  Identities=20%  Similarity=0.217  Sum_probs=91.2

Q ss_pred             CCCcEEEcCCCcccccccCCcCCCcEEEccCCcCCCCCCCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCccc
Q 044176           19 KSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLS   98 (362)
Q Consensus        19 ~~L~~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~   98 (362)
                      +..+.++++++.++.++....++++.|++++|.+.+                     ..+..|.++++|++|++++|.++
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~---------------------~~~~~~~~l~~L~~L~L~~n~l~   72 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLAT---------------------LSDATFRGLTKLTWLNLDYNQLQ   72 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCC---------------------CCTTTTTTCTTCCEEECTTSCCC
T ss_pred             CCCeEEecCCCCccccCCCCCCCCCEEEccCCCcCc---------------------cCHhHhcCcccCCEEECCCCcCC
Confidence            345677777777777776555566666666665554                     33344444455555555555444


Q ss_pred             ccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchh
Q 044176           99 GTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSW  178 (362)
Q Consensus        99 ~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  178 (362)
                      +..+..+..+ ++|++|++++|.+....+..+. .+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..
T Consensus        73 ~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  150 (251)
T 3m19_A           73 TLSAGVFDDL-TELGTLGLANNQLASLPLGVFD-HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGA  150 (251)
T ss_dssp             CCCTTTTTTC-TTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             ccCHhHhccC-CcCCEEECCCCcccccChhHhc-ccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHH
Confidence            2222223333 3455555555544422222222 2245555555555555433344455555555555555554444444


Q ss_pred             ccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccC
Q 044176          179 LGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTG  223 (362)
Q Consensus       179 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~  223 (362)
                      +..+++|++|++++|.+.+..+..  +..+++|+.|++++|.+..
T Consensus       151 ~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          151 FDKLTNLQTLSLSTNQLQSVPHGA--FDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCTTT--TTTCTTCCEEECCSCCBCT
T ss_pred             cCcCcCCCEEECCCCcCCccCHHH--HhCCCCCCEEEeeCCceeC
Confidence            555555555555555555433322  2445556666666665543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.85  E-value=8.8e-20  Score=153.95  Aligned_cols=178  Identities=21%  Similarity=0.243  Sum_probs=144.6

Q ss_pred             CccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEe
Q 044176           62 STRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLG  141 (362)
Q Consensus        62 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  141 (362)
                      ..++++++++.+. .+|..+.  +.+++|++++|.+++..+..+..+ ++|++|++++|.+.+..+..+.. +++|++|+
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~   89 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGL-TKLTWLNLDYNQLQTLSAGVFDD-LTELGTLG   89 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTC-TTCCEEECTTSCCCCCCTTTTTT-CTTCCEEE
T ss_pred             CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCc-ccCCEEECCCCcCCccCHhHhcc-CCcCCEEE
Confidence            3456777777776 4555553  689999999999995555566666 79999999999998655555555 48999999


Q ss_pred             ccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcc
Q 044176          142 LNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEF  221 (362)
Q Consensus       142 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~  221 (362)
                      +++|.++...+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+.+..+..  +..+++|++|++++|.+
T Consensus        90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--~~~l~~L~~L~L~~N~l  167 (251)
T 3m19_A           90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGA--FDKLTNLQTLSLSTNQL  167 (251)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT--TTTCTTCCEEECCSSCC
T ss_pred             CCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHH--cCcCcCCCEEECCCCcC
Confidence            9999999777778899999999999999998777777889999999999999998755533  47789999999999999


Q ss_pred             cCCCchhHHhhhhhhhhccccCCCcc
Q 044176          222 TGFLPRWIFVSLETMKNVDEKGSDGL  247 (362)
Q Consensus       222 ~~~~~~~~~~~~~~l~~l~~~~~~~~  247 (362)
                      .+..+ ..+..+++++.+++.++...
T Consensus       168 ~~~~~-~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          168 QSVPH-GAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             SCCCT-TTTTTCTTCCEEECCSCCBC
T ss_pred             CccCH-HHHhCCCCCCEEEeeCCcee
Confidence            85444 44788899999999887643

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=9.8e-21  Score=158.63  Aligned_cols=191  Identities=19%  Similarity=0.249  Sum_probs=109.9

Q ss_pred             CCCcEEEcCCCcccccccC---CcCCCcEEEccCCc-CCCCC---CCCCCCccEEEccC-cccccCCcccccCCCCCCEE
Q 044176           19 KSLTYLDISNNFLTQIEQH---PWKNITVLNLQNNT-IQGTI---LVPPPSTRAFLFSN-NKLFGQIPPSIYSLSSLEYI   90 (362)
Q Consensus        19 ~~L~~L~ls~~~i~~~~~~---~~~~L~~L~l~~n~-~~~~~---~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L   90 (362)
                      ++++.|++++|+++.+++.   .+++|+.|++++|. ++...   +..+++|++|++++ |.+....+..|.++++|++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            4677777777777766652   45667777777665 54322   33466666677666 66665555566666667777


Q ss_pred             EcccCcccccCCCCccccccccc---EEEcccc-cccCcchhhhhcCCCCcc-EEeccCCcccCCCchhhhcCCCCcEEE
Q 044176           91 SLSHNNLSGTIPPCLGNFSTQLT---ILHLNNN-YLQGRIPDAFANGSCDLR-SLGLNSNKLRGSFPRYLADCTGLEVVN  165 (362)
Q Consensus        91 ~L~~~~~~~~~~~~l~~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~l~~L~~L~  165 (362)
                      ++++|.++ .+|. +..+ ++|+   +|++++| .+. .+|......+++|+ +|++++|.++...+..+.. ++|+.|+
T Consensus       111 ~l~~n~l~-~lp~-~~~l-~~L~~L~~L~l~~N~~l~-~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~  185 (239)
T 2xwt_C          111 GIFNTGLK-MFPD-LTKV-YSTDIFFILEITDNPYMT-SIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVY  185 (239)
T ss_dssp             EEEEECCC-SCCC-CTTC-CBCCSEEEEEEESCTTCC-EECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEE
T ss_pred             eCCCCCCc-cccc-cccc-cccccccEEECCCCcchh-hcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEE
Confidence            77666666 4554 3333 4555   6666666 555 33333222336666 6666666666222223333 5666666


Q ss_pred             ccCCC-CCCCcchhccCC-CCCCeEEccCCcCCCccccccccccCCcccEEeccCC
Q 044176          166 VGNNM-IGDTFPSWLGSL-PGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHN  219 (362)
Q Consensus       166 l~~~~-~~~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n  219 (362)
                      +++|+ +++..+..+..+ ++|+.|++++|++++....     .+++|+.|+++++
T Consensus       186 L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~-----~~~~L~~L~l~~~  236 (239)
T 2xwt_C          186 LNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK-----GLEHLKELIARNT  236 (239)
T ss_dssp             CTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT-----TCTTCSEEECTTC
T ss_pred             cCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh-----HhccCceeeccCc
Confidence            66663 554444556666 6666666666666543221     3456666665543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.84  E-value=4.5e-21  Score=160.73  Aligned_cols=179  Identities=18%  Similarity=0.157  Sum_probs=96.8

Q ss_pred             cccEEEcccccccCcchhhhhcCCCCccEEeccCCc-ccCCCchhhhcCCCCcEEEccC-CCCCCCcchhccCCCCCCeE
Q 044176          111 QLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNK-LRGSFPRYLADCTGLEVVNVGN-NMIGDTFPSWLGSLPGLKIL  188 (362)
Q Consensus       111 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L  188 (362)
                      ++++|++++|.++...+..+.. +++|++|++++|. ++...+..|..+++|+.|++++ |.+....+..+..+++|++|
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~-l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSN-LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTT-CTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             cccEEEEeCCcceEECHHHccC-CCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            4556666666555222223332 3566666666664 5533344555666666666665 55554444555666666666


Q ss_pred             EccCCcCCCccccccccccCCccc---EEeccCC-cccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeee
Q 044176          189 VLRSNRFYGPLCEVNIMLPFEALR---IIDLSHN-EFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTV  264 (362)
Q Consensus       189 ~l~~n~~~~~~~~~~~~~~~~~L~---~L~l~~n-~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~  264 (362)
                      ++++|.+.+. +.   +..+++|+   +|++++| .+.+..+.. +..                                
T Consensus       111 ~l~~n~l~~l-p~---~~~l~~L~~L~~L~l~~N~~l~~i~~~~-~~~--------------------------------  153 (239)
T 2xwt_C          111 GIFNTGLKMF-PD---LTKVYSTDIFFILEITDNPYMTSIPVNA-FQG--------------------------------  153 (239)
T ss_dssp             EEEEECCCSC-CC---CTTCCBCCSEEEEEEESCTTCCEECTTT-TTT--------------------------------
T ss_pred             eCCCCCCccc-cc---cccccccccccEEECCCCcchhhcCccc-ccc--------------------------------
Confidence            6666665542 22   24444554   6666666 554221111 111                                


Q ss_pred             cCcchHhhhhccccc-EEeccCcccCCCcchhhcCCCCCcEEEccCCc-CccCchhhhhcC-CCcCEEEccCCcccc
Q 044176          265 KGRDLVLKRIITIFT-TIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNG-LTGSIPVSFANM-IVLESLDLSSNKLHG  338 (362)
Q Consensus       265 ~~~~~~~~~~~~~L~-~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-i~~~~~~~~~~~-~~L~~L~l~~n~~~~  338 (362)
                                +++|+ .|++++|+++...+..+.. ++|+.|++++|+ +++..+..|..+ ++|++|++++|+++.
T Consensus       154 ----------l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~  219 (239)
T 2xwt_C          154 ----------LCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA  219 (239)
T ss_dssp             ----------TBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC
T ss_pred             ----------hhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc
Confidence                      45566 6666666665333333333 566666776663 664445556666 667777777766664

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.84  E-value=3.4e-23  Score=196.76  Aligned_cols=332  Identities=13%  Similarity=0.065  Sum_probs=182.6

Q ss_pred             CCCcccccCCccccccCCCCcEEEcCCC-ccccc--cc--CCcCCCcEEEccCCcCCCCC-------CCCCCCccEEEcc
Q 044176            2 SNNRIRGRISKSDSQRWKSLTYLDISNN-FLTQI--EQ--HPWKNITVLNLQNNTIQGTI-------LVPPPSTRAFLFS   69 (362)
Q Consensus         2 ~~n~~~~~~~~~~~~~~~~L~~L~ls~~-~i~~~--~~--~~~~~L~~L~l~~n~~~~~~-------~~~~~~L~~L~l~   69 (362)
                      ++|.+++..+..+...+++|+.|++++| .++..  +.  ..+++|++|++++|.+++..       +..+++|++|+++
T Consensus       113 ~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~  192 (594)
T 2p1m_B          113 KRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNIS  192 (594)
T ss_dssp             ESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECT
T ss_pred             eCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEec
Confidence            4566766656555545699999999988 55542  22  36789999999988866422       2347789999998


Q ss_pred             Ccc--cccC-CcccccCCCCCCEEEcccC-cccccCCCCcccccccccEEEccccc------------------------
Q 044176           70 NNK--LFGQ-IPPSIYSLSSLEYISLSHN-NLSGTIPPCLGNFSTQLTILHLNNNY------------------------  121 (362)
Q Consensus        70 ~~~--~~~~-~~~~~~~l~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~------------------------  121 (362)
                      +|.  +... ++..+.++++|++|++++| .+. .++..+..+ ++|++|++..+.                        
T Consensus       193 ~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~l~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~L  270 (594)
T 2p1m_B          193 CLASEVSFSALERLVTRCPNLKSLKLNRAVPLE-KLATLLQRA-PQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCL  270 (594)
T ss_dssp             TCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH-HHHHHHHHC-TTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEE
T ss_pred             ccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH-HHHHHHhcC-CcceEcccccccCccchhhHHHHHHHHhcCCCcccc
Confidence            886  2211 1122345688999998887 333 344334343 466666644331                        


Q ss_pred             --ccC----cchhhhhcCCCCccEEeccCCcccCCC-chhhhcCCCCcEEEccCCCCCCCc-chhccCCCCCCeEEccC-
Q 044176          122 --LQG----RIPDAFANGSCDLRSLGLNSNKLRGSF-PRYLADCTGLEVVNVGNNMIGDTF-PSWLGSLPGLKILVLRS-  192 (362)
Q Consensus       122 --~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~-  192 (362)
                        +..    .++..+.. +++|++|++++|.+++.. ...+..+++|+.|++.+| +.+.. +.....+++|++|++.. 
T Consensus       271 s~~~~~~~~~l~~~~~~-~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~  348 (594)
T 2p1m_B          271 SGFWDAVPAYLPAVYSV-CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPS  348 (594)
T ss_dssp             ECCBTCCGGGGGGGHHH-HTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECS
T ss_pred             cCCcccchhhHHHHHHh-hCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecC
Confidence              110    12222222 367888888877755322 223456777888887776 32221 22223467777777743 


Q ss_pred             --------CcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhcccc-----CCCcccccC----Cc--
Q 044176          193 --------NRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEK-----GSDGLYMQG----EE--  253 (362)
Q Consensus       193 --------n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~-----~~~~~~~~~----~~--  253 (362)
                              +.+++...... ...+++|+.|.+..+.+++.....+...+++|+.+++.     .+..+....    ..  
T Consensus       349 ~~~g~~~~~~l~~~~l~~l-~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l  427 (594)
T 2p1m_B          349 EPFVMEPNVALTEQGLVSV-SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAI  427 (594)
T ss_dssp             CTTCSSCSSCCCHHHHHHH-HHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHH
T ss_pred             cccccccCCCCCHHHHHHH-HHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHH
Confidence                    22222111111 12366777777776766644444444456777777766     222222100    00  


Q ss_pred             -cccccceeeeecC--cc---hHhhhhcccccEEeccCcccCCCcchhh-cCCCCCcEEEccCCcCccCchh-hhhcCCC
Q 044176          254 -DYYQDSVTVTVKG--RD---LVLKRIITIFTTIDLSSNQFQGEIPQVL-GDFKSLIVLNLSHNGLTGSIPV-SFANMIV  325 (362)
Q Consensus       254 -~~~~~~~~~~~~~--~~---~~~~~~~~~L~~L~l~~n~~~~~~~~~~-~~~~~L~~L~l~~n~i~~~~~~-~~~~~~~  325 (362)
                       ........+....  ..   ..+...+++|+.|++++|.+++..+..+ ..+++|++|++++|.+++..+. ....+++
T Consensus       428 ~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~  507 (594)
T 2p1m_B          428 VEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLET  507 (594)
T ss_dssp             HHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGG
T ss_pred             HhhCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCC
Confidence             0001111111111  00   1111226677778887777765544444 5677788888887777544333 3345777


Q ss_pred             cCEEEccCCcccc
Q 044176          326 LESLDLSSNKLHG  338 (362)
Q Consensus       326 L~~L~l~~n~~~~  338 (362)
                      |++|++++|+++.
T Consensus       508 L~~L~l~~~~~~~  520 (594)
T 2p1m_B          508 MRSLWMSSCSVSF  520 (594)
T ss_dssp             SSEEEEESSCCBH
T ss_pred             CCEEeeeCCCCCH
Confidence            8888888777754

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.81  E-value=5.4e-19  Score=164.80  Aligned_cols=134  Identities=23%  Similarity=0.346  Sum_probs=68.1

Q ss_pred             CccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEe
Q 044176           62 STRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLG  141 (362)
Q Consensus        62 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  141 (362)
                      +++.|++++|.+.+ +|..+  .++|++|++++|.++ .+| .  .+ ++|++|++++|.+++ +|. +.   .+|++|+
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip-~--~l-~~L~~L~Ls~N~l~~-ip~-l~---~~L~~L~  126 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP-E--LP-ASLEYLDACDNRLST-LPE-LP---ASLKHLD  126 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC-C--CC-TTCCEEECCSSCCSC-CCC-CC---TTCCEEE
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc-c--cc-CCCCEEEccCCCCCC-cch-hh---cCCCEEE
Confidence            55566666665554 34333  255666666666665 455 1  12 456666666665553 444 22   2556666


Q ss_pred             ccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcc
Q 044176          142 LNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEF  221 (362)
Q Consensus       142 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~  221 (362)
                      +++|.+++ +|.   .+++|+.|++++|.+++ +|.   .+++|++|++++|.+++. +. +  .  ++|+.|++++|.+
T Consensus       127 Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~l-p~-l--~--~~L~~L~Ls~N~L  192 (571)
T 3cvr_A          127 VDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFL-PE-L--P--ESLEALDVSTNLL  192 (571)
T ss_dssp             CCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCC-CC-C--C--TTCCEEECCSSCC
T ss_pred             CCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCc-ch-h--h--CCCCEEECcCCCC
Confidence            66665553 333   34555555555555543 222   345555555555555542 21 1  1  4555555555555


Q ss_pred             c
Q 044176          222 T  222 (362)
Q Consensus       222 ~  222 (362)
                      .
T Consensus       193 ~  193 (571)
T 3cvr_A          193 E  193 (571)
T ss_dssp             S
T ss_pred             C
Confidence            4

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.81  E-value=6.7e-19  Score=155.94  Aligned_cols=195  Identities=15%  Similarity=0.070  Sum_probs=105.0

Q ss_pred             cEEEcCCCcccccccCCcCCCcEEEccCCcCCCC---CCCCCCCccEEEccCcccccCC-cccccCCCCCCE-EEcccCc
Q 044176           22 TYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGT---ILVPPPSTRAFLFSNNKLFGQI-PPSIYSLSSLEY-ISLSHNN   96 (362)
Q Consensus        22 ~~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~---~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~-L~L~~~~   96 (362)
                      +.+++++++++.+|..-.+++++|++++|.|+..   .+.++++|++|++++|.+.+.+ +.+|.+++++++ +.+.+|+
T Consensus        12 ~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~   91 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN   91 (350)
T ss_dssp             TEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred             CEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence            5678888888888776566788888887777642   3445666777777776664433 345666666654 4445566


Q ss_pred             ccccCCC-CcccccccccEEEcccccccCcchhhhhcCCCCccEEeccC-CcccCCCchhhhcC-CCCcEEEccCCCCCC
Q 044176           97 LSGTIPP-CLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNS-NKLRGSFPRYLADC-TGLEVVNVGNNMIGD  173 (362)
Q Consensus        97 ~~~~~~~-~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~  173 (362)
                      ++ .++. .+..+ ++|++|++++|.+....+..+... ..+..+++.+ +.+....+..|..+ ..++.|++++|.+++
T Consensus        92 l~-~l~~~~f~~l-~~L~~L~l~~n~l~~~~~~~~~~~-~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~  168 (350)
T 4ay9_X           92 LL-YINPEAFQNL-PNLQYLLISNTGIKHLPDVHKIHS-LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE  168 (350)
T ss_dssp             CC-EECTTSBCCC-TTCCEEEEEEECCSSCCCCTTCCB-SSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred             cc-ccCchhhhhc-cccccccccccccccCCchhhccc-chhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence            66 4433 33333 566666666666653222232222 3555555544 33443333344443 345566666666643


Q ss_pred             CcchhccCCCCCCeEEccC-CcCCCccccccccccCCcccEEeccCCccc
Q 044176          174 TFPSWLGSLPGLKILVLRS-NRFYGPLCEVNIMLPFEALRIIDLSHNEFT  222 (362)
Q Consensus       174 ~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  222 (362)
                      ..+. .....+|+++++.+ |.+......  ++..+++|++|++++|.++
T Consensus       169 i~~~-~f~~~~L~~l~l~~~n~l~~i~~~--~f~~l~~L~~LdLs~N~l~  215 (350)
T 4ay9_X          169 IHNS-AFNGTQLDELNLSDNNNLEELPND--VFHGASGPVILDISRTRIH  215 (350)
T ss_dssp             ECTT-SSTTEEEEEEECTTCTTCCCCCTT--TTTTEECCSEEECTTSCCC
T ss_pred             CChh-hccccchhHHhhccCCcccCCCHH--HhccCcccchhhcCCCCcC
Confidence            2222 22344555666553 333322222  2345556666666666555

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.81  E-value=3e-19  Score=158.17  Aligned_cols=243  Identities=17%  Similarity=0.102  Sum_probs=169.1

Q ss_pred             cEEEccCCcCCCCCCCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccE-EEccccc
Q 044176           43 TVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTI-LHLNNNY  121 (362)
Q Consensus        43 ~~L~l~~n~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~-L~l~~~~  121 (362)
                      +.++.++++++.....-++++++|++++|.++.+.+.+|.++++|++|+|++|++.+.++...+...+++++ +.+.+|+
T Consensus        12 ~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~   91 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN   91 (350)
T ss_dssp             TEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred             CEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence            567777777775543335789999999999987666789999999999999999865676655443356654 5566678


Q ss_pred             ccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCC-CCCCCcchhccCCC-CCCeEEccCCcCCCcc
Q 044176          122 LQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNN-MIGDTFPSWLGSLP-GLKILVLRSNRFYGPL  199 (362)
Q Consensus       122 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~-~L~~L~l~~n~~~~~~  199 (362)
                      +....|..+. .+++|++|++++|.+....+..+....++..+++.++ .+....+..+..+. .++.|++++|++....
T Consensus        92 l~~l~~~~f~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~  170 (350)
T 4ay9_X           92 LLYINPEAFQ-NLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH  170 (350)
T ss_dssp             CCEECTTSBC-CCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEEC
T ss_pred             ccccCchhhh-hccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCC
Confidence            8744444544 4589999999999988666666667778888888664 55444444555554 6788899998887544


Q ss_pred             ccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhccccc
Q 044176          200 CEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFT  279 (362)
Q Consensus       200 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  279 (362)
                      ...   ....+++++++.+++..+.++...+..                                          +++|+
T Consensus       171 ~~~---f~~~~L~~l~l~~~n~l~~i~~~~f~~------------------------------------------l~~L~  205 (350)
T 4ay9_X          171 NSA---FNGTQLDELNLSDNNNLEELPNDVFHG------------------------------------------ASGPV  205 (350)
T ss_dssp             TTS---STTEEEEEEECTTCTTCCCCCTTTTTT------------------------------------------EECCS
T ss_pred             hhh---ccccchhHHhhccCCcccCCCHHHhcc------------------------------------------Ccccc
Confidence            333   234678888887544333555432222                                          67789


Q ss_pred             EEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCc
Q 044176          280 TIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNK  335 (362)
Q Consensus       280 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~  335 (362)
                      .|++++|+++...+.   .+.+|+.|.+.++.-...+| .+..+++|+.++++++.
T Consensus       206 ~LdLs~N~l~~lp~~---~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~  257 (350)
T 4ay9_X          206 ILDISRTRIHSLPSY---GLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPS  257 (350)
T ss_dssp             EEECTTSCCCCCCSS---SCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHH
T ss_pred             hhhcCCCCcCccChh---hhccchHhhhccCCCcCcCC-CchhCcChhhCcCCCCc
Confidence            999999999854443   35677777776665444565 48889999999998654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.80  E-value=7.2e-19  Score=143.98  Aligned_cols=175  Identities=22%  Similarity=0.248  Sum_probs=99.4

Q ss_pred             cEEEcCCCcccccccCCcCCCcEEEccCCcCCCCCCCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccccC
Q 044176           22 TYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTI  101 (362)
Q Consensus        22 ~~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~  101 (362)
                      +.++++++.++.++....++++.|++++|.++                     ...+..|.++++|++|++++|+++ .+
T Consensus        10 ~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~---------------------~~~~~~~~~l~~L~~L~l~~n~l~-~~   67 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGIPAQTTYLDLETNSLK---------------------SLPNGVFDELTSLTQLYLGGNKLQ-SL   67 (208)
T ss_dssp             TEEECCSSCCSSCCSCCCTTCSEEECCSSCCC---------------------CCCTTTTTTCTTCSEEECCSSCCC-CC
T ss_pred             CEEEecCCCccCCCCCCCCCCcEEEcCCCccC---------------------cCChhhhcccccCcEEECCCCccC-cc
Confidence            45666666666666555555666665555544                     333444555666666666666665 44


Q ss_pred             CCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhccC
Q 044176          102 PPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGS  181 (362)
Q Consensus       102 ~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  181 (362)
                      +...+...++|++|++++|.+.. ++......+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..
T Consensus        68 ~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~  146 (208)
T 2o6s_A           68 PNGVFNKLTSLTYLNLSTNQLQS-LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDR  146 (208)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred             ChhhcCCCCCcCEEECCCCcCCc-cCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhcc
Confidence            43332222456666666666552 33322222356666666666666444445666666666666666665555555666


Q ss_pred             CCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchh
Q 044176          182 LPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRW  228 (362)
Q Consensus       182 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~  228 (362)
                      +++|++|++++|.+.         ..+++|+.|+++.|.+.+.+|..
T Consensus       147 l~~L~~L~l~~N~~~---------~~~~~l~~L~~~~n~~~g~ip~~  184 (208)
T 2o6s_A          147 LTSLQYIWLHDNPWD---------CTCPGIRYLSEWINKHSGVVRNS  184 (208)
T ss_dssp             CTTCCEEECCSCCBC---------CCTTTTHHHHHHHHHCTTTBBCT
T ss_pred             CCCccEEEecCCCee---------cCCCCHHHHHHHHHhCCceeecc
Confidence            667777777666544         23456666666666666665543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.78  E-value=4.6e-18  Score=158.54  Aligned_cols=183  Identities=22%  Similarity=0.307  Sum_probs=151.2

Q ss_pred             CCcEEEcCCCcccccccCCcCCCcEEEccCCcCCCCCCCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccc
Q 044176           20 SLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSG   99 (362)
Q Consensus        20 ~L~~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~   99 (362)
                      +++.|++++|.++.++...+++|+.|++++|.++... ..+++|++|++++|.+++ +|. +.+  +|++|++++|.++ 
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~~ip-~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~-  133 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLP-ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLT-  133 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCSCCC-CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCS-
T ss_pred             CccEEEeCCCCCCccCHhHcCCCCEEECcCCCCcccc-cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCC-
Confidence            8999999999999998877899999999999999655 668999999999999996 666 655  9999999999999 


Q ss_pred             cCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhc
Q 044176          100 TIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWL  179 (362)
Q Consensus       100 ~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~  179 (362)
                      .+|.   .+ ++|+.|++++|.+++ +|.    .+++|++|++++|.+++ +|. +.  ++|+.|++++|.++ .+|. +
T Consensus       134 ~lp~---~l-~~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~  198 (571)
T 3cvr_A          134 MLPE---LP-ALLEYINADNNQLTM-LPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-V  198 (571)
T ss_dssp             CCCC---CC-TTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-C
T ss_pred             CCCC---cC-ccccEEeCCCCccCc-CCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-H
Confidence            5777   33 789999999999984 666    34799999999999986 555 55  89999999999996 4454 4


Q ss_pred             cCCCCC-------CeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchh
Q 044176          180 GSLPGL-------KILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRW  228 (362)
Q Consensus       180 ~~~~~L-------~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~  228 (362)
                      ..  +|       +.|++++|.++.. +...  ..+++|+.|++++|.+.+..|..
T Consensus       199 ~~--~L~~~~~~L~~L~Ls~N~l~~l-p~~l--~~l~~L~~L~L~~N~l~~~~p~~  249 (571)
T 3cvr_A          199 PV--RNHHSEETEIFFRCRENRITHI-PENI--LSLDPTCTIILEDNPLSSRIRES  249 (571)
T ss_dssp             C----------CCEEEECCSSCCCCC-CGGG--GGSCTTEEEECCSSSCCHHHHHH
T ss_pred             HH--hhhcccccceEEecCCCcceec-CHHH--hcCCCCCEEEeeCCcCCCcCHHH
Confidence            43  66       9999999999864 3322  45899999999999998765554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.78  E-value=3.5e-18  Score=139.85  Aligned_cols=162  Identities=22%  Similarity=0.263  Sum_probs=87.4

Q ss_pred             CCCcccccCCccccccCCCCcEEEcCCCcccccccC---CcCCCcEEEccCCcCCCCC---CCCCCCccEEEccCccccc
Q 044176            2 SNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQH---PWKNITVLNLQNNTIQGTI---LVPPPSTRAFLFSNNKLFG   75 (362)
Q Consensus         2 ~~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~---~~~~L~~L~l~~n~~~~~~---~~~~~~L~~L~l~~~~~~~   75 (362)
                      +++.++ .+|....   ++++.|++++|+++.++..   .+++|+.|++++|.+.+..   +..+++|++|++++|.+..
T Consensus        15 ~~~~l~-~~p~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~   90 (208)
T 2o6s_A           15 YSQGRT-SVPTGIP---AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS   90 (208)
T ss_dssp             CSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             cCCCcc-CCCCCCC---CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCc
Confidence            456677 6776653   7899999999999988763   4567777777777665422   1224445555555555444


Q ss_pred             CCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhh
Q 044176           76 QIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYL  155 (362)
Q Consensus        76 ~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  155 (362)
                      ..+..|.++++|++|++++|+++ .++..                        .+.. +++|++|++++|.+++..+..+
T Consensus        91 ~~~~~~~~l~~L~~L~L~~N~l~-~~~~~------------------------~~~~-l~~L~~L~l~~N~l~~~~~~~~  144 (208)
T 2o6s_A           91 LPNGVFDKLTQLKELALNTNQLQ-SLPDG------------------------VFDK-LTQLKDLRLYQNQLKSVPDGVF  144 (208)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCC-CCCTT------------------------TTTT-CTTCCEEECCSSCCSCCCTTTT
T ss_pred             cCHhHhcCccCCCEEEcCCCcCc-ccCHh------------------------Hhcc-CCcCCEEECCCCccceeCHHHh
Confidence            33333444555555555555444 23222                        2222 2445555555555443333334


Q ss_pred             hcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccc
Q 044176          156 ADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLC  200 (362)
Q Consensus       156 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  200 (362)
                      ..+++|+.|++++|.+.       +.+++|+.|++..|.+++..+
T Consensus       145 ~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~ip  182 (208)
T 2o6s_A          145 DRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVR  182 (208)
T ss_dssp             TTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTTBB
T ss_pred             ccCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCceee
Confidence            44555555555555331       234445555555555554444

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.77  E-value=8.1e-18  Score=144.92  Aligned_cols=128  Identities=26%  Similarity=0.356  Sum_probs=66.5

Q ss_pred             ccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCC
Q 044176           81 IYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTG  160 (362)
Q Consensus        81 ~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~  160 (362)
                      +..+++|++|++++|.+. .++ .+..+ ++|++|++++|.+.+ ++. +.. +++|++|++++|.+++ . ..+..+++
T Consensus        42 ~~~l~~L~~L~l~~~~i~-~~~-~~~~l-~~L~~L~L~~n~l~~-~~~-l~~-l~~L~~L~l~~n~l~~-~-~~l~~l~~  113 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIK-SVQ-GIQYL-PNVTKLFLNGNKLTD-IKP-LAN-LKNLGWLFLDENKVKD-L-SSLKDLKK  113 (291)
T ss_dssp             HHHHHTCCEEECTTSCCC-CCT-TGGGC-TTCCEEECCSSCCCC-CGG-GTT-CTTCCEEECCSSCCCC-G-GGGTTCTT
T ss_pred             hhhcCcccEEEccCCCcc-cCh-hHhcC-CCCCEEEccCCccCC-Ccc-ccc-CCCCCEEECCCCcCCC-C-hhhccCCC
Confidence            345666677777776665 443 24444 566666666666653 222 332 3566666666666553 2 23555555


Q ss_pred             CcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCccc
Q 044176          161 LEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFT  222 (362)
Q Consensus       161 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  222 (362)
                      |+.|++++|.+.+.  ..+..+++|+.|++++|.+.+.    ..+..+++|++|++++|.+.
T Consensus       114 L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~----~~l~~l~~L~~L~L~~N~l~  169 (291)
T 1h6t_A          114 LKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI----TVLSRLTKLDTLSLEDNQIS  169 (291)
T ss_dssp             CCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC----GGGGGCTTCSEEECCSSCCC
T ss_pred             CCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc----hhhccCCCCCEEEccCCccc
Confidence            66666655555432  2344555555555555554432    12234444555555444444

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.77  E-value=1.1e-17  Score=144.15  Aligned_cols=182  Identities=23%  Similarity=0.349  Sum_probs=100.8

Q ss_pred             EcCCCccccccc-CCcCCCcEEEccCCcCCCCC-CCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCC
Q 044176           25 DISNNFLTQIEQ-HPWKNITVLNLQNNTIQGTI-LVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIP  102 (362)
Q Consensus        25 ~ls~~~i~~~~~-~~~~~L~~L~l~~n~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~  102 (362)
                      .+..+.++++.. ..+++|+.|++++|.+.+.. +..+++|++|++++|.+.+..+  +.++++|++|++++|.++ .++
T Consensus        30 ~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~  106 (291)
T 1h6t_A           30 NLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLS  106 (291)
T ss_dssp             HTTCSCTTSEECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CGG
T ss_pred             HhcCCCcccccchhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC-CCh
Confidence            344444444332 34455555555555554322 2225556666666666554322  566666666666666665 333


Q ss_pred             CCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhccCC
Q 044176          103 PCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSL  182 (362)
Q Consensus       103 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~  182 (362)
                      . +..+ ++|++|++++|.+.+ + ..+.. +++|++|++++|.+++.  ..+..+++|+.|++++|.+.+..+  +..+
T Consensus       107 ~-l~~l-~~L~~L~L~~n~i~~-~-~~l~~-l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l  177 (291)
T 1h6t_A          107 S-LKDL-KKLKSLSLEHNGISD-I-NGLVH-LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGL  177 (291)
T ss_dssp             G-GTTC-TTCCEEECTTSCCCC-C-GGGGG-CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTC
T ss_pred             h-hccC-CCCCEEECCCCcCCC-C-hhhcC-CCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCC
Confidence            2 4444 466666666666653 2 23333 35666666666666533  456666666666666666654433  5666


Q ss_pred             CCCCeEEccCCcCCCccccccccccCCcccEEeccCCccc
Q 044176          183 PGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFT  222 (362)
Q Consensus       183 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  222 (362)
                      ++|+.|++++|.+.+..    .+..+++|+.|++++|.+.
T Consensus       178 ~~L~~L~L~~N~i~~l~----~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          178 TKLQNLYLSKNHISDLR----ALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             TTCCEEECCSSCCCBCG----GGTTCTTCSEEEEEEEEEE
T ss_pred             CccCEEECCCCcCCCCh----hhccCCCCCEEECcCCccc
Confidence            66666666666665421    2355666666666666665

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.77  E-value=1.5e-18  Score=163.43  Aligned_cols=188  Identities=22%  Similarity=0.325  Sum_probs=132.9

Q ss_pred             CCcEEEcCCCccccccc-CCcCCCcEEEccCCcCCCCC-CCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcc
Q 044176           20 SLTYLDISNNFLTQIEQ-HPWKNITVLNLQNNTIQGTI-LVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNL   97 (362)
Q Consensus        20 ~L~~L~ls~~~i~~~~~-~~~~~L~~L~l~~n~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~   97 (362)
                      .+..+.++.+.++++.. ..+++|+.|++++|.+.... +..+++|+.|++++|.+.+..+  +..+++|+.|+|++|.+
T Consensus        22 ~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l   99 (605)
T 1m9s_A           22 ETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKI   99 (605)
T ss_dssp             HHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred             HHHHHhccCCCcccccchhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCC
Confidence            34445566666666554 45677777777777766532 3337778888888887775433  77888888888888888


Q ss_pred             cccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcch
Q 044176           98 SGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPS  177 (362)
Q Consensus        98 ~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  177 (362)
                      + .++ .+..+ ++|++|++++|.+.. ++ .+.. +++|+.|++++|.+.+.  ..+..+++|+.|++++|.+.+..+ 
T Consensus       100 ~-~l~-~l~~l-~~L~~L~Ls~N~l~~-l~-~l~~-l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-  170 (605)
T 1m9s_A          100 K-DLS-SLKDL-KKLKSLSLEHNGISD-IN-GLVH-LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-  170 (605)
T ss_dssp             C-CCT-TSTTC-TTCCEEECTTSCCCC-CG-GGGG-CTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-
T ss_pred             C-CCh-hhccC-CCCCEEEecCCCCCC-Cc-cccC-CCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-
Confidence            7 444 45555 678888888888773 33 3444 37888888888888744  567788888888888888866555 


Q ss_pred             hccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccC
Q 044176          178 WLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTG  223 (362)
Q Consensus       178 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~  223 (362)
                       +..+++|+.|+|++|.+.+.    ..+..+++|+.|++++|.+.+
T Consensus       171 -l~~l~~L~~L~Ls~N~i~~l----~~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          171 -LAGLTKLQNLYLSKNHISDL----RALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             -GTTCTTCCEEECCSSCCCBC----GGGTTCTTCSEEECCSEEEEC
T ss_pred             -hccCCCCCEEECcCCCCCCC----hHHccCCCCCEEEccCCcCcC
Confidence             77788888888888877653    134677888888888888764

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.76  E-value=1.4e-17  Score=137.39  Aligned_cols=131  Identities=21%  Similarity=0.285  Sum_probs=71.4

Q ss_pred             ccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEec
Q 044176           63 TRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGL  142 (362)
Q Consensus        63 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  142 (362)
                      ++.|++++|.+....+..|..+++|++|++++|++++..|..+..+ ++|++|++++|.+. .+|...+..+++|++|++
T Consensus        34 l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l-~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L  111 (220)
T 2v9t_B           34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGL-RSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLL  111 (220)
T ss_dssp             CCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTC-SSCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred             CCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCC-cCCCEEECCCCcCC-ccCHhHccCCCCCCEEEC
Confidence            3344444444443444455666666666666666653334444444 45666666666555 334333333356666666


Q ss_pred             cCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcC
Q 044176          143 NSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRF  195 (362)
Q Consensus       143 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~  195 (362)
                      ++|.+++..+..|..+++|+.|++++|.+++..+..+..+++|++|++++|++
T Consensus       112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B          112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            66666655555566666666666666666555444555555566666555554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.75  E-value=7.1e-18  Score=149.95  Aligned_cols=172  Identities=22%  Similarity=0.241  Sum_probs=102.7

Q ss_pred             cEEEcCCCcccccccCCcCCCcEEEccCCcCCCCC---CC-CCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcc
Q 044176           22 TYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTI---LV-PPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNL   97 (362)
Q Consensus        22 ~~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~~---~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~   97 (362)
                      +.++++++.++.+|....+.++.|++++|.+++..   +. .+++|+.|++++|.+....+..|.++++|++|+|++|++
T Consensus        21 ~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l  100 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL  100 (361)
T ss_dssp             TEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcC
Confidence            46777877777777665666777777777766432   22 466677777777776666556666677777777777776


Q ss_pred             cccCCCC-cccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhh---hcCCCCcEEEccCCCCCC
Q 044176           98 SGTIPPC-LGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYL---ADCTGLEVVNVGNNMIGD  173 (362)
Q Consensus        98 ~~~~~~~-l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~l~~L~~L~l~~~~~~~  173 (362)
                      + .++.. +..+ ++|++|++++|.+....|..+... ++|++|++++|.++...+..+   ..+++|+.|++++|.+..
T Consensus       101 ~-~~~~~~~~~l-~~L~~L~L~~N~i~~~~~~~~~~l-~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~  177 (361)
T 2xot_A          101 H-TLDEFLFSDL-QALEVLLLYNNHIVVVDRNAFEDM-AQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK  177 (361)
T ss_dssp             C-EECTTTTTTC-TTCCEEECCSSCCCEECTTTTTTC-TTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred             C-cCCHHHhCCC-cCCCEEECCCCcccEECHHHhCCc-ccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence            6 34333 3333 566666666666664334444433 666666666666664333333   345666666666666654


Q ss_pred             CcchhccCCCC--CCeEEccCCcCC
Q 044176          174 TFPSWLGSLPG--LKILVLRSNRFY  196 (362)
Q Consensus       174 ~~~~~~~~~~~--L~~L~l~~n~~~  196 (362)
                      ..+..+..++.  ++.|++++|++.
T Consensus       178 l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          178 LPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             cCHHHhhhccHhhcceEEecCCCcc
Confidence            44444555544  255666655543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.75  E-value=2.2e-17  Score=136.21  Aligned_cols=149  Identities=26%  Similarity=0.273  Sum_probs=129.0

Q ss_pred             cEEEcCCCcccccccCCcCCCcEEEccCCcCCCC---CCCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCccc
Q 044176           22 TYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGT---ILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLS   98 (362)
Q Consensus        22 ~~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~   98 (362)
                      +.++++++.++.+|....++++.|++++|.+.+.   .+..+++|+.|++++|.+....|..|.++++|++|++++|+++
T Consensus        14 ~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~   93 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT   93 (220)
T ss_dssp             TEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC
T ss_pred             CEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC
Confidence            5789999999999887678899999999988854   3555899999999999999888999999999999999999999


Q ss_pred             ccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCC
Q 044176           99 GTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIG  172 (362)
Q Consensus        99 ~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  172 (362)
                       .+|...+...++|++|++++|.+....|..+... ++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus        94 -~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           94 -ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDL-HNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             -CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             -ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCC-CCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence             7777665544799999999999986666666654 89999999999999777778999999999999999874

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.74  E-value=4.1e-17  Score=134.51  Aligned_cols=114  Identities=20%  Similarity=0.246  Sum_probs=56.8

Q ss_pred             cccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCC
Q 044176           80 SIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCT  159 (362)
Q Consensus        80 ~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~  159 (362)
                      .|.++++|++|++++|.+++..+..+..+ ++|++|++++|.+.+..+..+.. +++|++|++++|.+++..+..+..++
T Consensus        52 ~~~~l~~L~~L~L~~N~i~~i~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~  129 (220)
T 2v70_A           52 IFKKLPQLRKINFSNNKITDIEEGAFEGA-SGVNEILLTSNRLENVQHKMFKG-LESLKTLMLRSNRITCVGNDSFIGLS  129 (220)
T ss_dssp             CGGGCTTCCEEECCSSCCCEECTTTTTTC-TTCCEEECCSSCCCCCCGGGGTT-CSSCCEEECTTSCCCCBCTTSSTTCT
T ss_pred             hhccCCCCCEEECCCCcCCEECHHHhCCC-CCCCEEECCCCccCccCHhHhcC-CcCCCEEECCCCcCCeECHhHcCCCc
Confidence            35556666666666666552222233333 45555555555554332333332 25555555555555544444555555


Q ss_pred             CCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcC
Q 044176          160 GLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRF  195 (362)
Q Consensus       160 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~  195 (362)
                      +|+.|++++|.+++..+..+..+++|++|++++|++
T Consensus       130 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A          130 SVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             TCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred             cCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence            555555555555444444454555555555554444

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.74  E-value=7.4e-17  Score=133.87  Aligned_cols=134  Identities=25%  Similarity=0.285  Sum_probs=81.4

Q ss_pred             CCccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEE
Q 044176           61 PSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSL  140 (362)
Q Consensus        61 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  140 (362)
                      ++|++|++++|.+.+..+..|.++++|++|++++|+++ .++...+...++|++|++++|.++. ++......+++|++|
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~~l~~L~~L  117 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLTV-LPSAVFDRLVHLKEL  117 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEE
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEECCCCcCCc-cChhHhCcchhhCeE
Confidence            34444444455555455666667777777777777776 5554433322567777777776663 333332234667777


Q ss_pred             eccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCC
Q 044176          141 GLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYG  197 (362)
Q Consensus       141 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~  197 (362)
                      ++++|.++ .+|..+..+++|+.|++++|.+....+..+..+++|+.|++++|++..
T Consensus       118 ~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          118 FMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             ECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             eccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence            77777766 556666667777777777776655555556666666677766666553

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.74  E-value=3.1e-17  Score=135.24  Aligned_cols=149  Identities=25%  Similarity=0.246  Sum_probs=125.3

Q ss_pred             cEEEcCCCcccccccCCcCCCcEEEccCCcCCCCC----CCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcc
Q 044176           22 TYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTI----LVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNL   97 (362)
Q Consensus        22 ~~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~   97 (362)
                      +.++++++.++.+|....+.++.|++++|.+++..    +..+++|++|++++|.+.+..+..|.++++|++|++++|.+
T Consensus        14 ~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l   93 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL   93 (220)
T ss_dssp             TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCcc
Confidence            57899999999988766777899999999888653    34589999999999999988778899999999999999999


Q ss_pred             cccCCCC-cccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCC
Q 044176           98 SGTIPPC-LGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGD  173 (362)
Q Consensus        98 ~~~~~~~-l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  173 (362)
                      + .++.. +..+ ++|++|++++|.+.+..|..+... ++|++|++++|.+++..|..+..+++|+.|++++|.+..
T Consensus        94 ~-~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A           94 E-NVQHKMFKGL-ESLKTLMLRSNRITCVGNDSFIGL-SSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             C-CCCGGGGTTC-SSCCEEECTTSCCCCBCTTSSTTC-TTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred             C-ccCHhHhcCC-cCCCEEECCCCcCCeECHhHcCCC-ccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence            8 55554 5455 789999999999986667766654 899999999999997778899999999999999998743

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=3.6e-17  Score=154.12  Aligned_cols=128  Identities=24%  Similarity=0.337  Sum_probs=78.6

Q ss_pred             ccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCC
Q 044176           81 IYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTG  160 (362)
Q Consensus        81 ~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~  160 (362)
                      +..+++|+.|++++|.+. .++ .+..+ ++|+.|++++|.+.+. +. +.. +++|++|++++|.+.+ + ..+..+++
T Consensus        39 ~~~L~~L~~L~l~~n~i~-~l~-~l~~l-~~L~~L~Ls~N~l~~~-~~-l~~-l~~L~~L~Ls~N~l~~-l-~~l~~l~~  110 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIK-SVQ-GIQYL-PNVTKLFLNGNKLTDI-KP-LTN-LKNLGWLFLDENKIKD-L-SSLKDLKK  110 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCC-CCT-TGGGC-TTCCEEECTTSCCCCC-GG-GGG-CTTCCEEECCSSCCCC-C-TTSTTCTT
T ss_pred             hhcCCCCCEEECcCCCCC-CCh-HHccC-CCCCEEEeeCCCCCCC-hh-hcc-CCCCCEEECcCCCCCC-C-hhhccCCC
Confidence            456777888888888776 554 45555 6777777777777643 33 333 3677777777777663 2 25666666


Q ss_pred             CcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCccc
Q 044176          161 LEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFT  222 (362)
Q Consensus       161 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  222 (362)
                      |+.|++++|.+.+.  ..+..+++|+.|+|++|.+.+.    ..+..+++|+.|++++|.+.
T Consensus       111 L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l----~~l~~l~~L~~L~Ls~N~l~  166 (605)
T 1m9s_A          111 LKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI----TVLSRLTKLDTLSLEDNQIS  166 (605)
T ss_dssp             CCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC----GGGGSCTTCSEEECCSSCCC
T ss_pred             CCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc----hhhcccCCCCEEECcCCcCC
Confidence            77777766666442  3355666666666666665542    12345555666666555554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.73  E-value=1.3e-17  Score=135.13  Aligned_cols=160  Identities=18%  Similarity=0.198  Sum_probs=123.7

Q ss_pred             cccccccCCcCCCcEEEccCCcCCCCC-CCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccc
Q 044176           30 FLTQIEQHPWKNITVLNLQNNTIQGTI-LVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNF  108 (362)
Q Consensus        30 ~i~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~  108 (362)
                      ....+....+++|+.|++++|.+.+.. +..+++|++|++++|.+.  .+..+..+++|++|++++|.+++..+..+..+
T Consensus        34 ~~~~i~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l  111 (197)
T 4ezg_A           34 STANITEAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGL  111 (197)
T ss_dssp             TTCCCBHHHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTC
T ss_pred             ccccCChhhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCC
Confidence            344444456777888888888777522 334788888888888665  33578889999999999999986677777777


Q ss_pred             cccccEEEcccccccCcchhhhhcCCCCccEEeccCCc-ccCCCchhhhcCCCCcEEEccCCCCCCCcchhccCCCCCCe
Q 044176          109 STQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNK-LRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKI  187 (362)
Q Consensus       109 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  187 (362)
                       ++|++|++++|.+.+..+..+... ++|++|++++|. ++ .++ .+..+++|+.|++++|.+.+..  .+..+++|++
T Consensus       112 -~~L~~L~Ls~n~i~~~~~~~l~~l-~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~  185 (197)
T 4ezg_A          112 -TSLTLLDISHSAHDDSILTKINTL-PKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQ  185 (197)
T ss_dssp             -TTCCEEECCSSBCBGGGHHHHTTC-SSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCE
T ss_pred             -CCCCEEEecCCccCcHhHHHHhhC-CCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCE
Confidence             789999999999986667777654 899999999998 65 444 6889999999999999986643  6788999999


Q ss_pred             EEccCCcCCC
Q 044176          188 LVLRSNRFYG  197 (362)
Q Consensus       188 L~l~~n~~~~  197 (362)
                      |++++|++.+
T Consensus       186 L~l~~N~i~~  195 (197)
T 4ezg_A          186 LYAFSQTIGG  195 (197)
T ss_dssp             EEECBC----
T ss_pred             EEeeCcccCC
Confidence            9999998753

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.73  E-value=3.9e-17  Score=132.35  Aligned_cols=153  Identities=12%  Similarity=0.104  Sum_probs=124.6

Q ss_pred             CCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCc
Q 044176           58 VPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDL  137 (362)
Q Consensus        58 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L  137 (362)
                      ..+++|+.|++++|.+. .+| .+..+++|++|++++|.++ .+ ..+..+ ++|++|++++|.+.+..+..+... ++|
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~-~~l~~l-~~L~~L~l~~n~l~~~~~~~l~~l-~~L  114 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NY-NPISGL-SNLERLRIMGKDVTSDKIPNLSGL-TSL  114 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CC-GGGTTC-TTCCEEEEECTTCBGGGSCCCTTC-TTC
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cc-hhhhcC-CCCCEEEeECCccCcccChhhcCC-CCC
Confidence            34789999999999998 445 6889999999999999776 33 356666 789999999999986567776654 899


Q ss_pred             cEEeccCCcccCCCchhhhcCCCCcEEEccCCC-CCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEec
Q 044176          138 RSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNM-IGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDL  216 (362)
Q Consensus       138 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l  216 (362)
                      ++|++++|.+++..+..+..+++|+.|++++|. +.+. + .+..+++|++|++++|.+.+..    .+..+++|++|++
T Consensus       115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L~l~~n~i~~~~----~l~~l~~L~~L~l  188 (197)
T 4ezg_A          115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M-PLKTLPELKSLNIQFDGVHDYR----GIEDFPKLNQLYA  188 (197)
T ss_dssp             CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEEECTTBCCCCCT----TGGGCSSCCEEEE
T ss_pred             CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-H-hhcCCCCCCEEECCCCCCcChH----HhccCCCCCEEEe
Confidence            999999999987778889999999999999998 6543 4 5888999999999999987633    3477899999999


Q ss_pred             cCCccc
Q 044176          217 SHNEFT  222 (362)
Q Consensus       217 ~~n~~~  222 (362)
                      ++|.+.
T Consensus       189 ~~N~i~  194 (197)
T 4ezg_A          189 FSQTIG  194 (197)
T ss_dssp             CBC---
T ss_pred             eCcccC
Confidence            999876

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.73  E-value=1e-16  Score=132.98  Aligned_cols=150  Identities=19%  Similarity=0.163  Sum_probs=129.3

Q ss_pred             CcEEEcCCCcccccccCCcCCCcEEEccCCcCCCCC---CCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcc
Q 044176           21 LTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTI---LVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNL   97 (362)
Q Consensus        21 L~~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~   97 (362)
                      -+.+++++++++.++....++|+.|++++|.+.+..   +..+++|++|++++|.+....+..|..+++|++|++++|++
T Consensus        21 ~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l  100 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL  100 (229)
T ss_dssp             TTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcC
Confidence            567999999999999887899999999999998754   45589999999999999877777789999999999999999


Q ss_pred             cccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCC
Q 044176           98 SGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGD  173 (362)
Q Consensus        98 ~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  173 (362)
                      + .++...+...++|++|++++|.+. .+|..+... ++|++|++++|.+++..+..+..+++|+.|++.+|.+..
T Consensus       101 ~-~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          101 T-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERL-THLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             C-CCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             C-ccChhHhCcchhhCeEeccCCccc-ccCcccccC-CCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence            9 666554433379999999999998 788888655 899999999999997666788999999999999998754

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.72  E-value=2.4e-17  Score=139.78  Aligned_cols=124  Identities=19%  Similarity=0.301  Sum_probs=57.8

Q ss_pred             CCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcE
Q 044176           84 LSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEV  163 (362)
Q Consensus        84 l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  163 (362)
                      +.++..++++++.++ .++ .+..+ ++|++|++++|.+. .++ .+.. +++|++|++++|.+++..+  +..+++|+.
T Consensus        18 l~~l~~l~l~~~~i~-~~~-~~~~l-~~L~~L~l~~n~i~-~l~-~l~~-l~~L~~L~L~~N~i~~~~~--l~~l~~L~~   89 (263)
T 1xeu_A           18 LANAVKQNLGKQSVT-DLV-SQKEL-SGVQNFNGDNSNIQ-SLA-GMQF-FTNLKELHLSHNQISDLSP--LKDLTKLEE   89 (263)
T ss_dssp             HHHHHHHHHTCSCTT-SEE-CHHHH-TTCSEEECTTSCCC-CCT-TGGG-CTTCCEEECCSSCCCCCGG--GTTCSSCCE
T ss_pred             HHHHHHHHhcCCCcc-ccc-chhhc-CcCcEEECcCCCcc-cch-HHhh-CCCCCEEECCCCccCCChh--hccCCCCCE
Confidence            344445555555555 333 23333 45555666555554 333 2332 2555555555555553222  555555555


Q ss_pred             EEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCccc
Q 044176          164 VNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFT  222 (362)
Q Consensus       164 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  222 (362)
                      |++++|.+.+. +. +.. ++|++|++++|.+.+..    .+..+++|++|++++|.+.
T Consensus        90 L~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~~----~l~~l~~L~~L~Ls~N~i~  141 (263)
T 1xeu_A           90 LSVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDTD----SLIHLKNLEILSIRNNKLK  141 (263)
T ss_dssp             EECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBSG----GGTTCTTCCEEECTTSCCC
T ss_pred             EECCCCccCCc-Cc-ccc-CcccEEEccCCccCCCh----hhcCcccccEEECCCCcCC
Confidence            55555555332 11 111 45555555555444321    1234445555555554444

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.72  E-value=4.8e-17  Score=144.59  Aligned_cols=179  Identities=21%  Similarity=0.142  Sum_probs=143.3

Q ss_pred             CcEEEccCCcCCCCCCCCCCCccEEEccCcccccCCccccc-CCCCCCEEEcccCcccccCCCCcccccccccEEEcccc
Q 044176           42 ITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSIY-SLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNN  120 (362)
Q Consensus        42 L~~L~l~~n~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~  120 (362)
                      -+.++++++.++.....-.+.++.|++++|.+....+..|. ++++|++|++++|++++..+..+..+ ++|++|++++|
T Consensus        20 ~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l-~~L~~L~Ls~N   98 (361)
T 2xot_A           20 SNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPV-PNLRYLDLSSN   98 (361)
T ss_dssp             TTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTC-TTCCEEECCSS
T ss_pred             CCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCC-CCCCEEECCCC
Confidence            46889999988875544567799999999999988777787 89999999999999994334456666 79999999999


Q ss_pred             cccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhc---cCCCCCCeEEccCCcCCC
Q 044176          121 YLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWL---GSLPGLKILVLRSNRFYG  197 (362)
Q Consensus       121 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~n~~~~  197 (362)
                      ++....+..|. .+++|++|++++|.++...+..|..+++|+.|++++|.+....+..+   ..+++|+.|++++|.+..
T Consensus        99 ~l~~~~~~~~~-~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~  177 (361)
T 2xot_A           99 HLHTLDEFLFS-DLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK  177 (361)
T ss_dssp             CCCEECTTTTT-TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred             cCCcCCHHHhC-CCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence            99844344454 45899999999999997778899999999999999999977655555   578999999999999986


Q ss_pred             ccccccccccCCc--ccEEeccCCcccCC
Q 044176          198 PLCEVNIMLPFEA--LRIIDLSHNEFTGF  224 (362)
Q Consensus       198 ~~~~~~~~~~~~~--L~~L~l~~n~~~~~  224 (362)
                      .....  +..++.  ++.|++.+|.+.-.
T Consensus       178 l~~~~--~~~l~~~~l~~l~l~~N~~~C~  204 (361)
T 2xot_A          178 LPLTD--LQKLPAWVKNGLYLHNNPLECD  204 (361)
T ss_dssp             CCHHH--HHHSCHHHHTTEECCSSCEECC
T ss_pred             cCHHH--hhhccHhhcceEEecCCCccCC
Confidence            54433  245565  48899999998743

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.71  E-value=3e-17  Score=139.13  Aligned_cols=167  Identities=21%  Similarity=0.263  Sum_probs=115.4

Q ss_pred             CCCcEEEcCCCccccccc-CCcCCCcEEEccCCcCCCCC-CCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCc
Q 044176           19 KSLTYLDISNNFLTQIEQ-HPWKNITVLNLQNNTIQGTI-LVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNN   96 (362)
Q Consensus        19 ~~L~~L~ls~~~i~~~~~-~~~~~L~~L~l~~n~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~   96 (362)
                      +++..++++++.+++++. ..+++|+.|++++|.+.... +..+++|++|++++|.+.+..+  +.++++|++|++++|+
T Consensus        19 ~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~   96 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNR   96 (263)
T ss_dssp             HHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSC
T ss_pred             HHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCc
Confidence            556677788888777764 46778888888888776533 2336777778887777775433  7778888888888888


Q ss_pred             ccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcc
Q 044176           97 LSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFP  176 (362)
Q Consensus        97 ~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  176 (362)
                      ++ .++....   ++|++|++++|.+.+ ++ .+.. +++|++|++++|.+++. + .+..+++|+.|++++|.+.+.  
T Consensus        97 l~-~l~~~~~---~~L~~L~L~~N~l~~-~~-~l~~-l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--  165 (263)
T 1xeu_A           97 LK-NLNGIPS---ACLSRLFLDNNELRD-TD-SLIH-LKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--  165 (263)
T ss_dssp             CS-CCTTCCC---SSCCEEECCSSCCSB-SG-GGTT-CTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--
T ss_pred             cC-CcCcccc---CcccEEEccCCccCC-Ch-hhcC-cccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--
Confidence            87 4554332   578888888887763 33 3443 37778888887777743 3 567777777777777777654  


Q ss_pred             hhccCCCCCCeEEccCCcCCCc
Q 044176          177 SWLGSLPGLKILVLRSNRFYGP  198 (362)
Q Consensus       177 ~~~~~~~~L~~L~l~~n~~~~~  198 (362)
                      ..+..+++|+.|++++|++...
T Consensus       166 ~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          166 GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             TTSTTCCCCCEEEEEEEEEECC
T ss_pred             HHhccCCCCCEEeCCCCcccCC
Confidence            5566777777777777776543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.67  E-value=1.7e-17  Score=145.57  Aligned_cols=280  Identities=17%  Similarity=0.176  Sum_probs=168.7

Q ss_pred             CCCCcEEEcCCCc----ccccccCCcCCCcEEEccCCcCC--CCCCCCCCCccEEEccCcccccCCcccccC--------
Q 044176           18 WKSLTYLDISNNF----LTQIEQHPWKNITVLNLQNNTIQ--GTILVPPPSTRAFLFSNNKLFGQIPPSIYS--------   83 (362)
Q Consensus        18 ~~~L~~L~ls~~~----i~~~~~~~~~~L~~L~l~~n~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--------   83 (362)
                      ++++++|.++++-    +..+. ..+++|+.||+++|.+.  ......++.++.+.+..+.+   .+.+|.+        
T Consensus        24 ~~~l~~L~l~g~i~~~~~~~l~-~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I---~~~aF~~~~~~~~~g   99 (329)
T 3sb4_A           24 ANSITHLTLTGKLNAEDFRHLR-DEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFV---PAYAFSNVVNGVTKG   99 (329)
T ss_dssp             HHHCSEEEEEEEECHHHHHHHH-HSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEE---CTTTTEEEETTEEEE
T ss_pred             hCceeEEEEeccccHHHHHHHH-HhhccCeEEecCcceeEEecCcccccccccccccccccc---CHHHhcccccccccc
Confidence            3678888887641    11111 12677888888888877  22222234445555555543   3356677        


Q ss_pred             CCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcc----cCCCchhhhcCC
Q 044176           84 LSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKL----RGSFPRYLADCT  159 (362)
Q Consensus        84 l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~----~~~~~~~~~~l~  159 (362)
                      +++|+++++.+ .++ .++...+...++|+.+++.++.+....+.+|.. +..+.++.......    ......+|..+.
T Consensus       100 ~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~-~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~  176 (329)
T 3sb4_A          100 KQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALAD-SVTAIFIPLGSSDAYRFKNRWEHFAFIEGE  176 (329)
T ss_dssp             CTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCT-TTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred             cCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcC-CCceEEecCcchhhhhcccccccccccccc
Confidence            88888888887 776 666655555467888888888776333444443 34566655544221    111223444555


Q ss_pred             CCc-EEEccCCCCCCCcchhc----cCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhh
Q 044176          160 GLE-VVNVGNNMIGDTFPSWL----GSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLE  234 (362)
Q Consensus       160 ~L~-~L~l~~~~~~~~~~~~~----~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~  234 (362)
                      .|+ .+.+....   ..+..+    ....+++.+.+.++-... .... ....+++|+.+++.+|.+. .++...|..  
T Consensus       177 ~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~-~~~~-l~~~~~~L~~l~L~~n~i~-~I~~~aF~~--  248 (329)
T 3sb4_A          177 PLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNA-DFKL-IRDYMPNLVSLDISKTNAT-TIPDFTFAQ--  248 (329)
T ss_dssp             CCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHH-HHHH-HHHHCTTCCEEECTTBCCC-EECTTTTTT--
T ss_pred             ccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHH-HHHH-HHHhcCCCeEEECCCCCcc-eecHhhhhC--
Confidence            555 44443321   122111    123455555555431110 0000 0123677888888877776 444333333  


Q ss_pred             hhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCc-EEEccCCcCc
Q 044176          235 TMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLI-VLNLSHNGLT  313 (362)
Q Consensus       235 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~-~L~l~~n~i~  313 (362)
                                                              +++|+.+++.+| ++...+..|.++++|+ .+++.+ .++
T Consensus       249 ----------------------------------------~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~  286 (329)
T 3sb4_A          249 ----------------------------------------KKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT  286 (329)
T ss_dssp             ----------------------------------------CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC
T ss_pred             ----------------------------------------CCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce
Confidence                                                    566778888877 6656677788888998 999987 777


Q ss_pred             cCchhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhccC
Q 044176          314 GSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFA  354 (362)
Q Consensus       314 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~  354 (362)
                      .+.+.+|.+|++|+.+++++|.++.+.+..|.++++|+.+.
T Consensus       287 ~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          287 AIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             EEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            67778899999999999988888877777888888887663

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.65  E-value=5e-17  Score=156.82  Aligned_cols=163  Identities=24%  Similarity=0.270  Sum_probs=78.7

Q ss_pred             CCCcEEEcCCCcccccccCCcCCCcEEEccCCcCCCCCCCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCccc
Q 044176           19 KSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLS   98 (362)
Q Consensus        19 ~~L~~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~   98 (362)
                      +.++.|++.++.+...+..   .++.++|+.+.+.           .+++..|.+. ..+..+..++.|++|+|++|.+.
T Consensus       173 ~~~~~l~L~~n~~~~~~~~---~l~~l~Ls~~~i~-----------~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~  237 (727)
T 4b8c_D          173 PLTPKIELFANGKDEANQA---LLQHKKLSQYSID-----------EDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF  237 (727)
T ss_dssp             ----------------------------------------------------------------CCCCCCEEECTTSCCS
T ss_pred             CccceEEeeCCCCCcchhh---HhhcCccCccccc-----------Ccccccccee-cChhhhccCCCCcEEECCCCCCC
Confidence            4456666666665554332   2344444444322           2333344444 45566777777777777777777


Q ss_pred             ccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchh
Q 044176           99 GTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSW  178 (362)
Q Consensus        99 ~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  178 (362)
                       .+|..++.+ ++|++|++++|.+. .+|..+..+ ++|++|++++|.++ .+|..++.+++|+.|++++|.+. .+|..
T Consensus       238 -~l~~~~~~l-~~L~~L~Ls~N~l~-~lp~~~~~l-~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~  311 (727)
T 4b8c_D          238 -NISANIFKY-DFLTRLYLNGNSLT-ELPAEIKNL-SNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWE  311 (727)
T ss_dssp             -CCCGGGGGC-CSCSCCBCTTSCCS-CCCGGGGGG-TTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSS
T ss_pred             -CCChhhcCC-CCCCEEEeeCCcCc-ccChhhhCC-CCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChh
Confidence             677766665 57777777777776 666666544 67777777777776 55666777777777777777764 44555


Q ss_pred             ccCCCCCCeEEccCCcCCCccccc
Q 044176          179 LGSLPGLKILVLRSNRFYGPLCEV  202 (362)
Q Consensus       179 ~~~~~~L~~L~l~~n~~~~~~~~~  202 (362)
                      ++.+++|+.|+|++|.+.+..+..
T Consensus       312 ~~~l~~L~~L~L~~N~l~~~~p~~  335 (727)
T 4b8c_D          312 FGNLCNLQFLGVEGNPLEKQFLKI  335 (727)
T ss_dssp             TTSCTTCCCEECTTSCCCSHHHHH
T ss_pred             hhcCCCccEEeCCCCccCCCChHH
Confidence            666777777777777666544433

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.64  E-value=2.2e-18  Score=161.40  Aligned_cols=208  Identities=18%  Similarity=0.134  Sum_probs=131.1

Q ss_pred             cCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCC
Q 044176           82 YSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGL  161 (362)
Q Consensus        82 ~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L  161 (362)
                      ..+++|+.|++++|+++ .+|..++.+ ++|+.|++++|......|.....            +...+..|..++.+++|
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l-~~L~~L~l~~n~~l~~l~~ll~~------------~~~~~~~~~~l~~l~~L  411 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESC-KELQELEPENKWCLLTIILLMRA------------LDPLLYEKETLQYFSTL  411 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHH-HHHHHHCTTCHHHHHHHHHHHHH------------HCTGGGHHHHHHHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHH-HHHHHhccccchhhhhHHHHHHh------------cccccCCHHHHHHHHhc
Confidence            45677788888888887 777777776 57777777655311011111000            00122334444445555


Q ss_pred             cEEE-ccCCCCCCCcc-----hhcc--CCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhh
Q 044176          162 EVVN-VGNNMIGDTFP-----SWLG--SLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSL  233 (362)
Q Consensus       162 ~~L~-l~~~~~~~~~~-----~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~  233 (362)
                      +.|+ ++.+.+.....     ..+.  ....|+.|++++|.+++. +.   +..+++|+.|++++|.+. .+|..+ .  
T Consensus       412 ~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~l-p~---~~~l~~L~~L~Ls~N~l~-~lp~~~-~--  483 (567)
T 1dce_A          412 KAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL-CH---LEQLLLVTHLDLSHNRLR-ALPPAL-A--  483 (567)
T ss_dssp             HHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSC-CC---GGGGTTCCEEECCSSCCC-CCCGGG-G--
T ss_pred             ccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCC-cC---ccccccCcEeecCccccc-ccchhh-h--
Confidence            5554 23222110000     0000  012477888888887763 32   467788888888888887 555431 1  


Q ss_pred             hhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCc
Q 044176          234 ETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLT  313 (362)
Q Consensus       234 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~  313 (362)
                                                              .+++|+.|++++|.+++ +| .++.+++|+.|+|++|+++
T Consensus       484 ----------------------------------------~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~  521 (567)
T 1dce_A          484 ----------------------------------------ALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQ  521 (567)
T ss_dssp             ----------------------------------------GCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCC
T ss_pred             ----------------------------------------cCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCC
Confidence                                                    16778899999999985 55 7889999999999999999


Q ss_pred             cCc-hhhhhcCCCcCEEEccCCcccccCchh---hhhhHhhhcc
Q 044176          314 GSI-PVSFANMIVLESLDLSSNKLHGRIPEQ---FVDAEICSSF  353 (362)
Q Consensus       314 ~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~~---~~~l~~L~~l  353 (362)
                      +.. |..+..+++|+.|++++|++++..|..   +..+++|+.|
T Consensus       522 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L  565 (567)
T 1dce_A          522 QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  565 (567)
T ss_dssp             SSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCcc
Confidence            765 889999999999999999999654432   2335556555

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.64  E-value=5.6e-16  Score=135.92  Aligned_cols=216  Identities=15%  Similarity=0.110  Sum_probs=151.6

Q ss_pred             CCCCcEEEcCCCccc--ccccCCcCCCcEEEccCCcCCCCCCCC--------CCCccEEEccCcccccCCcccccCCCCC
Q 044176           18 WKSLTYLDISNNFLT--QIEQHPWKNITVLNLQNNTIQGTILVP--------PPSTRAFLFSNNKLFGQIPPSIYSLSSL   87 (362)
Q Consensus        18 ~~~L~~L~ls~~~i~--~~~~~~~~~L~~L~l~~n~~~~~~~~~--------~~~L~~L~l~~~~~~~~~~~~~~~l~~L   87 (362)
                      +++|+.||+++|+|.  ......++.++.+.+..+.+....+.+        +++|+.+++.+ .++.+.+.+|.++++|
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L  126 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL  126 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence            578999999999999  444456666777888888888888888        89999999988 7877777889999999


Q ss_pred             CEEEcccCcccccCCCCcccccccccEEEcccccc----c----------------------Ccchh-------------
Q 044176           88 EYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYL----Q----------------------GRIPD-------------  128 (362)
Q Consensus        88 ~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~----~----------------------~~~~~-------------  128 (362)
                      +++++.+|.+. .++...+....++..+.......    .                      +.++.             
T Consensus       127 ~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~  205 (329)
T 3sb4_A          127 KICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDIN  205 (329)
T ss_dssp             CEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCS
T ss_pred             ceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccc
Confidence            99999999887 55554444333444444333110    0                      00111             


Q ss_pred             --------------hhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhccCCCCCC-eEEccCC
Q 044176          129 --------------AFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLK-ILVLRSN  193 (362)
Q Consensus       129 --------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~L~l~~n  193 (362)
                                    .+...+++|+++++++|.++.....+|..+.+|+.+++.+| +......+|.++++|+ .+++.. 
T Consensus       206 ~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-  283 (329)
T 3sb4_A          206 FLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-  283 (329)
T ss_dssp             EEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-
T ss_pred             eEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-
Confidence                          11112467888888888887666677888888888888877 6555667788888888 888876 


Q ss_pred             cCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhcc
Q 044176          194 RFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVD  240 (362)
Q Consensus       194 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~  240 (362)
                      .++.  ....+|..|++|+.+++..+.+. .++...|..+++|+.++
T Consensus       284 ~l~~--I~~~aF~~c~~L~~l~l~~n~i~-~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          284 SVTA--IEFGAFMGCDNLRYVLATGDKIT-TLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             TCCE--ECTTTTTTCTTEEEEEECSSCCC-EECTTTTCTTCCCCEEE
T ss_pred             cceE--EchhhhhCCccCCEEEeCCCccC-ccchhhhcCCcchhhhc
Confidence            4443  22335678888888888888877 45555577777776654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.63  E-value=2e-15  Score=119.04  Aligned_cols=132  Identities=23%  Similarity=0.220  Sum_probs=75.6

Q ss_pred             CCccEEEccCcccc-cCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccE
Q 044176           61 PSTRAFLFSNNKLF-GQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRS  139 (362)
Q Consensus        61 ~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  139 (362)
                      ++|++|++++|.+. +.+|..+..+++|++|++++|.++ .+ ..+..+ ++|++|++++|.+.+..|..+... ++|++
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~-~~-~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~   99 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKL-PKLKKLELSENRIFGGLDMLAEKL-PNLTH   99 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC-CC-SSCCCC-SSCCEEEEESCCCCSCCCHHHHHC-TTCCE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC-Ch-hhhccC-CCCCEEECcCCcCchHHHHHHhhC-CCCCE
Confidence            44555555555554 345555666667777777777666 33 444444 566666666666664444444433 56666


Q ss_pred             EeccCCcccCCC-chhhhcCCCCcEEEccCCCCCCCcc---hhccCCCCCCeEEccCCcCC
Q 044176          140 LGLNSNKLRGSF-PRYLADCTGLEVVNVGNNMIGDTFP---SWLGSLPGLKILVLRSNRFY  196 (362)
Q Consensus       140 L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~n~~~  196 (362)
                      |++++|.+++.. +..+..+++|+.|++++|.+++..+   ..+..+++|++|++++|...
T Consensus       100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            666666665322 1455566666666666666544433   34555666666666665544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.62  E-value=3.3e-15  Score=117.75  Aligned_cols=136  Identities=18%  Similarity=0.174  Sum_probs=91.4

Q ss_pred             CCCcEEEccCCCCC-CCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhh
Q 044176          159 TGLEVVNVGNNMIG-DTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMK  237 (362)
Q Consensus       159 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~  237 (362)
                      ++|+.|++++|.+. +.+|..+..+++|++|++++|.+.+.    ..+..+++|++|++++|.+.+..+... .      
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~------   92 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV----SNLPKLPKLKKLELSENRIFGGLDMLA-E------   92 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC----SSCCCCSSCCEEEEESCCCCSCCCHHH-H------
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh----hhhccCCCCCEEECcCCcCchHHHHHH-h------
Confidence            45566666666554 34444455666666666666666543    233566777777777777765444321 1      


Q ss_pred             hccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCcccCCCc-chhhcCCCCCcEEEccCCcCccCc
Q 044176          238 NVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEI-PQVLGDFKSLIVLNLSHNGLTGSI  316 (362)
Q Consensus       238 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~i~~~~  316 (362)
                                                          .+++|+.|++++|.+++.. +..+..+++|+.|++++|.+++..
T Consensus        93 ------------------------------------~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~  136 (168)
T 2ell_A           93 ------------------------------------KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN  136 (168)
T ss_dssp             ------------------------------------HCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTST
T ss_pred             ------------------------------------hCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchH
Confidence                                                1567888888888887543 267788899999999999988554


Q ss_pred             h---hhhhcCCCcCEEEccCCcccccCch
Q 044176          317 P---VSFANMIVLESLDLSSNKLHGRIPE  342 (362)
Q Consensus       317 ~---~~~~~~~~L~~L~l~~n~~~~~~~~  342 (362)
                      +   ..+..+++|++|++++|.+.. +|+
T Consensus       137 ~~~~~~~~~l~~L~~L~l~~n~~~~-~~~  164 (168)
T 2ell_A          137 DYRESVFKLLPQLTYLDGYDREDQE-APD  164 (168)
T ss_dssp             THHHHHHTTCSSCCEETTEETTSCB-CCS
T ss_pred             HHHHHHHHhCccCcEecCCCCChhh-ccc
Confidence            4   478889999999999998873 443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.61  E-value=6.6e-18  Score=158.16  Aligned_cols=175  Identities=21%  Similarity=0.174  Sum_probs=91.3

Q ss_pred             cCCCCcEEEcCCCccccccc--CCcCCCcEEEccCCcC-------------CCCC---CCCCCCccEEE-ccCcccccCC
Q 044176           17 RWKSLTYLDISNNFLTQIEQ--HPWKNITVLNLQNNTI-------------QGTI---LVPPPSTRAFL-FSNNKLFGQI   77 (362)
Q Consensus        17 ~~~~L~~L~ls~~~i~~~~~--~~~~~L~~L~l~~n~~-------------~~~~---~~~~~~L~~L~-l~~~~~~~~~   77 (362)
                      ..++|+.|++++|+++.+|.  ..+++|+.|++++|..             .+..   +..+++|+.|+ ++.+.+....
T Consensus       347 ~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~  426 (567)
T 1dce_A          347 TDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR  426 (567)
T ss_dssp             TTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred             cCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhh
Confidence            35899999999999998887  5788999999877631             1110   11134444444 2222211000


Q ss_pred             cc-----cccC--CCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCC
Q 044176           78 PP-----SIYS--LSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGS  150 (362)
Q Consensus        78 ~~-----~~~~--l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  150 (362)
                      .-     .+..  ...|+.|++++|.++ .+|. +..+ ++|+.|++++|.++ .+|..+... ++|++|++++|.+++ 
T Consensus       427 ~l~l~~n~i~~l~~~~L~~L~Ls~n~l~-~lp~-~~~l-~~L~~L~Ls~N~l~-~lp~~~~~l-~~L~~L~Ls~N~l~~-  500 (567)
T 1dce_A          427 SKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LEQL-LLVTHLDLSHNRLR-ALPPALAAL-RCLEVLQASDNALEN-  500 (567)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEECTTSCCS-SCCC-GGGG-TTCCEEECCSSCCC-CCCGGGGGC-TTCCEEECCSSCCCC-
T ss_pred             hhhhhcccccccCccCceEEEecCCCCC-CCcC-cccc-ccCcEeecCccccc-ccchhhhcC-CCCCEEECCCCCCCC-
Confidence            00     0000  113555555555555 3443 4444 45555555555555 445544433 555555555555553 


Q ss_pred             CchhhhcCCCCcEEEccCCCCCCCc-chhccCCCCCCeEEccCCcCCCc
Q 044176          151 FPRYLADCTGLEVVNVGNNMIGDTF-PSWLGSLPGLKILVLRSNRFYGP  198 (362)
Q Consensus       151 ~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~  198 (362)
                      +| .++.+++|+.|++++|.+++.. |..++.+++|+.|++++|.+++.
T Consensus       501 lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~  548 (567)
T 1dce_A          501 VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE  548 (567)
T ss_dssp             CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence            33 4555555555555555554443 45555555555555555555443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.60  E-value=9.6e-15  Score=117.63  Aligned_cols=126  Identities=23%  Similarity=0.242  Sum_probs=74.3

Q ss_pred             cEEEcCCCcccccccCCcCCCcEEEccCCcCCCCCC----CCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcc
Q 044176           22 TYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTIL----VPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNL   97 (362)
Q Consensus        22 ~~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~   97 (362)
                      +.+++++++++.++.....+++.|++++|.+.+...    ..+++|++|++++|.+.+..|..|.++++|++|++++|++
T Consensus        11 ~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l   90 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI   90 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCC
T ss_pred             CEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcC
Confidence            577888888887777655677777777777664332    2356666666666666655556666666666666666666


Q ss_pred             cccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccC
Q 044176           98 SGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRG  149 (362)
Q Consensus        98 ~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  149 (362)
                      ++..+..+..+ ++|++|++++|++.+..|..+... ++|++|++++|++.+
T Consensus        91 ~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A           91 KEISNKMFLGL-HQLKTLNLYDNQISCVMPGSFEHL-NSLTSLNLASNPFNC  140 (192)
T ss_dssp             CEECSSSSTTC-TTCCEEECCSSCCCEECTTSSTTC-TTCCEEECTTCCBCC
T ss_pred             CccCHHHhcCC-CCCCEEECCCCcCCeeCHHHhhcC-CCCCEEEeCCCCccC
Confidence            53333333333 456666666665554444444332 555555555555543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.59  E-value=1.1e-14  Score=117.20  Aligned_cols=133  Identities=23%  Similarity=0.227  Sum_probs=87.3

Q ss_pred             CEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEcc
Q 044176           88 EYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVG  167 (362)
Q Consensus        88 ~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  167 (362)
                      ++++++++.++ .+|..+.   .++++|++++|.+....+..+...+++|++|++++|.+++..+..|..+++|+.|+++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence            56667777666 6666443   2567777777776633333222233677777777777776666677777777777777


Q ss_pred             CCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCc
Q 044176          168 NNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLP  226 (362)
Q Consensus       168 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  226 (362)
                      +|.+.+..+..+..+++|++|++++|.+++..+..+  ..+++|++|++++|.+....+
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF--EHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS--TTCTTCCEEECTTCCBCCSGG
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHh--hcCCCCCEEEeCCCCccCcCc
Confidence            777766666667777777777777777766544433  566777777777777765544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.59  E-value=4.3e-15  Score=114.58  Aligned_cols=127  Identities=20%  Similarity=0.250  Sum_probs=71.5

Q ss_pred             CCccEEEccCcccc-cCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccE
Q 044176           61 PSTRAFLFSNNKLF-GQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRS  139 (362)
Q Consensus        61 ~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  139 (362)
                      +++++|++++|.+. +.+|..+..+++|++|++++|.++ .+ ..+..+ ++|++|++++|.+.+.+|..+... ++|++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~-~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~   92 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKL-NKLKKLELSDNRVSGGLEVLAEKC-PNLTH   92 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC-CC-TTCCCC-TTCCEEECCSSCCCSCTHHHHHHC-TTCCE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC-Cc-hhhhcC-CCCCEEECCCCcccchHHHHhhhC-CCCCE
Confidence            44555555555554 445556666777777777777666 33 444444 566666666666664455544433 56666


Q ss_pred             EeccCCcccCC-CchhhhcCCCCcEEEccCCCCCCCcc---hhccCCCCCCeEEcc
Q 044176          140 LGLNSNKLRGS-FPRYLADCTGLEVVNVGNNMIGDTFP---SWLGSLPGLKILVLR  191 (362)
Q Consensus       140 L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~  191 (362)
                      |++++|.+++. .+..+..+++|+.|++++|.+++..+   ..+..+++|+.|+++
T Consensus        93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            66666666532 12455556666666666665544333   344555555555543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.59  E-value=8.5e-15  Score=112.90  Aligned_cols=77  Identities=21%  Similarity=0.212  Sum_probs=33.0

Q ss_pred             cccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccC-chhhhhcCCCcCEEEccCCcccccCc---hhhhhhHhhhc
Q 044176          277 IFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGS-IPVSFANMIVLESLDLSSNKLHGRIP---EQFVDAEICSS  352 (362)
Q Consensus       277 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~---~~~~~l~~L~~  352 (362)
                      +|+.|++++|.+++.+|..+..+++|+.|++++|.+++. .+..+..+++|++|++++|++++..+   ..+..+++|+.
T Consensus        65 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~  144 (149)
T 2je0_A           65 KLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTY  144 (149)
T ss_dssp             TCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCE
T ss_pred             CCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCccc
Confidence            344444444444433333333444444444444444421 12344444455555555554443322   23444444444


Q ss_pred             c
Q 044176          353 F  353 (362)
Q Consensus       353 l  353 (362)
                      |
T Consensus       145 L  145 (149)
T 2je0_A          145 L  145 (149)
T ss_dssp             E
T ss_pred             c
Confidence            4

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.58  E-value=5.9e-14  Score=125.84  Aligned_cols=268  Identities=10%  Similarity=0.139  Sum_probs=170.3

Q ss_pred             ccccCCCCcEEEcCCCcccccccCCc--CCCcEEEccCC--cCCCCCCCCCCCccEEEccCcccccCCcccccCCCCCCE
Q 044176           14 DSQRWKSLTYLDISNNFLTQIEQHPW--KNITVLNLQNN--TIQGTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEY   89 (362)
Q Consensus        14 ~~~~~~~L~~L~ls~~~i~~~~~~~~--~~L~~L~l~~n--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~   89 (362)
                      ++..+..++.+.+.++ ++.++...|  .+|+.+.+..+  .|....+.. .+|+.+.+.. .+..+...+|.++++|+.
T Consensus       108 ~~~~~~~l~~i~ip~~-i~~I~~~aF~~~~L~~i~l~~~i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~  184 (401)
T 4fdw_A          108 LTEILKGYNEIILPNS-VKSIPKDAFRNSQIAKVVLNEGLKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKK  184 (401)
T ss_dssp             EEEECSSCSEEECCTT-CCEECTTTTTTCCCSEEECCTTCCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred             EEEecCCccEEEECCc-cCEehHhhcccCCccEEEeCCCccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCe
Confidence            3444577777777664 666665333  35777777655  222344444 3688888875 566566678888899999


Q ss_pred             EEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCC
Q 044176           90 ISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNN  169 (362)
Q Consensus        90 L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  169 (362)
                      +++.+|.++ .++...+.. .+|+.+.+..+ +. .++...+..+++|+.+.+..+ ++.....+|.. ..|+.+.+.+ 
T Consensus       185 l~l~~n~l~-~I~~~aF~~-~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-  257 (401)
T 4fdw_A          185 ADLSKTKIT-KLPASTFVY-AGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-  257 (401)
T ss_dssp             EECTTSCCS-EECTTTTTT-CCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-
T ss_pred             eecCCCcce-EechhhEee-cccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-
Confidence            999888888 777776665 68888888744 54 344433334478888888765 44344556666 6788888843 


Q ss_pred             CCCCCcchhccCCCCCCeEEccCCcCCCc---cccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCc
Q 044176          170 MIGDTFPSWLGSLPGLKILVLRSNRFYGP---LCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDG  246 (362)
Q Consensus       170 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~---~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~  246 (362)
                      .++.....+|.++++|+.+.+.++.....   .....+|..|++|+.+++.. .+. .++...|..              
T Consensus       258 ~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~-~I~~~aF~~--------------  321 (401)
T 4fdw_A          258 GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIR-ILGQGLLGG--------------  321 (401)
T ss_dssp             TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCC-EECTTTTTT--------------
T ss_pred             CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceE-EEhhhhhcC--------------
Confidence            34445556778888888888877655311   12223456677777777663 233 222222222              


Q ss_pred             ccccCCccccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCC-C
Q 044176          247 LYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMI-V  325 (362)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~-~  325 (362)
                                                  +++|+.+++..+ ++......|.++ +|+.+++.+|.+.......|..++ .
T Consensus       322 ----------------------------c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~  371 (401)
T 4fdw_A          322 ----------------------------NRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDD  371 (401)
T ss_dssp             ----------------------------CCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTT
T ss_pred             ----------------------------CCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCC
Confidence                                        556777777544 554556677777 888888888877766666677774 6


Q ss_pred             cCEEEccCCccc
Q 044176          326 LESLDLSSNKLH  337 (362)
Q Consensus       326 L~~L~l~~n~~~  337 (362)
                      ++.|.+..+.+.
T Consensus       372 l~~l~vp~~~~~  383 (401)
T 4fdw_A          372 ITVIRVPAESVE  383 (401)
T ss_dssp             CCEEEECGGGHH
T ss_pred             ccEEEeCHHHHH
Confidence            777777766544

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.58  E-value=1.6e-15  Score=146.39  Aligned_cols=160  Identities=18%  Similarity=0.124  Sum_probs=100.3

Q ss_pred             CCCccEEEccCcccccCCcccccCCCCCCE-----EEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCC
Q 044176           60 PPSTRAFLFSNNKLFGQIPPSIYSLSSLEY-----ISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGS  134 (362)
Q Consensus        60 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~-----L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  134 (362)
                      .+.++.+++.++.+.. .+..+.....|..     ++++.+.+. ..+..+..+ +.|+.|++++|.+. .+|..+... 
T Consensus       172 ~~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l-~~L~~L~Ls~n~l~-~l~~~~~~l-  246 (727)
T 4b8c_D          172 TPLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDD-QLWHALDLSNLQIF-NISANIFKY-  246 (727)
T ss_dssp             ----------------------------------------------------CC-CCCCEEECTTSCCS-CCCGGGGGC-
T ss_pred             CCccceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee-cChhhhccC-CCCcEEECCCCCCC-CCChhhcCC-
Confidence            3456667776666653 2333222222222     333444444 345555555 78999999999998 788777754 


Q ss_pred             CCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEE
Q 044176          135 CDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRII  214 (362)
Q Consensus       135 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L  214 (362)
                      ++|++|++++|.++ .+|..++.+++|+.|++++|.++ .+|..++.+++|++|+|++|.+.. .+..  +..+++|++|
T Consensus       247 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~-lp~~--~~~l~~L~~L  321 (727)
T 4b8c_D          247 DFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTT-LPWE--FGNLCNLQFL  321 (727)
T ss_dssp             CSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCC-CCSS--TTSCTTCCCE
T ss_pred             CCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCc-cChh--hhcCCCccEE
Confidence            89999999999999 78889999999999999999997 668889999999999999999874 3433  4889999999


Q ss_pred             eccCCcccCCCchhH
Q 044176          215 DLSHNEFTGFLPRWI  229 (362)
Q Consensus       215 ~l~~n~~~~~~~~~~  229 (362)
                      ++++|.+.+..+..+
T Consensus       322 ~L~~N~l~~~~p~~~  336 (727)
T 4b8c_D          322 GVEGNPLEKQFLKIL  336 (727)
T ss_dssp             ECTTSCCCSHHHHHH
T ss_pred             eCCCCccCCCChHHH
Confidence            999999997766553

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.56  E-value=5.4e-14  Score=113.23  Aligned_cols=62  Identities=26%  Similarity=0.318  Sum_probs=31.3

Q ss_pred             CCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCC
Q 044176          135 CDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFY  196 (362)
Q Consensus       135 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  196 (362)
                      ++|++|++++|.+++..+..|..+++|+.|++++|.+....+..+..+++|+.|++++|++.
T Consensus        78 ~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           78 TQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            44444444444444444444555555555555555554443444555555555555555543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.55  E-value=1.1e-13  Score=111.51  Aligned_cols=131  Identities=18%  Similarity=0.206  Sum_probs=112.4

Q ss_pred             CEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEcc
Q 044176           88 EYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVG  167 (362)
Q Consensus        88 ~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  167 (362)
                      ++++++++.++ .+|..+.   +++++|++++|.++ .+|..+... ++|++|++++|.+++..+..|..+++|+.|+++
T Consensus        13 ~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~n~i~-~ip~~~~~l-~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls   86 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP---RDVTELYLDGNQFT-LVPKELSNY-KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS   86 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC---TTCCEEECCSSCCC-SCCGGGGGC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CEEEcCCCCCC-cCCCCCC---CCCCEEECCCCcCc-hhHHHhhcc-cCCCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence            57899999998 8887653   57999999999998 678777654 899999999999997777889999999999999


Q ss_pred             CCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCc
Q 044176          168 NNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLP  226 (362)
Q Consensus       168 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  226 (362)
                      +|.++...+..+..+++|++|++++|.+.......  +..+++|+.|++++|.+.....
T Consensus        87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~N~~~C~c~  143 (193)
T 2wfh_A           87 YNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGA--FNDLSALSHLAIGANPLYCDCN  143 (193)
T ss_dssp             SSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTT--TTTCTTCCEEECCSSCEECSGG
T ss_pred             CCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhh--hhcCccccEEEeCCCCeecCCc
Confidence            99998888888999999999999999998654443  4778999999999999875444

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.53  E-value=1.6e-13  Score=109.01  Aligned_cols=42  Identities=17%  Similarity=0.226  Sum_probs=17.4

Q ss_pred             hhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCC
Q 044176          155 LADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFY  196 (362)
Q Consensus       155 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  196 (362)
                      +..+++|+.|++++|.+++..+..+..+++|++|++++|++.
T Consensus        96 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           96 FDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             hhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence            333444444444444443333333344444444444444443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.52  E-value=1.6e-13  Score=109.05  Aligned_cols=127  Identities=26%  Similarity=0.330  Sum_probs=62.9

Q ss_pred             cEEEcCCCcccccccCCcCCCcEEEccCCcCCCCCCCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccccC
Q 044176           22 TYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTI  101 (362)
Q Consensus        22 ~~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~  101 (362)
                      +.+++++++++.++....++|+.|++++|.+.+                     ..+..|..+++|++|++++|.++ .+
T Consensus        10 ~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~---------------------~~~~~~~~l~~L~~L~l~~n~l~-~~   67 (177)
T 2o6r_A           10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQS---------------------LPHGVFDKLTQLTKLSLSQNQIQ-SL   67 (177)
T ss_dssp             TEEECCSSCCSSCCTTCCTTCSEEECCSSCCCC---------------------CCTTTTTTCTTCSEEECCSSCCC-CC
T ss_pred             CEEEecCCCCccCCCCCCCCCcEEEeCCCcccE---------------------eCHHHhcCcccccEEECCCCcce-Ee
Confidence            456666666666665555566666666555543                     33333444555555555555554 33


Q ss_pred             CCCc-ccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCC
Q 044176          102 PPCL-GNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIG  172 (362)
Q Consensus       102 ~~~l-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  172 (362)
                      +... ..+ ++|++|++++|.+++ +|......+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus        68 ~~~~~~~l-~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           68 PDGVFDKL-TKLTILYLHENKLQS-LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             CTTTTTTC-TTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ChhHccCC-CccCEEECCCCCccc-cCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence            3322 222 445555555555542 22222122245555555555555333334445555555555555553

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.52  E-value=2.8e-13  Score=121.43  Aligned_cols=79  Identities=9%  Similarity=0.057  Sum_probs=61.6

Q ss_pred             hcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCchhhhhhH-hhhc
Q 044176          274 IITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAE-ICSS  352 (362)
Q Consensus       274 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~  352 (362)
                      .+++|+.+++.+ .++......|.++++|+.++|..+ ++.+...+|.+| +|+.+++.+|......+..|..++ .+..
T Consensus       298 ~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~  374 (401)
T 4fdw_A          298 GCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITV  374 (401)
T ss_dssp             TCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCE
T ss_pred             CCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccE
Confidence            378899999984 476566778999999999999654 666777889999 999999999988866666777764 4444


Q ss_pred             cCC
Q 044176          353 FAR  355 (362)
Q Consensus       353 l~~  355 (362)
                      +.+
T Consensus       375 l~v  377 (401)
T 4fdw_A          375 IRV  377 (401)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            433

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.47  E-value=1.4e-13  Score=109.20  Aligned_cols=126  Identities=18%  Similarity=0.197  Sum_probs=78.8

Q ss_pred             CCCCcEEEcCCCccccccc-CC-cCCCcEEEccCCcCCCCCCCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccC
Q 044176           18 WKSLTYLDISNNFLTQIEQ-HP-WKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHN   95 (362)
Q Consensus        18 ~~~L~~L~ls~~~i~~~~~-~~-~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~   95 (362)
                      +++|+.|++++|.++.++. .. .++|+.|++++|.                     +.+.  ..+..+++|++|++++|
T Consensus        18 ~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~---------------------l~~~--~~l~~l~~L~~L~Ls~N   74 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNE---------------------IRKL--DGFPLLRRLKTLLVNNN   74 (176)
T ss_dssp             TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSC---------------------CCEE--CCCCCCSSCCEEECCSS
T ss_pred             cCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCC---------------------CCcc--cccccCCCCCEEECCCC
Confidence            4667777777776666543 12 2255555555554                     4433  45666777777777777


Q ss_pred             cccccCCCCc-ccccccccEEEcccccccCcchh--hhhcCCCCccEEeccCCcccCCCch----hhhcCCCCcEEEccC
Q 044176           96 NLSGTIPPCL-GNFSTQLTILHLNNNYLQGRIPD--AFANGSCDLRSLGLNSNKLRGSFPR----YLADCTGLEVVNVGN  168 (362)
Q Consensus        96 ~~~~~~~~~l-~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l~~  168 (362)
                      .++ .+|..+ ..+ ++|++|++++|.+. .+|.  .+.. +++|++|++++|.++ ..+.    .+..+++|+.|++++
T Consensus        75 ~l~-~~~~~~~~~l-~~L~~L~L~~N~i~-~~~~~~~l~~-l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~  149 (176)
T 1a9n_A           75 RIC-RIGEGLDQAL-PDLTELILTNNSLV-ELGDLDPLAS-LKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQK  149 (176)
T ss_dssp             CCC-EECSCHHHHC-TTCCEEECCSCCCC-CGGGGGGGGG-CTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEE
T ss_pred             ccc-ccCcchhhcC-CCCCEEECCCCcCC-cchhhHhhhc-CCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCc
Confidence            776 555554 334 57777777777775 4454  4443 367777888777776 3344    377778888888877


Q ss_pred             CCC
Q 044176          169 NMI  171 (362)
Q Consensus       169 ~~~  171 (362)
                      |..
T Consensus       150 n~~  152 (176)
T 1a9n_A          150 VKL  152 (176)
T ss_dssp             CCH
T ss_pred             CCH
Confidence            765

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.47  E-value=5.5e-13  Score=119.82  Aligned_cols=309  Identities=16%  Similarity=0.130  Sum_probs=153.9

Q ss_pred             ccccCCccccccCCCCcEEEcCCCcccccccC---CcCCCcEEEccCC--cCCCCCCCCCCCccEEEccCcccccCCccc
Q 044176            6 IRGRISKSDSQRWKSLTYLDISNNFLTQIEQH---PWKNITVLNLQNN--TIQGTILVPPPSTRAFLFSNNKLFGQIPPS   80 (362)
Q Consensus         6 ~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~---~~~~L~~L~l~~n--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~   80 (362)
                      ++ .|...+|..+.+|+.+.+..+ ++.++..   .+.+|+.+++..+  .+....+..++.|+.+.+..+ +......+
T Consensus        59 Vt-sIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a  135 (394)
T 4fs7_A           59 VV-SIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDSVKMIGRCTFSGCYALKSILLPLM-LKSIGVEA  135 (394)
T ss_dssp             EE-EECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred             Ee-EhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCCceEccchhhcccccchhhcccCc-eeeeccee
Confidence            55 678888988899999999754 8888774   4577999998755  233455666777776665433 22223333


Q ss_pred             ccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCC
Q 044176           81 IYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTG  160 (362)
Q Consensus        81 ~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~  160 (362)
                      |.++..........  .. .+....+....+|+.+.+..+..  .++...+..+.+|+.+.+..+ ++.....+|..+..
T Consensus       136 F~~~~~~~~~~~~~--~~-~i~~~aF~~c~~L~~i~l~~~~~--~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~  209 (394)
T 4fs7_A          136 FKGCDFKEITIPEG--VT-VIGDEAFATCESLEYVSLPDSME--TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECIL  209 (394)
T ss_dssp             TTTCCCSEEECCTT--CC-EECTTTTTTCTTCCEEECCTTCC--EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTT
T ss_pred             eecccccccccCcc--cc-ccchhhhcccCCCcEEecCCccc--eeccccccCCCCceEEEcCCC-ceEeCchhhccccc
Confidence            44333222221111  11 11122222223455555543321  122222222244555554443 22122334444444


Q ss_pred             CcEEEccCCCC---------------------CCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCC
Q 044176          161 LEVVNVGNNMI---------------------GDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHN  219 (362)
Q Consensus       161 L~~L~l~~~~~---------------------~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n  219 (362)
                      |+.+.+..+..                     +.....++..+..++.+.+..+...   ....++..+..++.+.....
T Consensus       210 L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~---i~~~~F~~~~~l~~~~~~~~  286 (394)
T 4fs7_A          210 LENMEFPNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR---IGGSLFYNCSGLKKVIYGSV  286 (394)
T ss_dssp             CCBCCCCTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE---ECSCTTTTCTTCCEEEECSS
T ss_pred             cceeecCCCceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcce---eeccccccccccceeccCce
Confidence            44444333221                     1112233444445555554433111   11122344444444444333


Q ss_pred             cccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCC
Q 044176          220 EFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDF  299 (362)
Q Consensus       220 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  299 (362)
                      .+.    ...+..+.+|+.+.+...                   ........+..+.+|+.+++.++ ++.....+|.++
T Consensus       287 ~i~----~~~F~~~~~L~~i~l~~~-------------------i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c  342 (394)
T 4fs7_A          287 IVP----EKTFYGCSSLTEVKLLDS-------------------VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGC  342 (394)
T ss_dssp             EEC----TTTTTTCTTCCEEEECTT-------------------CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTC
T ss_pred             eec----cccccccccccccccccc-------------------cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCC
Confidence            221    222344444444433221                   11111222334677888888644 554556677888


Q ss_pred             CCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhcc
Q 044176          300 KSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSF  353 (362)
Q Consensus       300 ~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l  353 (362)
                      ++|+.+.+..+ ++.+...+|.+|++|+.+++..+ ++ .+..+|.+++.|+.+
T Consensus       343 ~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          343 TSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             TTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred             CCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence            88888888765 65566677888888888888754 22 233456666666543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.45  E-value=2.2e-13  Score=108.02  Aligned_cols=136  Identities=17%  Similarity=0.200  Sum_probs=77.5

Q ss_pred             ccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCC
Q 044176           81 IYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTG  160 (362)
Q Consensus        81 ~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~  160 (362)
                      +.++.+|++|++++|.++ .++ .+....++|++|++++|.+.+ + ..+.. +++|++|++++|.+++..+..+..+++
T Consensus        15 ~~~~~~L~~L~l~~n~l~-~i~-~~~~~~~~L~~L~Ls~N~l~~-~-~~l~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~   89 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIP-VIE-NLGATLDQFDAIDFSDNEIRK-L-DGFPL-LRRLKTLLVNNNRICRIGEGLDQALPD   89 (176)
T ss_dssp             EECTTSCEEEECTTSCCC-SCC-CGGGGTTCCSEEECCSSCCCE-E-CCCCC-CSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             cCCcCCceEEEeeCCCCc-hhH-HhhhcCCCCCEEECCCCCCCc-c-ccccc-CCCCCEEECCCCcccccCcchhhcCCC
Confidence            445566666666666665 443 233432356666666666653 2 23332 356666666666666443344466667


Q ss_pred             CcEEEccCCCCCCCcch--hccCCCCCCeEEccCCcCCCcccc-ccccccCCcccEEeccCCccc
Q 044176          161 LEVVNVGNNMIGDTFPS--WLGSLPGLKILVLRSNRFYGPLCE-VNIMLPFEALRIIDLSHNEFT  222 (362)
Q Consensus       161 L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~~~L~~L~l~~n~~~  222 (362)
                      |+.|++++|.+.+ .+.  .+..+++|+.|++++|++...... ...+..+++|+.|+++.|...
T Consensus        90 L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           90 LTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            7777777766633 333  566677777777777766543221 012356677777777776654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.45  E-value=3e-15  Score=121.31  Aligned_cols=136  Identities=24%  Similarity=0.330  Sum_probs=97.0

Q ss_pred             cccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhc
Q 044176           78 PPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLAD  157 (362)
Q Consensus        78 ~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  157 (362)
                      |..+..+++|++|++++|.++ .+| .+..+ ++|++|++++|.+. .+|..+... ++|++|++++|.+++ ++ .+..
T Consensus        41 ~~~~~~l~~L~~L~ls~n~l~-~l~-~~~~l-~~L~~L~l~~n~l~-~l~~~~~~~-~~L~~L~L~~N~l~~-l~-~~~~  113 (198)
T 1ds9_A           41 DATLSTLKACKHLALSTNNIE-KIS-SLSGM-ENLRILSLGRNLIK-KIENLDAVA-DTLEELWISYNQIAS-LS-GIEK  113 (198)
T ss_dssp             HHHHHHTTTCSEEECSEEEES-CCC-CHHHH-TTCCEEEEEEEEEC-SCSSHHHHH-HHCSEEEEEEEECCC-HH-HHHH
T ss_pred             hHHHhcCCCCCEEECCCCCCc-ccc-ccccC-CCCCEEECCCCCcc-cccchhhcC-CcCCEEECcCCcCCc-CC-cccc
Confidence            347788888888888888887 566 66666 68888888888887 566655543 678888888888874 34 6777


Q ss_pred             CCCCcEEEccCCCCCCCcc-hhccCCCCCCeEEccCCcCCCcccc--------ccccccCCcccEEeccCCccc
Q 044176          158 CTGLEVVNVGNNMIGDTFP-SWLGSLPGLKILVLRSNRFYGPLCE--------VNIMLPFEALRIIDLSHNEFT  222 (362)
Q Consensus       158 l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~--------~~~~~~~~~L~~L~l~~n~~~  222 (362)
                      +++|+.|++++|.+.+... ..+..+++|++|++++|.+.+..+.        ...+..+++|+.|+  ++.+.
T Consensus       114 l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             CCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            8888888888888765432 4677888888888888877654332        11246677888876  45544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.43  E-value=8.3e-15  Score=130.10  Aligned_cols=113  Identities=17%  Similarity=0.054  Sum_probs=59.8

Q ss_pred             ccccEEEcccccccCcchhhhhcC----CCCccEEeccCCcccCCCchhh-hcCCCCcEEEccCCCCCCCcchhc-----
Q 044176          110 TQLTILHLNNNYLQGRIPDAFANG----SCDLRSLGLNSNKLRGSFPRYL-ADCTGLEVVNVGNNMIGDTFPSWL-----  179 (362)
Q Consensus       110 ~~L~~L~l~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~-----  179 (362)
                      +.|+.|++++|.++......+...    .+.|++|++++|.++......+ ..+++|+.|++++|.+++.....+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            457777777777653322222221    1367777777776653322222 234566777777776654433332     


Q ss_pred             cCCCCCCeEEccCCcCCCcccccc--ccccCCcccEEeccCCccc
Q 044176          180 GSLPGLKILVLRSNRFYGPLCEVN--IMLPFEALRIIDLSHNEFT  222 (362)
Q Consensus       180 ~~~~~L~~L~l~~n~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~  222 (362)
                      ...++|++|++++|.+++.....+  ++..+++|++|++++|.+.
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~  196 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG  196 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCC
Confidence            234566666666666543221111  2244556666666666655

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.42  E-value=6.5e-15  Score=119.32  Aligned_cols=152  Identities=18%  Similarity=0.148  Sum_probs=98.6

Q ss_pred             CCccEEeccCCcccCCCch------hhhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccC
Q 044176          135 CDLRSLGLNSNKLRGSFPR------YLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPF  208 (362)
Q Consensus       135 ~~L~~L~l~~~~~~~~~~~------~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~  208 (362)
                      ..++.++++.+.+.+..+.      .+..++.|+.|++++|.+.+ ++ .+..+++|++|++++|.+... +..  +..+
T Consensus        18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l-~~~--~~~~   92 (198)
T 1ds9_A           18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKI-ENL--DAVA   92 (198)
T ss_dssp             TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSC-SSH--HHHH
T ss_pred             ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccc-cch--hhcC
Confidence            4566666666665554444      77778888888888887755 44 566777788888887777642 222  2445


Q ss_pred             CcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCccc
Q 044176          209 EALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQF  288 (362)
Q Consensus       209 ~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~  288 (362)
                      ++|++|++++|.+.+ .+ . +.                                          .+++|+.|++++|.+
T Consensus        93 ~~L~~L~L~~N~l~~-l~-~-~~------------------------------------------~l~~L~~L~l~~N~i  127 (198)
T 1ds9_A           93 DTLEELWISYNQIAS-LS-G-IE------------------------------------------KLVNLRVLYMSNNKI  127 (198)
T ss_dssp             HHCSEEEEEEEECCC-HH-H-HH------------------------------------------HHHHSSEEEESEEEC
T ss_pred             CcCCEEECcCCcCCc-CC-c-cc------------------------------------------cCCCCCEEECCCCcC
Confidence            677777777777663 22 1 11                                          156677888888887


Q ss_pred             CCCcc-hhhcCCCCCcEEEccCCcCccCchh----------hhhcCCCcCEEEccCCcccc
Q 044176          289 QGEIP-QVLGDFKSLIVLNLSHNGLTGSIPV----------SFANMIVLESLDLSSNKLHG  338 (362)
Q Consensus       289 ~~~~~-~~~~~~~~L~~L~l~~n~i~~~~~~----------~~~~~~~L~~L~l~~n~~~~  338 (362)
                      ++..+ ..+..+++|+.|++++|.+.+..|.          .+..+++|+.||  ++.++.
T Consensus       128 ~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          128 TNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             CCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             CchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            74332 4567778888888888877654333          267778888776  666653

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.39  E-value=4.9e-12  Score=113.65  Aligned_cols=286  Identities=14%  Similarity=0.110  Sum_probs=173.8

Q ss_pred             cccccCCccccccCCCCcEEEcCCCcccccccC---CcCCCcEEEccCC--c----------------------CCCCCC
Q 044176            5 RIRGRISKSDSQRWKSLTYLDISNNFLTQIEQH---PWKNITVLNLQNN--T----------------------IQGTIL   57 (362)
Q Consensus         5 ~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~---~~~~L~~L~l~~n--~----------------------~~~~~~   57 (362)
                      .++ .|+..+|..+++|+.+++..+ ++.++..   .+..|+.+.+..+  .                      +....+
T Consensus        81 ~i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~~~~~~i~~~aF  158 (394)
T 4fs7_A           81 TVR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITIPEGVTVIGDEAF  158 (394)
T ss_dssp             TCC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEECCTTCCEECTTTT
T ss_pred             Ccc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccccccCccccccchhhh
Confidence            466 788889999999999999765 6666653   3445555544332  1                      112233


Q ss_pred             CCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCc
Q 044176           58 VPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDL  137 (362)
Q Consensus        58 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L  137 (362)
                      ..+++|+.+.+.++. ..+...+|.++.+|+.+.+..+ ++ .++...+.....|+.+.+..+...  +....... ..|
T Consensus       159 ~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~-~~l  232 (394)
T 4fs7_A          159 ATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFAECILLENMEFPNSLYY--LGDFALSK-TGV  232 (394)
T ss_dssp             TTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CC-EECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTT-CCC
T ss_pred             cccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ce-EeCchhhccccccceeecCCCceE--eehhhccc-CCC
Confidence            445566666665432 2234455666666666665544 32 333333332244555544443221  22222222 467


Q ss_pred             cEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEecc
Q 044176          138 RSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLS  217 (362)
Q Consensus       138 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~  217 (362)
                      +.+.+.... +.....++..+..++.+.+..+.. ......+..+..++.+......+     ...++..+.+|+.+.+.
T Consensus       233 ~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i-----~~~~F~~~~~L~~i~l~  305 (394)
T 4fs7_A          233 KNIIIPDSF-TELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIV-----PEKTFYGCSSLTEVKLL  305 (394)
T ss_dssp             CEEEECTTC-CEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEE-----CTTTTTTCTTCCEEEEC
T ss_pred             ceEEECCCc-eecccccccccccceeEEcCCCcc-eeeccccccccccceeccCceee-----ccccccccccccccccc
Confidence            777665442 223345677888899998877643 34455677888888887765432     22345778889998886


Q ss_pred             CCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhc
Q 044176          218 HNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLG  297 (362)
Q Consensus       218 ~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~  297 (362)
                      .+ +. .++...|..+.+|+.+.+...-                   .......+..+.+|+.+++..+ ++.....+|.
T Consensus       306 ~~-i~-~I~~~aF~~c~~L~~i~lp~~v-------------------~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~  363 (394)
T 4fs7_A          306 DS-VK-FIGEEAFESCTSLVSIDLPYLV-------------------EEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQ  363 (394)
T ss_dssp             TT-CC-EECTTTTTTCTTCCEECCCTTC-------------------CEECTTTTTTCTTCCEECCCTT-CCEECTTTBT
T ss_pred             cc-cc-eechhhhcCCCCCCEEEeCCcc-------------------cEEhHHhccCCCCCCEEEECcc-ccEehHHHhh
Confidence            54 33 4455557888888887765431                   1111222334789999999876 6656677899


Q ss_pred             CCCCCcEEEccCCcCccCchhhhhcCCCcCEE
Q 044176          298 DFKSLIVLNLSHNGLTGSIPVSFANMIVLESL  329 (362)
Q Consensus       298 ~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L  329 (362)
                      ++++|+.+++..+ +. ....+|.+|++|+.+
T Consensus       364 ~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          364 GCINLKKVELPKR-LE-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             TCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred             CCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence            9999999999755 33 345679999988875

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.36  E-value=9.1e-14  Score=123.40  Aligned_cols=139  Identities=17%  Similarity=0.096  Sum_probs=72.9

Q ss_pred             CCCCCEEEcccCcccccCCCCccc----ccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhh---
Q 044176           84 LSSLEYISLSHNNLSGTIPPCLGN----FSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLA---  156 (362)
Q Consensus        84 l~~L~~L~L~~~~~~~~~~~~l~~----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---  156 (362)
                      ++.|++|++++|.++......+..    ..++|++|++++|.+.......+...+++|++|++++|.++......+.   
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            356667777777665321111111    1135777777777665433344443345677777777766543333332   


Q ss_pred             --cCCCCcEEEccCCCCCCC----cchhccCCCCCCeEEccCCcCCCccccc--cccccCCcccEEeccCCccc
Q 044176          157 --DCTGLEVVNVGNNMIGDT----FPSWLGSLPGLKILVLRSNRFYGPLCEV--NIMLPFEALRIIDLSHNEFT  222 (362)
Q Consensus       157 --~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~  222 (362)
                        ..+.|+.|++++|.+++.    ++..+...++|++|++++|.+.+.....  .++..+++|++|++++|.+.
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~  224 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG  224 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence              346677777777766432    2233455666777777777665322111  12233445555555555554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.33  E-value=9e-12  Score=97.98  Aligned_cols=104  Identities=20%  Similarity=0.246  Sum_probs=54.0

Q ss_pred             CEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEcc
Q 044176           88 EYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVG  167 (362)
Q Consensus        88 ~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  167 (362)
                      ++++++++.++ .+|..+.   +++++|++++|.+.+..|..+... ++|++|++++|.+++..+..|..+++|+.|+++
T Consensus        12 ~~l~~s~n~l~-~ip~~~~---~~l~~L~L~~N~i~~~~~~~~~~l-~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           12 TTVDCSGKSLA-SVPTGIP---TTTQVLYLYDNQITKLEPGVFDRL-TQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             TEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcC-ccCccCC---CCCcEEEcCCCcCCccChhhhcCc-ccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            45566666665 4554442   345555665555553333333332 555555555555554444445555555555555


Q ss_pred             CCCCCCCcchhccCCCCCCeEEccCCcCC
Q 044176          168 NNMIGDTFPSWLGSLPGLKILVLRSNRFY  196 (362)
Q Consensus       168 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  196 (362)
                      +|.+.+..+..+..+++|++|++++|++.
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            55554444444555555555555555443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.33  E-value=1.2e-11  Score=97.34  Aligned_cols=106  Identities=28%  Similarity=0.275  Sum_probs=57.0

Q ss_pred             CcEEEcCCCcccccccCCcCCCcEEEccCCcCCCCCCCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCccccc
Q 044176           21 LTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGT  100 (362)
Q Consensus        21 L~~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~  100 (362)
                      .+.++++++.++.++....++++.|++++|.++                     +..|..|.++++|++|++++|+++ .
T Consensus        11 ~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~---------------------~~~~~~~~~l~~L~~L~Ls~N~l~-~   68 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGIPTTTQVLYLYDNQIT---------------------KLEPGVFDRLTQLTRLDLDNNQLT-V   68 (170)
T ss_dssp             TTEEECTTSCCSSCCSCCCTTCSEEECCSSCCC---------------------CCCTTTTTTCTTCSEEECCSSCCC-C
T ss_pred             CCEEEeCCCCcCccCccCCCCCcEEEcCCCcCC---------------------ccChhhhcCcccCCEEECCCCCcC-c
Confidence            355666666666666544455555555555544                     444555556666666666666665 4


Q ss_pred             CCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccC
Q 044176          101 IPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRG  149 (362)
Q Consensus       101 ~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  149 (362)
                      ++...+...++|++|++++|++.. +|......+++|++|++++|++..
T Consensus        69 l~~~~f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           69 LPAGVFDKLTQLTQLSLNDNQLKS-IPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             cChhhccCCCCCCEEECCCCccCE-eCHHHhcCCCCCCEEEeCCCCCCC
Confidence            444332222456666666666653 333222223566666666666553

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.30  E-value=1.7e-11  Score=96.77  Aligned_cols=104  Identities=23%  Similarity=0.284  Sum_probs=55.8

Q ss_pred             CEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEcc
Q 044176           88 EYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVG  167 (362)
Q Consensus        88 ~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  167 (362)
                      +.++++++.++ .+|..+.   ++|++|++++|.+.+..|..+... ++|++|++++|.+++..+..|..+++|+.|+++
T Consensus        15 ~~l~~~~n~l~-~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~   89 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHL-VNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN   89 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             cEEEeCCCCCC-ccCCCcC---CCCcEEEeCCCCccccCHHHhcCC-cCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence            45666666665 5555442   356666666666654334444332 556666666666554433444555566666666


Q ss_pred             CCCCCCCcchhccCCCCCCeEEccCCcCC
Q 044176          168 NNMIGDTFPSWLGSLPGLKILVLRSNRFY  196 (362)
Q Consensus       168 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  196 (362)
                      +|.+.+..+..+..+++|++|++++|++.
T Consensus        90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             SSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             CCccceeCHHHhccccCCCEEEeCCCCcc
Confidence            55554443334555555555555555544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.28  E-value=2.5e-11  Score=95.78  Aligned_cols=85  Identities=27%  Similarity=0.326  Sum_probs=40.0

Q ss_pred             CccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEe
Q 044176           62 STRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLG  141 (362)
Q Consensus        62 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  141 (362)
                      +|++|++++|.+.+..|..|.++++|++|+|++|+++ .+|...+...++|++|++++|.+. .+|......+++|++|+
T Consensus        34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~  111 (174)
T 2r9u_A           34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLNDNHLK-SIPRGAFDNLKSLTHIY  111 (174)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEE
T ss_pred             CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhEEECCCCccc-eeCHHHhccccCCCEEE
Confidence            3344444444444444555555566666666666555 444433221245555555555554 23332222224555555


Q ss_pred             ccCCccc
Q 044176          142 LNSNKLR  148 (362)
Q Consensus       142 l~~~~~~  148 (362)
                      +++|++.
T Consensus       112 L~~N~~~  118 (174)
T 2r9u_A          112 LYNNPWD  118 (174)
T ss_dssp             CCSSCBC
T ss_pred             eCCCCcc
Confidence            5555544

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.25  E-value=2.7e-10  Score=102.21  Aligned_cols=312  Identities=10%  Similarity=0.134  Sum_probs=188.6

Q ss_pred             ccccCCccccccCC-CCcEEEcCCCcccccccC---CcCCCcEEEccCCc------CCCCCCCCCCCccEEEccCccccc
Q 044176            6 IRGRISKSDSQRWK-SLTYLDISNNFLTQIEQH---PWKNITVLNLQNNT------IQGTILVPPPSTRAFLFSNNKLFG   75 (362)
Q Consensus         6 ~~~~~~~~~~~~~~-~L~~L~ls~~~i~~~~~~---~~~~L~~L~l~~n~------~~~~~~~~~~~L~~L~l~~~~~~~   75 (362)
                      ++ .|+..+|..+. .|+.+.+-.+ ++.++..   .+.+|+.+.+..+.      |....+..+.+|+.+.+..+ +..
T Consensus        51 Vt-~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~  127 (394)
T 4gt6_A           51 VS-KIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTE  127 (394)
T ss_dssp             EE-EECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSE
T ss_pred             ee-EcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cce
Confidence            55 68888888764 5999999765 7877774   45789999887652      33456777888888877654 444


Q ss_pred             CCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhh
Q 044176           76 QIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYL  155 (362)
Q Consensus        76 ~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  155 (362)
                      +...+|..+.+|+.+.+..+ +. .++...+.....|+.+.+..+ +......+| .. ..|+.+.+..+... ....++
T Consensus       128 I~~~aF~~c~~L~~i~lp~~-~~-~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF-~~-~~l~~i~ip~~~~~-i~~~af  201 (394)
T 4gt6_A          128 IDSEAFHHCEELDTVTIPEG-VT-SVADGMFSYCYSLHTVTLPDS-VTAIEERAF-TG-TALTQIHIPAKVTR-IGTNAF  201 (394)
T ss_dssp             ECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEECCTT-CCEECTTTT-TT-CCCSEEEECTTCCE-ECTTTT
T ss_pred             ehhhhhhhhcccccccccce-ee-eecccceecccccccccccce-eeEeccccc-cc-cceeEEEECCcccc-cccchh
Confidence            56678888999999998754 33 455555554467888888655 332223334 33 57888887765332 445567


Q ss_pred             hcCCCCcEEEccCCCCCCCcchhc-------------cCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCccc
Q 044176          156 ADCTGLEVVNVGNNMIGDTFPSWL-------------GSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFT  222 (362)
Q Consensus       156 ~~l~~L~~L~l~~~~~~~~~~~~~-------------~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  222 (362)
                      ..+..+.................+             .....+..+.+... +.  .....+|..+..|+.+.+..+.. 
T Consensus       202 ~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~--~i~~~aF~~c~~L~~i~lp~~~~-  277 (394)
T 4gt6_A          202 SECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VA--RIETHAFDSCAYLASVKMPDSVV-  277 (394)
T ss_dssp             TTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EE--EECTTTTTTCSSCCEEECCTTCC-
T ss_pred             hhccccceecccccccccccceeecccccccccccccccccccceEEcCCc-ce--EcccceeeecccccEEecccccc-
Confidence            777777777665443211100000             11122333333211 11  11223566777788877754432 


Q ss_pred             CCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCC
Q 044176          223 GFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSL  302 (362)
Q Consensus       223 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L  302 (362)
                       .+....+..+..|+.+.+...-                   .......+..+.+|+.+++.++ ++.....+|.++++|
T Consensus       278 -~I~~~aF~~c~~L~~i~l~~~i-------------------~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L  336 (394)
T 4gt6_A          278 -SIGTGAFMNCPALQDIEFSSRI-------------------TELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL  336 (394)
T ss_dssp             -EECTTTTTTCTTCCEEECCTTC-------------------CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred             -eecCcccccccccccccCCCcc-------------------cccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence             2334446666666666553221                   1111122334778888988754 554556678899999


Q ss_pred             cEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhccCC
Q 044176          303 IVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFAR  355 (362)
Q Consensus       303 ~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~~  355 (362)
                      +++.|..+ ++.+...+|.+|++|+.+++.++....   ..+.....|+.+.+
T Consensus       337 ~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i  385 (394)
T 4gt6_A          337 ERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPV  385 (394)
T ss_dssp             CEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC-----
T ss_pred             CEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEe
Confidence            99999654 665777889999999999999876542   34555555665543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.13  E-value=4.8e-09  Score=94.06  Aligned_cols=294  Identities=12%  Similarity=0.092  Sum_probs=188.8

Q ss_pred             ccccccCCcC----CCcEEEccCC--cCCCCCCCCCCCccEEEccCcc---cccCCcccccCCCCCCEEEcccCcccccC
Q 044176           31 LTQIEQHPWK----NITVLNLQNN--TIQGTILVPPPSTRAFLFSNNK---LFGQIPPSIYSLSSLEYISLSHNNLSGTI  101 (362)
Q Consensus        31 i~~~~~~~~~----~L~~L~l~~n--~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~~~~l~~L~~L~L~~~~~~~~~  101 (362)
                      ++.++..+|.    .|+.+.+..+  .|....+..+.+|+.+.+..+.   ++.+...+|..+.+|+.+.+..+ ++ .+
T Consensus        51 Vt~Ig~~aF~~~~~~L~sI~iP~svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~-~I  128 (394)
T 4gt6_A           51 VSKIGDRVFCNYKYVLTSVQIPDTVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT-EI  128 (394)
T ss_dssp             EEEECTTTTTTCCSCCCEEEECTTCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-EE
T ss_pred             eeEcCHhhccCCCCcCEEEEECCCeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-ee
Confidence            5666665553    4899998764  4556778889999999998763   55566678999999999887654 44 45


Q ss_pred             CCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhccC
Q 044176          102 PPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGS  181 (362)
Q Consensus       102 ~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  181 (362)
                      +...+....+|+.+.+.... . .++...+..+..|+.+.+..+ ++.....+|. ...|+.+.+..+.. .....++..
T Consensus       129 ~~~aF~~c~~L~~i~lp~~~-~-~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~-~i~~~af~~  203 (394)
T 4gt6_A          129 DSEAFHHCEELDTVTIPEGV-T-SVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVT-RIGTNAFSE  203 (394)
T ss_dssp             CTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCC-EECTTTTTT
T ss_pred             hhhhhhhhccccccccccee-e-eecccceecccccccccccce-eeEecccccc-ccceeEEEECCccc-ccccchhhh
Confidence            55555544789999997543 3 344433334478999998775 3323344554 46799999876543 344566888


Q ss_pred             CCCCCeEEccCCcCCCcccccc-----------ccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCccccc
Q 044176          182 LPGLKILVLRSNRFYGPLCEVN-----------IMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQ  250 (362)
Q Consensus       182 ~~~L~~L~l~~n~~~~~~~~~~-----------~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~  250 (362)
                      +.++..................           .......+..+.+.. .+. .+....|..+..++.+.+.....    
T Consensus       204 c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~-~i~~~aF~~c~~L~~i~lp~~~~----  277 (394)
T 4gt6_A          204 CFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVA-RIETHAFDSCAYLASVKMPDSVV----  277 (394)
T ss_dssp             CTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEE-EECTTTTTTCSSCCEEECCTTCC----
T ss_pred             ccccceecccccccccccceeecccccccccccccccccccceEEcCC-cce-EcccceeeecccccEEecccccc----
Confidence            8888888776543321111000           011112233333321 111 22233466666666665543221    


Q ss_pred             CCccccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEE
Q 044176          251 GEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLD  330 (362)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~  330 (362)
                                     ......+..+++|+.+.+. +.++......|.++.+|+.+.|..+ ++.+...+|.+|++|+.+.
T Consensus       278 ---------------~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~  340 (394)
T 4gt6_A          278 ---------------SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIA  340 (394)
T ss_dssp             ---------------EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEE
T ss_pred             ---------------eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEE
Confidence                           1112223347889999996 4455456678899999999999754 6656678899999999999


Q ss_pred             ccCCcccccCchhhhhhHhhhccCC
Q 044176          331 LSSNKLHGRIPEQFVDAEICSSFAR  355 (362)
Q Consensus       331 l~~n~~~~~~~~~~~~l~~L~~l~~  355 (362)
                      +..+ ++.+...+|.++.+|+.+..
T Consensus       341 ip~s-v~~I~~~aF~~C~~L~~i~~  364 (394)
T 4gt6_A          341 IPSS-VTKIPESAFSNCTALNNIEY  364 (394)
T ss_dssp             ECTT-CCBCCGGGGTTCTTCCEEEE
T ss_pred             ECcc-cCEEhHhHhhCCCCCCEEEE
Confidence            9765 66566678999998888743

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.99  E-value=1.2e-09  Score=96.25  Aligned_cols=156  Identities=17%  Similarity=0.179  Sum_probs=82.7

Q ss_pred             CCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhcc--CCCCCCeEEccCC--cCCCcc-c----ccccc
Q 044176          135 CDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLG--SLPGLKILVLRSN--RFYGPL-C----EVNIM  205 (362)
Q Consensus       135 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~n--~~~~~~-~----~~~~~  205 (362)
                      |+|+.|.++++.-. ..+. + ..++|+.|++..+.+.......+.  .+|+|++|+|+.+  ...+.. .    .....
T Consensus       172 P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~  248 (362)
T 2ra8_A          172 PLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK  248 (362)
T ss_dssp             TTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCT
T ss_pred             CCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhc
Confidence            66666666665211 1121 2 256677777666655433333332  5667777766421  111100 0    01111


Q ss_pred             ccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccC
Q 044176          206 LPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSS  285 (362)
Q Consensus       206 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  285 (362)
                      ..+++|++|++.+|.+....+..++..                                        ..++.|+.|+++.
T Consensus       249 ~~~p~Lr~L~L~~~~i~~~~~~~la~a----------------------------------------~~~~~L~~LdLs~  288 (362)
T 2ra8_A          249 DRFPNLKWLGIVDAEEQNVVVEMFLES----------------------------------------DILPQLETMDISA  288 (362)
T ss_dssp             TTCTTCCEEEEESCTTHHHHHHHHHHC----------------------------------------SSGGGCSEEECCS
T ss_pred             CCCCCcCEEeCCCCCCchHHHHHHHhC----------------------------------------ccCCCCCEEECCC
Confidence            246777777777766653221111100                                        0156788888888


Q ss_pred             cccCCCc----chhhcCCCCCcEEEccCCcCccCchhhhhc-CCCcCEEEccCCc
Q 044176          286 NQFQGEI----PQVLGDFKSLIVLNLSHNGLTGSIPVSFAN-MIVLESLDLSSNK  335 (362)
Q Consensus       286 n~~~~~~----~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~-~~~L~~L~l~~n~  335 (362)
                      |.+++..    +..+..+++|+.|++++|.+++.....+.. +  ...+++++++
T Consensus       289 n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          289 GVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             SCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             CCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            8776543    223345678888888888877655555554 2  3567777776

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.97  E-value=1.5e-09  Score=95.63  Aligned_cols=171  Identities=12%  Similarity=0.078  Sum_probs=99.4

Q ss_pred             CCccEEeccCCccc---------CCCchhhhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCcccccccc
Q 044176          135 CDLRSLGLNSNKLR---------GSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIM  205 (362)
Q Consensus       135 ~~L~~L~l~~~~~~---------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~  205 (362)
                      ++|+.|.+.+....         +.+...+..++.|+.|+++++.-.. .+. + .+++|++|++..+.+........+.
T Consensus       139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~-l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~  215 (362)
T 2ra8_A          139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS-IGK-K-PRPNLKSLEIISGGLPDSVVEDILG  215 (362)
T ss_dssp             TTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB-CCS-C-BCTTCSEEEEECSBCCHHHHHHHHH
T ss_pred             chhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce-ecc-c-cCCCCcEEEEecCCCChHHHHHHHH
Confidence            56777766543211         1233455667777777777662111 122 2 2677777777776665433222222


Q ss_pred             ccCCcccEEeccCC--cccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEec
Q 044176          206 LPFEALRIIDLSHN--EFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDL  283 (362)
Q Consensus       206 ~~~~~L~~L~l~~n--~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l  283 (362)
                      ..+++|+.|+++.+  ...+....      ..+..+                              .....+|+|+.|++
T Consensus       216 ~~lp~L~~L~L~~~~~~~~~~~~~------~~l~~~------------------------------l~~~~~p~Lr~L~L  259 (362)
T 2ra8_A          216 SDLPNLEKLVLYVGVEDYGFDGDM------NVFRPL------------------------------FSKDRFPNLKWLGI  259 (362)
T ss_dssp             SBCTTCCEEEEECBCGGGTCCSCG------GGTGGG------------------------------SCTTTCTTCCEEEE
T ss_pred             ccCCCCcEEEEeccccccccchhH------HHHHHH------------------------------HhcCCCCCcCEEeC
Confidence            35677777776431  11111000      000000                              00012688999999


Q ss_pred             cCcccCCCcchhh---cCCCCCcEEEccCCcCccCchh----hhhcCCCcCEEEccCCcccccCchhh
Q 044176          284 SSNQFQGEIPQVL---GDFKSLIVLNLSHNGLTGSIPV----SFANMIVLESLDLSSNKLHGRIPEQF  344 (362)
Q Consensus       284 ~~n~~~~~~~~~~---~~~~~L~~L~l~~n~i~~~~~~----~~~~~~~L~~L~l~~n~~~~~~~~~~  344 (362)
                      ++|.+.+..+..+   ..+++|+.|+|+.|.+.+..+.    .+..+++|+.|++++|.+++.....+
T Consensus       260 ~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l  327 (362)
T 2ra8_A          260 VDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKEL  327 (362)
T ss_dssp             ESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHH
T ss_pred             CCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHH
Confidence            9999875444333   3578999999999999864433    34567999999999999886443333

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.95  E-value=2.2e-09  Score=94.54  Aligned_cols=103  Identities=17%  Similarity=0.173  Sum_probs=71.9

Q ss_pred             cEEEccCc-ccccCCcccccCCCCCCEEEccc-CcccccCC-CCcccccccccEEEcccccccCcchhhhhcCCCCccEE
Q 044176           64 RAFLFSNN-KLFGQIPPSIYSLSSLEYISLSH-NNLSGTIP-PCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSL  140 (362)
Q Consensus        64 ~~L~l~~~-~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~~~-~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  140 (362)
                      ..++++++ .+. .+|. +..+.+|++|+|++ |.++ .++ ..+..+ ++|++|++++|.+.+..|..|... ++|++|
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~-~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~l-~~L~~L   85 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQ-HLELRDLRGL-GELRNLTIVKSGLRFVAPDAFHFT-PRLSRL   85 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCC-EECGGGSCSC-CCCSEEECCSSCCCEECTTGGGSC-SCCCEE
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCC-CcChhHhccc-cCCCEEECCCCccceeCHHHhcCC-cCCCEE
Confidence            34677776 676 4666 88888888888885 8887 444 445555 678888888888875555555543 788888


Q ss_pred             eccCCcccCCCchhhhcCCCCcEEEccCCCCC
Q 044176          141 GLNSNKLRGSFPRYLADCTGLEVVNVGNNMIG  172 (362)
Q Consensus       141 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  172 (362)
                      ++++|.+++..+..+..+. |+.|++.+|.+.
T Consensus        86 ~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           86 NLSFNALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             ECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             eCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            8888888755444555554 888888888774

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.94  E-value=4.7e-08  Score=87.14  Aligned_cols=73  Identities=15%  Similarity=0.156  Sum_probs=51.4

Q ss_pred             hcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCchhhhhhH
Q 044176          274 IITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAE  348 (362)
Q Consensus       274 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~  348 (362)
                      .+++|+.+.+.++.++......|.++.+|+.+.|..+ ++.+...+|.+|++|+.+.+..+ ++.+...+|.++.
T Consensus       284 ~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~  356 (379)
T 4h09_A          284 GCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS  356 (379)
T ss_dssp             TCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred             cccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence            3677888888777776556667788888888888643 55455677888888888888654 5545555676653

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.94  E-value=3.6e-09  Score=93.16  Aligned_cols=104  Identities=22%  Similarity=0.171  Sum_probs=77.7

Q ss_pred             EEEcccC-cccccCCCCcccccccccEEEccc-ccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEc
Q 044176           89 YISLSHN-NLSGTIPPCLGNFSTQLTILHLNN-NYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNV  166 (362)
Q Consensus        89 ~L~L~~~-~~~~~~~~~l~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  166 (362)
                      .++.+++ .++ .+|. +..+ ++|++|++++ |.+.+..+..|.. +++|++|++++|.+++..+..|..+++|+.|++
T Consensus        12 ~v~~~~~n~l~-~ip~-l~~~-~~L~~L~l~~~n~l~~~~~~~~~~-l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l   87 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LPGA-ENLTELYIENQQHLQHLELRDLRG-LGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SCSC-SCCSEEECCSCSSCCEECGGGSCS-CCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             EEEcCCCCCCC-ccCC-CCCC-CCeeEEEccCCCCCCCcChhHhcc-ccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence            5678887 787 7887 6666 6788888886 8887443444544 478888888888888777778888888888888


Q ss_pred             cCCCCCCCcchhccCCCCCCeEEccCCcCCC
Q 044176          167 GNNMIGDTFPSWLGSLPGLKILVLRSNRFYG  197 (362)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~  197 (362)
                      ++|.+....+..+..++ |+.|++.+|.+..
T Consensus        88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           88 SFNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             CSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             CCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            88888765555555554 8888888887764

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.90  E-value=9.1e-08  Score=85.24  Aligned_cols=81  Identities=15%  Similarity=0.205  Sum_probs=65.5

Q ss_pred             cccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhccC
Q 044176          275 ITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFA  354 (362)
Q Consensus       275 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~  354 (362)
                      +.+++.+.+..+ ++......|.++++|+.+.+.++.++.+...+|.+|++|+.+++..+ ++.+...+|.++.+|+++.
T Consensus       262 ~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~  339 (379)
T 4h09_A          262 CTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTIS  339 (379)
T ss_dssp             CTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCC
T ss_pred             eehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEE
Confidence            667888888654 44455667889999999999999888777789999999999999865 6656667899999999887


Q ss_pred             CCc
Q 044176          355 RPD  357 (362)
Q Consensus       355 ~~~  357 (362)
                      +++
T Consensus       340 ip~  342 (379)
T 4h09_A          340 YPK  342 (379)
T ss_dssp             CCT
T ss_pred             ECC
Confidence            653

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.80  E-value=2.6e-09  Score=85.01  Aligned_cols=65  Identities=18%  Similarity=0.229  Sum_probs=49.3

Q ss_pred             cccccEEeccCcccCCC----cchhhcCCCCCcEEEc--cCCcCccC----chhhhhcCCCcCEEEccCCccccc
Q 044176          275 ITIFTTIDLSSNQFQGE----IPQVLGDFKSLIVLNL--SHNGLTGS----IPVSFANMIVLESLDLSSNKLHGR  339 (362)
Q Consensus       275 ~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l--~~n~i~~~----~~~~~~~~~~L~~L~l~~n~~~~~  339 (362)
                      .+.|+.|++++|.+++.    +...+...+.|++|+|  ++|.+.+.    +...+...++|++|++++|.+...
T Consensus        92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~  166 (185)
T 1io0_A           92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR  166 (185)
T ss_dssp             CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred             CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence            45688888888888754    3455667788999999  88988854    345566778999999999988743

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.62  E-value=1.8e-08  Score=80.09  Aligned_cols=88  Identities=15%  Similarity=0.177  Sum_probs=63.1

Q ss_pred             cccccEEeccCcccCCCc----chhhcCCCCCcEEEccCCcCccC----chhhhhcCCCcCEEEc--cCCcccccCchhh
Q 044176          275 ITIFTTIDLSSNQFQGEI----PQVLGDFKSLIVLNLSHNGLTGS----IPVSFANMIVLESLDL--SSNKLHGRIPEQF  344 (362)
Q Consensus       275 ~~~L~~L~l~~n~~~~~~----~~~~~~~~~L~~L~l~~n~i~~~----~~~~~~~~~~L~~L~l--~~n~~~~~~~~~~  344 (362)
                      .++|++|+|++|.+++..    ...+...++|++|+|++|.|.+.    +..++...+.|++|++  ++|.+++.....+
T Consensus        64 ~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l  143 (185)
T 1io0_A           64 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEI  143 (185)
T ss_dssp             CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHH
T ss_pred             CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHH
Confidence            456889999999987643    34456678999999999999854    3566778899999999  8899997644433


Q ss_pred             hh-hHhhhccCCCccccCC
Q 044176          345 VD-AEICSSFARPDLYTNA  362 (362)
Q Consensus       345 ~~-l~~L~~l~~~~l~~n~  362 (362)
                      .. +...+.|...++++|.
T Consensus       144 ~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          144 ANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             HHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHhCCCcCEEeccCCC
Confidence            33 2333344444777763

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.47  E-value=2.6e-07  Score=77.16  Aligned_cols=84  Identities=21%  Similarity=0.247  Sum_probs=67.5

Q ss_pred             hhcccccEEeccCcccCC--CcchhhcCCCCCcEEEccCCcCccCchhhhhcCC--CcCEEEccCCcccccCch------
Q 044176          273 RIITIFTTIDLSSNQFQG--EIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMI--VLESLDLSSNKLHGRIPE------  342 (362)
Q Consensus       273 ~~~~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~--~L~~L~l~~n~~~~~~~~------  342 (362)
                      ..+++|+.|+|++|++++  .++..+..+++|+.|+|++|++.+.  ..+..++  .|++|++++|++.+.+|+      
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            347899999999999987  3456678899999999999999954  3445555  999999999999976652      


Q ss_pred             -hhhhhHhhhccCCCcc
Q 044176          343 -QFVDAEICSSFARPDL  358 (362)
Q Consensus       343 -~~~~l~~L~~l~~~~l  358 (362)
                       .+..+++|+.|+-..+
T Consensus       245 ~il~~~P~L~~LDg~~v  261 (267)
T 3rw6_A          245 AIRERFPKLLRLDGHEL  261 (267)
T ss_dssp             HHHHHCTTCCEESSCBC
T ss_pred             HHHHHCcccCeECCcCC
Confidence             4677888888876654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.41  E-value=5.5e-08  Score=75.47  Aligned_cols=81  Identities=6%  Similarity=-0.006  Sum_probs=56.7

Q ss_pred             cccEEeccCcccCCCcchhhcCCCCCcEEEccCCc-CccCchhhhhcC----CCcCEEEccCCc-ccccCchhhhhhHhh
Q 044176          277 IFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNG-LTGSIPVSFANM----IVLESLDLSSNK-LHGRIPEQFVDAEIC  350 (362)
Q Consensus       277 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-i~~~~~~~~~~~----~~L~~L~l~~n~-~~~~~~~~~~~l~~L  350 (362)
                      .|+.||+++|.++++....+..+++|+.|+|++|. +++.....+..+    ++|++|++++|. +|+..-..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            57888888888877766667788888888888884 666555666653    468888888874 776555556666666


Q ss_pred             hccCCCc
Q 044176          351 SSFARPD  357 (362)
Q Consensus       351 ~~l~~~~  357 (362)
                      ++|++.+
T Consensus       142 ~~L~L~~  148 (176)
T 3e4g_A          142 KYLFLSD  148 (176)
T ss_dssp             CEEEEES
T ss_pred             CEEECCC
Confidence            6664443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.15  E-value=9.2e-07  Score=68.59  Aligned_cols=34  Identities=18%  Similarity=0.047  Sum_probs=16.2

Q ss_pred             CCcEEEccCCC-CCCCcchhccCCCCCCeEEccCC
Q 044176          160 GLEVVNVGNNM-IGDTFPSWLGSLPGLKILVLRSN  193 (362)
Q Consensus       160 ~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~n  193 (362)
                      .|+.|++++|. +++.....+..+++|++|++++|
T Consensus       115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c  149 (176)
T 3e4g_A          115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDL  149 (176)
T ss_dssp             HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESC
T ss_pred             CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCC
Confidence            35555555442 44433334444555555555554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.01  E-value=5.9e-06  Score=68.99  Aligned_cols=80  Identities=23%  Similarity=0.265  Sum_probs=54.2

Q ss_pred             cCCCCCCEEEcccCcccc--cCCCCcccccccccEEEcccccccCcchhhhhcCCC--CccEEeccCCcccCCCc-----
Q 044176           82 YSLSSLEYISLSHNNLSG--TIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSC--DLRSLGLNSNKLRGSFP-----  152 (362)
Q Consensus        82 ~~l~~L~~L~L~~~~~~~--~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~-----  152 (362)
                      .++++|++|+|++|++++  .++..+..+ ++|+.|++++|.+.+.  ..+... .  .|++|++++|++.+..+     
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l-~~L~~L~Ls~N~i~~~--~~l~~l-~~l~L~~L~L~~Npl~~~~~~~~~y  242 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKA-PNLKILNLSGNELKSE--RELDKI-KGLKLEELWLDGNSLCDTFRDQSTY  242 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHS-TTCCEEECTTSCCCSG--GGGGGG-TTSCCSEEECTTSTTGGGCSSHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhC-CCCCEEECCCCccCCc--hhhhhc-ccCCcceEEccCCcCccccCcchhH
Confidence            467888888888888874  233444455 6888888888888743  222211 2  78888888888875443     


Q ss_pred             --hhhhcCCCCcEEE
Q 044176          153 --RYLADCTGLEVVN  165 (362)
Q Consensus       153 --~~~~~l~~L~~L~  165 (362)
                        ..+..+++|+.||
T Consensus       243 ~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          243 ISAIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHHHCTTCCEES
T ss_pred             HHHHHHHCcccCeEC
Confidence              3466788888886

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.79  E-value=1.7e-05  Score=62.70  Aligned_cols=63  Identities=11%  Similarity=0.131  Sum_probs=42.8

Q ss_pred             ccccEEeccCcccCCCc----chhhcCCCCCcEEEccCC---cCcc----CchhhhhcCCCcCEEEccCCcccc
Q 044176          276 TIFTTIDLSSNQFQGEI----PQVLGDFKSLIVLNLSHN---GLTG----SIPVSFANMIVLESLDLSSNKLHG  338 (362)
Q Consensus       276 ~~L~~L~l~~n~~~~~~----~~~~~~~~~L~~L~l~~n---~i~~----~~~~~~~~~~~L~~L~l~~n~~~~  338 (362)
                      +.|+.|+|+.|.|++..    ...+..-+.|++|+|++|   .+.+    .+.+.+..-+.|++|+++.|.+..
T Consensus        98 ~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g~  171 (197)
T 1pgv_A           98 PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASMEA  171 (197)
T ss_dssp             SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHHH
T ss_pred             CccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCccH
Confidence            45778888888876543    334555677888888765   3342    234556777889999998876653

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.50  E-value=6.2e-05  Score=59.48  Aligned_cols=61  Identities=16%  Similarity=0.125  Sum_probs=47.5

Q ss_pred             cccccEEeccCcccCCCc----chhhcCCCCCcEEEccCCcCccCch----hhhhcCCCcCEEEccCCc
Q 044176          275 ITIFTTIDLSSNQFQGEI----PQVLGDFKSLIVLNLSHNGLTGSIP----VSFANMIVLESLDLSSNK  335 (362)
Q Consensus       275 ~~~L~~L~l~~n~~~~~~----~~~~~~~~~L~~L~l~~n~i~~~~~----~~~~~~~~L~~L~l~~n~  335 (362)
                      -..|+.|+|++|.+.+..    ...+..-+.|++|+|++|.|.+...    +++..-+.|++|+|++|.
T Consensus        69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~  137 (197)
T 1pgv_A           69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQR  137 (197)
T ss_dssp             CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred             CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCc
Confidence            356899999999997653    4455677899999999999986443    445667889999998763

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.93  E-value=0.0019  Score=47.41  Aligned_cols=55  Identities=20%  Similarity=0.246  Sum_probs=33.4

Q ss_pred             EEeccCcccC-CCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcc
Q 044176          280 TIDLSSNQFQ-GEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKL  336 (362)
Q Consensus       280 ~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~  336 (362)
                      .++.+++.++ ..+|..+  .++|+.|+|++|+|+...+..|..+++|+.|+|++|.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            5666666665 2333322  23567777777777755555566777777777777754

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.63  E-value=0.0051  Score=45.14  Aligned_cols=33  Identities=21%  Similarity=0.286  Sum_probs=14.7

Q ss_pred             EEEccCcccccCCcccccCCCCCCEEEcccCcc
Q 044176           65 AFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNL   97 (362)
Q Consensus        65 ~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~   97 (362)
                      +|+|++|.++...+..|..+++|++|+|++|.+
T Consensus        35 ~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           35 ELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            333333333333334444555555555555544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	362
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-19
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.001
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-10
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.002
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	9e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	6e-06
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	1e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	2e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	3e-05
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.002
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	5e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.003
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	7e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.003

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 84.0 bits (206), Expect = 7e-19
 Identities = 50/263 (19%), Positives = 89/263 (33%), Gaps = 6/263 (2%)

Query: 83  SLSSLEYISLSHNNLSG--TIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSL 140
               +  + LS  NL     IP  L N    L  L++                   L  L
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANL-PYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 141 GLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLC 200
            +    + G+ P +L+    L  ++   N +  T P  + SLP L  +    NR  G + 
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 201 EVNIMLPFEALRIIDLSHN--EFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQD 258
           +           +    +            + ++   +     +G   +    +++  + 
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226

Query: 259 SVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPV 318
            +       DL    +      +DL +N+  G +PQ L   K L  LN+S N L G IP 
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP- 285

Query: 319 SFANMIVLESLDLSSNKLHGRIP 341
              N+   +    ++NK     P
Sbjct: 286 QGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 57.8 bits (138), Expect = 4e-10
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 60  PPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNN 119
             +       NN+++G +P  +  L  L  +++S NNL G IP   GN      +    N
Sbjct: 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQR-FDVSAYAN 300

Query: 120 N 120
           N
Sbjct: 301 N 301

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 43.2 bits (100), Expect = 3e-05
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 6/74 (8%)

Query: 36  QHPWKNITVLNLQNNTIQGTI---LVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISL 92
               KN+  L+L+NN I GT+   L       +   S N L G+IP    +L   +  + 
Sbjct: 240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAY 298

Query: 93  SHNNL--SGTIPPC 104
           ++N       +P C
Sbjct: 299 ANNKCLCGSPLPAC 312

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 76.6 bits (187), Expect = 4e-16
 Identities = 54/354 (15%), Positives = 104/354 (29%), Gaps = 27/354 (7%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ-HPWKNITVLNLQNNTIQGTILVP 59
           L    +   +S++D      +T L      +  I+      N+T +N  NN +     + 
Sbjct: 29  LGKTNVTDTVSQTD---LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLK 85

Query: 60  PPSTRAFLFSNNKLFGQIPPSIYSLSSLEY------ISLSHNNLSGTIPPCLGNFSTQLT 113
             +    +  NN     I P     +          I+      + T    L   S  ++
Sbjct: 86  NLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTIS 145

Query: 114 ILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFP------RYLADCTGLEVVNVG 167
            +   +     +        +       L + +              LA  T LE +   
Sbjct: 146 DISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIAT 205

Query: 168 NNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPR 227
           NN I D  P  +     L  L L  N+          +     L  +DL++N+ +   P 
Sbjct: 206 NNQISDITPLGIL--TNLDELSLNGNQLKDI----GTLASLTNLTDLDLANNQISNLAPL 259

Query: 228 WIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQ 287
                L  +  +       +          +      +  D+     +   T + L  N 
Sbjct: 260 SGLTKLTEL-KLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN 318

Query: 288 FQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIP 341
                P  +     L  L  ++N ++     S AN+  +  L    N++    P
Sbjct: 319 ISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 59.2 bits (142), Expect = 2e-10
 Identities = 38/215 (17%), Positives = 72/215 (33%), Gaps = 38/215 (17%)

Query: 23  YLDISNNFLTQI-EQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSI 81
            L  +NN ++ I       N+  L+L  N ++                          ++
Sbjct: 201 SLIATNNQISDITPLGILTNLDELSLNGNQLKD-----------------------IGTL 237

Query: 82  YSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLG 141
            SL++L  + L++N +S   P       T+LT L L  N +   I       +     L 
Sbjct: 238 ASLTNLTDLDLANNQISNLAPLS---GLTKLTELKLGANQISN-ISPLAGLTALTNLELN 293

Query: 142 LNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCE 201
            N  +        +++   L  + +  N I D  P  + SL  L+ L   +N+       
Sbjct: 294 ENQLE----DISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDVSSL 347

Query: 202 VNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETM 236
            N       +  +   HN+ +   P      +  +
Sbjct: 348 AN----LTNINWLSAGHNQISDLTPLANLTRITQL 378

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 56.2 bits (134), Expect = 2e-09
 Identities = 29/121 (23%), Positives = 48/121 (39%), Gaps = 8/121 (6%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTI-LVP 59
           L  N+I      +      +       N           KN+T L L  N I     +  
Sbjct: 270 LGANQISNISPLAGLTALTN--LELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSS 327

Query: 60  PPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNN 119
               +   F+NNK+      S+ +L+++ ++S  HN +S   P  L N  T++T L LN+
Sbjct: 328 LTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANL-TRITQLGLND 382

Query: 120 N 120
            
Sbjct: 383 Q 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 51.2 bits (121), Expect = 8e-08
 Identities = 47/245 (19%), Positives = 79/245 (32%), Gaps = 63/245 (25%)

Query: 66  FLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGR 125
            + +NN++    P  I +  +L+ +SL+ N L       L +  T LT L L NN +   
Sbjct: 202 LIATNNQISDITPLGILT--NLDELSLNGNQLKD--IGTLASL-TNLTDLDLANNQISNL 256

Query: 126 IPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGL 185
            P    +G   L  L L +N++    P  LA  T L  + +  N + D  P    +L  L
Sbjct: 257 APL---SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS--NLKNL 309

Query: 186 KILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSD 245
             L L  N         +       L+ +  ++N+ +         SL  + N+      
Sbjct: 310 TYLTLYFNNISDISPVSS----LTKLQRLFFANNKVSDV------SSLANLTNI------ 353

Query: 246 GLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVL 305
                                              +    NQ     P  L +   +  L
Sbjct: 354 ---------------------------------NWLSAGHNQISDLTP--LANLTRITQL 378

Query: 306 NLSHN 310
            L+  
Sbjct: 379 GLNDQ 383

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 74.3 bits (181), Expect = 1e-15
 Identities = 49/276 (17%), Positives = 89/276 (32%), Gaps = 18/276 (6%)

Query: 70  NNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDA 129
           ++    ++P  +        + L +N ++        N    L  L L NN +    P A
Sbjct: 18  SDLGLEKVPKDLPP--DTALLDLQNNKITEIKDGDFKNL-KNLHTLILINNKISKISPGA 74

Query: 130 FANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILV 189
           FA     L  L L+ N+L+    +       L    V  N I     S    L  + ++ 
Sbjct: 75  FAPLVK-LERLYLSKNQLKELPEKMPKTLQEL---RVHENEITKVRKSVFNGLNQMIVVE 130

Query: 190 LRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETM---KNVDEKGSDG 246
           L +N       E       + L  I ++    T  +P+ +  SL  +    N   K    
Sbjct: 131 LGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPSLTELHLDGNKITKVDAA 189

Query: 247 LYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLN 306
                           ++   D            + L++N+   ++P  L D K + V+ 
Sbjct: 190 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVY 248

Query: 307 LSHNGLTGSIPVSFA------NMIVLESLDLSSNKL 336
           L +N ++      F              + L SN +
Sbjct: 249 LHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 71.2 bits (173), Expect = 1e-14
 Identities = 47/284 (16%), Positives = 83/284 (29%), Gaps = 20/284 (7%)

Query: 60  PPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNN 119
           PP T      NNK+         +L +L  + L +N +S   P        +L  L+L+ 
Sbjct: 30  PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPL-VKLERLYLSK 88

Query: 120 NYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWL 179
           N L+  +P+       +LR       K+R S    L     +E+        G       
Sbjct: 89  NQLKE-LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI-ENGAF 146

Query: 180 GSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNV 239
             +  L  + +        +  +   L   +L  + L  N+ T      +       K  
Sbjct: 147 QGMKKLSYIRIADTN----ITTIPQGL-PPSLTELHLDGNKITKVDAASLKGLNNLAKLG 201

Query: 240 DEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRI----ITIFTTIDLSSNQFQG----- 290
               S      G          + +    LV              + L +N         
Sbjct: 202 LSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSND 261

Query: 291 -EIPQVLGDFKSLIVLNLSHNGLTGS--IPVSFANMIVLESLDL 331
              P       S   ++L  N +      P +F  + V  ++ L
Sbjct: 262 FCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.3 bits (124), Expect = 3e-08
 Identities = 46/246 (18%), Positives = 75/246 (30%), Gaps = 35/246 (14%)

Query: 102 PPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGL 161
           P C       L ++  ++  L+ ++P        D   L L +NK+         +   L
Sbjct: 2   PVCPFRCQCHLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNL 57

Query: 162 EVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYG---PLCEVNIMLPFEALRIIDLSH 218
             + + NN I    P     L  L+ L L  N+       + +    L      I  +  
Sbjct: 58  HTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRK 117

Query: 219 NEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIF 278
           + F   L + I V L T         +G +                          +   
Sbjct: 118 SVF-NGLNQMIVVELGTNPLKSSGIENGAFQG------------------------MKKL 152

Query: 279 TTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHG 338
           + I ++       IPQ  G   SL  L+L  N +T     S   +  L  L LS N +  
Sbjct: 153 SYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 209

Query: 339 RIPEQF 344
                 
Sbjct: 210 VDNGSL 215

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.3 bits (111), Expect = 1e-06
 Identities = 26/137 (18%), Positives = 52/137 (37%), Gaps = 5/137 (3%)

Query: 16  QRWKSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTI---LVPPPSTRAFLFSNNK 72
           Q  K L+Y+ I++  +T I Q    ++T L+L  N I       L    +      S N 
Sbjct: 147 QGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 206

Query: 73  LFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFAN 132
           +      S+ +   L  + L++N L         +    + +++L+NN +     + F  
Sbjct: 207 ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKY--IQVVYLHNNNISAIGSNDFCP 264

Query: 133 GSCDLRSLGLNSNKLRG 149
              + +    +   L  
Sbjct: 265 PGYNTKKASYSGVSLFS 281

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.1 bits (87), Expect = 0.001
 Identities = 22/125 (17%), Positives = 43/125 (34%), Gaps = 10/125 (8%)

Query: 9   RISKSDSQRWKSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTI-----LVPPPST 63
            I+        SLT L +  N +T+++    K +  L     +           +     
Sbjct: 161 NITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH 220

Query: 64  RAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSG-----TIPPCLGNFSTQLTILHLN 118
              L  NN    ++P  +     ++ + L +NN+S        PP         + + L 
Sbjct: 221 LRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLF 280

Query: 119 NNYLQ 123
           +N +Q
Sbjct: 281 SNPVQ 285

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.7 bits (153), Expect = 4e-12
 Identities = 44/317 (13%), Positives = 83/317 (26%), Gaps = 47/317 (14%)

Query: 22  TYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSI 81
                    L  +          + L                       N++      S 
Sbjct: 14  VTTSCPQQGLQAVPVGIPAASQRIFL---------------------HGNRISHVPAASF 52

Query: 82  YSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLG 141
            +  +L  + L  N L+          +    +   +N  L+   P  F      L +L 
Sbjct: 53  RACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG-LGRLHTLH 111

Query: 142 LNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCE 201
           L+   L+   P        L+ + + +N +          L  L  L L  NR       
Sbjct: 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER 171

Query: 202 VNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVT 261
               L   +L  + L  N      P   F  L  +  +    ++   +  E      +  
Sbjct: 172 AFRGLH--SLDRLLLHQNRVAHVHPHA-FRDLGRLMTLYLFANNLSALPTEALAPLRA-- 226

Query: 262 VTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFA 321
                              + L+ N +  +       +  L     S + +  S+P   A
Sbjct: 227 ----------------LQYLRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVPCSLPQRLA 269

Query: 322 NMIVLESLDLSSNKLHG 338
              +     L++N L G
Sbjct: 270 GRDL---KRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (134), Expect = 1e-09
 Identities = 37/212 (17%), Positives = 69/212 (32%), Gaps = 11/212 (5%)

Query: 19  KSLTYLDISNNFLTQIEQHPWKNITVLNL-------QNNTIQGTILVPPPSTRAFLFSNN 71
            +   + +  N ++ +    ++    L +                       +  L  N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 72  KLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFA 131
           +L    P + + L  L  + L        + P L      L  L+L +N LQ    D F 
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150

Query: 132 NGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLR 191
           +   +L  L L+ N++     R       L+ + +  N +    P     L  L  L L 
Sbjct: 151 D-LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209

Query: 192 SNRFYGPLCEVNIMLPFEALRIIDLSHNEFTG 223
           +N           + P  AL+ + L+ N +  
Sbjct: 210 ANNLSALPT--EALAPLRALQYLRLNDNPWVC 239

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (125), Expect = 2e-08
 Identities = 41/285 (14%), Positives = 78/285 (27%), Gaps = 47/285 (16%)

Query: 60  PPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNN 119
           P +++      N++      S  +  +L  + L  N L+          +    +   +N
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 120 NYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWL 179
             L+   P  F      L +L L+   L+   P        L+ + + +N +        
Sbjct: 91  AQLRSVDPATFHG-LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF 149

Query: 180 GSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNV 239
             L  L  L L  NR           L   +L  + L  N      P             
Sbjct: 150 RDLGNLTHLFLHGNRISSVPERAFRGLH--SLDRLLLHQNRVAHVHPHAFR--------- 198

Query: 240 DEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDF 299
                                              +    T+ L +N       + L   
Sbjct: 199 ----------------------------------DLGRLMTLYLFANNLSALPTEALAPL 224

Query: 300 KSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQF 344
           ++L  L L+ N               L+    SS+++   +P++ 
Sbjct: 225 RALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRL 268

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 4e-04
 Identities = 25/158 (15%), Positives = 46/158 (29%), Gaps = 11/158 (6%)

Query: 211 LRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLV 270
            + I L  N  +  +P   F +   +  +    +    +          +       +  
Sbjct: 34  SQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 271 LKRIITIF-------TTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANM 323
           L+ +            T+ L     Q   P +     +L  L L  N L      +F ++
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152

Query: 324 IVLESLDLSSNKLHGRIPEQFVDAEICSSFARPDLYTN 361
             L  L L  N++       F       S  R  L+ N
Sbjct: 153 GNLTHLFLHGNRISSVPERAFRG---LHSLDRLLLHQN 187

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.6 bits (140), Expect = 2e-10
 Identities = 35/281 (12%), Positives = 87/281 (30%), Gaps = 25/281 (8%)

Query: 90  ISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRG 149
           + L+  NL   +   L   S  +       +++   + + F+     ++ + L+++ +  
Sbjct: 5   LDLTGKNLHPDVTGRL--LSQGVIAFRCPRSFMDQPLAEHFSPFR--VQHMDLSNSVIEV 60

Query: 150 -SFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPF 208
            +    L+ C+ L+ +++    + D   + L     L  L L     +       ++   
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120

Query: 209 EALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRD 268
             L  ++LS           + V+  +        S       + D              
Sbjct: 121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV--------- 171

Query: 269 LVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSH-NGLTGSIPVSFANMIVLE 327
              +R   +       S   + +  Q       L  L+LS    +     +    +  L+
Sbjct: 172 ---RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLK 228

Query: 328 SLDLSSN-------KLHGRIPEQFVDAEICSSFARPDLYTN 361
           +L +           L   +P   ++    ++ ARP +   
Sbjct: 229 TLQVFGIVPDGTLQLLKEALPHLQINCSHFTTIARPTIGNK 269

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (85), Expect = 0.002
 Identities = 9/67 (13%), Positives = 26/67 (38%), Gaps = 2/67 (2%)

Query: 279 TTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHG 338
            T+DL+      ++   L   + +I      + +   +   F+    ++ +DLS++ +  
Sbjct: 3   QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAEHFS-PFRVQHMDLSNSVIEV 60

Query: 339 RIPEQFV 345
                 +
Sbjct: 61  STLHGIL 67

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (124), Expect = 2e-08
 Identities = 28/206 (13%), Positives = 54/206 (26%), Gaps = 4/206 (1%)

Query: 132 NGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLR 191
           +       +  +   L  + P  L       ++++  N++     + L     L  L L 
Sbjct: 7   SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 192 SNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQG 251
                    +  + +        +   +             L+   N       G     
Sbjct: 64  RAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123

Query: 252 EEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNG 311
            E          +K     L         + L++N        +L   ++L  L L  N 
Sbjct: 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183

Query: 312 LTGSIPVSFANMIVLESLDLSSNKLH 337
           L  +IP  F    +L    L  N   
Sbjct: 184 LY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (100), Expect = 2e-05
 Identities = 38/218 (17%), Positives = 69/218 (31%), Gaps = 10/218 (4%)

Query: 17  RWKSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQ 76
           +  S   ++     LT +     K+ T+L+L  N +    L            N  L   
Sbjct: 8   KVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLN--LDRA 65

Query: 77  IPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCD 136
               +    +L  +     + +      L   +     +   +      +P     G  +
Sbjct: 66  ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE 125

Query: 137 LRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFY 196
           L+ L L  N+L+   P  L     LE +++ NN + +     L  L  L  L+L+ N  Y
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185

Query: 197 GPLCEVNIMLPFEALRIIDLSHNEFT-----GFLPRWI 229
                         L    L  N +       +  RW+
Sbjct: 186 TIPKG---FFGSHLLPFAFLHGNPWLCNCEILYFRRWL 220

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 2e-04
 Identities = 36/192 (18%), Positives = 60/192 (31%), Gaps = 8/192 (4%)

Query: 157 DCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDL 216
                  VN     +    P  L       IL L  N  Y        ++P+  L  ++L
Sbjct: 8   KVASHLEVNCDKRNL-TALPPDLP--KDTTILHLSENLLYTFSLAT--LMPYTRLTQLNL 62

Query: 217 SHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRI-- 274
              E T          L T+     +      +               +   L L  +  
Sbjct: 63  DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122

Query: 275 ITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSN 334
           +     + L  N+ +   P +L     L  L+L++N LT         +  L++L L  N
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182

Query: 335 KLHGRIPEQFVD 346
            L+  IP+ F  
Sbjct: 183 SLY-TIPKGFFG 193

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (116), Expect = 3e-07
 Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 5/74 (6%)

Query: 279 TTIDLSSNQFQGE-IPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIV----LESLDLSS 333
            ++D+   +       ++L   +   V+ L   GLT +     ++ +     L  L+L S
Sbjct: 5   QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRS 64

Query: 334 NKLHGRIPEQFVDA 347
           N+L        +  
Sbjct: 65  NELGDVGVHCVLQG 78

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (107), Expect = 4e-06
 Identities = 14/79 (17%), Positives = 26/79 (32%), Gaps = 9/79 (11%)

Query: 279 TTIDLSSNQFQGE----IPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMI-----VLESL 329
             + L+           +   L    SL  L+LS+N L  +  +     +     +LE L
Sbjct: 372 RVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQL 431

Query: 330 DLSSNKLHGRIPEQFVDAE 348
            L        + ++    E
Sbjct: 432 VLYDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 3e-05
 Identities = 23/135 (17%), Positives = 39/135 (28%), Gaps = 28/135 (20%)

Query: 18  WKSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQI 77
             +    D     L Q    P   + VL L +  +  +                     +
Sbjct: 347 ISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSC-----------------SSL 389

Query: 78  PPSIYSLSSLEYISLSHNNLSGTIPPCLG----NFSTQLTILHLNNNYLQGRIPDAFANG 133
             ++ +  SL  + LS+N L       L          L  L L + Y    + D     
Sbjct: 390 AATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDR---- 445

Query: 134 SCDLRSLGLNSNKLR 148
              L++L  +   LR
Sbjct: 446 ---LQALEKDKPSLR 457

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 4e-05
 Identities = 12/76 (15%), Positives = 25/76 (32%), Gaps = 3/76 (3%)

Query: 86  SLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANG---SCDLRSLGL 142
            ++ + +    LS      L     Q  ++ L++  L        ++    +  L  L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 143 NSNKLRGSFPRYLADC 158
            SN+L       +   
Sbjct: 63  RSNELGDVGVHCVLQG 78

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (97), Expect = 6e-05
 Identities = 16/110 (14%), Positives = 30/110 (27%), Gaps = 25/110 (22%)

Query: 20  SLTYLDISNNFLTQIEQHPW----KNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFG 75
            +  LDI    L+           +   V+ L +  +                       
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL-----------------TEARCK 45

Query: 76  QIPPSIYSLSSLEYISLSHNNLSGT----IPPCLGNFSTQLTILHLNNNY 121
            I  ++    +L  ++L  N L       +   L   S ++  L L N  
Sbjct: 46  DISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 2e-04
 Identities = 11/101 (10%), Positives = 23/101 (22%), Gaps = 4/101 (3%)

Query: 109 STQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRG----SFPRYLADCTGLEVV 164
           S  +  L +    L               + + L+   L           L     L  +
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 165 NVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIM 205
           N+ +N +GD     +          ++              
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC 101

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.001
 Identities = 12/68 (17%), Positives = 18/68 (26%), Gaps = 9/68 (13%)

Query: 279 TTIDLSSNQFQGE----IPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIV-----LESL 329
             + L            I   L    +L  LNL  N L           +      ++ L
Sbjct: 30  QVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKL 89

Query: 330 DLSSNKLH 337
            L +  L 
Sbjct: 90  SLQNCCLT 97

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.002
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 4/53 (7%)

Query: 299 FKSLIVLNLSHNGLTGSIPVSFANMIV----LESLDLSSNKLHGRIPEQFVDA 347
              L VL L+   ++ S   S A  ++    L  LDLS+N L      Q V++
Sbjct: 368 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES 420

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.9 bits (112), Expect = 8e-07
 Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 11/98 (11%)

Query: 68  FSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIP 127
           +  N    +I        SLE +++S+N L   +P         L  L  + N+L   +P
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR----LERLIASFNHLA-EVP 320

Query: 128 DAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVN 165
           +   N    L+ L +  N LR  FP        L + +
Sbjct: 321 ELPQN----LKQLHVEYNPLR-EFPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.1 bits (110), Expect = 1e-06
 Identities = 41/330 (12%), Positives = 87/330 (26%), Gaps = 32/330 (9%)

Query: 19  KSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIP 78
           +    L+++N  L+ + + P  ++  L    N++   +   P S ++ L  NN L     
Sbjct: 38  RQAHELELNNLGLSSLPELP-PHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSD 95

Query: 79  PSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGR------IPDAFAN 132
             +  L     +S +       +          +    L                +    
Sbjct: 96  --LPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLE 153

Query: 133 GSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRS 192
              +L++L   +     +          L + ++            L +LP L  +   +
Sbjct: 154 ELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADN 213

Query: 193 NRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGE 252
           N           +              E    L              +   +        
Sbjct: 214 NLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASS 273

Query: 253 EDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGL 312
            +                   +      +++S+N+   E+P        L  L  S N L
Sbjct: 274 NEIRSLC-------------DLPPSLEELNVSNNKLI-ELP---ALPPRLERLIASFNHL 316

Query: 313 TGSIPVSFANMIVLESLDLSSNKLHGRIPE 342
              +P    N   L+ L +  N L    P+
Sbjct: 317 A-EVPELPQN---LKQLHVEYNPLRE-FPD 341

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.8 bits (104), Expect = 9e-06
 Identities = 17/104 (16%), Positives = 34/104 (32%), Gaps = 31/104 (29%)

Query: 16  QRWKSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFG 75
               SL  L++SNN L ++   P   +  L    N +                       
Sbjct: 281 DLPPSLEELNVSNNKLIELPALP-PRLERLIASFNHLA---------------------- 317

Query: 76  QIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNN 119
           ++P       +L+ + + +N L    P    +    +  L +N+
Sbjct: 318 EVPE---LPQNLKQLHVEYNPLR-EFPDIPES----VEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 6/54 (11%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQG 54
           +SNN++   +          L  L  S N L ++ + P +N+  L+++ N ++ 
Sbjct: 291 VSNNKLI-ELPAL----PPRLERLIASFNHLAEVPELP-QNLKQLHVEYNPLRE 338

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 48.0 bits (112), Expect = 9e-07
 Identities = 32/294 (10%), Positives = 61/294 (20%), Gaps = 34/294 (11%)

Query: 76  QIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNF---STQLTILHLNNNYLQGRIPDAFAN 132
            +   +    S++ I LS N +       L         L I   ++ +   R+ D    
Sbjct: 22  SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTG-RVKDEIPE 80

Query: 133 GSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRS 192
               L    L   KL        A     +   +                 GL       
Sbjct: 81  ALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAK 140

Query: 193 NRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGE 252
                    VN            +             +        +             
Sbjct: 141 IARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRP 200

Query: 253 EDYYQDSVTVTVKGRDLVL-------------------KRIITIFTTIDLSSNQFQGEIP 293
           E      +      ++L +                    +       + L+         
Sbjct: 201 EGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA 260

Query: 294 QVLGD------FKSLIVLNLSHNGLTGSIPVSFANMIV-----LESLDLSSNKL 336
             + D         L  L L +N +      +   +I      L  L+L+ N+ 
Sbjct: 261 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 314

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.9 bits (103), Expect = 2e-06
 Identities = 17/103 (16%), Positives = 38/103 (36%), Gaps = 1/103 (0%)

Query: 23  YLDISNNFLTQIEQ-HPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSI 81
            L +++  LT +        +T L+L +N ++             +   +    +    +
Sbjct: 2   VLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGV 61

Query: 82  YSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQG 124
            +L  L+ + L +N L  +          +L +L+L  N L  
Sbjct: 62  ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.5 bits (89), Expect = 2e-04
 Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 8/108 (7%)

Query: 89  YISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLR 148
            + L+H +L  T+   L      +T L L++N L+   P   A    ++      ++   
Sbjct: 2   VLHLAHKDL--TVLCHLEQL-LLVTHLDLSHNRLRALPPALAALRCLEVL----QASDNA 54

Query: 149 GSFPRYLADCTGLEVVNVGNNMIGDT-FPSWLGSLPGLKILVLRSNRF 195
                 +A+   L+ + + NN +  +     L S P L +L L+ N  
Sbjct: 55  LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.2 bits (88), Expect = 3e-04
 Identities = 18/121 (14%), Positives = 40/121 (33%), Gaps = 9/121 (7%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPP 60
           L++  +         ++   +T+LD+S+N L  +         +  LQ +      +   
Sbjct: 5   LAHKDLT---VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGV 61

Query: 61  PSTRAF----LFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSG--TIPPCLGNFSTQLTI 114
            +        L +N          + S   L  ++L  N+L     I   L      ++ 
Sbjct: 62  ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS 121

Query: 115 L 115
           +
Sbjct: 122 I 122

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.2 bits (103), Expect = 6e-06
 Identities = 32/192 (16%), Positives = 65/192 (33%), Gaps = 13/192 (6%)

Query: 142 LNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCE 201
           L    +  +      +   ++ +   N+ I       +  LP +  L L  N+       
Sbjct: 31  LKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKPL 86

Query: 202 VNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVT 261
            N  L       +D +  +    L     +   ++++      +GL    + +       
Sbjct: 87  AN--LKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNN 144

Query: 262 VTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFA 321
                 D+ +   +T   T+ L  NQ    +P  L     L  L LS N ++  +  + A
Sbjct: 145 KI---TDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS-DLR-ALA 197

Query: 322 NMIVLESLDLSS 333
            +  L+ L+L S
Sbjct: 198 GLKNLDVLELFS 209

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 43.6 bits (101), Expect = 1e-05
 Identities = 27/179 (15%), Positives = 56/179 (31%), Gaps = 8/179 (4%)

Query: 20  SLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQI-- 77
             T +D +   L +I +    + T L L +N +              L        Q+  
Sbjct: 9   EGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG 68

Query: 78  -PPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCD 136
             P+ +  +S         N    I   +     QL  L+L +N +   +P +F + +  
Sbjct: 69  IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSL 128

Query: 137 LRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRF 195
                 ++         + A+    + +N G              +  ++I  L  + F
Sbjct: 129 TSLNLASNPFNCNCHLAWFAEWLRKKSLN-GGAARCGAPS----KVRDVQIKDLPHSEF 182

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.8 bits (91), Expect = 2e-04
 Identities = 32/181 (17%), Positives = 59/181 (32%), Gaps = 9/181 (4%)

Query: 43  TVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIP 102
           T ++     ++      P  T   L ++N+L       ++             N    I 
Sbjct: 11  TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE 70

Query: 103 PCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLE 162
           P     ++ +  L L  N ++      F      L++L L  N++    P        L 
Sbjct: 71  PNAFEGASHIQELQLGENKIKEISNKMFLGLHQ-LKTLNLYDNQISCVMPGSFEHLNSLT 129

Query: 163 VVNVGNN-MIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEF 221
            +N+ +N    +   +W       K L   + R   P            ++I DL H+EF
Sbjct: 130 SLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPS-------KVRDVQIKDLPHSEF 182

Query: 222 T 222
            
Sbjct: 183 K 183

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (96), Expect = 3e-05
 Identities = 20/140 (14%), Positives = 41/140 (29%), Gaps = 6/140 (4%)

Query: 69  SNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPD 128
           + +         +    +L  + + +      +         +L  L +  + L+   PD
Sbjct: 16  TRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD 74

Query: 129 AFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKIL 188
           AF       R      N L     + +   +  E+V  GN +       WL       + 
Sbjct: 75  AFHFTPRLSRLNLSF-NALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLG 133

Query: 189 VLRSNRFY----GPLCEVNI 204
            +   +      GPL  +  
Sbjct: 134 GVPEQKLQCHGQGPLAHMPN 153

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 0.002
 Identities = 21/118 (17%), Positives = 39/118 (33%), Gaps = 3/118 (2%)

Query: 79  PSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLR 138
           P          +  + +         L   +  LT L++ N      +      G  +LR
Sbjct: 2   PDACCPHGSSGLRCTRDGAL-DSLHHLPG-AENLTELYIENQQHLQHLELRDLRGLGELR 59

Query: 139 SLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFY 196
           +L +  + LR   P        L  +N+  N + ++          L+ LVL  N  +
Sbjct: 60  NLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL-ESLSWKTVQGLSLQELVLSGNPLH 116

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 5e-05
 Identities = 25/251 (9%), Positives = 60/251 (23%), Gaps = 24/251 (9%)

Query: 86  SLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSN 145
           S        + ++  IP    +       L      L+     AF+      +       
Sbjct: 9   SNRVFLCQESKVT-EIPS---DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKI------ 58

Query: 146 KLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIM 205
                    ++    LEV+                      + +        P  +  ++
Sbjct: 59  --------EISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLI 110

Query: 206 LPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVK 265
                  + D+        +   I  ++              ++    +     +     
Sbjct: 111 SNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS-----FVGLSFESVILWLNKNGI 165

Query: 266 GRDLVLKRIITIFTTIDLSSNQFQGEIPQ-VLGDFKSLIVLNLSHNGLTGSIPVSFANMI 324
                     T    ++LS N    E+P  V       ++L++S   +         N+ 
Sbjct: 166 QEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLK 225

Query: 325 VLESLDLSSNK 335
            L +    + K
Sbjct: 226 KLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (83), Expect = 0.003
 Identities = 15/83 (18%), Positives = 26/83 (31%), Gaps = 3/83 (3%)

Query: 279 TTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHG 338
                  ++   EIP  L   ++ I L      L      +F+    LE +++S N +  
Sbjct: 11  RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 67

Query: 339 RIPEQFVDAEICSSFARPDLYTN 361
            I              R +   N
Sbjct: 68  VIEADVFSNLPKLHEIRIEKANN 90

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 3e-04
 Identities = 27/223 (12%), Positives = 59/223 (26%), Gaps = 16/223 (7%)

Query: 110 TQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNN 169
                +    + +   +  A  +G   + +L      +       +     L  + + +N
Sbjct: 19  ANAIKIAAGKSNVTDTVTQADLDG---ITTLSAFGTGVTTIEG--VQYLNNLIGLELKDN 73

Query: 170 MIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWI 229
            I D  P    +      L     +    +  +  +   +             G     +
Sbjct: 74  QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133

Query: 230 FVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQ 289
                         +    +Q           +T       L       TT+    N+  
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKL-------TTLKADDNKIS 186

Query: 290 GEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLS 332
              P  L    +LI ++L +N ++   P   AN   L  + L+
Sbjct: 187 DISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 3e-04
 Identities = 39/219 (17%), Positives = 79/219 (36%), Gaps = 19/219 (8%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQHPW-KNITVLNLQNNTIQGTILVP 59
              + +   ++++D      +T L      +T IE   +  N+  L L++N I       
Sbjct: 26  AGKSNVTDTVTQAD---LDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQIT------ 76

Query: 60  PPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNN 119
             +    L    +L     P     +     S+   +L+ T    +   +    +  L  
Sbjct: 77  DLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYL 136

Query: 120 NYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWL 179
           +  Q       A  +        +    + S    LA+ + L  +   +N I D   S L
Sbjct: 137 DLNQITNISPLAGLTNLQYL---SIGNAQVSDLTPLANLSKLTTLKADDNKISD--ISPL 191

Query: 180 GSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSH 218
            SLP L  + L++N+    + +V+ +     L I+ L++
Sbjct: 192 ASLPNLIEVHLKNNQ----ISDVSPLANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 7e-04
 Identities = 28/202 (13%), Positives = 58/202 (28%), Gaps = 13/202 (6%)

Query: 140 LGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPL 199
           +    + +  +     AD  G+  ++     +       +  L  L  L L+ N+     
Sbjct: 24  IAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLA 79

Query: 200 CEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDS 259
              N       L  I                  L+++K +D   +    +          
Sbjct: 80  PLKN-------LTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 260 VTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVS 319
           V      +   +  +  +     LS    Q      L +   L  L    N ++   P  
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-- 190

Query: 320 FANMIVLESLDLSSNKLHGRIP 341
            A++  L  + L +N++    P
Sbjct: 191 LASLPNLIEVHLKNNQISDVSP 212

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.2 bits (82), Expect = 0.003
 Identities = 35/189 (18%), Positives = 63/189 (33%), Gaps = 15/189 (7%)

Query: 1   LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ-HPWKNITVLNLQNNTIQGTILVP 59
           L    +   +S++D      +T L      +  I+      N+T +N  NN +     + 
Sbjct: 25  LGKTNVTDTVSQTD---LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLK 81

Query: 60  PPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNN 119
             +    +  NN     I P     +       ++          L N    L  L L++
Sbjct: 82  NLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN----LNRLELSS 137

Query: 120 NYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWL 179
           N +      +       L         L+      LA+ T LE +++ +N + D   S L
Sbjct: 138 NTISDISALSGLTSLQQLNFSSNQVTDLKP-----LANLTTLERLDISSNKVSD--ISVL 190

Query: 180 GSLPGLKIL 188
             L  L+ L
Sbjct: 191 AKLTNLESL 199

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	362
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.96
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.95
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.94
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.94
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.89
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.86
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.82
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.77
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.76
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.75
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.75
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.73
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.73
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.71
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.71
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.66
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.64
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.63
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.6
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.59
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.56
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.5
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.49
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.47
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.46
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.33
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.27
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.11
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.05
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.3
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.23
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.19
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.93
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.87
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.45

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.96  E-value=1.6e-27  Score=212.17  Aligned_cols=312  Identities=20%  Similarity=0.262  Sum_probs=204.8

Q ss_pred             CCCcccccCCccccccCCCCcEEEcCCCccccccc-CCcCCCcEEEccCCcCCCCC-CCCCCCccEEEccCcccccCCcc
Q 044176            2 SNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ-HPWKNITVLNLQNNTIQGTI-LVPPPSTRAFLFSNNKLFGQIPP   79 (362)
Q Consensus         2 ~~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~-~~~~~L~~L~l~~n~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~   79 (362)
                      ..+.++|.+..+   .+.+|+.|+++++.|+++.+ ..+++|++|++++|.+++.. +..+++|++|++++|.+.+.  .
T Consensus        30 ~~~~~~~~~~~~---~l~~l~~L~l~~~~I~~l~gl~~L~nL~~L~Ls~N~l~~l~~l~~L~~L~~L~L~~n~i~~i--~  104 (384)
T d2omza2          30 GKTNVTDTVSQT---DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADI--T  104 (384)
T ss_dssp             TCSSTTSEECHH---HHTTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--G
T ss_pred             CCCCCCCccCHH---HhCCCCEEECCCCCCCCccccccCCCCCEEeCcCCcCCCCccccCCcccccccccccccccc--c
Confidence            345566554442   24789999999999999876 67899999999999998865 56699999999999999854  3


Q ss_pred             cccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccC-----------------------------------
Q 044176           80 SIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQG-----------------------------------  124 (362)
Q Consensus        80 ~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~-----------------------------------  124 (362)
                      .++++++|+.|+++++.+++ ++... .. ..+.......+.+..                                   
T Consensus       105 ~l~~l~~L~~L~~~~~~~~~-~~~~~-~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (384)
T d2omza2         105 PLANLTNLTGLTLFNNQITD-IDPLK-NL-TNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLD  181 (384)
T ss_dssp             GGTTCTTCCEEECCSSCCCC-CGGGT-TC-TTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEE
T ss_pred             cccccccccccccccccccc-ccccc-cc-ccccccccccccccccccccccccccccccccccchhhhhcccccccccc
Confidence            48899999999999998873 22211 11 223333333222210                                   


Q ss_pred             ------cchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCc
Q 044176          125 ------RIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGP  198 (362)
Q Consensus       125 ------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  198 (362)
                            .....+. .+++++.+.+++|.+++..+  +..+++|+.+++++|.+++.  ..+..+++|+.+++++|.+.+.
T Consensus       182 ~~~~~~~~~~~~~-~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~  256 (384)
T d2omza2         182 ISSNKVSDISVLA-KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNL  256 (384)
T ss_dssp             CCSSCCCCCGGGG-GCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC
T ss_pred             ccccccccccccc-cccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCC
Confidence                  0111122 22456666666666653322  34456666666666666432  2355566666666666665543


Q ss_pred             cccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccc
Q 044176          199 LCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIF  278 (362)
Q Consensus       199 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  278 (362)
                      .+    +..+++|++++++++.+.+..+   +..+..++.+....+....                    ......++++
T Consensus       257 ~~----~~~~~~L~~L~l~~~~l~~~~~---~~~~~~l~~l~~~~n~l~~--------------------~~~~~~~~~l  309 (384)
T d2omza2         257 AP----LSGLTKLTELKLGANQISNISP---LAGLTALTNLELNENQLED--------------------ISPISNLKNL  309 (384)
T ss_dssp             GG----GTTCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCSC--------------------CGGGGGCTTC
T ss_pred             Cc----ccccccCCEeeccCcccCCCCc---ccccccccccccccccccc--------------------ccccchhccc
Confidence            22    2445666666666666653322   2333444444433332111                    1123347889


Q ss_pred             cEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhccCCCcc
Q 044176          279 TTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFARPDL  358 (362)
Q Consensus       279 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~~~~l  358 (362)
                      +.|++++|++++..  .+..+++|++|++++|++++ + ..+..+++|++|++++|++++..|  +.++++|+.|   ++
T Consensus       310 ~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l-~~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L---~L  380 (384)
T d2omza2         310 TYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-V-SSLANLTNINWLSAGHNQISDLTP--LANLTRITQL---GL  380 (384)
T ss_dssp             SEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEE---EC
T ss_pred             CeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-C-hhHcCCCCCCEEECCCCcCCCChh--hccCCCCCEe---eC
Confidence            99999999998653  37889999999999999984 3 369999999999999999996544  7777777777   88


Q ss_pred             ccCC
Q 044176          359 YTNA  362 (362)
Q Consensus       359 ~~n~  362 (362)
                      ++||
T Consensus       381 ~~Na  384 (384)
T d2omza2         381 NDQA  384 (384)
T ss_dssp             CCEE
T ss_pred             CCCc
Confidence            8886

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.95  E-value=7.1e-28  Score=208.49  Aligned_cols=249  Identities=27%  Similarity=0.369  Sum_probs=203.0

Q ss_pred             CCccEEEccCccccc--CCcccccCCCCCCEEEccc-CcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCc
Q 044176           61 PSTRAFLFSNNKLFG--QIPPSIYSLSSLEYISLSH-NNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDL  137 (362)
Q Consensus        61 ~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~L~~-~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L  137 (362)
                      .+++.|+++++.+.+  .+|+.++++++|++|+|++ |++++.+|..++++ ++|++|++++|++.+..+..+... +.|
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L-~~L~~L~Ls~N~l~~~~~~~~~~~-~~L  127 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKL-TQLHYLYITHTNVSGAIPDFLSQI-KTL  127 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGC-TTCSEEEEEEECCEEECCGGGGGC-TTC
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccc-cccchhhhccccccccccccccch-hhh
Confidence            357788888887775  4788999999999999997 78888899999998 799999999999986666666654 899


Q ss_pred             cEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhccCCCCC-CeEEccCCcCCCccccccccccCCcccEEec
Q 044176          138 RSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGL-KILVLRSNRFYGPLCEVNIMLPFEALRIIDL  216 (362)
Q Consensus       138 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L-~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l  216 (362)
                      +++++++|.+...+|..+..++.++.+++++|.+.+..|..+..+..+ +.++++.|++.+..+...  ..+ ....+++
T Consensus       128 ~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~--~~l-~~~~l~l  204 (313)
T d1ogqa_         128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF--ANL-NLAFVDL  204 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG--GGC-CCSEEEC
T ss_pred             cccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccc--ccc-ccccccc
Confidence            999999999988889999999999999999999988888888887775 789999998877555443  333 3456888


Q ss_pred             cCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhh
Q 044176          217 SHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVL  296 (362)
Q Consensus       217 ~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  296 (362)
                      ..+...+..+....                                           .+++++.+++++|.+.+.++ .+
T Consensus       205 ~~~~~~~~~~~~~~-------------------------------------------~~~~l~~l~~~~~~l~~~~~-~~  240 (313)
T d1ogqa_         205 SRNMLEGDASVLFG-------------------------------------------SDKNTQKIHLAKNSLAFDLG-KV  240 (313)
T ss_dssp             CSSEEEECCGGGCC-------------------------------------------TTSCCSEEECCSSEECCBGG-GC
T ss_pred             cccccccccccccc-------------------------------------------cccccccccccccccccccc-cc
Confidence            87777665554311                                           15678999999999986554 57


Q ss_pred             cCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhccCCCccccCC
Q 044176          297 GDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFARPDLYTNA  362 (362)
Q Consensus       297 ~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~~~~l~~n~  362 (362)
                      +.+++|+.|++++|++++.+|+.+.++++|++|++++|++++.+|+ +.   +|+.|+..+++||+
T Consensus       241 ~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~---~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GG---NLQRFDVSAYANNK  302 (313)
T ss_dssp             CCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-ST---TGGGSCGGGTCSSS
T ss_pred             ccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cc---cCCCCCHHHhCCCc
Confidence            8889999999999999999999999999999999999999988885 44   44555556888874

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=1.4e-24  Score=186.93  Aligned_cols=274  Identities=20%  Similarity=0.243  Sum_probs=212.6

Q ss_pred             CCcEEEcCCCcccccccCCcCCCcEEEccCCcCCCC---CCCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCc
Q 044176           20 SLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGT---ILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNN   96 (362)
Q Consensus        20 ~L~~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~   96 (362)
                      ..+.++.++.+++.+|..-.+++++|++++|.++..   .+..+++|++|++++|.+....|..|.++++|++|++++|+
T Consensus        11 ~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~   90 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ   90 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC
T ss_pred             cCCEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCc
Confidence            457789999999999886668899999999988764   45668999999999999998888899999999999999999


Q ss_pred             ccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCccc--CCCchhhhcCCCCcEEEccCCCCCCC
Q 044176           97 LSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLR--GSFPRYLADCTGLEVVNVGNNMIGDT  174 (362)
Q Consensus        97 ~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~  174 (362)
                      ++ .+|....   +.++.|++..|.+.. ++............+....+...  ...+..+..+++|+.+++.+|.+...
T Consensus        91 l~-~l~~~~~---~~l~~L~~~~n~l~~-l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l  165 (305)
T d1xkua_          91 LK-ELPEKMP---KTLQELRVHENEITK-VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI  165 (305)
T ss_dssp             CS-BCCSSCC---TTCCEEECCSSCCCB-BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred             cC-cCccchh---hhhhhhhccccchhh-hhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcccc
Confidence            98 7877543   478999999999884 44443334467888888877543  23455788889999999999988543


Q ss_pred             cchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCcc
Q 044176          175 FPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEED  254 (362)
Q Consensus       175 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~  254 (362)
                       +..  ..++|++|++++|......+..  +..++.++.|++++|.+.+..+.. +.                       
T Consensus       166 -~~~--~~~~L~~L~l~~n~~~~~~~~~--~~~~~~l~~L~~s~n~l~~~~~~~-~~-----------------------  216 (305)
T d1xkua_         166 -PQG--LPPSLTELHLDGNKITKVDAAS--LKGLNNLAKLGLSFNSISAVDNGS-LA-----------------------  216 (305)
T ss_dssp             -CSS--CCTTCSEEECTTSCCCEECTGG--GTTCTTCCEEECCSSCCCEECTTT-GG-----------------------
T ss_pred             -Ccc--cCCccCEEECCCCcCCCCChhH--hhcccccccccccccccccccccc-cc-----------------------
Confidence             322  3678999999998877654433  477889999999999887544432 11                       


Q ss_pred             ccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhh------hhcCCCcCE
Q 044176          255 YYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVS------FANMIVLES  328 (362)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~------~~~~~~L~~  328 (362)
                                         .+++|+.|++++|+++ .+|..+..+++|+.|++++|+|+......      ...+++|+.
T Consensus       217 -------------------~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~  276 (305)
T d1xkua_         217 -------------------NTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSG  276 (305)
T ss_dssp             -------------------GSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSE
T ss_pred             -------------------ccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCE
Confidence                               1678999999999998 56778999999999999999998543333      356789999


Q ss_pred             EEccCCccc--ccCchhhhhh
Q 044176          329 LDLSSNKLH--GRIPEQFVDA  347 (362)
Q Consensus       329 L~l~~n~~~--~~~~~~~~~l  347 (362)
                      |++++|++.  ...|..|..+
T Consensus       277 L~L~~N~~~~~~~~~~~f~~~  297 (305)
T d1xkua_         277 VSLFSNPVQYWEIQPSTFRCV  297 (305)
T ss_dssp             EECCSSSSCGGGSCGGGGTTC
T ss_pred             EECCCCcCccCcCCHhHhccc
Confidence            999999875  2344455543

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.94  E-value=9e-27  Score=201.47  Aligned_cols=248  Identities=25%  Similarity=0.379  Sum_probs=206.7

Q ss_pred             CCCcEEEccCCcCCCCC-----CCCCCCccEEEccC-cccccCCcccccCCCCCCEEEcccCcccccCCCCccccccccc
Q 044176           40 KNITVLNLQNNTIQGTI-----LVPPPSTRAFLFSN-NKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLT  113 (362)
Q Consensus        40 ~~L~~L~l~~n~~~~~~-----~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~  113 (362)
                      .+++.|+++++.+.+..     +..+++|++|++++ |.+.+.+|..|+++++|++|++++|++.+..+..+... ..|+
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~-~~L~  128 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI-KTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGC-TTCC
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccch-hhhc
Confidence            36888999998887632     23389999999986 78888899999999999999999999996555556555 7899


Q ss_pred             EEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCC-cEEEccCCCCCCCcchhccCCCCCCeEEccC
Q 044176          114 ILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGL-EVVNVGNNMIGDTFPSWLGSLPGLKILVLRS  192 (362)
Q Consensus       114 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L-~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  192 (362)
                      .+++++|.+...+|..+... +.++++++++|.+.+.+|..+..+..+ +.+++++|++++..+..+..+.. ..+++..
T Consensus       129 ~l~l~~N~~~~~~p~~l~~l-~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~-~~l~l~~  206 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSISSL-PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL-AFVDLSR  206 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGC-TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC-SEEECCS
T ss_pred             ccccccccccccCchhhccC-cccceeecccccccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence            99999999888888888875 899999999999998889888888776 88999999998777777776654 4799998


Q ss_pred             CcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhh
Q 044176          193 NRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLK  272 (362)
Q Consensus       193 n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (362)
                      +...+..+...  ..+++++.++++++.+.+..+..  .                                         
T Consensus       207 ~~~~~~~~~~~--~~~~~l~~l~~~~~~l~~~~~~~--~-----------------------------------------  241 (313)
T d1ogqa_         207 NMLEGDASVLF--GSDKNTQKIHLAKNSLAFDLGKV--G-----------------------------------------  241 (313)
T ss_dssp             SEEEECCGGGC--CTTSCCSEEECCSSEECCBGGGC--C-----------------------------------------
T ss_pred             ccccccccccc--ccccccccccccccccccccccc--c-----------------------------------------
Confidence            88776555543  67889999999999887544421  0                                         


Q ss_pred             hhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCccc
Q 044176          273 RIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLH  337 (362)
Q Consensus       273 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~  337 (362)
                       .+++++.|++++|++++.+|..++.+++|++|+|++|++++.+|+ +.++++|+.+++++|+..
T Consensus       242 -~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l  304 (313)
T d1ogqa_         242 -LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCL  304 (313)
T ss_dssp             -CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEE
T ss_pred             -cccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCccc
Confidence             156799999999999999999999999999999999999987775 678899999999999843

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.92  E-value=2.6e-23  Score=184.64  Aligned_cols=290  Identities=23%  Similarity=0.294  Sum_probs=215.2

Q ss_pred             CCCCcccccCCccccccCCCCcEEEcCCCccccccc-CCcCCCcEEEccCCcCCCCC-CCCCCCccEEEccCcccccCCc
Q 044176            1 LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ-HPWKNITVLNLQNNTIQGTI-LVPPPSTRAFLFSNNKLFGQIP   78 (362)
Q Consensus         1 L~~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~-~~~~~L~~L~l~~n~~~~~~-~~~~~~L~~L~l~~~~~~~~~~   78 (362)
                      |+++.|+ .+. . +..+++|++|++++|+|+++++ ..+++|++|++++|.+.+.. +..+++|+.++++++.+.+..+
T Consensus        51 l~~~~I~-~l~-g-l~~L~nL~~L~Ls~N~l~~l~~l~~L~~L~~L~L~~n~i~~i~~l~~l~~L~~L~~~~~~~~~~~~  127 (384)
T d2omza2          51 ADRLGIK-SID-G-VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP  127 (384)
T ss_dssp             CCSSCCC-CCT-T-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG
T ss_pred             CCCCCCC-Ccc-c-cccCCCCCEEeCcCCcCCCCccccCCcccccccccccccccccccccccccccccccccccccccc
Confidence            4677787 553 2 4457999999999999999986 67899999999999998754 5669999999999988764322


Q ss_pred             ccccCCCCCCEEEcccCcccc-----------------------------------------cCCCCcccccccccEEEc
Q 044176           79 PSIYSLSSLEYISLSHNNLSG-----------------------------------------TIPPCLGNFSTQLTILHL  117 (362)
Q Consensus        79 ~~~~~l~~L~~L~L~~~~~~~-----------------------------------------~~~~~l~~~~~~L~~L~l  117 (362)
                        ......+.......+.+..                                         ........+ ++++.+++
T Consensus       128 --~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~l~l  204 (384)
T d2omza2         128 --LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKL-TNLESLIA  204 (384)
T ss_dssp             --GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGC-TTCSEEEC
T ss_pred             --ccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccc-cccceeec
Confidence              2233344444333332210                                         111223333 67899999


Q ss_pred             ccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCC
Q 044176          118 NNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYG  197 (362)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~  197 (362)
                      ++|.+.+..|.  . ..++|+++++++|.++. + ..+..+++|+.+++++|.+++..+  +..+++|++++++++.+.+
T Consensus       205 ~~n~i~~~~~~--~-~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~  277 (384)
T d2omza2         205 TNNQISDITPL--G-ILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN  277 (384)
T ss_dssp             CSSCCCCCGGG--G-GCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCC
T ss_pred             cCCccCCCCcc--c-ccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccCCCCc--ccccccCCEeeccCcccCC
Confidence            99988854332  2 23789999999999874 2 467889999999999999876543  7789999999999998875


Q ss_pred             ccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhccc
Q 044176          198 PLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITI  277 (362)
Q Consensus       198 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (362)
                      ..    .+..++.++.+++..|.+.+..   .+..++.++.+++..+......                    ....+++
T Consensus       278 ~~----~~~~~~~l~~l~~~~n~l~~~~---~~~~~~~l~~L~ls~n~l~~l~--------------------~l~~l~~  330 (384)
T d2omza2         278 IS----PLAGLTALTNLELNENQLEDIS---PISNLKNLTYLTLYFNNISDIS--------------------PVSSLTK  330 (384)
T ss_dssp             CG----GGTTCTTCSEEECCSSCCSCCG---GGGGCTTCSEEECCSSCCSCCG--------------------GGGGCTT
T ss_pred             CC----cccccccccccccccccccccc---ccchhcccCeEECCCCCCCCCc--------------------ccccCCC
Confidence            33    2466788999999999887532   2566777888877776432211                    1233789


Q ss_pred             ccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCC
Q 044176          278 FTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSN  334 (362)
Q Consensus       278 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n  334 (362)
                      |++|++++|++++ ++ .++++++|++|++++|++++..|  +.++++|+.|++++|
T Consensus       331 L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         331 LQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            9999999999985 33 58899999999999999996543  899999999999987

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=9.9e-24  Score=181.51  Aligned_cols=267  Identities=18%  Similarity=0.211  Sum_probs=205.4

Q ss_pred             CCcEEEccCCcCCCCCCCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccc
Q 044176           41 NITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNN  120 (362)
Q Consensus        41 ~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~  120 (362)
                      ..+.++-++..++.....-++.+++|++++|.++...+.+|.++++|++|++++|.+....|..+..+ ++|++|++++|
T Consensus        11 ~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l-~~L~~L~l~~n   89 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPL-VKLERLYLSKN   89 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTC-TTCCEEECCSS
T ss_pred             cCCEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCC-CccCEecccCC
Confidence            46778887777776544336789999999999987666789999999999999999983335556665 79999999999


Q ss_pred             cccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCC--CCcchhccCCCCCCeEEccCCcCCCc
Q 044176          121 YLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIG--DTFPSWLGSLPGLKILVLRSNRFYGP  198 (362)
Q Consensus       121 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~n~~~~~  198 (362)
                      +++ .+|..+.   +.+..|...+|.+....+..+.....+..++...+...  ...+..+..+++|+.+++++|.+...
T Consensus        90 ~l~-~l~~~~~---~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l  165 (305)
T d1xkua_          90 QLK-ELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI  165 (305)
T ss_dssp             CCS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred             ccC-cCccchh---hhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcccc
Confidence            987 5665532   57899999999988766677778888899998877542  22345677888999999999887653


Q ss_pred             cccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccc
Q 044176          199 LCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIF  278 (362)
Q Consensus       199 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  278 (362)
                      ..     ..++++++|++++|......+.. +.                                          .++.+
T Consensus       166 ~~-----~~~~~L~~L~l~~n~~~~~~~~~-~~------------------------------------------~~~~l  197 (305)
T d1xkua_         166 PQ-----GLPPSLTELHLDGNKITKVDAAS-LK------------------------------------------GLNNL  197 (305)
T ss_dssp             CS-----SCCTTCSEEECTTSCCCEECTGG-GT------------------------------------------TCTTC
T ss_pred             Cc-----ccCCccCEEECCCCcCCCCChhH-hh------------------------------------------ccccc
Confidence            22     23578999999988877544432 11                                          15678


Q ss_pred             cEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCchhhhh---hHhhhccCC
Q 044176          279 TTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVD---AEICSSFAR  355 (362)
Q Consensus       279 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~---l~~L~~l~~  355 (362)
                      ++|++++|.+++..+..+.++++|++|+|++|+++ .+|.++..+++|++|++++|+++......|..   ...+..+..
T Consensus       198 ~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~  276 (305)
T d1xkua_         198 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSG  276 (305)
T ss_dssp             CEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSE
T ss_pred             cccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCE
Confidence            89999999999888888999999999999999998 56889999999999999999999654444432   223344444


Q ss_pred             CccccC
Q 044176          356 PDLYTN  361 (362)
Q Consensus       356 ~~l~~n  361 (362)
                      .+++||
T Consensus       277 L~L~~N  282 (305)
T d1xkua_         277 VSLFSN  282 (305)
T ss_dssp             EECCSS
T ss_pred             EECCCC
Confidence            477776

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=5.7e-23  Score=174.77  Aligned_cols=250  Identities=18%  Similarity=0.184  Sum_probs=144.4

Q ss_pred             CccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEccc-ccccCcchhhhhcCCCCccEE
Q 044176           62 STRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNN-NYLQGRIPDAFANGSCDLRSL  140 (362)
Q Consensus        62 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L  140 (362)
                      .+++|++++|.++...+.+|.++++|++|+++++.+. .++.........+..+.... +.+....+..+.. +++|++|
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~-~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~-l~~L~~L  110 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG-LGRLHTL  110 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTT-CTTCCEE
T ss_pred             CCCEEECcCCcCCCCCHHHhhcccccccccccccccc-ccccccccccccccccccccccccccccchhhcc-cccCCEE
Confidence            3444445555554444556677777777777777776 33333333224566665543 3444222333433 3677777


Q ss_pred             eccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCc
Q 044176          141 GLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNE  220 (362)
Q Consensus       141 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~  220 (362)
                      ++++|.+....+..+....+|+.+++++|.+++..+.++..+++|+.|++++|.+....+..  +..+++|+.+++++|.
T Consensus       111 ~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~--f~~l~~L~~l~l~~N~  188 (284)
T d1ozna_         111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA--FRGLHSLDRLLLHQNR  188 (284)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTT--TTTCTTCCEEECCSSC
T ss_pred             ecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhh--hccccccchhhhhhcc
Confidence            77777666555556666677777777777776555566666777777777777665533332  3566677777777777


Q ss_pred             ccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCC
Q 044176          221 FTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFK  300 (362)
Q Consensus       221 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~  300 (362)
                      +.+..+.. +..                                          +++++.|++++|.+.+..+..+..++
T Consensus       189 l~~i~~~~-f~~------------------------------------------l~~L~~L~l~~N~i~~~~~~~~~~~~  225 (284)
T d1ozna_         189 VAHVHPHA-FRD------------------------------------------LGRLMTLYLFANNLSALPTEALAPLR  225 (284)
T ss_dssp             CCEECTTT-TTT------------------------------------------CTTCCEEECCSSCCSCCCHHHHTTCT
T ss_pred             ccccChhH-hhh------------------------------------------hhhccccccccccccccccccccccc
Confidence            66443332 111                                          45677777777777766666777777


Q ss_pred             CCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhccCCCcccc
Q 044176          301 SLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSSFARPDLYT  360 (362)
Q Consensus       301 ~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~~~~l~~  360 (362)
                      +|+.|++++|.+...-+ ...-...++++....+++.-..|..+.+. .+..+...+++|
T Consensus       226 ~L~~L~l~~N~l~C~C~-~~~l~~~l~~~~~~~~~~~C~~p~~l~g~-~l~~l~~~~l~g  283 (284)
T d1ozna_         226 ALQYLRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVPCSLPQRLAGR-DLKRLAANDLQG  283 (284)
T ss_dssp             TCCEEECCSSCEECSGG-GHHHHHHHHHCCSEECCCBEEESGGGTTC-BGGGSCGGGSCC
T ss_pred             ccCEEEecCCCCCCCcc-chHHHHHHHhCcCCCCceEeCCchHHcCC-ccccCCHHHCCC
Confidence            77777777776652211 10011123344445555555556666553 455566666655

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=6e-23  Score=174.63  Aligned_cols=213  Identities=20%  Similarity=0.234  Sum_probs=123.6

Q ss_pred             CCcccccCCccccccCCCCcEEEcCCCcccccccC---CcCCCcEEEccCCcCCCCC---CCCCCCccEEEcc-Cccccc
Q 044176            3 NNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQH---PWKNITVLNLQNNTIQGTI---LVPPPSTRAFLFS-NNKLFG   75 (362)
Q Consensus         3 ~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~---~~~~L~~L~l~~n~~~~~~---~~~~~~L~~L~l~-~~~~~~   75 (362)
                      +++++ .+|..++   ++++.|++++|.|+.+++.   .+++|+.|++++|.+....   +...+.++.+... .+.+..
T Consensus        20 ~~~L~-~iP~~ip---~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~   95 (284)
T d1ozna_          20 QQGLQ-AVPVGIP---AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS   95 (284)
T ss_dssp             SSCCS-SCCTTCC---TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCC
T ss_pred             CCCCC-ccCCCCC---CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccccccc
Confidence            34455 5665443   4566777777777666652   4456666777666665322   2335555555543 344444


Q ss_pred             CCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhh
Q 044176           76 QIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYL  155 (362)
Q Consensus        76 ~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  155 (362)
                      ..+..|.++++|++|++++|.+. .++........+|+.+++.+|.++...+..+.. .++|++|++++|.++...+.+|
T Consensus        96 l~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~-~~~L~~L~l~~N~l~~l~~~~f  173 (284)
T d1ozna_          96 VDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRD-LGNLTHLFLHGNRISSVPERAF  173 (284)
T ss_dssp             CCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCCEECTTTT
T ss_pred             ccchhhcccccCCEEecCCcccc-cccccccchhcccchhhhccccccccChhHhcc-ccchhhcccccCcccccchhhh
Confidence            45556666666666666666665 333333333356666666666665322333333 3566666666666665555566


Q ss_pred             hcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccC
Q 044176          156 ADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTG  223 (362)
Q Consensus       156 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~  223 (362)
                      ..+++|+.+++++|.+++..|..+..+++|++|++++|.+.+..+..+  ..+++|+++++++|.+..
T Consensus       174 ~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~--~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         174 RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL--APLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHH--TTCTTCCEEECCSSCEEC
T ss_pred             ccccccchhhhhhccccccChhHhhhhhhccccccccccccccccccc--ccccccCEEEecCCCCCC
Confidence            666666666666666665556666666666666666666655443332  556666666666666553

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.1e-21  Score=163.20  Aligned_cols=197  Identities=24%  Similarity=0.253  Sum_probs=155.2

Q ss_pred             CCCcEEEcCCCcccccccCCcCCCcEEEccCCcCCCC---CCCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccC
Q 044176           19 KSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGT---ILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHN   95 (362)
Q Consensus        19 ~~L~~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~   95 (362)
                      ..+.+++++++.++.+|+.-.++++.|++++|.+++.   .+..+++|++|++++|.++..  +.++.+++|++|++++|
T Consensus        10 ~~~~~v~C~~~~L~~iP~~lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l--~~~~~l~~L~~L~Ls~N   87 (266)
T d1p9ag_          10 ASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHN   87 (266)
T ss_dssp             TTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE--ECCSCCTTCCEEECCSS
T ss_pred             CCCeEEEccCCCCCeeCcCcCcCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc--ccccccccccccccccc
Confidence            5667788888888888765556889999999888753   356688899999999988743  34577899999999999


Q ss_pred             cccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCc
Q 044176           96 NLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTF  175 (362)
Q Consensus        96 ~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  175 (362)
                      +++ ..+..+..+ ++|+.|+++++.+....+..+ ..+.+++++.+++|.++...+..+..++.++.+++++|++++..
T Consensus        88 ~l~-~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~-~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~  164 (266)
T d1p9ag_          88 QLQ-SLPLLGQTL-PALTVLDVSFNRLTSLPLGAL-RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP  164 (266)
T ss_dssp             CCS-SCCCCTTTC-TTCCEEECCSSCCCCCCSSTT-TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC
T ss_pred             ccc-ccccccccc-cccccccccccccceeecccc-ccccccccccccccccceeccccccccccchhcccccccccccC
Confidence            988 666666666 689999999988874334443 44578999999999988666777788899999999999998877


Q ss_pred             chhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccC
Q 044176          176 PSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTG  223 (362)
Q Consensus       176 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~  223 (362)
                      +..+..+++|++|+|++|+++......   ..+++|+.|++++|...-
T Consensus       165 ~~~~~~l~~L~~L~Ls~N~L~~lp~~~---~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         165 AGLLNGLENLDTLLLQENSLYTIPKGF---FGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCCCCTTT---TTTCCCSEEECCSCCBCC
T ss_pred             ccccccccccceeecccCCCcccChhH---CCCCCCCEEEecCCCCCC
Confidence            778888999999999999888533322   457889999999988753

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.9e-20  Score=157.32  Aligned_cols=187  Identities=22%  Similarity=0.250  Sum_probs=157.2

Q ss_pred             CCCcccccCCccccccCCCCcEEEcCCCccccccc---CCcCCCcEEEccCCcCCCCC-CCCCCCccEEEccCcccccCC
Q 044176            2 SNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGTI-LVPPPSTRAFLFSNNKLFGQI   77 (362)
Q Consensus         2 ~~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~---~~~~~L~~L~l~~n~~~~~~-~~~~~~L~~L~l~~~~~~~~~   77 (362)
                      ++++++ ++|..+.   ++++.|++++|.|+.+++   ..+++|++|++++|.++... +..+++|++|++++|.+.. .
T Consensus        18 ~~~~L~-~iP~~lp---~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~Ls~N~l~~-~   92 (266)
T d1p9ag_          18 DKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQS-L   92 (266)
T ss_dssp             TTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSS-C
T ss_pred             cCCCCC-eeCcCcC---cCCCEEECcCCcCCCcCHHHhhccccccccccccccccccccccccccccccccccccccc-c
Confidence            467888 7898765   689999999999999886   46788999999999998643 3458999999999999984 5


Q ss_pred             cccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhc
Q 044176           78 PPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLAD  157 (362)
Q Consensus        78 ~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  157 (362)
                      +..+.++++|++|+++++.+. .++........++++|++++|.+. .++..+...++.++++++++|.+++..+..+..
T Consensus        93 ~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~l~~L~l~~n~l~-~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~  170 (266)
T d1p9ag_          93 PLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNG  170 (266)
T ss_dssp             CCCTTTCTTCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTT
T ss_pred             ccccccccccccccccccccc-eeeccccccccccccccccccccc-eeccccccccccchhcccccccccccCcccccc
Confidence            677889999999999999998 555555444478999999999998 455555555689999999999999777788999


Q ss_pred             CCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCC
Q 044176          158 CTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFY  196 (362)
Q Consensus       158 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  196 (362)
                      +++|+.|++++|+++ .+|..+..+++|+.|+|++|++.
T Consensus       171 l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         171 LENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            999999999999996 67777778999999999999875

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.82  E-value=3.2e-18  Score=149.47  Aligned_cols=288  Identities=20%  Similarity=0.204  Sum_probs=156.4

Q ss_pred             CCCcEEEcCCCcccccccCCcCCCcEEEccCCcCCCCCCCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCccc
Q 044176           19 KSLTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLS   98 (362)
Q Consensus        19 ~~L~~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~   98 (362)
                      .++++|+++++.++.+|. ..++|+.|++++|+++.. +..+.+|+.|++++|.++.. +. +  .+.|++|++++|.+.
T Consensus        38 ~~l~~LdLs~~~L~~lp~-~~~~L~~L~Ls~N~l~~l-p~~~~~L~~L~l~~n~l~~l-~~-l--p~~L~~L~L~~n~l~  111 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPE-LPPHLESLVASCNSLTEL-PELPQSLKSLLVDNNNLKAL-SD-L--PPLLEYLGVSNNQLE  111 (353)
T ss_dssp             HTCSEEECTTSCCSCCCS-CCTTCSEEECCSSCCSSC-CCCCTTCCEEECCSSCCSCC-CS-C--CTTCCEEECCSSCCS
T ss_pred             cCCCEEEeCCCCCCCCCC-CCCCCCEEECCCCCCccc-ccchhhhhhhhhhhcccchh-hh-h--ccccccccccccccc
Confidence            357777777777777664 456777777777777633 44466777777777776632 22 1  235777777777776


Q ss_pred             ccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCc---
Q 044176           99 GTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTF---  175 (362)
Q Consensus        99 ~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~---  175 (362)
                       .+|. .+.+ ++|++|+++++.+. ..+..    ...+..+.+..+...  ....+..++.++.+++.++......   
T Consensus       112 -~lp~-~~~l-~~L~~L~l~~~~~~-~~~~~----~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~~~~~~~  181 (353)
T d1jl5a_         112 -KLPE-LQNS-SFLKIIDVDNNSLK-KLPDL----PPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLKKLPDLP  181 (353)
T ss_dssp             -SCCC-CTTC-TTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCSSCCCCC
T ss_pred             -cccc-hhhh-ccceeecccccccc-ccccc----cccccchhhcccccc--ccccccccccceeccccccccccccccc
Confidence             5654 3444 57777777777665 22221    134555555554432  1233445555666666555442211   


Q ss_pred             ---------------chhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhcc
Q 044176          176 ---------------PSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVD  240 (362)
Q Consensus       176 ---------------~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~  240 (362)
                                     ...+..++.++.+++++|......      ....++..+.+.++.+......     ...+...+
T Consensus       182 ~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~------~~~~~l~~~~~~~~~~~~~~~~-----~~~l~~~~  250 (353)
T d1jl5a_         182 LSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLP------DLPPSLEALNVRDNYLTDLPEL-----PQSLTFLD  250 (353)
T ss_dssp             TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCC------SCCTTCCEEECCSSCCSCCCCC-----CTTCCEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccc------cccccccccccccccccccccc-----cccccccc
Confidence                           011334555666666655443211      1123445555555544321110     11111111


Q ss_pred             ccCCCcccccCCccccccceeeee-cCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhh
Q 044176          241 EKGSDGLYMQGEEDYYQDSVTVTV-KGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVS  319 (362)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~  319 (362)
                      .............   ........ ..........+++|+.|++++|+++ .+|.   .+++|+.|++++|+|+ .+|+ 
T Consensus       251 ~~~~~~~~l~~l~---~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~---~~~~L~~L~L~~N~L~-~l~~-  321 (353)
T d1jl5a_         251 VSENIFSGLSELP---PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPA---LPPRLERLIASFNHLA-EVPE-  321 (353)
T ss_dssp             CCSSCCSEESCCC---TTCCEEECCSSCCSEECCCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-CCCC-
T ss_pred             ccccccccccccc---chhcccccccCccccccccCCCCCEEECCCCccC-cccc---ccCCCCEEECCCCcCC-cccc-
Confidence            1111111111000   00000000 0011112233678999999999998 4553   3688999999999998 4554 


Q ss_pred             hhcCCCcCEEEccCCcccccCchhhh
Q 044176          320 FANMIVLESLDLSSNKLHGRIPEQFV  345 (362)
Q Consensus       320 ~~~~~~L~~L~l~~n~~~~~~~~~~~  345 (362)
                        .+++|++|++++|+++ .+|+...
T Consensus       322 --~~~~L~~L~L~~N~L~-~lp~~~~  344 (353)
T d1jl5a_         322 --LPQNLKQLHVEYNPLR-EFPDIPE  344 (353)
T ss_dssp             --CCTTCCEEECCSSCCS-SCCCCCT
T ss_pred             --ccCCCCEEECcCCcCC-CCCcccc
Confidence              3568999999999998 5676433

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=1.2e-17  Score=136.56  Aligned_cols=184  Identities=23%  Similarity=0.287  Sum_probs=113.7

Q ss_pred             CCCCcEEEcCCCccccccc-CCcCCCcEEEccCCcCCCCC-CCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccC
Q 044176           18 WKSLTYLDISNNFLTQIEQ-HPWKNITVLNLQNNTIQGTI-LVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHN   95 (362)
Q Consensus        18 ~~~L~~L~ls~~~i~~~~~-~~~~~L~~L~l~~n~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~   95 (362)
                      +.+|+.|+++++.|+++.+ ..+++|+.|++++|.+.+.. +..+++++.+++++|.++..  +.++++++|++++++++
T Consensus        40 l~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~i--~~l~~l~~L~~l~l~~~  117 (227)
T d1h6ua2          40 LDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTST  117 (227)
T ss_dssp             HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTS
T ss_pred             cCCcCEEECCCCCCCcchhHhcCCCCcEeecCCceeecccccccccccccccccccccccc--ccccccccccccccccc
Confidence            4677777777777777654 46777777777777776543 45577777777777766532  34666777777777777


Q ss_pred             cccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCc
Q 044176           96 NLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTF  175 (362)
Q Consensus        96 ~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  175 (362)
                      ... .++ .+... +.++.+.++++.+...  ..+... ++|++|.+++|.+.+.  ..+..+++|+.|++++|++++. 
T Consensus       118 ~~~-~~~-~~~~~-~~~~~l~~~~~~~~~~--~~~~~~-~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~l-  188 (227)
T d1h6ua2         118 QIT-DVT-PLAGL-SNLQVLYLDLNQITNI--SPLAGL-TNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISDI-  188 (227)
T ss_dssp             CCC-CCG-GGTTC-TTCCEEECCSSCCCCC--GGGGGC-TTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-
T ss_pred             ccc-ccc-hhccc-cchhhhhchhhhhchh--hhhccc-cccccccccccccccc--hhhcccccceecccCCCccCCC-
Confidence            665 222 22222 4666777766665422  223332 5677777777766532  2366677777777777766543 


Q ss_pred             chhccCCCCCCeEEccCCcCCCccccccccccCCcccEEecc
Q 044176          176 PSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLS  217 (362)
Q Consensus       176 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~  217 (362)
                       ..+..+++|++|++++|++++..+    +..+++|+.|+++
T Consensus       189 -~~l~~l~~L~~L~Ls~N~lt~i~~----l~~l~~L~~L~ls  225 (227)
T d1h6ua2         189 -SPLASLPNLIEVHLKNNQISDVSP----LANTSNLFIVTLT  225 (227)
T ss_dssp             -GGGGGCTTCCEEECTTSCCCBCGG----GTTCTTCCEEEEE
T ss_pred             -hhhcCCCCCCEEECcCCcCCCCcc----cccCCCCCEEEee
Confidence             225666777777777776654322    3556677777664

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=1.8e-17  Score=135.52  Aligned_cols=126  Identities=19%  Similarity=0.293  Sum_probs=56.3

Q ss_pred             cCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCC
Q 044176           82 YSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGL  161 (362)
Q Consensus        82 ~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L  161 (362)
                      ..+.+|++|++.+|.++ .++ .+..+ ++|++|++++|.+.+..|  +.. +++++++.+++|.++. + ..+..++.|
T Consensus        38 ~~l~~L~~L~l~~~~i~-~l~-~l~~l-~~L~~L~ls~n~i~~~~~--l~~-l~~l~~l~~~~n~~~~-i-~~l~~l~~L  109 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVT-TIE-GVQYL-NNLIGLELKDNQITDLAP--LKN-LTKITELELSGNPLKN-V-SAIAGLQSI  109 (227)
T ss_dssp             HHHHTCCEEECTTSCCC-CCT-TGGGC-TTCCEEECCSSCCCCCGG--GTT-CCSCCEEECCSCCCSC-C-GGGTTCTTC
T ss_pred             HHcCCcCEEECCCCCCC-cch-hHhcC-CCCcEeecCCceeecccc--ccc-cccccccccccccccc-c-ccccccccc
Confidence            34455555555555554 332 34443 455555555555442211  222 2455555555555442 1 234445555


Q ss_pred             cEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcc
Q 044176          162 EVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEF  221 (362)
Q Consensus       162 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~  221 (362)
                      +.++++++...+.  ..+...+.++.+.++.+.+....    .+..+++|+++++++|.+
T Consensus       110 ~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~L~~L~l~~n~~  163 (227)
T d1h6ua2         110 KTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNIS----PLAGLTNLQYLSIGNAQV  163 (227)
T ss_dssp             CEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCG----GGGGCTTCCEEECCSSCC
T ss_pred             ccccccccccccc--chhccccchhhhhchhhhhchhh----hhcccccccccccccccc
Confidence            5555555544322  12334445555555444433211    123344455555544444

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.75  E-value=1.4e-16  Score=138.84  Aligned_cols=281  Identities=23%  Similarity=0.250  Sum_probs=172.3

Q ss_pred             CCCcEEEccCCcCCCCCCCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEccc
Q 044176           40 KNITVLNLQNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNN  119 (362)
Q Consensus        40 ~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~  119 (362)
                      .++++|+++++.++. .+..+++|++|++++|.++ .+|..   +.+|++|++++|+++ .++.    +.+.|++|++++
T Consensus        38 ~~l~~LdLs~~~L~~-lp~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~----lp~~L~~L~L~~  107 (353)
T d1jl5a_          38 RQAHELELNNLGLSS-LPELPPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSD----LPPLLEYLGVSN  107 (353)
T ss_dssp             HTCSEEECTTSCCSC-CCSCCTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCS----CCTTCCEEECCS
T ss_pred             cCCCEEEeCCCCCCC-CCCCCCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhh----hccccccccccc
Confidence            468999999999875 4556889999999999998 55654   468999999999998 6653    335799999999


Q ss_pred             ccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCcc
Q 044176          120 NYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPL  199 (362)
Q Consensus       120 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  199 (362)
                      |.+. .+|. +.. +++|++++++++.+... +.   ....+..+.+..+....  ...+..++.++.+.+..+......
T Consensus       108 n~l~-~lp~-~~~-l~~L~~L~l~~~~~~~~-~~---~~~~l~~l~~~~~~~~~--~~~l~~l~~l~~L~l~~n~~~~~~  178 (353)
T d1jl5a_         108 NQLE-KLPE-LQN-SSFLKIIDVDNNSLKKL-PD---LPPSLEFIAAGNNQLEE--LPELQNLPFLTAIYADNNSLKKLP  178 (353)
T ss_dssp             SCCS-SCCC-CTT-CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSS--CCCCTTCTTCCEEECCSSCCSSCC
T ss_pred             cccc-cccc-hhh-hccceeecccccccccc-cc---ccccccchhhccccccc--cccccccccceecccccccccccc
Confidence            9997 5664 333 48999999999987733 22   34667788877766533  244667888889998887665321


Q ss_pred             cc----------------ccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeee
Q 044176          200 CE----------------VNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVT  263 (362)
Q Consensus       200 ~~----------------~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~  263 (362)
                      ..                ......++.++.+++++|.... .+..    ..++.......+.........   .......
T Consensus       179 ~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~-~~~~----~~~l~~~~~~~~~~~~~~~~~---~~l~~~~  250 (353)
T d1jl5a_         179 DLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKT-LPDL----PPSLEALNVRDNYLTDLPELP---QSLTFLD  250 (353)
T ss_dssp             CCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS-CCSC----CTTCCEEECCSSCCSCCCCCC---TTCCEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccc-cccc----ccccccccccccccccccccc---ccccccc
Confidence            11                1112345566666666655442 1111    122222222222211111100   0000000


Q ss_pred             ecC-cchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCch
Q 044176          264 VKG-RDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPE  342 (362)
Q Consensus       264 ~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~  342 (362)
                      ... ....+..........++..+.+.    .....+++|++|++++|+++ .+|.   .+++|+.|++++|+++ .+|+
T Consensus       251 ~~~~~~~~l~~l~~~~~~~~~~~~~~~----~~~~~~~~L~~L~Ls~N~l~-~lp~---~~~~L~~L~L~~N~L~-~l~~  321 (353)
T d1jl5a_         251 VSENIFSGLSELPPNLYYLNASSNEIR----SLCDLPPSLEELNVSNNKLI-ELPA---LPPRLERLIASFNHLA-EVPE  321 (353)
T ss_dssp             CCSSCCSEESCCCTTCCEEECCSSCCS----EECCCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-CCCC
T ss_pred             cccccccccccccchhcccccccCccc----cccccCCCCCEEECCCCccC-cccc---ccCCCCEEECCCCcCC-cccc
Confidence            000 00000011223344445444443    22345689999999999998 4554   3679999999999999 5675


Q ss_pred             hhhhhHhhhccCCCccccCC
Q 044176          343 QFVDAEICSSFARPDLYTNA  362 (362)
Q Consensus       343 ~~~~l~~L~~l~~~~l~~n~  362 (362)
                      ..   ++|++|   ++++|+
T Consensus       322 ~~---~~L~~L---~L~~N~  335 (353)
T d1jl5a_         322 LP---QNLKQL---HVEYNP  335 (353)
T ss_dssp             CC---TTCCEE---ECCSSC
T ss_pred             cc---CCCCEE---ECcCCc
Confidence            43   355665   666664

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.4e-19  Score=163.80  Aligned_cols=330  Identities=19%  Similarity=0.177  Sum_probs=185.0

Q ss_pred             CCCCcccccCCccccccCCCCcEEEcCCCccccccc-------CCcCCCcEEEccCCcCCCC-------CC-CCCCCccE
Q 044176            1 LSNNRIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ-------HPWKNITVLNLQNNTIQGT-------IL-VPPPSTRA   65 (362)
Q Consensus         1 L~~n~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~-------~~~~~L~~L~l~~n~~~~~-------~~-~~~~~L~~   65 (362)
                      +++|++++.-...++..+++++.|++++|+|++...       ..+++|++|++++|.+++.       .+ ...++|++
T Consensus         9 ~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~   88 (460)
T d1z7xw1           9 IQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQK   88 (460)
T ss_dssp             EESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCE
T ss_pred             eeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCE
Confidence            467788765445556667999999999998875432       3568899999999988631       11 22467999


Q ss_pred             EEccCcccccC----CcccccCCCCCCEEEcccCcccccC----CCCcccc----------------------------c
Q 044176           66 FLFSNNKLFGQ----IPPSIYSLSSLEYISLSHNNLSGTI----PPCLGNF----------------------------S  109 (362)
Q Consensus        66 L~l~~~~~~~~----~~~~~~~l~~L~~L~L~~~~~~~~~----~~~l~~~----------------------------~  109 (362)
                      |++++|.+++.    ++..+..+++|++|++++|.+++..    ...+...                            .
T Consensus        89 L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  168 (460)
T d1z7xw1          89 LSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAK  168 (460)
T ss_dssp             EECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHC
T ss_pred             EECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccccccccc
Confidence            99999988653    3455677899999999998875210    0000000                            0


Q ss_pred             ccccEEEcccccccCc----chhhhhcCCCCccEEeccCCcccCCC----chhhhcCCCCcEEEccCCCCCCC-----cc
Q 044176          110 TQLTILHLNNNYLQGR----IPDAFANGSCDLRSLGLNSNKLRGSF----PRYLADCTGLEVVNVGNNMIGDT-----FP  176 (362)
Q Consensus       110 ~~L~~L~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~-----~~  176 (362)
                      ..++.++++++.....    ....+.........+.+..+.+....    ...+...+.++.+++.++.+...     ..
T Consensus       169 ~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~  248 (460)
T d1z7xw1         169 PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCP  248 (460)
T ss_dssp             TTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccccchhhc
Confidence            2344445444433211    11111111123455555555443221    12234556777777777665322     12


Q ss_pred             hhccCCCCCCeEEccCCcCCCcccc--ccccccCCcccEEeccCCcccCCCchhHHh----hhhhhhhccccCCCccccc
Q 044176          177 SWLGSLPGLKILVLRSNRFYGPLCE--VNIMLPFEALRIIDLSHNEFTGFLPRWIFV----SLETMKNVDEKGSDGLYMQ  250 (362)
Q Consensus       177 ~~~~~~~~L~~L~l~~n~~~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~----~~~~l~~l~~~~~~~~~~~  250 (362)
                      ........++.+++++|.+......  ...+...+.++.+++++|.+.......+..    ....++.+++..+......
T Consensus       249 ~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~  328 (460)
T d1z7xw1         249 GLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAAC  328 (460)
T ss_dssp             HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhh
Confidence            2233456777777777766532211  112344566777777777765322221111    1123333333333210000


Q ss_pred             CCccccccceeeeecCcchHhhhhcccccEEeccCcccCCCc----chhhc-CCCCCcEEEccCCcCccC----chhhhh
Q 044176          251 GEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEI----PQVLG-DFKSLIVLNLSHNGLTGS----IPVSFA  321 (362)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~----~~~~~-~~~~L~~L~l~~n~i~~~----~~~~~~  321 (362)
                                    ...........++|+.|++++|+++++.    +..+. ..+.|++|+|++|.+++.    +++.+.
T Consensus       329 --------------~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~  394 (460)
T d1z7xw1         329 --------------CSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLL  394 (460)
T ss_dssp             --------------HHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH
T ss_pred             --------------hhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHh
Confidence                          0000112233567899999998886543    22332 356789999999988743    344567


Q ss_pred             cCCCcCEEEccCCcccccCchhh
Q 044176          322 NMIVLESLDLSSNKLHGRIPEQF  344 (362)
Q Consensus       322 ~~~~L~~L~l~~n~~~~~~~~~~  344 (362)
                      .+++|++|++++|++++.....+
T Consensus       395 ~~~~L~~L~Ls~N~i~~~g~~~l  417 (460)
T d1z7xw1         395 ANHSLRELDLSNNCLGDAGILQL  417 (460)
T ss_dssp             HCCCCCEEECCSSSCCHHHHHHH
T ss_pred             cCCCCCEEECCCCcCCHHHHHHH
Confidence            77889999999998886544443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=4.7e-17  Score=131.16  Aligned_cols=178  Identities=21%  Similarity=0.302  Sum_probs=116.8

Q ss_pred             EEcCCCccccccc-CCcCCCcEEEccCCcCCCCC-CCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccccC
Q 044176           24 LDISNNFLTQIEQ-HPWKNITVLNLQNNTIQGTI-LVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTI  101 (362)
Q Consensus        24 L~ls~~~i~~~~~-~~~~~L~~L~l~~n~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~  101 (362)
                      ..+..+.+++... ..+.+|+.|++++|.+.+.. +..+++|++|++++|.+++. + .++.+++|++|++++|+++ .+
T Consensus        29 ~~l~~~~~~~~~~~~~L~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~-~l  105 (210)
T d1h6ta2          29 DNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVK-DL  105 (210)
T ss_dssp             HHTTCSCTTSEECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC-CG
T ss_pred             HHhCcCccCCccCHHHhcCccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCc-c-ccccCcccccccccccccc-cc
Confidence            3444555554433 34566777777777665433 23467777777777777643 2 3567788888888888777 45


Q ss_pred             CCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhccC
Q 044176          102 PPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGS  181 (362)
Q Consensus       102 ~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  181 (362)
                      + .+..+ ++|+.|++++|.+. .++ .+.. ++.++.+++++|.+++  +..+..+++|+.+++++|.+.+..  .+..
T Consensus       106 ~-~l~~l-~~L~~L~l~~~~~~-~~~-~l~~-l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i~--~l~~  176 (210)
T d1h6ta2         106 S-SLKDL-KKLKSLSLEHNGIS-DIN-GLVH-LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIV--PLAG  176 (210)
T ss_dssp             G-GGTTC-TTCCEEECTTSCCC-CCG-GGGG-CTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCG--GGTT
T ss_pred             c-ccccc-cccccccccccccc-ccc-cccc-cccccccccccccccc--cccccccccccccccccccccccc--cccC
Confidence            4 35455 67888888887765 232 3443 3678888888887763  345667788888888888876532  3677


Q ss_pred             CCCCCeEEccCCcCCCccccccccccCCcccEEecc
Q 044176          182 LPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLS  217 (362)
Q Consensus       182 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~  217 (362)
                      +++|++|++++|.+++. +   .+..+++|++|+++
T Consensus       177 l~~L~~L~Ls~N~i~~l-~---~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         177 LTKLQNLYLSKNHISDL-R---ALAGLKNLDVLELF  208 (210)
T ss_dssp             CTTCCEEECCSSCCCBC-G---GGTTCTTCSEEEEE
T ss_pred             CCCCCEEECCCCCCCCC-h---hhcCCCCCCEEEcc
Confidence            88888888888877642 1   24667888888775

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.3e-17  Score=137.83  Aligned_cols=220  Identities=15%  Similarity=0.090  Sum_probs=125.4

Q ss_pred             CEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCC-chhhhcCCCCcEEEc
Q 044176           88 EYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSF-PRYLADCTGLEVVNV  166 (362)
Q Consensus        88 ~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l  166 (362)
                      +.++.++..++ .+|..+.   +++++|++++|.++ .+|...+..+++|++|++++|.+...+ +.+|..++.++.+.+
T Consensus        11 ~~i~c~~~~l~-~iP~~l~---~~l~~L~Ls~n~i~-~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~   85 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   85 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC---SCCSEEEEESCCCC-EECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEE
T ss_pred             CEEEEeCCCCC-CcCCCCC---CCCCEEECcCCcCC-ccChhHhhccchhhhhhhccccccceeeccccccccccccccc
Confidence            45566666666 5665443   35666777766665 344432223366777777776665332 345666677777766


Q ss_pred             cC-CCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCC
Q 044176          167 GN-NMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSD  245 (362)
Q Consensus       167 ~~-~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~  245 (362)
                      .. +.+....+..+..+++|+++++.++.+..... ...+..+..+..+....+.+....+.. +..             
T Consensus        86 ~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~-~~~~~~l~~l~~~~~~n~~l~~i~~~~-~~~-------------  150 (242)
T d1xwdc1          86 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD-VHKIHSLQKVLLDIQDNINIHTIERNS-FVG-------------  150 (242)
T ss_dssp             ECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCC-CTTTCBSSCEEEEEESCTTCCEECTTS-STT-------------
T ss_pred             cccccccccccccccccccccccccchhhhccccc-ccccccccccccccccccccccccccc-ccc-------------
Confidence            43 44545555566777777777777776654222 112233444444444444443211111 100             


Q ss_pred             cccccCCccccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchhhcCCCCCcEE-EccCCcCccCchhhhhcCC
Q 044176          246 GLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQVLGDFKSLIVL-NLSHNGLTGSIPVSFANMI  324 (362)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L-~l~~n~i~~~~~~~~~~~~  324 (362)
                                                  ....++.+++++|+++...+..+. ..+++++ ++.+|+++...+..|.+++
T Consensus       151 ----------------------------~~~~l~~L~l~~n~l~~i~~~~~~-~~~l~~~~~l~~n~l~~l~~~~f~~l~  201 (242)
T d1xwdc1         151 ----------------------------LSFESVILWLNKNGIQEIHNCAFN-GTQLDELNLSDNNNLEELPNDVFHGAS  201 (242)
T ss_dssp             ----------------------------SBSSCEEEECCSSCCCEECTTTTT-TCCEEEEECTTCTTCCCCCTTTTTTSC
T ss_pred             ----------------------------ccccceeeeccccccccccccccc-chhhhccccccccccccccHHHhcCCC
Confidence                                        023567778888877744444333 3444444 4566777755455678888


Q ss_pred             CcCEEEccCCcccccCchhhhhhHhhhccCCC
Q 044176          325 VLESLDLSSNKLHGRIPEQFVDAEICSSFARP  356 (362)
Q Consensus       325 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~~~  356 (362)
                      +|++|++++|+++...+..|.+++.|++++..
T Consensus       202 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         202 GPVILDISRTRIHSLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             CCSEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred             CCCEEECCCCcCCccCHHHHcCCcccccCcCC
Confidence            88888888888885445567777777666543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=1.5e-16  Score=126.98  Aligned_cols=175  Identities=25%  Similarity=0.282  Sum_probs=112.6

Q ss_pred             EEcCCCccccccc-CCcCCCcEEEccCCcCCCCC-CCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccccC
Q 044176           24 LDISNNFLTQIEQ-HPWKNITVLNLQNNTIQGTI-LVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTI  101 (362)
Q Consensus        24 L~ls~~~i~~~~~-~~~~~L~~L~l~~n~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~  101 (362)
                      ..++.+.+++... ..+++++.|+++++.+.+.. +..+++|++|++++|.+++..  .++++++|++|++++|.+. .+
T Consensus        23 ~~l~~~~~~~~~~~~~l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~-~~   99 (199)
T d2omxa2          23 TVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIA-DI   99 (199)
T ss_dssp             HHTTCSSTTSEECHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-CC
T ss_pred             HHhCCCCCCCccCHHHhcCCCEEECCCCCCCCccccccCCCcCcCccccccccCcc--cccCCcccccccccccccc-cc
Confidence            3445555555433 34566666666666665422 333667777777777766432  3777888888888888776 44


Q ss_pred             CCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhccC
Q 044176          102 PPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGS  181 (362)
Q Consensus       102 ~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  181 (362)
                      + .+..+ +.|+.|+++++.... . ..+.. +++|+++++++|.+.. . ..+..+++++.|++.+|++++..  .++.
T Consensus       100 ~-~l~~l-~~L~~L~l~~~~~~~-~-~~~~~-l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l~--~l~~  170 (199)
T d2omxa2         100 T-PLANL-TNLTGLTLFNNQITD-I-DPLKN-LTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDLK--PLAN  170 (199)
T ss_dssp             G-GGTTC-TTCSEEECCSSCCCC-C-GGGTT-CTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCCG--GGTT
T ss_pred             c-ccccc-ccccccccccccccc-c-cccch-hhhhHHhhhhhhhhcc-c-ccccccccccccccccccccCCc--cccC
Confidence            4 34444 678888887777652 2 22333 4778888888887763 2 35777888888888888876542  3777


Q ss_pred             CCCCCeEEccCCcCCCccccccccccCCcccEE
Q 044176          182 LPGLKILVLRSNRFYGPLCEVNIMLPFEALRII  214 (362)
Q Consensus       182 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L  214 (362)
                      +++|++|++++|++++..    .+..+++|++|
T Consensus       171 l~~L~~L~ls~N~i~~i~----~l~~L~~L~~L  199 (199)
T d2omxa2         171 LTTLERLDISSNKVSDIS----VLAKLTNLESL  199 (199)
T ss_dssp             CTTCCEEECCSSCCCCCG----GGGGCTTCSEE
T ss_pred             CCCCCEEECCCCCCCCCc----cccCCCCCCcC
Confidence            888888888888776522    23566677654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.8e-17  Score=140.06  Aligned_cols=110  Identities=18%  Similarity=0.165  Sum_probs=60.0

Q ss_pred             ccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCC-CCCCCcch-hccCCCCCCe
Q 044176          110 TQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNN-MIGDTFPS-WLGSLPGLKI  187 (362)
Q Consensus       110 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~-~~~~~~~L~~  187 (362)
                      .+|++|+++++.+.......+...+++|++|.+.+|.+++..+..++.+++|+.|++++| .+++.... ....+++|++
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            367777777766653333344444467777777777666555566666777777777765 34322211 2345677777


Q ss_pred             EEccCCc-CCCccccccccccCCcccEEeccCC
Q 044176          188 LVLRSNR-FYGPLCEVNIMLPFEALRIIDLSHN  219 (362)
Q Consensus       188 L~l~~n~-~~~~~~~~~~~~~~~~L~~L~l~~n  219 (362)
                      |++++|. +++..........++.|+.|+++++
T Consensus       126 L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~  158 (284)
T d2astb2         126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY  158 (284)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred             cccccccccccccchhhhcccccccchhhhccc
Confidence            7776653 2221111111122456777776653

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=8e-17  Score=133.01  Aligned_cols=90  Identities=14%  Similarity=0.291  Sum_probs=42.2

Q ss_pred             cccccCCccccccCCCCcEEEcCCCccccccc---CCcCCCcEEEccCCcCCCC----CCCCCCCccEEEccC-cccccC
Q 044176            5 RIRGRISKSDSQRWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLQNNTIQGT----ILVPPPSTRAFLFSN-NKLFGQ   76 (362)
Q Consensus         5 ~~~~~~~~~~~~~~~~L~~L~ls~~~i~~~~~---~~~~~L~~L~l~~n~~~~~----~~~~~~~L~~L~l~~-~~~~~~   76 (362)
                      +++ .+|..++   ++++.|++++|.|+.++.   ..+++|++|++++|.+...    .+..++.++++.+.. +.+...
T Consensus        19 ~l~-~iP~~l~---~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~   94 (242)
T d1xwdc1          19 KVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI   94 (242)
T ss_dssp             SCS-SCCSCSC---SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEE
T ss_pred             CCC-CcCCCCC---CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccc
Confidence            344 4554433   345555555555555544   2344555555555544321    122344555554432 334434


Q ss_pred             CcccccCCCCCCEEEcccCccc
Q 044176           77 IPPSIYSLSSLEYISLSHNNLS   98 (362)
Q Consensus        77 ~~~~~~~l~~L~~L~L~~~~~~   98 (362)
                      .+..|.++++|++++++++.+.
T Consensus        95 ~~~~~~~l~~L~~l~l~~~~l~  116 (242)
T d1xwdc1          95 NPEAFQNLPNLQYLLISNTGIK  116 (242)
T ss_dssp             CTTSEECCTTCCEEEEESCCCC
T ss_pred             ccccccccccccccccchhhhc
Confidence            4444555555555555555554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=5e-16  Score=125.04  Aligned_cols=162  Identities=26%  Similarity=0.308  Sum_probs=104.8

Q ss_pred             CCCCcEEEcCCCccccccc-CCcCCCcEEEccCCcCCCCC-CCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccC
Q 044176           18 WKSLTYLDISNNFLTQIEQ-HPWKNITVLNLQNNTIQGTI-LVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHN   95 (362)
Q Consensus        18 ~~~L~~L~ls~~~i~~~~~-~~~~~L~~L~l~~n~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~   95 (362)
                      +.+|+.|+++++.++++.+ ..+++|++|++++|.+++.. ...+++|++|++++|.++. ++ .+..+++|+.|++++|
T Consensus        45 L~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~~  122 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHN  122 (210)
T ss_dssp             HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTS
T ss_pred             hcCccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCccccccCccccccccccccccc-cc-cccccccccccccccc
Confidence            3667777777777777665 56777777777777776543 3346777777777777764 22 4667777777777777


Q ss_pred             cccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCc
Q 044176           96 NLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTF  175 (362)
Q Consensus        96 ~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  175 (362)
                      .+. .++ .+..+ +.++.+++++|.+.+  +..+.. +++|+++++++|.+++. + .+.++++|+.|++++|.+++. 
T Consensus       123 ~~~-~~~-~l~~l-~~l~~l~~~~n~l~~--~~~~~~-l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~~l-  193 (210)
T d1h6ta2         123 GIS-DIN-GLVHL-PQLESLYLGNNKITD--ITVLSR-LTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHISDL-  193 (210)
T ss_dssp             CCC-CCG-GGGGC-TTCCEEECCSSCCCC--CGGGGG-CTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCBC-
T ss_pred             ccc-ccc-ccccc-ccccccccccccccc--cccccc-ccccccccccccccccc-c-cccCCCCCCEEECCCCCCCCC-
Confidence            765 333 34444 567777777777652  222232 36777777777777632 2 366777777777777777543 


Q ss_pred             chhccCCCCCCeEEcc
Q 044176          176 PSWLGSLPGLKILVLR  191 (362)
Q Consensus       176 ~~~~~~~~~L~~L~l~  191 (362)
                      + .+..+++|++|+++
T Consensus       194 ~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         194 R-ALAGLKNLDVLELF  208 (210)
T ss_dssp             G-GGTTCTTCSEEEEE
T ss_pred             h-hhcCCCCCCEEEcc
Confidence            2 46677777777765

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=6.4e-16  Score=123.33  Aligned_cols=159  Identities=26%  Similarity=0.324  Sum_probs=103.0

Q ss_pred             CCccEEeccCCcccCCCchhhhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEE
Q 044176          135 CDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRII  214 (362)
Q Consensus       135 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L  214 (362)
                      +++++|+++++.+++.  ..+..+++|+.|++++|.+++..+  ++.+++|++|++++|.+....    .+..++.|+.+
T Consensus        40 ~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~~----~l~~l~~L~~L  111 (199)
T d2omxa2          40 DQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT----PLANLTNLTGL  111 (199)
T ss_dssp             TTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG----GGTTCTTCSEE
T ss_pred             cCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCccc--ccCCccccccccccccccccc----ccccccccccc
Confidence            4666677766666532  245666777777777777655432  667777777777777655422    23566777777


Q ss_pred             eccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCcccCCCcch
Q 044176          215 DLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQ  294 (362)
Q Consensus       215 ~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~  294 (362)
                      +++++......+   +.                                          .+++|+.|++++|.+.. + +
T Consensus       112 ~l~~~~~~~~~~---~~------------------------------------------~l~~L~~L~l~~n~l~~-~-~  144 (199)
T d2omxa2         112 TLFNNQITDIDP---LK------------------------------------------NLTNLNRLELSSNTISD-I-S  144 (199)
T ss_dssp             ECCSSCCCCCGG---GT------------------------------------------TCTTCSEEECCSSCCCC-C-G
T ss_pred             cccccccccccc---cc------------------------------------------hhhhhHHhhhhhhhhcc-c-c
Confidence            777666553211   00                                          15667788888887763 2 3


Q ss_pred             hhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCchhhhhhHhhhc
Q 044176          295 VLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPEQFVDAEICSS  352 (362)
Q Consensus       295 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  352 (362)
                      .+..+++|++|++.+|++++.  ..+.++++|++|++++|++++ ++ .+..+++|++
T Consensus       145 ~l~~~~~L~~L~l~~n~l~~l--~~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~  198 (199)
T d2omxa2         145 ALSGLTSLQQLNFSSNQVTDL--KPLANLTTLERLDISSNKVSD-IS-VLAKLTNLES  198 (199)
T ss_dssp             GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSE
T ss_pred             cccccccccccccccccccCC--ccccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCc
Confidence            467778888888888888743  347788888888888888875 33 4666666554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.4e-18  Score=157.18  Aligned_cols=327  Identities=18%  Similarity=0.145  Sum_probs=183.7

Q ss_pred             CCCcEEEcCCCccccccc----CCcCCCcEEEccCCcCCCCC-------CCCCCCccEEEccCcccccCCc----cccc-
Q 044176           19 KSLTYLDISNNFLTQIEQ----HPWKNITVLNLQNNTIQGTI-------LVPPPSTRAFLFSNNKLFGQIP----PSIY-   82 (362)
Q Consensus        19 ~~L~~L~ls~~~i~~~~~----~~~~~L~~L~l~~n~~~~~~-------~~~~~~L~~L~l~~~~~~~~~~----~~~~-   82 (362)
                      ++|+.||++++++++...    ..+++++.|++++|.+++..       +...++|++|++++|.++....    ..+. 
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            468999999999988653    46789999999999987422       3458899999999998864222    2222 


Q ss_pred             CCCCCCEEEcccCccccc----CCCCcccccccccEEEcccccccCcchhhhhc----CC--------------------
Q 044176           83 SLSSLEYISLSHNNLSGT----IPPCLGNFSTQLTILHLNNNYLQGRIPDAFAN----GS--------------------  134 (362)
Q Consensus        83 ~l~~L~~L~L~~~~~~~~----~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~----~~--------------------  134 (362)
                      ...+|++|++++|++++.    ++..+... ++|++|++++|.+.......+..    ..                    
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~-~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  160 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTL-PTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP  160 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSC-TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhcc-ccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcc
Confidence            235799999999998743    22333344 68999999998875322211111    11                    


Q ss_pred             --------CCccEEeccCCcccCCCc----hhh-hcCCCCcEEEccCCCCCCCc----chhccCCCCCCeEEccCCcCCC
Q 044176          135 --------CDLRSLGLNSNKLRGSFP----RYL-ADCTGLEVVNVGNNMIGDTF----PSWLGSLPGLKILVLRSNRFYG  197 (362)
Q Consensus       135 --------~~L~~L~l~~~~~~~~~~----~~~-~~l~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~n~~~~  197 (362)
                              +.++.+.++++.......    ..+ ........+++.++......    ...+...+.++.+++..+....
T Consensus       161 ~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~  240 (460)
T d1z7xw1         161 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD  240 (460)
T ss_dssp             HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccc
Confidence                    123333333332221000    001 11223444555544432211    1123345566677776665432


Q ss_pred             cccc---ccccccCCcccEEeccCCcccCCCchhHH---hhhhhhhhccccCCCcccccCCccccccceeeeecCcchHh
Q 044176          198 PLCE---VNIMLPFEALRIIDLSHNEFTGFLPRWIF---VSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVL  271 (362)
Q Consensus       198 ~~~~---~~~~~~~~~L~~L~l~~n~~~~~~~~~~~---~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (362)
                      ....   .........++.+++++|.+.........   ...+.+..+++..+.... .+            ........
T Consensus       241 ~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~-~~------------~~~l~~~l  307 (460)
T d1z7xw1         241 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD-EG------------ARLLCETL  307 (460)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHH-HH------------HHHHHHHH
T ss_pred             cccchhhcccccccccccccccccccccccccccccccccccccccccccccccccc-cc------------cchhhccc
Confidence            1110   11123455677777777766533222222   222333333333322100 00            00000011


Q ss_pred             hhhcccccEEeccCcccCCCcch----hhcCCCCCcEEEccCCcCccCch----hhhh-cCCCcCEEEccCCcccccCc-
Q 044176          272 KRIITIFTTIDLSSNQFQGEIPQ----VLGDFKSLIVLNLSHNGLTGSIP----VSFA-NMIVLESLDLSSNKLHGRIP-  341 (362)
Q Consensus       272 ~~~~~~L~~L~l~~n~~~~~~~~----~~~~~~~L~~L~l~~n~i~~~~~----~~~~-~~~~L~~L~l~~n~~~~~~~-  341 (362)
                      ......|+.+++++|.+++....    .+...++|++|+|++|++++...    +++. ..+.|++|++++|++++... 
T Consensus       308 ~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~  387 (460)
T d1z7xw1         308 LEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCS  387 (460)
T ss_dssp             TSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH
T ss_pred             cccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHH
Confidence            11245799999999998766433    34556789999999999975433    3333 46789999999999986433 


Q ss_pred             ---hhhhhhHhhhccCCCccccCC
Q 044176          342 ---EQFVDAEICSSFARPDLYTNA  362 (362)
Q Consensus       342 ---~~~~~l~~L~~l~~~~l~~n~  362 (362)
                         +.+...++|++|   ++++|+
T Consensus       388 ~l~~~l~~~~~L~~L---~Ls~N~  408 (460)
T d1z7xw1         388 SLAATLLANHSLREL---DLSNNC  408 (460)
T ss_dssp             HHHHHHHHCCCCCEE---ECCSSS
T ss_pred             HHHHHHhcCCCCCEE---ECCCCc
Confidence               333444445555   788774

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.64  E-value=1.8e-16  Score=125.81  Aligned_cols=127  Identities=24%  Similarity=0.234  Sum_probs=81.6

Q ss_pred             CcEEEcCCCcccccccCCcCCCcEEEccCCcCCCC----CCCCCCCccEEEccCcccccCCcccccCCCCCCEEEcccCc
Q 044176           21 LTYLDISNNFLTQIEQHPWKNITVLNLQNNTIQGT----ILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNN   96 (362)
Q Consensus        21 L~~L~ls~~~i~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~   96 (362)
                      .+.+++++++++.+|....+++++|++++|.|+..    .+..+++|++|++++|.+....+..|..+++|++|++++|+
T Consensus        10 ~~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~   89 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK   89 (192)
T ss_dssp             TTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             CCEEEEeCCCcCccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecccc
Confidence            45788888888888876667788888888877542    22336677777777777766666667777777777777777


Q ss_pred             ccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccC
Q 044176           97 LSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRG  149 (362)
Q Consensus        97 ~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  149 (362)
                      ++ .++...+...++|++|++++|.++...+..|. .+++|+++++++|.+..
T Consensus        90 l~-~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~-~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          90 IK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFE-HLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CC-EECSSSSTTCTTCCEEECCSSCCCEECTTSST-TCTTCCEEECTTCCBCC
T ss_pred             cc-ccCHHHHhCCCcccccccCCccccccCHHHhc-CCccccccccccccccc
Confidence            76 44443333235677777777766632233333 33666666666666653

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.63  E-value=2.1e-15  Score=119.61  Aligned_cols=132  Identities=23%  Similarity=0.243  Sum_probs=83.3

Q ss_pred             CEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEcc
Q 044176           88 EYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVG  167 (362)
Q Consensus        88 ~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  167 (362)
                      ++++.++++++ .+|..+.   +.+++|++++|+++...+...+..+++|++|++++|.+....+..+..++.|+.|+++
T Consensus        11 ~~v~Cs~~~L~-~iP~~lp---~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEEeCCCcC-ccCCCCC---CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            35666666666 6665542   3566667776666543433333334667777777777665666666667777777777


Q ss_pred             CCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCcccCCC
Q 044176          168 NNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFTGFL  225 (362)
Q Consensus       168 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  225 (362)
                      +|++....+.+|.++++|++|+|++|.++...+..  |..+++|+++++++|.+....
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~--f~~l~~L~~l~L~~N~~~~~~  142 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGS--FEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTS--STTCTTCCEEECTTCCBCCSG
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHH--hcCCccccccccccccccccc
Confidence            77776555666677777777777777776544443  356667777777777765433

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.60  E-value=2.2e-15  Score=130.97  Aligned_cols=143  Identities=16%  Similarity=0.157  Sum_probs=91.6

Q ss_pred             cCCCCcEEEccCCCCCCCc----chhccCCCCCCeEEccCCcCCCccc---cccccccCCcccEEeccCCcccCCCchhH
Q 044176          157 DCTGLEVVNVGNNMIGDTF----PSWLGSLPGLKILVLRSNRFYGPLC---EVNIMLPFEALRIIDLSHNEFTGFLPRWI  229 (362)
Q Consensus       157 ~l~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~n~~~~~~~---~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  229 (362)
                      ..+.|+.+++++|.+....    ...+..++.|++|+++.|.+.....   ....+..+++|+.|++++|.+.......+
T Consensus       156 ~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L  235 (344)
T d2ca6a1         156 NAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL  235 (344)
T ss_dssp             TCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH
T ss_pred             cCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccc
Confidence            3567777777777664332    2234456778888888877754211   11234667788888888887652211111


Q ss_pred             HhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCcccCCCcchh----hc--CCCCCc
Q 044176          230 FVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSNQFQGEIPQV----LG--DFKSLI  303 (362)
Q Consensus       230 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~----~~--~~~~L~  303 (362)
                      ...+                                       ..+++|+.|++++|.+++.....    +.  ..+.|+
T Consensus       236 ~~~l---------------------------------------~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~  276 (344)
T d2ca6a1         236 AIAL---------------------------------------KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQ  276 (344)
T ss_dssp             HHHG---------------------------------------GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCC
T ss_pred             cccc---------------------------------------cccccchhhhhhcCccCchhhHHHHHHhhhccCCCCC
Confidence            1111                                       11567889999999987653333    33  246799


Q ss_pred             EEEccCCcCccCc----hhhh-hcCCCcCEEEccCCcccc
Q 044176          304 VLNLSHNGLTGSI----PVSF-ANMIVLESLDLSSNKLHG  338 (362)
Q Consensus       304 ~L~l~~n~i~~~~----~~~~-~~~~~L~~L~l~~n~~~~  338 (362)
                      +|++++|+|+...    ...+ .+++.|++|++++|++.+
T Consensus       277 ~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         277 TLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             EEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             EEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            9999999987533    3334 367899999999999985

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=8.5e-16  Score=129.61  Aligned_cols=243  Identities=15%  Similarity=0.147  Sum_probs=160.9

Q ss_pred             CEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCC-CchhhhcCCCCcEEEc
Q 044176           88 EYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGS-FPRYLADCTGLEVVNV  166 (362)
Q Consensus        88 ~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l  166 (362)
                      +++|++++.+.......+..  .....+.+.+..+....... .. ...|++|+++++.++.. +...+..+++|++|++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~--~~~~~lrl~~~~~~~~~~~~-~~-~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L   78 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPLAEH-FS-PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL   78 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH--TTCSEEECTTCEECSCCCSC-CC-CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred             CEEECCCCCCCchHHHHHHh--ccceEeeccccccccchhhh-cc-CCCCCEEECCCCccCHHHHHHHHHhCCCcccccc
Confidence            47899988775322222222  23556666665544222222 22 25899999999987643 3445678999999999


Q ss_pred             cCCCCCCCcchhccCCCCCCeEEccCCc-CCCccccccccccCCcccEEeccCCc-ccCCCchh-HHhhhhhhhhccccC
Q 044176          167 GNNMIGDTFPSWLGSLPGLKILVLRSNR-FYGPLCEVNIMLPFEALRIIDLSHNE-FTGFLPRW-IFVSLETMKNVDEKG  243 (362)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~-~~~~~~~l~~l~~~~  243 (362)
                      .++.+.+..+..+..+++|++|++++|. +++..... ....+++|++|+++++. +++..... ....++.++.+++.+
T Consensus        79 ~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~-l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~  157 (284)
T d2astb2          79 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT-LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG  157 (284)
T ss_dssp             TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHH-HHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred             cccCCCcHHHHHHhcCCCCcCccccccccccccccch-hhHHHHhccccccccccccccccchhhhcccccccchhhhcc
Confidence            9999887778888899999999999964 43221111 12568999999999864 43222222 223346777777665


Q ss_pred             CCcccccCCccccccceeeeecCcchHhhhhcccccEEeccCc-ccCCCcchhhcCCCCCcEEEccCC-cCccCchhhhh
Q 044176          244 SDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLSSN-QFQGEIPQVLGDFKSLIVLNLSHN-GLTGSIPVSFA  321 (362)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n-~~~~~~~~~~~~~~~L~~L~l~~n-~i~~~~~~~~~  321 (362)
                      +.....               +.....+...+++|+.|++++| .+++.....+..+++|++|++++| .+++.....+.
T Consensus       158 ~~~~i~---------------~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~  222 (284)
T d2astb2         158 YRKNLQ---------------KSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELG  222 (284)
T ss_dssp             CGGGSC---------------HHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGG
T ss_pred             cccccc---------------cccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHh
Confidence            421000               0111223344889999999987 578777788889999999999996 67777777789


Q ss_pred             cCCCcCEEEccCCcccccCch-hhhhhHhhh
Q 044176          322 NMIVLESLDLSSNKLHGRIPE-QFVDAEICS  351 (362)
Q Consensus       322 ~~~~L~~L~l~~n~~~~~~~~-~~~~l~~L~  351 (362)
                      ++|+|++|+++++ +++..-+ ....+++|+
T Consensus       223 ~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L~  252 (284)
T d2astb2         223 EIPTLKTLQVFGI-VPDGTLQLLKEALPHLQ  252 (284)
T ss_dssp             GCTTCCEEECTTS-SCTTCHHHHHHHSTTSE
T ss_pred             cCCCCCEEeeeCC-CCHHHHHHHHHhCcccc
Confidence            9999999999998 4433322 223455554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.56  E-value=1.7e-15  Score=131.71  Aligned_cols=245  Identities=18%  Similarity=0.196  Sum_probs=147.9

Q ss_pred             cccccCCCCCCEEEcccCccccc----CCCCcccccccccEEEcccccccC---cch-------hhhhcCCCCccEEecc
Q 044176           78 PPSIYSLSSLEYISLSHNNLSGT----IPPCLGNFSTQLTILHLNNNYLQG---RIP-------DAFANGSCDLRSLGLN  143 (362)
Q Consensus        78 ~~~~~~l~~L~~L~L~~~~~~~~----~~~~l~~~~~~L~~L~l~~~~~~~---~~~-------~~~~~~~~~L~~L~l~  143 (362)
                      ...+.+...+++|+|++|.+...    +...+... ++|+.++++++....   ..+       ..+.. .++|++|+++
T Consensus        24 ~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~-~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~~L~~L~L~  101 (344)
T d2ca6a1          24 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK-KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLK-CPKLHTVRLS  101 (344)
T ss_dssp             SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTC-TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTT-CTTCCEEECC
T ss_pred             HHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhC-CCCCEEECCCCcccccccccchHHHHHHHHHhh-CCCccccccc
Confidence            34455667777777777766532    22223333 567777776654321   111       22222 3678888888


Q ss_pred             CCcccCCCc----hhhhcCCCCcEEEccCCCCCCCcchh-------------ccCCCCCCeEEccCCcCCCcccccc--c
Q 044176          144 SNKLRGSFP----RYLADCTGLEVVNVGNNMIGDTFPSW-------------LGSLPGLKILVLRSNRFYGPLCEVN--I  204 (362)
Q Consensus       144 ~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~-------------~~~~~~L~~L~l~~n~~~~~~~~~~--~  204 (362)
                      +|.++....    ..+...+.|+.|++++|.+.......             ....+.|+.+.++.|.+.......+  +
T Consensus       102 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~  181 (344)
T d2ca6a1         102 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT  181 (344)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred             ccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccch
Confidence            887765422    33456788888888888764321111             1346788888888887754322221  3


Q ss_pred             cccCCcccEEeccCCcccCCCchhHHhhhhhhhhccccCCCcccccCCccccccceeeeecCcchHhhhhcccccEEecc
Q 044176          205 MLPFEALRIIDLSHNEFTGFLPRWIFVSLETMKNVDEKGSDGLYMQGEEDYYQDSVTVTVKGRDLVLKRIITIFTTIDLS  284 (362)
Q Consensus       205 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  284 (362)
                      +..++.++++++++|.+..+.....+.                                      ......++|+.|+++
T Consensus       182 l~~~~~L~~L~L~~n~i~~~g~~~~l~--------------------------------------~~l~~~~~L~~L~Ls  223 (344)
T d2ca6a1         182 FQSHRLLHTVKMVQNGIRPEGIEHLLL--------------------------------------EGLAYCQELKVLDLQ  223 (344)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHH--------------------------------------TTGGGCTTCCEEECC
T ss_pred             hhhhhhhcccccccccccccccccchh--------------------------------------hhhcchhhhcccccc
Confidence            455678888888888776321111000                                      001126789999999


Q ss_pred             CcccCCC----cchhhcCCCCCcEEEccCCcCccCchhh----hhc--CCCcCEEEccCCcccccCchhhhhh-H-hhhc
Q 044176          285 SNQFQGE----IPQVLGDFKSLIVLNLSHNGLTGSIPVS----FAN--MIVLESLDLSSNKLHGRIPEQFVDA-E-ICSS  352 (362)
Q Consensus       285 ~n~~~~~----~~~~~~~~~~L~~L~l~~n~i~~~~~~~----~~~--~~~L~~L~l~~n~~~~~~~~~~~~l-~-~L~~  352 (362)
                      +|.+++.    +...+..+++|++|+|++|.+++.....    +..  .+.|++|++++|++++.....+... . .+..
T Consensus       224 ~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~  303 (344)
T d2ca6a1         224 DNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD  303 (344)
T ss_dssp             SSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTT
T ss_pred             cccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCC
Confidence            9998654    3455678899999999999998654433    333  4679999999999986543333331 1 2334


Q ss_pred             cCCCccccCC
Q 044176          353 FARPDLYTNA  362 (362)
Q Consensus       353 l~~~~l~~n~  362 (362)
                      |...++++|+
T Consensus       304 L~~L~l~~N~  313 (344)
T d2ca6a1         304 LLFLELNGNR  313 (344)
T ss_dssp             CCEEECTTSB
T ss_pred             CCEEECCCCc
Confidence            4455777774

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=2.9e-14  Score=109.17  Aligned_cols=130  Identities=15%  Similarity=0.147  Sum_probs=62.9

Q ss_pred             ccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCC
Q 044176           81 IYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTG  160 (362)
Q Consensus        81 ~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~  160 (362)
                      |.++.++++|+|++|+++ .++.....+ ++|++|++++|.+. .++ .+. .+++|++|++++|.++...+..+..++.
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~~~~~l-~~L~~L~Ls~N~i~-~l~-~~~-~l~~L~~L~ls~N~i~~l~~~~~~~l~~   88 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIENLGATL-DQFDAIDFSDNEIR-KLD-GFP-LLRRLKTLLVNNNRICRIGEGLDQALPD   88 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGGGGT-TCCSEEECCSSCCC-EEC-CCC-CCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             ccCcCcCcEEECCCCCCC-ccCcccccc-ccCCEEECCCCCCC-ccC-Ccc-cCcchhhhhcccccccCCCccccccccc
Confidence            334445555555555554 443322222 45555555555554 222 122 2255555555555555333334445555


Q ss_pred             CcEEEccCCCCCCCc-chhccCCCCCCeEEccCCcCCCcccc-ccccccCCcccEEe
Q 044176          161 LEVVNVGNNMIGDTF-PSWLGSLPGLKILVLRSNRFYGPLCE-VNIMLPFEALRIID  215 (362)
Q Consensus       161 L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~~~L~~L~  215 (362)
                      |+.|++++|.+.+.. ...+..+++|+++++++|+++..... ...+..+++|+.||
T Consensus        89 L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          89 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            666666655554321 13355566666666666665432210 11235566666665

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=3e-14  Score=109.08  Aligned_cols=126  Identities=21%  Similarity=0.199  Sum_probs=89.6

Q ss_pred             CCCccEEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccE
Q 044176           60 PPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRS  139 (362)
Q Consensus        60 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  139 (362)
                      +.++++|++++|.++. ++..+..+++|+.|++++|+++ .++ .+..+ ++|++|++++|.+. .++..+...+++|++
T Consensus        17 ~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l-~~L~~L~ls~N~i~-~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          17 AVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIR-KLD-GFPLL-RRLKTLLVNNNRIC-RIGEGLDQALPDLTE   91 (162)
T ss_dssp             TTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCC-EEC-CCCCC-SSCCEEECCSSCCC-EECSCHHHHCTTCCE
T ss_pred             cCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCC-ccC-CcccC-cchhhhhccccccc-CCCcccccccccccc
Confidence            5678888888888874 4555677888888888888887 554 35555 68888888888887 455444444478888


Q ss_pred             EeccCCcccCCCc-hhhhcCCCCcEEEccCCCCCCCc---chhccCCCCCCeEEc
Q 044176          140 LGLNSNKLRGSFP-RYLADCTGLEVVNVGNNMIGDTF---PSWLGSLPGLKILVL  190 (362)
Q Consensus       140 L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~l  190 (362)
                      |++++|.+.+... ..+..+++|+.+++.+|.++...   +..+..+|+|+.||-
T Consensus        92 L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          92 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             ceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence            8888888874322 45677888888888888774432   224667788887763

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.47  E-value=3.6e-13  Score=97.96  Aligned_cols=101  Identities=27%  Similarity=0.394  Sum_probs=51.5

Q ss_pred             EEEccCcccccCCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccC
Q 044176           65 AFLFSNNKLFGQIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNS  144 (362)
Q Consensus        65 ~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  144 (362)
                      .|++++|.++. ++ .+.++++|++|++++|+++ .+|..+..+ ++|++|++++|.++ .+| .+.. +++|+++++++
T Consensus         2 ~L~Ls~n~l~~-l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l-~~L~~L~l~~N~i~-~l~-~~~~-l~~L~~L~l~~   74 (124)
T d1dcea3           2 VLHLAHKDLTV-LC-HLEQLLLVTHLDLSHNRLR-ALPPALAAL-RCLEVLQASDNALE-NVD-GVAN-LPRLQELLLCN   74 (124)
T ss_dssp             EEECTTSCCSS-CC-CGGGGTTCCEEECCSSCCC-CCCGGGGGC-TTCCEEECCSSCCC-CCG-GGTT-CSSCCEEECCS
T ss_pred             EEEcCCCCCCC-Cc-ccccCCCCCEEECCCCccC-cchhhhhhh-hccccccccccccc-ccC-cccc-ccccCeEECCC
Confidence            34444444442 22 2455555555555555555 455544444 45555555555554 233 2332 25566666666


Q ss_pred             CcccCCC-chhhhcCCCCcEEEccCCCCC
Q 044176          145 NKLRGSF-PRYLADCTGLEVVNVGNNMIG  172 (362)
Q Consensus       145 ~~~~~~~-~~~~~~l~~L~~L~l~~~~~~  172 (362)
                      |+++... ...+..+++|+.+++++|.++
T Consensus        75 N~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          75 NRLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            6555322 134555566666666665553

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.46  E-value=3.1e-13  Score=98.34  Aligned_cols=103  Identities=26%  Similarity=0.295  Sum_probs=67.7

Q ss_pred             CEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEcc
Q 044176           88 EYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNVG  167 (362)
Q Consensus        88 ~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  167 (362)
                      |+|++++|+++ .++ .+..+ ++|++|++++|.++ .+|..+... ++|++|++++|.+++ ++ .+..+++|+.++++
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l-~~L~~L~ls~N~l~-~lp~~~~~l-~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~   73 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQL-LLVTHLDLSHNRLR-ALPPALAAL-RCLEVLQASDNALEN-VD-GVANLPRLQELLLC   73 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGG-TTCCEEECCSSCCC-CCCGGGGGC-TTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred             CEEEcCCCCCC-CCc-ccccC-CCCCEEECCCCccC-cchhhhhhh-hcccccccccccccc-cC-ccccccccCeEECC
Confidence            46778888887 554 35555 57777777777776 566666543 677777777777763 33 46677777777777


Q ss_pred             CCCCCCCc-chhccCCCCCCeEEccCCcCCC
Q 044176          168 NNMIGDTF-PSWLGSLPGLKILVLRSNRFYG  197 (362)
Q Consensus       168 ~~~~~~~~-~~~~~~~~~L~~L~l~~n~~~~  197 (362)
                      +|++.+.. ...+..+++|+.+++++|++++
T Consensus        74 ~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          74 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             CCccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            77765432 2345666667777776666653

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.33  E-value=7.3e-14  Score=110.72  Aligned_cols=133  Identities=25%  Similarity=0.350  Sum_probs=92.9

Q ss_pred             CCcccccCCCCCCEEEcccCcccccCCCCcccccccccEEEcccccccCcchhhhhcCCCCccEEeccCCcccCCCchhh
Q 044176           76 QIPPSIYSLSSLEYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNYLQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYL  155 (362)
Q Consensus        76 ~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  155 (362)
                      .++..+..+++|++|++++|+++ .++ .+..+ ++|++|++++|.+. .+|...... +.|++|++++|.++. + ..+
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l-~~L~~L~Ls~N~i~-~i~~~~~~~-~~L~~L~l~~N~i~~-l-~~~  111 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIE-KIS-SLSGM-ENLRILSLGRNLIK-KIENLDAVA-DTLEELWISYNQIAS-L-SGI  111 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEES-CCC-CHHHH-TTCCEEECCEEEEC-SCSSHHHHH-HHCCEEECSEEECCC-H-HHH
T ss_pred             hhhhHHhcccccceeECcccCCC-Ccc-cccCC-ccccChhhcccccc-ccccccccc-ccccccccccccccc-c-ccc
Confidence            34566778888888888888887 564 46665 68888888888886 455443332 578888888888873 2 357


Q ss_pred             hcCCCCcEEEccCCCCCCCcc-hhccCCCCCCeEEccCCcCCCcccccc--------ccccCCcccEEe
Q 044176          156 ADCTGLEVVNVGNNMIGDTFP-SWLGSLPGLKILVLRSNRFYGPLCEVN--------IMLPFEALRIID  215 (362)
Q Consensus       156 ~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~--------~~~~~~~L~~L~  215 (362)
                      ..+++|+.|++++|.+.+... ..+..+++|++|++++|++........        .+..+|+|+.||
T Consensus       112 ~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         112 EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            778888888888888855422 457788888888888887754332221        135677888876

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.27  E-value=3.2e-13  Score=106.94  Aligned_cols=67  Identities=19%  Similarity=0.192  Sum_probs=37.9

Q ss_pred             CchhhhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccccccccCCcccEEeccCCccc
Q 044176          151 FPRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEVNIMLPFEALRIIDLSHNEFT  222 (362)
Q Consensus       151 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  222 (362)
                      ++..+..+++|+.|++++|.+.+.  ..+..+++|++|++++|.+.... ...  ..+++|++|++++|.+.
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~~i--~~l~~l~~L~~L~Ls~N~i~~i~-~~~--~~~~~L~~L~l~~N~i~  106 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIKKIE-NLD--AVADTLEELWISYNQIA  106 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEESCC--CCHHHHTTCCEEECCEEEECSCS-SHH--HHHHHCCEEECSEEECC
T ss_pred             hhhHHhcccccceeECcccCCCCc--ccccCCccccChhhccccccccc-ccc--ccccccccccccccccc
Confidence            445666677777777777666443  23556666666666666655421 111  22345666666666555

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=1.6e-10  Score=87.32  Aligned_cols=101  Identities=20%  Similarity=0.078  Sum_probs=61.9

Q ss_pred             CCcEEEcCCCccccccc--CCcCCCcEEEccCC-cCCC---CCCCCCCCccEEEccCcccccCCcccccCCCCCCEEEcc
Q 044176           20 SLTYLDISNNFLTQIEQ--HPWKNITVLNLQNN-TIQG---TILVPPPSTRAFLFSNNKLFGQIPPSIYSLSSLEYISLS   93 (362)
Q Consensus        20 ~L~~L~ls~~~i~~~~~--~~~~~L~~L~l~~n-~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~   93 (362)
                      ..+.++++++.+++.+.  ..+++|++|+++++ .++.   ..+.++++|+.|++++|.+..+.+.+|..+++|++|+|+
T Consensus         9 ~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3           9 GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            34557777777666654  24556677777544 3442   334456666666666666666656666666666666666


Q ss_pred             cCcccccCCCCcccccccccEEEcccccc
Q 044176           94 HNNLSGTIPPCLGNFSTQLTILHLNNNYL  122 (362)
Q Consensus        94 ~~~~~~~~~~~l~~~~~~L~~L~l~~~~~  122 (362)
                      +|+++ .+|...+.. .+|++|++++|++
T Consensus        89 ~N~l~-~l~~~~~~~-~~l~~L~L~~Np~  115 (156)
T d2ifga3          89 FNALE-SLSWKTVQG-LSLQELVLSGNPL  115 (156)
T ss_dssp             SSCCS-CCCSTTTCS-CCCCEEECCSSCC
T ss_pred             CCCCc-ccChhhhcc-ccccccccCCCcc
Confidence            66666 566655554 2566666666655

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=6.1e-10  Score=84.03  Aligned_cols=81  Identities=21%  Similarity=0.153  Sum_probs=35.0

Q ss_pred             CEEEcccCcccccCCCCcccccccccEEEccccc-ccCcchhhhhcCCCCccEEeccCCcccCCCchhhhcCCCCcEEEc
Q 044176           88 EYISLSHNNLSGTIPPCLGNFSTQLTILHLNNNY-LQGRIPDAFANGSCDLRSLGLNSNKLRGSFPRYLADCTGLEVVNV  166 (362)
Q Consensus        88 ~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  166 (362)
                      ..++.+++.+. ..|..+..+ ++|++|++.+++ ++ .++...+..+++|++|++++|.++...+.+|..+++|+.|++
T Consensus        11 ~~l~c~~~~~~-~~p~~l~~l-~~l~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3          11 SGLRCTRDGAL-DSLHHLPGA-ENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SCEECCSSCCC-TTTTTSCSC-SCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CeEEecCCCCc-cCcccccCc-cccCeeecCCCcccc-ccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence            34455554444 444444333 345555554332 33 222221122244555555555444333444444444444444


Q ss_pred             cCCCC
Q 044176          167 GNNMI  171 (362)
Q Consensus       167 ~~~~~  171 (362)
                      ++|++
T Consensus        88 s~N~l   92 (156)
T d2ifga3          88 SFNAL   92 (156)
T ss_dssp             CSSCC
T ss_pred             cCCCC
Confidence            44444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=8.9e-08  Score=72.33  Aligned_cols=85  Identities=21%  Similarity=0.179  Sum_probs=65.6

Q ss_pred             hcccccEEeccCcccCCCc--chhhcCCCCCcEEEccCCcCccCchhhhhcCCCcCEEEccCCcccccCch-------hh
Q 044176          274 IITIFTTIDLSSNQFQGEI--PQVLGDFKSLIVLNLSHNGLTGSIPVSFANMIVLESLDLSSNKLHGRIPE-------QF  344 (362)
Q Consensus       274 ~~~~L~~L~l~~n~~~~~~--~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-------~~  344 (362)
                      .++.|+.|++++|++++..  +..+..+++|+.|++++|.|.+.-+-.+.+...|+.|++++|+++....+       .+
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~  142 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIR  142 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHH
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHH
Confidence            4789999999999998643  45577899999999999999954443455567899999999999865443       25


Q ss_pred             hhhHhhhccCCCcc
Q 044176          345 VDAEICSSFARPDL  358 (362)
Q Consensus       345 ~~l~~L~~l~~~~l  358 (362)
                      ..+|+|+.|+-..+
T Consensus       143 ~~~P~L~~LDg~~v  156 (162)
T d1koha1         143 ERFPKLLRLDGHEL  156 (162)
T ss_dssp             TTSTTCCEETTEEC
T ss_pred             HHCCCCCEECcCCC
Confidence            56788888765443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.23  E-value=6.6e-07  Score=67.78  Aligned_cols=63  Identities=10%  Similarity=0.082  Sum_probs=44.1

Q ss_pred             cccccEEeccCcccCCCc----chhhcCCCCCcEEEccCCcCccC-------chhhhhcCCCcCEEEccCCccc
Q 044176          275 ITIFTTIDLSSNQFQGEI----PQVLGDFKSLIVLNLSHNGLTGS-------IPVSFANMIVLESLDLSSNKLH  337 (362)
Q Consensus       275 ~~~L~~L~l~~n~~~~~~----~~~~~~~~~L~~L~l~~n~i~~~-------~~~~~~~~~~L~~L~l~~n~~~  337 (362)
                      .+.|+.|++++|.+++..    ...+...+.|++|++++|.+...       +...+...++|+.|+++.+...
T Consensus        71 n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~~  144 (167)
T d1pgva_          71 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  144 (167)
T ss_dssp             CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             cccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCch
Confidence            456788888888876543    33456668899999988765532       3455677889999999876544

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=1.2e-07  Score=71.54  Aligned_cols=83  Identities=20%  Similarity=0.144  Sum_probs=56.2

Q ss_pred             CCCCccEEeccCCcccCCC--chhhhcCCCCcEEEccCCCCCCCcchhccCCCCCCeEEccCCcCCCccccc-----ccc
Q 044176          133 GSCDLRSLGLNSNKLRGSF--PRYLADCTGLEVVNVGNNMIGDTFPSWLGSLPGLKILVLRSNRFYGPLCEV-----NIM  205 (362)
Q Consensus       133 ~~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-----~~~  205 (362)
                      .++.|++|++++|++++..  +..+..+++|+.|++++|.+.+...........|+.+++++|++.......     ..+
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~  142 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIR  142 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHH
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHH
Confidence            3478888888888887542  345677888888888888886554433334557888888888876533221     123


Q ss_pred             ccCCcccEEe
Q 044176          206 LPFEALRIID  215 (362)
Q Consensus       206 ~~~~~L~~L~  215 (362)
                      ..+|+|+.||
T Consensus       143 ~~~P~L~~LD  152 (162)
T d1koha1         143 ERFPKLLRLD  152 (162)
T ss_dssp             TTSTTCCEET
T ss_pred             HHCCCCCEEC
Confidence            5677777775

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.93  E-value=5.1e-06  Score=62.69  Aligned_cols=64  Identities=16%  Similarity=0.121  Sum_probs=49.9

Q ss_pred             cccccEEeccCcccCCC----cchhhcCCCCCcEEEccCCcCccCc----hhhhhcCCCcCEEEccCCcccc
Q 044176          275 ITIFTTIDLSSNQFQGE----IPQVLGDFKSLIVLNLSHNGLTGSI----PVSFANMIVLESLDLSSNKLHG  338 (362)
Q Consensus       275 ~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~i~~~~----~~~~~~~~~L~~L~l~~n~~~~  338 (362)
                      .+.|+.|++++|.+++.    +...+...+.|++|+|++|.+++..    ..++...++|++|++++|++..
T Consensus        43 n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~  114 (167)
T d1pgva_          43 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSV  114 (167)
T ss_dssp             CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCC
T ss_pred             CCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCC
Confidence            45688999999988753    3345667799999999999998533    3456778999999999997664

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.87  E-value=6.8e-06  Score=61.93  Aligned_cols=63  Identities=17%  Similarity=0.179  Sum_probs=44.4

Q ss_pred             cccccEEeccCcccCCCc----chhhcCCCCCcEEEcc--CCcCcc----CchhhhhcCCCcCEEEccCCccc
Q 044176          275 ITIFTTIDLSSNQFQGEI----PQVLGDFKSLIVLNLS--HNGLTG----SIPVSFANMIVLESLDLSSNKLH  337 (362)
Q Consensus       275 ~~~L~~L~l~~n~~~~~~----~~~~~~~~~L~~L~l~--~n~i~~----~~~~~~~~~~~L~~L~l~~n~~~  337 (362)
                      .++++.+++++|.+++..    ...+...++|+.++|.  +|.+.+    .+...+..++.|++|+++.+...
T Consensus        73 ~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~~  145 (166)
T d1io0a_          73 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  145 (166)
T ss_dssp             CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             cccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCCc
Confidence            456888888888876543    3456677889887664  556654    34455678899999999877654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.45  E-value=2.8e-05  Score=58.39  Aligned_cols=37  Identities=14%  Similarity=0.240  Sum_probs=21.5

Q ss_pred             ccccEEec--cCcccCCC----cchhhcCCCCCcEEEccCCcC
Q 044176          276 TIFTTIDL--SSNQFQGE----IPQVLGDFKSLIVLNLSHNGL  312 (362)
Q Consensus       276 ~~L~~L~l--~~n~~~~~----~~~~~~~~~~L~~L~l~~n~i  312 (362)
                      ++|+.++|  ++|.+++.    +...+...++|+.|+++.+..
T Consensus       102 ~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_         102 TSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             SSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             ccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            44555444  44555442    344456678888888876643