Citrus Sinensis ID: 044216

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150----
Protein Sequence
MAFSKDIPSLVLFCLMGLALALPSRAQDFPQDYVNAHNAARAQVGVNPVKWDESIAAFARSYASQQIASCNLNLAGSSGNLSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKFRCNYGGTSIGCNYASPGNVVGVKPY
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccEEEEEEEEcccccEEEEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccHHcccccccccHHHHHHHHHHHHHcccccccccccccEEEEEEEEEEEccEEEEEEEEEEccccEEEEEEccccccccccccc
Coil and Loop (DISEMBL)
mafskdipSLVLFCLMGLALalpsraqdfpqdYVNAHNAARaqvgvnpvkwdESIAAFARSYASQQIASCNlnlagssgnlsgadVVGLWVSekadydynsnscnagkvcgHYTHVVWRNSVRIGCAKfrcnyggtsigcnyaspgnvvgvkpy
Flexible Loop (DISEMBL)
MAFSKDIPSLVLFCLMGLALALPSRAQDFPQDYVNAHNAARAQVGVNPVKWDESIAAFARSYASQQIASCNLNLAGSSGNLSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKFRCNYGgtsigcnyaspgnvvgvkpy
Low Complexity Region (SEG)
MAFSKDIPSLVLFCLMGLALALPSRAQDFPQDYVNAHNAARAQVGVNPVKWDESIAAFARSYASQQIASCNLNLAGSSGNLSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKFRCNYGGTSIGCNYASPGNVVGVKPY
Disordered region (IsUnstruct)
******IPSLVLFCLMGLALALPSRAQDFPQDYVNAHNAARAQVGVNPVKWDESIAAFARSYASQQIASCNLNLAGSSGNLSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKFRCNYGGTSIGCNYASPGNVV*****
Disordered Region (DISOPRED)
*****DIPSLVLFCLMGLALALPSRAQDFPQDYVNAHNAARAQVGVNPVKWDESIAAFARSYASQQIASCNLNLAGSSGNLSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKFRCNYGGTSIGCNYASPGNVVGVKPY
Disordered Region (DISEMBL)
MAFSKDIPSLVLFCLMGLALALPSRAQDFPQDYVNAHNAARAQVGVNPVKWDESIAAFARSYASQQIASCNLNLAGSSGNLSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKFRCNYGGTSIGCNYASPGNVVGVKPY
Disordered Region (DISPRO)
***SKDIPSLVLFCLMGLALALPSRAQDFPQDYVNAHNAARAQVGVNPVKWDESIAAFARSYASQQIASCNLNLAGSSGNLSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKFRCNYGGTSIGCNYASPGNVVG****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAFSKDIPSLVLFCLMGLALALPSRAQDFPQDYVNAHNAARAQVGVNPVKWDESIAAFARSYASQQIASCNLNLAGSSGNLSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKFRCNYGGTSIGCNYASPGNVVGVKPY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	154	2.2.26 [Sep-21-2011]
P33154	161	Pathogenesis-related prot	no	no	0.987	0.944	0.552	2e-43
P07053	168	Pathogenesis-related prot	N/A	no	0.980	0.898	0.506	6e-40
P09042	168	Pathogenesis-related prot	N/A	no	0.941	0.863	0.516	6e-39
Q04108	159	Pathogenesis-related leaf	N/A	no	0.948	0.918	0.522	9e-39
Q41359	167	Pathogenesis-related prot	N/A	no	0.850	0.784	0.570	1e-38
P08299	168	Pathogenesis-related prot	N/A	no	0.844	0.773	0.542	6e-38
P11670	177	Basic form of pathogenesi	N/A	no	0.941	0.819	0.5	8e-38
P04284	159	Pathogenesis-related leaf	N/A	no	0.948	0.918	0.503	1e-36
Q08697	175	Pathogenesis-related prot	N/A	no	0.915	0.805	0.466	4e-34
Q05968	164	Pathogenesis-related prot	N/A	no	0.850	0.798	0.510	3e-33

>sp|P33154|PR1_ARATH Pathogenesis-related protein 1 OS=Arabidopsis thaliana GN=At2g14610 PE=1 SV=1

 Score =  174 bits (441), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 90/163 (55%), Positives = 108/163 (66%), Gaps = 11/163 (6%)

Query: 1   MAFSKDIPSLVLFCLMGLALALPSRAQDFPQDYVNAHNAARAQVGVNPVKWDESIAAFAR 60
           M F+     L++F  +  AL LPS+AQD PQDY+  HN AR  VGV P++WDE +AA+AR
Sbjct: 1   MNFTGYSRFLIVFVALVGALVLPSKAQDSPQDYLRVHNQARGAVGVGPMQWDERVAAYAR 60

Query: 61  SYASQQIASCNL---------NLAGSSGNLSGADVVGLWVSEKADYDYNSNSCNAGKVCG 111
           SYA Q   +C L         NLA  SG+LSG   V +WVSEKA+Y+Y +N+CN   VCG
Sbjct: 61  SYAEQLRGNCRLIHSGGPYGENLAWGSGDLSGVSAVNMWVSEKANYNYAANTCNG--VCG 118

Query: 112 HYTHVVWRNSVRIGCAKFRCNYGGTSIGCNYASPGNVVGVKPY 154
           HYT VVWR SVR+GCAK RCN GGT I CNY   GN V  KPY
Sbjct: 119 HYTQVVWRKSVRLGCAKVRCNNGGTIISCNYDPRGNYVNEKPY 161

Partially responsible for acquired pathogen resistance.
Arabidopsis thaliana (taxid: 3702)

>sp|P07053|PR1B_TOBAC Pathogenesis-related protein 1B OS=Nicotiana tabacum PE=2 SV=1

 Score =  162 bits (411), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 83/164 (50%), Positives = 109/164 (66%), Gaps = 13/164 (7%)

Query: 3   FSKDIPSLVLF--CLMGLALALPSRAQDFPQDYVNAHNAARAQVGVNPVKWDESIAAFAR 60
           FS+ +PS  L    L+ L ++  S AQ+  QDY++AHN ARA VGV P+ WD  +AA+A+
Sbjct: 6   FSQ-MPSFFLVSTLLLFLIISHSSHAQNSQQDYLDAHNTARADVGVEPLTWDNGVAAYAQ 64

Query: 61  SYASQQIASCNL---------NLAGSSGN-LSGADVVGLWVSEKADYDYNSNSCNAGKVC 110
           +Y SQ  A CNL         NLA  SG+ ++ A  V +WV EK  YD++SN+C  G+VC
Sbjct: 65  NYVSQLAADCNLVHSHGQYGENLAQGSGDFMTAAKAVEMWVDEKQYYDHDSNTCAQGQVC 124

Query: 111 GHYTHVVWRNSVRIGCAKFRCNYGGTSIGCNYASPGNVVGVKPY 154
           GHYT VVWRNSVR+GCA+ +CN GG  + CNY  PGNV+G  PY
Sbjct: 125 GHYTQVVWRNSVRVGCARVKCNNGGYVVSCNYDPPGNVIGQSPY 168

Probably involved in the defense reaction of plants against pathogens.

Nicotiana tabacum (taxid: 4097)

>sp|P09042|PR1C_TOBAC Pathogenesis-related protein 1C OS=Nicotiana tabacum PE=2 SV=3

 Score =  159 bits (402), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 80/155 (51%), Positives = 105/155 (67%), Gaps = 10/155 (6%)

Query: 10  LVLFCLMGLALALPSRAQDFPQDYVNAHNAARAQVGVNPVKWDESIAAFARSYASQQIAS 69
           LV   L+ L ++    AQ+  QDY++AHN ARA VGV P+ WD+ +AA+A++YASQ  A 
Sbjct: 14  LVSTLLLFLIISHSCHAQNSQQDYLDAHNTARADVGVEPLTWDDQVAAYAQNYASQLAAD 73

Query: 70  CNL---------NLAGSSGN-LSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWR 119
           CNL         NLA  SG+ L+ A  V +WV+EK  Y ++SN+C  G+VCGHYT VVWR
Sbjct: 74  CNLVHSHGQYGENLAWGSGDFLTAAKAVEMWVNEKQYYAHDSNTCAQGQVCGHYTQVVWR 133

Query: 120 NSVRIGCAKFRCNYGGTSIGCNYASPGNVVGVKPY 154
           NSVR+GCA+ +CN GG  + CNY  PGNV+G  PY
Sbjct: 134 NSVRVGCARVQCNNGGYIVSCNYDPPGNVIGKSPY 168

Probably involved in the defense reaction of plants against pathogens.

Nicotiana tabacum (taxid: 4097)

>sp|Q04108|PR04_SOLLC Pathogenesis-related leaf protein 4 OS=Solanum lycopersicum PE=2 SV=1

 Score =  159 bits (401), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 80/153 (52%), Positives = 101/153 (66%), Gaps = 7/153 (4%)

Query: 9   SLVLFCLMGLALALPSRAQDFPQDYVNAHNAARAQVGVNPVKWDESIAAFARSYASQQIA 68
           SL+L CLM LA+     AQ+ PQDY+  HN ARAQVGV P+ WD ++A+ A++YA+ +  
Sbjct: 7   SLLLTCLMVLAIFHSCEAQNSPQDYLAVHNDARAQVGVGPMSWDANLASRAQNYANSRAG 66

Query: 69  SCNL-------NLAGSSGNLSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNS 121
            CNL       NLA   G+ +G   V LWVSE+ DY+Y +N C  GK+CGHYT VVWRNS
Sbjct: 67  DCNLIHSGAGENLAKGGGDFTGRAAVQLWVSERPDYNYATNQCVGGKMCGHYTQVVWRNS 126

Query: 122 VRIGCAKFRCNYGGTSIGCNYASPGNVVGVKPY 154
           VR+GC + RCN G   I CNY   GN VG +PY
Sbjct: 127 VRLGCGRARCNNGWWFISCNYDPVGNWVGERPY 159

Probably involved in the defense reaction of plants against pathogens.

Solanum lycopersicum (taxid: 4081)

>sp|Q41359|PR1_SAMNI Pathogenesis-related protein PR-1 type OS=Sambucus nigra PE=2 SV=1

 Score =  158 bits (400), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 81/142 (57%), Positives = 97/142 (68%), Gaps = 11/142 (7%)

Query: 24  SRAQDFPQDYVNAHNAARAQVGVNPVKWDESIAAFARSYASQQIASCNL----------N 73
           S AQ+ PQDYV+AHNAAR+ V V PV WDES+AAFAR YA  +   C L          N
Sbjct: 26  SVAQNSPQDYVDAHNAARSAVNVGPVTWDESVAAFARQYAQSRAGDCRLVHSGDPRYGEN 85

Query: 74  LAGSSG-NLSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKFRCN 132
           LA  SG  L+G + V +WV+E+ DY+ N+N+C  GKVCGHYT VVWRNSVRIGCA+ RCN
Sbjct: 86  LAFGSGFELTGRNAVDMWVAERNDYNPNTNTCAPGKVCGHYTQVVWRNSVRIGCARVRCN 145

Query: 133 YGGTSIGCNYASPGNVVGVKPY 154
            G   I CNY+ PGN  G +PY
Sbjct: 146 NGAWFITCNYSPPGNYAGQRPY 167

Probably involved in the defense reaction of plants against pathogens.

Sambucus nigra (taxid: 4202)

>sp|P08299|PR1A_TOBAC Pathogenesis-related protein 1A OS=Nicotiana tabacum PE=1 SV=1

 Score =  156 bits (394), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 76/140 (54%), Positives = 97/140 (69%), Gaps = 10/140 (7%)

Query: 25  RAQDFPQDYVNAHNAARAQVGVNPVKWDESIAAFARSYASQQIASCNL---------NLA 75
           RAQ+  QDY++AHN ARA VGV P+ WD+ +AA+A++YASQ  A CNL         NLA
Sbjct: 29  RAQNSQQDYLDAHNTARADVGVEPLTWDDQVAAYAQNYASQLAADCNLVHSHGQYGENLA 88

Query: 76  GSSGN-LSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKFRCNYG 134
             SG+ ++ A  V +WV EK  YD++SN+C  G+VCGHYT VVWRNSVR+GCA+ +CN G
Sbjct: 89  EGSGDFMTAAKAVEMWVDEKQYYDHDSNTCAQGQVCGHYTQVVWRNSVRVGCARVQCNNG 148

Query: 135 GTSIGCNYASPGNVVGVKPY 154
           G  + CNY  PGN  G  PY
Sbjct: 149 GYVVSCNYDPPGNYRGESPY 168

Probably involved in the defense reaction of plants against pathogens.

Nicotiana tabacum (taxid: 4097)

>sp|P11670|PRB1_TOBAC Basic form of pathogenesis-related protein 1 OS=Nicotiana tabacum PE=3 SV=1

 Score =  155 bits (393), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 78/156 (50%), Positives = 103/156 (66%), Gaps = 11/156 (7%)

Query: 9   SLVLFCLMGLALAL-PSRAQDFPQDYVNAHNAARAQVGVNPVKWDESIAAFARSYASQQI 67
           + ++ C +  A+ +  S+AQ+ PQDY+N HNAAR QVGV P+ WD  +AA+A++YA+Q+I
Sbjct: 5   TTIVACFITFAILIHSSKAQNSPQDYLNPHNAARRQVGVGPMTWDNRLAAYAQNYANQRI 64

Query: 68  ASCNL---------NLAGSSGNLSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVW 118
             C +         NLA +   L+ A  V +WV EK  YDYNSNSC  G VCGHYT VVW
Sbjct: 65  GDCGMIHSHGPYGENLAAAFPQLNAAGAVKMWVDEKRFYDYNSNSC-VGGVCGHYTQVVW 123

Query: 119 RNSVRIGCAKFRCNYGGTSIGCNYASPGNVVGVKPY 154
           RNSVR+GCA+ R N G   I CNY  PGN +G +P+
Sbjct: 124 RNSVRLGCARVRSNNGWFFITCNYDPPGNFIGQRPF 159

Probably involved in the defense reaction of plants against pathogens.

Nicotiana tabacum (taxid: 4097)

>sp|P04284|PR06_SOLLC Pathogenesis-related leaf protein 6 OS=Solanum lycopersicum GN=PR1B1 PE=1 SV=2

 Score =  152 bits (383), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 77/153 (50%), Positives = 98/153 (64%), Gaps = 7/153 (4%)

Query: 9   SLVLFCLMGLALALPSRAQDFPQDYVNAHNAARAQVGVNPVKWDESIAAFARSYASQQIA 68
           SL+L CLM LA+     AQ+ PQDY+  HN ARAQVGV P+ WD ++A+ A++YA+ +  
Sbjct: 7   SLLLTCLMVLAIFHSCEAQNSPQDYLAVHNDARAQVGVGPMSWDANLASRAQNYANSRAG 66

Query: 69  SCNL-------NLAGSSGNLSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNS 121
            CNL       NLA   G+ +G   V LWVSE+  Y+Y +N C  GK C HYT VVWRNS
Sbjct: 67  DCNLIHSGAGENLAKGGGDFTGRAAVQLWVSERPSYNYATNQCVGGKKCRHYTQVVWRNS 126

Query: 122 VRIGCAKFRCNYGGTSIGCNYASPGNVVGVKPY 154
           VR+GC + RCN G   I CNY   GN +G +PY
Sbjct: 127 VRLGCGRARCNNGWWFISCNYDPVGNWIGQRPY 159

Probably involved in the defense reaction of plants against pathogens. Has antifungal activity.

Solanum lycopersicum (taxid: 4081)

>sp|Q08697|PR1A_SOLLC Pathogenesis-related protein 1A1 OS=Solanum lycopersicum PE=2 SV=1

 Score =  143 bits (361), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 70/150 (46%), Positives = 96/150 (64%), Gaps = 9/150 (6%)

Query: 9   SLVLFCLMGLALALPSRAQDFPQDYVNAHNAARAQVGVNPVKWDESIAAFARSYASQQIA 68
           S+ + C +   +   S+AQ   ++++NAHNAAR +VGV P+ WD+ +AA+A++YA+Q+  
Sbjct: 4   SIFVACFITFIIFHSSQAQTPRENFLNAHNAARRRVGVGPMTWDDGLAAYAQNYANQRAD 63

Query: 69  SCNL---------NLAGSSGNLSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWR 119
            C +         NLA +   L+ A  V +W  EK  YDYNSN+C  GKVCGHYT VVWR
Sbjct: 64  DCGMIHSDGPYGENLAAAFPQLNAAGAVKMWDDEKQWYDYNSNTCAPGKVCGHYTQVVWR 123

Query: 120 NSVRIGCAKFRCNYGGTSIGCNYASPGNVV 149
            SVR+GCA+ RCN G   I CNY  PGN +
Sbjct: 124 KSVRLGCARVRCNSGWVFITCNYDPPGNYI 153

Probably involved in the defense reaction of plants against pathogens.

Solanum lycopersicum (taxid: 4081)

>sp|Q05968|PR1_HORVU Pathogenesis-related protein 1 OS=Hordeum vulgare PE=2 SV=1

 Score =  140 bits (352), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 73/143 (51%), Positives = 90/143 (62%), Gaps = 12/143 (8%)

Query: 24  SRAQDFPQDYVNAHNAARAQVGVNPVKWDESIAAFARSYASQQIASCNLNLAG------- 76
           S+AQ+ PQDYV+ HNAAR+ VGV  V W   + AFA++YA+Q+I  C L  +G       
Sbjct: 22  SQAQNSPQDYVSPHNAARSAVGVGAVSWSTKLQAFAQNYANQRINDCKLQHSGGPYGENI 81

Query: 77  ----SSGNLSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKFRCN 132
               +  +   +D V  WVSEK DYDY SN+C AGKVCGHYT VVWR S  IGCA+  CN
Sbjct: 82  FWGSAGADWKASDAVNSWVSEKKDYDYGSNTCAAGKVCGHYTQVVWRASTSIGCARVVCN 141

Query: 133 YG-GTSIGCNYASPGNVVGVKPY 154
              G  I CNY   GN++G KPY
Sbjct: 142 NNRGVFITCNYEPRGNIIGQKPY 164

Probably involved in the defense reaction of plants against pathogens.

Hordeum vulgare (taxid: 4513)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	154
224150051	161	predicted protein [Populus trichocarpa]	0.948	0.906	0.619	9e-49
224105795	161	predicted protein [Populus trichocarpa]	0.948	0.906	0.619	1e-48
224105801	161	predicted protein [Populus trichocarpa]	0.948	0.906	0.612	1e-48
224100397	161	predicted protein [Populus trichocarpa]	0.948	0.906	0.612	2e-48
389620134	165	pathogenesis related protein 1 isoform 1	1.0	0.933	0.581	9e-46
359744024	161	pathogensis-related protein 1a, partial	0.987	0.944	0.576	3e-45
255562124	162	STS14 protein precursor, putative [Ricin	0.954	0.907	0.551	4e-45
388540036	153	pathogenesis related protein 1a, partial	0.928	0.934	0.585	4e-45
392507623	154	pathogenesis related protein 1a, partial	0.941	0.941	0.584	5e-45
83853951	161	pathogenesis-related protein 1a [Malus x	0.948	0.906	0.574	6e-45

>gi|224150051|ref|XP_002336902.1| predicted protein [Populus trichocarpa] gi|222837091|gb|EEE75470.1| predicted protein [Populus trichocarpa]

 Score =  197 bits (502), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 96/155 (61%), Positives = 115/155 (74%), Gaps = 9/155 (5%)

Query: 9   SLVLFCLMGLALALPSRAQDFPQDYVNAHNAARAQVGVNPVKWDESIAAFARSYASQQIA 68
           SL  F L+ L+L LPSRAQD PQDY++AHNAARA VGV P+ WD ++ A+A++YA+Q+  
Sbjct: 7   SLAFFTLITLSLILPSRAQDNPQDYLDAHNAARAAVGVGPLTWDTTVQAYAQNYANQRAG 66

Query: 69  SCNL---------NLAGSSGNLSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWR 119
            CNL         N+A SS +LSGAD V +WV EKA YDYNSNSC AG+ CGHYT VVWR
Sbjct: 67  DCNLVHSGGPYGENIAWSSADLSGADAVKMWVDEKAYYDYNSNSCAAGQQCGHYTQVVWR 126

Query: 120 NSVRIGCAKFRCNYGGTSIGCNYASPGNVVGVKPY 154
           NS R+GCAK +C+ GGT IGCNY  PGN VG KPY
Sbjct: 127 NSARLGCAKVKCSTGGTFIGCNYDPPGNYVGQKPY 161

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105795|ref|XP_002313934.1| predicted protein [Populus trichocarpa] gi|222850342|gb|EEE87889.1| predicted protein [Populus trichocarpa]

 Score =  197 bits (501), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 96/155 (61%), Positives = 114/155 (73%), Gaps = 9/155 (5%)

Query: 9   SLVLFCLMGLALALPSRAQDFPQDYVNAHNAARAQVGVNPVKWDESIAAFARSYASQQIA 68
           SL  F L+ L+L LPSRAQD PQDY++AHNAARA VGV P+ WD ++ A+A++YA+Q+  
Sbjct: 7   SLAFFTLITLSLILPSRAQDNPQDYLDAHNAARAAVGVGPLTWDTTVQAYAQNYANQRAG 66

Query: 69  SCNL---------NLAGSSGNLSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWR 119
            CNL         NLA SS +LSG D V +WV EKA YDYNSNSC AG+ CGHYT VVWR
Sbjct: 67  DCNLIHSGGPYGENLAWSSADLSGTDAVKMWVDEKAYYDYNSNSCAAGQQCGHYTQVVWR 126

Query: 120 NSVRIGCAKFRCNYGGTSIGCNYASPGNVVGVKPY 154
           NS R+GCAK +C+ GGT IGCNY  PGN VG KPY
Sbjct: 127 NSARLGCAKVKCSTGGTFIGCNYDPPGNYVGQKPY 161

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105801|ref|XP_002313935.1| predicted protein [Populus trichocarpa] gi|222850343|gb|EEE87890.1| predicted protein [Populus trichocarpa]

 Score =  197 bits (501), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 95/155 (61%), Positives = 114/155 (73%), Gaps = 9/155 (5%)

Query: 9   SLVLFCLMGLALALPSRAQDFPQDYVNAHNAARAQVGVNPVKWDESIAAFARSYASQQIA 68
           SL  F L+ L+L LPSRAQD PQDY++AHN ARA VGV P+ WD ++ A+A++YA+Q+  
Sbjct: 7   SLAFFTLITLSLILPSRAQDNPQDYLDAHNTARAAVGVGPLTWDTTVQAYAQNYANQRAG 66

Query: 69  SCNL---------NLAGSSGNLSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWR 119
            CNL         N+A SS +LSG D V +WV EKA YDYNSNSC AG+ CGHYT VVWR
Sbjct: 67  DCNLIHSGGPYGENIAWSSADLSGTDAVKMWVDEKAYYDYNSNSCAAGQQCGHYTQVVWR 126

Query: 120 NSVRIGCAKFRCNYGGTSIGCNYASPGNVVGVKPY 154
           NS R+GCAK +C+ GGT IGCNY  PGNVVG KPY
Sbjct: 127 NSARLGCAKVKCSTGGTFIGCNYDPPGNVVGQKPY 161

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100397|ref|XP_002334377.1| predicted protein [Populus trichocarpa] gi|118485875|gb|ABK94784.1| unknown [Populus trichocarpa] gi|118488561|gb|ABK96093.1| unknown [Populus trichocarpa] gi|222871723|gb|EEF08854.1| predicted protein [Populus trichocarpa]

 Score =  196 bits (499), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 95/155 (61%), Positives = 114/155 (73%), Gaps = 9/155 (5%)

Query: 9   SLVLFCLMGLALALPSRAQDFPQDYVNAHNAARAQVGVNPVKWDESIAAFARSYASQQIA 68
           SL  F L+ L+L LPSRAQD PQDY++AHNAARA VGV P+ WD ++ A+A++YA+Q+  
Sbjct: 7   SLAFFTLITLSLILPSRAQDNPQDYLDAHNAARAAVGVGPLTWDTTVQAYAQNYANQRAG 66

Query: 69  SCNL---------NLAGSSGNLSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWR 119
            CNL         N+A SS +LSG D V +WV EKA YDYNSNSC AG+ CGHYT VVWR
Sbjct: 67  DCNLVHSGGPYGENIAWSSADLSGTDAVKMWVDEKAYYDYNSNSCAAGQQCGHYTQVVWR 126

Query: 120 NSVRIGCAKFRCNYGGTSIGCNYASPGNVVGVKPY 154
           NS R+GCAK +C+ GGT IGCNY  PGN VG KPY
Sbjct: 127 NSARLGCAKVKCSTGGTFIGCNYDPPGNYVGQKPY 161

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|389620134|gb|AFK93500.1| pathogenesis related protein 1 isoform 1 [Ficus pumila var. awkeotsang]

 Score =  187 bits (476), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 96/165 (58%), Positives = 118/165 (71%), Gaps = 11/165 (6%)

Query: 1   MAFSKDIPSLVLF-CLM-GLALALPSRAQDFPQDYVNAHNAARAQVGVNPVKWDESIAAF 58
           M   +   SLV F CL+ GLA    S AQD PQD+VNAH++AR +VGV  + WD+++A++
Sbjct: 1   MGSGRRRVSLVAFTCLIIGLATLQASNAQDSPQDFVNAHSSARGEVGVGAITWDDTVASY 60

Query: 59  ARSYASQQIASCNL---------NLAGSSGNLSGADVVGLWVSEKADYDYNSNSCNAGKV 109
           A+ YA+  I  CN+         NLA SSG+LSG D V +WV+EKA+Y+YNSNSC +GKV
Sbjct: 61  AQQYANSHIGDCNMVHSGGPYGENLAWSSGDLSGTDAVRMWVNEKANYNYNSNSCASGKV 120

Query: 110 CGHYTHVVWRNSVRIGCAKFRCNYGGTSIGCNYASPGNVVGVKPY 154
           CGHYT VVWR SVR+GCAK RCN GGT IGCNY  PGN VG KPY
Sbjct: 121 CGHYTQVVWRKSVRLGCAKVRCNNGGTFIGCNYDPPGNYVGQKPY 165

Source: Ficus pumila var. awkeotsang

Species: Ficus pumila

Genus: Ficus

Family: Moraceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359744024|gb|AEV57468.1| pathogensis-related protein 1a, partial [Prunus persica]

 Score =  186 bits (471), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 94/163 (57%), Positives = 113/163 (69%), Gaps = 11/163 (6%)

Query: 1   MAFSKDIPSLVLFCLMGLALALPSRAQDFPQDYVNAHNAARAQVGVNPVKWDESIAAFAR 60
           M  SK   S    CL+GLAL   + AQD PQDY+NAHNAARAQVGV P+ WD ++ A+A+
Sbjct: 1   MGLSK--ISFAFVCLIGLALLQSTGAQDSPQDYLNAHNAARAQVGVAPLTWDPNLVAYAQ 58

Query: 61  SYASQQIASCNL---------NLAGSSGNLSGADVVGLWVSEKADYDYNSNSCNAGKVCG 111
            YA+ +   CNL         N+A S+G+LSG   V L+V EK DYDYNSN+C AGK+CG
Sbjct: 59  RYANSRAGDCNLVHSNGPYGENIAKSTGDLSGTAAVNLFVGEKPDYDYNSNTCAAGKMCG 118

Query: 112 HYTHVVWRNSVRIGCAKFRCNYGGTSIGCNYASPGNVVGVKPY 154
           HYT VVWRNSVR+GCAK RC  GGT IGCNY   GN+ G +PY
Sbjct: 119 HYTQVVWRNSVRLGCAKARCTNGGTFIGCNYDPRGNIRGQRPY 161

Source: Prunus persica

Species: Prunus persica

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562124|ref|XP_002522070.1| STS14 protein precursor, putative [Ricinus communis] gi|223538669|gb|EEF40270.1| STS14 protein precursor, putative [Ricinus communis]

 Score =  186 bits (471), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 86/156 (55%), Positives = 112/156 (71%), Gaps = 9/156 (5%)

Query: 8   PSLVLFCLMGLALALPSRAQDFPQDYVNAHNAARAQVGVNPVKWDESIAAFARSYASQQI 67
           PSL L C++ +AL   S AQD  QDY+NAHN+AR  VG+ P+ WD+ +A++A+ +A+Q  
Sbjct: 6   PSLALVCIISIALIFSSHAQDTQQDYLNAHNSARGDVGLGPLTWDDKVASYAQHHANQHK 65

Query: 68  ASCNL---------NLAGSSGNLSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVW 118
           + C+L         NLA SSG+LSG D V +W+ EK  YDYNSNSC +G++CGHYT VVW
Sbjct: 66  SDCSLVHSEGPYGENLAWSSGDLSGTDAVKMWIDEKPYYDYNSNSCASGQICGHYTQVVW 125

Query: 119 RNSVRIGCAKFRCNYGGTSIGCNYASPGNVVGVKPY 154
           R+SVR+GCAK  CN GGT IGCNY  PGN +G +PY
Sbjct: 126 RSSVRLGCAKVSCNNGGTFIGCNYDPPGNYIGQRPY 161

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388540036|gb|AFK64734.1| pathogenesis related protein 1a, partial [Cydonia oblonga]

 Score =  186 bits (471), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 89/152 (58%), Positives = 109/152 (71%), Gaps = 9/152 (5%)

Query: 12  LFCLMGLALALPSRAQDFPQDYVNAHNAARAQVGVNPVKWDESIAAFARSYASQQIASCN 71
           +   +G  L   S AQD PQDY+N+HNAARA VGV P+ WD+++A +A++YA+Q +  CN
Sbjct: 2   VVVYLGSVLIQSSHAQDAPQDYLNSHNAARAAVGVGPLTWDDNVAGYAQNYANQHVGDCN 61

Query: 72  L---------NLAGSSGNLSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSV 122
           L         NLA S+G++SG   V +WV+EKADYDY SNSC  GKVCGHYT VVWRNS 
Sbjct: 62  LVHSGGPYGENLAMSTGDMSGTAAVDMWVAEKADYDYESNSCADGKVCGHYTQVVWRNSA 121

Query: 123 RIGCAKFRCNYGGTSIGCNYASPGNVVGVKPY 154
           R+GCAK RC+ GGT IGCNY  PGN VG KPY
Sbjct: 122 RVGCAKVRCSSGGTFIGCNYDPPGNYVGQKPY 153

Source: Cydonia oblonga

Species: Cydonia oblonga

Genus: Cydonia

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|392507623|gb|AFM77011.1| pathogenesis related protein 1a, partial [Cydonia oblonga]

 Score =  185 bits (470), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 90/154 (58%), Positives = 109/154 (70%), Gaps = 9/154 (5%)

Query: 10  LVLFCLMGLALALPSRAQDFPQDYVNAHNAARAQVGVNPVKWDESIAAFARSYASQQIAS 69
           L L  ++   L   S AQD PQDY+N+HNAARA VGV P+ WD+ +A +A++YA+Q +  
Sbjct: 1   LGLVVVLCSVLIQSSHAQDTPQDYLNSHNAARAAVGVGPLTWDDKVAGYAQNYANQHVGD 60

Query: 70  CNL---------NLAGSSGNLSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRN 120
           CNL         NLA S+G++SG   V +WV+EKADYDY SNSC  GKVCGHYT VVWRN
Sbjct: 61  CNLVHSGGPYGENLAMSTGDMSGTAAVDMWVAEKADYDYESNSCADGKVCGHYTQVVWRN 120

Query: 121 SVRIGCAKFRCNYGGTSIGCNYASPGNVVGVKPY 154
           S R+GCAK RC+ GGT IGCNY  PGN VG KPY
Sbjct: 121 SARVGCAKVRCSSGGTFIGCNYDPPGNYVGQKPY 154

Source: Cydonia oblonga

Species: Cydonia oblonga

Genus: Cydonia

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|83853951|gb|ABC47922.1| pathogenesis-related protein 1a [Malus x domestica]

 Score =  185 bits (469), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 89/155 (57%), Positives = 108/155 (69%), Gaps = 9/155 (5%)

Query: 9   SLVLFCLMGLALALPSRAQDFPQDYVNAHNAARAQVGVNPVKWDESIAAFARSYASQQIA 68
           SL L  ++G  L   S AQD PQDY+ +HN ARA VGV P+ WD+ +A +A++YA+Q + 
Sbjct: 7   SLALLFILGSVLIQSSHAQDTPQDYLKSHNDARAAVGVGPLTWDDKVAGYAQNYANQHVG 66

Query: 69  SCNL---------NLAGSSGNLSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWR 119
            CNL         NLA S+G++SG   V +WV+EKADY Y SNSC  GKVCGHYT VVWR
Sbjct: 67  DCNLVHSGGPYGENLAMSTGDMSGTAAVDMWVAEKADYSYESNSCADGKVCGHYTQVVWR 126

Query: 120 NSVRIGCAKFRCNYGGTSIGCNYASPGNVVGVKPY 154
           NS R+GCAK RC+ GGT IGCNY  PGN VG KPY
Sbjct: 127 NSARVGCAKVRCSSGGTFIGCNYDPPGNYVGQKPY 161

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	154
TAIR|locus:2055240	161	PRB1 "AT2G14580" [Arabidopsis	0.922	0.881	0.577	5e-44
TAIR|locus:2064294	161	PR1 "AT2G14610" [Arabidopsis t	0.922	0.881	0.577	9.3e-43
TAIR|locus:2134178	163	AT4G33720 "AT4G33720" [Arabido	0.948	0.895	0.516	7.8e-39
TAIR|locus:2180662	166	AT5G26130 "AT5G26130" [Arabido	1.0	0.927	0.493	4.9e-37
TAIR|locus:2091196	161	AT3G19690 "AT3G19690" [Arabido	0.928	0.888	0.490	1.7e-36
TAIR|locus:2134283	166	AT4G33710 "AT4G33710" [Arabido	0.948	0.879	0.5	5.7e-36
TAIR|locus:2031055	161	AT1G50060 "AT1G50060" [Arabido	0.941	0.900	0.490	2.5e-33
TAIR|locus:2134193	172	AT4G33730 "AT4G33730" [Arabido	0.831	0.744	0.468	6.9e-31
TAIR|locus:2031060	226	AT1G50050 "AT1G50050" [Arabido	0.863	0.588	0.458	2.7e-29
TAIR|locus:2005537	176	PR-1-LIKE "AT2G19990" [Arabido	0.811	0.710	0.444	1.2e-28

TAIR|locus:2055240 PRB1 "AT2G14580" [Arabidopsis thaliana (taxid:3702)]

 Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
 Identities = 89/154 (57%), Positives = 110/154 (71%)

Query:    10 LVLFCLMGLALALPSRAQDFPQDYVNAHNAARAQVGVNPVKWDESIAAFARSYASQQIAS 69
             ++L  L+G AL +P +AQD  QDYVNAHN AR+Q+GV P++WDE +AA+AR+YA+Q    
Sbjct:    11 IILAALVG-ALVVPLKAQDSQQDYVNAHNQARSQIGVGPMQWDEGLAAYARNYANQLKGD 69

Query:    70 CNL---------NLAGSSGNLSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRN 120
             C L         NLA S G+LSG   V LWV+EKA+Y+Y++N+CN   VCGHYT VVWRN
Sbjct:    70 CRLVHSRGPYGENLAKSGGDLSGVAAVNLWVNEKANYNYDTNTCNG--VCGHYTQVVWRN 127

Query:   121 SVRIGCAKFRCNYGGTSIGCNYASPGNVVGVKPY 154
             SVR+GCAK RCN GGT I CNY  PGN    KPY
Sbjct:   128 SVRLGCAKVRCNNGGTIISCNYDPPGNYANQKPY 161

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;IEA;ISS

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

TAIR|locus:2064294 PR1 "AT2G14610" [Arabidopsis thaliana (taxid:3702)]

 Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
 Identities = 89/154 (57%), Positives = 105/154 (68%)

Query:    10 LVLFCLMGLALALPSRAQDFPQDYVNAHNAARAQVGVNPVKWDESIAAFARSYASQQIAS 69
             +V   L+G AL LPS+AQD PQDY+  HN AR  VGV P++WDE +AA+ARSYA Q   +
Sbjct:    11 IVFVALVG-ALVLPSKAQDSPQDYLRVHNQARGAVGVGPMQWDERVAAYARSYAEQLRGN 69

Query:    70 CNL---------NLAGSSGNLSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRN 120
             C L         NLA  SG+LSG   V +WVSEKA+Y+Y +N+CN   VCGHYT VVWR 
Sbjct:    70 CRLIHSGGPYGENLAWGSGDLSGVSAVNMWVSEKANYNYAANTCNG--VCGHYTQVVWRK 127

Query:   121 SVRIGCAKFRCNYGGTSIGCNYASPGNVVGVKPY 154
             SVR+GCAK RCN GGT I CNY   GN V  KPY
Sbjct:   128 SVRLGCAKVRCNNGGTIISCNYDPRGNYVNEKPY 161

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;ISS

GO:0009627 "systemic acquired resistance" evidence=IEP;RCA

GO:0005618 "cell wall" evidence=IDA

GO:0010266 "response to vitamin B1" evidence=IEP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0009414 "response to water deprivation" evidence=IEP

GO:0006952 "defense response" evidence=TAS

TAIR|locus:2134178 AT4G33720 "AT4G33720" [Arabidopsis thaliana (taxid:3702)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 80/155 (51%), Positives = 103/155 (66%)

Query:     9 SLVLFCLMGLALALPSRAQDFPQDYVNAHNAARAQVGVNPVKWDESIAAFARSYASQQIA 68
             +L L     L L +  +AQD PQD++  HN ARA+VGV P++WDE +AA+AR+YA+Q+  
Sbjct:     9 NLFLAITFFLVLIVHLKAQDSPQDFLAVHNRARAEVGVGPLRWDEKVAAYARNYANQRKG 68

Query:    69 SCNL---------NLAGSSGNLSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWR 119
              C +         N+A SSG+++G   V +WV E+ DYDY+SN+C   K CGHYT VVWR
Sbjct:    69 DCAMKHSSGSYGENIAWSSGSMTGVAAVDMWVDEQFDYDYDSNTCAWDKQCGHYTQVVWR 128

Query:   120 NSVRIGCAKFRCNYGGTSIGCNYASPGNVVGVKPY 154
             NS R+GCAK RCN G T I CNY  PGN VG  PY
Sbjct:   129 NSERLGCAKVRCNNGQTFITCNYDPPGNWVGEWPY 163

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2180662 AT5G26130 "AT5G26130" [Arabidopsis thaliana (taxid:3702)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 82/166 (49%), Positives = 104/166 (62%)

Query:     1 MAFSKDIPSLVLFCL-MGLALALPSRAQDFPQDYVNAHNAARAQVGVNPVKWDESIAAFA 59
             M   K   +L+L  + + LA A+P +AQD PQDY++ HN AR QVGV P+KW      +A
Sbjct:     1 MKMFKSPQTLILSVIVLFLAFAVPLKAQDQPQDYLDEHNRARTQVGVPPMKWHAGAEQYA 60

Query:    60 RSYASQQIASCNL-----------NLAGSSGNLSGADVVGLWVSEKADYDYNSNSCNAGK 108
              +YA Q+   C+L           NLA S G LSGA+ V LWV+EK+DY Y SN+C+ GK
Sbjct:    61 WNYAQQRKGDCSLTHSNSNGLYGENLAWSGGALSGAEAVKLWVNEKSDYIYASNTCSDGK 120

Query:   109 VCGHYTHVVWRNSVRIGCAKFRCNYGGTSIGCNYASPGNVVGVKPY 154
              CGHYT VVWR S  +GCAK +C+ GGT + CNY  PGN  G  PY
Sbjct:   121 QCGHYTQVVWRTSEWVGCAKVKCDNGGTFVTCNYYPPGNYRGRWPY 166

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2091196 AT3G19690 "AT3G19690" [Arabidopsis thaliana (taxid:3702)]

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 76/155 (49%), Positives = 103/155 (66%)

Query:    11 VLFCLMGLALALPSRAQDFPQDYVNAHNAARAQVGVNPVKWDESIAAFARSYASQQIASC 70
             +LF L+ +AL   S A+D  Q ++ AHN AR +VG++P+ WD+ +AA+A SYA+Q+I  C
Sbjct:     8 ILF-LLAIALFYGSLAEDLQQQFLEAHNEARNEVGLDPLVWDDEVAAYAASYANQRINDC 66

Query:    71 NL---------NLAGSSGNLSGADVVGLWVSEKADYDYNSNSCNA--GKVCGHYTHVVWR 119
              L         N+A SSG +S  D   +W++EK  YDY+SN+CN   G  C HYT VVW+
Sbjct:    67 ALVHSNGPFGENIAMSSGEMSAEDAAEMWINEKQYYDYDSNTCNDPNGGTCLHYTQVVWK 126

Query:   120 NSVRIGCAKFRCNYGGTSIGCNYASPGNVVGVKPY 154
             N+VR+GCAK  CN GGT I CNY  PGN +G KP+
Sbjct:   127 NTVRLGCAKVVCNSGGTFITCNYDPPGNYIGEKPF 161

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2134283 AT4G33710 "AT4G33710" [Arabidopsis thaliana (taxid:3702)]

 Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
 Identities = 79/158 (50%), Positives = 102/158 (64%)

Query:     9 SLVLFCL-MGLALALPSRAQDFPQDYVNAHNAARAQVGVNPVKWDESIAAFARSYASQQI 67
             +LVL  L + LA A+P +AQD  QDY++ HN AR  V V  +KW    A +A +YA ++ 
Sbjct:     9 TLVLLALALVLAFAVPLKAQDRRQDYLDVHNHARDDVSVPHIKWHAGAARYAWNYAQRRK 68

Query:    68 ASCNL-----------NLAGSSGNLSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHV 116
               C L           NLA SSG++SGA  V LWV EK+DY + SN+C AGK CGHYT V
Sbjct:    69 RDCRLIHSNSRGRYGENLAWSSGDMSGAAAVRLWVREKSDYFHKSNTCRAGKQCGHYTQV 128

Query:   117 VWRNSVRIGCAKFRCNYGGTSIGCNYASPGNVVGVKPY 154
             VW+NS  +GCAK +C+ GGT + CNY+ PGNV G +PY
Sbjct:   129 VWKNSEWVGCAKVKCDNGGTFVTCNYSHPGNVRGRRPY 166

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2031055 AT1G50060 "AT1G50060" [Arabidopsis thaliana (taxid:3702)]

 Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
 Identities = 77/157 (49%), Positives = 98/157 (62%)

Query:     8 PSLVLFCLMGLALALPSRAQDFPQDYVNAHNAARAQVGVNPVKWDESIAAFARSYASQQI 67
             P LV+  +  L +A  + AQ+ PQDY+N+HN ARAQVGV  V WD ++AA+A +Y++ + 
Sbjct:     7 PFLVIVAISFLVVA--TNAQNTPQDYLNSHNTARAQVGVPNVVWDTTLAAYALNYSNFRK 64

Query:    68 ASCNL---------NLA-GSSGNLSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVV 117
             A CNL         NLA GSS + S    V LWV EK  Y Y  N+C  GK C HYT VV
Sbjct:    65 ADCNLVHSNGPYGENLAKGSSSSFSAISAVKLWVDEKPYYSYAYNNCTGGKQCLHYTQVV 124

Query:   118 WRNSVRIGCAKFRCNYGGTSIGCNYASPGNVVGVKPY 154
             WR+SV+IGCA+ +C      + CNY SPGN VG  PY
Sbjct:   125 WRDSVKIGCARVQCTNTWWFVSCNYNSPGNWVGEYPY 161

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2134193 AT4G33730 "AT4G33730" [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 66/141 (46%), Positives = 89/141 (63%)

Query:    25 RAQDFPQDYVNAHNAARAQVGVNPVKWDESIAAFARSYASQQIAS--CNL---------N 73
             ++ ++P  Y+  HNAARA V V P++WD  IA  A+ YA+  +AS  C+L         N
Sbjct:    34 QSHEYPDSYLRPHNAARAAVKVKPLRWDFGIATVAQDYANH-LASGPCSLEHSSGPYGEN 92

Query:    74 LAGSSGNLSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKFRCNY 133
             LA  SG++S A  V +WV EK+ YD+ SNSC+ G  CGHYT VVWR S R+GC K +CN 
Sbjct:    93 LAFGSGDMSAAQAVAMWVHEKSYYDFYSNSCH-GPACGHYTQVVWRGSARLGCGKAKCNN 151

Query:   134 GGTSIGCNYASPGNVVGVKPY 154
             G + + CNY   GN +G +PY
Sbjct:   152 GASIVVCNYDPAGNYIGARPY 172

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0010054 "trichoblast differentiation" evidence=RCA

TAIR|locus:2031060 AT1G50050 "AT1G50050" [Arabidopsis thaliana (taxid:3702)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 67/146 (45%), Positives = 90/146 (61%)

Query:     8 PSLVLFCLMGLALALPSRAQDFPQDYVNAHNAARAQVGVNPVKWDESIAAFARSYASQQI 67
             P L++  +  L LA  + AQ+  QDY+N HN ARAQVGV  V WD  +AA+A +YA+ + 
Sbjct:     7 PFLIIVAISFLVLA--TNAQNAQQDYLNTHNTARAQVGVANVVWDTVVAAYATNYANARK 64

Query:    68 ASCNL----------NLA-GSSGNLSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHV 116
               C+L          NLA G++   +G   V LWV+EK  Y+Y +N+C   + C HYT V
Sbjct:    65 VDCSLTPSTGGSYGENLANGNNALFTGVAAVNLWVNEKPYYNYTANACIGAQQCKHYTQV 124

Query:   117 VWRNSVRIGCAKFRCNYGGTSIGCNY 142
             VW NSV+IGCA+  CN GG  +GCNY
Sbjct:   125 VWSNSVKIGCARVLCNNGGYFVGCNY 150

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2005537 PR-1-LIKE "AT2G19990" [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 60/135 (44%), Positives = 84/135 (62%)

Query:    30 PQDYVNAHNAARAQVGVNPVKWDESIAAFARSYASQQIASCNL---------NLAGSSGN 80
             PQ+ +  HN ARA VGV P+ W+E++A +A+SYA ++   C +         NLA   G 
Sbjct:    42 PQETLVVHNKARAMVGVGPMVWNETLATYAQSYAHERARDCAMKHSLGPFGENLAAGWGT 101

Query:    81 LSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKFRC-NYGGTSIG 139
             +SG      W++EK +YDY+SN+C    VCGHYT +VWR+SVR+GCA  RC N     + 
Sbjct:   102 MSGPVATEYWMTEKENYDYDSNTCGGDGVCGHYTQIVWRDSVRLGCASVRCKNDEYIWVI 161

Query:   140 CNYASPGNVVGVKPY 154
             C+Y  PGN +G +PY
Sbjct:   162 CSYDPPGNYIGQRPY 176

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;IEA;ISS

GO:0042742 "defense response to bacterium" evidence=IEP

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P09042	PR1C_TOBAC	No assigned EC number	0.5161	0.9415	0.8630	N/A	no
Q04108	PR04_SOLLC	No assigned EC number	0.5228	0.9480	0.9182	N/A	no
P04284	PR06_SOLLC	No assigned EC number	0.5032	0.9480	0.9182	N/A	no
P07053	PR1B_TOBAC	No assigned EC number	0.5060	0.9805	0.8988	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	154
cd05381	136	cd05381, SCP_PR-1_like, SCP_PR-1_like: SCP-like ex	8e-60
cd05384	129	cd05384, SCP_PRY1_like, SCP_PRY1_like: SCP-like ex	3e-29
cd00168	122	cd00168, SCP, SCP: SCP-like extracellular protein	9e-28
smart00198	144	smart00198, SCP, SCP / Tpx-1 / Ag5 / PR-1 / Sc7 fa	1e-26
cd05559	136	cd05559, SCP_HrTT-1, SCP_HrTT-1: SCP-like extracel	9e-25
cd05382	132	cd05382, SCP_GAPR-1_like, SCP_GAPR-1_like: SCP-lik	9e-23
cd05385	144	cd05385, SCP_GLIPR-1_like, SCP_GLIPR-1_like: SCP-l	4e-21
cd05380	144	cd05380, SCP_euk, SCP_euk: SCP-like extracellular	7e-18
pfam00188	121	pfam00188, CAP, Cysteine-rich secretory protein fa	6e-12
cd05383	138	cd05383, SCP_CRISP, SCP_CRISP: SCP-like extracellu	9e-12
COG2340	207	COG2340, COG2340, Uncharacterized protein with SCP	7e-09

>gnl|CDD|240181 cd05381, SCP_PR-1_like, SCP_PR-1_like: SCP-like extracellular protein domain, PR-1 like subfamily

 Score =  181 bits (461), Expect = 8e-60
 Identities = 77/136 (56%), Positives = 96/136 (70%), Gaps = 11/136 (8%)

Query: 30  PQDYVNAHNAARAQVGVNPVKWDESIAAFARSYASQQIASCNL---------NLA-GSSG 79
           PQD+++AHNAARA VGV P+KWD+++AA+A+ YA+Q+   C L         NL  GS G
Sbjct: 1   PQDFLDAHNAARAAVGVPPLKWDDTLAAYAQRYANQRRGDCALVHSNGPYGENLFWGSGG 60

Query: 80  NLSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKFRC-NYGGTSI 138
           N S AD V  WVSEK  YDY+SN+C AGK+CGHYT VVWRN+ R+GCA+  C N GG  I
Sbjct: 61  NWSAADAVASWVSEKKYYDYDSNTCAAGKMCGHYTQVVWRNTTRVGCARVTCDNGGGVFI 120

Query: 139 GCNYASPGNVVGVKPY 154
            CNY  PGN +G +PY
Sbjct: 121 ICNYDPPGNYIGQRPY 136

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. It also includes CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. Length = 136

>gnl|CDD|240184 cd05384, SCP_PRY1_like, SCP_PRY1_like: SCP-like extracellular protein domain, PRY1-like sub-family restricted to fungi

 Score =  103 bits (259), Expect = 3e-29
 Identities = 48/133 (36%), Positives = 70/133 (52%), Gaps = 14/133 (10%)

Query: 28  DFPQDYVNAHNAARAQVGVNPVKWDESIAAFARSYASQQIASCNLNLAGSSG----NL-- 81
            F    ++AHN+ RA  GV P+ W+ ++A +A+ YA+     C+ NLA S G    NL  
Sbjct: 1   SFASSILDAHNSKRALHGVQPLTWNNTLAEYAQDYANS--YDCSGNLAHSGGPYGENLAA 58

Query: 82  ---SGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKFRC-NYGGTS 137
              SG   V  W  E  DYDY++      +  GH+T +VW+++ ++GCA   C    G  
Sbjct: 59  GYPSGTSAVDAWYDEIEDYDYSNPG--FSEATGHFTQLVWKSTTQVGCAYKDCGGAWGWY 116

Query: 138 IGCNYASPGNVVG 150
           I C Y   GNV+G
Sbjct: 117 IVCEYDPAGNVIG 129

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. PRY1 is a yeast protein that is up-regulated in core ESCRT mutants. This PRY1-like group also contains fruiting body proteins SC7/14 from Schizophyllum commune. Length = 129

>gnl|CDD|238097 cd00168, SCP, SCP: SCP-like extracellular protein domain, found in eukaryotes and prokaryotes

 Score = 99.4 bits (248), Expect = 9e-28
 Identities = 40/123 (32%), Positives = 63/123 (51%), Gaps = 12/123 (9%)

Query: 30  PQDYVNAHNAARAQV-GVNPVKWDESIAAFARSYASQ---------QIASCNLNLAGSSG 79
            Q+ V  HN+ RA+V G+ P+ WD  +A  A++YA++                NLA  S 
Sbjct: 1   AQEVVRLHNSYRAKVNGMLPMSWDAELAKTAQNYANRCIFKHSGEDGRGFVGENLAAGSY 60

Query: 80  NLSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKFRCNYGGTSIG 139
           +++G   V  W +E  +Y++     ++G   GHYT VVW+N+ +IGC    C      + 
Sbjct: 61  DMTGPAAVQAWYNEIKNYNFGQPGFSSG--TGHYTQVVWKNTTKIGCGVAFCGSNSYYVV 118

Query: 140 CNY 142
           CNY
Sbjct: 119 CNY 121

This family includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. This family also includes CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Roles for CRISP, in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as the CRISPs, are involved in, and is supported by sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how helothermine, a toxic peptide secreted by the beaded lizard, blocks Ca++ transporting ryanodine receptors. Little is known about the biological roles of the bacterial and archaeal SCP domains. Length = 122

>gnl|CDD|214553 smart00198, SCP, SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains

 Score = 97.1 bits (242), Expect = 1e-26
 Identities = 42/146 (28%), Positives = 62/146 (42%), Gaps = 35/146 (23%)

Query: 28  DFPQDYVNAHNAARAQVG-----------VNPVKWDESIAAFARSYASQQIASCNL---- 72
              Q+ ++AHN  R+QV            +  + WD  +A+ A+++A+Q    C      
Sbjct: 1   AQQQEILDAHNKLRSQVAGGFLAAPAASNMLKLTWDCELASSAQNWANQ----CPFGHST 56

Query: 73  -------NLAGSSGNL-----SGADVVGLWVSEKADYDYNSNSCN-AGKVCGHYTHVVWR 119
                  NLA  S +        +  V LW  E  DY Y+SN+C       GHYT VVW 
Sbjct: 57  PRPGYGENLAWWSSSTALPDTYASAAVQLWYDEFQDYGYSSNTCKDTNGKIGHYTQVVWA 116

Query: 120 NSVRIGCAKFRC---NYGGTSIGCNY 142
            + ++GC    C       T + CNY
Sbjct: 117 KTYKVGCGVANCPDGTKKKTVVVCNY 142

Human glioma pathogenesis-related protein GliPR and the plant pathogenesis-related protein represent functional links between plant defense systems and human immune system. This family has no known function. Length = 144

>gnl|CDD|240186 cd05559, SCP_HrTT-1, SCP_HrTT-1: SCP-like extracellular protein domain in HrTT-1, a tail-tip epidermis marker in ascidians

 Score = 92.2 bits (229), Expect = 9e-25
 Identities = 44/113 (38%), Positives = 60/113 (53%), Gaps = 15/113 (13%)

Query: 34  VNAHNAARAQVG-----VNPVKWDESIAAFARSYASQQIASCNL---------NLAGSSG 79
           V+ HN  R+QV      +  + WDE +AA A +YA + I   N          NL  S+G
Sbjct: 5   VDLHNQYRSQVSPPAANMLKMTWDEELAALAEAYARKCIWDHNPDRGHLRVGENLFISTG 64

Query: 80  -NLSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKFRC 131
                   V  W +EK DY+YN+N+C   K+CGHYT VVW N+ +IGC  + C
Sbjct: 65  PPFDATKAVEDWNNEKLDYNYNTNTCAPNKMCGHYTQVVWANTFKIGCGSYFC 117

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. Length = 136

>gnl|CDD|240182 cd05382, SCP_GAPR-1_like, SCP_GAPR-1_like: SCP-like extracellular protein domain, golgi-associated plant pathogenesis related protein (GAPR)-like sub-family

 Score = 86.9 bits (216), Expect = 9e-23
 Identities = 42/135 (31%), Positives = 68/135 (50%), Gaps = 17/135 (12%)

Query: 28  DFPQDYVNAHNAARAQVGVNPVKWDESIAAFARSYASQQIASCNL-----------NLAG 76
           DF ++ ++AHN  RA  G  P+K D+ +A  A+ +A +++AS              NLA 
Sbjct: 1   DFQKECLDAHNEYRALHGAPPLKLDKELAKEAQKWA-EKLASSGKLQHSSPSGYGENLAY 59

Query: 77  SSGN---LSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKFRCNY 133
           +SG+   L+G + V  W +E   YD+N    ++    GH+T VVW++S  +G    +   
Sbjct: 60  ASGSGPDLTGEEAVDSWYNEIKKYDFNKPGFSSK--TGHFTQVVWKSSTELGVGVAKSKK 117

Query: 134 GGTSIGCNYASPGNV 148
           G   +   Y   GNV
Sbjct: 118 GCVYVVARYRPAGNV 132

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. GAPR-1 and GLIPR-2 appear to be synonyms. Length = 132

>gnl|CDD|240185 cd05385, SCP_GLIPR-1_like, SCP_GLIPR-1_like: SCP-like extracellular protein domain, glioma pathogenesis-related protein (GLIPR)-like sub-family

 Score = 83.2 bits (206), Expect = 4e-21
 Identities = 44/144 (30%), Positives = 65/144 (45%), Gaps = 30/144 (20%)

Query: 28  DFPQDYVNAHNAARAQV-----GVNPVKWDESIAAFARSYASQQIASCNLNL-------- 74
           +F  + V  HN  R++V      +  + WD ++A  AR++A +     N+ L        
Sbjct: 1   EFIDECVRIHNELRSKVSPPAANMRYMTWDAALAKTARAWAKKCKFKHNIYLGKRYKCHP 60

Query: 75  ----------AGSSGNLSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRI 124
                      GS    S  + V  W +E   YD+++NSC+  +VCGHYT VVW  S ++
Sbjct: 61  KFTSVGENIWLGSIYIFSPKNAVTSWYNEGKFYDFDTNSCS--RVCGHYTQVVWATSYKV 118

Query: 125 GCAKFRCNYGGTSIG-----CNYA 143
           GCA   C   G         CNYA
Sbjct: 119 GCAVAFCPNLGGIPNAAIFVCNYA 142

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. Length = 144

>gnl|CDD|240180 cd05380, SCP_euk, SCP_euk: SCP-like extracellular protein domain, as found mainly in eukaryotes

 Score = 74.9 bits (184), Expect = 7e-18
 Identities = 42/147 (28%), Positives = 62/147 (42%), Gaps = 38/147 (25%)

Query: 31  QDYVNAHNAARAQV------------GVNPVKWDESIAAFARSYASQQIASCNL------ 72
           Q  ++AHN  R++V             +  +KWD+ +AA A+++A      C        
Sbjct: 2   QAILDAHNELRSKVAKGTYSLLPPASNMPKLKWDDELAALAQNWAKT----CVFEHSPCR 57

Query: 73  -------NLAGSSGNLS-----GADVVGLWVSEKADYDYNSNS-CNAGKVCGHYTHVVWR 119
                  NLA  S   S       D V  W +E  DY + SN   N     GH+T +VW 
Sbjct: 58  NTGGVGQNLAAGSSTGSTVEELAEDAVNAWYNELKDYGFGSNPTNNFNSGIGHFTQMVWA 117

Query: 120 NSVRIGCAKFRC---NYGGTSIGCNYA 143
            + ++GCA  RC       T + CNY+
Sbjct: 118 KTTKVGCAVARCGKDGGNKTVVVCNYS 144

This family includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. Length = 144

>gnl|CDD|215778 pfam00188, CAP, Cysteine-rich secretory protein family

 Score = 58.8 bits (142), Expect = 6e-12
 Identities = 37/121 (30%), Positives = 53/121 (43%), Gaps = 12/121 (9%)

Query: 34  VNAHNAAR-AQVGVNPVKWDESIAAFARSYASQQIASC--------NLNLAGSSGNLSGA 84
           +N HN  R A  G  P+ WD ++AA A+ +A+    +         NL L   +G     
Sbjct: 1   LNLHNELRSAAGGAPPLSWDPTLAAAAQDHAAYCADNGYFGHDYGENLALVSVAGKADDP 60

Query: 85  DV--VGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKFRCNYGGTSIG-CN 141
            V  V  W  E  DYD            GH T+++W  S ++GCA  +C  G +    CN
Sbjct: 61  GVAAVENWYDEAKDYDAAVGINAWMSSPGHRTNLLWPKSTKVGCAVAKCGDGSSYYVVCN 120

Query: 142 Y 142
           Y
Sbjct: 121 Y 121

This is a large family of cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins (CAP) that are found in a wide range of organisms, including prokaryotes and non-vertebrate eukaryotes, The nine subfamilies of the mammalian CAP 'super'family include: the human glioma pathogenesis-related 1 (GLIPR1), Golgi associated pathogenesis related-1 (GAPR1) proteins, peptidase inhibitor 15 (PI15), peptidase inhibitor 16 (PI16), cysteine-rich secretory proteins (CRISPs), CRISP LCCL domain containing 1 (CRISPLD1), CRISP LCCL domain containing 2 (CRISPLD2), mannose receptor like and the R3H domain containing like proteins. Members are most often secreted and have an extracellular endocrine or paracrine function and are involved in processes including the regulation of extracellular matrix and branching morphogenesis, potentially as either proteases or protease inhibitors; in ion channel regulation in fertility; as tumour suppressor or pro-oncogenic genes in tissues including the prostate; and in cell-cell adhesion during fertilisation. The overall protein structural conservation within the CAP 'super'family results in fundamentally similar functions for the CAP domain in all members, yet the diversity outside of this core region dramatically alters the target specificity and, thus, the biological consequences. The Ca++-chelating function would fit with the various signalling processes (e.g. the CRISP proteins) that members of this family are involved in, and also the sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how helothermine from Heloderma horridum horridum blocks the Ca++ transporting ryanodine receptors. Length = 121

>gnl|CDD|240183 cd05383, SCP_CRISP, SCP_CRISP: SCP-like extracellular protein domain, CRISP-like sub-family

 Score = 58.5 bits (142), Expect = 9e-12
 Identities = 37/118 (31%), Positives = 52/118 (44%), Gaps = 22/118 (18%)

Query: 34  VNAHNAARAQVGVNP-------VKWDESIAAFARSYASQ-----------QIA--SCNLN 73
           V+ HN  R  V  NP       ++W+E  A  A+ +A+             I   +C  N
Sbjct: 7   VDLHNELRRSV--NPTASNMLKMEWNEEAAQNAKKWANTCNLTHSPPNGRTIGGITCGEN 64

Query: 74  LAGSSGNLSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKFRC 131
           +  SS   S +DV+  W  E  D+ Y   +   G V GHYT +VW  S  +GCA   C
Sbjct: 65  IFMSSYPRSWSDVIQAWYDEYKDFKYGVGATPPGAVVGHYTQIVWYKSYLVGCAVAYC 122

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Involvement of CRISP in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as the CRISPs, are involved in, and is supported by sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how helothermine, a toxic peptide secreted by the beaded lizard, blocks Ca++ transporting ryanodine receptors. One member, DE or CRISP-1, has been shown to mediate gamete fusion by binding to the egg surface; a sequence motif in the SCP domain plays a role in that binding. Length = 138

>gnl|CDD|225218 COG2340, COG2340, Uncharacterized protein with SCP/PR1 domains [Function unknown]

 Score = 52.2 bits (125), Expect = 7e-09
 Identities = 29/135 (21%), Positives = 44/135 (32%), Gaps = 21/135 (15%)

Query: 17  GLALALPSRAQDFPQDYVNAHNAARAQVGVNPVKWDESIAAFARSYASQQIASCNLNLAG 76
              +   S    F +  V   N  RA+ G+ P+ W+ ++A  AR++A     + N   + 
Sbjct: 68  SSPVESQSTLAQFEKAVVAETNQERAKHGLPPLAWNATLAKAARNHARDM--AKNGYFSH 125

Query: 77  SSGN-------LSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKF 129
           +S         L    + G    E   Y  N                 W NS   G  K 
Sbjct: 126 TSPTGETPADRLKKYGISGATAGENIAYGSNDP--------PEAAVDGWLNS--PGHRKN 175

Query: 130 RCN--YGGTSIGCNY 142
             N  Y    +G  Y
Sbjct: 176 LLNPAYTEIGVGVAY 190

Length = 207

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	154
cd05381	136	SCP_PR-1_like SCP_PR-1_like: SCP-like extracellula	100.0
cd05384	129	SCP_PRY1_like SCP_PRY1_like: SCP-like extracellula	100.0
cd05382	132	SCP_GAPR-1_like SCP_GAPR-1_like: SCP-like extracel	100.0
cd05383	138	SCP_CRISP SCP_CRISP: SCP-like extracellular protei	100.0
smart00198	144	SCP SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extra	100.0
cd05385	144	SCP_GLIPR-1_like SCP_GLIPR-1_like: SCP-like extrac	100.0
cd05559	136	SCP_HrTT-1 SCP_HrTT-1: SCP-like extracellular prot	99.98
cd00168	122	SCP SCP: SCP-like extracellular protein domain, fo	99.97
KOG3017	225	consensus Defense-related protein containing SCP d	99.97
cd05380	144	SCP_euk SCP_euk: SCP-like extracellular protein do	99.96
PF00188	124	CAP: Cysteine-rich secretory protein family; Inter	99.86
TIGR02909	127	spore_YkwD uncharacterized protein, YkwD family. M	99.65
cd05379	122	SCP_bacterial SCP_bacterial: SCP-like extracellula	99.46
COG2340	207	Uncharacterized protein with SCP/PR1 domains [Func	98.7
PF11054	254	Surface_antigen: Sporozoite TA4 surface antigen; I	90.83
PF07172	95	GRP: Glycine rich protein family; InterPro: IPR010	88.11

>cd05381 SCP_PR-1_like SCP_PR-1_like: SCP-like extracellular protein domain, PR-1 like subfamily

Probab=100.00  E-value=4.6e-40  Score=228.00  Aligned_cols=124  Identities=60%  Similarity=1.139  Sum_probs=112.5

Q ss_pred             HHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhhhcCCC---------ceeeccC-CCChHHHHHHHHhhhccCCCC
Q 044216           31 QDYVNAHNAARAQVGVNPVKWDESIAAFARSYASQQIASCNL---------NLAGSSG-NLSGADVVGLWVSEKADYDYN  100 (154)
Q Consensus        31 ~~il~~hN~~R~~~~m~~L~Wd~~La~~Aq~~a~~~~~~c~~---------ni~~~~~-~~~~~~~v~~W~~e~~~y~~~  100 (154)
                      +.||+.||++|+.++|++|+||++||..||.||++|+++|..         |+....+ ...+.++|+.|++|...|++.
T Consensus         2 ~~il~~hN~~R~~~~~~~L~Wd~~La~~A~~~a~~~~~~c~~~~~~~~~GeNi~~~~~~~~~~~~~v~~W~~e~~~y~~~   81 (136)
T cd05381           2 QDFLDAHNAARAAVGVPPLKWDDTLAAYAQRYANQRRGDCALVHSNGPYGENLFWGSGGNWSAADAVASWVSEKKYYDYD   81 (136)
T ss_pred             hHHHHHHHHHHHhcCCCcceECHHHHHHHHHHHHHhcCCCCcccCCCCCCceEEEecCCCCCHHHHHHHHHhccccCCCC
Confidence            689999999999999999999999999999999998877764         6765543 357889999999999999998


Q ss_pred             CCCCCCCccchhHHHHHHHhCCeeeEEEEEeCC-CCEEEEEEcCCCCccCCCCCC
Q 044216          101 SNSCNAGKVCGHYTHVVWRNSVRIGCAKFRCNY-GGTSIGCNYASPGNVVGVKPY  154 (154)
Q Consensus       101 ~~~~~~~~~~~~f~q~vw~~t~~vGCa~~~c~~-~~~~~vC~Y~p~gn~~g~~~Y  154 (154)
                      .+.+..+..++||+||||+++++||||++.|.+ +..++||+|+|+||+.|++||
T Consensus        82 ~~~~~~~~~~~hftq~vw~~t~~vGCa~~~c~~~~~~~vvC~Y~p~gn~~g~~~Y  136 (136)
T cd05381          82 SNTCAAGKMCGHYTQVVWRNTTRVGCARVTCDNGGGVFIICNYDPPGNYIGQRPY  136 (136)
T ss_pred             CCCcCCCccchHHHHHHHHhcCEeceEEEEeCCCCcEEEEEEeeCCCCCCCCCCC
Confidence            888777778999999999999999999999987 468999999999999999998

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. It also includes CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.

>cd05384 SCP_PRY1_like SCP_PRY1_like: SCP-like extracellular protein domain, PRY1-like sub-family restricted to fungi

Probab=100.00  E-value=2.6e-35  Score=202.45  Aligned_cols=119  Identities=39%  Similarity=0.778  Sum_probs=103.2

Q ss_pred             chHHHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhhhcCCC---------ceeeccCCCChHHHHHHHHhhhccCC
Q 044216           28 DFPQDYVNAHNAARAQVGVNPVKWDESIAAFARSYASQQIASCNL---------NLAGSSGNLSGADVVGLWVSEKADYD   98 (154)
Q Consensus        28 ~~~~~il~~hN~~R~~~~m~~L~Wd~~La~~Aq~~a~~~~~~c~~---------ni~~~~~~~~~~~~v~~W~~e~~~y~   98 (154)
                      ++++.||+.||.+|+.+++++|+||.+|+..||.||++|...|..         |+..+..  .+.++++.|++|...|+
T Consensus         1 ~~~~~iL~~hN~~R~~~g~~~L~w~~~La~~A~~~a~~c~~~~~~~~~~~~~geNi~~~~~--~~~~~v~~W~~e~~~y~   78 (129)
T cd05384           1 SFASSILDAHNSKRALHGVQPLTWNNTLAEYAQDYANSYDCSGNLAHSGGPYGENLAAGYP--SGTSAVDAWYDEIEDYD   78 (129)
T ss_pred             CHHHHHHHHHHHHHHHcCCCcCccCHHHHHHHHHHHHHhccCCceecCCCCCCcEEEEecC--CHHHHHHHHHhhhhhCC
Confidence            468999999999999999999999999999999999988744432         6665432  68899999999999999


Q ss_pred             CCCCCCCCCccchhHHHHHHHhCCeeeEEEEEeCCC-CEEEEEEcCCCCccCC
Q 044216           99 YNSNSCNAGKVCGHYTHVVWRNSVRIGCAKFRCNYG-GTSIGCNYASPGNVVG  150 (154)
Q Consensus        99 ~~~~~~~~~~~~~~f~q~vw~~t~~vGCa~~~c~~~-~~~~vC~Y~p~gn~~g  150 (154)
                      +..+.+  +..++||+||||+++++||||++.|.+. ..++||+|+|+||+.|
T Consensus        79 ~~~~~~--~~~~~h~tqmvw~~t~~vGCa~~~c~~~~~~~~vC~Y~p~Gn~~g  129 (129)
T cd05384          79 YSNPGF--SEATGHFTQLVWKSTTQVGCAYKDCGGAWGWYIVCEYDPAGNVIG  129 (129)
T ss_pred             CCCCCC--CCcccchhhhhhhccceeeeEEEEeCCCCeEEEEEEEECCCCCCc
Confidence            977543  3568999999999999999999999873 5889999999999875

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. PRY1 is a yeast protein that is up-regulated in core ESCRT mutants. This PRY1-like group also contains fruiting body proteins SC7/14 from Schizophyllum commune.

>cd05382 SCP_GAPR-1_like SCP_GAPR-1_like: SCP-like extracellular protein domain, golgi-associated plant pathogenesis related protein (GAPR)-like sub-family

Probab=100.00  E-value=4.6e-35  Score=201.64  Aligned_cols=119  Identities=35%  Similarity=0.625  Sum_probs=104.0

Q ss_pred             chHHHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhhhcCCC----------ceeeccC---CCChHHHHHHHHhhh
Q 044216           28 DFPQDYVNAHNAARAQVGVNPVKWDESIAAFARSYASQQIASCNL----------NLAGSSG---NLSGADVVGLWVSEK   94 (154)
Q Consensus        28 ~~~~~il~~hN~~R~~~~m~~L~Wd~~La~~Aq~~a~~~~~~c~~----------ni~~~~~---~~~~~~~v~~W~~e~   94 (154)
                      ++++.||+.||.+|+.++|++|+||++|+..||.||++|+..+..          |+++..+   ...+.++|+.|++|.
T Consensus         1 ~~~~~iL~~hN~~R~~~g~~~L~wd~~La~~A~~~a~~c~~~~~~~h~~~~~~GeN~~~~~~~~~~~~~~~~v~~W~~e~   80 (132)
T cd05382           1 DFQKECLDAHNEYRALHGAPPLKLDKELAKEAQKWAEKLASSGKLQHSSPSGYGENLAYASGSGPDLTGEEAVDSWYNEI   80 (132)
T ss_pred             CHHHHHHHHHHHHHHHcCCCcCeeCHHHHHHHHHHHHHhhhcCceeCCCCCCCCceeEEecCCCCCCCHHHHHHHHHhcc
Confidence            478999999999999999999999999999999999999854321          7776653   457899999999999


Q ss_pred             ccCCCCCCCCCCCccchhHHHHHHHhCCeeeEEEEEeCCCCEEEEEEcCCCCcc
Q 044216           95 ADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKFRCNYGGTSIGCNYASPGNV  148 (154)
Q Consensus        95 ~~y~~~~~~~~~~~~~~~f~q~vw~~t~~vGCa~~~c~~~~~~~vC~Y~p~gn~  148 (154)
                      ..|++..+..  +..++||+||||+++++||||++.|.++..++||+|+|+||+
T Consensus        81 ~~y~~~~~~~--~~~~gh~tqmvw~~t~~vGCa~~~~~~~~~~~vC~Y~p~Gn~  132 (132)
T cd05382          81 KKYDFNKPGF--SSKTGHFTQVVWKSSTELGVGVAKSKKGCVYVVARYRPAGNV  132 (132)
T ss_pred             ccCCCCCCCC--CCCCCCeEEeEecCCCceeeEEEEcCCCCEEEEEEEeCCCCC
Confidence            9999875443  356999999999999999999999987778999999999985

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. GAPR-1 and GLIPR-2 appear to be synonyms.

>cd05383 SCP_CRISP SCP_CRISP: SCP-like extracellular protein domain, CRISP-like sub-family

Probab=100.00  E-value=1.8e-33  Score=195.49  Aligned_cols=117  Identities=31%  Similarity=0.510  Sum_probs=100.4

Q ss_pred             hHHHHHHHHHHHHhhCC-----CCCcccCHHHHHHHHHHHHhhhh---cCC----------CceeeccCCCChHHHHHHH
Q 044216           29 FPQDYVNAHNAARAQVG-----VNPVKWDESIAAFARSYASQQIA---SCN----------LNLAGSSGNLSGADVVGLW   90 (154)
Q Consensus        29 ~~~~il~~hN~~R~~~~-----m~~L~Wd~~La~~Aq~~a~~~~~---~c~----------~ni~~~~~~~~~~~~v~~W   90 (154)
                      .++.||+.||.+|+.+.     |.+|+||++||..||.||++|..   .|.          .|++.......+.++|+.|
T Consensus         2 ~~~~il~~HN~~R~~~~p~a~~M~~l~Wd~~La~~A~~~a~~C~~~~~~~~~~~~~~~~~GeNl~~~~~~~~~~~av~~W   81 (138)
T cd05383           2 VQKEIVDLHNELRRSVNPTASNMLKMEWNEEAAQNAKKWANTCNLTHSPPNGRTIGGITCGENIFMSSYPRSWSDVIQAW   81 (138)
T ss_pred             HHHHHHHHHHHHhccCCCCcccCcccEeCHHHHHHHHHHHhcCCCcCCchhhcccCCCCcceeeeccCCCCCHHHHHHHH
Confidence            47899999999999985     77899999999999999998872   221          1565554445788999999


Q ss_pred             HhhhccCCCCCCCCCCCccchhHHHHHHHhCCeeeEEEEEeCCC--CEEEEEEcCCC
Q 044216           91 VSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKFRCNYG--GTSIGCNYASP  145 (154)
Q Consensus        91 ~~e~~~y~~~~~~~~~~~~~~~f~q~vw~~t~~vGCa~~~c~~~--~~~~vC~Y~p~  145 (154)
                      |+|...|+|+.+.+..+..++|||||||++|++||||++.|.++  +.++||+|+|+
T Consensus        82 ~~e~~~y~~~~~~~~~~~~~~hftqmvw~~t~~vGCa~~~c~~~~~~~~~vC~Y~P~  138 (138)
T cd05383          82 YDEYKDFKYGVGATPPGAVVGHYTQIVWYKSYLVGCAVAYCPNSKYKYFYVCHYCPA  138 (138)
T ss_pred             HHHHHhCCCCCCCCCCCCchhhHHHHHHHhccccceEEEECCCCCcCEEEEEecCCC
Confidence            99999999998777677889999999999999999999999875  68999999995

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Involvement of CRISP in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as the CRISPs, are involved in, and is supported by sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how helothermine, a toxic peptide secreted by the beaded lizard, blocks Ca++ t

>smart00198 SCP SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains

Probab=100.00  E-value=3.3e-33  Score=194.98  Aligned_cols=117  Identities=37%  Similarity=0.637  Sum_probs=101.5

Q ss_pred             hHHHHHHHHHHHHhhCC-----------CCCcccCHHHHHHHHHHHHhhh---hcCCC---ceeeccC-----CCChHHH
Q 044216           29 FPQDYVNAHNAARAQVG-----------VNPVKWDESIAAFARSYASQQI---ASCNL---NLAGSSG-----NLSGADV   86 (154)
Q Consensus        29 ~~~~il~~hN~~R~~~~-----------m~~L~Wd~~La~~Aq~~a~~~~---~~c~~---ni~~~~~-----~~~~~~~   86 (154)
                      .++.||+.||.+|+.++           |++|+||.+||..||.||++|.   +.|..   |++...+     ...+.++
T Consensus         2 ~~~~iL~~HN~~R~~~a~G~~~~p~a~~m~~l~Wd~~La~~A~~~a~~C~~~~~~~~~~GeNi~~~~~~~~~~~~~~~~a   81 (144)
T smart00198        2 QQQEILDAHNKLRSQVAKGLLANPAASNMLKLTWDCELASSAQNWANQCPFGHSTPRGYGENLAWWSSSTDLPITYASAA   81 (144)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCHHHHHHHHHHHHhCCCcCCCcCCcCcceEEecccCcccchhHHHH
Confidence            58899999999999999           9999999999999999999887   23322   7766542     3478889


Q ss_pred             HHHHHhhhccCCCCCCCCCC-CccchhHHHHHHHhCCeeeEEEEEeCCCC---EEEEEEcCCC
Q 044216           87 VGLWVSEKADYDYNSNSCNA-GKVCGHYTHVVWRNSVRIGCAKFRCNYGG---TSIGCNYASP  145 (154)
Q Consensus        87 v~~W~~e~~~y~~~~~~~~~-~~~~~~f~q~vw~~t~~vGCa~~~c~~~~---~~~vC~Y~p~  145 (154)
                      |+.|++|...|++..+.+.. +..++||+||||+++++||||++.|.++.   .++||+|+|+
T Consensus        82 v~~W~~e~~~y~~~~~~~~~~~~~~~hftqmvw~~s~~vGCa~~~c~~~~~~~~~~vC~Y~P~  144 (144)
T smart00198       82 VQLWYDEFQDYGYSSNTCKDTNGKIGHYTQVVWAKTYKVGCGVSNCPDGTKKKTVVVCNYDPP  144 (144)
T ss_pred             HHHHHHHHHHcCCCCCccccCccchhHHHHHHHHhcCCcceEEEECCCCCcceEEEEEecCCC
Confidence            99999999999998877665 57799999999999999999999998874   6999999995

Human glioma pathogenesis-related protein GliPR and the plant pathogenesis-related protein represent functional links between plant defense systems and human immune system. This family has no known function.

>cd05385 SCP_GLIPR-1_like SCP_GLIPR-1_like: SCP-like extracellular protein domain, glioma pathogenesis-related protein (GLIPR)-like sub-family

Probab=100.00  E-value=1.5e-32  Score=192.19  Aligned_cols=116  Identities=35%  Similarity=0.628  Sum_probs=97.9

Q ss_pred             chHHHHHHHHHHHHhhCC-----CCCcccCHHHHHHHHHHHHhhhh---cCC--------------Cceeecc-CCCChH
Q 044216           28 DFPQDYVNAHNAARAQVG-----VNPVKWDESIAAFARSYASQQIA---SCN--------------LNLAGSS-GNLSGA   84 (154)
Q Consensus        28 ~~~~~il~~hN~~R~~~~-----m~~L~Wd~~La~~Aq~~a~~~~~---~c~--------------~ni~~~~-~~~~~~   84 (154)
                      +++++||+.||.+|+.+.     |.+|+||++||..||.||++|..   .|.              .||+... +...+.
T Consensus         1 ~f~~~~L~~HN~~R~~~~p~a~~m~~l~Wd~~La~~Aq~~a~~C~~~~~~~~~~~~~~~~~~~~~GeNi~~~~~~~~~~~   80 (144)
T cd05385           1 EFIDECVRIHNELRSKVSPPAANMRYMTWDAALAKTARAWAKKCKFKHNIYLGKRYKCHPKFTSVGENIWLGSIYIFSPK   80 (144)
T ss_pred             CHHHHHHHHHHHHHhhCCCCcccCcccccCHHHHHHHHHHHhcCCCCCCchhhcccccccccCcccceeeecccCCCCHH
Confidence            578999999999999994     89999999999999999998862   221              1665544 234788


Q ss_pred             HHHHHHHhhhccCCCCCCCCCCCccchhHHHHHHHhCCeeeEEEEEeCCC-----CEEEEEEcCCC
Q 044216           85 DVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKFRCNYG-----GTSIGCNYASP  145 (154)
Q Consensus        85 ~~v~~W~~e~~~y~~~~~~~~~~~~~~~f~q~vw~~t~~vGCa~~~c~~~-----~~~~vC~Y~p~  145 (154)
                      ++++.||+|...|+|..+.+.  ..++|||||||++|++||||++.|..+     ..++||+|+|+
T Consensus        81 ~av~~W~~e~~~y~~~~~~~~--~~~ghftqmvw~~t~~vGCa~~~c~~~~~~~~~~~vVC~Y~p~  144 (144)
T cd05385          81 NAVTSWYNEGKFYDFDTNSCS--RVCGHYTQVVWATSYKVGCAVAFCPNLGGIPNAAIFVCNYAPA  144 (144)
T ss_pred             HHHHHHHHHHHhCCCCCCCCC--CcccCHHHHHHhhccccceEEEECCCCCCccccEEEEEeCCCC
Confidence            999999999999999876654  469999999999999999999999774     26899999994

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.

>cd05559 SCP_HrTT-1 SCP_HrTT-1: SCP-like extracellular protein domain in HrTT-1, a tail-tip epidermis marker in ascidians

Probab=99.98  E-value=7.2e-32  Score=187.05  Aligned_cols=114  Identities=41%  Similarity=0.786  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHhhCC-----CCCcccCHHHHHHHHHHHHhhhh---cCC----C--ceeeccC-CCChHHHHHHHHhhh
Q 044216           30 PQDYVNAHNAARAQVG-----VNPVKWDESIAAFARSYASQQIA---SCN----L--NLAGSSG-NLSGADVVGLWVSEK   94 (154)
Q Consensus        30 ~~~il~~hN~~R~~~~-----m~~L~Wd~~La~~Aq~~a~~~~~---~c~----~--ni~~~~~-~~~~~~~v~~W~~e~   94 (154)
                      |+.||+.||++|+.++     |.+|+||++||..||.||++|..   .|.    .  |++...+ ...+.++++.|++|.
T Consensus         1 r~~il~~HN~~R~~~~p~a~~m~~L~Wd~~La~~A~~~a~~C~~~~~~~~~~~~~GeNl~~~~~~~~~~~~~v~~W~~e~   80 (136)
T cd05559           1 RLNLVDLHNQYRSQVSPPAANMLKMTWDEELAALAEAYARKCIWDHNPDRGHLRVGENLFISTGPPFDATKAVEDWNNEK   80 (136)
T ss_pred             CcHHHHHHHHHHhhCCCccccCcccccCHHHHHHHHHHHHhccccCCCcccCCCceeeeeecCCCCCCHHHHHHHHHHHH
Confidence            4789999999999996     77999999999999999998873   222    1  6766553 357899999999999


Q ss_pred             ccCCCCCCCCCCCccchhHHHHHHHhCCeeeEEEEEeCCC-------CEEEEEEcC
Q 044216           95 ADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKFRCNYG-------GTSIGCNYA  143 (154)
Q Consensus        95 ~~y~~~~~~~~~~~~~~~f~q~vw~~t~~vGCa~~~c~~~-------~~~~vC~Y~  143 (154)
                      ..|+++.+.+..+..++||+||||+++++||||++.|.++       ..++||+|+
T Consensus        81 ~~y~~~~~~~~~~~~~~hftqmvw~~t~~vGCa~~~c~~~~~~~~~~~~~~vC~Y~  136 (136)
T cd05559          81 LDYNYNTNTCAPNKMCGHYTQVVWANTFKIGCGSYFCETLEVLRWENATLLVCNYG  136 (136)
T ss_pred             HhcCCCCCCCCCCCcccchHHHHHhccCccceEEEECCCCCCCCcccCEEEEecCC
Confidence            9999998888777889999999999999999999999652       478999995

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.

>cd00168 SCP SCP: SCP-like extracellular protein domain, found in eukaryotes and prokaryotes

Probab=99.97  E-value=8.4e-31  Score=178.25  Aligned_cols=111  Identities=36%  Similarity=0.689  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHhhC-CCCCcccCHHHHHHHHHHHHhhhh---cCC------CceeeccCCCChHHHHHHHHhhhccCCCC
Q 044216           31 QDYVNAHNAARAQV-GVNPVKWDESIAAFARSYASQQIA---SCN------LNLAGSSGNLSGADVVGLWVSEKADYDYN  100 (154)
Q Consensus        31 ~~il~~hN~~R~~~-~m~~L~Wd~~La~~Aq~~a~~~~~---~c~------~ni~~~~~~~~~~~~v~~W~~e~~~y~~~  100 (154)
                      ++||+.||.+|+.+ .|++|+||++|+..||.+|++|..   .+.      .|++.+.+...+.++++.|++|...|+|.
T Consensus         2 ~~il~~hN~~R~~~a~~~~L~wd~~La~~A~~~a~~c~~~h~~~~~~~~~geNi~~~~~~~~~~~~v~~W~~e~~~y~~~   81 (122)
T cd00168           2 QEVVRLHNSYRAKVNGMLPMSWDAELAKTAQNYANRCIFKHSGEDGRGFVGENLAAGSYDMTGPAAVQAWYNEIKNYNFG   81 (122)
T ss_pred             cHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHHHhhccccCCCcccCCCCCceeEEecCCCCHHHHHHHHHHHHHhCCCC
Confidence            57999999999999 999999999999999999998862   222      17777665568999999999999999998


Q ss_pred             CCCCCCCccchhHHHHHHHhCCeeeEEEEEeCCCCEEEEEEcC
Q 044216          101 SNSCNAGKVCGHYTHVVWRNSVRIGCAKFRCNYGGTSIGCNYA  143 (154)
Q Consensus       101 ~~~~~~~~~~~~f~q~vw~~t~~vGCa~~~c~~~~~~~vC~Y~  143 (154)
                      .+.  .+..++||+||||+++++||||++.|.+++.++||+|+
T Consensus        82 ~~~--~~~~~~h~~qmvw~~s~~vGca~~~~~~~~~~~vC~Y~  122 (122)
T cd00168          82 QPG--FSSGTGHYTQVVWKNTTKIGCGVAFCGSNSYYVVCNYG  122 (122)
T ss_pred             CCC--CCCCccchhhhhcccCCeeeeEEEEcCCCCEEEEEeCc
Confidence            543  34568999999999999999999999877799999995

This family includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. This family also includes CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Roles for CRISP, in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as

>KOG3017 consensus Defense-related protein containing SCP domain [Function unknown]

Probab=99.97  E-value=1.1e-31  Score=200.15  Aligned_cols=127  Identities=40%  Similarity=0.779  Sum_probs=110.0

Q ss_pred             chHHHHHHHHHHHHhhCC-----CCCcccCHHHHHHHHHHHHhhhh-cC--C---C-----ceeeccCC-------CChH
Q 044216           28 DFPQDYVNAHNAARAQVG-----VNPVKWDESIAAFARSYASQQIA-SC--N---L-----NLAGSSGN-------LSGA   84 (154)
Q Consensus        28 ~~~~~il~~hN~~R~~~~-----m~~L~Wd~~La~~Aq~~a~~~~~-~c--~---~-----ni~~~~~~-------~~~~   84 (154)
                      +++++|++.||.+|..+.     |.+|+||++||..||.||++|.. .+  .   .     |+++..+.       ..+.
T Consensus        40 ~~~~~~~~~hn~~r~~~~~~as~m~~m~Wd~~La~~Aq~~a~~c~~~~~~~~~~~~~~~GeNl~~~~~~~~~~~~~~~~~  119 (225)
T KOG3017|consen   40 NLRSEILNGHNVARGAVGPPASNMMKLKWDDELAALAQNWANTCPFGHDKCVHTSFGPYGENLAWGWSSNPPLSLDTSGA  119 (225)
T ss_pred             HHHHHHHhhhHHhcCccCCchHhCccccCCHHHHHHHHHHHhhCCcccCccccccCCCCcccceeeccCCCCccccccHH
Confidence            678899999999999999     99999999999999999999984 23  2   1     77766543       4677


Q ss_pred             HHHHHHHhhhccCCCCCCCCCC---CccchhHHHHHHHhCCeeeEEEEEeCCC-----CEEEEEEcCCCCc-cCCCCCC
Q 044216           85 DVVGLWVSEKADYDYNSNSCNA---GKVCGHYTHVVWRNSVRIGCAKFRCNYG-----GTSIGCNYASPGN-VVGVKPY  154 (154)
Q Consensus        85 ~~v~~W~~e~~~y~~~~~~~~~---~~~~~~f~q~vw~~t~~vGCa~~~c~~~-----~~~~vC~Y~p~gn-~~g~~~Y  154 (154)
                      .+++.|+.|...|++..+.+..   ++.++|||||||+++++||||++.|.++     ..++||+|+|+|| +.++.||
T Consensus       120 ~a~~~w~~e~~~~~~~~~~~~~~~~~~~~gHyTQ~vw~~s~~vGCgv~~c~~~~~~~~~~~~vC~Y~p~g~~~~~~~~y  198 (225)
T KOG3017|consen  120 LAVEAWESEFQEYDWSSNTCSSADFGEGIGHYTQMVWAKSTKVGCGVVRCGNGSNGYNTVAVVCNYDPPGNNINGEIPY  198 (225)
T ss_pred             HHHHHHHHHHHHccCcccccCcccCCCcceEEEEEEEeCCceeceeeccCCCCCCCcceEEEEEEeecCCCCcCCCCcC
Confidence            8999999999999999998875   7889999999999999999999999887     5799999999955 4446776

>cd05380 SCP_euk SCP_euk: SCP-like extracellular protein domain, as found mainly in eukaryotes

Probab=99.96  E-value=9.2e-30  Score=176.95  Aligned_cols=114  Identities=36%  Similarity=0.726  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHHHhhC------------CCCCcccCHHHHHHHHHHHHhhh---hcCC----C--ceeeccCC-----CCh
Q 044216           30 PQDYVNAHNAARAQV------------GVNPVKWDESIAAFARSYASQQI---ASCN----L--NLAGSSGN-----LSG   83 (154)
Q Consensus        30 ~~~il~~hN~~R~~~------------~m~~L~Wd~~La~~Aq~~a~~~~---~~c~----~--ni~~~~~~-----~~~   83 (154)
                      ++.||+.||.+|+.+            .|.+|+||.+||..||.||++|.   +.|.    .  |++.....     ..+
T Consensus         1 ~~~il~~HN~~R~~~a~g~~~~~p~a~~m~~l~Wd~~La~~A~~~a~~C~~~~~~~~~~~~~GeNl~~~~~~~~~~~~~~   80 (144)
T cd05380           1 RQAILDAHNELRSKVAKGTYSLLPPASNMPKLKWDDELAALAQNWAKTCVFEHSPCRNTGGVGQNLAAGSSTGSTVEELA   80 (144)
T ss_pred             CcHHHHHHHHHHHHhhcCCCCCCCchhcCCcceeCHHHHHHHHHHHhcCCCcCCcccCCCCCCcEEEEeccCCCCHHHHH
Confidence            468999999999999            69999999999999999999885   3342    1  77665532     268


Q ss_pred             HHHHHHHHhhhccCCCCCC-CCCCCccchhHHHHHHHhCCeeeEEEEEeCC---CCEEEEEEcC
Q 044216           84 ADVVGLWVSEKADYDYNSN-SCNAGKVCGHYTHVVWRNSVRIGCAKFRCNY---GGTSIGCNYA  143 (154)
Q Consensus        84 ~~~v~~W~~e~~~y~~~~~-~~~~~~~~~~f~q~vw~~t~~vGCa~~~c~~---~~~~~vC~Y~  143 (154)
                      .++|+.|++|...|++... .+..+..++||+||||+++++||||++.|..   ...++||+|+
T Consensus        81 ~~~v~~W~~e~~~~~~~~~~~~~~~~~~~hftq~vw~~t~~vGCa~~~~~~~~~~~~~~vC~Y~  144 (144)
T cd05380          81 EDAVNAWYNELKDYGFGSNPTNNFNSGIGHFTQMVWAKTTKVGCAVARCGKDGGNKTVVVCNYS  144 (144)
T ss_pred             HHHHHHHHHHHHHcCCCcCcccccccchhHHHHHHHHhcCccceEEEEeecCCceEEEEEecCC
Confidence            8999999999999999875 4455678999999999999999999999975   3699999995

This family includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.

>PF00188 CAP: Cysteine-rich secretory protein family; InterPro: IPR014044 The cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins (CAP) superfamily proteins are found in a wide range of organisms, including prokaryotes [] and non-vertebrate eukaryotes [], The nine subfamilies of the mammalian CAP superfamily include: the human glioma pathogenesis-related 1 (GLIPR1), Golgi associated pathogenesis related-1 (GAPR1) proteins, peptidase inhibitor 15 (PI15), peptidase inhibitor 16 (PI16), cysteine-rich secretory proteins (CRISPs), CRISP LCCL domain containing 1 (CRISPLD1), CRISP LCCL domain containing 2 (CRISPLD2), mannose receptor like and the R3H domain containing like proteins

Probab=99.86  E-value=2.1e-21  Score=128.97  Aligned_cols=109  Identities=36%  Similarity=0.549  Sum_probs=77.6

Q ss_pred             HHHHHHHH-hhCCCCCcccCHHHHHHHHHHHHhhhhcCCC------ceeeccCCCChHH----HHHHHHhhhccCCCCC-
Q 044216           34 VNAHNAAR-AQVGVNPVKWDESIAAFARSYASQQIASCNL------NLAGSSGNLSGAD----VVGLWVSEKADYDYNS-  101 (154)
Q Consensus        34 l~~hN~~R-~~~~m~~L~Wd~~La~~Aq~~a~~~~~~c~~------ni~~~~~~~~~~~----~v~~W~~e~~~y~~~~-  101 (154)
                      |+.||++| ....+++|+||++|+..|+.+|+.|......      +............    .++.|+.+...+++.. 
T Consensus         1 L~~~N~~R~~~~~~~~L~~d~~L~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (124)
T PF00188_consen    1 LDLHNEYRSAANGLPPLKWDPELAKAAQAHAKYCANSNSLSHDSGENGSQSSRFGSYSDAQVTAVENWYSESKNYNFQNQ   80 (124)
T ss_dssp             HHHHHHHHHBSSTBB--EE-HHHHHHHHHHHTTTCSSEETTEESEEEEEEESSTTSHHHHHHHHHHHHHGGGGGEETTCS
T ss_pred             CHHHHHHHHHhCCCCCCeeCHHHHHHHHHhhHHhhhhcccccccCCCCccccccccccchhhHHHHHHHhcccccccccc
Confidence            78999999 7778888999999999999999976652221      3322221112222    2899999999988772 


Q ss_pred             -CCCCCCccchhHHHHHHHhCCeeeEEEEEeCCCC--EEEEEEc
Q 044216          102 -NSCNAGKVCGHYTHVVWRNSVRIGCAKFRCNYGG--TSIGCNY  142 (154)
Q Consensus       102 -~~~~~~~~~~~f~q~vw~~t~~vGCa~~~c~~~~--~~~vC~Y  142 (154)
                       ........++||++|+|.++++||||++.|.++.  .++||+|
T Consensus        81 ~~~~~~~~~~~h~~~ll~~~~~~iGca~~~~~~~~~~~~~vc~y  124 (124)
T PF00188_consen   81 SIFNSWMNSPGHFTNLLWPNTTRIGCAVANCPNGKNNYYWVCNY  124 (124)
T ss_dssp             TEESSTTSTCHHHHHHT-TT--EEEEEEEEETTSSSEEEEEEEE
T ss_pred             hhhhccCCchhhhhhhhcCCCCEEEEEEEEeCCCCeeEEEEEEC
Confidence             2222345689999999999999999999998875  9999998

Members are most often secreted and have an extracellular endocrine or paracrine function and are involved in processes including the regulation of extracellular matrix and branching morphogenesis, potentially as either proteases or protease inhibitors; in ion channel regulation in fertility; as tumour suppressor or pro-oncogenic genes in tissues including the prostate; and in cell-cell adhesion during fertilisation. The overall protein structural conservation within the CAP superfamily results in fundamentally similar functions for the CAP domain in all members, yet the diversity outside of this core region dramatically alters the target specificity and, thus, the biological consequences []. The Ca++-chelating function [] would fit with the various signalling processes (e.g. the CRISP proteins) that members of this family are involved in, and also the sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how Q91055 from SWISSPROT blocks the Ca++ transporting ryanodine receptors. This entry represents the CAP domain common to all members of the CAP superfamily. The CAP domain forms a unique 3 layer alpha-beta-alpha fold with some, though not all, of the structural elements found in proteases [].; PDB: 3U3N_C 3U3U_C 3U3L_C 1U53_A 1RC9_A 1SMB_A 3NT8_B 1QNX_A 1WVR_A 3Q2U_A ....

>TIGR02909 spore_YkwD uncharacterized protein, YkwD family

Probab=99.65  E-value=3.2e-15  Score=102.41  Aligned_cols=97  Identities=24%  Similarity=0.292  Sum_probs=79.1

Q ss_pred             chHHHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhhhcCCC--------------------------ceeeccCCC
Q 044216           28 DFPQDYVNAHNAARAQVGVNPVKWDESIAAFARSYASQQIASCNL--------------------------NLAGSSGNL   81 (154)
Q Consensus        28 ~~~~~il~~hN~~R~~~~m~~L~Wd~~La~~Aq~~a~~~~~~c~~--------------------------ni~~~~~~~   81 (154)
                      ++++++|+.||.+|..++.++|+||++|+..|+.||+.++..+..                          ||..+  ..
T Consensus         3 ~~e~~~l~~iN~~R~~~Gl~pL~~~~~L~~~A~~hA~~ma~~~~~~H~~~~~~~~~~r~~~~g~~~~~~gENi~~g--~~   80 (127)
T TIGR02909         3 AEEKRVVELVNAERAKNGLKPLKADPELSKVARLKSEDMRDKNYFSHTSPTYGSPFDMMKKFGISYRMAGENIAYG--NS   80 (127)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCccCHHHHHHHHHHHHHHHhCCcccccCCCCCCHHHHHHHcCCCcccceeeeecc--CC
Confidence            467889999999999999999999999999999999999854322                          33322  23


Q ss_pred             ChHHHHHHHHhhhccCCCCCCCCCCCccchhHHHHHHHhCCeeeEEEEEeCCCCEEEEEEc
Q 044216           82 SGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKFRCNYGGTSIGCNY  142 (154)
Q Consensus        82 ~~~~~v~~W~~e~~~y~~~~~~~~~~~~~~~f~q~vw~~t~~vGCa~~~c~~~~~~~vC~Y  142 (154)
                      .+..+++.|++.                .+|+.+|+|++.+++|||++.+.+|+.+.|-.|
T Consensus        81 ~~~~~v~~W~~S----------------~gH~~nil~~~~~~~Gvg~~~~~~g~~y~~q~F  125 (127)
T TIGR02909        81 TVEAVHNAWMNS----------------PGHRANILNPNYTEIGVGYVEGGSGGIYWTQMF  125 (127)
T ss_pred             CHHHHHHHHHcC----------------HhHHHHHcCCCcCeEeEEEEeCCCCCeEEEEEe
Confidence            677888999742                589999999999999999999887766666544

Members of this protein family represent a subset of those belonging to Pfam family pfam00188 (SCP-like extracellular protein). Based on currently cuttoffs for this model, all member proteins are found in Bacteria capable of endospore formation. Members include a named but uncharacterized protein, YkwD of Bacillus subtilis. Only the C-terminal region is well-conserved and is included in the seed alignment for this model. Three members of this family have an N-terminal domain homologous to the spore coat assembly protein SafA.

>cd05379 SCP_bacterial SCP_bacterial: SCP-like extracellular protein domain, as found in bacteria and archaea

Probab=99.46  E-value=9.5e-13  Score=88.46  Aligned_cols=94  Identities=26%  Similarity=0.345  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhhhcCCC--------------------------ceeeccCCCChH
Q 044216           31 QDYVNAHNAARAQVGVNPVKWDESIAAFARSYASQQIASCNL--------------------------NLAGSSGNLSGA   84 (154)
Q Consensus        31 ~~il~~hN~~R~~~~m~~L~Wd~~La~~Aq~~a~~~~~~c~~--------------------------ni~~~~~~~~~~   84 (154)
                      +.+++.+|.+|..+++++|+||.+|+..|+.+|+.++.....                          |+..+  ...+.
T Consensus         2 ~~~~~~iN~~R~~~gl~pl~~~~~l~~~A~~~a~~~~~~~~~~h~~~~~~~~~~~~~~~g~~~~~~~eni~~~--~~~~~   79 (122)
T cd05379           2 QEALELINAYRAQNGLPPLTWDPALAAAAQAHARDMAANGYFSHTGPDGSSPFDRARAAGYPYSSAGENIAYG--YSTAE   79 (122)
T ss_pred             hHHHHHHHHHHHHcCCCCCccChHHHHHHHHHHHHHHhcCccCCcCCCCCCHHHHHHHcCCCcCccchhhccc--CCCHH
Confidence            578999999999999999999999999999999998733221                          11111  11578


Q ss_pred             HHHHHHHhhhccCCCCCCCCCCCccchhHHHHHHHhCCeeeEEEEEeCCCCEEEEEEc
Q 044216           85 DVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKFRCNYGGTSIGCNY  142 (154)
Q Consensus        85 ~~v~~W~~e~~~y~~~~~~~~~~~~~~~f~q~vw~~t~~vGCa~~~c~~~~~~~vC~Y  142 (154)
                      ++++.|+++                .+|+.+|+++..+++|||+....++..+.|..|
T Consensus        80 ~~~~~w~~~----------------~~H~~~ll~~~~~~~Gvg~~~~~~~~~y~~~~f  121 (122)
T cd05379          80 AAVDGWMNS----------------PGHRANILNPDYTEVGVGVAYGGDGGYYWVQVF  121 (122)
T ss_pred             HHHHHHhCC----------------HhHHHHHcCCCcceeeEEEEeCCCCCeEEEEec
Confidence            889999743                679999999999999999999877767777665

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. Little is known about the biological roles of the bacterial and archaeal SCP domains.

>COG2340 Uncharacterized protein with SCP/PR1 domains [Function unknown]

Probab=98.70  E-value=1.1e-07  Score=70.24  Aligned_cols=44  Identities=27%  Similarity=0.483  Sum_probs=40.4

Q ss_pred             CCchHHHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhhhc
Q 044216           26 AQDFPQDYVNAHNAARAQVGVNPVKWDESIAAFARSYASQQIAS   69 (154)
Q Consensus        26 ~~~~~~~il~~hN~~R~~~~m~~L~Wd~~La~~Aq~~a~~~~~~   69 (154)
                      .+++.+.+++.+|++|..+++++|+||.+|+..|+.+++.++..
T Consensus        77 ~~~~~~~~~~~~N~~R~~~~l~~L~~n~~L~~~A~~~a~~m~~~  120 (207)
T COG2340          77 LAQFEKAVVAETNQERAKHGLPPLAWNATLAKAARNHARDMAKN  120 (207)
T ss_pred             cchhHHHHHHHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHc
Confidence            45778889999999999999999999999999999999988853

>PF11054 Surface_antigen: Sporozoite TA4 surface antigen; InterPro: IPR021288 This family of proteins is a Eukaryotic family of surface antigens

Probab=90.83  E-value=2.2  Score=32.26  Aligned_cols=124  Identities=15%  Similarity=0.173  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHHHhhCCCC----------Ccc-c-CHHHHHHHHHHHHhhh---hcCCC--------------ceeecc--
Q 044216           30 PQDYVNAHNAARAQVGVN----------PVK-W-DESIAAFARSYASQQI---ASCNL--------------NLAGSS--   78 (154)
Q Consensus        30 ~~~il~~hN~~R~~~~m~----------~L~-W-d~~La~~Aq~~a~~~~---~~c~~--------------ni~~~~--   78 (154)
                      .-++|+..|..|...++.          +|. . +.+| .....|-+-|.   ..-..              .....+  
T Consensus        35 ~~~CL~E~NaaReAAGL~~F~~A~~~~~~Lp~~~~~e~-~~~t~W~~iC~~l~pt~~~~~~~~~~~~pf~~GTyAf~~lt  113 (254)
T PF11054_consen   35 SVECLSEMNAAREAAGLANFTEATSDDQKLPEPGSEEL-TDDTLWKKICEHLIPTQAEPAAEASKLNPFKDGTYAFKSLT  113 (254)
T ss_pred             chhHHHHHHHHHHhcCchhhHhhcCCcccCCCCCchhc-cchhhHHHHHHHhcCCCCcchhhccccCcCCCCceEeeecc
Confidence            467999999999998832          111 2 2333 55567777554   11000              122222  


Q ss_pred             -CCCChHHHHHHHHhhhccCCCCCCCCC------CCccchhHHHHHHHhCCe-eeEEEEEeCCC----------------
Q 044216           79 -GNLSGADVVGLWVSEKADYDYNSNSCN------AGKVCGHYTHVVWRNSVR-IGCAKFRCNYG----------------  134 (154)
Q Consensus        79 -~~~~~~~~v~~W~~e~~~y~~~~~~~~------~~~~~~~f~q~vw~~t~~-vGCa~~~c~~~----------------  134 (154)
                       +..+..++|+.|-...++++--.++..      ++.+.-.|..+-..+... .-|.+..|...                
T Consensus       114 ~~~~dCk~aVdYWKaafknF~glPPs~~~~~~lYndqdnVSFVALYNPs~~atAdC~vvTCt~tt~~~~~~~~~~~d~~~  193 (254)
T PF11054_consen  114 DEKPDCKEAVDYWKAAFKNFTGLPPSKTAANKLYNDQDNVSFVALYNPSSSATADCRVVTCTQTTSNTAGGSRLQGDSDS  193 (254)
T ss_pred             CCCCChHHHHHHHHHHHhhcCCCCCChhhccccccCCcceeEEEEeCCCCCCcceeEEEeCCCCCccCCCcccccCCCcc
Confidence             345789999999887777654222221      122223334444433332 45999999541                


Q ss_pred             ----CEEEEEEcCCCCc-cCCCCCC
Q 044216          135 ----GTSIGCNYASPGN-VVGVKPY  154 (154)
Q Consensus       135 ----~~~~vC~Y~p~gn-~~g~~~Y  154 (154)
                          ++.++|.-.|..- ..|..||
T Consensus       194 ~~~~gyAliCkT~P~Al~~~~saPF  218 (254)
T PF11054_consen  194 ESKTGYALICKTMPAALASDGSAPF  218 (254)
T ss_pred             cccceEEEEEecCchhhcCCCCCCC
Confidence                5789999999655 5566665

One of the better characterised members of the family is the sporulated TA4 antigen. The TA4 gene encodes a single polypeptide of 25 kDa which contains a 17 and a 8kDa polypeptide [].

>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins

Probab=88.11  E-value=0.27  Score=31.89  Aligned_cols=23  Identities=30%  Similarity=0.153  Sum_probs=9.8

Q ss_pred             CCCCCcchHHHHHHHHHHHhhcCC
Q 044216            1 MAFSKDIPSLVLFCLMGLALALPS   24 (154)
Q Consensus         1 ~~~~~~~~~l~~l~~~~~~~~~~~   24 (154)
                      |+ |.++++|.++|+++|++.+..
T Consensus         1 Ma-SK~~llL~l~LA~lLlisSev   23 (95)
T PF07172_consen    1 MA-SKAFLLLGLLLAALLLISSEV   23 (95)
T ss_pred             Cc-hhHHHHHHHHHHHHHHHHhhh
Confidence            55 444444444443444444333

Some of them may be involved in resistance to environmental stress [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	154
1cfe_A	135	P14a, Nmr, 20 Structures Length = 135		1e-32
3q2r_A	205	Crystal Structure Of Sglipr1 Soaked With Zinc Chlor		5e-11
4aiw_A	154	Gapr-1 With Bound Inositol Hexakisphosphate Length		7e-11
1smb_A	154	Crystal Structure Of Golgi-Associated Pr-1 Protein		1e-10
2dda_A	211	Crystal Structure Of Pseudechetoxin From Pseudechis		9e-09
2ddb_A	210	Crystal Structure Of Pseudecin From Pseudechis Porp		3e-08
1rc9_A	221	Crystal Structure Of Stecrisp, A Member Of Crisp Fa		8e-08
1wvr_A	221	Crystal Structure Of A Crisp Family Ca-Channel Bloc		2e-07
2vzn_A	218	Crystal Structure Of The Major Allergen From Fire A		8e-07
1xta_A	221	Crystal Structure Of Natrin, A Snake Venom Crisp Fr		9e-06
1xx5_A	221	Crystal Structure Of Natrin From Naja Atra Snake Ve		2e-05

>pdb|1CFE|A Chain A, P14a, Nmr, 20 Structures Length = 135

Iteration: 1
 Score =  135 bits (339), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 67/134 (50%), Positives = 86/134 (64%), Gaps = 7/134 (5%)
Query: 27  QDFPQDYVNAHNAARAQVGVNPVKWDESIAAFARSYASQQIASCNL-------NLAGSSG 79
           Q+ PQDY+  HN ARAQVGV P+ WD ++A+ A++YA+ +   CNL       NLA   G
Sbjct: 1   QNSPQDYLAVHNDARAQVGVGPMSWDANLASRAQNYANSRAGDCNLIHSGAGENLAKGGG 60
Query: 80  NLSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKFRCNYGGTSIG 139
           + +G   V LWVSE+  Y+Y +N C  GK C HYT VVWRNSVR+GC + RCN G   I 
Sbjct: 61  DFTGRAAVQLWVSERPSYNYATNQCVGGKKCRHYTQVVWRNSVRLGCGRARCNNGWWFIS 120
Query: 140 CNYASPGNVVGVKP 153
           CNY   GN +G +P
Sbjct: 121 CNYDPVGNWIGQRP 134

>pdb|3Q2R|A Chain A, Crystal Structure Of Sglipr1 Soaked With Zinc Chloride Length = 205

Iteration: 1
 Score = 63.5 bits (153), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 64/152 (42%), Gaps = 33/152 (21%)
Query: 27  QDFPQDYVNAHNAARAQVGVNP-----VKWDESIAAFARSYASQQIASCNLNL------- 74
           +DF +D V  HN  R++V         + WD ++A  A+++AS    S N  L       
Sbjct: 16  EDFIKDCVRIHNKFRSEVKPTASDMLYMTWDPALAQIAKAWASNCQFSHNTRLKPPHKLH 75
Query: 75  -----------AGSSGNLSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVR 123
                       GS    S +  +  W  E  DYD+ +  C   KVCGHYT VVW +S +
Sbjct: 76  PNFTSLGENIWTGSVPIFSVSSAITNWYDEIQDYDFKTRICK--KVCGHYTQVVWADSYK 133
Query: 124 IGCAKFRCNY--------GGTSIGCNYASPGN 147
           +GCA   C           G    CNY   GN
Sbjct: 134 VGCAVQFCPKVSGFDALSNGAHFICNYGPGGN 165

>pdb|4AIW|A Chain A, Gapr-1 With Bound Inositol Hexakisphosphate Length = 154

Iteration: 1
 Score = 63.2 bits (152), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 69/139 (49%), Gaps = 15/139 (10%)
Query: 24  SRAQDFPQDYVNAHNAARAQVGVNPVKWDESIAAFARSY----ASQQI---------ASC 70
           S ++ F  + + AHN  R + GV P+K  +++   A+ Y    AS +I           C
Sbjct: 4   SASKQFHNEVLKAHNEYRQKHGVPPLKLXKNLNREAQQYSEALASTRILKHSPESSRGQC 63
Query: 71  NLNLAGSSGNLSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKFR 130
             NLA +S + +G +V   W SE  +Y++      +G   GH+T +VW+N+ ++G  K  
Sbjct: 64  GENLAWASYDQTGKEVADRWYSEIKNYNFQQPGFTSG--TGHFTAMVWKNTKKMGVGKAS 121
Query: 131 CNYGGTSIGCNYASPGNVV 149
            + G + +   Y   GNVV
Sbjct: 122 ASDGSSFVVARYFPAGNVV 140

>pdb|1SMB|A Chain A, Crystal Structure Of Golgi-Associated Pr-1 Protein Length = 154

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 17/140 (12%)
Query: 24  SRAQDFPQDYVNAHNAARAQVGVNPVKWDESIAAFARSYASQQIASCNL----------- 72
           S ++ F  + + AHN  R + GV P+K  +++   A+ Y S+ +AS  +           
Sbjct: 4   SASKQFHNEVLKAHNEYRQKHGVPPLKLXKNLNREAQQY-SEALASTRILKHSPESSRGQ 62
Query: 73  ---NLAGSSGNLSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKF 129
              NLA +S + +G +V   W SE  +Y++      +G   GH+T +VW+N+ ++G  K 
Sbjct: 63  XGENLAWASYDQTGKEVADRWYSEIKNYNFQQPGFTSG--TGHFTAMVWKNTKKMGVGKA 120
Query: 130 RCNYGGTSIGCNYASPGNVV 149
             + G + +   Y   GNVV
Sbjct: 121 SASDGSSFVVARYFPAGNVV 140

>pdb|2DDA|A Chain A, Crystal Structure Of Pseudechetoxin From Pseudechis Australis Length = 211

Iteration: 1
 Score = 55.8 bits (133), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 62/145 (42%), Gaps = 18/145 (12%)
Query: 24  SRAQDFPQDYVNAHNAARAQVGVN-----PVKWDESIAAFARSYASQQIAS--------- 69
           S  +++ ++ V+ HNA R  V         +KW+   A  A+ +A++   +         
Sbjct: 1   SNKKNYQKEIVDKHNALRRSVKPTARNMLQMKWNSRAAQNAKRWANRCTFAHSPPNKRTV 60
Query: 70  ----CNLNLAGSSGNLSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIG 125
               C  N+  SS     + VV  W  E  ++ Y   +   G V GHYT VVW  S  IG
Sbjct: 61  GKLRCGENIFMSSQPFPWSGVVQAWYDEIKNFVYGIGAKPPGSVIGHYTQVVWYKSYLIG 120
Query: 126 CAKFRCNYGGTSIGCNYASPGNVVG 150
           CA  +C+       C Y   GN+ G
Sbjct: 121 CASAKCSSSKYLYVCQYCPAGNIRG 145

>pdb|2DDB|A Chain A, Crystal Structure Of Pseudecin From Pseudechis Porphyriacus Length = 210

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 60/142 (42%), Gaps = 18/142 (12%)
Query: 27  QDFPQDYVNAHNAARAQVGVN-----PVKWDESIAAFARSYASQQIAS------------ 69
           +++ ++ V+ HNA R  V         +KW+   A  A+ +A +   +            
Sbjct: 3   KNYQKEIVDKHNALRRSVKPTARNMLQMKWNSHAAQNAKRWADRCTFAHSPPNTRTVGKL 62
Query: 70  -CNLNLAGSSGNLSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAK 128
            C  N+  SS     + VV  W  E  ++ Y   +   G V GHYT VVW  S  IGCA 
Sbjct: 63  RCGENIFMSSQPFPWSGVVQAWYDEIKNFVYGIGAKPPGSVIGHYTQVVWYKSHLIGCAS 122
Query: 129 FRCNYGGTSIGCNYASPGNVVG 150
            +C+       C Y   GN+ G
Sbjct: 123 AKCSSSKYLYVCQYCPAGNIRG 144

>pdb|1RC9|A Chain A, Crystal Structure Of Stecrisp, A Member Of Crisp Family From Trimeresurus Stejnegeri Refined At 1.6 Angstroms Resolution: Structual Relationship Of The Two Domains Length = 221

Iteration: 1
 Score = 52.8 bits (125), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 58/148 (39%), Gaps = 24/148 (16%)
Query: 25  RAQDFPQDYVNAHNAARAQVGVNP-------VKWDESIAAFARSYASQQIAS-------- 69
           R  +   + V+ HN+ R    VNP       ++W    A  A  +A + I S        
Sbjct: 10  RKPEIQNEIVDLHNSLRR--SVNPTASNMLRMEWYPEAADNAERWAYRCIESHSSYESRV 67
Query: 70  -----CNLNLAGSSGNLSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRI 124
                C  N+  S   +   D++  W  E  D+ Y   +     V GHYT +VW  S RI
Sbjct: 68  IEGIKCGENIYMSPYPMKWTDIIHAWHDEYKDFKYGVGADPPNAVTGHYTQIVWYKSYRI 127
Query: 125 GCAKFRCNYGGTS--IGCNYASPGNVVG 150
           GCA   C     S    C Y   GN +G
Sbjct: 128 GCAAAYCPSSPYSYFFVCQYCPAGNFIG 155

>pdb|1WVR|A Chain A, Crystal Structure Of A Crisp Family Ca-Channel Blocker Derived From Snake Venom Length = 221

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 60/148 (40%), Gaps = 24/148 (16%)
Query: 25  RAQDFPQDYVNAHNAARAQVGVNP-------VKWDESIAAFARSYASQQIAS-------- 69
           R  +   + ++ HN+ R    VNP       ++W    AA A  +A + I S        
Sbjct: 10  RKPEIQNEIIDLHNSLRR--SVNPTASNMLKMEWYPEAAANAERWAYRCIESHSSRDSRV 67
Query: 70  -----CNLNLAGSSGNLSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRI 124
                C  N+  ++      D++  W  E  D+ Y   +  +  V GHYT +VW  S R 
Sbjct: 68  IGGIKCGENIYMATYPAKWTDIIHAWHGEYKDFKYGVGAVPSDAVIGHYTQIVWYKSYRA 127
Query: 125 GCAKFRCNYGGTSIG--CNYASPGNVVG 150
           GCA   C     S    C Y   GN++G
Sbjct: 128 GCAAAYCPSSKYSYFYVCQYCPAGNIIG 155

>pdb|2VZN|A Chain A, Crystal Structure Of The Major Allergen From Fire Ant Venom, Sol I 3 Length = 218

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 68/163 (41%), Gaps = 43/163 (26%)
Query: 34  VNAHNAARAQV----------GVNP-------VKWDESIAAFARSYASQ---QIASC--- 70
           VN HN  R +V          G  P       + WD  +A  A+ +A+Q   +  +C   
Sbjct: 47  VNKHNELRQRVASGKEMRGTNGPQPPAVKMPNLTWDPELATIAQRWANQCTFEHDACRNV 106
Query: 71  -------NLNLAGSSGNLSGA--DVVGLWVSEKADYD------YNSNSCNAGKVCGHYTH 115
                  N+    SSG       +++ LW +E  D+D      + S+     KV GHYT 
Sbjct: 107 ERFAVGQNIAATSSSGKNKSTPNEMILLWYNEVKDFDNRWISSFPSDDNILMKV-GHYTQ 165
Query: 116 VVWRNSVRIGCAKFRC----NYGGTSIGCNYASPGNVVGVKPY 154
           +VW  + +IGC +       N+    + CNY   GNV+G   Y
Sbjct: 166 IVWAKTTKIGCGRIMFKEPDNWTKHYLVCNYGPAGNVLGAPIY 208

>pdb|1XTA|A Chain A, Crystal Structure Of Natrin, A Snake Venom Crisp From Taiwan Cobra (Naja Atra) Length = 221

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 60/147 (40%), Gaps = 20/147 (13%)
Query: 24  SRAQDFPQDYVNAHNAARAQVGVN-----PVKWDESIAAFARSYASQ------------- 65
           +R +   ++ V+ HN+ R +V         ++W    A+ A  +A+              
Sbjct: 9   TRRKKKQKEIVDLHNSLRRRVSPTASNMLKMEWYPEAASNAERWANTCSLNHSPDNLRVL 68
Query: 66  QIASCNLNLAGSSGNLSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIG 125
           +   C  ++  SS   +  +++ LW  E  ++ Y   +   G V GHYT +VW  + R G
Sbjct: 69  EGIQCGESIYMSSNARTWTEIIHLWHDEYKNFVYGVGASPPGSVTGHYTQIVWYQTYRAG 128
Query: 126 CAKFRCNYGGTSIG--CNYASPGNVVG 150
           CA   C     S    C Y   GN  G
Sbjct: 129 CAVSYCPSSAWSYFYVCQYCPSGNFQG 155

>pdb|1XX5|A Chain A, Crystal Structure Of Natrin From Naja Atra Snake Venom Length = 221

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 60/147 (40%), Gaps = 20/147 (13%)
Query: 24  SRAQDFPQDYVNAHNAARAQVGVN-----PVKWDESIAAFARSYASQ------------- 65
           +R +   ++ V+ HN+ R +V         ++W    A+ A  +A+              
Sbjct: 9   TRRKKKQKEIVDLHNSLRRRVSPTASNMLKMEWYPEAASNAERWANTCSLNHSPDNLRVL 68
Query: 66  QIASCNLNLAGSSGNLSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIG 125
           +   C  ++  SS   +  +++ LW  E  ++ Y   +   G V GHYT +VW  + R G
Sbjct: 69  EGIQCGESIYMSSNARTWTEIIHLWHDEYKNFVYGVGANPPGSVTGHYTQIVWYQTYRAG 128
Query: 126 CAKFRCNYGGTSIG--CNYASPGNVVG 150
           CA   C     S    C Y   GN  G
Sbjct: 129 CAVSYCPSSAWSYFYVCQYCPSGNFQG 155

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	154
1cfe_A	135	Pathogenesis-related protein P14A; PR-1 proteins,	2e-58
4aiw_A	154	Golgi-associated plant pathogenesis-related prote;	1e-52
2ddb_A	210	Pseudecin, channel blocker; crisp, snake venom, CN	5e-42
1xta_A	221	Natrin 1; crisp, serine protease, ION channel bloc	5e-39
1qnx_A	209	VES V 5, antigen 5; allergen, vespid venom; 1.90A	1e-35
3q2u_A	205	Glioma pathogenesis-related protein 1; crisp, memb	4e-35
1u53_A	196	Secreted protein Asp-2; antibiotic; 1.56A {Necator	2e-34
2vzn_A	218	Venom allergen 3; major FIRE ANT allergen, SOL I 3	1e-31
3nt8_A	424	Ancylostoma secreted protein 1; pathogenesis relat	4e-28
3nt8_A	424	Ancylostoma secreted protein 1; pathogenesis relat	1e-27
3u3l_C	233	Tablysin 15; CAP domain, alphavbeta3 integrin, sal	3e-18
3s6s_A	206	AC-Asp-7; pathogenesis-related protein, SCP/TAPS,	2e-09

>1cfe_A Pathogenesis-related protein P14A; PR-1 proteins, plant defense; NMR {Solanum lycopersicum} SCOP: d.111.1.1 Length = 135

 Score =  177 bits (450), Expect = 2e-58
 Identities = 68/135 (50%), Positives = 87/135 (64%), Gaps = 7/135 (5%)

Query: 27  QDFPQDYVNAHNAARAQVGVNPVKWDESIAAFARSYASQQIASCNL-------NLAGSSG 79
           Q+ PQDY+  HN ARAQVGV P+ WD ++A+ A++YA+ +   CNL       NLA   G
Sbjct: 1   QNSPQDYLAVHNDARAQVGVGPMSWDANLASRAQNYANSRAGDCNLIHSGAGENLAKGGG 60

Query: 80  NLSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKFRCNYGGTSIG 139
           + +G   V LWVSE+  Y+Y +N C  GK C HYT VVWRNSVR+GC + RCN G   I 
Sbjct: 61  DFTGRAAVQLWVSERPSYNYATNQCVGGKKCRHYTQVVWRNSVRLGCGRARCNNGWWFIS 120

Query: 140 CNYASPGNVVGVKPY 154
           CNY   GN +G +PY
Sbjct: 121 CNYDPVGNWIGQRPY 135

>4aiw_A Golgi-associated plant pathogenesis-related prote; lipid-binding protein, golgi apparatus, myristate; HET: I6P; 1.50A {Homo sapiens} PDB: 1smb_A* Length = 154

 Score =  163 bits (414), Expect = 1e-52
 Identities = 38/144 (26%), Positives = 69/144 (47%), Gaps = 15/144 (10%)

Query: 24  SRAQDFPQDYVNAHNAARAQVGVNPVKWDESIAAFARSYASQQIASCNL----------- 72
           S ++ F  + + AHN  R + GV P+K  +++   A+ Y+    ++  L           
Sbjct: 4   SASKQFHNEVLKAHNEYRQKHGVPPLKLCKNLNREAQQYSEALASTRILKHSPESSRGQC 63

Query: 73  --NLAGSSGNLSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKFR 130
             NLA +S + +G +V   W SE  +Y++      +G   GH+T +VW+N+ ++G  K  
Sbjct: 64  GENLAWASYDQTGKEVADRWYSEIKNYNFQQPGFTSG--TGHFTAMVWKNTKKMGVGKAS 121

Query: 131 CNYGGTSIGCNYASPGNVVGVKPY 154
            + G + +   Y   GNVV    +
Sbjct: 122 ASDGSSFVVARYFPAGNVVNEGFF 145

>2ddb_A Pseudecin, channel blocker; crisp, snake venom, CNG channel, toxin; 1.90A {Pseudechis porphyriacus} PDB: 2epf_A 2dda_A Length = 210

 Score =  138 bits (348), Expect = 5e-42
 Identities = 41/149 (27%), Positives = 63/149 (42%), Gaps = 20/149 (13%)

Query: 26  AQDFPQDYVNAHNAARAQV-----GVNPVKWDESIAAFARSYASQQIASCNL-------- 72
            +++ ++ V+ HNA R  V      +  +KW+   A  A+ +A +   + +         
Sbjct: 2   KKNYQKEIVDKHNALRRSVKPTARNMLQMKWNSHAAQNAKRWADRCTFAHSPPNTRTVGK 61

Query: 73  -----NLAGSSGNLSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCA 127
                N+  SS     + VV  W  E  ++ Y   +   G V GHYT VVW  S  IGCA
Sbjct: 62  LRCGENIFMSSQPFPWSGVVQAWYDEIKNFVYGIGAKPPGSVIGHYTQVVWYKSHLIGCA 121

Query: 128 KFRCNYGGTSIGCNYASPGNVVG--VKPY 154
             +C+       C Y   GN+ G    PY
Sbjct: 122 SAKCSSSKYLYVCQYCPAGNIRGSIATPY 150

>1xta_A Natrin 1; crisp, serine protease, ION channel blocking, cobra, toxin; 1.58A {Naja atra} PDB: 2giz_A 1xx5_A 3mz8_A 1rc9_A 1wvr_A Length = 221

 Score =  130 bits (329), Expect = 5e-39
 Identities = 38/156 (24%), Positives = 63/156 (40%), Gaps = 22/156 (14%)

Query: 21  ALPSRAQDFPQDYVNAHNAARAQVG-----VNPVKWDESIAAFARSYASQQIA------- 68
           +  +R +   ++ V+ HN+ R +V      +  ++W    A+ A  +A+           
Sbjct: 6   SESTRRKKKQKEIVDLHNSLRRRVSPTASNMLKMEWYPEAASNAERWANTCSLNHSPDNL 65

Query: 69  ------SCNLNLAGSSGNLSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSV 122
                  C  ++  SS   +  +++ LW  E  ++ Y   +   G V GHYT +VW  + 
Sbjct: 66  RVLEGIQCGESIYMSSNARTWTEIIHLWHDEYKNFVYGVGASPPGSVTGHYTQIVWYQTY 125

Query: 123 RIGCAKFRCNYGGTS--IGCNYASPGNVVG--VKPY 154
           R GCA   C     S    C Y   GN  G    PY
Sbjct: 126 RAGCAVSYCPSSAWSYFYVCQYCPSGNFQGKTATPY 161

>1qnx_A VES V 5, antigen 5; allergen, vespid venom; 1.90A {Vespula vulgaris} SCOP: d.111.1.1 Length = 209

 Score =  121 bits (306), Expect = 1e-35
 Identities = 33/164 (20%), Positives = 58/164 (35%), Gaps = 36/164 (21%)

Query: 27  QDFPQDYVNAHNAARAQVGV-----------------NPVKWDESIAAFARSYASQQIAS 69
           +   QD +  HN  R ++                     + W++ +A  A+ +A+Q    
Sbjct: 43  KQEKQDILKEHNDFRQKIARGLETRGNPGPQPPAKNMKNLVWNDELAYVAQVWANQCQYG 102

Query: 70  CNL-----------NLAGSSGNLSG----ADVVGLWVSEKADYDYNSNSC-NAGKVCGHY 113
            +            N+A +    +       +V +W  E  DY+       N     GHY
Sbjct: 103 HDTCRDVAKYQVGQNVALTGSTAAKYDDPVKLVKMWEDEVKDYNPKKKFSGNDFLKTGHY 162

Query: 114 THVVWRNSVRIGCAKFRC---NYGGTSIGCNYASPGNVVGVKPY 154
           T +VW N+  +GC   +     +    + CNY   GN    + Y
Sbjct: 163 TQMVWANTKEVGCGSIKYIQEKWHKHYLVCNYGPSGNFKNEELY 206

>3q2u_A Glioma pathogenesis-related protein 1; crisp, membrane protein; 1.85A {Homo sapiens} PDB: 3q2r_A Length = 205

 Score =  120 bits (302), Expect = 4e-35
 Identities = 50/169 (29%), Positives = 68/169 (40%), Gaps = 35/169 (20%)

Query: 18  LALALPS-RAQDFPQDYVNAHNAARAQVGV-----NPVKWDESIAAFARSYASQ------ 65
            A  LP    +DF +D V  HN  R++V         + WD ++A  A+++AS       
Sbjct: 6   FANILPDIENEDFIKDCVRIHNKFRSEVKPTASDMLYMTWDPALAQIAKAWASNCQFSHN 65

Query: 66  -----------QIASCNLNLA-GSSGNLSGADVVGLWVSEKADYDYNSNSCNAGKVCGHY 113
                         S   N+  GS    S +  +  W  E  DYD+ +  C   KVCGHY
Sbjct: 66  TRLKPPHKLHPNFTSLGENIWTGSVPIFSVSSAITNWYDEIQDYDFKTRICK--KVCGHY 123

Query: 114 THVVWRNSVRIGCAKFRCNYGGTSIG--------CNYASPGNVVGVKPY 154
           T VVW +S ++GCA   C                CNY   GN     PY
Sbjct: 124 TQVVWADSYKVGCAVQFCPKVSGFDALSNGAHFICNYGPGGN-YPTWPY 171

>1u53_A Secreted protein Asp-2; antibiotic; 1.56A {Necator americanus} Length = 196

 Score =  118 bits (297), Expect = 2e-34
 Identities = 32/164 (19%), Positives = 59/164 (35%), Gaps = 36/164 (21%)

Query: 26  AQDFPQDYVNAHNAARAQVGV-----------------NPVKWDESIAAFARSYASQQIA 68
           +++  Q ++  HN+ R+ V +                   + +D  +   A + A Q + 
Sbjct: 13  SEEARQKFLEMHNSLRSSVALGQAKDGAGGNAPKAAKMKTMAYDCEVEKTAMNNAKQCVF 72

Query: 69  SCNL---------NLAGSSG-----NLSGADVVGLWVSEKADYDYNSNSC----NAGKVC 110
             +          N+  SS        +       W  E A+     N         +  
Sbjct: 73  KHSQPNQRKGLGENIFMSSDSGMDKAKAAEQASKAWFGELAEKGVGQNLKLTGGLFSRGV 132

Query: 111 GHYTHVVWRNSVRIGCAKFRCNYGGTSIGCNYASPGNVVGVKPY 154
           GHYT +VW+ +V++GC    C+     + C Y   GN++G   Y
Sbjct: 133 GHYTQMVWQETVKLGCYVEACS-NMCYVVCQYGPAGNMMGKDIY 175

>2vzn_A Venom allergen 3; major FIRE ANT allergen, SOL I 3, secreted, cross- reactivity; 3.05A {Solenopsis invicta} Length = 218

 Score =  111 bits (280), Expect = 1e-31
 Identities = 40/169 (23%), Positives = 63/169 (37%), Gaps = 41/169 (24%)

Query: 27  QDFPQDYVNAHNAARAQVG-----------------VNPVKWDESIAAFARSYASQQIAS 69
                  VN HN  R +V                  +  + WD  +A  A+ +A+Q    
Sbjct: 40  DAEKDAIVNKHNELRQRVASGKEMRGTNGPQPPAVKMPNLTWDPELATIAQRWANQCTFE 99

Query: 70  CNL-----------NLAGSSG----NLSGADVVGLWVSEKADYDYNSNSC-----NAGKV 109
            +            N+A +S       +  +++ LW +E  D+D    S      N    
Sbjct: 100 HDACRNVERFAVGQNIAATSSSGKNKSTPNEMILLWYNEVKDFDNRWISSFPSDDNILMK 159

Query: 110 CGHYTHVVWRNSVRIGCAKFRC----NYGGTSIGCNYASPGNVVGVKPY 154
            GHYT +VW  + +IGC +       N+    + CNY   GNV+G   Y
Sbjct: 160 VGHYTQIVWAKTTKIGCGRIMFKEPDNWTKHYLVCNYGPAGNVLGAPIY 208

>3nt8_A Ancylostoma secreted protein 1; pathogenesis related-1 protein, cysteine-rich secretory PROT domain, immune system; 2.20A {Necator americanus} Length = 424

 Score =  106 bits (266), Expect = 4e-28
 Identities = 31/166 (18%), Positives = 53/166 (31%), Gaps = 39/166 (23%)

Query: 27  QDFPQDYVNAHNAARAQVGV-----------------NPVKWDESIAAFARSYASQ---- 65
                 +++ HN  R+ V                     + +D  + A A  + ++    
Sbjct: 235 DSVRDTFLSVHNEFRSSVARGLEPDALGGNAPKAAKMLKMVYDCEVEASAIRHGNKCVYQ 294

Query: 66  -----QIASCNLNLAGSSG-----NLSGADVVGLWVSEKADYDYNSNSC-------NAGK 108
                       N+  +S      N +      LW +E  +Y    ++            
Sbjct: 295 HSHGEDRPGLGENIYKTSVLKFDKNKAAKQASQLWWNELKEYGVGPSNVLTTALWNRPNM 354

Query: 109 VCGHYTHVVWRNSVRIGCAKFRCNYGGTSIGCNYASPGNVVGVKPY 154
             GHYT + W  + ++GCA   CN   T   C Y   GN +G   Y
Sbjct: 355 QIGHYTQMAWDTTYKLGCAVVFCN-DFTFGVCQYGPGGNYMGHVIY 399

>3nt8_A Ancylostoma secreted protein 1; pathogenesis related-1 protein, cysteine-rich secretory PROT domain, immune system; 2.20A {Necator americanus} Length = 424

 Score =  105 bits (262), Expect = 1e-27
 Identities = 21/157 (13%), Positives = 47/157 (29%), Gaps = 30/157 (19%)

Query: 27  QDFPQDYVNAHNAARAQVGVNPV----------------KWDESIAAFARSYAS------ 64
               Q +++ HN AR +V                      WD ++    +          
Sbjct: 34  DSDRQAFLDFHNNARRRVAKGLEDSNSGKLNPAKNMYKLSWDCAMEQQLQDAIQSCPSGF 93

Query: 65  -------QQIASCNLNLAGSSGNLSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVV 117
                  Q   S + +      ++     +  W S         ++   G     ++++V
Sbjct: 94  AGIQGVAQNTMSWSSSGGYPDPSVKIEPTLSGWWSGAKKNGVGPDNKYTGGGLFAFSNMV 153

Query: 118 WRNSVRIGCAKFRCNYGGTSIGCNYASPGNVVGVKPY 154
           +  + ++GCA   C     ++ C Y   G +     +
Sbjct: 154 YSETTKLGCAYKVCG-TKLAVSCIYNGVGYITNQPMW 189

>3u3l_C Tablysin 15; CAP domain, alphavbeta3 integrin, salivary gland, protein BI; HET: PLM CIT; 1.57A {Tabanus yao} PDB: 3u3n_C* 3u3u_C* Length = 233

 Score = 77.4 bits (190), Expect = 3e-18
 Identities = 23/164 (14%), Positives = 41/164 (25%), Gaps = 37/164 (22%)

Query: 27  QDFPQDYVNAHNAARAQVGV-----------NPVKWDESIAAFARSYASQQIASCNL--- 72
           ++   + ++  N  R  V               V WD  +A  A+ +    +   +    
Sbjct: 38  KEHRNEILSKINDVRDHVAKGSWGLPVAARMKVVVWDAELAGLAKRHTKGCVGETHACRN 97

Query: 73  ---------NLAGSSGNLSGA------DVVGLWVSEKADYDY----NSNSCNAGKVCGHY 113
                         SG+          D V     +K +       N             
Sbjct: 98  TERFWLPGQLNFKYSGDKLPRIKELIDDAVKKGHLQKHNITREIIENYRENGPNGDVKEL 157

Query: 114 THVVWRNSVRIGCAKFRCNYGGTS---IGCNYASPGNVVGVKPY 154
              +      +GC       G  +   + CN+ S  N  G   Y
Sbjct: 158 ALAISDRVTAVGCGLTTWEDGAKARALLTCNF-SSQNTRGRPVY 200

>3s6s_A AC-Asp-7; pathogenesis-related protein, SCP/TAPS, unknown function; 2.40A {Ancylostoma caninum} PDB: 3s6v_A 3s6u_A Length = 206

 Score = 53.2 bits (127), Expect = 2e-09
 Identities = 16/145 (11%), Positives = 35/145 (24%), Gaps = 27/145 (18%)

Query: 27  QDFPQDYVNAHNAARAQV------------GVNPVKWDESIAAFARSYASQQIASCNLNL 74
           + F +     HN  R ++             +  + +D  +   AR        +   + 
Sbjct: 16  RPFREAIDTFHNGLRQRIAKGEAEGYGPAREMYGLVYDCGLEEEARKEIKLPGYADLHHR 75

Query: 75  AGSSGNLSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKFRCNYG 134
             +  +          + E  +                   VV+  + R GC+       
Sbjct: 76  GVTRFSGDYEGSAISALKEILETFSAD--------KNSMRQVVYPKATRFGCSGRLRRNK 127

Query: 135 GTS-----IGCNYASPGNVVGVKPY 154
            T        C Y         + +
Sbjct: 128 KTGMRRMDWVCVYDKKPK--DGESF 150

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	154
4aiw_A	154	Golgi-associated plant pathogenesis-related prote;	100.0
1cfe_A	135	Pathogenesis-related protein P14A; PR-1 proteins,	100.0
2ddb_A	210	Pseudecin, channel blocker; crisp, snake venom, CN	100.0
1xta_A	221	Natrin 1; crisp, serine protease, ION channel bloc	100.0
1qnx_A	209	VES V 5, antigen 5; allergen, vespid venom; 1.90A	100.0
1u53_A	196	Secreted protein Asp-2; antibiotic; 1.56A {Necator	100.0
2vzn_A	218	Venom allergen 3; major FIRE ANT allergen, SOL I 3	100.0
3q2u_A	205	Glioma pathogenesis-related protein 1; crisp, memb	100.0
3u3l_C	233	Tablysin 15; CAP domain, alphavbeta3 integrin, sal	100.0
3nt8_A	424	Ancylostoma secreted protein 1; pathogenesis relat	100.0
3nt8_A	424	Ancylostoma secreted protein 1; pathogenesis relat	100.0
3s6s_A	206	AC-Asp-7; pathogenesis-related protein, SCP/TAPS,	99.97
4ifa_A	339	Extracellular protein containing A SCP domain; vac	99.34
4h0a_A	323	Uncharacterized protein; CAP protein family, cyste	98.91

>4aiw_A Golgi-associated plant pathogenesis-related prote; lipid-binding protein, golgi apparatus, myristate; HET: I6P; 1.50A {Homo sapiens} PDB: 1smb_A*

Probab=100.00  E-value=2.6e-43  Score=248.25  Aligned_cols=128  Identities=28%  Similarity=0.500  Sum_probs=117.6

Q ss_pred             CCCchHHHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhhhcCCC-------------ceeeccCCCChHHHHHHHH
Q 044216           25 RAQDFPQDYVNAHNAARAQVGVNPVKWDESIAAFARSYASQQIASCNL-------------NLAGSSGNLSGADVVGLWV   91 (154)
Q Consensus        25 ~~~~~~~~il~~hN~~R~~~~m~~L~Wd~~La~~Aq~~a~~~~~~c~~-------------ni~~~~~~~~~~~~v~~W~   91 (154)
                      .+++++++||+.||.+|+.|++++|+||.+|+..||+||++|+.+|..             ||+++..+..+.++|+.||
T Consensus         5 ~~~~f~~~iL~~HN~~R~~~~~~~L~wd~~La~~Aq~~A~~~a~~~~~~hs~~~~~~~~GeNl~~~~~~~~~~~~v~~W~   84 (154)
T 4aiw_A            5 ASKQFHNEVLKAHNEYRQKHGVPPLKLCKNLNREAQQYSEALASTRILKHSPESSRGQCGENLAWASYDQTGKEVADRWY   84 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHHHHHHHHHTCCCCCHHHHTTSSEEEEEEESSCCCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhhhcccccccccCCCCCCCeeeEecCCCCCHHHHHHHHH
Confidence            346789999999999999999999999999999999999999877764             8887776778999999999


Q ss_pred             hhhccCCCCCCCCCCCccchhHHHHHHHhCCeeeEEEEEeCCCCEEEEEEcCCCCccCCCCCC
Q 044216           92 SEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKFRCNYGGTSIGCNYASPGNVVGVKPY  154 (154)
Q Consensus        92 ~e~~~y~~~~~~~~~~~~~~~f~q~vw~~t~~vGCa~~~c~~~~~~~vC~Y~p~gn~~g~~~Y  154 (154)
                      +|..+|+|..+.+..  .++|||||||++|++||||++.|.++..++||+|+|+||+.|+.||
T Consensus        85 ~E~~~y~~~~~~~~~--~~gHfTQ~VW~~t~~vGCg~a~c~~~~~~vVC~Y~P~GN~~g~~~y  145 (154)
T 4aiw_A           85 SEIKNYNFQQPGFTS--GTGHFTAMVWKNTKKMGVGKASASDGSSFVVARYFPAGNVVNEGFF  145 (154)
T ss_dssp             GGGGGCCTTSCSCCT--TTHHHHHHHCTTCCEEEEEEEECTTSCEEEEEEEESCCCCCSTTHH
T ss_pred             HHhhhcccCCCCcCC--CcCCeeeeehhhhceeeeEEEEcCCCCEEEEEEEeCCCccCCccch
Confidence            999999999888764  4999999999999999999999999889999999999999998776

>1cfe_A Pathogenesis-related protein P14A; PR-1 proteins, plant defense; NMR {Solanum lycopersicum} SCOP: d.111.1.1

Probab=100.00  E-value=3.6e-43  Score=242.60  Aligned_cols=127  Identities=53%  Similarity=1.036  Sum_probs=117.6

Q ss_pred             chHHHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhhhcCCC-------ceeeccCCCChHHHHHHHHhhhccCCCC
Q 044216           28 DFPQDYVNAHNAARAQVGVNPVKWDESIAAFARSYASQQIASCNL-------NLAGSSGNLSGADVVGLWVSEKADYDYN  100 (154)
Q Consensus        28 ~~~~~il~~hN~~R~~~~m~~L~Wd~~La~~Aq~~a~~~~~~c~~-------ni~~~~~~~~~~~~v~~W~~e~~~y~~~  100 (154)
                      +.+++||+.||.+|+.++|++|+||++|+..||.||++|+.+|..       ||+++++..++.++|+.|++|..+|+|.
T Consensus         2 ~~~~~iL~~HN~~R~~~~~~~L~Wd~~La~~Aq~~A~~~a~~c~~~hs~~GENla~~~~~~~~~~~v~~W~~E~~~y~~~   81 (135)
T 1cfe_A            2 NSPQDYLAVHNDARAQVGVGPMSWDANLASRAQNYANSRAGDCNLIHSGAGENLAKGGGDFTGRAAVQLWVSERPSYNYA   81 (135)
T ss_dssp             CSHHHHHHHHHHHHHHTTCCCCEECSHHHHHHHHHHHHHTTTCCSCSCSSSBCCEECSSSCCHHHHHHHHHTTGGGEEGG
T ss_pred             cHHHHHHHHHHHHHHHcCCCccCcCHHHHHHHHHHHHHHhcCCCcccCCCCeEEEEecCCCCHHHHHHHHHhHHhhCCCC
Confidence            578999999999999999999999999999999999988877764       7777654568999999999999999999


Q ss_pred             CCCCCCCccchhHHHHHHHhCCeeeEEEEEeCCCCEEEEEEcCCCCccCCCCCC
Q 044216          101 SNSCNAGKVCGHYTHVVWRNSVRIGCAKFRCNYGGTSIGCNYASPGNVVGVKPY  154 (154)
Q Consensus       101 ~~~~~~~~~~~~f~q~vw~~t~~vGCa~~~c~~~~~~~vC~Y~p~gn~~g~~~Y  154 (154)
                      .+.+..++.++|||||||++|++||||++.|.++..++||+|+|+||+.|++||
T Consensus        82 ~~~~~~~~~~gHfTQ~vW~~t~~vGCa~~~c~~~~~~~VC~Y~p~GN~~g~~pY  135 (135)
T 1cfe_A           82 TNQCVGGKKCRHYTQVVWRNSVRLGCGRARCNNGWWFISCNYDPVGNWIGQRPY  135 (135)
T ss_dssp             GTEECSSSCCSSHHHHHCTTCCEEEEEEEECTTSSEEEEEECSSCCSCTTSCCC
T ss_pred             CCCcCCCCcccceeeeEEccCcEEeEEEEEeCCCCEEEEEEEeCCCCCCCCCCC
Confidence            988887788999999999999999999999987789999999999999999999

>2ddb_A Pseudecin, channel blocker; crisp, snake venom, CNG channel, toxin; 1.90A {Pseudechis porphyriacus} PDB: 2epf_A 2dda_A

Probab=100.00  E-value=2e-37  Score=228.14  Aligned_cols=128  Identities=32%  Similarity=0.578  Sum_probs=112.7

Q ss_pred             CchHHHHHHHHHHHHhhCC-----CCCcccCHHHHHHHHHHHHhhhhc-----CC--------CceeeccCCCChHHHHH
Q 044216           27 QDFPQDYVNAHNAARAQVG-----VNPVKWDESIAAFARSYASQQIAS-----CN--------LNLAGSSGNLSGADVVG   88 (154)
Q Consensus        27 ~~~~~~il~~hN~~R~~~~-----m~~L~Wd~~La~~Aq~~a~~~~~~-----c~--------~ni~~~~~~~~~~~~v~   88 (154)
                      +++++.||+.||.+|+.|+     |.+|+||++||..||.||++|...     |+        .||+.++....+.++|+
T Consensus         3 ~~~~~~iL~~HN~~R~~~~~~A~nM~~L~Wd~~La~~Aq~~A~~C~~~Hs~~~~r~~~~~~~GENl~~~~~~~~~~~av~   82 (210)
T 2ddb_A            3 KNYQKEIVDKHNALRRSVKPTARNMLQMKWNSHAAQNAKRWADRCTFAHSPPNTRTVGKLRCGENIFMSSQPFPWSGVVQ   82 (210)
T ss_dssp             -CHHHHHHHHHHHHHTTCSSCBSSCBCCEECHHHHHHHHHHHTTTCCSCCCGGGSEETTEECEEEEEEESSCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCccccCcccccCHHHHHHHHHHHhcCCCCCCCccccccCCCCCcceEEEEcCCCCHHHHHH
Confidence            4688999999999999996     779999999999999999988722     22        17776665557899999


Q ss_pred             HHHhhhccCCCCCCCCCCCccchhHHHHHHHhCCeeeEEEEEeCCCCEEEEEEcCCCCccCCC--CCC
Q 044216           89 LWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKFRCNYGGTSIGCNYASPGNVVGV--KPY  154 (154)
Q Consensus        89 ~W~~e~~~y~~~~~~~~~~~~~~~f~q~vw~~t~~vGCa~~~c~~~~~~~vC~Y~p~gn~~g~--~~Y  154 (154)
                      .||+|..+|+|+.+.+..+..++|||||||+++++||||++.|.++.+++||+|+|+||+.|+  +||
T Consensus        83 ~W~~E~~~y~~~~~~~~~~~~~gHfTQ~VW~~t~~vGCa~~~c~~~~~~~VC~Y~P~GN~~g~~~~pY  150 (210)
T 2ddb_A           83 AWYDEIKNFVYGIGAKPPGSVIGHYTQVVWYKSHLIGCASAKCSSSKYLYVCQYCPAGNIRGSIATPY  150 (210)
T ss_dssp             HHHGGGGGEETTTEESSTTSCCHHHHHHTCTTCCEEEEEEEEEETTEEEEEEEEESCSSSTTCTTCSS
T ss_pred             HHHHHhhhCCCCCCCCCCCCcccchhhhhhhhccEeeEEEEEcCCCCEEEEEEeeCCCCCCCCccCCC
Confidence            999999999999877666778999999999999999999999987778999999999999999  898

>1xta_A Natrin 1; crisp, serine protease, ION channel blocking, cobra, toxin; 1.58A {Naja atra} PDB: 2giz_A 1xx5_A 3mz8_A 1rc9_A 1wvr_A

Probab=100.00  E-value=5.2e-37  Score=227.56  Aligned_cols=130  Identities=28%  Similarity=0.519  Sum_probs=114.0

Q ss_pred             CCCchHHHHHHHHHHHHhhCC-----CCCcccCHHHHHHHHHHHHhhhhc-----CC--------CceeeccCCCChHHH
Q 044216           25 RAQDFPQDYVNAHNAARAQVG-----VNPVKWDESIAAFARSYASQQIAS-----CN--------LNLAGSSGNLSGADV   86 (154)
Q Consensus        25 ~~~~~~~~il~~hN~~R~~~~-----m~~L~Wd~~La~~Aq~~a~~~~~~-----c~--------~ni~~~~~~~~~~~~   86 (154)
                      ..+++++.||+.||.+|+.|.     |.+|+||++||..||.||++|...     |+        .||+.+.....+.++
T Consensus        10 ~~~~~~~~iL~~HN~~R~~~~~~A~nM~~L~Wd~~La~~Aq~~A~~C~~~Hs~~~~r~~~~~~~GENl~~~~~~~~~~~a   89 (221)
T 1xta_A           10 RRKKKQKEIVDLHNSLRRRVSPTASNMLKMEWYPEAASNAERWANTCSLNHSPDNLRVLEGIQCGESIYMSSNARTWTEI   89 (221)
T ss_dssp             TSHHHHHHHHHHHHHHHHTCSSCBSSCBCCEECHHHHHHHHHHHTTTCCSCCCGGGCEETTEECEEEEEEESSCCCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCccccCccCccCHHHHHHHHHHHhcCCCCCcCccccccCCCCCceEEEeecCCCCHHHH
Confidence            345789999999999999996     779999999999999999988732     22        177766655578999


Q ss_pred             HHHHHhhhccCCCCCCCCCCCccchhHHHHHHHhCCeeeEEEEEeCCC--CEEEEEEcCCCCccCCC--CCC
Q 044216           87 VGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKFRCNYG--GTSIGCNYASPGNVVGV--KPY  154 (154)
Q Consensus        87 v~~W~~e~~~y~~~~~~~~~~~~~~~f~q~vw~~t~~vGCa~~~c~~~--~~~~vC~Y~p~gn~~g~--~~Y  154 (154)
                      |+.||+|..+|+|..+.+..+..++|||||||+++++||||++.|.++  ..++||+|+|+||+.|+  +||
T Consensus        90 v~~W~~E~~~y~~~~~~~~~~~~~gHfTQ~VW~~t~~vGCa~~~c~~~~~~~~~VC~Y~P~GN~~g~~~~pY  161 (221)
T 1xta_A           90 IHLWHDEYKNFVYGVGASPPGSVTGHYTQIVWYQTYRAGCAVSYCPSSAWSYFYVCQYCPSGNFQGKTATPY  161 (221)
T ss_dssp             HHHHHGGGGGEETTTEESSTTCCCHHHHHHTCTTCCEEEEEEEECTTSSSSEEEEEEEESCCCCTTTTTCSS
T ss_pred             HHHHHHHHHhcCCCCCCCCCCCchhHHHHHHHHhcCEeeEEEEEcCCCCccEEEEEEEeCCcCCCCCcCCCc
Confidence            999999999999998777667789999999999999999999999875  68999999999999999  898

>1qnx_A VES V 5, antigen 5; allergen, vespid venom; 1.90A {Vespula vulgaris} SCOP: d.111.1.1

Probab=100.00  E-value=2.6e-37  Score=227.36  Aligned_cols=131  Identities=25%  Similarity=0.479  Sum_probs=109.3

Q ss_pred             CCCCchHHHHHHHHHHHHhhCC-----------------CCCcccCHHHHHHHHHHHHhhh---hcCCC--------cee
Q 044216           24 SRAQDFPQDYVNAHNAARAQVG-----------------VNPVKWDESIAAFARSYASQQI---ASCNL--------NLA   75 (154)
Q Consensus        24 ~~~~~~~~~il~~hN~~R~~~~-----------------m~~L~Wd~~La~~Aq~~a~~~~---~~c~~--------ni~   75 (154)
                      .+++++++.||+.||.+|+.|+                 |++|+||++||..||.||++|.   +.|+.        ||+
T Consensus        40 ~l~~~~~~~iL~~HN~~R~~~a~G~~~~~~~~~~p~A~~m~~L~Wd~~La~~Aq~~A~~C~~~h~~~~~~~~~~~GeNl~  119 (209)
T 1qnx_A           40 GLTKQEKQDILKEHNDFRQKIARGLETRGNPGPQPPAKNMKNLVWNDELAYVAQVWANQCQYGHDTCRDVAKYQVGQNVA  119 (209)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHTTCCCCSTTCCCCCBSSCCCCEECHHHHHHHHHHHTTCCCSCCSCCCCSSSCCEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHHHHHhcCccccCCCCCCCccccccccccCHHHHHHHHHHHhcCcccCCCccCCCCCCCccEEE
Confidence            3455788999999999999983                 8899999999999999999887   33431        777


Q ss_pred             eccC----CCChHHHHHHHHhhhccCCCCCCCCC-CCccchhHHHHHHHhCCeeeEEEEEeCCC---CEEEEEEcCCCCc
Q 044216           76 GSSG----NLSGADVVGLWVSEKADYDYNSNSCN-AGKVCGHYTHVVWRNSVRIGCAKFRCNYG---GTSIGCNYASPGN  147 (154)
Q Consensus        76 ~~~~----~~~~~~~v~~W~~e~~~y~~~~~~~~-~~~~~~~f~q~vw~~t~~vGCa~~~c~~~---~~~~vC~Y~p~gn  147 (154)
                      +...    ...+.++|+.||+|..+|++..+-.. .+..++|||||||++|++||||++.|.++   ..++||+|+|+||
T Consensus       120 ~~~~~~~~~~~~~~av~~W~~E~~~y~~~~~~~~~~~~~~gHfTQ~VW~~t~~vGCa~~~c~~~~~~~~~~VC~Y~P~GN  199 (209)
T 1qnx_A          120 LTGSTAAKYDDPVKLVKMWEDEVKDYNPKKKFSGNDFLKTGHYTQMVWANTKEVGCGSIKYIQEKWHKHYLVCNYGPSGN  199 (209)
T ss_dssp             EEEESSSCCCCHHHHHHHHHGGGGGCCTTSCGGGSCHHHHHHHHHHTCTTCCEEEEEEEEEEETTEEEEEEEEEEESCCC
T ss_pred             EecccCCCcccHHHHHHHHHHhhhhcCCccCCCCCCCCcccchhhhhhhcCcEeeeEEEEEeCCCceeEEEEEEeCCCCC
Confidence            6542    23688999999999999999864221 22468999999999999999999999765   3689999999999


Q ss_pred             cCCCCCC
Q 044216          148 VVGVKPY  154 (154)
Q Consensus       148 ~~g~~~Y  154 (154)
                      +.|++||
T Consensus       200 ~~g~~~Y  206 (209)
T 1qnx_A          200 FKNEELY  206 (209)
T ss_dssp             CTTSCSS
T ss_pred             CCCCCCC
Confidence            9999998

>1u53_A Secreted protein Asp-2; antibiotic; 1.56A {Necator americanus}

Probab=100.00  E-value=1e-36  Score=222.15  Aligned_cols=131  Identities=24%  Similarity=0.438  Sum_probs=110.8

Q ss_pred             CCCCCchHHHHHHHHHHHHhhCC-----------------CCCcccCHHHHHHHHHHHHhhhhcCC---C------ceee
Q 044216           23 PSRAQDFPQDYVNAHNAARAQVG-----------------VNPVKWDESIAAFARSYASQQIASCN---L------NLAG   76 (154)
Q Consensus        23 ~~~~~~~~~~il~~hN~~R~~~~-----------------m~~L~Wd~~La~~Aq~~a~~~~~~c~---~------ni~~   76 (154)
                      ..+++++++.||+.||.+|+.|+                 |.+|+||++||..||.||++|....+   .      ||++
T Consensus        10 ~~lt~~~~~~iL~~HN~~R~~~a~G~~~~~~g~~~p~A~nM~~L~Wd~~La~~Aq~~A~~C~~~h~~~~~~~~~GeNl~~   89 (196)
T 1u53_A           10 NGMSEEARQKFLEMHNSLRSSVALGQAKDGAGGNAPKAAKMKTMAYDCEVEKTAMNNAKQCVFKHSQPNQRKGLGENIFM   89 (196)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHHTTCCBCTTSSBCCCBSSCBCCEECHHHHHHHHHHHTTCCCCCCCGGGSTTCEEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHhCCCcccCCCCcCCccccchhcccCHHHHHHHHHHHHhCccCCCccccCCCCCeEEEE
Confidence            45666889999999999999982                 67999999999999999998873322   1      7776


Q ss_pred             ccCCC-----ChHHHHHHHHhhhccCCCCC-CCCC---CCccchhHHHHHHHhCCeeeEEEEEeCCCCEEEEEEcCCCCc
Q 044216           77 SSGNL-----SGADVVGLWVSEKADYDYNS-NSCN---AGKVCGHYTHVVWRNSVRIGCAKFRCNYGGTSIGCNYASPGN  147 (154)
Q Consensus        77 ~~~~~-----~~~~~v~~W~~e~~~y~~~~-~~~~---~~~~~~~f~q~vw~~t~~vGCa~~~c~~~~~~~vC~Y~p~gn  147 (154)
                      ..+..     .+.++|+.||+|..+|++.. +.+.   .++.++|||||||++|++||||++.|.+ ..++||+|+|+||
T Consensus        90 ~~~~~~~~~~~~~~~v~~W~~E~~~y~~~~~~~~~~~~~~~~~ghfTQ~VW~~t~~vGCa~~~c~~-~~~~VC~Y~p~GN  168 (196)
T 1u53_A           90 SSDSGMDKAKAAEQASKAWFGELAEKGVGQNLKLTGGLFSRGVGHYTQMVWQETVKLGCYVEACSN-MCYVVCQYGPAGN  168 (196)
T ss_dssp             ESCTTCCHHHHHHHHHHHHHTHHHHHCCCSCCBCCHHHHTTTCHHHHHHTCTTCCEEEEEEEECSS-CEEEEEEEESCCC
T ss_pred             ECCCCCCHHHHHHHHHHHHHHHHHHcCCCcccccCccccCccccchheeeecccCEEeeEEEEeCC-CEEEEEEeCCCCC
Confidence            65322     36889999999999999987 5554   2467999999999999999999999976 5999999999999


Q ss_pred             cCCCCCC
Q 044216          148 VVGVKPY  154 (154)
Q Consensus       148 ~~g~~~Y  154 (154)
                      +.|++||
T Consensus       169 ~~g~~~Y  175 (196)
T 1u53_A          169 MMGKDIY  175 (196)
T ss_dssp             CTTSBSS
T ss_pred             CCCCcCC
Confidence            9999998

>2vzn_A Venom allergen 3; major FIRE ANT allergen, SOL I 3, secreted, cross- reactivity; 3.05A {Solenopsis invicta}

Probab=100.00  E-value=1.2e-36  Score=225.20  Aligned_cols=131  Identities=30%  Similarity=0.568  Sum_probs=107.8

Q ss_pred             CCCCchHHHHHHHHHHHHhhCC-----------------CCCcccCHHHHHHHHHHHHhhh---hcCCC--------cee
Q 044216           24 SRAQDFPQDYVNAHNAARAQVG-----------------VNPVKWDESIAAFARSYASQQI---ASCNL--------NLA   75 (154)
Q Consensus        24 ~~~~~~~~~il~~hN~~R~~~~-----------------m~~L~Wd~~La~~Aq~~a~~~~---~~c~~--------ni~   75 (154)
                      .+++++++.||+.||.+|+.++                 |++|+||++||..||.||++|.   +.|+.        ||+
T Consensus        37 ~~t~~~~~~iL~~HN~~R~~~a~G~~~~~~~~~~p~A~~m~~L~Wd~~La~~Aq~~A~~C~~~Hs~c~~~~~~~~GeNl~  116 (218)
T 2vzn_A           37 GFTDAEKDAIVNKHNELRQRVASGKEMRGTNGPQPPAVKMPNLTWDPELATIAQRWANQCTFEHDACRNVERFAVGQNIA  116 (218)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHTTCCCCCTTSCCCCBSCCCCCEECHHHHHHHHHHHTTCCSSCCSCCCCSSSCCEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCchhhchhccCCHHHHHHHHHHHHhCCcCCCCCCCCccCCCceEEE
Confidence            3455778999999999999983                 7899999999999999999887   34431        777


Q ss_pred             eccC----CCChHHHHHHHHhhhccCCCCCC-C--CC--CCccchhHHHHHHHhCCeeeEEEEEeCC-C---CEEEEEEc
Q 044216           76 GSSG----NLSGADVVGLWVSEKADYDYNSN-S--CN--AGKVCGHYTHVVWRNSVRIGCAKFRCNY-G---GTSIGCNY  142 (154)
Q Consensus        76 ~~~~----~~~~~~~v~~W~~e~~~y~~~~~-~--~~--~~~~~~~f~q~vw~~t~~vGCa~~~c~~-~---~~~~vC~Y  142 (154)
                      +...    ...+.++|+.||+|..+|++... .  +.  .++.++|||||||++|++||||++.|.. +   ..++||+|
T Consensus       117 ~~~~~~~~~~~~~~av~~W~~E~~~y~~~~~~~~~~~~~~~~~~gHfTQ~VW~~t~~vGCa~~~c~~~~~~~~~~vVC~Y  196 (218)
T 2vzn_A          117 ATSSSGKNKSTPNEMILLWYNEVKDFDNRWISSFPSDDNILMKVGHYTQIVWAKTTKIGCGRIMFKEPDNWTKHYLVCNY  196 (218)
T ss_dssp             EEEECC-CCCCHHHHHHHHHGGGGGCCGGGSSSCCCCHHHHHHHHHHHHHTCTTCCEEEEEEEEEECTTSCEEEEEEEEE
T ss_pred             EEeccCCccchHHHHHHHHHHHHHhcCcccccCCCCCcccCCCcchHHHHHHHhcCEEeEEEEEEeCCCCeEEEEEEEEE
Confidence            6542    12567999999999999998842 1  11  1256899999999999999999999976 3   46999999


Q ss_pred             CCCCccCCCCCC
Q 044216          143 ASPGNVVGVKPY  154 (154)
Q Consensus       143 ~p~gn~~g~~~Y  154 (154)
                      +|+||+.|++||
T Consensus       197 ~P~GN~~g~~~y  208 (218)
T 2vzn_A          197 GPAGNVLGAPIY  208 (218)
T ss_dssp             ESCCCCTTSCSS
T ss_pred             CCCCCCCCCccc
Confidence            999999999998

>3q2u_A Glioma pathogenesis-related protein 1; crisp, membrane protein; 1.85A {Homo sapiens} PDB: 3q2r_A

Probab=100.00  E-value=7.5e-36  Score=218.95  Aligned_cols=130  Identities=36%  Similarity=0.649  Sum_probs=110.9

Q ss_pred             cCCCCCchHHHHHHHHHHHHhhCC-----CCCcccCHHHHHHHHHHHHhhhh---cCC------------C--ceeeccC
Q 044216           22 LPSRAQDFPQDYVNAHNAARAQVG-----VNPVKWDESIAAFARSYASQQIA---SCN------------L--NLAGSSG   79 (154)
Q Consensus        22 ~~~~~~~~~~~il~~hN~~R~~~~-----m~~L~Wd~~La~~Aq~~a~~~~~---~c~------------~--ni~~~~~   79 (154)
                      +.....+++++||+.||.+|+.|.     |.+|+||++||..||.||++|..   .|.            .  ||+.++.
T Consensus        11 p~~~~~~f~~~~L~~HN~~R~~~~~~A~nM~~L~Wd~~La~~Aq~~A~~C~~~h~~~~~~~~~~~~~~~~~GeNl~~~~~   90 (205)
T 3q2u_A           11 PDIENEDFIKDCVRIHNKFRSEVKPTASDMLYMTWDPALAQIAKAWASNCQFSHNTRLKPPHKLHPNFTSLGENIWTGSV   90 (205)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHTCSSCBSSCBCCEECHHHHHHHHHHHTTCBSSCCTTSSTTCCSSTTCSSCEEEEEEEET
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhcCCCcccCccCccCHHHHHHHHHHHHhCCCCCCccccccccccCCCCCCceEEEEccC
Confidence            344456889999999999999996     78999999999999999998872   221            1  7776553


Q ss_pred             -CCChHHHHHHHHhhhccCCCCCCCCCCCccchhHHHHHHHhCCeeeEEEEEeCC--------CCEEEEEEcCCCCccCC
Q 044216           80 -NLSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKFRCNY--------GGTSIGCNYASPGNVVG  150 (154)
Q Consensus        80 -~~~~~~~v~~W~~e~~~y~~~~~~~~~~~~~~~f~q~vw~~t~~vGCa~~~c~~--------~~~~~vC~Y~p~gn~~g  150 (154)
                       ...+.++|+.||+|..+|+|..+.+.  ..++|||||||++|++||||++.|..        ...++||+|+|+||+ |
T Consensus        91 ~~~~~~~~v~~W~~E~~~y~~~~~~~~--~~~gHfTQ~VW~~t~~vGCa~~~c~~~~g~~~~~~~~~~VC~Y~P~GN~-~  167 (205)
T 3q2u_A           91 PIFSVSSAITNWYDEIQDYDFKTRICK--KVCGHYTQVVWADSYKVGCAVQFCPKVSGFDALSNGAHFICNYGPGGNY-P  167 (205)
T ss_dssp             TTCCHHHHHHHHHGGGGGEETTTTEES--SCCHHHHHHTCTTCCEEEEEEEEESCCBTCSSCCSEEEEEEEEESCCCC-S
T ss_pred             CCCCHHHHHHHHHhHHHhcCCCCCCcc--chhHHHHHHHhhcccEeeeEEEEcCCCcCcccccccEEEEEEEECCCCc-C
Confidence             45789999999999999999887664  56999999999999999999999975        247899999999999 8


Q ss_pred             CCCC
Q 044216          151 VKPY  154 (154)
Q Consensus       151 ~~~Y  154 (154)
                      ++||
T Consensus       168 ~~pY  171 (205)
T 3q2u_A          168 TWPY  171 (205)
T ss_dssp             SCSS
T ss_pred             CCCC
Confidence            8888

>3u3l_C Tablysin 15; CAP domain, alphavbeta3 integrin, salivary gland, protein BI; HET: PLM CIT; 1.57A {Tabanus yao} PDB: 3u3n_C* 3u3u_C*

Probab=100.00  E-value=3.5e-35  Score=219.29  Aligned_cols=129  Identities=18%  Similarity=0.244  Sum_probs=104.5

Q ss_pred             CCCchHHHHHHHHHHHHhhC-----------CCCCcccCHHHHHHHHHHHHhhhh---cCCC---------ceeeccCC-
Q 044216           25 RAQDFPQDYVNAHNAARAQV-----------GVNPVKWDESIAAFARSYASQQIA---SCNL---------NLAGSSGN-   80 (154)
Q Consensus        25 ~~~~~~~~il~~hN~~R~~~-----------~m~~L~Wd~~La~~Aq~~a~~~~~---~c~~---------ni~~~~~~-   80 (154)
                      +++++++.||+.||.+|+.|           .|++|+||++||..||.||++|..   .|+.         |++..++. 
T Consensus        36 ~s~~~~~~il~~HN~~R~~va~G~~~~P~A~nM~~L~Wd~~La~~Aq~~a~~C~~~h~~c~~~~~~~~~Gen~~~~~~~~  115 (233)
T 3u3l_C           36 LLKEHRNEILSKINDVRDHVAKGSWGLPVAARMKVVVWDAELAGLAKRHTKGCVGETHACRNTERFWLPGQLNFKYSGDK  115 (233)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTTCTTCCCBSSCBCCEECHHHHHHHHHHHTTCCSCCCCBCCCSSCSSCEEEEEEEEESS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHcCCCCCCccccCCccEECHHHHHHHHHHHHhCCCCCCcccccCcCCcCeEEEEEecCCC
Confidence            45678999999999999999           399999999999999999998873   3331         34333221 


Q ss_pred             -C----ChHHHHHHHHhhhccCCCCC----CCCCCCccchhHHHHHHHhCCeeeEEEEEeCCC---CEEEEEEcCCCCcc
Q 044216           81 -L----SGADVVGLWVSEKADYDYNS----NSCNAGKVCGHYTHVVWRNSVRIGCAKFRCNYG---GTSIGCNYASPGNV  148 (154)
Q Consensus        81 -~----~~~~~v~~W~~e~~~y~~~~----~~~~~~~~~~~f~q~vw~~t~~vGCa~~~c~~~---~~~~vC~Y~p~gn~  148 (154)
                       .    .+.++|+.||+|.++|++..    +....++.++|||||||++|++||||++.|..+   .+++||+|+| ||+
T Consensus       116 ~~~~~~~~~~av~~W~~E~~~y~~~~~~~~~~~~~~~~~gHfTQmVW~~t~~vGCa~~~c~~~~~~~~~~VC~Y~p-GN~  194 (233)
T 3u3l_C          116 LPRIKELIDDAVKKGHLQKHNITREIIENYRENGPNGDVKELALAISDRVTAVGCGLTTWEDGAKARALLTCNFSS-QNT  194 (233)
T ss_dssp             CCCHHHHHHHHHHHHHGGGGTCCHHHHHSCCSCC--CCCHHHHHHTCTTCCEEEEEEEEEEETTEEEEEEEEEESC-CCC
T ss_pred             CCCHHHHHHHHHHHHHHHHhhhCHHHHhcCCCcccccchhhhHHHhhhcCCeeeeEEEEEEcCCeeEEEEEEECCC-CCC
Confidence             1    26889999999999998653    222335679999999999999999999999764   4799999998 999


Q ss_pred             CCCCCC
Q 044216          149 VGVKPY  154 (154)
Q Consensus       149 ~g~~~Y  154 (154)
                      .|++||
T Consensus       195 ~g~~~Y  200 (233)
T 3u3l_C          195 RGRPVY  200 (233)
T ss_dssp             TTSCSS
T ss_pred             CCCcee
Confidence            999998

>3nt8_A Ancylostoma secreted protein 1; pathogenesis related-1 protein, cysteine-rich secretory PROT domain, immune system; 2.20A {Necator americanus}

Probab=100.00  E-value=7.1e-35  Score=234.05  Aligned_cols=130  Identities=17%  Similarity=0.293  Sum_probs=109.7

Q ss_pred             CCCCchHHHHHHHHHHHHhhCC----------------CCCcccCHHHHHHHHHHHHhhhhcCCC------ceeecc--C
Q 044216           24 SRAQDFPQDYVNAHNAARAQVG----------------VNPVKWDESIAAFARSYASQQIASCNL------NLAGSS--G   79 (154)
Q Consensus        24 ~~~~~~~~~il~~hN~~R~~~~----------------m~~L~Wd~~La~~Aq~~a~~~~~~c~~------ni~~~~--~   79 (154)
                      .+++++++.||+.||++|+.++                |.+|+||++||..||.||++|....+.      |++...  +
T Consensus        31 ~~~~~~~~~il~~HN~~R~~~A~G~~~~~~~~~p~A~nM~~L~Wd~eLa~~Aq~~a~~C~~~h~~~~~~GeNl~~~~~~~  110 (424)
T 3nt8_A           31 GITDSDRQAFLDFHNNARRRVAKGLEDSNSGKLNPAKNMYKLSWDCAMEQQLQDAIQSCPSGFAGIQGVAQNTMSWSSSG  110 (424)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHTTCCBCSSSBCCCEESCBCCEECHHHHHHHHHHCTTCCSSCCCCTTCEEEEEEEECTT
T ss_pred             CCCHHHHHHHHHHHHHHHHHHhCCcccCCCCCCcccccCCccccCHHHHHHHHHHHhhCCCcCCCCCCceeeEEeccccC
Confidence            4556789999999999999992                889999999999999999977633221      776543  1


Q ss_pred             C-----CChHHHHHHHHhhhccCCCCCCCCCCCccchhHHHHHHHhCCeeeEEEEEeCCCCEEEEEEcCCCCccCCCCCC
Q 044216           80 N-----LSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKFRCNYGGTSIGCNYASPGNVVGVKPY  154 (154)
Q Consensus        80 ~-----~~~~~~v~~W~~e~~~y~~~~~~~~~~~~~~~f~q~vw~~t~~vGCa~~~c~~~~~~~vC~Y~p~gn~~g~~~Y  154 (154)
                      .     ..+.++|+.||+|.++|++.......+..++|||||||+++++||||++.|.. ..++||+|+|+||+.|++||
T Consensus       111 ~~~~~~~~~~~~v~~W~~E~~~y~~~~~~~~~~~~~ghfTqmvw~~t~~vGCa~~~c~~-~~~~VC~Y~p~GN~~g~~~Y  189 (424)
T 3nt8_A          111 GYPDPSVKIEPTLSGWWSGAKKNGVGPDNKYTGGGLFAFSNMVYSETTKLGCAYKVCGT-KLAVSCIYNGVGYITNQPMW  189 (424)
T ss_dssp             CCSCGGGGHHHHHHHHHTHHHHHCCCTTCBCCCTTCHHHHHHHCTTCCEEEEEEEEETT-EEEEEEEESSCCCSTTCBSS
T ss_pred             CcCCHHHHHHHHHHHHHHHHHHcCCcccccCCCcchHHHHHHHHHhcCeeceEEEEeCC-cEEEEEEECCCCCccccccc
Confidence            1     13688999999999999998655544567899999999999999999999977 69999999999999999998

>3nt8_A Ancylostoma secreted protein 1; pathogenesis related-1 protein, cysteine-rich secretory PROT domain, immune system; 2.20A {Necator americanus}

Probab=100.00  E-value=3.2e-33  Score=224.44  Aligned_cols=130  Identities=23%  Similarity=0.413  Sum_probs=109.2

Q ss_pred             CCCCchHHHHHHHHHHHHhhCC-----------------CCCcccCHHHHHHHHHHHHhhhhcCCC---------ceeec
Q 044216           24 SRAQDFPQDYVNAHNAARAQVG-----------------VNPVKWDESIAAFARSYASQQIASCNL---------NLAGS   77 (154)
Q Consensus        24 ~~~~~~~~~il~~hN~~R~~~~-----------------m~~L~Wd~~La~~Aq~~a~~~~~~c~~---------ni~~~   77 (154)
                      .+++++++.||+.||++|+.|+                 |.+|+||++||..||.||++|....+.         ||+..
T Consensus       232 ~~~~~~~~~iL~~HN~~R~~~a~G~~~~~~~~~~p~A~nM~~L~Wd~~La~~Aq~~a~~C~~~h~~~~~~~~~GeNl~~~  311 (424)
T 3nt8_A          232 GMTDSVRDTFLSVHNEFRSSVARGLEPDALGGNAPKAAKMLKMVYDCEVEASAIRHGNKCVYQHSHGEDRPGLGENIYKT  311 (424)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHTTCSBCTTSSBCCCBSSCBCCEECHHHHHHHHHHHTTCCSSCCCTTTSTTCEEEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCCCCCchhceEhHHHHHHHHHHHHhCcccCCCccccCccceeEEec
Confidence            4566899999999999999985                 459999999999999999977632221         77766


Q ss_pred             cC-CC----ChHHHHHHHHhhhccCCCCCCC-C------CCCccchhHHHHHHHhCCeeeEEEEEeCCCCEEEEEEcCCC
Q 044216           78 SG-NL----SGADVVGLWVSEKADYDYNSNS-C------NAGKVCGHYTHVVWRNSVRIGCAKFRCNYGGTSIGCNYASP  145 (154)
Q Consensus        78 ~~-~~----~~~~~v~~W~~e~~~y~~~~~~-~------~~~~~~~~f~q~vw~~t~~vGCa~~~c~~~~~~~vC~Y~p~  145 (154)
                      +. ..    .+.++|+.||+|.++|++.... +      ..+..++|||||||++|++||||++.|.++ .++||+|+|+
T Consensus       312 ~~~~~~~~~~~~~~v~~W~~E~~~y~~~~~~~~~~~~~~~~~~~~gHfTQ~VW~~t~~vGCa~~~c~~~-~~~VC~Y~p~  390 (424)
T 3nt8_A          312 SVLKFDKNKAAKQASQLWWNELKEYGVGPSNVLTTALWNRPNMQIGHYTQMAWDTTYKLGCAVVFCNDF-TFGVCQYGPG  390 (424)
T ss_dssp             SSTTCCHHHHHHHHHHHHHTHHHHTCCCTTCBCCHHHHTCTTCCCHHHHHHHCTTCCEEEEEEEECSSS-EEEEEEEESC
T ss_pred             ccCCCchHHHHHHHHHHHHHHHHhcCCCCCcccccccccCCCCcccchHHHhhhhcceeeeEEEEeCCC-eEEEEEecCC
Confidence            42 22    4789999999999999987543 1      235679999999999999999999999875 8999999999


Q ss_pred             CccCCCCCC
Q 044216          146 GNVVGVKPY  154 (154)
Q Consensus       146 gn~~g~~~Y  154 (154)
                      ||+.|++||
T Consensus       391 GN~~g~~~Y  399 (424)
T 3nt8_A          391 GNYMGHVIY  399 (424)
T ss_dssp             CCCTTSBSS
T ss_pred             CCcCCCCCC
Confidence            999999998

>3s6s_A AC-Asp-7; pathogenesis-related protein, SCP/TAPS, unknown function; 2.40A {Ancylostoma caninum} PDB: 3s6v_A 3s6u_A

Probab=99.97  E-value=2.7e-31  Score=194.07  Aligned_cols=112  Identities=15%  Similarity=0.126  Sum_probs=92.7

Q ss_pred             CCCCchHHHHHHHHHHHHhhCC------------CCCcccCHHHHHHHHHHHHhhhhcC----CCceeeccC---CCCh-
Q 044216           24 SRAQDFPQDYVNAHNAARAQVG------------VNPVKWDESIAAFARSYASQQIASC----NLNLAGSSG---NLSG-   83 (154)
Q Consensus        24 ~~~~~~~~~il~~hN~~R~~~~------------m~~L~Wd~~La~~Aq~~a~~~~~~c----~~ni~~~~~---~~~~-   83 (154)
                      .+++++++.||+.||++|+.++            |.+|+||++||..||.||+ |. .-    ..|++..++   ...+ 
T Consensus        13 ~lt~~~~~~il~~HN~~R~~va~G~~~~~p~A~nM~~l~Wd~eLa~~Aq~~A~-C~-~~~~~~GeNl~~~sg~~~~~~~~   90 (206)
T 3s6s_A           13 MVDRPFREAIDTFHNGLRQRIAKGEAEGYGPAREMYGLVYDCGLEEEARKEIK-LP-GYADLHHRGVTRFSGDYEGSAIS   90 (206)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHTTCSTTSCSCCCCBCCEEEHHHHHHHHHHHH-ST-THHHHTTCEEEEEEEECSSCHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHhCCCCCCCcchhhcCcCCchHHHHHHHHHhhc-CC-CCCCCCCcEEEEecCCCCccchh
Confidence            3556789999999999999874            7789999999999999999 98 21    238854332   2223 


Q ss_pred             -HHHHHHHHhhhccCCCCCCCCCCCccchhHHHHHHHhCCeeeEEEEEeC----CC-CEEEEEEcCCCCccCCCCCC
Q 044216           84 -ADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKFRCN----YG-GTSIGCNYASPGNVVGVKPY  154 (154)
Q Consensus        84 -~~~v~~W~~e~~~y~~~~~~~~~~~~~~~f~q~vw~~t~~vGCa~~~c~----~~-~~~~vC~Y~p~gn~~g~~~Y  154 (154)
                       .++|+.|++|               .++|||||||++|++||||++.|.    .+ .+++||+|+|+|  .|++||
T Consensus        91 ~~~av~~W~~E---------------~~gHfTQmVW~~Tt~VGCa~~~C~~~~~~~~~~~vVCnY~p~G--~g~~~Y  150 (206)
T 3s6s_A           91 ALKEILETFSA---------------DKNSMRQVVYPKATRFGCSGRLRRNKKTGMRRMDWVCVYDKKP--KDGESF  150 (206)
T ss_dssp             HHHHHHHHHTT---------------CHHHHHHHHCTTCCEEEEEEEECC-------EEEEEEEESCCC--CTTCCC
T ss_pred             HHHHHHHHHhh---------------hhhhHHHHHHHhhceeeEEEEEecCcCCCCceEEEEEEeCCCC--CCCCCc
Confidence             3899999999               389999999999999999999996    23 589999999988  899998

>4ifa_A Extracellular protein containing A SCP domain; vaccine candi virulence, pathogenesis, center for structural genomics of infectious diseases; HET: MSE; 1.50A {Bacillus anthracis}

Probab=99.34  E-value=3.7e-12  Score=99.18  Aligned_cols=84  Identities=17%  Similarity=0.286  Sum_probs=71.9

Q ss_pred             chHHHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhhhcCCC--------------------------ceeeccCCC
Q 044216           28 DFPQDYVNAHNAARAQVGVNPVKWDESIAAFARSYASQQIASCNL--------------------------NLAGSSGNL   81 (154)
Q Consensus        28 ~~~~~il~~hN~~R~~~~m~~L~Wd~~La~~Aq~~a~~~~~~c~~--------------------------ni~~~~~~~   81 (154)
                      .+.+++|+.||.+|..+++++|+||..|+..||.||+.++..|..                          ||+.+.  .
T Consensus       219 a~e~~vl~lvN~~Ra~~Gl~pL~~d~~L~~aAq~hA~dMa~~~~fsH~~~~G~~~~~R~~~~G~~~~~~GENIA~G~--~  296 (339)
T 4ifa_A          219 GNMQQIFDLTNIIRSRHNLPLLAWDQQTADVAIGHSKDMKDNNYFSHDSPTLGTLGDRLQRGKVGFQLAGENIAAQH--S  296 (339)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHHHHHHHHHTCCSSSBTTTBCHHHHHHHTTCCCSEEEEEEEESC--S
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCccCHHHHHHHHHHHHHHhhcCCeecCCCCCCCHHHHHHHcCCCcCceeEEEEEeC--C
Confidence            346789999999999999999999999999999999999854432                          555543  3


Q ss_pred             ChHHHHHHHHhhhccCCCCCCCCCCCccchhHHHHHHHhCCeeeEEEE
Q 044216           82 SGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKF  129 (154)
Q Consensus        82 ~~~~~v~~W~~e~~~y~~~~~~~~~~~~~~~f~q~vw~~t~~vGCa~~  129 (154)
                      ++..+++.|++                ..+|+.+|+|.+.+++|+|+.
T Consensus       297 s~~~av~~Wmn----------------SpGHr~NIL~~~~t~iGvGv~  328 (339)
T 4ifa_A          297 DGVAALQGWLN----------------SEGHRKNLLNEQFTGLGVGVY  328 (339)
T ss_dssp             SHHHHHHHHHT----------------SHHHHHHHTCTTCCEEEEEEE
T ss_pred             CHHHHHHHHhC----------------CHhHHHHHhCCCCCEEEEEEE
Confidence            78899999974                368999999999999999986

>4h0a_A Uncharacterized protein; CAP protein family, cysteine-rich secretory proteins, struct genomics, joint center for structural genomics; 1.90A {Staphylococcus aureus subsp}

Probab=98.91  E-value=4.9e-09  Score=81.22  Aligned_cols=83  Identities=13%  Similarity=0.145  Sum_probs=68.6

Q ss_pred             hHHHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhhhcCCC-------------------------ceeeccCCCCh
Q 044216           29 FPQDYVNAHNAARAQVGVNPVKWDESIAAFARSYASQQIASCNL-------------------------NLAGSSGNLSG   83 (154)
Q Consensus        29 ~~~~il~~hN~~R~~~~m~~L~Wd~~La~~Aq~~a~~~~~~c~~-------------------------ni~~~~~~~~~   83 (154)
                      ..++||+..|.+|..+++++|.||..|+..|+.+|+.++.....                         ||+.+.  .++
T Consensus       205 ~e~~il~liN~~R~~~GL~pL~~d~~L~~aA~~ha~dma~~~~~h~~~~g~~~~~R~~~~g~~~~~~gENIA~g~--~~~  282 (323)
T 4h0a_A          205 QLISLYEVTNEMRKLKGLKPLKINSDLAHIASNNLYEATSNGSDSVEFTEDALRGQLDKNHVTYKTTAQNVGYAF--NDV  282 (323)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHHHHHHTC------CCCHHHHHHHHHHTTCCCSEEEEEEEESC--CSH
T ss_pred             HHHHHHHHHHHHHHHcCCcccCccHhHHHHHHHHHHHHhhCCCCCcCCCCCCHHHHHHHcCCCcCeeeeEEecCC--CCH
Confidence            34679999999999999999999999999999999998732110                         665554  378


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCccchhHHHHHHHhCCeeeEEEE
Q 044216           84 ADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKF  129 (154)
Q Consensus        84 ~~~v~~W~~e~~~y~~~~~~~~~~~~~~~f~q~vw~~t~~vGCa~~  129 (154)
                      ..+++.|.+                .-+|..+|+..+-+++|+|+.
T Consensus       283 ~~vv~~Wmn----------------SpgHR~NiL~~~~t~iGvGv~  312 (323)
T 4h0a_A          283 PTLIHSWMN----------------SDIHRSRLLNSKYDEMGGDVM  312 (323)
T ss_dssp             HHHHHHHHT----------------SHHHHHHHTCSSCCEEEEEEE
T ss_pred             HHHHHHHHc----------------CHHHHHHHcCCCCCEEEEEEE
Confidence            899999973                258999999999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	154
d1cfea_	135	d.111.1.1 (A:) Pathogenesis-related protein 1 (PR1	4e-37
d1smba_	149	d.111.1.1 (A:) Golgi-associated PR-1 protein {Huma	3e-28
d1rc9a1	164	d.111.1.1 (A:1-164) Cysteine-rich secretory protei	2e-27
d1qnxa_	209	d.111.1.1 (A:) Insect allergen 5 (AG5) {Yellow jac	1e-20

>d1cfea_ d.111.1.1 (A:) Pathogenesis-related protein 1 (PR1) {Tomato (Lycopersicon esculentum), P14a [TaxId: 4081]} Length = 135

class: Alpha and beta proteins (a+b)
fold: PR-1-like
superfamily: PR-1-like
family: PR-1-like
domain: Pathogenesis-related protein 1 (PR1)
species: Tomato (Lycopersicon esculentum), P14a [TaxId: 4081]

 Score =  122 bits (306), Expect = 4e-37
 Identities = 68/135 (50%), Positives = 87/135 (64%), Gaps = 7/135 (5%)

Query: 27  QDFPQDYVNAHNAARAQVGVNPVKWDESIAAFARSYASQQIASCNL-------NLAGSSG 79
           Q+ PQDY+  HN ARAQVGV P+ WD ++A+ A++YA+ +   CNL       NLA   G
Sbjct: 1   QNSPQDYLAVHNDARAQVGVGPMSWDANLASRAQNYANSRAGDCNLIHSGAGENLAKGGG 60

Query: 80  NLSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKFRCNYGGTSIG 139
           + +G   V LWVSE+  Y+Y +N C  GK C HYT VVWRNSVR+GC + RCN G   I 
Sbjct: 61  DFTGRAAVQLWVSERPSYNYATNQCVGGKKCRHYTQVVWRNSVRLGCGRARCNNGWWFIS 120

Query: 140 CNYASPGNVVGVKPY 154
           CNY   GN +G +PY
Sbjct: 121 CNYDPVGNWIGQRPY 135

>d1smba_ d.111.1.1 (A:) Golgi-associated PR-1 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a+b)
fold: PR-1-like
superfamily: PR-1-like
family: PR-1-like
domain: Golgi-associated PR-1 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =   99 bits (248), Expect = 3e-28
 Identities = 38/144 (26%), Positives = 69/144 (47%), Gaps = 15/144 (10%)

Query: 24  SRAQDFPQDYVNAHNAARAQVGVNPVKWDESIAAFARSYASQQIASCNL----------- 72
           S ++ F  + + AHN  R + GV P+K  +++   A+ Y+    ++  L           
Sbjct: 1   SASKQFHNEVLKAHNEYRQKHGVPPLKLCKNLNREAQQYSEALASTRILKHSPESSRGQC 60

Query: 73  --NLAGSSGNLSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKFR 130
             NLA +S + +G +V   W SE  +Y++      +G   GH+T +VW+N+ ++G  K  
Sbjct: 61  GENLAWASYDQTGKEVADRWYSEIKNYNFQQPGFTSG--TGHFTAMVWKNTKKMGVGKAS 118

Query: 131 CNYGGTSIGCNYASPGNVVGVKPY 154
            + G + +   Y   GNVV    +
Sbjct: 119 ASDGSSFVVARYFPAGNVVNEGFF 142

>d1rc9a1 d.111.1.1 (A:1-164) Cysteine-rich secretory protein (SteCRISP) {Chinese green tree viper (Trimeresurus stejnegeri) [TaxId: 39682]} Length = 164

class: Alpha and beta proteins (a+b)
fold: PR-1-like
superfamily: PR-1-like
family: PR-1-like
domain: Cysteine-rich secretory protein (SteCRISP)
species: Chinese green tree viper (Trimeresurus stejnegeri) [TaxId: 39682]

 Score = 98.0 bits (243), Expect = 2e-27
 Identities = 40/156 (25%), Positives = 58/156 (37%), Gaps = 22/156 (14%)

Query: 21  ALPSRAQDFPQDYVNAHNAARAQVGVNP-----VKWDESIAAFARSYASQQIASCNL--- 72
           +   R  +   + V+ HN+ R  V         ++W    A  A  +A + I S +    
Sbjct: 6   SESPRKPEIQNEIVDLHNSLRRSVNPTASNMLRMEWYPEAADNAERWAYRCIESHSSYES 65

Query: 73  ----------NLAGSSGNLSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSV 122
                     N+  S   +   D++  W  E  D+ Y   +     V GHYT +VW  S 
Sbjct: 66  RVIEGIKCGENIYMSPYPMKWTDIIHAWHDEYKDFKYGVGADPPNAVTGHYTQIVWYKSY 125

Query: 123 RIGCAKFRCNYG--GTSIGCNYASPGNVVG--VKPY 154
           RIGCA   C          C Y   GN +G    PY
Sbjct: 126 RIGCAAAYCPSSPYSYFFVCQYCPAGNFIGKTATPY 161

>d1qnxa_ d.111.1.1 (A:) Insect allergen 5 (AG5) {Yellow jacket (Vespula vulgaris), Ves v 5 [TaxId: 7454]} Length = 209

class: Alpha and beta proteins (a+b)
fold: PR-1-like
superfamily: PR-1-like
family: PR-1-like
domain: Insect allergen 5 (AG5)
species: Yellow jacket (Vespula vulgaris), Ves v 5 [TaxId: 7454]

 Score = 81.9 bits (201), Expect = 1e-20
 Identities = 31/164 (18%), Positives = 57/164 (34%), Gaps = 36/164 (21%)

Query: 27  QDFPQDYVNAHNAARAQVG-----------------VNPVKWDESIAAFARSYASQQIAS 69
           +   QD +  HN  R ++                  +  + W++ +A  A+ +A+Q    
Sbjct: 43  KQEKQDILKEHNDFRQKIARGLETRGNPGPQPPAKNMKNLVWNDELAYVAQVWANQCQYG 102

Query: 70  CNL---------------NLAGSSGNLSGADVVGLWVSEKADYDYNSNSC-NAGKVCGHY 113
            +                  + ++       +V +W  E  DY+       N     GHY
Sbjct: 103 HDTCRDVAKYQVGQNVALTGSTAAKYDDPVKLVKMWEDEVKDYNPKKKFSGNDFLKTGHY 162

Query: 114 THVVWRNSVRIGCAKFRC---NYGGTSIGCNYASPGNVVGVKPY 154
           T +VW N+  +GC   +     +    + CNY   GN    + Y
Sbjct: 163 TQMVWANTKEVGCGSIKYIQEKWHKHYLVCNYGPSGNFKNEELY 206

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	154
d1cfea_	135	Pathogenesis-related protein 1 (PR1) {Tomato (Lyco	100.0
d1smba_	149	Golgi-associated PR-1 protein {Human (Homo sapiens	100.0
d1rc9a1	164	Cysteine-rich secretory protein (SteCRISP) {Chines	100.0
d1qnxa_	209	Insect allergen 5 (AG5) {Yellow jacket (Vespula vu	100.0

>d1cfea_ d.111.1.1 (A:) Pathogenesis-related protein 1 (PR1) {Tomato (Lycopersicon esculentum), P14a [TaxId: 4081]}

class: Alpha and beta proteins (a+b)
fold: PR-1-like
superfamily: PR-1-like
family: PR-1-like
domain: Pathogenesis-related protein 1 (PR1)
species: Tomato (Lycopersicon esculentum), P14a [TaxId: 4081]

Probab=100.00  E-value=5.4e-45  Score=250.10  Aligned_cols=128  Identities=53%  Similarity=1.035  Sum_probs=119.9

Q ss_pred             CchHHHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhhhcCCC-------ceeeccCCCChHHHHHHHHhhhccCCC
Q 044216           27 QDFPQDYVNAHNAARAQVGVNPVKWDESIAAFARSYASQQIASCNL-------NLAGSSGNLSGADVVGLWVSEKADYDY   99 (154)
Q Consensus        27 ~~~~~~il~~hN~~R~~~~m~~L~Wd~~La~~Aq~~a~~~~~~c~~-------ni~~~~~~~~~~~~v~~W~~e~~~y~~   99 (154)
                      +++++++|+.||.+|+.++|++|+||++|+..||+||++|+..|..       ||+.+.++.++.++++.||+|..+|+|
T Consensus         1 ~~~~q~~l~~HN~~R~~~~~~~L~Wd~~La~~Aq~~A~~~~~~~~~~~~~~GeNi~~~~~~~~~~~av~~W~~E~~~y~~   80 (135)
T d1cfea_           1 QNSPQDYLAVHNDARAQVGVGPMSWDANLASRAQNYANSRAGDCNLIHSGAGENLAKGGGDFTGRAAVQLWVSERPSYNY   80 (135)
T ss_dssp             CCSHHHHHHHHHHHHHHTTCCCCEECSHHHHHHHHHHHHHTTTCCSCSCSSSBCCEECSSSCCHHHHHHHHHTTGGGEEG
T ss_pred             CCcHHHHHHHHHHHHHHcCCCcCEECHHHHHHHHHHHHHHhhCCCcccCccccceeccCCCCCHHHHHHHHHhhcccccc
Confidence            4678899999999999999999999999999999999999977764       888877778899999999999999999


Q ss_pred             CCCCCCCCccchhHHHHHHHhCCeeeEEEEEeCCCCEEEEEEcCCCCccCCCCCC
Q 044216          100 NSNSCNAGKVCGHYTHVVWRNSVRIGCAKFRCNYGGTSIGCNYASPGNVVGVKPY  154 (154)
Q Consensus       100 ~~~~~~~~~~~~~f~q~vw~~t~~vGCa~~~c~~~~~~~vC~Y~p~gn~~g~~~Y  154 (154)
                      ..+.+..+..++|||||||++|++||||++.|.++..++||+|+|+||+.|++||
T Consensus        81 ~~~~~~~~~~~ghftQmvW~~t~~vGCa~~~c~~~~~~vVC~Y~P~GN~~g~~pY  135 (135)
T d1cfea_          81 ATNQCVGGKKCRHYTQVVWRNSVRLGCGRARCNNGWWFISCNYDPVGNWIGQRPY  135 (135)
T ss_dssp             GGTEECSSSCCSSHHHHHCTTCCEEEEEEEECTTSSEEEEEECSSCCSCTTSCCC
T ss_pred             ccccCCCCcccchhheeeehhheEeeEEEEEECCCCEEEEEEEeCCCCcCCcCCC
Confidence            9888877788999999999999999999999999889999999999999999999

>d1smba_ d.111.1.1 (A:) Golgi-associated PR-1 protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: PR-1-like
superfamily: PR-1-like
family: PR-1-like
domain: Golgi-associated PR-1 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-40  Score=229.98  Aligned_cols=127  Identities=28%  Similarity=0.503  Sum_probs=115.8

Q ss_pred             CCchHHHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhhhcCCC-------------ceeeccCCCChHHHHHHHHh
Q 044216           26 AQDFPQDYVNAHNAARAQVGVNPVKWDESIAAFARSYASQQIASCNL-------------NLAGSSGNLSGADVVGLWVS   92 (154)
Q Consensus        26 ~~~~~~~il~~hN~~R~~~~m~~L~Wd~~La~~Aq~~a~~~~~~c~~-------------ni~~~~~~~~~~~~v~~W~~   92 (154)
                      +++++++||+.||.+|+.+++++|+||++|++.||.||++|+.+|..             |++.+..+..+.++|+.|++
T Consensus         3 ~~~f~~~il~~HN~~R~~~g~~pL~wd~~La~~A~~~A~~~a~~~~~~h~~~~~~~~~geni~~~~~~~~~~~~v~~W~~   82 (149)
T d1smba_           3 SKQFHNEVLKAHNEYRQKHGVPPLKLCKNLNREAQQYSEALASTRILKHSPESSRGQCGENLAWASYDQTGKEVADRWYS   82 (149)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHHHHHHHHHCCCCCCHHHHTTSSEEEEEEESSCCCHHHHHHHHHG
T ss_pred             hHHHHHHHHHHHHHHHHHcCCCcchhhHHHHHHHHHHHHhhcccccccccccccccccCceeeecCCCccHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999987764             77776656688999999999


Q ss_pred             hhccCCCCCCCCCCCccchhHHHHHHHhCCeeeEEEEEeCCCCEEEEEEcCCCCccCCCCCC
Q 044216           93 EKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKFRCNYGGTSIGCNYASPGNVVGVKPY  154 (154)
Q Consensus        93 e~~~y~~~~~~~~~~~~~~~f~q~vw~~t~~vGCa~~~c~~~~~~~vC~Y~p~gn~~g~~~Y  154 (154)
                      |..+|+|..+.+.  ..++|||||||+++++||||++.|.++..++||+|+|+||+.|+.||
T Consensus        83 e~~~y~~~~~~~~--~~~ghftqmvw~~t~~vGCg~a~c~~~~~~~VC~Y~p~GN~~~~~~y  142 (149)
T d1smba_          83 EIKNYNFQQPGFT--SGTGHFTAMVWKNTKKMGVGKASASDGSSFVVARYFPAGNVVNEGFF  142 (149)
T ss_dssp             GGGGCCTTSCCCC--GGGHHHHHHHCTTCCEEEEEEEECTTSCEEEEEEEESCCCCCSTTHH
T ss_pred             HHhhcccCCCCcc--cccchhhheecCCceEeeEEEEEcCCCCEEEEEEeeCCCCcCCcccc
Confidence            9999999988775  45999999999999999999999988888999999999999999887

>d1rc9a1 d.111.1.1 (A:1-164) Cysteine-rich secretory protein (SteCRISP) {Chinese green tree viper (Trimeresurus stejnegeri) [TaxId: 39682]}

class: Alpha and beta proteins (a+b)
fold: PR-1-like
superfamily: PR-1-like
family: PR-1-like
domain: Cysteine-rich secretory protein (SteCRISP)
species: Chinese green tree viper (Trimeresurus stejnegeri) [TaxId: 39682]

Probab=100.00  E-value=2.7e-39  Score=228.03  Aligned_cols=132  Identities=30%  Similarity=0.553  Sum_probs=113.7

Q ss_pred             CCCCCchHHHHHHHHHHHHhhCC-----CCCcccCHHHHHHHHHHHHhhhhcCCC-------------ceeeccCCCChH
Q 044216           23 PSRAQDFPQDYVNAHNAARAQVG-----VNPVKWDESIAAFARSYASQQIASCNL-------------NLAGSSGNLSGA   84 (154)
Q Consensus        23 ~~~~~~~~~~il~~hN~~R~~~~-----m~~L~Wd~~La~~Aq~~a~~~~~~c~~-------------ni~~~~~~~~~~   84 (154)
                      ...+.+++++||+.||.+|++|+     |.+|+||.+|++.||.||++|......             |+.....+..+.
T Consensus         8 ~~~~~~~~~~il~~HN~~R~~~~~~a~~m~~L~Wd~~La~~A~~~a~~c~~~~~~~~~~~~~~~~~g~n~~~~~~~~~~~   87 (164)
T d1rc9a1           8 SPRKPEIQNEIVDLHNSLRRSVNPTASNMLRMEWYPEAADNAERWAYRCIESHSSYESRVIEGIKCGENIYMSPYPMKWT   87 (164)
T ss_dssp             CTTSHHHHHHHHHHHHHHHHTCSSCBSSCBCCEECHHHHHHHHHHHTTTCCSCCCGGGGEETTEECEEEEEEESSCCCHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHcCCCcccccccccCHHHHHHHHHHHHHHhhccCCcccccccccccceEEEEecCCCCHH
Confidence            34456889999999999999997     667999999999999999988743221             455544566899


Q ss_pred             HHHHHHHhhhccCCCCCCCCCCCccchhHHHHHHHhCCeeeEEEEEeCCC--CEEEEEEcCCCCccCCC--CCC
Q 044216           85 DVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKFRCNYG--GTSIGCNYASPGNVVGV--KPY  154 (154)
Q Consensus        85 ~~v~~W~~e~~~y~~~~~~~~~~~~~~~f~q~vw~~t~~vGCa~~~c~~~--~~~~vC~Y~p~gn~~g~--~~Y  154 (154)
                      ++|+.||+|..+|++..+.+..+..++|||||||+++++||||++.|.++  ..++||+|+|+||+.|+  .||
T Consensus        88 ~~v~~W~~E~~~~~~~~~~~~~~~~~ghftqmvW~~t~~vGCa~~~c~~~~~~~~vVC~Y~P~GN~~g~~~~~Y  161 (164)
T d1rc9a1          88 DIIHAWHDEYKDFKYGVGADPPNAVTGHYTQIVWYKSYRIGCAAAYCPSSPYSYFFVCQYCPAGNFIGKTATPY  161 (164)
T ss_dssp             HHHHHHHGGGGGEETTTEESSTTCCCHHHHHHTCTTCCEEEEEEEECTTSSSSEEEEEEEESCCCCTTCTTCSS
T ss_pred             HHHHHHhhhhheeecCCCCCCCcchhhHHHHHhhhcccEEeEEEEEeCCCCceEEEEEEEcCCCccCCCcCCCc
Confidence            99999999999999998887777889999999999999999999999876  57999999999999997  567

>d1qnxa_ d.111.1.1 (A:) Insect allergen 5 (AG5) {Yellow jacket (Vespula vulgaris), Ves v 5 [TaxId: 7454]}

class: Alpha and beta proteins (a+b)
fold: PR-1-like
superfamily: PR-1-like
family: PR-1-like
domain: Insect allergen 5 (AG5)
species: Yellow jacket (Vespula vulgaris), Ves v 5 [TaxId: 7454]

Probab=100.00  E-value=1.2e-36  Score=221.77  Aligned_cols=130  Identities=25%  Similarity=0.473  Sum_probs=108.7

Q ss_pred             CCCchHHHHHHHHHHHHhhCC-----------------CCCcccCHHHHHHHHHHHHhhhh---cCCC--------ceee
Q 044216           25 RAQDFPQDYVNAHNAARAQVG-----------------VNPVKWDESIAAFARSYASQQIA---SCNL--------NLAG   76 (154)
Q Consensus        25 ~~~~~~~~il~~hN~~R~~~~-----------------m~~L~Wd~~La~~Aq~~a~~~~~---~c~~--------ni~~   76 (154)
                      +++++|+.||+.||++|+.++                 |.+|+||++||..||.||++|..   .|..        |++.
T Consensus        41 ~t~~~r~~iL~~HN~~R~~vA~G~~~~~~~~~~P~A~~M~~L~Wd~eLa~~A~~~a~~C~~~~~~~~~~~~~~~Gen~~~  120 (209)
T d1qnxa_          41 LTKQEKQDILKEHNDFRQKIARGLETRGNPGPQPPAKNMKNLVWNDELAYVAQVWANQCQYGHDTCRDVAKYQVGQNVAL  120 (209)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTTCCCCSTTCCCCCBSSCCCCEECHHHHHHHHHHHTTCCCSCCSCCCCSSSCCEEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHhcccccccccCCCCccccCccceECHHHHHHHHHHHhhcccCCCcccCCCCCCCcceeee
Confidence            456789999999999999862                 88999999999999999998873   3332        4543


Q ss_pred             cc----CCCChHHHHHHHHhhhccCCCCCCCCCC-CccchhHHHHHHHhCCeeeEEEEEeCCC---CEEEEEEcCCCCcc
Q 044216           77 SS----GNLSGADVVGLWVSEKADYDYNSNSCNA-GKVCGHYTHVVWRNSVRIGCAKFRCNYG---GTSIGCNYASPGNV  148 (154)
Q Consensus        77 ~~----~~~~~~~~v~~W~~e~~~y~~~~~~~~~-~~~~~~f~q~vw~~t~~vGCa~~~c~~~---~~~~vC~Y~p~gn~  148 (154)
                      ..    ....+.++|+.|++|..+|++..+.+.. +..++|||||||+++++||||++.|..+   ..++||+|+|+||+
T Consensus       121 ~~~~~~~~~~~~~~v~~W~~E~~~~~~~~~~~~~~~~~~ghftQmvw~~t~~VGCa~~~c~~~~~~~~~vVC~Y~p~GN~  200 (209)
T d1qnxa_         121 TGSTAAKYDDPVKLVKMWEDEVKDYNPKKKFSGNDFLKTGHYTQMVWANTKEVGCGSIKYIQEKWHKHYLVCNYGPSGNF  200 (209)
T ss_dssp             EEESSSCCCCHHHHHHHHHGGGGGCCTTSCGGGSCHHHHHHHHHHTCTTCCEEEEEEEEEEETTEEEEEEEEEEESCCCC
T ss_pred             cccCCcCcccHHHHHHHHHHHhhhcCCCcccccCCccccchhHHHhhhhhCEEeEEEEEEcCCCCCEEEEEEEECCCCCC
Confidence            32    1236889999999999999988765543 3569999999999999999999999765   57899999999999


Q ss_pred             CCCCCC
Q 044216          149 VGVKPY  154 (154)
Q Consensus       149 ~g~~~Y  154 (154)
                      .|++||
T Consensus       201 ~g~~~Y  206 (209)
T d1qnxa_         201 KNEELY  206 (209)
T ss_dssp             TTSCSS
T ss_pred             CCCCCC
Confidence            999999