Citrus Sinensis ID: 044205

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190--
Protein Sequence
MNLQRQVFRQNRLRNQAIKPCDVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVFSPTYCQSYFCLHELALMMETKKKVIPIFCDIKPSQLLVIDDGKCSANELRRFSWALEEAKFTVGLTFDSLKGNWSDIVTSASDIIIRSLMEIDYKEQRHWRRQNSTPMLI
Secondary Structure (PSIPRED)
ccHHHHHHHHccccccccccccEEEcccccccccccHHHHHHHHHHcccccccccccccccccccHHHHHHHHHccEEEEEEcccccccHHHHHHHHHHHHcccEEEEEEccccccccEEcccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHccccccccccccEEEEcccccHcHHHHHHHHHHHHHHHccccEEcccHHcccccccHHHHHHHHHHccEEEEEEEccccccHHHHHHHHHHHHHccEEEEEEEEccccHcccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHcHHHHHHHHHHHHHHHHHHcccccHHHHcHHcHHHHHHHc
Coil and Loop (DISEMBL)
MNLQRQVFRQNRlrnqaikpcdvfinhrgidtKRKVATLLYDHLsrlnlrpfldnknmkpgdklFDNINRAIRNCKVGVAVFSPTYCQSYFCLHELALMMETKKKVipifcdikpsqllviddgkcsaNELRRFSWALEEAKFTVGLtfdslkgnwsdiVTSASDIIIRSLMEIDYKeqrhwrrqnstpmli
Flexible Loop (DISEMBL)
mnlqrqvfrqnrlrnqaikpcdvfinhrgidtKRKVATLLYDHLSrlnlrpfldnknmkpgDKLFDNINRAIRNCKVGVAVFSPTYCQSYFCLHELALMMETKKKVIPIFCDIKPSQLLVIDDGKCSANELRRFSWALEEAKFTVGLtfdslkgnwsDIVTSASDIIIRSLMEIDykeqrhwrrqnstpmli
Low Complexity Region (SEG)
MNLQRQVFRQNRLRNQAIKPCDVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVFSPTYCQSYFCLHELALMMETKKKVIPIFCDIKPSQLLVIDDGKCSANELRRFSWALEEAKFTVGLTFDSLKGNWSDIVTSASDIIIRSLMEIDYKEQRHWRRQNSTPMLI
Disordered region (IsUnstruct)
************LRNQAIKPCDVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVFSPTYCQSYFCLHELALMMETKKKVIPIFCDIKPSQLLVIDDGKCSANELRRFSWALEEAKFTVGLTFDSLKGNWSDIVTSASDIIIRSLMEIDYKE**************
Disordered Region (DISOPRED)
**********************VFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVFSPTYCQSYFCLHELALMMETKKKVIPIFCDIKPSQLLVID********L*RFSWALEEAKFTVGLTFDSLKGNWSDIVTSASDIIIRSLME***********QNSTPMLI
Disordered Region (DISEMBL)
MNLQRQVFRQNRLRNQAIKPCDVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVFSPTYCQSYFCLHELALMMETKKKVIPIFCDIKPSQLLVIDDGKCSANELRRFSWALEEAKFTVGLTFDSLKGNWSDIVTSASDIIIRSLMEIDYKEQR************
Disordered Region (DISPRO)
***********RLRNQAIKPCDVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVFSPTYCQSYFCLHELALMMETKKKVIPIFCDIKPSQLLVIDDGKCSANELRRFSWALEEAKFTVGLTFDSLKGNWSDIVTSASDIIIRSLMEIDYKEQRHWRRQNSTPMLI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNLQRQVFRQNRLRNQAIKPCDVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVFSPTYCQSYFCLHELALMMETKKKVIPIFCDIKPSQLLVIDDGKCSANELRRFSWALEEAKFTVGLTFDSLKGNWSDIVTSASDIIIRSLMEIDYKEQRHWRRQNSTPMLI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	192	2.2.26 [Sep-21-2011]
Q40392	1144	TMV resistance protein N	N/A	no	0.572	0.096	0.333	5e-12
O82500	1095	Putative disease resistan	no	no	0.755	0.132	0.262	2e-06
Q9FHE8	392	Protein PHLOEM PROTEIN 2-	no	no	0.541	0.265	0.324	5e-06
Q9FHE9	354	Protein PHLOEM PROTEIN 2-	no	no	0.520	0.282	0.311	7e-06
Q9C5Q9	411	Protein PHLOEM PROTEIN 2-	no	no	0.437	0.204	0.308	3e-05

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score = 70.9 bits (172), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 66/123 (53%), Gaps = 13/123 (10%)

Query: 22  DVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAV 81
           DVF++ RG DT++   + LY+ L+   ++ F D+K ++ G  +   + +AI   +  + V
Sbjct: 13  DVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELCKAIEESQFAIVV 72

Query: 82  FSPTYCQSYFCLHELALMMETKKK----VIPIFCDIKPSQLLVIDDGKCSANELRRFSWA 137
           FS  Y  S +CL+EL  +ME K +    VIPIF D+ PS +          N+   F+ A
Sbjct: 73  FSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHV---------RNQKESFAKA 123

Query: 138 LEE 140
            EE
Sbjct: 124 FEE 126

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.
Nicotiana glutinosa (taxid: 35889)

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 71/160 (44%), Gaps = 15/160 (9%)

Query: 22  DVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAV 81
           DVF + RG D +    + L        +  F D+ ++K    +   +  AIR  K+ V +
Sbjct: 12  DVFPSFRGEDVRNNFLSHLLKEFESKGIVTFRDD-HIKRSHTIGHELRAAIRESKISVVL 70

Query: 82  FSPTYCQSYFCLHELALMMETKK----KVIPIFCDIKPSQL--------LVIDDGKCSAN 129
           FS  Y  S +CL EL  +M+ K+    KV+P+F  + PS +        +   +  C   
Sbjct: 71  FSENYASSSWCLDELIEIMKCKEEQGLKVMPVFYKVDPSDIRKQTGKFGMSFLETCCGKT 130

Query: 130 ELRRFSW--ALEEAKFTVGLTFDSLKGNWSDIVTSASDII 167
           E R+ +W  AL +A   +G    +       I T + D++
Sbjct: 131 EERQHNWRRALTDAANILGDHPQNWDNEAYKITTISKDVL 170

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE8|P2A06_ARATH Protein PHLOEM PROTEIN 2-LIKE A6 OS=Arabidopsis thaliana GN=PP2A6 PE=2 SV=1

 Score = 51.2 bits (121), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 60/111 (54%), Gaps = 7/111 (6%)

Query: 23  VFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVF 82
           VFI  RG D ++   + L   L   N+  F+D +N   G ++ + + R I   ++ + +F
Sbjct: 17  VFICFRGADVRKHFISFLVPALREANINVFID-ENEFLGSEMANLLTR-IEESELALVIF 74

Query: 83  SPTYCQSYFCLHELALMMETKKK----VIPIFCDIKPSQLLVIDDGKCSAN 129
           S  + +S+ CL+ELA + E K +    VIPIF  +KPS +  + +GK   N
Sbjct: 75  SVDFTRSHRCLNELAKIKERKDQGRLIVIPIFYKVKPSAVKFL-EGKFGDN 124

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE9|P2A08_ARATH Protein PHLOEM PROTEIN 2-LIKE A8 OS=Arabidopsis thaliana GN=PP2A8 PE=2 SV=1

 Score = 50.4 bits (119), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 6/106 (5%)

Query: 23  VFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVF 82
           VFIN RG D +    + L   +   N+  F+D   +   D +  N+   I+  +V V +F
Sbjct: 16  VFINFRGKDLRNGFLSFLEPAMREANINVFIDKDEVVGTDLV--NLFVRIQESRVAVVIF 73

Query: 83  SPTYCQSYFCLHELALMMETKKK----VIPIFCDIKPSQLLVIDDG 124
           S  Y  S +CL ELA + +   +     IPIF  + PS +L +  G
Sbjct: 74  SKDYTSSEWCLDELAEIKDCINQGGLNAIPIFYKLAPSSVLELKGG 119

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5Q9|P2A05_ARATH Protein PHLOEM PROTEIN 2-LIKE A5 OS=Arabidopsis thaliana GN=PP2A5 PE=2 SV=1

 Score = 48.1 bits (113), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 10/94 (10%)

Query: 23  VFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGD--KLFDNINRAIRNCKVGVA 80
           VFIN RG D ++   + L   L +  +  F+D +  +      LFD I  +    K+ + 
Sbjct: 24  VFINFRGKDLRKGFMSFLKPALKKEKINVFIDEQEERGKYLISLFDTIGES----KIALV 79

Query: 81  VFSPTYCQSYFCLHELALMMETKKK----VIPIF 110
           +FS  YC+S++C+ EL  + E   +    +IPIF
Sbjct: 80  IFSEGYCESHWCMDELVKIKEYMDQNRLIIIPIF 113

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	192
224128205	202	predicted protein [Populus trichocarpa]	0.984	0.935	0.709	2e-76
224115006	156	predicted protein [Populus trichocarpa]	0.812	1.0	0.833	3e-74
255582465	191	transmembrane receptor, putative [Ricinu	0.890	0.895	0.728	3e-73
302143050	174	unnamed protein product [Vitis vinifera]	0.817	0.902	0.777	1e-70
359493678	168	PREDICTED: TMV resistance protein N [Vit	0.817	0.934	0.777	1e-70
224078916	156	predicted protein [Populus trichocarpa]	0.812	1.0	0.724	8e-65
356519558	185	PREDICTED: TMV resistance protein N-like	0.901	0.935	0.647	4e-62
359496641	194	PREDICTED: TMV resistance protein N [Vit	0.942	0.932	0.612	9e-62
356544014	200	PREDICTED: uncharacterized protein LOC10	0.973	0.935	0.609	1e-61
351727789	204	uncharacterized protein LOC100526930 [Gl	0.875	0.823	0.680	2e-59

>gi|224128205|ref|XP_002329107.1| predicted protein [Populus trichocarpa] gi|222869776|gb|EEF06907.1| predicted protein [Populus trichocarpa]

 Score =  290 bits (743), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 139/196 (70%), Positives = 160/196 (81%), Gaps = 7/196 (3%)

Query: 1   MNLQRQVFRQNRLRNQAI-----KPCDVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDN 55
           +N  RQ  RQ      A+     KPCDVFINHRGIDTKR V TLLYDHL RLNL PFLDN
Sbjct: 7   VNFPRQFLRQYPSIQPAVTSRIAKPCDVFINHRGIDTKRTVVTLLYDHLFRLNLHPFLDN 66

Query: 56  KNMKPGDKLFDNINRAIRNCKVGVAVFSPTYCQSYFCLHELALMMETKKKVIPIFCDIKP 115
           KNMKPGDKLFDNIN AIR CKVGV VFSP YC+SYFCLHELAL+ME+KKKVIPIFCDIKP
Sbjct: 67  KNMKPGDKLFDNINSAIRKCKVGVTVFSPRYCESYFCLHELALIMESKKKVIPIFCDIKP 126

Query: 116 SQLLVIDDGKCSANELRRFSWALEEAKFTVGLTFDSLKGNWSDIVTSASDIIIRSLMEID 175
           SQL V++DGKC   ++RRF WALEEAK+TVGLTFDSLKGNWS++VTSASDI+I +L+E++
Sbjct: 127 SQLRVVNDGKCPMEDIRRFRWALEEAKYTVGLTFDSLKGNWSEVVTSASDIVIETLVELE 186

Query: 176 YKEQRHWRRQNSTPML 191
            ++Q   +R  STP+ 
Sbjct: 187 SEKQ--MQRHKSTPIF 200

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115006|ref|XP_002316915.1| predicted protein [Populus trichocarpa] gi|222859980|gb|EEE97527.1| predicted protein [Populus trichocarpa]

 Score =  283 bits (724), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 130/156 (83%), Positives = 145/156 (92%)

Query: 20  PCDVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGV 79
           PCDVFINHRGIDTKR VATLLYDHLSRLNL PFLDNKNMKPGDKLFDNIN AIR CKVGV
Sbjct: 1   PCDVFINHRGIDTKRTVATLLYDHLSRLNLHPFLDNKNMKPGDKLFDNINSAIRKCKVGV 60

Query: 80  AVFSPTYCQSYFCLHELALMMETKKKVIPIFCDIKPSQLLVIDDGKCSANELRRFSWALE 139
            VFSP YC+SYFCLHELAL+ME+KKKVIPIFCDIKPSQL V+++GKC   ++RRF+WALE
Sbjct: 61  TVFSPRYCESYFCLHELALIMESKKKVIPIFCDIKPSQLRVVNNGKCPMEDIRRFNWALE 120

Query: 140 EAKFTVGLTFDSLKGNWSDIVTSASDIIIRSLMEID 175
           EAK+TVGLTFDSLKGNWSD+VTSASDI+I +L+EI+
Sbjct: 121 EAKYTVGLTFDSLKGNWSDVVTSASDIVIETLLEIE 156

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582465|ref|XP_002532019.1| transmembrane receptor, putative [Ricinus communis] gi|223528314|gb|EEF30358.1| transmembrane receptor, putative [Ricinus communis]

 Score =  280 bits (715), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 126/173 (72%), Positives = 154/173 (89%), Gaps = 2/173 (1%)

Query: 13  LRNQAIKPCDVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAI 72
           + N+ ++PCDVFINHRG DTKR VATLLYDHLSRLNL PFLDNKNMKPGDKLF++IN AI
Sbjct: 1   MTNRVLQPCDVFINHRGTDTKRTVATLLYDHLSRLNLSPFLDNKNMKPGDKLFEHINEAI 60

Query: 73  RNCKVGVAVFSPTYCQSYFCLHELALMMETKKKVIPIFCDIKPSQLLVIDDGKCSANELR 132
           R CK+GVAVFSP YC+SYFCLHELALMMETKKKVIPIFCDIKPS++ ++D G CS  E++
Sbjct: 61  RQCKIGVAVFSPRYCESYFCLHELALMMETKKKVIPIFCDIKPSEIRIVDKGLCSEEEIK 120

Query: 133 RFSWALEEAKFTVGLTFDSLKGNWSDIVTSASDIIIRSLMEIDYKEQRHWRRQ 185
           +F+ A+EEAK+TVGLTFDSLKGNWS++VT+AS+I+I SL+EI  + ++H RR+
Sbjct: 121 KFNLAIEEAKYTVGLTFDSLKGNWSEVVTNASEIVIDSLIEI--QNEKHIRRR 171

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143050|emb|CBI20345.3| unnamed protein product [Vitis vinifera]

 Score =  271 bits (693), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 122/157 (77%), Positives = 143/157 (91%)

Query: 19  KPCDVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVG 78
           + CDVFINHRGIDTKR VATLLYDHL+ LN+RPFLDNK MKPGDKLFD I+ AIR CK+G
Sbjct: 11  QSCDVFINHRGIDTKRTVATLLYDHLTMLNMRPFLDNKTMKPGDKLFDKIDSAIRGCKIG 70

Query: 79  VAVFSPTYCQSYFCLHELALMMETKKKVIPIFCDIKPSQLLVIDDGKCSANELRRFSWAL 138
           VAVFSP YC+SYFCLHELAL ME+ KKVIPIFCD+KPSQL V+D+G CS NEL+RF+ AL
Sbjct: 71  VAVFSPHYCESYFCLHELALFMESNKKVIPIFCDVKPSQLRVVDNGSCSQNELQRFNRAL 130

Query: 139 EEAKFTVGLTFDSLKGNWSDIVTSASDIIIRSLMEID 175
           EEAK+TVGL+FDSLKGNWS++VTSASDI+I+SL+E++
Sbjct: 131 EEAKYTVGLSFDSLKGNWSEVVTSASDIVIKSLIELE 167

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493678|ref|XP_002282005.2| PREDICTED: TMV resistance protein N [Vitis vinifera]

 Score =  271 bits (692), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 122/157 (77%), Positives = 143/157 (91%)

Query: 19  KPCDVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVG 78
           + CDVFINHRGIDTKR VATLLYDHL+ LN+RPFLDNK MKPGDKLFD I+ AIR CK+G
Sbjct: 5   QSCDVFINHRGIDTKRTVATLLYDHLTMLNMRPFLDNKTMKPGDKLFDKIDSAIRGCKIG 64

Query: 79  VAVFSPTYCQSYFCLHELALMMETKKKVIPIFCDIKPSQLLVIDDGKCSANELRRFSWAL 138
           VAVFSP YC+SYFCLHELAL ME+ KKVIPIFCD+KPSQL V+D+G CS NEL+RF+ AL
Sbjct: 65  VAVFSPHYCESYFCLHELALFMESNKKVIPIFCDVKPSQLRVVDNGSCSQNELQRFNRAL 124

Query: 139 EEAKFTVGLTFDSLKGNWSDIVTSASDIIIRSLMEID 175
           EEAK+TVGL+FDSLKGNWS++VTSASDI+I+SL+E++
Sbjct: 125 EEAKYTVGLSFDSLKGNWSEVVTSASDIVIKSLIELE 161

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224078916|ref|XP_002305679.1| predicted protein [Populus trichocarpa] gi|222848643|gb|EEE86190.1| predicted protein [Populus trichocarpa]

 Score =  251 bits (642), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 113/156 (72%), Positives = 136/156 (87%)

Query: 20  PCDVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGV 79
           PCDVFINHR IDTKR ++ LL+DHLSRL L PFLD+KNM+PGDKLFDNI+RAI  CKVGV
Sbjct: 1   PCDVFINHRCIDTKRTISGLLFDHLSRLRLHPFLDSKNMRPGDKLFDNIDRAIHECKVGV 60

Query: 80  AVFSPTYCQSYFCLHELALMMETKKKVIPIFCDIKPSQLLVIDDGKCSANELRRFSWALE 139
           AVFSP YC SYFCLHELAL+METKK+VIPIFCD+KPSQL V D+G C   EL+RF++ALE
Sbjct: 61  AVFSPRYCDSYFCLHELALLMETKKRVIPIFCDVKPSQLHVKDNGLCPGEELQRFTYALE 120

Query: 140 EAKFTVGLTFDSLKGNWSDIVTSASDIIIRSLMEID 175
           EAK+TVGLTFD+L+GNWS  +T+A D ++ +L+E+D
Sbjct: 121 EAKYTVGLTFDTLEGNWSQFLTTAMDAVVHNLIEVD 156

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519558|ref|XP_003528439.1| PREDICTED: TMV resistance protein N-like [Glycine max]

 Score =  243 bits (619), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 112/173 (64%), Positives = 142/173 (82%)

Query: 14  RNQAIKPCDVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIR 73
           R  A   CDVFINHRGIDTKR +A LLYD L R+ +R FLD+ NMKPGD+LFD+I++AI 
Sbjct: 10  RKIARPACDVFINHRGIDTKRNIAELLYDRLRRMKVRSFLDSMNMKPGDRLFDHIDKAIL 69

Query: 74  NCKVGVAVFSPTYCQSYFCLHELALMMETKKKVIPIFCDIKPSQLLVIDDGKCSANELRR 133
            CKVGVAVFSP YC SYFCLHELAL+ME+KK+V+PIF D+KPSQL+V D+G C + EL+R
Sbjct: 70  GCKVGVAVFSPRYCDSYFCLHELALLMESKKRVVPIFYDVKPSQLVVKDNGTCPSKELQR 129

Query: 134 FSWALEEAKFTVGLTFDSLKGNWSDIVTSASDIIIRSLMEIDYKEQRHWRRQN 186
           FS ALEEAK+TVGLTFDSLKG+WS+++  ASD +I +L+E++ + +R  R+ N
Sbjct: 130 FSLALEEAKYTVGLTFDSLKGDWSELLRDASDAVIMNLLEVEEEHRRMKRKLN 182

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496641|ref|XP_002271939.2| PREDICTED: TMV resistance protein N [Vitis vinifera] gi|297744868|emb|CBI38327.3| unnamed protein product [Vitis vinifera]

 Score =  241 bits (616), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 114/186 (61%), Positives = 143/186 (76%), Gaps = 5/186 (2%)

Query: 2   NLQRQVFRQNRLRNQAIKPCDVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPG 61
           NL   + R  R       PCDVFINHRGIDTK+ VA L+YD L R+ LRPFLDNK+MKPG
Sbjct: 8   NLCHHLVRHQRRVPTPQNPCDVFINHRGIDTKKNVAGLIYDDLIRMKLRPFLDNKSMKPG 67

Query: 62  DKLFDNINRAIRNCKVGVAVFSPTYCQSYFCLHELALMMETKKKVIPIFCDIKPSQLLVI 121
           DKLFD I+ AI NCK+G+AVFSP YC+SYFCLHEL+L+ME+KK+VIPIF D+KPS+L V 
Sbjct: 68  DKLFDKIDSAIMNCKLGIAVFSPRYCESYFCLHELSLIMESKKRVIPIFVDVKPSELRVT 127

Query: 122 DDGKCSANELRRFSWALEEAKFTVGLTFDSLKGNWSDIVTSASDIIIRSLMEIDYKEQRH 181
            +G C   E+ RFSWAL+EAK+TVGLTFD++ G+WSD V +ASD +I++L+E+    +R 
Sbjct: 128 -NGVCPPREVERFSWALQEAKYTVGLTFDTVHGDWSDFVKNASDAVIKNLLEL----ERE 182

Query: 182 WRRQNS 187
           W  QN 
Sbjct: 183 WPVQNG 188

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544014|ref|XP_003540451.1| PREDICTED: uncharacterized protein LOC100785101 [Glycine max]

 Score =  241 bits (614), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 117/192 (60%), Positives = 146/192 (76%), Gaps = 5/192 (2%)

Query: 3   LQRQVFRQNR----LRNQAIKPCDVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNM 58
            QR+ F Q R    +  + ++PCDVF+NHR +DTK+ VATLLYDHL R    PFLDNKNM
Sbjct: 10  FQRRFFSQQRRTQMVARRVLEPCDVFLNHRSMDTKKTVATLLYDHLKRHGFNPFLDNKNM 69

Query: 59  KPGDKLFDNINRAIRNCKVGVAVFSPTYCQSYFCLHELALMMETKKKVIPIFCDIKPSQL 118
           KPGDKLF+ INRA+  CK+GVAV SP Y +SYFCLHELAL++   KKVIPIFCD+KPSQL
Sbjct: 70  KPGDKLFEKINRAVMECKIGVAVLSPRYTESYFCLHELALLLGCNKKVIPIFCDVKPSQL 129

Query: 119 LVIDDGKCSANELRRFSWALEEAKFTVGLTFDSLKGNWSDIVTSASDIIIRSLMEIDYKE 178
            V+++ K S +ELRRF  ALEE KFTVGLTF+S KGN+S+IV S+SDIII S++E+   E
Sbjct: 130 RVVNNPKWSEDELRRFRRALEEVKFTVGLTFNSSKGNFSEIVNSSSDIIIGSMIELK-NE 188

Query: 179 QRHWRRQNSTPM 190
           +R  R+    P+
Sbjct: 189 ERMQRKNLQIPL 200

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727789|ref|NP_001236149.1| uncharacterized protein LOC100526930 [Glycine max] gi|255631173|gb|ACU15952.1| unknown [Glycine max]

 Score =  233 bits (595), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 115/169 (68%), Positives = 133/169 (78%), Gaps = 1/169 (0%)

Query: 13  LRNQAI-KPCDVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRA 71
           +RN  I  PCDVFINHR +DTK  VA  LYDHL R    PFLDNK MKPGDKLFD INRA
Sbjct: 26  VRNGIILDPCDVFINHRSLDTKTTVAAPLYDHLRRHGFHPFLDNKTMKPGDKLFDKINRA 85

Query: 72  IRNCKVGVAVFSPTYCQSYFCLHELALMMETKKKVIPIFCDIKPSQLLVIDDGKCSANEL 131
           I  CK+G+AV SP YC SYFCLHELAL+ME KKKVIPIF DIKPSQL VI++ K +  + 
Sbjct: 86  ILECKIGLAVMSPRYCDSYFCLHELALLMECKKKVIPIFVDIKPSQLRVINNKKWTLEDQ 145

Query: 132 RRFSWALEEAKFTVGLTFDSLKGNWSDIVTSASDIIIRSLMEIDYKEQR 180
           RRF  A+EEAK+TVGLTF+SL+GN+S IVTSASDIII SL+E + +E +
Sbjct: 146 RRFKLAIEEAKYTVGLTFNSLQGNFSGIVTSASDIIIESLIEFEDEEAQ 194

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	192
TAIR|locus:2011541	199	AT1G52900 [Arabidopsis thalian	0.822	0.793	0.679	1.4e-55
TAIR|locus:1006230674	188	AT1G61105 [Arabidopsis thalian	0.812	0.829	0.602	2.2e-50
TAIR|locus:2032723	275	AT1G72920 [Arabidopsis thalian	0.505	0.352	0.376	4.1e-13
TAIR|locus:2823998	380	AT1G17615 [Arabidopsis thalian	0.505	0.255	0.346	4.2e-13
TAIR|locus:2032597	379	AT1G72950 [Arabidopsis thalian	0.489	0.248	0.387	6.9e-13
TAIR|locus:2032602	1163	AT1G72860 [Arabidopsis thalian	0.812	0.134	0.284	1.9e-12
TAIR|locus:2032718	380	AT1G72910 [Arabidopsis thalian	0.505	0.255	0.356	1.9e-12
TAIR|locus:2156579	1190	AT5G48770 [Arabidopsis thalian	0.515	0.083	0.380	2.9e-12
TAIR|locus:2032753	371	AT1G72940 [Arabidopsis thalian	0.505	0.261	0.366	3e-12
TAIR|locus:2032733	176	TIR "toll/interleukin-1 recept	0.505	0.551	0.336	2.2e-11

TAIR|locus:2011541 AT1G52900 [Arabidopsis thaliana (taxid:3702)]

 Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
 Identities = 108/159 (67%), Positives = 132/159 (83%)

Query:    22 DVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAV 81
             DVFINHRG DTKR +ATLLYD+L   NLRPFLD+KNMKPGDKLFD+IN AI   KV V V
Sbjct:    39 DVFINHRGSDTKRNIATLLYDNLKSRNLRPFLDSKNMKPGDKLFDHINNAILTSKVAVTV 98

Query:    82 FSPTYCQSYFCLHELALMMETKKKVIPIFCDIKPSQL-LVIDDGKCSANELRRFSWALEE 140
             FSP YC SYFCLHELAL+ME++K+VIPIFCDIKPSQL ++I+   CS +E++RF WAL+E
Sbjct:    99 FSPNYCDSYFCLHELALIMESRKRVIPIFCDIKPSQLDVMIERVTCSDDEIQRFRWALQE 158

Query:   141 AKFTVGLTFDSLKGNWSDIVTSASDIIIRSLMEIDYKEQ 179
             AK  VGLTFDS KGN S++VT ASD+I+  L+E++ K++
Sbjct:   159 AKDIVGLTFDSYKGNLSEVVTVASDVIVERLVELEAKDE 197

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

TAIR|locus:1006230674 AT1G61105 [Arabidopsis thaliana (taxid:3702)]

 Score = 524 (189.5 bits), Expect = 2.2e-50, P = 2.2e-50
 Identities = 94/156 (60%), Positives = 124/156 (79%)

Query:    20 PCDVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGV 79
             PCD+FINHRGIDTK+ ++ LLYD  +R  L  FLD+K++KPGD+LF  I+ AI+ C VG+
Sbjct:    28 PCDIFINHRGIDTKKTISGLLYDCFTRQRLTAFLDSKSLKPGDRLFVEIDMAIKACGVGI 87

Query:    80 AVFSPTYCQSYFCLHELALMMETKKKVIPIFCDIKPSQLLVIDDGKCSANELRRFSWALE 139
             AVFSP YC SYFCLHELAL+++ KK+VIPIFCD+KPS+L V DD    A E+RRF  ALE
Sbjct:    88 AVFSPRYCDSYFCLHELALLVKNKKRVIPIFCDVKPSELCVKDDKTRPAAEIRRFQLALE 147

Query:   140 EAKFTVGLTFDSLKGNWSDIVTSASDIIIRSLMEID 175
             EAK+TVGLTFD+  G+WS+ +  ASD + ++L+E++
Sbjct:   148 EAKYTVGLTFDTSNGDWSEFLAMASDAVTKNLLEVE 183

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0007165 "signal transduction" evidence=IEA

TAIR|locus:2032723 AT1G72920 [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 4.1e-13, P = 4.1e-13
 Identities = 38/101 (37%), Positives = 56/101 (55%)

Query:    22 DVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAV 81
             DVF++ RG+DT+R   + LY  L R  +R F D+K ++ G ++   + RAI   K  V V
Sbjct:    10 DVFLSFRGLDTRRNFISFLYKELVRRKIRTFKDDKELENGRRISPELKRAIEESKFAVVV 69

Query:    82 FSPTYCQSYFCLHELALMMETKKK----VIPIFCDIKPSQL 118
              S  Y  S +CL EL  +M+ + K    V+PIF  + P  L
Sbjct:    70 VSVNYAASPWCLDELVKIMDFENKGSITVMPIFYGVDPCHL 110

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP

TAIR|locus:2823998 AT1G17615 [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 4.2e-13, P = 4.2e-13
 Identities = 35/101 (34%), Positives = 61/101 (60%)

Query:    22 DVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAV 81
             DVF++ RG DT+R   + LY  L  + +R F D+  ++ G ++  ++  AI N K+ V +
Sbjct:    16 DVFLSFRGKDTRRTFISFLYKELIEMGIRTFKDDVELQSGRRIASDLLAAIENSKIAVVI 75

Query:    82 FSPTYCQSYFCLHELALMMETKKK----VIPIFCDIKPSQL 118
              S  Y  S +CL EL ++M+ +KK    V+PIF +++P+ +
Sbjct:    76 ISKNYSASPWCLQELVMIMDVEKKGSIIVMPIFYNVEPAHV 116

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2032597 AT1G72950 [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 6.9e-13, P = 6.9e-13
 Identities = 38/98 (38%), Positives = 56/98 (57%)

Query:    22 DVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAV 81
             DVF++ RG+DT+R   + LY  L R N+R F D+K +K G ++   + RAI   +  V V
Sbjct:    12 DVFLSFRGLDTRRSFISFLYKELIRRNIRTFKDDKELKNGRRITPELIRAIEGSRFAVVV 71

Query:    82 FSPTYCQSYFCLHELALMMETKK----KVIPIFCDIKP 115
              S  Y  S +CL EL  +M+ +     KV+PIF  + P
Sbjct:    72 VSVNYAASRWCLEELVKIMDFENMGSLKVMPIFYGVDP 109

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2032602 AT1G72860 [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
 Identities = 49/172 (28%), Positives = 85/172 (49%)

Query:    22 DVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAV 81
             DVF++ RG DT++ + + L+  L    +  F D+K ++ GD + + I+RAI+N    + +
Sbjct:    13 DVFLSFRGEDTRKNIVSHLHKQLVDKGVVTFKDDKKLELGDSISEEISRAIQNSTYALVI 72

Query:    82 FSPTYCQSYFCLHELALMME----TKKKVIPIFCDIKPSQL------LVID---DGKCSA 128
              S  Y  S +CL EL ++M+     K KV+PIF  + PS +         D   D K   
Sbjct:    73 LSENYASSSWCLDELRMVMDLHLKNKIKVVPIFYGVDPSHVRHQTGSFTFDKYQDSKMP- 131

Query:   129 NELRRFSWALEEAKFTVGLTFDSLKGNWSDIVTSASDIIIRSLM--EIDYKE 178
             N++  +  AL +     G  F++ +   S I     DI  + L+   +D+ +
Sbjct:   132 NKVTTWREALTQIASLAGKDFETCEDEASMIEEIVKDISKKLLIMQPVDFSD 183

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2032718 AT1G72910 [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 36/101 (35%), Positives = 59/101 (58%)

Query:    22 DVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAV 81
             DVF++ RG DT++   + LY  L R ++R F D+K ++ G ++   + R I   +  V V
Sbjct:    10 DVFLSFRGHDTRQNFISFLYKELVRRSIRTFKDDKELENGQRISSELKRTIEVSRFAVVV 69

Query:    82 FSPTYCQSYFCLHELALMMETKKK----VIPIFCDIKPSQL 118
              S TY  S +CL EL  +M+ +KK    V+PIF  ++P+ +
Sbjct:    70 VSETYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHV 110

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2156579 AT5G48770 [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 2.9e-12, P = 2.9e-12
 Identities = 40/105 (38%), Positives = 61/105 (58%)

Query:    20 PC--DVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKV 77
             PC  DVF++ RG DT+R + + LY  L    +  F D+++++ GD +  ++ RAI   K 
Sbjct:    11 PCNYDVFLSFRGEDTRRTIVSHLYAALGAKGIITFKDDQDLEVGDHISSHLRRAIEGSKF 70

Query:    78 GVAVFSPTYCQSYFCLHELALMMET----KKKVIPIFCDIKPSQL 118
              V V S  Y  S +CL EL L+ME     K KV+P+F ++ PS +
Sbjct:    71 AVVVLSERYTTSRWCLMELQLIMELYNLGKLKVLPLFYEVDPSDV 115

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2032753 AT1G72940 [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 3.0e-12, P = 3.0e-12
 Identities = 37/101 (36%), Positives = 55/101 (54%)

Query:    22 DVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAV 81
             DVF++ RG+DT+R   + LY    R  +R F D+K ++ G ++   + RAI   K  V V
Sbjct:    10 DVFLSFRGVDTRRNFISFLYKEFVRRKIRTFKDDKELENGRRISPELKRAIEESKFAVVV 69

Query:    82 FSPTYCQSYFCLHELALMMETKKK----VIPIFCDIKPSQL 118
              S  Y  S +CL EL  +M+ + K    V+PIF  + P  L
Sbjct:    70 VSVNYAASPWCLDELVKIMDFENKGSITVMPIFYGVDPCHL 110

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006914 "autophagy" evidence=RCA

TAIR|locus:2032733 TIR "toll/interleukin-1 receptor-like" [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 34/101 (33%), Positives = 55/101 (54%)

Query:    22 DVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAV 81
             DVF++ RG DT+    + LY  L R ++R F D+K ++ G +    +   I   +  V V
Sbjct:    10 DVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVV 69

Query:    82 FSPTYCQSYFCLHELALMMETKKK----VIPIFCDIKPSQL 118
              S  Y  S +CL EL  +M+ +KK    V+PIF  ++P+ +
Sbjct:    70 VSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHV 110

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	192
PLN03194	187	PLN03194, PLN03194, putative disease resistance pr	1e-114
pfam13676	102	pfam13676, TIR_2, TIR domain	5e-19
smart00255	140	smart00255, TIR, Toll - interleukin 1 - resistance	3e-18
pfam01582	135	pfam01582, TIR, TIR domain	5e-18
PLN03210	1153	PLN03210, PLN03210, Resistant to P	9e-08

>gnl|CDD|215626 PLN03194, PLN03194, putative disease resistance protein; Provisional

 Score =  322 bits (828), Expect = e-114
 Identities = 129/175 (73%), Positives = 152/175 (86%)

Query: 1   MNLQRQVFRQNRLRNQAIKPCDVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKP 60
             L  ++F      + + KPCDVFINHRGIDTKR +ATLLYDHLSRLNLRPFLDNKNMKP
Sbjct: 7   AQLNNRLFLHYPSSSSSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKP 66

Query: 61  GDKLFDNINRAIRNCKVGVAVFSPTYCQSYFCLHELALMMETKKKVIPIFCDIKPSQLLV 120
           GDKLFD IN AIRNCKVGVAVFSP YC+SYFCLHELAL+ME+KK+VIPIFCD+KPSQL V
Sbjct: 67  GDKLFDKINSAIRNCKVGVAVFSPRYCESYFCLHELALIMESKKRVIPIFCDVKPSQLRV 126

Query: 121 IDDGKCSANELRRFSWALEEAKFTVGLTFDSLKGNWSDIVTSASDIIIRSLMEID 175
           +D+G C   E+RRF+WALEEAK+TVGLTFDSLKGNWS++VT ASD +I++L+E++
Sbjct: 127 VDNGTCPDEEIRRFNWALEEAKYTVGLTFDSLKGNWSEVVTMASDAVIKNLIELE 181

Length = 187

>gnl|CDD|222311 pfam13676, TIR_2, TIR domain

 Score = 77.6 bits (192), Expect = 5e-19
 Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 8/105 (7%)

Query: 23  VFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVF 82
           VFI++   D  R+ A  L D L    +R +LD  ++ PG+   D I  A+R+  V + + 
Sbjct: 1   VFISYASAD--REWAEWLADALEAAGIRVWLD-WDIPPGEDWRDEIEEALRSADVVLVLL 57

Query: 83  SPTYCQSYFCLHELALMMETKKKVIPIF---CDIKP--SQLLVID 122
           SP Y  S +C  E    +E  K++IP+    C++     QL  ID
Sbjct: 58  SPAYLASPWCRAEWGAALERGKRLIPVRLEDCELPGLLGQLQYID 102

This is a family of bacterial Toll-like receptors. Length = 102

>gnl|CDD|214587 smart00255, TIR, Toll - interleukin 1 - resistance

 Score = 77.0 bits (190), Expect = 3e-18
 Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 8/109 (7%)

Query: 21  CDVFINHRG-IDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGV 79
            DVFI++ G  D + +  + L + L    L  F+D+   +PG    + I+ AI   ++ +
Sbjct: 2   YDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDF--EPGGGDLEEIDEAIEKSRIAI 59

Query: 80  AVFSPTYCQSYFCLHELALMMET-----KKKVIPIFCDIKPSQLLVIDD 123
            V SP Y +S +CL EL   +E        +VIPIF ++ PS +     
Sbjct: 60  VVLSPNYAESEWCLDELVAALENALEEGGLRVIPIFYEVIPSDVRKQPG 108

Length = 140

>gnl|CDD|216585 pfam01582, TIR, TIR domain

 Score = 75.8 bits (187), Expect = 5e-18
 Identities = 27/103 (26%), Positives = 52/103 (50%), Gaps = 6/103 (5%)

Query: 23  VFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVF 82
           VF++  G D +    + L   L    ++  +D+++  PG+ + +N+  AI   +  + +F
Sbjct: 1   VFVSFSGKDDRDTFVSHLLKELEEKGIKLCIDDRDELPGESILENLFEAIEKSRRAIVIF 60

Query: 83  SPTYCQSYFCLHELALMME------TKKKVIPIFCDIKPSQLL 119
           S  Y  S +CL EL  +++       KK ++PIF  + PS + 
Sbjct: 61  SSNYASSEWCLDELVEIVKCALEGGGKKVILPIFYKVDPSDVR 103

The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades. Length = 135

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 51.0 bits (122), Expect = 9e-08
 Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 5/101 (4%)

Query: 22  DVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAV 81
           DVF +  G D +    +     L R  +  F DN+ ++    L   + +AIR+ ++ V V
Sbjct: 14  DVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNE-IERSQSLDPELKQAIRDSRIAVVV 72

Query: 82  FSPTYCQSYFCLHELALMMETKKK----VIPIFCDIKPSQL 118
           FS  Y  S +CL+EL  ++  K++    VIP+F  + PS +
Sbjct: 73  FSKNYASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHV 113

syringae 6; Provisional. Length = 1153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	192
PLN03194	187	putative disease resistance protein; Provisional	100.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
PF01582	141	TIR: TIR domain; InterPro: IPR000157 In Drosophila	99.88
smart00255	140	TIR Toll - interleukin 1 - resistance.	99.87
PF13676	102	TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_	99.79
KOG3678	832	consensus SARM protein (with sterile alpha and arm	99.51
PF08937	130	DUF1863: MTH538 TIR-like domain (DUF1863); InterPr	98.96
PF08357	150	SEFIR: SEFIR domain; InterPro: IPR013568 This doma	98.0
PF10137	125	TIR-like: Predicted nucleotide-binding protein con	97.13
PF05014	113	Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransfer	94.6
PF13271	83	DUF4062: Domain of unknown function (DUF4062)	93.92
COG4916	329	Uncharacterized protein containing a TIR (Toll-Int	93.26
COG4271	233	Predicted nucleotide-binding protein containing TI	90.64
PF14359	92	DUF4406: Domain of unknown function (DUF4406)	88.02
cd00860	91	ThrRS_anticodon ThrRS Threonyl-anticodon binding d	83.74

>PLN03194 putative disease resistance protein; Provisional

Probab=100.00  E-value=3.8e-52  Score=330.56  Aligned_cols=173  Identities=74%  Similarity=1.280  Sum_probs=164.3

Q ss_pred             cchhhhccccCCCCCCCccEEEecccccCchhHHHHHHHHHhcCCCeeEEeCCCCCCCCchHHHHHHHHHhcceeEEEec
Q 044205            4 QRQVFRQNRLRNQAIKPCDVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVFS   83 (192)
Q Consensus         4 ~~~~~~~~~~~~~~~~~ydVFISy~~~D~~~~fv~~L~~~L~~~gi~vf~D~~~l~~G~~~~~~i~~aI~~S~~~Ivv~S   83 (192)
                      .-|+|-+..++.+++++|||||||+|.|+|.+|+++|+.+|+++||+||+|+.++.+|+.+.+.|.+||++|+++|+|||
T Consensus        10 ~~~~~~~~~~~~~~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS   89 (187)
T PLN03194         10 NNRLFLHYPSSSSSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFS   89 (187)
T ss_pred             hhhhhcccccCCCCCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEEC
Confidence            35778888888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCchhHHHHHHHHHhhcCceeeEEeecCCCcccccccCCCchhHhhhHHHHHHHHHHhcCccccCCCCCHHHHHHHH
Q 044205           84 PTYCQSYFCLHELALMMETKKKVIPIFCDIKPSQLLVIDDGKCSANELRRFSWALEEAKFTVGLTFDSLKGNWSDIVTSA  163 (192)
Q Consensus        84 ~~y~~S~wc~~EL~~~~~~~~~ViPVf~~v~p~~vr~~~~g~~~~~~~~~W~~aL~~~~~~~G~~~~~~~~~~~~~v~~I  163 (192)
                      |+|++|.||++||++|+++++.||||||+|+|++||+|++|.+..+++++|+.||+++++++|++++..+++|+++|++|
T Consensus        90 ~~Ya~S~WCLdEL~~I~e~~~~ViPIFY~VdPsdVr~q~~~~~~~e~v~~Wr~AL~~va~l~G~~~~~~~~~e~e~i~~i  169 (187)
T PLN03194         90 PRYCESYFCLHELALIMESKKRVIPIFCDVKPSQLRVVDNGTCPDEEIRRFNWALEEAKYTVGLTFDSLKGNWSEVVTMA  169 (187)
T ss_pred             CCcccchhHHHHHHHHHHcCCEEEEEEecCCHHHhhccccCCCCHHHHHHHHHHHHHHhccccccCCCCCCCHHHHHHHH
Confidence            99999999999999999999999999999999999998668888999999999999999999999876578999999999


Q ss_pred             HHHHHHHhhhcCC
Q 044205          164 SDIIIRSLMEIDY  176 (192)
Q Consensus       164 v~~v~~~l~~~~~  176 (192)
                      |++|.++|..+..
T Consensus       170 v~~v~k~l~~~~~  182 (187)
T PLN03194        170 SDAVIKNLIELEE  182 (187)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999977654

>PLN03210 Resistant to P

Probab=100.00  E-value=1.5e-42  Score=340.38  Aligned_cols=178  Identities=22%  Similarity=0.309  Sum_probs=162.8

Q ss_pred             cccCCCCCCCccEEEecccccCchhHHHHHHHHHhcCCCeeEEeCCCCCCCCchHHHHHHHHHhcceeEEEecCCCCCch
Q 044205           11 NRLRNQAIKPCDVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVFSPTYCQSY   90 (192)
Q Consensus        11 ~~~~~~~~~~ydVFISy~~~D~~~~fv~~L~~~L~~~gi~vf~D~~~l~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~~S~   90 (192)
                      ++|+.+..++|||||||||+|+|++|++||+.+|.++||++|.|+ ++.+|+.+.+++.+||++|+++|||||++|++|.
T Consensus         3 ~~~~~~~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~-~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~s~   81 (1153)
T PLN03210          3 SSSSSSRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDN-EIERSQSLDPELKQAIRDSRIAVVVFSKNYASSS   81 (1153)
T ss_pred             CCCCCCCCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccC-CccCCCcccHHHHHHHHhCeEEEEEecCCcccch
Confidence            345566789999999999999999999999999999999999987 5999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhhc----CceeeEEeecCCCcccccccCCC-----------chhHhhhHHHHHHHHHHhcCccccCCCCC
Q 044205           91 FCLHELALMMETK----KKVIPIFCDIKPSQLLVIDDGKC-----------SANELRRFSWALEEAKFTVGLTFDSLKGN  155 (192)
Q Consensus        91 wc~~EL~~~~~~~----~~ViPVf~~v~p~~vr~~~~g~~-----------~~~~~~~W~~aL~~~~~~~G~~~~~~~~~  155 (192)
                      ||++||++|++|+    +.|+||||+|+|++||+|+ |.|           .++++++|+.||++|++++||++.. +++
T Consensus        82 wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~-g~f~~~f~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~-~~~  159 (1153)
T PLN03210         82 WCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQT-GDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGYHSQN-WPN  159 (1153)
T ss_pred             HHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhcc-chHHHHHHHHhcccchhHHHHHHHHHHHHhCcCceecCC-CCC
Confidence            9999999999985    4899999999999999998 876           3578999999999999999999864 688


Q ss_pred             HHHHHHHHHHHHHHHhhhcC----CcchhhhhhhcccCcC
Q 044205          156 WSDIVTSASDIIIRSLMEID----YKEQRHWRRQNSTPML  191 (192)
Q Consensus       156 ~~~~v~~Iv~~v~~~l~~~~----~~~vg~~~rl~~~~~~  191 (192)
                      |+++|++||++|.++|...+    .+.||++.++++|+.|
T Consensus       160 E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~l  199 (1153)
T PLN03210        160 EAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSL  199 (1153)
T ss_pred             HHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHH
Confidence            99999999999999996554    3789999999988654

syringae 6; Provisional

>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo

Probab=99.88  E-value=1.1e-23  Score=161.42  Aligned_cols=116  Identities=27%  Similarity=0.444  Sum_probs=98.7

Q ss_pred             EEEecccccCchhHHHHHHHHHhcC--CCeeEEeCCCCCCCCchHHHHHHHHHhcceeEEEecCCCCCchhHHHHHHHHH
Q 044205           23 VFINHRGIDTKRKVATLLYDHLSRL--NLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVFSPTYCQSYFCLHELALMM  100 (192)
Q Consensus        23 VFISy~~~D~~~~fv~~L~~~L~~~--gi~vf~D~~~l~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~EL~~~~  100 (192)
                      |||||++.+.+..|+++|..+|++.  |+++|++++|+.+|..+.+++.++|++|+++|+|+|++|+.|.||+.||..|+
T Consensus         1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~   80 (141)
T PF01582_consen    1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL   80 (141)
T ss_dssp             EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred             cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence            8999999433678999999999999  99999999999999999999999999999999999999999999999999998


Q ss_pred             hh----c--CceeeEEeecCCCccc-ccccCCC-----------c----hhHhhhHHHHHH
Q 044205          101 ET----K--KKVIPIFCDIKPSQLL-VIDDGKC-----------S----ANELRRFSWALE  139 (192)
Q Consensus       101 ~~----~--~~ViPVf~~v~p~~vr-~~~~g~~-----------~----~~~~~~W~~aL~  139 (192)
                      ++    +  +.|+|||+++.+++++ .+. +++           .    .+....|+.++.
T Consensus        81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~-~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~  140 (141)
T PF01582_consen   81 ERLLEEGRDKLILPVFYDVSPSDVRPDQS-LRFLLRFLTYLRWPDDDSREDRSWFWKKLRY  140 (141)
T ss_dssp             HHHHCSTCTTEEEEESSSS-CHHCHTHHH-HHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred             hhccccccccceeeEeccCChhhcChhhh-HHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence            74    3  5899999999999999 454 321           1    346778888765

In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....

>smart00255 TIR Toll - interleukin 1 - resistance

Probab=99.87  E-value=4.4e-22  Score=151.06  Aligned_cols=101  Identities=32%  Similarity=0.573  Sum_probs=86.6

Q ss_pred             CccEEEeccc-ccCchhHHHHHHHHHhcCCCeeEEeCCCCCCCCchHHHHHHHHHhcceeEEEecCCCCCchhHHHHHHH
Q 044205           20 PCDVFINHRG-IDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVFSPTYCQSYFCLHELAL   98 (192)
Q Consensus        20 ~ydVFISy~~-~D~~~~fv~~L~~~L~~~gi~vf~D~~~l~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~EL~~   98 (192)
                      .|||||||++ ++....|+.+|...|...|+.+|.|+...  |.....+|.++|++|+++|+|+||+|..|+||..|+..
T Consensus         1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~--~~~~~~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~   78 (140)
T smart00255        1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEP--GGGDLEEIDEAIEKSRIAIVVLSPNYAESEWCLDELVA   78 (140)
T ss_pred             CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCccc--ccchHHHHHHHHHHCcEEEEEECcccccChhHHHHHHH
Confidence            5999999998 45567899999999999999999997643  33333399999999999999999999999999999999


Q ss_pred             HHhh-----cCceeeEEeecCCCcccccc
Q 044205           99 MMET-----KKKVIPIFCDIKPSQLLVID  122 (192)
Q Consensus        99 ~~~~-----~~~ViPVf~~v~p~~vr~~~  122 (192)
                      +.++     +++||||+++..|..+..+.
T Consensus        79 a~~~~~~~~~~~iIPI~~~~~~~~~~~~~  107 (140)
T smart00255       79 ALENALEEGGLRVIPIFYEVIPSDVRKQP  107 (140)
T ss_pred             HHHHHHHcCCCeEEEEEEecChHHHHhcc
Confidence            9873     46999999998887777665

>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A

Probab=99.79  E-value=2e-20  Score=135.34  Aligned_cols=87  Identities=32%  Similarity=0.553  Sum_probs=78.1

Q ss_pred             EEEecccccCchhHHHHHHHHHhcCCCeeEEeCCCCCCCCchHHHHHHHHHhcceeEEEecCCCCCchhHHHHHHHHHhh
Q 044205           23 VFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVFSPTYCQSYFCLHELALMMET  102 (192)
Q Consensus        23 VFISy~~~D~~~~fv~~L~~~L~~~gi~vf~D~~~l~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~EL~~~~~~  102 (192)
                      |||||+++|.  .+|..|...|++.|+++|+|. ++.+|+.+.+.|.++|++|+++|+++||+|..|+||..|+..+.+.
T Consensus         1 VFIS~~~~D~--~~a~~l~~~L~~~g~~v~~d~-~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~~   77 (102)
T PF13676_consen    1 VFISYSSEDR--EFAERLAERLESAGIRVFLDR-DIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWKR   77 (102)
T ss_dssp             EEEEEEGGGC--CCHHHHHHHHHHTT--EE-GG-EE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHCT
T ss_pred             eEEEecCCcH--HHHHHHHHHHhhcCCEEEEEE-eCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHHC
Confidence            8999999994  589999999999999999997 8999999999999999999999999999999999999999999988


Q ss_pred             cCceeeEEee
Q 044205          103 KKKVIPIFCD  112 (192)
Q Consensus       103 ~~~ViPVf~~  112 (192)
                      +++||||.++
T Consensus        78 ~~~iipv~~~   87 (102)
T PF13676_consen   78 GKPIIPVRLD   87 (102)
T ss_dssp             SESEEEEECS
T ss_pred             CCEEEEEEEC
Confidence            8899999975

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=99.51  E-value=1.2e-13  Score=123.22  Aligned_cols=146  Identities=19%  Similarity=0.240  Sum_probs=115.7

Q ss_pred             CCCCCCccEEEecccccCchhHHHHHHHHHhcCCCeeEEeCCCCCCCCchHHHHHHHHHhcceeEEEecCCCCC------
Q 044205           15 NQAIKPCDVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVFSPTYCQ------   88 (192)
Q Consensus        15 ~~~~~~ydVFISy~~~D~~~~fv~~L~~~L~~~gi~vf~D~~~l~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~~------   88 (192)
                      .+..++.||||||+... ...+++.|+-.|+-+|++||+|.+.+..|. +.+.+.+.|+.++.+|+|+||+...      
T Consensus       607 a~~skq~DVFISYRRst-GnQLASLiKV~LQL~GyrVFIDVdKL~AGK-FdssLlkni~aAkhFiLVLtP~sLDr~lnD~  684 (832)
T KOG3678|consen  607 AMLSKQIDVFISYRRST-GNQLASLIKVLLQLRGYRVFIDVDKLYAGK-FDSSLLKNIQAAKHFILVLTPNSLDRLLNDD  684 (832)
T ss_pred             ccccCCcceEEEeeccc-cHHHHHHHHHHHHhcCceEEEehhhhhccc-ccHHHHHHHHhhheeEEEeCcchHHHHhccc
Confidence            34678999999999765 467899999999999999999999998887 5678899999999999999999763      


Q ss_pred             --chhHHHHHHHHHhhcCceeeEEeecCCCcccccccCCCchhHhhhHHHHHHHHHHhcCccccCCCCCHHHHHHHHHHH
Q 044205           89 --SYFCLHELALMMETKKKVIPIFCDIKPSQLLVIDDGKCSANELRRFSWALEEAKFTVGLTFDSLKGNWSDIVTSASDI  166 (192)
Q Consensus        89 --S~wc~~EL~~~~~~~~~ViPVf~~v~p~~vr~~~~g~~~~~~~~~W~~aL~~~~~~~G~~~~~~~~~~~~~v~~Iv~~  166 (192)
                        -.|+.+||..+++|++.|||||-..-  +.         +++-..-.+-+.-+..+.|..+..  .+...++++||+-
T Consensus       685 nCeDWVHKEl~~Afe~~KNIiPI~D~aF--E~---------Pt~ed~iPnDirmi~kyNGvKWvH--dYQdA~maKvvRF  751 (832)
T KOG3678|consen  685 NCEDWVHKELKCAFEHQKNIIPIFDTAF--EF---------PTKEDQIPNDIRMITKYNGVKWVH--DYQDACMAKVVRF  751 (832)
T ss_pred             cHHHHHHHHHHHHHHhcCCeeeeecccc--cC---------CCchhcCcHHHHHHHhccCeeeeh--hhHHHHHHHHHHH
Confidence              46999999999999999999995410  00         000111234455677788877653  5677899999999


Q ss_pred             HHHHhhhcC
Q 044205          167 IIRSLMEID  175 (192)
Q Consensus       167 v~~~l~~~~  175 (192)
                      +...|++..
T Consensus       752 itGe~nRtt  760 (832)
T KOG3678|consen  752 ITGELNRTT  760 (832)
T ss_pred             HhccccCCC
Confidence            999987654

>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments

Probab=98.96  E-value=1.9e-09  Score=81.62  Aligned_cols=91  Identities=18%  Similarity=0.249  Sum_probs=51.6

Q ss_pred             ccEEEecccccCchhHHHHHHHHHhcC-------CCee----------EEeCCCCCCCCchHHHHHHHHHhcceeEEEec
Q 044205           21 CDVFINHRGIDTKRKVATLLYDHLSRL-------NLRP----------FLDNKNMKPGDKLFDNINRAIRNCKVGVAVFS   83 (192)
Q Consensus        21 ydVFISy~~~D~~~~fv~~L~~~L~~~-------gi~v----------f~D~~~l~~G~~~~~~i~~aI~~S~~~Ivv~S   83 (192)
                      |.|||||++.|.. ..+..|...+...       ++..          +-+..+....+.+...|.++|.+|+++||++|
T Consensus         1 ~~vFIS~~~~d~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig   79 (130)
T PF08937_consen    1 YKVFISYSHDDDD-WYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG   79 (130)
T ss_dssp             ----------THH--HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred             CCccccccccCcH-HHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence            5799999998853 3577777777662       2221          11222233445789999999999999999999


Q ss_pred             CCCCCchhHHHHHHHHHhhcCceeeEEee
Q 044205           84 PTYCQSYFCLHELALMMETKKKVIPIFCD  112 (192)
Q Consensus        84 ~~y~~S~wc~~EL~~~~~~~~~ViPVf~~  112 (192)
                      ++...|.|+..|+..+++.+++||.|.+.
T Consensus        80 ~~T~~s~wV~~EI~~A~~~~~~Ii~V~~~  108 (130)
T PF08937_consen   80 PNTAKSKWVNWEIEYALKKGKPIIGVYLP  108 (130)
T ss_dssp             TT----HHHHHHHHHHTTT---EEEEETT
T ss_pred             CCcccCcHHHHHHHHHHHCCCCEEEEECC
Confidence            99999999999999999999999999874

The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.

>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e

Probab=98.00  E-value=1.5e-05  Score=61.29  Aligned_cols=65  Identities=22%  Similarity=0.254  Sum_probs=54.3

Q ss_pred             cEEEecccccC-chhHHHHHHHHHhcC-CCeeEEeCCCCCC--CCchHHHHHHHHHhcceeEEEecCCC
Q 044205           22 DVFINHRGIDT-KRKVATLLYDHLSRL-NLRPFLDNKNMKP--GDKLFDNINRAIRNCKVGVAVFSPTY   86 (192)
Q Consensus        22 dVFISy~~~D~-~~~fv~~L~~~L~~~-gi~vf~D~~~l~~--G~~~~~~i~~aI~~S~~~Ivv~S~~y   86 (192)
                      .|||||++... ....|..|...|++. |+.|.+|..+...  +..+..-+.+.+++++.+|+|+||.+
T Consensus         2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~   70 (150)
T PF08357_consen    2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY   70 (150)
T ss_pred             eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence            49999997443 235689999999999 9999999988744  66788889999999999999999544

g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].

>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins

Probab=97.13  E-value=0.0024  Score=48.29  Aligned_cols=95  Identities=22%  Similarity=0.388  Sum_probs=70.5

Q ss_pred             cEEEecccccCchhHHHHHHHHHhcCCCeeEEeCCCCCCCCchHHHHHHHHHhcceeEEEecCCCC-------------C
Q 044205           22 DVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVFSPTYC-------------Q   88 (192)
Q Consensus        22 dVFISy~~~D~~~~fv~~L~~~L~~~gi~vf~D~~~l~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~-------------~   88 (192)
                      .|||.|+ .|.  ..+..+...|+..|+.+.+=.+....|..+.+.+.+...+++.+|+++||+=.             .
T Consensus         1 kVFIvhg-~~~--~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpDD~~~~~~~~~~~~~~a   77 (125)
T PF10137_consen    1 KVFIVHG-RDL--AAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPDDIGYSRGEEEDLQPRA   77 (125)
T ss_pred             CEEEEeC-CCH--HHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEcccccccccCCcccccccc
Confidence            3899998 553  56888999999889887765556689999999999999999999999998411             2


Q ss_pred             chhHHHHHHHHHhh-c-CceeeEEee-c-CCCccc
Q 044205           89 SYFCLHELALMMET-K-KKVIPIFCD-I-KPSQLL  119 (192)
Q Consensus        89 S~wc~~EL~~~~~~-~-~~ViPVf~~-v-~p~~vr  119 (192)
                      ...++.|+..++.. + ++++-+.-+ + .|||+.
T Consensus        78 R~NVifE~G~f~g~LGr~rv~~l~~~~v~~PSDl~  112 (125)
T PF10137_consen   78 RQNVIFELGLFIGKLGRERVFILVKGGVELPSDLS  112 (125)
T ss_pred             ccceeehhhHHHhhcCcceEEEEEcCCccCCcccC
Confidence            23567799888763 4 466655532 1 356653

Their exact function has not, as yet, been defined.

>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2

Probab=94.60  E-value=0.35  Score=35.21  Aligned_cols=79  Identities=18%  Similarity=0.196  Sum_probs=57.0

Q ss_pred             hhHHHHHHHHHhcCCCeeEEeCCC-CC---CCC----chHHHHHHHHHhcceeEEEecCCCCCchhHHHHHHHHHhhcCc
Q 044205           34 RKVATLLYDHLSRLNLRPFLDNKN-MK---PGD----KLFDNINRAIRNCKVGVAVFSPTYCQSYFCLHELALMMETKKK  105 (192)
Q Consensus        34 ~~fv~~L~~~L~~~gi~vf~D~~~-l~---~G~----~~~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~EL~~~~~~~~~  105 (192)
                      ..+...+.+.|+..|+.++...+. ..   .+.    .+.+.-.++|++|+++|+++.+.- .+.=+.-|+..|...+++
T Consensus        13 ~~~~~~~~~~L~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~d~~~i~~~D~via~l~~~~-~d~Gt~~ElG~A~algkp   91 (113)
T PF05014_consen   13 KARVERLREALEKNGFEVYSPQDNDENDEEDSQEWAREIFERDLEGIRECDIVIANLDGFR-PDSGTAFELGYAYALGKP   91 (113)
T ss_dssp             HHHHHHHHHHHHTTTTEEEGGCTCSSS--TTSHHCHHHHHHHHHHHHHHSSEEEEEECSSS---HHHHHHHHHHHHTTSE
T ss_pred             HHHHHHHHHHHHhCCCEEEeccccccccccccchHHHHHHHHHHHHHHHCCEEEEECCCCC-CCCcHHHHHHHHHHCCCE
Confidence            467899999999999998875521 11   122    344445679999999999998755 566788899999999986


Q ss_pred             eeeEEeec
Q 044205          106 VIPIFCDI  113 (192)
Q Consensus       106 ViPVf~~v  113 (192)
                      |+-+.-+.
T Consensus        92 v~~~~~d~   99 (113)
T PF05014_consen   92 VILLTEDD   99 (113)
T ss_dssp             EEEEECCC
T ss_pred             EEEEEcCC
Confidence            66554443

4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....

>PF13271 DUF4062: Domain of unknown function (DUF4062)

Probab=93.92  E-value=0.36  Score=33.40  Aligned_cols=67  Identities=16%  Similarity=0.218  Sum_probs=48.0

Q ss_pred             cEEEecccccCchhHHHHHHHHHhcCCCeeEEeCCCCCCCCchHHHHHHHHHhcceeEEEecCCCCCc
Q 044205           22 DVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVFSPTYCQS   89 (192)
Q Consensus        22 dVFISy~~~D~~~~fv~~L~~~L~~~gi~vf~D~~~l~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~~S   89 (192)
                      .||||-.-.|.. .--..|.+.+.+.|..+..-+.--..+....+...+.|++|+++|.++-..|-..
T Consensus         1 rVFiSSt~~Dl~-~eR~~l~~~i~~~~~~~~~~e~~~a~~~~~~~~cl~~v~~cDifI~ilG~rYG~~   67 (83)
T PF13271_consen    1 RVFISSTFRDLK-EERDALIEAIRRLGCEPVGMEFFPASDQSPLEICLKEVDECDIFILILGNRYGSV   67 (83)
T ss_pred             CEEEecChhhHH-HHHHHHHHHHHHCCCeeeeeeeecCCCCCHHHHHHHHHhhCCEEEEeeccccCCC
Confidence            389998777764 3356678888877775543222112355667788899999999999999998754

>COG4916 Uncharacterized protein containing a TIR (Toll-Interleukin 1-resistance) domain [Function unknown]

Probab=93.26  E-value=0.14  Score=43.41  Aligned_cols=100  Identities=19%  Similarity=0.182  Sum_probs=69.9

Q ss_pred             CCCCCccEEEecccccCchhHHHHHHHHHh--cCCCeeEEeCC---CCCCCCchHHHHHHHH-HhcceeEEEecCCCCCc
Q 044205           16 QAIKPCDVFINHRGIDTKRKVATLLYDHLS--RLNLRPFLDNK---NMKPGDKLFDNINRAI-RNCKVGVAVFSPTYCQS   89 (192)
Q Consensus        16 ~~~~~ydVFISy~~~D~~~~fv~~L~~~L~--~~gi~vf~D~~---~l~~G~~~~~~i~~aI-~~S~~~Ivv~S~~y~~S   89 (192)
                      ...+.||+=+||.|+.  ++.|.....+++  ...+..|+|-.   -+.+|+ +.+-+...- ..|++.+|+...+|...
T Consensus       173 ~~~~~~DiG~SFaGEA--R~LVEqV~~E~~~~~~p~~~FYD~~~~~~L~~~s-L~~~L~~~Y~~rC~~~~VF~~~~Y~~K  249 (329)
T COG4916         173 SSEKPVDSGISFAGEA--RNLVEQVQTEHSGLDIPTRRFYDLLVAHPLYPGS-LVSTLDPGYDIRCVVTTVFNTGSYICK  249 (329)
T ss_pred             ccccccceeeEeehhh--hhHHHHHHHhhhcccCCceeeeechhhccccCcc-HHHhcccccCceEEEEEEEeCCceEEe
Confidence            3678999999999987  368999999998  44567788753   233443 333444443 34777888889999999


Q ss_pred             hhHHHHHHHHHhhc--CceeeEEe-ecCCCcc
Q 044205           90 YFCLHELALMMETK--KKVIPIFC-DIKPSQL  118 (192)
Q Consensus        90 ~wc~~EL~~~~~~~--~~ViPVf~-~v~p~~v  118 (192)
                      .||.-|...+-+..  +...||.| .++-+.+
T Consensus       250 ~~c~~E~~~~r~~~~~d~~~rI~~~~~d~~a~  281 (329)
T COG4916         250 STCHIEGLEGRLNPILDTGFRIKYLYADNIAI  281 (329)
T ss_pred             eeeccchhhccccccccccceEEEEecCCccc
Confidence            99999977664432  36777776 3444433

>COG4271 Predicted nucleotide-binding protein containing TIR -like domain [Transcription]

Probab=90.64  E-value=2.8  Score=34.27  Aligned_cols=98  Identities=20%  Similarity=0.323  Sum_probs=66.1

Q ss_pred             CCCCccEEEecccccCchhHHHHHHHHHhcC-CC-eeEEeCCCCCCCCchHHHHHHHHHhcceeEEEecCCCC-----C-
Q 044205           17 AIKPCDVFINHRGIDTKRKVATLLYDHLSRL-NL-RPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVFSPTYC-----Q-   88 (192)
Q Consensus        17 ~~~~ydVFISy~~~D~~~~fv~~L~~~L~~~-gi-~vf~D~~~l~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~-----~-   88 (192)
                      ++.+ .|||-|+++.    .+.....+|.+. -. .+|.|. -...|..+.+.+.+.|.+++.+|++.+|+=.     . 
T Consensus        80 p~~k-kvFvv~ghd~----iArael~allrd~~l~~vi~d~-~~~~g~~ile~lek~i~~v~FAi~latPDDkgy~~~~~  153 (233)
T COG4271          80 PNLK-KVFVVSGHDA----IARAELEALLRDWKLEPVILDG-LFSEGQTILESLEKYIAEVKFAIVLATPDDKGYRAVHS  153 (233)
T ss_pred             CCce-eEEEEeccHH----HHHHHHHHHhhccccceEEecC-cccccHHHHHHHHHHhhhceEEEEEecCcccccccccc
Confidence            3444 8999997533    566766777643 33 456665 4678999999999999999999999999743     1 


Q ss_pred             --chh------HHHHHHHHHhh-c-CceeeEEee---c-CCCcccc
Q 044205           89 --SYF------CLHELALMMET-K-KKVIPIFCD---I-KPSQLLV  120 (192)
Q Consensus        89 --S~w------c~~EL~~~~~~-~-~~ViPVf~~---v-~p~~vr~  120 (192)
                        ..|      +..||...+.. + ++|+-+.-+   + -|||+..
T Consensus       154 ~~k~~praRqNVifELGm~mgrLgRkrv~Il~k~~envelPSDi~G  199 (233)
T COG4271         154 REKAFPRARQNVIFELGMFMGRLGRKRVMILMKRDENVELPSDIAG  199 (233)
T ss_pred             hhhccccccccchhhHhhHHhhcccceEEEEecccccccCccccCc
Confidence              123      56688887753 3 455544332   1 3677643

>PF14359 DUF4406: Domain of unknown function (DUF4406)

Probab=88.02  E-value=4.2  Score=28.87  Aligned_cols=70  Identities=11%  Similarity=0.050  Sum_probs=47.3

Q ss_pred             hhHHHHHHHHHhcCCCeeEEeCCC-CCCCCchHHHHH---HHHHhcceeEEEecCCCCCchhHHHHHHHHHhhcCce
Q 044205           34 RKVATLLYDHLSRLNLRPFLDNKN-MKPGDKLFDNIN---RAIRNCKVGVAVFSPTYCQSYFCLHELALMMETKKKV  106 (192)
Q Consensus        34 ~~fv~~L~~~L~~~gi~vf~D~~~-l~~G~~~~~~i~---~aI~~S~~~Ivv~S~~y~~S~wc~~EL~~~~~~~~~V  106 (192)
                      ..| ....+.|...|+.|.--... ...|.++.+-+.   ..+..|+.  +++=|++-+|.=|.-|...|.+.+..|
T Consensus        16 ~~f-~~~a~~L~~~G~~vvnPa~~~~~~~~~~~~ym~~~l~~L~~cD~--i~~l~gWe~S~GA~~E~~~A~~lGl~V   89 (92)
T PF14359_consen   16 PAF-NAAAKRLRAKGYEVVNPAELGIPEGLSWEEYMRICLAMLSDCDA--IYMLPGWENSRGARLEHELAKKLGLPV   89 (92)
T ss_pred             HHH-HHHHHHHHHCCCEEeCchhhCCCCCCCHHHHHHHHHHHHHhCCE--EEEcCCcccCcchHHHHHHHHHCCCeE
Confidence            344 35778889999766532221 356666555444   34566664  344599999999999999999888643

>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain

Probab=83.74  E-value=7.7  Score=26.18  Aligned_cols=61  Identities=21%  Similarity=0.141  Sum_probs=39.6

Q ss_pred             CccEEEecccccCchhHHHHHHHHHhcCCCeeEEeCCCCCCCCchHHHHHHHHHhcceeEEEecCC
Q 044205           20 PCDVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVFSPT   85 (192)
Q Consensus        20 ~ydVFISy~~~D~~~~fv~~L~~~L~~~gi~vf~D~~~l~~G~~~~~~i~~aI~~S~~~Ivv~S~~   85 (192)
                      .++|+|...+.+. ...+..+...|.+.|++|-+|...    ..+...+..|-..---.++++.++
T Consensus         1 p~~v~ii~~~~~~-~~~a~~~~~~Lr~~g~~v~~d~~~----~~~~~~~~~a~~~g~~~~iiig~~   61 (91)
T cd00860           1 PVQVVVIPVTDEH-LDYAKEVAKKLSDAGIRVEVDLRN----EKLGKKIREAQLQKIPYILVVGDK   61 (91)
T ss_pred             CeEEEEEeeCchH-HHHHHHHHHHHHHCCCEEEEECCC----CCHHHHHHHHHHcCCCEEEEECcc
Confidence            3677777655443 356888999999999999998643    355556666543333344555544

ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	192
3jrn_A	176	Crystal Structure Of Tir Domain From Arabidopsis Th		7e-12
3ozi_A	204	Crystal Structure Of The Tir Domain From The Flax D		5e-10

>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana Length = 176

Iteration: 1
 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 55/101 (54%), Gaps = 4/101 (3%)
Query: 22  DVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAV 81
           DVF++ RG DT+    + LY  L R ++R F D+K ++ G +    +   I   +  V V
Sbjct: 10  DVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVV 69
Query: 82  FSPTYCQSYFCLHELALMMETKKK----VIPIFCDIKPSQL 118
            S  Y  S +CL EL  +M+ +KK    V+PIF  ++P+ +
Sbjct: 70  VSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHV 110

>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease Resistance Protein L6 Length = 204

Iteration: 1
 Score = 60.5 bits (145), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 55/102 (53%), Gaps = 5/102 (4%)
Query: 22  DVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAV 81
           +VF++ RG DT+ +    LY  L R  +  F D+  +  G ++  N+ RAI   K+ V +
Sbjct: 37  EVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPI 96
Query: 82  FSPTYCQSYFCLHELALMMETKKK-----VIPIFCDIKPSQL 118
            S  Y  S +CL ELA ++  +++     ++PIF  + PS +
Sbjct: 97  ISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDV 138

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	192
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	3e-27
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	3e-26
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	6e-26
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	3e-12
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	8e-08
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	7e-07
2js7_A	160	Myeloid differentiation primary response protein M	2e-05
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222} Length = 154

 Score = 99.7 bits (249), Expect = 3e-27
 Identities = 21/101 (20%), Positives = 47/101 (46%), Gaps = 5/101 (4%)

Query: 22  DVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAV 81
           D+FI+H   D K      L   L       + D+ +++PGD L  +I++ + + + G+ V
Sbjct: 22  DIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVV 80

Query: 82  FSPTYCQSYFCLHELALMMETKKK----VIPIFCDIKPSQL 118
            S  + +  +   EL  + + +      ++PI+  +   ++
Sbjct: 81  LSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEV 121

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana} Length = 176

 Score = 97.6 bits (244), Expect = 3e-26
 Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 4/99 (4%)

Query: 22  DVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAV 81
           DVF++ RG DT+    + LY  L R ++R F D+K ++ G +    +   I   +  V V
Sbjct: 10  DVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVV 69

Query: 82  FSPTYCQSYFCLHELALMMETKKK----VIPIFCDIKPS 116
            S  Y  S +CL EL  +M+ +KK    V+PIF  ++P+
Sbjct: 70  VSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPN 108

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum} Length = 204

 Score = 97.7 bits (244), Expect = 6e-26
 Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 5/100 (5%)

Query: 22  DVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAV 81
           +VF++ RG DT+ +    LY  L R  +  F D+  +  G ++  N+ RAI   K+ V +
Sbjct: 37  EVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPI 96

Query: 82  FSPTYCQSYFCLHELALMMETKKK-----VIPIFCDIKPS 116
            S  Y  S +CL ELA ++  +++     ++PIF  + PS
Sbjct: 97  ISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPS 136

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A Length = 146

 Score = 60.5 bits (147), Expect = 3e-12
 Identities = 22/103 (21%), Positives = 42/103 (40%), Gaps = 8/103 (7%)

Query: 22  DVFINHRGIDTKRKVATLLYDHL--SRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGV 79
           DV + H   D     A  L  +L  S  +LR FL  ++  PG  +   + +A+ +    V
Sbjct: 12  DVCVCHSEED--LVAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRV 69

Query: 80  AVFSPTYCQSYFCLHE----LALMMETKKKVIPIFCDIKPSQL 118
            + +P + Q  +C ++    L      +   IP+   +  +  
Sbjct: 70  LLITPGFLQDPWCKYQMLQALTEAPGAEGCTIPLLSGLSRAAY 112

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A Length = 178

 Score = 49.2 bits (117), Expect = 8e-08
 Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 8/108 (7%)

Query: 19  KPCDVFINHRGIDTKRKVATLLYDHL--SRLNLRPFLDNKNMKPGDKLFDNINRAIRNCK 76
                FI++   D    V   L  +L     ++   L      PG  + +NI   I    
Sbjct: 34  VRFHAFISYSEHD-SLWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSY 92

Query: 77  VGVAVFSPTYCQSYFCLHEL-----ALMMETKKKVIPIFCDIKPSQLL 119
             + V SP + Q+ +C +E       L  E    +I I  +  P   +
Sbjct: 93  KSIFVLSPNFVQNEWCHYEFYFAHHNLFHENSDHIILILLEPIPFYCI 140

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A Length = 149

 Score = 46.0 bits (109), Expect = 7e-07
 Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 9/105 (8%)

Query: 22  DVFINHRGIDTKRKVATLLYDHL--SRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGV 79
           D F+++   D    V  L+   L       +  L  ++   G  + DNI  +I      V
Sbjct: 7   DAFVSYSERDAYW-VENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTV 65

Query: 80  AVFSPTYCQSYFCLHEL-----ALMMETKKKVIPIFC-DIKPSQL 118
            V S  + +S +  +EL      L  E     I I    I+   +
Sbjct: 66  FVLSENFVKSEWXKYELDFSHFRLFDENNDAAILILLEPIEKKAI 110

>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A Length = 160

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 6/77 (7%)

Query: 48  NLRPFLDNKNMKPGDKLFDNINRAI-RNCKVGVAVFSPTYCQSYFCLHEL-----ALMME 101
            L+  + ++++ PG  ++   +  I + C+  V V S  Y QS  C  +           
Sbjct: 44  RLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECDFQTKFALSLSPGA 103

Query: 102 TKKKVIPIFCDIKPSQL 118
            +K++IPI       + 
Sbjct: 104 HQKRLIPIKYKAMKKEF 120

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens} Length = 159

 Score = 42.0 bits (98), Expect = 2e-05
 Identities = 20/111 (18%), Positives = 46/111 (41%), Gaps = 17/111 (15%)

Query: 19  KPCDVFINHRGIDTKRK----------VATLLYDHL-SRLNLRPFLDNKNMKPGDKLFDN 67
           K  D ++++  +D  +              +L D L      + F+ ++++ P     ++
Sbjct: 1   KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIED 60

Query: 68  INRAIRNCKVGVAVFSPTY-CQSYFCLHEL-----ALMMETKKKVIPIFCD 112
           + R +   K  + V +P Y  +  + + EL      +++  + KVI I C 
Sbjct: 61  VARCVDQSKRLIIVMTPNYVVRRGWSIFELETRLRNMLVTGEIKVILIECS 111

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 2e-04
 Identities = 24/175 (13%), Positives = 47/175 (26%), Gaps = 72/175 (41%)

Query: 13  LRNQAIKPCDVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAI 72
           L  + +       N R +     +A  + D L+  +      + N        D +   I
Sbjct: 318 LPREVLT-----TNPRRLSI---IAESIRDGLATWD---NWKHVN-------CDKLTTII 359

Query: 73  RNCKVGVAVFSPTYCQSYFCLHELALMMETKKKVIPIFCDIK-PSQLLVIDDGKCSANEL 131
            +    + V  P   +  F    L++                 P+ LL +          
Sbjct: 360 ESS---LNVLEPAEYRKMF--DRLSVFPP----------SAHIPTILLSL---------- 394

Query: 132 RRFSWALEEAKFTVGLTFDSLKGNWSDIVTSASDIII-----RSLMEIDYKEQRH 181
                               +   W D++ S   +++      SL+E   KE   
Sbjct: 395 --------------------I---WFDVIKSDVMVVVNKLHKYSLVEKQPKESTI 426

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	192
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	100.0
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	100.0
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	99.97
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	99.93
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	99.9
2js7_A	160	Myeloid differentiation primary response protein M	99.9
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	99.89
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	99.89
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.73
1eiw_A	111	Hypothetical protein MTH538; CHEY-like fold, flavo	98.61
3hyn_A	189	Putative signal transduction protein; DUF1863 fami	97.98
2f62_A	161	Nucleoside 2-deoxyribosyltransferase; SGPP, struct	95.27
4fyk_A	152	Deoxyribonucleoside 5'-monophosphate N-glycosidas;	93.48
2khz_A	165	C-MYC-responsive protein RCL; flexible loop, nucle	92.1
3ehd_A	162	Uncharacterized conserved protein; PSI,MCSG,PF0501	91.09
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	85.49
1s2d_A	167	Purine trans deoxyribosylase; ribosylate intermedi	84.55
2yvq_A	143	Carbamoyl-phosphate synthase; conserved hypothetic	83.71

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}

Probab=100.00  E-value=1.9e-50  Score=320.29  Aligned_cols=158  Identities=25%  Similarity=0.425  Sum_probs=129.1

Q ss_pred             CCCCCCCccEEEecccccCchhHHHHHHHHHhcCCCeeEEeCCCCCCCCchHHHHHHHHHhcceeEEEecCCCCCchhHH
Q 044205           14 RNQAIKPCDVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVFSPTYCQSYFCL   93 (192)
Q Consensus        14 ~~~~~~~ydVFISy~~~D~~~~fv~~L~~~L~~~gi~vf~D~~~l~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~   93 (192)
                      +.+..++|||||||+|+|+|++|+++|+.+|+++||++|+|++++.+|+.+.++|.+||++|+++|+|||+||++|+||+
T Consensus         2 sss~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl   81 (176)
T 3jrn_A            2 SSHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCL   81 (176)
T ss_dssp             -----CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHH
T ss_pred             CCCCCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHH
Confidence            45678999999999999999899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhc----CceeeEEeecCCCcccccccCCC-----------chhHhhhHHHHHHHHHHhcCccccCCCCCHHH
Q 044205           94 HELALMMETK----KKVIPIFCDIKPSQLLVIDDGKC-----------SANELRRFSWALEEAKFTVGLTFDSLKGNWSD  158 (192)
Q Consensus        94 ~EL~~~~~~~----~~ViPVf~~v~p~~vr~~~~g~~-----------~~~~~~~W~~aL~~~~~~~G~~~~~~~~~~~~  158 (192)
                      +||.+|++|.    +.||||||+|+|++||+|+ |.|           +++++++|+.||+++|+++||++.   ++|++
T Consensus        82 ~EL~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~-g~fg~af~~~~~~~~~~~~~~Wr~AL~~va~~~G~~~~---~~e~~  157 (176)
T 3jrn_A           82 DELVTIMDFEKKGSITVMPIFYGVEPNHVRWQT-GVLAEQFKKHASREDPEKVLKWRQALTNFAQLSGDCSG---DDDSK  157 (176)
T ss_dssp             HHHHHHHHHHHTTSCEEEEEECSSCHHHHHHTC-THHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSCCEECC---SCHHH
T ss_pred             HHHHHHHhhhccCCCEEEEEEecCCHHHhhhcc-CcHHHHHHHHHhccCHHHHHHHHHHHHHHhcccceecC---CCHHH
Confidence            9999999874    5999999999999999998 765           457899999999999999999984   57999


Q ss_pred             HHHHHHHHHHHHhhhcC
Q 044205          159 IVTSASDIIIRSLMEID  175 (192)
Q Consensus       159 ~v~~Iv~~v~~~l~~~~  175 (192)
                      +|++||++|+++|+..|
T Consensus       158 ~i~~Iv~~v~~~l~~~~  174 (176)
T 3jrn_A          158 LVDKIANEISNKKTIYA  174 (176)
T ss_dssp             HHHHHHHHHHTTCC---
T ss_pred             HHHHHHHHHHHHhcCCC
Confidence            99999999999997654

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}

Probab=100.00  E-value=2.8e-49  Score=319.18  Aligned_cols=156  Identities=25%  Similarity=0.421  Sum_probs=144.4

Q ss_pred             CCCCCccEEEecccccCchhHHHHHHHHHhcCCCeeEEeCCCCCCCCchHHHHHHHHHhcceeEEEecCCCCCchhHHHH
Q 044205           16 QAIKPCDVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVFSPTYCQSYFCLHE   95 (192)
Q Consensus        16 ~~~~~ydVFISy~~~D~~~~fv~~L~~~L~~~gi~vf~D~~~l~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~E   95 (192)
                      .+.++|||||||+|+|+|++|+++|+.+|+++||++|+|++++.+|+.+.++|.+||++|+++|+|||++|++|.||++|
T Consensus        31 ~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~E  110 (204)
T 3ozi_A           31 FPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLME  110 (204)
T ss_dssp             ---CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHHH
T ss_pred             CCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHHH
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhc-----CceeeEEeecCCCcccccccCCC-----------chhHhhhHHHHHHHHHHhcCccccCCCCCHHHH
Q 044205           96 LALMMETK-----KKVIPIFCDIKPSQLLVIDDGKC-----------SANELRRFSWALEEAKFTVGLTFDSLKGNWSDI  159 (192)
Q Consensus        96 L~~~~~~~-----~~ViPVf~~v~p~~vr~~~~g~~-----------~~~~~~~W~~aL~~~~~~~G~~~~~~~~~~~~~  159 (192)
                      |.+|++|.     ++||||||+|+|++||+|+ |.|           .++++++|+.||+++|+++||++.. ..+++++
T Consensus       111 L~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~-g~fg~af~~~~~~~~~~~v~~Wr~AL~~va~lsG~~~~~-~~~e~~~  188 (204)
T 3ozi_A          111 LAEIVRRQEEDPRRIILPIFYMVDPSDVRHQT-GCYKKAFRKHANKFDGQTIQNWKDALKKVGDLKGWHIGK-NDKQGAI  188 (204)
T ss_dssp             HHHHHHHHHHCTTSEECCEEESSCHHHHHHTC-TTHHHHHHHHTTTSCHHHHHHHHHHHHHHHTSCBEEECT-TSCHHHH
T ss_pred             HHHHHHHHHhcCCeeeEEEEeecCHHHHHhcc-ccHHHHHHHHHHhhCHHHHHHHHHHHHHHhccCceecCC-CCCHHHH
Confidence            99999873     5899999999999999998 765           4578999999999999999999975 5689999


Q ss_pred             HHHHHHHHHHHhhh
Q 044205          160 VTSASDIIIRSLME  173 (192)
Q Consensus       160 v~~Iv~~v~~~l~~  173 (192)
                      |++||++|.++|.+
T Consensus       189 i~~Iv~di~~kl~~  202 (204)
T 3ozi_A          189 ADKVSADIWSHISK  202 (204)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999999964

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}

Probab=99.97  E-value=5.7e-32  Score=209.75  Aligned_cols=108  Identities=20%  Similarity=0.424  Sum_probs=101.5

Q ss_pred             CCCCccEEEecccccCchhHHHHHHHHHhcCCCeeEEeCCCCCCCCchHHHHHHHHHhcceeEEEecCCCCCchhHHHHH
Q 044205           17 AIKPCDVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVFSPTYCQSYFCLHEL   96 (192)
Q Consensus        17 ~~~~ydVFISy~~~D~~~~fv~~L~~~L~~~gi~vf~D~~~l~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~EL   96 (192)
                      +.++|||||||+++| +..|+.+|+.+|+++|+++|+|.+++.+|+.|.++|.++|++|+++|+|+|++|++|.||++||
T Consensus        17 ~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~El   95 (154)
T 3h16_A           17 SAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKEL   95 (154)
T ss_dssp             -CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHHH
T ss_pred             CCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHHH
Confidence            468999999999999 5679999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhc----CceeeEEeecCCCcccccccCCC
Q 044205           97 ALMMETK----KKVIPIFCDIKPSQLLVIDDGKC  126 (192)
Q Consensus        97 ~~~~~~~----~~ViPVf~~v~p~~vr~~~~g~~  126 (192)
                      ..++++.    ++||||||+++|++|++|. |.|
T Consensus        96 ~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~-~~~  128 (154)
T 3h16_A           96 DGLFQLESSGRSRILPIWHKVSKDEVASFS-PTM  128 (154)
T ss_dssp             HHHTCCCTTSCCCEEEEEESCCTGGGTTTC-CCC
T ss_pred             HHHHHHHhcCCCEEEEEEecCCHHHHhhCC-ccH
Confidence            9999863    5899999999999999997 765

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A

Probab=99.93  E-value=2.3e-27  Score=182.74  Aligned_cols=103  Identities=20%  Similarity=0.336  Sum_probs=77.7

Q ss_pred             CCCCCCccEEEecccccCchhHHHHHHHHHhc--CCCeeEEeCCCCCCCCchHHHHHHHHHhcceeEEEecCCCCCchhH
Q 044205           15 NQAIKPCDVFINHRGIDTKRKVATLLYDHLSR--LNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVFSPTYCQSYFC   92 (192)
Q Consensus        15 ~~~~~~ydVFISy~~~D~~~~fv~~L~~~L~~--~gi~vf~D~~~l~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~~S~wc   92 (192)
                      +...+.|||||||+++|+  .||.+|..+|++  .|+++|+|++++.+|+.+.++|.++|++|+++|+|+|++|++|.||
T Consensus         5 ~r~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc   82 (146)
T 3ub2_A            5 SRWSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWC   82 (146)
T ss_dssp             CTTSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHH
T ss_pred             CCCCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHH
Confidence            456789999999999996  579999999998  5999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhc----CceeeEEeecCCCccc
Q 044205           93 LHELALMMETK----KKVIPIFCDIKPSQLL  119 (192)
Q Consensus        93 ~~EL~~~~~~~----~~ViPVf~~v~p~~vr  119 (192)
                      ..|+..|+.+.    ++||||||+++++++.
T Consensus        83 ~~El~~al~~~~~~~~~vIpv~~~v~~~~lp  113 (146)
T 3ub2_A           83 KYQMLQALTEAPGAEGCTIPLLSGLSRAAYP  113 (146)
T ss_dssp             HHHHHHHHHTSSSSSSEEEEEECSCCGGGSC
T ss_pred             HHHHHHHHHHHhhcCCcEEEEEcCCChhhCC
Confidence            99999999763    3788999998755543

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A

Probab=99.90  E-value=4.1e-25  Score=170.48  Aligned_cols=101  Identities=19%  Similarity=0.251  Sum_probs=89.7

Q ss_pred             CCCCccEEEecccccCchhHHHH-HHHHHhcC--CCeeEEeCCCCCCCCchHHHHHHHHHhcceeEEEecCCCCCchhHH
Q 044205           17 AIKPCDVFINHRGIDTKRKVATL-LYDHLSRL--NLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVFSPTYCQSYFCL   93 (192)
Q Consensus        17 ~~~~ydVFISy~~~D~~~~fv~~-L~~~L~~~--gi~vf~D~~~l~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~   93 (192)
                      .++.|||||||+++|.  .||.+ |...|++.  |+++|+|++++.+|+.+.++|.++|++|+++|+|+||+|++|.||.
T Consensus         2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~   79 (149)
T 1fyx_A            2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK   79 (149)
T ss_dssp             CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred             CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence            3578999999999995  79996 99999986  9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHh-----hcCceeeEEee-cCCCccc
Q 044205           94 HELALMME-----TKKKVIPIFCD-IKPSQLL  119 (192)
Q Consensus        94 ~EL~~~~~-----~~~~ViPVf~~-v~p~~vr  119 (192)
                      .|+..|+.     .++.||||||+ +++..+.
T Consensus        80 ~El~~a~~~~~~~~~~~vIpv~~~~i~~~~~p  111 (149)
T 1fyx_A           80 YELDFSHFRLFDENNDAAILILLEPIEKKAIP  111 (149)
T ss_dssp             HHSCCSCCTTCGGGTTCCEEEESSCCCTTTSC
T ss_pred             HHHHHHHHHHHhcCCCEEEEEEecCCChhhcC
Confidence            99999874     24589999995 4444443

>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A

Probab=99.90  E-value=7e-25  Score=171.21  Aligned_cols=99  Identities=21%  Similarity=0.323  Sum_probs=90.0

Q ss_pred             CCCCCCccEEEecccccCchhHHHHHHHHHhcC--CCeeEEeCCCCCCCCchHHHHHHHHH-hcceeEEEecCCCCCchh
Q 044205           15 NQAIKPCDVFINHRGIDTKRKVATLLYDHLSRL--NLRPFLDNKNMKPGDKLFDNINRAIR-NCKVGVAVFSPTYCQSYF   91 (192)
Q Consensus        15 ~~~~~~ydVFISy~~~D~~~~fv~~L~~~L~~~--gi~vf~D~~~l~~G~~~~~~i~~aI~-~S~~~Ivv~S~~y~~S~w   91 (192)
                      ++..+.|||||||+++|  ..||.+|..+|++.  |+++|+|++++.+|+.+.++|.++|+ +|+.+|+|+|++|++|.|
T Consensus        11 ~~~~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~w   88 (160)
T 2js7_A           11 GHMPERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKE   88 (160)
T ss_dssp             SCCTTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHH
T ss_pred             CCCCcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHH
Confidence            44578999999999999  47999999999984  69999999999999999999999999 799999999999999999


Q ss_pred             HHHHHHHHHhh-----cCceeeEEeecCC
Q 044205           92 CLHELALMMET-----KKKVIPIFCDIKP  115 (192)
Q Consensus        92 c~~EL~~~~~~-----~~~ViPVf~~v~p  115 (192)
                      |..|+..|+++     ++.||||+|+.-+
T Consensus        89 c~~El~~a~~~~~~~~~~~vIpV~~~~~~  117 (160)
T 2js7_A           89 CDFQTKFALSLSPGAHQKRLIPIKYKAMK  117 (160)
T ss_dssp             HHHHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred             HHHHHHHHHHHHHccCCCEEEEEEEcccc
Confidence            99999999975     2489999997653

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A

Probab=99.89  E-value=1.8e-24  Score=171.66  Aligned_cols=98  Identities=19%  Similarity=0.252  Sum_probs=87.8

Q ss_pred             CCCCCCccEEEecccccCchhHHHH-HHHHHhc--CCCeeEEeCCCCCCCCchHHHHHHHHHhcceeEEEecCCCCCchh
Q 044205           15 NQAIKPCDVFINHRGIDTKRKVATL-LYDHLSR--LNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVFSPTYCQSYF   91 (192)
Q Consensus        15 ~~~~~~ydVFISy~~~D~~~~fv~~-L~~~L~~--~gi~vf~D~~~l~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~~S~w   91 (192)
                      .+..+.|||||||+++|.  +||.. |...|++  .|+++|+|++++.+|+.+.++|.++|++|+.+|+|+||+|++|.|
T Consensus        30 ~~~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~w  107 (178)
T 2j67_A           30 LKRNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEW  107 (178)
T ss_dssp             CCCSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTG
T ss_pred             cCCCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccch
Confidence            456789999999999995  79975 9999998  899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhh-----cCceeeEEeecC
Q 044205           92 CLHELALMMET-----KKKVIPIFCDIK  114 (192)
Q Consensus        92 c~~EL~~~~~~-----~~~ViPVf~~v~  114 (192)
                      |..|+..|+.+     ++.||||||+.-
T Consensus       108 c~~El~~a~~~~~~~~~~~vIpV~~~~i  135 (178)
T 2j67_A          108 CHYEFYFAHHNLFHENSDHIILILLEPI  135 (178)
T ss_dssp             GGTHHHHTTCC-------CEEEEESSCC
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEEEecCC
Confidence            99999999853     358999999643

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}

Probab=99.89  E-value=6.3e-24  Score=165.62  Aligned_cols=98  Identities=19%  Similarity=0.402  Sum_probs=87.1

Q ss_pred             CCccEEEecccccC---------chhHHHHHHH-HHh-cCCCeeEEeCCCCCCCCchHHHHHHHHHhcceeEEEecCCCC
Q 044205           19 KPCDVFINHRGIDT---------KRKVATLLYD-HLS-RLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVFSPTYC   87 (192)
Q Consensus        19 ~~ydVFISy~~~D~---------~~~fv~~L~~-~L~-~~gi~vf~D~~~l~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~   87 (192)
                      +.|||||||+++|.         ++.||.+|.. .|+ +.|+++|+|++++.+|+.+.++|.++|++|+.+|+|+|++|+
T Consensus         1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~   80 (159)
T 1t3g_A            1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV   80 (159)
T ss_dssp             CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred             CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence            57999999999996         3679988665 699 799999999999999999999999999999999999999997


Q ss_pred             -CchhHHHHHHHHHhh-----cCceeeEEeecCCC
Q 044205           88 -QSYFCLHELALMMET-----KKKVIPIFCDIKPS  116 (192)
Q Consensus        88 -~S~wc~~EL~~~~~~-----~~~ViPVf~~v~p~  116 (192)
                       .|.||..|+..|+.+     +..||||+++..+.
T Consensus        81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~~  115 (159)
T 1t3g_A           81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELRG  115 (159)
T ss_dssp             HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCCS
T ss_pred             hcChHHHHHHHHHHHHHHhcCCCEEEEEEeccccc
Confidence             999999999998864     35899999976554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.73  E-value=5.6e-18  Score=160.20  Aligned_cols=100  Identities=17%  Similarity=0.306  Sum_probs=89.1

Q ss_pred             CCCCCCccEEEecccccCchhHH-HHHHHHHhc-----CCCeeEEeCCCCCCCCchHHHHHHHHHhcceeEEEecCCCCC
Q 044205           15 NQAIKPCDVFINHRGIDTKRKVA-TLLYDHLSR-----LNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVFSPTYCQ   88 (192)
Q Consensus        15 ~~~~~~ydVFISy~~~D~~~~fv-~~L~~~L~~-----~gi~vf~D~~~l~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~~   88 (192)
                      ....+.|||||||+++|.  .|| ..|...|+.     .|+++|++++|+.||+.+.++|.++|++|+.+|+|+|++|+.
T Consensus       665 ~~~~~~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~  742 (844)
T 3j0a_A          665 EPDMYKYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLR  742 (844)
T ss_dssp             SSSCCCCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHH
T ss_pred             cccceeccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEecccccc
Confidence            446789999999999995  577 679999985     589999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHhh-----cCceeeEEeecCCC
Q 044205           89 SYFCLHELALMMET-----KKKVIPIFCDIKPS  116 (192)
Q Consensus        89 S~wc~~EL~~~~~~-----~~~ViPVf~~v~p~  116 (192)
                      |.||..|+..|+.+     +++||||||+..|.
T Consensus       743 s~wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~~  775 (844)
T 3j0a_A          743 DGWCLEAFSYAQGRCLSDLNSALIMVVVGSLSQ  775 (844)
T ss_dssp             HTSTTHHHHHHHSCCCCSSCTTEEEEESSCCCS
T ss_pred             ChHHHHHHHHHHHHHHHhcCCcEEEEEeccCCh
Confidence            99999999998743     46899999975543

>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1

Probab=98.61  E-value=3e-08  Score=72.44  Aligned_cols=74  Identities=9%  Similarity=0.082  Sum_probs=59.6

Q ss_pred             CCCccEEEecccccCchhHHHHHHHHHhcCCCeeEEeCCCCCCCCchHHHHHHHHHhcceeEEEecCCCCCchhHHHHHH
Q 044205           18 IKPCDVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVFSPTYCQSYFCLHELA   97 (192)
Q Consensus        18 ~~~ydVFISy~~~D~~~~fv~~L~~~L~~~gi~vf~D~~~l~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~EL~   97 (192)
                      .++|.+||||+.+| .   ...|...|.+.|+.. .|               ..|+.|+++|++.++...+|+||..|+.
T Consensus         2 ~~~~~lFISh~~~d-~---~~~L~~~l~~~~f~~-~~---------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~   61 (111)
T 1eiw_A            2 TAEIRLYITEGEVE-D---YRVFLERLEQSGLEW-RP---------------ATPEDADAVIVLAGLWGTRRDEILGAVD   61 (111)
T ss_dssp             CCCEEEEECCCCSH-H---HHHHHHHHHHHCSCE-EE---------------CCSSSCSEEEEEGGGTTTSHHHHHHHHH
T ss_pred             CceEEEEEecccHh-H---HHHHHHHHhCCCCee-ec---------------CccccCCEEEEEeCCCcCCChHHHHHHH
Confidence            35899999999988 2   455555565556643 33               5589999999999999999999999999


Q ss_pred             HHHhhcCceeeEEe
Q 044205           98 LMMETKKKVIPIFC  111 (192)
Q Consensus        98 ~~~~~~~~ViPVf~  111 (192)
                      .|.+.+++|+-|.-
T Consensus        62 ~A~~~gkpIigV~~   75 (111)
T 1eiw_A           62 LARKSSKPIITVRP   75 (111)
T ss_dssp             HHTTTTCCEEEECC
T ss_pred             HHHHcCCCEEEEEc
Confidence            99999998887764

>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}

Probab=97.98  E-value=6.8e-05  Score=58.96  Aligned_cols=118  Identities=15%  Similarity=0.088  Sum_probs=86.7

Q ss_pred             CccEEEec--------------ccccCchhHHHHHHHHHhcCCCeeEEeCCCC----C---C-CCchHHHHHHHHHhcce
Q 044205           20 PCDVFINH--------------RGIDTKRKVATLLYDHLSRLNLRPFLDNKNM----K---P-GDKLFDNINRAIRNCKV   77 (192)
Q Consensus        20 ~ydVFISy--------------~~~D~~~~fv~~L~~~L~~~gi~vf~D~~~l----~---~-G~~~~~~i~~aI~~S~~   77 (192)
                      +--+|++|              ..+|.  ...+.|..--.+..+-.|.|..+.    .   . -..|...|.+.|..|+.
T Consensus         5 rn~~YvaF~~~~~~~~~~~~~~a~~Di--~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~   82 (189)
T 3hyn_A            5 QNANYSAFYVSEPFSESNLGANSTHDF--VYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKN   82 (189)
T ss_dssp             CCEEEEECCCCSSCCTTSTTGGGSTTH--HHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEE
T ss_pred             ccCcEEEEeccCcccccccCCCccchH--HHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCc
Confidence            34578888              44553  457778777777766667776544    2   2 34588999999999999


Q ss_pred             eEEEecCCCCCchhHHHHHHHHH-hhcCceeeEEeecC-CCcccccccCCCchhHhhhHHHHHHH
Q 044205           78 GVAVFSPTYCQSYFCLHELALMM-ETKKKVIPIFCDIK-PSQLLVIDDGKCSANELRRFSWALEE  140 (192)
Q Consensus        78 ~Ivv~S~~y~~S~wc~~EL~~~~-~~~~~ViPVf~~v~-p~~vr~~~~g~~~~~~~~~W~~aL~~  140 (192)
                      +|+++|++...|.|...|+..|+ +++.+||-|..+-. .+++.. .+|.+....-..|..++..
T Consensus        83 vIllIs~~T~~s~~v~wEIe~Ai~~~~~PII~Vy~~~~~~~~i~~-~~g~~~~~~~~~wpk~p~~  146 (189)
T 3hyn_A           83 IILFLSSITANSRALREEMNYGIGTKGLPVIVIYPDYDKKSDIVD-SNGNFKKQIKDLWDKLPAF  146 (189)
T ss_dssp             EEEECCTTCCCCHHHHHHHHHHTTTTCCCEEEEETTCCSGGGTBC-TTSCBCHHHHHHHHTCHHH
T ss_pred             EEEEEecCccccchhHHHHHHHHHhcCCcEEEEECCccccchhhh-ccccchhhHhhcCCcchhh
Confidence            99999999999999999999999 89999999987633 334443 2355555555678864443

>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*

Probab=95.27  E-value=0.12  Score=39.47  Aligned_cols=76  Identities=16%  Similarity=0.180  Sum_probs=55.6

Q ss_pred             hhHHHHHHHHHhcCCCeeEEeCCCCC-CCCchHHHHHHHHHhcceeEEEecC--CCCCchhHHHHHHHHHhhcCceeeE
Q 044205           34 RKVATLLYDHLSRLNLRPFLDNKNMK-PGDKLFDNINRAIRNCKVGVAVFSP--TYCQSYFCLHELALMMETKKKVIPI  109 (192)
Q Consensus        34 ~~fv~~L~~~L~~~gi~vf~D~~~l~-~G~~~~~~i~~aI~~S~~~Ivv~S~--~y~~S~wc~~EL~~~~~~~~~ViPV  109 (192)
                      ..+...+.+.|++.|+.+|.-.++-. .+..+.+.=.++|++|+++|++++|  .-..+.-+..|+..+...+++|+-+
T Consensus        26 ~~~~~~l~~~l~~~G~~v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~AlgKPVi~l  104 (161)
T 2f62_A           26 ASYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALNKMVLTF  104 (161)
T ss_dssp             HHHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHHHHCCCEEECCCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHCCCEEEEE
Confidence            36789999999999999987432111 1223333447899999999999996  3233455889999999999977654

>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*

Probab=93.48  E-value=0.36  Score=36.59  Aligned_cols=86  Identities=16%  Similarity=0.193  Sum_probs=58.0

Q ss_pred             cEEEe--cccccCchhHHHHHHHHHhcCCCeeEEeC---CCC-CCCC-------chHHHHHHHHHhcceeEEEecCCCCC
Q 044205           22 DVFIN--HRGIDTKRKVATLLYDHLSRLNLRPFLDN---KNM-KPGD-------KLFDNINRAIRNCKVGVAVFSPTYCQ   88 (192)
Q Consensus        22 dVFIS--y~~~D~~~~fv~~L~~~L~~~gi~vf~D~---~~l-~~G~-------~~~~~i~~aI~~S~~~Ivv~S~~y~~   88 (192)
                      .||++  +++.+....+...+.+.|++.| .|+...   .++ ..|+       .+.+.-.+.|++|+++|++++   ..
T Consensus         4 kIYlAGP~f~~~e~~~~~~~i~~~L~~~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~aD~vvA~l~---~~   79 (152)
T 4fyk_A            4 SVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQQADVVVAEVT---QP   79 (152)
T ss_dssp             EEEEECCSTTCCTTHHHHHHHHHHHTTTS-EECCCC-------------CCCHHHHHHHHHHHHHHCSEEEEECS---SC
T ss_pred             eEEEECCCCCcHHHHHHHHHHHHHHHHcC-cccccccCchhhhhccccccCCHHHHHHHHHHHHHHCCEEEEeCC---CC
Confidence            36665  3332333467899999999999 675421   111 1121       255556688999999999998   45


Q ss_pred             chhHHHHHHHHHhhcCceeeEEe
Q 044205           89 SYFCLHELALMMETKKKVIPIFC  111 (192)
Q Consensus        89 S~wc~~EL~~~~~~~~~ViPVf~  111 (192)
                      |.=...|+..|...+++|+-++-
T Consensus        80 d~Gt~~EiG~A~algkPV~~l~~  102 (152)
T 4fyk_A           80 SLGVGYELGRAVALGKPILCLFR  102 (152)
T ss_dssp             CHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CCCHHHHHHHHHHcCCeEEEEEe
Confidence            67788899999999997776554

>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*

Probab=92.10  E-value=1.3  Score=33.54  Aligned_cols=88  Identities=15%  Similarity=0.153  Sum_probs=58.7

Q ss_pred             CCCccEEEecccc--cCchhHHHHHHHHHhcCCCeeEEeCCC----CCCCC-------chHHHHHHHHHhcceeEEEecC
Q 044205           18 IKPCDVFINHRGI--DTKRKVATLLYDHLSRLNLRPFLDNKN----MKPGD-------KLFDNINRAIRNCKVGVAVFSP   84 (192)
Q Consensus        18 ~~~ydVFISy~~~--D~~~~fv~~L~~~L~~~gi~vf~D~~~----l~~G~-------~~~~~i~~aI~~S~~~Ivv~S~   84 (192)
                      +++..|||+=.-.  .........+.+.|++.| .|+.+..-    -..|.       .+...-.+.|++|+++|++++ 
T Consensus         9 ~~~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~aD~vva~~~-   86 (165)
T 2khz_A            9 QAPCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQADVVVAEVT-   86 (165)
T ss_dssp             CCCCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHHHCSEEEEECS-
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHHHhCCEEEEECC-
Confidence            3455799983222  111224588999999999 88654321    11221       122333578999999999997 


Q ss_pred             CCCCchhHHHHHHHHHhhcCceeeE
Q 044205           85 TYCQSYFCLHELALMMETKKKVIPI  109 (192)
Q Consensus        85 ~y~~S~wc~~EL~~~~~~~~~ViPV  109 (192)
                        ..+.-+..|+..+...+++|+-+
T Consensus        87 --~~d~Gt~~EiGyA~algKPVi~l  109 (165)
T 2khz_A           87 --QPSLGVGYELGRAVALGKPILCL  109 (165)
T ss_dssp             --SCCHHHHHHHHHHHHTCSSEEEE
T ss_pred             --CCCCCHHHHHHHHHHCCCEEEEE
Confidence              45677999999999999988765

>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}

Probab=91.09  E-value=1.2  Score=33.87  Aligned_cols=75  Identities=12%  Similarity=0.166  Sum_probs=54.0

Q ss_pred             hHHHHHHHHHhcC--CCeeEEeCCCC----CCCCc----hHHHHHHHHHhcceeEEEecCCCCCchhHHHHHHHHHhhcC
Q 044205           35 KVATLLYDHLSRL--NLRPFLDNKNM----KPGDK----LFDNINRAIRNCKVGVAVFSPTYCQSYFCLHELALMMETKK  104 (192)
Q Consensus        35 ~fv~~L~~~L~~~--gi~vf~D~~~l----~~G~~----~~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~EL~~~~~~~~  104 (192)
                      .+...+.++|+..  |+.+|.-.++-    .++..    +...=.++|++|+++|+++.. ...+..+..|+..+...++
T Consensus        20 ~~~~~l~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~D~~~i~~aD~viA~ldg-~~~D~Gt~~EiG~A~a~gk   98 (162)
T 3ehd_A           20 RYNAYLVEQIRQLDKTIDLYLPQENAAINDKSAYADSKMIALADTENVLASDLLVALLDG-PTIDAGVASEIGVAYAKGI   98 (162)
T ss_dssp             HHHHHHHHHHHTTCTTEEEECGGGGSCCCCTTCCCCHHHHHHHHHHHHHTCSEEEEECCS-SSCCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhcCCCCEEECCCccccccccccchHHHHHHHHHHHHHHHCCEEEEECCC-CCCCCCHHHHHHHHHHCCC
Confidence            4678899999875  88888733221    12223    334445689999999999953 3456789999999999999


Q ss_pred             ceeeEE
Q 044205          105 KVIPIF  110 (192)
Q Consensus       105 ~ViPVf  110 (192)
                      +|+.+.
T Consensus        99 PVi~~~  104 (162)
T 3ehd_A           99 PVVALY  104 (162)
T ss_dssp             CEEEEC
T ss_pred             EEEEEE
Confidence            877664

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=85.49  E-value=7.9  Score=29.65  Aligned_cols=144  Identities=19%  Similarity=0.182  Sum_probs=77.8

Q ss_pred             EEecccccC--chhHHHHHHHHHhcCCCeeEEeCCCCCCCCchHHHHHHHHHhc--------------------------
Q 044205           24 FINHRGIDT--KRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNC--------------------------   75 (192)
Q Consensus        24 FISy~~~D~--~~~fv~~L~~~L~~~gi~vf~D~~~l~~G~~~~~~i~~aI~~S--------------------------   75 (192)
                      ||.+-|-|.  +.+.+..|.+.|+.+|++|..-.+  +.|..+.+.+.+.+...                          
T Consensus         2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tre--P~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~I~~~L   79 (197)
T 3hjn_A            2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE--PGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTEIKQYL   79 (197)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES--SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEC--CCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            888877664  245788899999999998866432  33444444433322111                          


Q ss_pred             ceeEEEecCCCCCchhHHH--------H----HHHHHhh-cCceeeEEeecCCCcccccc--cCCC-chhHhhhHHHHHH
Q 044205           76 KVGVAVFSPTYCQSYFCLH--------E----LALMMET-KKKVIPIFCDIKPSQLLVID--DGKC-SANELRRFSWALE  139 (192)
Q Consensus        76 ~~~Ivv~S~~y~~S~wc~~--------E----L~~~~~~-~~~ViPVf~~v~p~~vr~~~--~g~~-~~~~~~~W~~aL~  139 (192)
                      ..--+|++..|..|....+        +    |...... -.+=+-+|++++|.....-.  ..+| ..+..++-+++..
T Consensus        80 ~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~dr~e~~ef~~rv~~~y~  159 (197)
T 3hjn_A           80 SEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELNRFEKREFLERVREGYL  159 (197)
T ss_dssp             TTTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---CTTCCHHHHHHHHHHHH
T ss_pred             HCCCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcChHHHHHhCcCcCccccHHHHHHHHHHHH
Confidence            1123466777877765433        1    1111111 13555577888886532221  1233 2344556777777


Q ss_pred             HHHHhcCc--c-ccCCCCCHHHHHHHHHHHHHHH
Q 044205          140 EAKFTVGL--T-FDSLKGNWSDIVTSASDIIIRS  170 (192)
Q Consensus       140 ~~~~~~G~--~-~~~~~~~~~~~v~~Iv~~v~~~  170 (192)
                      +++...+.  . .+. +.+..+..++|.+.|.++
T Consensus       160 ~la~~~~~~~~~IDa-~~~~eeV~~~I~~~i~~r  192 (197)
T 3hjn_A          160 VLAREHPERIVVLDG-KRSIEEIHRDVVREVKRR  192 (197)
T ss_dssp             HHHHHCTTTEEEEET-TSCHHHHHHHHHHHHSCC
T ss_pred             HHHHhCCCCEEEEcC-CCCHHHHHHHHHHHHHHH
Confidence            77776553  2 343 345545555555555443

>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*

Probab=84.55  E-value=4.4  Score=30.77  Aligned_cols=86  Identities=17%  Similarity=0.223  Sum_probs=59.4

Q ss_pred             cEEEe---cccccCchhHHHHHHHHHhcC--CCeeEEeCCC-C--------CCC--------CchHHHHHHHHHhcceeE
Q 044205           22 DVFIN---HRGIDTKRKVATLLYDHLSRL--NLRPFLDNKN-M--------KPG--------DKLFDNINRAIRNCKVGV   79 (192)
Q Consensus        22 dVFIS---y~~~D~~~~fv~~L~~~L~~~--gi~vf~D~~~-l--------~~G--------~~~~~~i~~aI~~S~~~I   79 (192)
                      .||+.   |+..+  ..+...+.+.|++.  |+.+|.-.++ .        ..|        ..+.+.=.++|++|+++|
T Consensus         9 kIYLAGP~F~~~~--~~~~~~~~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~vV   86 (167)
T 1s2d_A            9 KIYLGSPFYSDAQ--RERAAKAKELLAKNPSIAHVFFPFDDGFTDPDEKNPEIGGIRSMVWRDATYQNDLTGISNATCGV   86 (167)
T ss_dssp             EEEEECCCSSHHH--HHHHHHHHHHHTTCTTEEEEECTTC-CCCCTTCC-CCTTSCCCHHHHHHHHHHHHHHHHHCSEEE
T ss_pred             EEEEECCCCCHHH--HHHHHHHHHHHHhCCCcCEEECCccccccccccccccccccCChHHHHHHHHHHHHHHHhCCEEE
Confidence            47776   23222  35788999999999  8888864331 1        111        123344457899999999


Q ss_pred             EEecCCCCCchhHHHHHHHHHhhcCceeeEE
Q 044205           80 AVFSPTYCQSYFCLHELALMMETKKKVIPIF  110 (192)
Q Consensus        80 vv~S~~y~~S~wc~~EL~~~~~~~~~ViPVf  110 (192)
                      +++...-. ++=+..|+..+...+++|+-+.
T Consensus        87 A~ldg~~~-D~GTa~EiGyA~algKPVv~l~  116 (167)
T 1s2d_A           87 FLYDMDQL-DDGSAFXIGFMRAMHKPVILVP  116 (167)
T ss_dssp             EEEESSSC-CHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EECCCCCC-CCCceeehhhHhhCCCeEEEEE
Confidence            99987554 4568889999999999887764

>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}

Probab=83.71  E-value=2.1  Score=31.56  Aligned_cols=83  Identities=10%  Similarity=0.089  Sum_probs=48.5

Q ss_pred             cccchhhhccccCCCCCCCccEEEecccccCchhHHHHHHHHHhcCCCeeEEeC-------------CC---CCCC-Cc-
Q 044205            2 NLQRQVFRQNRLRNQAIKPCDVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDN-------------KN---MKPG-DK-   63 (192)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~ydVFISy~~~D~~~~fv~~L~~~L~~~gi~vf~D~-------------~~---l~~G-~~-   63 (192)
                      +|..-+.+.+.+.+..-.+.-||||.++.|.  .-+..+.+.|...|++++--.             ..   +.-| +. 
T Consensus         6 ~~~~A~~Ka~~aag~~lP~~gvliSv~d~dK--~~l~~~a~~l~~lGf~i~AT~GTa~~L~~~Gi~v~~v~k~~egg~~~   83 (143)
T 2yvq_A            6 SGHTAFLKAMLSTGFKIPQKGILIGIQQSFR--PRFLGVAEQLHNEGFKLFATEATSDWLNANNVPATPVAWPSQEGQNP   83 (143)
T ss_dssp             CCCHHHHHHHTSCSCCCCCSEEEEECCGGGH--HHHHHHHHHHHTTTCEEEEEHHHHHHHHHTTCCCEEECCGGGC----
T ss_pred             CHHHHHHHHHHhcCCCCCCCCEEEEecccch--HHHHHHHHHHHHCCCEEEECchHHHHHHHcCCeEEEEEeccCCCccc
Confidence            4555566666655443322229999987663  335567778888888877211             11   1112 10 


Q ss_pred             hHHHHHHHHHhcceeEEEecCCC
Q 044205           64 LFDNINRAIRNCKVGVAVFSPTY   86 (192)
Q Consensus        64 ~~~~i~~aI~~S~~~Ivv~S~~y   86 (192)
                      -.++|.+.|++-++-+||.+|+-
T Consensus        84 ~~~~i~d~i~~g~i~lVInt~~~  106 (143)
T 2yvq_A           84 SLSSIRKLIRDGSIDLVINLPNN  106 (143)
T ss_dssp             -CBCHHHHHHTTSCCEEEECCCC
T ss_pred             ccccHHHHHHCCCceEEEECCCC
Confidence            00357777888888888887765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	192
d1fyva_	161	c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (H	3e-12
d1fyxa_	149	c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (H	2e-09

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.7 bits (144), Expect = 3e-12
 Identities = 23/104 (22%), Positives = 42/104 (40%), Gaps = 7/104 (6%)

Query: 22  DVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAV 81
             FI++ G D+   V   L  +L +  ++  L  +N  PG  + +NI   I      + V
Sbjct: 14  HAFISYSGHDS-FWVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYKSIFV 72

Query: 82  FSPTYCQSYFCLHELALMME------TKKKVIPIFCDIKPSQLL 119
            SP + QS +C +EL           +   ++ +   I    + 
Sbjct: 73  LSPNFVQSEWCHYELYFAHHNLFHEGSNSLILILLEPIPQYSIP 116

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (123), Expect = 2e-09
 Identities = 24/105 (22%), Positives = 39/105 (37%), Gaps = 9/105 (8%)

Query: 22  DVFINHRGIDTKRKVATLLYDHL--SRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGV 79
           D F+++   D    V  L+   L       +  L  ++   G  + DNI  +I      V
Sbjct: 7   DAFVSYSERDAYW-VENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIEKSHKTV 65

Query: 80  AVFSPTYCQSYFCLHEL-----ALMMETKKKVIPIF-CDIKPSQL 118
            V S  + +S +C +EL      L  E     I I    I+   +
Sbjct: 66  FVLSENFVKSEWCKYELDFSHFRLFDENNDAAILILLEPIEKKAI 110

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	192
d1fyva_	161	Toll-like receptor 1, TLR1 {Human (Homo sapiens) [	99.87
d1fyxa_	149	Toll-like receptor 2, TLR2 {Human (Homo sapiens) [	99.85
d2f62a1	152	Nucleoside 2-deoxyribosyltransferase {Trypanosoma	95.53
d1wu7a1	97	Histidyl-tRNA synthetase (HisRS), C-terminal domai	92.6
d1s2da_	167	Purine transdeoxyribosylase {Lactobacillus helveti	89.67
d1eiwa_	111	Hypothetical protein MTH538 {Archaeon Methanobacte	89.27
d1f8ya_	156	Nucleoside 2-deoxyribosyltransferase {Lactobacillu	88.8
d1qe0a1	95	Histidyl-tRNA synthetase (HisRS), C-terminal domai	83.63
d1qf6a1	110	Threonyl-tRNA synthetase (ThrRS), C-terminal domai	82.62
d1nyra1	113	Threonyl-tRNA synthetase (ThrRS), C-terminal domai	82.17
d1kmma1	99	Histidyl-tRNA synthetase (HisRS), C-terminal domai	80.91

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.3e-23  Score=160.54  Aligned_cols=101  Identities=25%  Similarity=0.358  Sum_probs=90.1

Q ss_pred             cCCCCCCCccEEEecccccCchhHH-HHHHHHHhcCCCeeEEeCCCCCCCCchHHHHHHHHHhcceeEEEecCCCCCchh
Q 044205           13 LRNQAIKPCDVFINHRGIDTKRKVA-TLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVFSPTYCQSYF   91 (192)
Q Consensus        13 ~~~~~~~~ydVFISy~~~D~~~~fv-~~L~~~L~~~gi~vf~D~~~l~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~~S~w   91 (192)
                      .....+++|||||||+++|.  .|| ..|...|+++|+++|+|++++.+|+.+.++|.++|++|+.+|+|+|++|..|.|
T Consensus         5 ~~~~~~~~yDvFisys~~D~--~~v~~~L~~~Le~~g~~v~~d~~d~~~G~~~~~~i~~~i~~s~~~i~vlS~~~~~s~w   82 (161)
T d1fyva_           5 EELQRNLQFHAFISYSGHDS--FWVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYKSIFVLSPNFVQSEW   82 (161)
T ss_dssp             TTSSSCCCEEEEEECCGGGH--HHHHHTHHHHHHTTTCCEECTTTTCCTTSCHHHHHHHHHHHEEEEEEEESHHHHHHTS
T ss_pred             hHcCCCCeeEEEEecChhHH--HHHHHHHHHHHHhCCCcceEeccccccccccHHHHHHHHHhCCEEEEEecCccccChH
Confidence            33456789999999999994  567 569999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhh-----cCceeeEEeecCC
Q 044205           92 CLHELALMMET-----KKKVIPIFCDIKP  115 (192)
Q Consensus        92 c~~EL~~~~~~-----~~~ViPVf~~v~p  115 (192)
                      |..|+..++..     ++++|||+++..|
T Consensus        83 ~~~E~~~a~~~~~~~~~~~lIpV~l~~~~  111 (161)
T d1fyva_          83 CHYELYFAHHNLFHEGSNSLILILLEPIP  111 (161)
T ss_dssp             HHHHHHTTSCCCSCSSCSSEEEEESSCCC
T ss_pred             HHHHHHHHHHHHHHcCCCceeEEEEecCc
Confidence            99999999753     4589999997443

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=8.1e-23  Score=155.49  Aligned_cols=96  Identities=21%  Similarity=0.264  Sum_probs=85.3

Q ss_pred             CCCCccEEEecccccCchhHH-HHHHHHHhc--CCCeeEEeCCCCCCCCchHHHHHHHHHhcceeEEEecCCCCCchhHH
Q 044205           17 AIKPCDVFINHRGIDTKRKVA-TLLYDHLSR--LNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVFSPTYCQSYFCL   93 (192)
Q Consensus        17 ~~~~ydVFISy~~~D~~~~fv-~~L~~~L~~--~gi~vf~D~~~l~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~   93 (192)
                      .++.|||||||+++|.  .|| ..|...|++  .|+++|+|++++.+|+.+.++|.++|++|+++|+|+||+|+.|.||.
T Consensus         2 ~~~~YDvFiSys~~D~--~~V~~~l~~~LE~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~S~~~i~vlS~~~l~s~wc~   79 (149)
T d1fyxa_           2 RNICYDAFVSYSERDA--YWVENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWCK   79 (149)
T ss_dssp             CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred             CCCEEEEEEECchhhH--HHHHHHHHHHHHhcCCCceEEEecccccccchHHHHHHHHHHhCCEEEEEEcCccccccchH
Confidence            5789999999999993  566 468999976  49999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHh-----hcCceeeEEeecC
Q 044205           94 HELALMME-----TKKKVIPIFCDIK  114 (192)
Q Consensus        94 ~EL~~~~~-----~~~~ViPVf~~v~  114 (192)
                      .|+..++.     .++++|||+++..
T Consensus        80 ~E~~~a~~~~~~~~~~~iIpV~l~~~  105 (149)
T d1fyxa_          80 YELDFSHFRLFDENNDAAILILLEPI  105 (149)
T ss_dssp             HHSCCSCCTTCGGGTTCCEEEESSCC
T ss_pred             HHHHHHHHHHHHcCCceEEEEEeccC
Confidence            99987753     3469999999743

>d2f62a1 c.23.14.1 (A:9-160) Nucleoside 2-deoxyribosyltransferase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N-(deoxy)ribosyltransferase-like
family: N-deoxyribosyltransferase
domain: Nucleoside 2-deoxyribosyltransferase
species: Trypanosoma brucei [TaxId: 5691]

Probab=95.53  E-value=0.042  Score=39.88  Aligned_cols=78  Identities=17%  Similarity=0.187  Sum_probs=57.1

Q ss_pred             cCchhHHHHHHHHHhcCCCeeEEeCCC-CCCCCchHHHHHHHHHhcceeEEEecCC--CCCchhHHHHHHHHHhhcCcee
Q 044205           31 DTKRKVATLLYDHLSRLNLRPFLDNKN-MKPGDKLFDNINRAIRNCKVGVAVFSPT--YCQSYFCLHELALMMETKKKVI  107 (192)
Q Consensus        31 D~~~~fv~~L~~~L~~~gi~vf~D~~~-l~~G~~~~~~i~~aI~~S~~~Ivv~S~~--y~~S~wc~~EL~~~~~~~~~Vi  107 (192)
                      |....+...+...|+..|+.++.-.++ ......+...-.++|++|+++|++++|-  -..++=+..|+..+...+++|+
T Consensus        15 d~~~~~~~~i~~~l~~~g~~~~~P~d~~~~~~~~If~~d~~~i~~~D~VIA~Ld~frg~~~D~GTa~EiG~A~algKPVi   94 (152)
T d2f62a1          15 DMGASYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALNKMVL   94 (152)
T ss_dssp             TTTHHHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHHHHHHHHHHHCCCEEeccccccchhHHHHHHHHHHHHHhCCEEEEEccccCCCCCCchHHHHHHHHHHCCCeEE
Confidence            334567889999999999999863322 2222346666678999999999999852  2234568899999999999664


Q ss_pred             e
Q 044205          108 P  108 (192)
Q Consensus       108 P  108 (192)
                      -
T Consensus        95 ~   95 (152)
T d2f62a1          95 T   95 (152)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=92.60  E-value=0.2  Score=32.84  Aligned_cols=61  Identities=11%  Similarity=0.041  Sum_probs=45.7

Q ss_pred             CCccEEEecccccCchhHHHHHHHHHhcCCCeeEEeCCCCCCCCchHHHHHHHHHhcceeEEEecC
Q 044205           19 KPCDVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVFSP   84 (192)
Q Consensus        19 ~~ydVFISy~~~D~~~~fv~~L~~~L~~~gi~vf~D~~~l~~G~~~~~~i~~aI~~S~~~Ivv~S~   84 (192)
                      ...+|||..-++.. ..++..|...|++.||+|.+|..    +..+...+..|-..---+++++.+
T Consensus         2 ~~~~V~i~~~g~~~-~~~~~~l~~~Lr~~gi~v~~d~~----~~~l~kq~~~A~~~~~~~~iiiG~   62 (97)
T d1wu7a1           2 EKKSVYICRVGKIN-SSIMNEYSRKLRERGMNVTVEIM----ERGLSAQLKYASAIGADFAVIFGE   62 (97)
T ss_dssp             SSCEEEEEEESSCC-HHHHHHHHHHHHTTTCEEEECCS----CCCHHHHHHHHHHTTCSEEEEEEH
T ss_pred             CCceEEEEEeCHHH-HHHHHHHHHHHHHCCCEEEEECC----CCcHHHHHHHHHhcCCCeEEecCC
Confidence            46789999988775 46899999999999999999864    456777777766554445555543

>d1s2da_ c.23.14.1 (A:) Purine transdeoxyribosylase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N-(deoxy)ribosyltransferase-like
family: N-deoxyribosyltransferase
domain: Purine transdeoxyribosylase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=89.67  E-value=1.7  Score=30.99  Aligned_cols=92  Identities=16%  Similarity=0.170  Sum_probs=59.7

Q ss_pred             CccEEEeccc-ccCchhHHHHHHHHHhcCC--CeeEEeCCC-----------CCC--CC----chHHHHHHHHHhcceeE
Q 044205           20 PCDVFINHRG-IDTKRKVATLLYDHLSRLN--LRPFLDNKN-----------MKP--GD----KLFDNINRAIRNCKVGV   79 (192)
Q Consensus        20 ~ydVFISy~~-~D~~~~fv~~L~~~L~~~g--i~vf~D~~~-----------l~~--G~----~~~~~i~~aI~~S~~~I   79 (192)
                      +..|||+=.- .+........+.+.|++.|  +.+|.-.++           ...  ..    .+...=.++|++|+++|
T Consensus         7 ~~kIYLAgP~F~~~~~~~~~~~~~~L~~~~~~~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~~If~~D~~~i~~sD~vI   86 (167)
T d1s2da_           7 TGKIYLGSPFYSDAQRERAAKAKELLAKNPSIAHVFFPFDDGFTDPDEKNPEIGGIRSMVWRDATYQNDLTGISNATCGV   86 (167)
T ss_dssp             CEEEEEECCCSSHHHHHHHHHHHHHHTTCTTEEEEECTTC-CCCCTTCC-CCTTSCCCHHHHHHHHHHHHHHHHHCSEEE
T ss_pred             CceEEEECCCCCHHHHHHHHHHHHHHHhCCCcceEECCcccccccccccccccccccchHHHHHHHHHHHHHHHHCCEEE
Confidence            5567776311 1222457889999999988  566642111           000  00    12333447899999999


Q ss_pred             EEecCCCCCchhHHHHHHHHHhhcCceeeEEee
Q 044205           80 AVFSPTYCQSYFCLHELALMMETKKKVIPIFCD  112 (192)
Q Consensus        80 vv~S~~y~~S~wc~~EL~~~~~~~~~ViPVf~~  112 (192)
                      +++...... .=...|+..|...+++|+-+--+
T Consensus        87 A~ldg~~~D-~GTa~EiG~A~a~gKPvi~~~~d  118 (167)
T d1s2da_          87 FLYDMDQLD-DGSAFEIGFMRAMHKPVILVPFT  118 (167)
T ss_dssp             EEEESSSCC-HHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             EEeCCCCCC-ccHHHHHHHHHHCCCeEEEEecC
Confidence            999877654 35778999999999988776544

>d1eiwa_ c.23.3.1 (A:) Hypothetical protein MTH538 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Hypothetical protein MTH538
family: Hypothetical protein MTH538
domain: Hypothetical protein MTH538
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=89.27  E-value=0.15  Score=34.88  Aligned_cols=39  Identities=10%  Similarity=0.018  Sum_probs=34.5

Q ss_pred             HhcceeEEEecCCCCCchhHHHHHHHHHhhcCceeeEEe
Q 044205           73 RNCKVGVAVFSPTYCQSYFCLHELALMMETKKKVIPIFC  111 (192)
Q Consensus        73 ~~S~~~Ivv~S~~y~~S~wc~~EL~~~~~~~~~ViPVf~  111 (192)
                      ++++++|++.......|+|...|+..+.+.+++|+-|--
T Consensus        37 ~~~~vvIVL~G~yt~~r~WI~~EI~~A~~~~KpIIgV~p   75 (111)
T d1eiwa_          37 EDADAVIVLAGLWGTRRDEILGAVDLARKSSKPIITVRP   75 (111)
T ss_dssp             SSCSEEEEEGGGTTTSHHHHHHHHHHHTTTTCCEEEECC
T ss_pred             cCCCEEEEEeeccccCCHHHHHHHHHHHHcCCCeEEEEe
Confidence            778888888888888999999999999999998887753

>d1f8ya_ c.23.14.1 (A:) Nucleoside 2-deoxyribosyltransferase {Lactobacillus leichmannii [TaxId: 28039]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N-(deoxy)ribosyltransferase-like
family: N-deoxyribosyltransferase
domain: Nucleoside 2-deoxyribosyltransferase
species: Lactobacillus leichmannii [TaxId: 28039]

Probab=88.80  E-value=0.66  Score=33.14  Aligned_cols=90  Identities=13%  Similarity=0.148  Sum_probs=59.3

Q ss_pred             CccEEEe---cccccCchhHHHHHHHHHhcC----CCeeEEeCCC----CCCCC--------c----hHHHHHHHHHhcc
Q 044205           20 PCDVFIN---HRGIDTKRKVATLLYDHLSRL----NLRPFLDNKN----MKPGD--------K----LFDNINRAIRNCK   76 (192)
Q Consensus        20 ~ydVFIS---y~~~D~~~~fv~~L~~~L~~~----gi~vf~D~~~----l~~G~--------~----~~~~i~~aI~~S~   76 (192)
                      ++.||+.   |+..+  ..+...+.++|++.    |..+|.-.++    ...+.        .    +...=.++|++|+
T Consensus         2 ~k~IYlAgP~F~~~q--~~~~~~~~~~L~~~~~~~~~~vf~P~~~~~~~~~~~~~~~~~~~~~~a~~If~~D~~~i~~aD   79 (156)
T d1f8ya_           2 KKTIYFGAGWFTDRQ--NKAYKEAMEALKENPTIDLENSYVPLDNQYKGIRVDEHPEYLHDKVWATATYNNDLNGIKTND   79 (156)
T ss_dssp             CBCEEEECCCSSHHH--HHHHHHHHHHHHHCTTBCCTTSBCGGGCSGGGCCTTTCGGGGGCHHHHHHHHHHHHHHHHTSS
T ss_pred             CceEEEECCCCCHHH--HHHHHHHHHHHHhccccCCceEeCCccccccccccccccccccchHHHHHHHHHHHHHHHHCC
Confidence            4557776   33233  45788999999874    6667652211    11111        1    3333467899999


Q ss_pred             eeEEEecCCCCCchhHHHHHHHHHhhcCceeeEEee
Q 044205           77 VGVAVFSPTYCQSYFCLHELALMMETKKKVIPIFCD  112 (192)
Q Consensus        77 ~~Ivv~S~~y~~S~wc~~EL~~~~~~~~~ViPVf~~  112 (192)
                      ++|+++..... +.=+..|+..+...+++|+-+.-+
T Consensus        80 ~via~ldg~~~-D~Gta~EiG~A~a~gKpvi~~~~~  114 (156)
T d1f8ya_          80 IMLGVYIPDEE-DVGLGMELGYALSQGKYVLLVIPD  114 (156)
T ss_dssp             EEEEECCGGGC-CHHHHHHHHHHHHTTCEEEEEECG
T ss_pred             EEEEEeCCCCC-CCCHHHHHHHHHHcCCcEEEEecC
Confidence            99999986544 345788999999999988776554

>d1qe0a1 c.51.1.1 (A:326-420) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=83.63  E-value=1.9  Score=27.48  Aligned_cols=61  Identities=21%  Similarity=0.186  Sum_probs=44.5

Q ss_pred             CCccEEEecccccCchhHHHHHHHHHhcCCCeeEEeCCCCCCCCchHHHHHHHHHhcceeEEEecC
Q 044205           19 KPCDVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVFSP   84 (192)
Q Consensus        19 ~~ydVFISy~~~D~~~~fv~~L~~~L~~~gi~vf~D~~~l~~G~~~~~~i~~aI~~S~~~Ivv~S~   84 (192)
                      ...||||.--+++. ...+..|...|.+.|++|-+|..    +..+...+..|=..---+++|+.+
T Consensus         3 ~~~dv~ii~~~~~~-~~~a~~i~~~Lr~~gi~v~~d~~----~~~l~kq~~~A~~~~~~~~iiiG~   63 (95)
T d1qe0a1           3 ENLDLFIVTMGDQA-DRYAVKLLNHLRHNGIKADKDYL----QRKIKGQMKQADRLGAKFTIVIGD   63 (95)
T ss_dssp             CCCSEEEEECHHHH-HHHHHHHHHHHHTTTCCEEECCS----CCCHHHHHHHHHHTTCSEEEEECH
T ss_pred             CCCeEEEEEeCHHH-HHHHHHHHHHHHHCCCcEEecCC----CCCHHHHHHHHHhcCCCEEEEEcc
Confidence            46799998765553 46788999999999999999853    446777777776655555666543

>d1qf6a1 c.51.1.1 (A:533-642) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Threonyl-tRNA synthetase (ThrRS), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=82.62  E-value=3.5  Score=26.97  Aligned_cols=61  Identities=20%  Similarity=0.114  Sum_probs=40.7

Q ss_pred             CccEEEecccccCchhHHHHHHHHHhcCCCeeEEeCCCCCCCCchHHHHHHHHHhcceeEEEecCC
Q 044205           20 PCDVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVFSPT   85 (192)
Q Consensus        20 ~ydVFISy~~~D~~~~fv~~L~~~L~~~gi~vf~D~~~l~~G~~~~~~i~~aI~~S~~~Ivv~S~~   85 (192)
                      .++|.|--=+++ ...++..|...|...||++.+|.++    ..+...+.+|-..---.++|+.++
T Consensus         7 P~Qv~iipi~~~-~~~~a~~i~~~Lr~~gi~v~~d~~~----~~l~~ki~~a~~~g~p~~iiiG~~   67 (110)
T d1qf6a1           7 PVQVVIMNITDS-QSEYVNELTQKLSNAGIRVKADLRN----EKIGFKIREHTLRRVPYMLVCGDK   67 (110)
T ss_dssp             SSCEEEEESSHH-HHHHHHHHHHHHHTTTCCEEEECCS----SCHHHHHHHHHHTTCSEEEEECTT
T ss_pred             CceEEEEeccHH-HHHHHHHHHHHHHHhhccccccCCc----cchhHHHHHHHHcCCCEEEEECch
Confidence            466766543333 3468999999999999999999754    345556666555444455555554

>d1nyra1 c.51.1.1 (A:533-645) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Threonyl-tRNA synthetase (ThrRS), C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=82.17  E-value=0.93  Score=30.22  Aligned_cols=61  Identities=25%  Similarity=0.164  Sum_probs=38.1

Q ss_pred             CccEEEecccccCchhHHHHHHHHHhcCCCeeEEeCCCCCCCCchHHHHHHHHHhcceeEEEecC
Q 044205           20 PCDVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVFSP   84 (192)
Q Consensus        20 ~ydVFISy~~~D~~~~fv~~L~~~L~~~gi~vf~D~~~l~~G~~~~~~i~~aI~~S~~~Ivv~S~   84 (192)
                      .++|-|---+.|....++..|++.|.+.||++.+|..+-.    +...+..|-..---.++++.+
T Consensus        13 P~qv~iipi~~~~~~~~a~~l~~~Lr~~gi~v~~D~~~~~----~g~k~~~a~~~g~p~~iiiG~   73 (113)
T d1nyra1          13 PKQVQIIPVNVDLHYDYARQLQDELKSQGVRVSIDDRNEK----MGYKIREAQMQKIPYQIVVGD   73 (113)
T ss_dssp             SSCEEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCSSCC----HHHHHHHHHHHTCSEEEEECH
T ss_pred             CceEEEEEeCcHHHhhhHHHHHHHhhhhccceeecccccc----cchHHHHHHHhCceEEEEEcc
Confidence            4456554333343345899999999999999999976544    444555544443335555543

>d1kmma1 c.51.1.1 (A:326-424) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=80.91  E-value=2.7  Score=26.97  Aligned_cols=60  Identities=18%  Similarity=0.253  Sum_probs=42.8

Q ss_pred             CCccEEEecccccCchhHHHHHHHHHhcC--CCeeEEeCCCCCCCCchHHHHHHHHHhcceeEEEec
Q 044205           19 KPCDVFINHRGIDTKRKVATLLYDHLSRL--NLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVFS   83 (192)
Q Consensus        19 ~~ydVFISy~~~D~~~~fv~~L~~~L~~~--gi~vf~D~~~l~~G~~~~~~i~~aI~~S~~~Ivv~S   83 (192)
                      ...||||-.-+++. ...+..|...|++.  |+++.+|..    +..+...+..|-..---.++|+-
T Consensus         2 p~vdv~vi~~~~~~-~~~a~~la~~LR~~~~gi~v~~~~~----~~~l~kq~k~A~~~~~~~~iiiG   63 (99)
T d1kmma1           2 PVVDIYLVASGADT-QSAAMALAERLRDELPGVKLMTNHG----GGNFKKQFARADKWGARVAVVLG   63 (99)
T ss_dssp             CSCSEEEECCSTTH-HHHHHHHHHHHHHHSTTCCEEECCS----CCCHHHHHHHHHHHTCSEEEECC
T ss_pred             CCCEEEEEECCHHH-HHHHHHHHHHHHhcCCCeEEEEeCC----CCCHHHHHHHHHHhCCChhhhcC
Confidence            36789998876654 46788999999876  999999853    44677777776665444555543