Citrus Sinensis ID: 044224

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440--
MALQDSEVPASILNATGGNRPTASYHPTLWGEKFLDCSSADDSVAMDPTIDQDEFEGLKQKIKNMLNSPTDKSFQKLSLIDAVQRLGVAYHFEREIEDELEKLSHDEYDGNDVHTVALRFRLLRQQGYRISCDIFSGFKDDQGKFKVSLINDVAGMLSLYEAAHLRIHGEDILDDALLSLLLTWNQWLLKPIRRGLPRLEAIYYIDLYSQDDSKDKAILLKFAKLDFCMLQVIHRKELSIITEPLRRGLTRLEARYYNDVYSKDDSKDQTILRFAKLDFCTPKVFHRKELTTLTEWWKTLDVKTKLPYVGDRIVECYFWIMRVYFEPPYSFGRMTLSKIIPFISIIDNTYDAYSAIEEAQLFTNAIKRGDSNITQRNIKRVERYNHINEGLLKPTEVAMPLLECILNLARVMDVIYKDDDGYTNSYVIKDYIATLLEKLVPF
cccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHccccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEccccccccccHHHcccccccEEEEEEccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccccc
ccccccccccccccccccEcccccccccccccHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHcHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccHHHHHHHEcccccEcHHHcccHHHHHHHHHHHcccccccHHHccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccccccHHHHHHHHcccccccHHHHHHHHHHHHccHHccccHHHHHHHHHcHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccHHHHHHcHHHHHHHHHHHHHccccccccHHHcHHHHHHHHHHHHHcHHHHHHHHHHHHccccccHHHEcccc
malqdsevpasilnatggnrptasyhptlwgekfldcssaddsvamdptidqDEFEGLKQKIKNmlnsptdksfqkLSLIDAVQRLGVAYHFEREIEDELEKlshdeydgndvHTVALRFRLLRQqgyriscdifsgfkddqgkFKVSLINDVAGMLSLYEAAHLRIHGEDILDDALLSLLLTWNQWLLKpirrglprLEAIYYIdlysqddsKDKAILLKFAKLDFCMLQVIHRKELSIITEPLRRGLTRLEARYyndvyskddskdqTILRFAkldfctpkvfhrkeLTTLTEWWKTldvktklpyvgdrIVECYFWIMRvyfeppysfgrmtlskiipfisiidNTYDAYSAIEEAQLFTNAIkrgdsnitqrnIKRVerynhinegllkpteVAMPLLECILNLARVMDViykdddgytnsYVIKDYIATLLEKLVPF
malqdsevpasilnatggnrptaSYHPTLWGEKFLDCSSADDSVAMDPTIDQDEFEGLKQKIKNMLNSPTDKSFQKLSLIDAVQRLGVAYHFEREIEDELEklshdeydgnDVHTVALRFRLLRQQGYRISCDIFsgfkddqgkFKVSLINDVAGMLSLYEAAHLRIHGEDILDDALLSLLLTWNQWLLKPIRRGLPRLEAIYYIDLYSQDDSKDKAILLKFAKLDFCMLQVIHrkelsiiteplrrglTRLEARyyndvyskddskdqTILRFAkldfctpkvfhrkelttltewwktldvktklpyvgdRIVECYFWIMRVYFEPPYSFGRMTLSKIIPFISIIDNTYDAYSAIEEAQLFTNaikrgdsnitqrnikrverynhinegllkpteVAMPLLECILNLARVMDVIYKDDDGYTNSYVIKDYIATLLEKLVPF
MALQDSEVPASILNATGGNRPTASYHPTLWGEKFLDCSSADDSVAMDPTIDQDEFEGLKQKIKNMLNSPTDKSFQKLSLIDAVQRLGVAYHFEREIEDELEKLSHDEYDGNDVHTVALRFRLLRQQGYRISCDIFSGFKDDQGKFKVSLINDVAGMLSLYEAAHLRIHGEdilddallsllltwnqwllKPIRRGLPRLEAIYYIDLYSQDDSKDKAILLKFAKLDFCMLQVIHRKELSIITEPLRRGLTRLEARYYNDVYSKDDSKDQTILRFAKLDFCTPKVFHRkelttltewwktlDVKTKLPYVGDRIVECYFWIMRVYFEPPYSFGRMTLSKIIPFISIIDNTYDAYSAIEEAQLFTNAIKRGDSNITQRNIKRVERYNHINEGLLKPTEVAMPLLECILNLARVMDVIYKDDDGYTNSYVIKDYIATLLEKLVPF
************************YHPTLWGEKFLDC************************************FQKLSLIDAVQRLGVAYHFEREIEDELEKLSHDEYDGNDVHTVALRFRLLRQQGYRISCDIFSGFKDDQGKFKVSLINDVAGMLSLYEAAHLRIHGEDILDDALLSLLLTWNQWLLKPIRRGLPRLEAIYYIDLYSQDDSKDKAILLKFAKLDFCMLQVIHRKELSIITEPLRRGLTRLEARYYNDVYSKDDSKDQTILRFAKLDFCTPKVFHRKELTTLTEWWKTLDVKTKLPYVGDRIVECYFWIMRVYFEPPYSFGRMTLSKIIPFISIIDNTYDAYSAIEEAQLFTNAIKRGDSNITQRNIKRVERYNHINEGLLKPTEVAMPLLECILNLARVMD*****************************
************************YHPTLWGEKFLDCSSAD****M**TIDQDEFEGLKQKIKNMLNSPTDKSFQKLSLIDAVQRLGVAYHFEREIEDELEKLSHDEYDGNDVHTVALRFRLLRQQGYRISCDIFSGFKDDQGKFKVSLINDVAGMLSLYEAAHLRIHGEDILDDALLSLLLTWNQWLLKPIRRGLPRLEAIYYIDLYSQDDSKDKAILLKFAKLDFCMLQVIHRKELSIITEPLRRGLTRLEARYYNDVYSKDDSKDQTILRFAKLDFCTPKVFHRKELTTLTEWWKTLDVKTKLPYVGDRIVECYFWIMRVYFEPPYSFGRMTLSKIIPFISIIDNTYDAYSAIEEAQLFTNAIKRGDSNITQRNIKRVERYNHINEGLLKPTEVAMPLLECILNLARVMDVIYKDDDGYTNSYVIKDYIATLLEKLVPF
MALQDSEVPASILNATGGNRPTASYHPTLWGEKFLDCSSADDSVAMDPTIDQDEFEGLKQKIKNMLNSPTDKSFQKLSLIDAVQRLGVAYHFEREIEDELEKLSHDEYDGNDVHTVALRFRLLRQQGYRISCDIFSGFKDDQGKFKVSLINDVAGMLSLYEAAHLRIHGEDILDDALLSLLLTWNQWLLKPIRRGLPRLEAIYYIDLYSQDDSKDKAILLKFAKLDFCMLQVIHRKELSIITEPLRRGLTRLEARYYNDVYSKDDSKDQTILRFAKLDFCTPKVFHRKELTTLTEWWKTLDVKTKLPYVGDRIVECYFWIMRVYFEPPYSFGRMTLSKIIPFISIIDNTYDAYSAIEEAQLFTNAIKRGDSNITQRNIKRVERYNHINEGLLKPTEVAMPLLECILNLARVMDVIYKDDDGYTNSYVIKDYIATLLEKLVPF
*****************GNRPTASYHPTLWGEKFLDCSSADDSVAMDPTIDQDEFEGLKQKIKNMLNSPTDKSFQKLSLIDAVQRLGVAYHFEREIEDELEKLSHDEYDGNDVHTVALRFRLLRQQGYRISCDIFSGFKDDQGKFKVSLINDVAGMLSLYEAAHLRIHGEDILDDALLSLLLTWNQWLLKPIRRGLPRLEAIYYIDLYSQDDSKDKAILLKFAKLDFCMLQVIHRKELSIITEPLRRGLTRLEARYYNDVYSKDDSKDQTILRFAKLDFCTPKVFHRKELTTLTEWWKTLDVKTKLPYVGDRIVECYFWIMRVYFEPPYSFGRMTLSKIIPFISIIDNTYDAYSAIEEAQLFTNAIKRGDSNITQRNIKRVERYNHINEGLLKPTEVAMPLLECILNLARVMDVIYKDDDGYTNSYVIKDYIATLLEKLVPF
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MALQDSEVPASILNATGGNRPTASYHPTLWGEKFLDCSSADDSVAMDPTIDQDEFEGLKQKIKNMLNSPTDKSFQKLSLIDAVQRLGVAYHFEREIEDELEKLSHDEYDGNDVHTVALRFRLLRQQGYRISCDIFSGFKDDQGKFKVSLINDVAGMLSLYEAAHLRIHGEDILDDALLSLLLTWNQWLLKPIRRGLPRLEAIYYIDLYSQDDSKDKAILLKFAKLDFCMLQVIHRKELSIITEPLRRGLTRLEARYYNDVYSKDDSKDQTILRFAKLDFCTPKVFHRKELTTLTEWWKTLDVKTKLPYVGDRIVECYFWIMRVYFEPPYSFGRMTLSKIIPFISIIDNTYDAYSAIEEAQLFTNAIKRGDSNITQRNIKRVERYNHINEGLLKPTEVAMPLLECILNLARVMDVIYKDDDGYTNSYVIKDYIATLLEKLVPF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query442 2.2.26 [Sep-21-2011]
O49853 554 (+)-delta-cadinene syntha N/A no 0.699 0.557 0.424 3e-79
Q39761 554 (+)-delta-cadinene syntha N/A no 0.699 0.557 0.421 7e-79
Q43714 555 (+)-delta-cadinene syntha N/A no 0.705 0.562 0.431 4e-78
Q39760 554 (+)-delta-cadinene syntha N/A no 0.699 0.557 0.414 6e-78
Q6Q3H3 557 (-)-germacrene D synthase yes no 0.699 0.554 0.434 7e-78
P93665 554 (+)-delta-cadinene syntha N/A no 0.699 0.557 0.414 3e-77
Q94JS8 560 (E)-beta-farnesene syntha N/A no 0.703 0.555 0.426 1e-76
E3W207 559 Sesquiterpene synthase OS N/A no 0.705 0.558 0.383 3e-72
B5A435 559 Sesquiterpene synthase OS N/A no 0.705 0.558 0.378 4e-71
Q6Q3H2 556 Valencene synthase OS=Vit no no 0.674 0.535 0.411 1e-70
>sp|O49853|DCS4_GOSAR (+)-delta-cadinene synthase isozyme C2 OS=Gossypium arboreum GN=CAD1-C2 PE=2 SV=1 Back     alignment and function desciption
 Score =  296 bits (757), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 166/391 (42%), Positives = 231/391 (59%), Gaps = 82/391 (20%)

Query: 1   MALQDSEVPASILNATGGN--RPTASYHPTLWGEKFLDCSSADDSVAMDPTID---QDEF 55
           MA Q S++P+S   ++  +  RP A + P++WG+ FL+C         D  ID   +   
Sbjct: 1   MASQVSQMPSSSPLSSNKDEIRPKADFQPSIWGDFFLNCP--------DKNIDAGTEKRH 52

Query: 56  EGLKQKIKNMLNSPTDKSFQKLSLIDAVQRLGVAYHFEREIEDELEKLSHDEYDG-NDVH 114
           + LK++++ M+ +P   S QKL+ ID+VQRLGV+YHF +EIEDELE + H+  D  ND++
Sbjct: 53  QQLKEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDAENDLY 112

Query: 115 TVALRFRLLRQQGYRISCDIFSGFKDDQGKFKVSLINDVAGMLSLYEAAHLRIHGEDILD 174
           T +LRFRLLR+ GY +SCD+F+ FKD+QG FK S+ +DV G+L LY+A++LR+HGEDILD
Sbjct: 113 TTSLRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVQGLLELYQASYLRVHGEDILD 172

Query: 175 DAL------LSLLLTW---------NQWLLKPIRRGLPRLEAIYYIDLYSQDDSKDKAIL 219
           +A+      LSL ++          +  L + IRRGLPR+EA +Y+ +Y   +S +KA L
Sbjct: 173 EAISFTTNHLSLAVSSLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKA-L 231

Query: 220 LKFAKLDFCMLQVIHRKELSIITEPLRRGLTRLEARYYNDVYSKDDSKDQTILRFAKLDF 279
           L+FAK+DF MLQ +HRKELS I                                      
Sbjct: 232 LEFAKIDFNMLQFLHRKELSEI-------------------------------------- 253

Query: 280 CTPKVFHRKELTTLTEWWKTLDVKTKLPYVGDRIVECYFWIMRVYFEPPYSFGRMTLSKI 339
                           WWK LD + KLPY  DR+VE YFWI  VYFEP YS GR  L+K+
Sbjct: 254 --------------CRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKV 299

Query: 340 IPFISIIDNTYDAYSAIEEAQLFTNAIKRGD 370
           I   SI+D+TYD+Y+  EE   +TNAI+R D
Sbjct: 300 IAMASIVDDTYDSYATYEELIPYTNAIERWD 330
Responsible for the cyclization of trans,trans-farnesyl diphosphate (FPP) to (+)-delta cadinene.
Gossypium arboreum (taxid: 29729)
EC: 4EC: .EC: 2EC: .EC: 3EC: .EC: 1EC: 3
>sp|Q39761|DCS1_GOSAR (+)-delta-cadinene synthase isozyme XC1 OS=Gossypium arboreum PE=1 SV=1 Back     alignment and function description
>sp|Q43714|DCS3_GOSAR (+)-delta-cadinene synthase isozyme A OS=Gossypium arboreum GN=CAD1-A PE=2 SV=1 Back     alignment and function description
>sp|Q39760|DCS2_GOSAR (+)-delta-cadinene synthase isozyme XC14 OS=Gossypium arboreum PE=2 SV=1 Back     alignment and function description
>sp|Q6Q3H3|TPSGD_VITVI (-)-germacrene D synthase OS=Vitis vinifera GN=VIT_19s0014g04930 PE=1 SV=1 Back     alignment and function description
>sp|P93665|DCS1_GOSHI (+)-delta-cadinene synthase OS=Gossypium hirsutum GN=CDN1 PE=1 SV=1 Back     alignment and function description
>sp|Q94JS8|FARS_CITJU (E)-beta-farnesene synthase OS=Citrus junos PE=1 SV=1 Back     alignment and function description
>sp|E3W207|SAUSS_SANAS Sesquiterpene synthase OS=Santalum austrocaledonicum PE=2 SV=1 Back     alignment and function description
>sp|B5A435|STPS1_SANAL Sesquiterpene synthase OS=Santalum album PE=1 SV=1 Back     alignment and function description
>sp|Q6Q3H2|TPSVS_VITVI Valencene synthase OS=Vitis vinifera GN=ValCS PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query442
255563621 558 (+)-delta-cadinene synthase isozyme A, p 0.710 0.562 0.460 3e-83
3287826 554 RecName: Full=(+)-delta-cadinene synthas 0.699 0.557 0.424 2e-77
61354279 554 (+)-delta-cadinene synthase [Gossypium h 0.699 0.557 0.419 3e-77
9864189 555 terpene synthase [Citrus junos] 0.699 0.556 0.437 3e-77
3287824 554 RecName: Full=(+)-delta-cadinene synthas 0.699 0.557 0.421 5e-77
359493937 557 PREDICTED: (-)-germacrene D synthase [Vi 0.699 0.554 0.434 2e-76
147856860 557 hypothetical protein VITISV_030783 [Viti 0.699 0.554 0.434 2e-76
147828675 557 hypothetical protein VITISV_013313 [Viti 0.699 0.554 0.434 2e-76
3287835 555 RecName: Full=(+)-delta-cadinene synthas 0.705 0.562 0.431 3e-76
3970689 555 (+)-delta-cadinene synthase [Gossypium a 0.705 0.562 0.431 3e-76
>gi|255563621|ref|XP_002522812.1| (+)-delta-cadinene synthase isozyme A, putative [Ricinus communis] gi|223537896|gb|EEF39510.1| (+)-delta-cadinene synthase isozyme A, putative [Ricinus communis] gi|350284786|gb|AEQ27766.1| alpha-copaene synthase [Ricinus communis] Back     alignment and taxonomy information
 Score =  315 bits (806), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 179/389 (46%), Positives = 236/389 (60%), Gaps = 75/389 (19%)

Query: 1   MALQDSEVP--ASILNATGG-NRPTASYHPTLWGEKFLDCSSADDSVAMDPTIDQDEFEG 57
           M+LQ S VP   S  NAT    R +++YHPT+WG+ FL  ++   S  +D +I+Q +FEG
Sbjct: 1   MSLQVSAVPIKTSTQNATSAVKRHSSTYHPTIWGDHFL--ANLSHSKIIDGSIEQ-QFEG 57

Query: 58  LKQKIKNMLNSPTDKSFQKLSLIDAVQRLGVAYHFEREIEDELEKLSHDEYDG-NDVHTV 116
           LKQK++ M+    ++  +KL LIDAVQRLGV YHF+ EIED L+K+ HD  D  +D++TV
Sbjct: 58  LKQKVRKMIIDLNNEPCKKLGLIDAVQRLGVGYHFKSEIEDVLQKVYHDYSDDEDDLNTV 117

Query: 117 ALRFRLLRQQGYRISCDIFSGFKDDQGKFKVSLINDVAGMLSLYEAAHLRIHGEDILDDA 176
           ALRFRLLRQ G ++SC IF  FKD +G FK SLIND  GMLSLYEA HL I GED+LD+A
Sbjct: 118 ALRFRLLRQHGIKVSCAIFEKFKDSEGNFKTSLINDALGMLSLYEATHLSIRGEDVLDEA 177

Query: 177 LL-------SLLLTWNQWLL--------KPIRRGLPRLEAIYYIDLYSQDDSKDKAILLK 221
           L        S+L   N  L         +PIR+ LPRLEA  YID+Y+ ++S +   LL 
Sbjct: 178 LAFTTTNLQSVLPQLNTHLAAQISRALNRPIRKYLPRLEARNYIDIYATEESYN-TTLLN 236

Query: 222 FAKLDFCMLQVIHRKELSIITEPLRRGLTRLEARYYNDVYSKDDSKDQTILRFAKLDFCT 281
           FAKLDF MLQ +H+KEL+++T                                       
Sbjct: 237 FAKLDFNMLQELHQKELNVVT--------------------------------------- 257

Query: 282 PKVFHRKELTTLTEWWKTLDVKTKLPYVGDRIVECYFWIMRVYFEPPYSFGRMTLSKIIP 341
                        +WWK+LDV TKLPY  DR+VECYFW++ VYFEP YSF R+ ++KII 
Sbjct: 258 -------------KWWKSLDVATKLPYARDRVVECYFWMVGVYFEPQYSFARIMMTKIIA 304

Query: 342 FISIIDNTYDAYSAIEEAQLFTNAIKRGD 370
             S++D+TYD Y+  EE ++ T AI+R D
Sbjct: 305 ITSLLDDTYDNYATGEELEILTEAIERWD 333

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|3287826|sp|O49853.1|DCS4_GOSAR RecName: Full=(+)-delta-cadinene synthase isozyme C2; Short=D-cadinene synthase C2 gi|2879841|emb|CAA76223.1| (+)-delta-cadinene synthase [Gossypium arboreum] Back     alignment and taxonomy information
>gi|61354279|gb|AAX44033.1| (+)-delta-cadinene synthase [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|9864189|gb|AAG01339.1| terpene synthase [Citrus junos] Back     alignment and taxonomy information
>gi|3287824|sp|Q39761.1|DCS1_GOSAR RecName: Full=(+)-delta-cadinene synthase isozyme XC1; Short=D-cadinene synthase XC1 gi|240104441|pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From Gossypium Arboreum And Evolutionary Divergence Of Metal Binding Motifs For Catalysis gi|240104442|pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From Gossypium Arboreum And Evolutionary Divergence Of Metal Binding Motifs For Catalysis gi|241913340|pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From Gossypium Arboreum In Complex With 2-Fluorofarnesyl Diphosphate gi|241913341|pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From Gossypium Arboreum In Complex With 2-Fluorofarnesyl Diphosphate gi|1045312|gb|AAA93064.1| (+)-delta-cadinene synthase isozyme XC1 [Gossypium arboreum] Back     alignment and taxonomy information
>gi|359493937|ref|XP_003634696.1| PREDICTED: (-)-germacrene D synthase [Vitis vinifera] gi|302143188|emb|CBI20483.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147856860|emb|CAN83470.1| hypothetical protein VITISV_030783 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147828675|emb|CAN68620.1| hypothetical protein VITISV_013313 [Vitis vinifera] Back     alignment and taxonomy information
>gi|3287835|sp|Q43714.1|DCS3_GOSAR RecName: Full=(+)-delta-cadinene synthase isozyme A; Short=D-cadinene synthase A gi|1002523|gb|AAB41259.1| (+)-delta-cadinene synthase isozyme A [Gossypium arboreum] gi|1217956|emb|CAA65289.1| (+)-delta-cadinene synthase [Gossypium arboreum] Back     alignment and taxonomy information
>gi|3970689|emb|CAA77191.1| (+)-delta-cadinene synthase [Gossypium arboreum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query442
UNIPROTKB|B2KSJ5 571 B2KSJ5 "(+)-gamma-cadinene syn 0.380 0.294 0.453 7.8e-73
UNIPROTKB|J7LJN5 555 J7LJN5 "Beta-caryophyllene syn 0.334 0.266 0.484 4e-71
UNIPROTKB|E2E2N7 555 TPS4 "Bicyclogermacrene syntha 0.334 0.266 0.434 1.4e-59
UNIPROTKB|B5A435559 B5A435 "Sesquiterpene synthase 0.527 0.416 0.396 1.6e-57
UNIPROTKB|Q8LSC2 558 Q8LSC2 "Germacrene A synthase 0.332 0.263 0.403 2.5e-56
UNIPROTKB|J7LMP2 565 J7LMP2 "Bicyclogermacrene synt 0.536 0.419 0.398 2.6e-53
UNIPROTKB|J7LP58564 J7LP58 "Alpha-copaene/delta-ca 0.545 0.427 0.399 2.9e-48
UNIPROTKB|B2KSJ6 560 B2KSJ6 "Alpha-farnesene syntha 0.352 0.278 0.425 5.1e-47
UNIPROTKB|B3TPQ6550 B3TPQ6 "Beta-cubebene synthase 0.490 0.394 0.380 1.1e-46
UNIPROTKB|Q49SP7 545 Q49SP7 "Gamma-curcumene syntha 0.337 0.273 0.418 1.3e-44
UNIPROTKB|B2KSJ5 B2KSJ5 "(+)-gamma-cadinene synthase" [Cucumis melo (taxid:3656)] Back     alignment and assigned GO terms
 Score = 374 (136.7 bits), Expect = 7.8e-73, Sum P(3) = 7.8e-73
 Identities = 83/183 (45%), Positives = 116/183 (63%)

Query:     1 MALQDSEVPASILNATG---GNRPTASYHPTLWGEKFLDCSSADDSVAMDPTIDQDEFEG 57
             M+ Q S  PASI+         R  A++HP +W E FL  +  DD++ +D  + ++  E 
Sbjct:     1 MSSQVSNFPASIMKTNDIPDVKRSLANFHPNIWKEHFLSFTF-DDALKIDEGM-KERTEK 58

Query:    58 LKQKIKNMLNSPTDKSFQKLSLIDAVQRLGVAYHFEREIEDELEK----------LSHDE 107
             LK++I+ M+ +  +    KL+L+D++QRLGV+YHFE E+++ LE           LS+  
Sbjct:    59 LKEEIRMMMIAYVENQLIKLNLVDSIQRLGVSYHFEDEVDEFLEHIYVSYNNSLLLSNKN 118

Query:   108 YDGNDVHTVALRFRLLRQQGYRISCDIFSGFKDDQGKFKVSLINDVAGMLSLYEAAHLRI 167
              +G D+H  AL FRLLRQQGYRISCDIF  F DD GKFK SL+ D  G+LSLYEA+H+  
Sbjct:   119 SNGEDLHITALLFRLLRQQGYRISCDIFLKFMDDNGKFKESLVEDERGLLSLYEASHMMG 178

Query:   168 HGE 170
             HGE
Sbjct:   179 HGE 181
GO:0010334 "sesquiterpene synthase activity" evidence=IDA
GO:0045338 "farnesyl diphosphate metabolic process" evidence=IDA
GO:0051762 "sesquiterpene biosynthetic process" evidence=IDA
UNIPROTKB|J7LJN5 J7LJN5 "Beta-caryophyllene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|E2E2N7 TPS4 "Bicyclogermacrene synthase" [Origanum vulgare (taxid:39352)] Back     alignment and assigned GO terms
UNIPROTKB|B5A435 B5A435 "Sesquiterpene synthase" [Santalum album (taxid:35974)] Back     alignment and assigned GO terms
UNIPROTKB|Q8LSC2 Q8LSC2 "Germacrene A synthase short form" [Cichorium intybus (taxid:13427)] Back     alignment and assigned GO terms
UNIPROTKB|J7LMP2 J7LMP2 "Bicyclogermacrene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|J7LP58 J7LP58 "Alpha-copaene/delta-cadinene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|B2KSJ6 B2KSJ6 "Alpha-farnesene synthase" [Cucumis melo (taxid:3656)] Back     alignment and assigned GO terms
UNIPROTKB|B3TPQ6 B3TPQ6 "Beta-cubebene synthase" [Magnolia grandiflora (taxid:3406)] Back     alignment and assigned GO terms
UNIPROTKB|Q49SP7 Q49SP7 "Gamma-curcumene synthase" [Pogostemon cablin (taxid:28511)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.30.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query442
cd00684 542 cd00684, Terpene_cyclase_plant_C1, Plant Terpene C 1e-113
pfam01397177 pfam01397, Terpene_synth, Terpene synthase, N-term 3e-62
pfam03936270 pfam03936, Terpene_synth_C, Terpene synthase famil 4e-28
cd00868 284 cd00868, Terpene_cyclase_C1, Terpene cyclases, Cla 1e-27
PLN02592 800 PLN02592, PLN02592, ent-copalyl diphosphate syntha 9e-17
PLN02279 784 PLN02279, PLN02279, ent-kaur-16-ene synthase 1e-16
cd00684542 cd00684, Terpene_cyclase_plant_C1, Plant Terpene C 3e-10
PLN0215096 PLN02150, PLN02150, terpene synthase/cyclase famil 0.001
>gnl|CDD|173832 cd00684, Terpene_cyclase_plant_C1, Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
 Score =  342 bits (879), Expect = e-113
 Identities = 144/362 (39%), Positives = 209/362 (57%), Gaps = 49/362 (13%)

Query: 20  RPTASYHPTLWGEKFLDCSSADDSVAMDPTIDQDEFEGLKQKIKNMLNSP--TDKSFQKL 77
           RP+A++ P+LWG+      S+D S   +    ++E E LK++++ ML         F++L
Sbjct: 1   RPSANFPPSLWGDDHFLSLSSDYS---EEDELEEEIEELKEEVRKMLEDSEYPVDLFERL 57

Query: 78  SLIDAVQRLGVAYHFEREIEDELEKLSH-----DEYDGNDVHTVALRFRLLRQQGYRISC 132
            LID +QRLG++YHFE EI++ L+ +        E + +D++T AL FRLLRQ GY +S 
Sbjct: 58  WLIDRLQRLGISYHFEDEIKEILDYIYRYWTERGESNEDDLYTTALGFRLLRQHGYNVSS 117

Query: 133 DIFSGFKDDQGKFKVSLINDVAGMLSLYEAAHLRIHGEDILDDALLSLLLTWNQWLLKPI 192
           D+F  FKD+ GKFK SL  DV GMLSLYEA+HL   GEDILD+A     L++    L+  
Sbjct: 118 DVFKKFKDEDGKFKESLTQDVKGMLSLYEASHLSFPGEDILDEA-----LSFTTKHLEEK 172

Query: 193 RRGLPRLEAIYYIDLYSQDDSKDKAIL--LKFAKLDFCMLQVIHRKELSIITEPLRRGLT 250
                             +   D  +   +++A L+                 PL   L 
Sbjct: 173 L---------------ESNWIIDPDLSGEIEYA-LEI----------------PLHASLP 200

Query: 251 RLEARYYNDVYSKDDSKDQTILRFAKLDFCTPKVFHRKELTTLTEWWKTLDVKTKLPYVG 310
           RLEAR+Y + Y ++D  ++T+L  AKLDF   +  H++EL  L+ WWK LD+ +KLP+  
Sbjct: 201 RLEARWYIEFYEQEDDHNETLLELAKLDFNILQALHQEELKILSRWWKDLDLASKLPFAR 260

Query: 311 DRIVECYFWIMRVYFEPPYSFGRMTLSKIIPFISIIDNTYDAYSAIEEAQLFTNAIKRGD 370
           DR+VECYFW    YFEP YS  R+ L+K I  I++ID+TYD Y  +EE +LFT A++R D
Sbjct: 261 DRLVECYFWAAGTYFEPQYSLARIALAKTIALITVIDDTYDVYGTLEELELFTEAVERWD 320

Query: 371 SN 372
            +
Sbjct: 321 IS 322

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal region forms a cap over the catalytic core. Loss of diphosphate from the enzyme-bound substrate (GPP, FPP, or GGPP) results in an allylic carbocation that electrophilically attacks a double bond further down the terpene chain to effect the first ring closure. Unlike monoterpene, sesquiterene, and macrocyclic diterpenes synthases, which undergo substrate ionization by diphosphate ester scission, Tpsc-like diterpene synthases catalyze cyclization reactions by an initial protonation step producing a copalyl diphosphate intermediate. These enzymes lack the aspartate-rich sequences mentioned above. Most diterpene synthases have an N-terminal, internal element (approx 210 aa) whose function is unknown. Length = 542
>gnl|CDD|216477 pfam01397, Terpene_synth, Terpene synthase, N-terminal domain Back     alignment and domain information
>gnl|CDD|202816 pfam03936, Terpene_synth_C, Terpene synthase family, metal binding domain Back     alignment and domain information
>gnl|CDD|173837 cd00868, Terpene_cyclase_C1, Terpene cyclases, Class 1 Back     alignment and domain information
>gnl|CDD|215321 PLN02592, PLN02592, ent-copalyl diphosphate synthase Back     alignment and domain information
>gnl|CDD|177918 PLN02279, PLN02279, ent-kaur-16-ene synthase Back     alignment and domain information
>gnl|CDD|173832 cd00684, Terpene_cyclase_plant_C1, Plant Terpene Cyclases, Class 1 Back     alignment and domain information
>gnl|CDD|177811 PLN02150, PLN02150, terpene synthase/cyclase family protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 442
cd00684542 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, C 100.0
PLN02279784 ent-kaur-16-ene synthase 100.0
PLN02592800 ent-copalyl diphosphate synthase 100.0
PF01397183 Terpene_synth: Terpene synthase, N-terminal domain 100.0
PLN0215096 terpene synthase/cyclase family protein 99.79
PF03936270 Terpene_synth_C: Terpene synthase family, metal bi 99.67
cd00868 284 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terp 99.41
cd00684542 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, C 99.35
PLN02279 784 ent-kaur-16-ene synthase 99.19
PLN02592800 ent-copalyl diphosphate synthase 99.16
cd00687 303 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cycl 97.24
cd00385 243 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzym 90.0
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
Probab=100.00  E-value=9e-108  Score=874.57  Aligned_cols=378  Identities=46%  Similarity=0.805  Sum_probs=345.8

Q ss_pred             CCCCCCCCCCCcc-cccccCCCCCcCCCCCCchHHHHHHHHHHHHHHhcCC--CcChhhhhhHHHHHHHhCcccccHHHH
Q 044224           20 RPTASYHPTLWGE-KFLDCSSADDSVAMDPTIDQDEFEGLKQKIKNMLNSP--TDKSFQKLSLIDAVQRLGVAYHFEREI   96 (442)
Q Consensus        20 r~~~~~~ps~W~~-~fl~~~~~~~~~~~~~~~~~~~~~~lk~~vk~~~~~~--~~~~~~~L~lID~lqRLGi~~hFe~EI   96 (442)
                      ||+++||||+||| .|++++++...   .. .+.+++++||++||+|+...  +.|++++|++||+||||||+|||++||
T Consensus         1 r~~~~~~~~~w~~~~~~s~~~~~~~---~~-~~~~~~~~lk~~v~~~~~~~~~~~~~~~~l~liD~lqrLGi~~hF~~EI   76 (542)
T cd00684           1 RPSANFPPSLWGDDHFLSLSSDYSE---ED-ELEEEIEELKEEVRKMLEDSEYPVDLFERLWLIDRLQRLGISYHFEDEI   76 (542)
T ss_pred             CCCCCCCCCcCCCcceeecCCCcch---hH-HHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHcCchhhhHHHH
Confidence            7899999999999 66666554432   11 46789999999999999764  679999999999999999999999999


Q ss_pred             HHHHHHhhcccCC-----CCChHhHHHHHHHhhhcCcccccccccceecCCCccccccchhhhhhHhHHHhhccCCCCcc
Q 044224           97 EDELEKLSHDEYD-----GNDVHTVALRFRLLRQQGYRISCDIFSGFKDDQGKFKVSLINDVAGMLSLYEAAHLRIHGED  171 (442)
Q Consensus        97 ~~~L~~i~~~~~~-----~~dL~~~Al~FRlLR~~Gy~VS~Dvf~~F~d~~g~F~~~~~~d~~glLsLYeAs~l~~~gE~  171 (442)
                      +++|+++|+.|.+     ..|||+|||+|||||||||+||||||++|+|++|+|++++.+|++||||||||||+++|||+
T Consensus        77 ~~~L~~i~~~~~~~~~~~~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~~~~g~f~~~~~~d~~g~l~Ly~As~l~~~gE~  156 (542)
T cd00684          77 KEILDYIYRYWTERGESNEDDLYTTALGFRLLRQHGYNVSSDVFKKFKDEDGKFKESLTQDVKGMLSLYEASHLSFPGED  156 (542)
T ss_pred             HHHHHHHHHhhcccccccCCCHHHHHHHHHHHHHcCCCcCHHHHhhhcCCCCCcCchhhhhhHHHHHHHHHhhcCCCCcH
Confidence            9999999998743     47999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhhcCCccCCchhhHHhhhhccccC---CCchhHHHHHHHHHhhhhhhhHhhhhhhcccccccccc
Q 044224          172 ILDDALLSLLLTWNQWLLKPIRRGLPRLEAIYYIDLYSQ---DDSKDKAILLKFAKLDFCMLQVIHRKELSIITEPLRRG  248 (442)
Q Consensus       172 iL~eA~~fs~~~v~~~L~~P~~~~~~~Le~~~~is~y~~---~~~~~~~~Ll~~akldfn~lq~lh~~El~~L~~pl~~~  248 (442)
                      |||+|+.||            +   .+|++..     .+   ..++    |.+.|+         ++     |..|+|++
T Consensus       157 iLdeA~~ft------------~---~~L~~~~-----~~~~~~~~~----l~~~V~---------~a-----L~~P~~~~  198 (542)
T cd00684         157 ILDEALSFT------------T---KHLEEKL-----ESNWIIDPD----LSGEIE---------YA-----LEIPLHAS  198 (542)
T ss_pred             HHHHHHHHH------------H---HHHHHHh-----hccCCCCch----HHHHHH---------HH-----ccCchhcC
Confidence            999999999            8   8999876     32   2333    777665         66     99999999


Q ss_pred             ccchhhhhhhhhcccCCCCCHHHHHHHHHhcccchhhhHHHHHHHHHHHHhcCCCCCCCCCcCchhHHHHHhhhcccCCC
Q 044224          249 LTRLEARYYNDVYSKDDSKDQTILRFAKLDFCTPKVFHRKELTTLTEWWKTLDVKTKLPYVGDRIVECYFWIMRVYFEPP  328 (442)
Q Consensus       249 L~r~r~r~yI~~y~~~~~~~~~llelAkldFn~~Q~~hq~El~~l~rWw~~~~l~~~l~faRdr~ve~yfw~~~~~~eP~  328 (442)
                      +||+++|+||++|++++++|++||||||+|||+||++||+||++++|||+++||.++|||+|||++|||||++|++|||+
T Consensus       199 ~~rlear~yi~~Y~~~~~~n~~lLelAkldfn~~Q~~hq~El~~~~rWwk~~gL~~~l~~aRdr~ve~yf~~~a~~feP~  278 (542)
T cd00684         199 LPRLEARWYIEFYEQEDDHNETLLELAKLDFNILQALHQEELKILSRWWKDLDLASKLPFARDRLVECYFWAAGTYFEPQ  278 (542)
T ss_pred             CchHHHHHHHHHhCCCccccHHHHHHHHHHHHHHhHhHHHHHHHHhHHHHhcCCcccCCcccchhHHHHHHHHhcccCcc
Confidence            99999999999999999999999999999999999999999999999999999998999999999999999999999999


Q ss_pred             ChhhHHHHHhhhhhhheecccccccCCHHHHHHHHHHHHhcCch------------------------------------
Q 044224          329 YSFGRMTLSKIIPFISIIDNTYDAYSAIEEAQLFTNAIKRGDSN------------------------------------  372 (442)
Q Consensus       329 ~s~~R~~~tK~~~l~~~iDD~yD~ygt~eEl~~ft~av~rWd~~------------------------------------  372 (442)
                      +|.+|+++||++++++++||+||+|||+|||+.||+||+|||.+                                    
T Consensus       279 ~s~~Rl~~aK~~~l~~~iDD~fD~~gt~eEl~~ft~ai~rwd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~~~~  358 (542)
T cd00684         279 YSLARIALAKTIALITVIDDTYDVYGTLEELELFTEAVERWDISAIDQLPEYMKIVFKALLNTVNEIEEELLKEGGSYVV  358 (542)
T ss_pred             chHHHHHHHHHHHHHhhhHhhhccCCCHHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHhcCcchH
Confidence            99999999999999999999999999999999999999999964                                    


Q ss_pred             --------------------------------------------------------hhhhhHh----------------H
Q 044224          373 --------------------------------------------------------ITQRNIK----------------R  380 (442)
Q Consensus       373 --------------------------------------------------------~t~e~~~----------------R  380 (442)
                                                                              +++++++                |
T Consensus       359 ~~~~~~~~~~~~a~l~EA~w~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~r  438 (542)
T cd00684         359 PYLKEAWKDLVKAYLVEAKWAHEGYVPTFEEYMENALVSIGLGPLLLTSFLGMGDILTEEAFEWLESRPKLVRASSTIGR  438 (542)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhhhHHhhHHHHHHHHHHhcCCCCCHHHHHHHhccHHHHHHHHHHHH
Confidence                                                                    2333333                1


Q ss_pred             --------------------HHH-----------------------hHHHHHhhcCC-CCCcHHHHHHHHHHhhhhcccc
Q 044224          381 --------------------VER-----------------------YNHINEGLLKP-TEVAMPLLECILNLARVMDVIY  416 (442)
Q Consensus       381 --------------------v~c-----------------------WK~mNee~l~~-s~~p~~~~~~~lNlaR~~~~~Y  416 (442)
                                          |+|                       ||+||++++++ +++|++++++++|+||+++++|
T Consensus       439 L~NDi~S~~kE~~rGdv~n~V~~ymke~g~s~eeA~~~i~~~ie~~wk~ln~e~l~~~~~~p~~~~~~~~n~~r~~~~~Y  518 (542)
T cd00684         439 LMNDIATYEDEMKRGDVASSIECYMKEYGVSEEEAREEIKKMIEDAWKELNEEFLKPSSDVPRPIKQRFLNLARVIDVFY  518 (542)
T ss_pred             HhcChhhhHHHHhcCCcccHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHh
Confidence                                444                       99999999988 7899999999999999999999


Q ss_pred             ccCCCCCCc-hhHHHHHhhhcccc
Q 044224          417 KDDDGYTNS-YVIKDYIATLLEKL  439 (442)
Q Consensus       417 k~gDg~t~~-~~lKd~I~sLlv~P  439 (442)
                      ++|||||.| +.+|++|++||++|
T Consensus       519 ~~~D~~t~~~~~~~~~i~~ll~~p  542 (542)
T cd00684         519 KEGDGFTHPEGEIKDHITSLLFEP  542 (542)
T ss_pred             cCCCCCCCccHHHHHHHHHHhcCC
Confidence            999999998 78999999999998

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>PLN02150 terpene synthase/cyclase family protein Back     alignment and domain information
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1 Back     alignment and domain information
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1 Back     alignment and domain information
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1 Back     alignment and domain information
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query442
3g4d_A 554 Crystal Structure Of (+)-Delta-Cadinene Synthase Fr 2e-72
3g4d_A554 Crystal Structure Of (+)-Delta-Cadinene Synthase Fr 9e-06
1hxc_A 548 Crystal Structure Of Teas C440w Length = 548 3e-62
1hxc_A548 Crystal Structure Of Teas C440w Length = 548 2e-05
5eau_A 548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 3e-62
5eau_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 2e-05
3lz9_A 550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 2e-61
3lz9_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 2e-05
3m01_A 550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 2e-61
3m01_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 2e-05
4di5_A 535 Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synt 2e-61
4di5_A535 Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synt 2e-05
5eat_A 548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 3e-61
5eat_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 2e-05
5eas_A 548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 3e-61
5eas_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 2e-05
1hxg_A 548 Crystal Structure Of Teas W273sC440W Length = 548 1e-60
1hxg_A548 Crystal Structure Of Teas W273sC440W Length = 548 2e-05
1hx9_A 548 Crystal Structure Of Teas W273s Form 1 Length = 548 2e-60
1hx9_A548 Crystal Structure Of Teas W273s Form 1 Length = 548 2e-05
3n0f_A 555 Crystal Structure Of Isoprene Synthase From Grey Po 4e-43
2j5c_A 569 Rational Conversion Of Substrate And Product Specif 1e-36
2ong_A 543 Crystal Structure Of Of Limonene Synthase With 2- F 9e-29
1n1b_A 549 Crystal Structure Of (+)-bornyl Diphosphate Synthas 3e-28
3sae_A 817 Structure Of A Three-Domain Sesquiterpene Synthase: 3e-20
3s9v_A 785 Abietadiene Synthase From Abies Grandis Length = 78 5e-20
3p5p_A 764 Crystal Structure Of Taxadiene Synthase From Pacifi 2e-16
3pya_A 727 Crystal Structure Of Ent-Copalyl Diphosphate Syntha 1e-11
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From Gossypium Arboreum And Evolutionary Divergence Of Metal Binding Motifs For Catalysis Length = 554 Back     alignment and structure 
Iteration: 1

 Score =  270 bits (689), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 154/391 (39%), Positives = 218/391 (55%), Gaps = 82/391 (20%)
Query: 1   MALQDSEVPASILNATGGN--RPTASYHPTLWGEKFLDCSSADDSVAMDPTID---QDEF 55
           MA Q S++P+S   ++  +  RP A + P++WG+ FL+C         D  ID   +   
Sbjct: 1   MASQVSQMPSSSPLSSNKDEMRPKADFQPSIWGDLFLNCP--------DKNIDAETEKRH 52
Query: 56  EGLKQKIKNMLNSPTDKSFQKLSLIDAVQRLGVAYHFEREIEDELEKLSHDEYDG-NDVH 114
           + LK++++ M+ +P   S QKL+ ID+VQRLGV+YHF +EIEDELE + H+  D  ND++
Sbjct: 53  QQLKEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDAENDLY 112
Query: 115 TVALRFRLLRQQGYRISCDIFSGFKDDQGKFKVSLINDVAGMLSLYEAAHLRIHGE---- 170
           T ++RFRLLR+ GY +SCD+F+ FKD+QG FK S+ +DV G+L LY+A++LR+HGE    
Sbjct: 113 TTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILD 172
Query: 171 -----------XXXXXXXXXXXXXXXXXXXKPIRRGLPRLEAIYYIDLYSQDDSKDKAIL 219
                                         + IRRGLPR+EA +Y+ +Y   +S +KA L
Sbjct: 173 EAISFTTHHLSLAVASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKA-L 231
Query: 220 LKFAKLDFCMLQVIHRKELSIITEPLRRGLTRLEARYYNDVYSKDDSKDQTILRFAKLDF 279
           L+FAK+DF MLQ +HRKELS I             R++ D+                   
Sbjct: 232 LEFAKIDFNMLQFLHRKELSEI------------CRWWKDL------------------- 260
Query: 280 CTPKVFHRXXXXXXXXXXXXXDVKTKLPYVGDRIVECYFWIMRVYFEPPYSFGRMTLSKI 339
                                D + KLPY  DR+VE YFWI  VYFEP YS GR  L+K+
Sbjct: 261 ---------------------DFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKV 299
Query: 340 IPFISIIDNTYDAYSAIEEAQLFTNAIKRGD 370
           I   SI+D+TYD+Y+  EE   +TNAI+R D
Sbjct: 300 IAMASIVDDTYDSYATYEELIPYTNAIERWD 330
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From Gossypium Arboreum And Evolutionary Divergence Of Metal Binding Motifs For Catalysis Length = 554 Back     alignment and structure
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w Length = 548 Back     alignment and structure
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w Length = 548 Back     alignment and structure
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4 Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphospha Length = 550 Back     alignment and structure
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4 Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphospha Length = 550 Back     alignment and structure
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphosphate Length = 550 Back     alignment and structure
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphosphate Length = 550 Back     alignment and structure
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase From Nicotiana Tobaccum With Geraniline Length = 535 Back     alignment and structure
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase From Nicotiana Tobaccum With Geraniline Length = 535 Back     alignment and structure
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate Analog Farnesyl Hydroxyphosphonate Length = 548 Back     alignment and structure
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate Analog Farnesyl Hydroxyphosphonate Length = 548 Back     alignment and structure
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W Length = 548 Back     alignment and structure
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W Length = 548 Back     alignment and structure
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1 Length = 548 Back     alignment and structure
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1 Length = 548 Back     alignment and structure
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar Leaves (Populus X Canescens) Length = 555 Back     alignment and structure
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity In A Monoterpene Synthase. Structural Insights Into The Molecular Basis Of Rapid Evolution. Length = 569 Back     alignment and structure
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2- Fluorogeranyl Diphosphate (Fgpp). Length = 543 Back     alignment and structure
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From Sage Length = 549 Back     alignment and structure
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A Prospective Target For Advanced Biofuels Production Length = 817 Back     alignment and structure
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis Length = 785 Back     alignment and structure
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew (Taxus Brevifolia) In Complex With Mg2+ And 13-Aza-13,14-Dihydrocopalyl Diphosphate Length = 764 Back     alignment and structure
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From Arabidopsis Thaliana In Complex With (S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate Length = 727 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query442
3g4d_A 554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 9e-83
2j5c_A 569 1,8-cineole synthase; terpene synthases, 1, monote 4e-79
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 4e-07
3m00_A 550 Aristolochene synthase; plant terpenoid cyclase, l 4e-78
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 1e-09
3n0f_A 555 Isoprene synthase; terpene cyclase fold, hemiterpe 2e-77
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 8e-11
2ong_A 543 4S-limonene synthase; monoterpene synthase, monote 3e-76
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 3e-09
1n1b_A 549 (+)-bornyl diphosphate synthase; terpene synthase 5e-75
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 7e-11
3pya_A 727 ENT-copalyl diphosphate synthase, chloroplastic; c 2e-57
3s9v_A 785 Abietadiene synthase, chloroplastic; alpha bundle/ 3e-55
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 3e-08
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 1e-54
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 2e-11
3p5p_A 764 Taxadiene synthase; class I and II terpene cyclase 1e-53
3p5p_A764 Taxadiene synthase; class I and II terpene cyclase 5e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-05
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Length = 554 Back     alignment and structure
 Score =  263 bits (674), Expect = 9e-83
 Identities = 152/384 (39%), Positives = 221/384 (57%), Gaps = 60/384 (15%)

Query: 1   MALQDSEVPASILNAT--GGNRPTASYHPTLWGEKFLDCSSADDSVAMDPTIDQDEFEGL 58
           MA Q S++P+S   ++     RP A + P++WG+ FL+C   +          +   + L
Sbjct: 1   MASQVSQMPSSSPLSSNKDEMRPKADFQPSIWGDLFLNCPDKNIDAET-----EKRHQQL 55

Query: 59  KQKIKNMLNSPTDKSFQKLSLIDAVQRLGVAYHFEREIEDELEKLSHD-EYDGNDVHTVA 117
           K++++ M+ +P   S QKL+ ID+VQRLGV+YHF +EIEDELE + H+     ND++T +
Sbjct: 56  KEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDAENDLYTTS 115

Query: 118 LRFRLLRQQGYRISCDIFSGFKDDQGKFKVSLINDVAGMLSLYEAAHLRIHGEDILDDA- 176
           +RFRLLR+ GY +SCD+F+ FKD+QG FK S+ +DV G+L LY+A++LR+HGEDILD+A 
Sbjct: 116 IRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAI 175

Query: 177 ------LLSLLLTWNQWLLKPIRRGLPRLEAIYYIDLYSQDDSKDKAILLKFAKLDFCML 230
                 L   + + +  L + +   L +                                
Sbjct: 176 SFTTHHLSLAVASLDHPLSEEVSHALKQ-------------------------------- 203

Query: 231 QVIHRKELSIITEPLRRGLTRLEARYYNDVYSKDDSKDQTILRFAKLDFCTPKVFHRKEL 290
                         +RRGL R+EAR+Y  VY   +S ++ +L FAK+DF   +  HRKEL
Sbjct: 204 -------------SIRRGLPRVEARHYLSVYQDIESHNKALLEFAKIDFNMLQFLHRKEL 250

Query: 291 TTLTEWWKTLDVKTKLPYVGDRIVECYFWIMRVYFEPPYSFGRMTLSKIIPFISIIDNTY 350
           + +  WWK LD + KLPY  DR+VE YFWI  VYFEP YS GR  L+K+I   SI+D+TY
Sbjct: 251 SEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDTY 310

Query: 351 DAYSAIEEAQLFTNAIKRGDSNIT 374
           D+Y+  EE   +TNAI+R D    
Sbjct: 311 DSYATYEELIPYTNAIERWDIKCI 334
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Length = 569 Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Length = 569 Back     alignment and structure
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Length = 550 Back     alignment and structure
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Length = 550 Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Length = 555 Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Length = 555 Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Length = 543 Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Length = 543 Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Length = 549 Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Length = 549 Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Length = 727 Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Length = 785 Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Length = 785 Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817 Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817 Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Length = 764 Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Length = 764 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query442
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 100.0
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 100.0
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 100.0
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 100.0
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 100.0
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 100.0
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 100.0
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 100.0
3p5p_A764 Taxadiene synthase; class I and II terpene cyclase 100.0
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 100.0
1ps1_A 337 Pentalenene synthase; antibiotic biosynthesis, ses 99.61
3bny_A 320 Aristolochene synthase; sesquiterpene cyclase, iso 99.57
1di1_A 300 Aristolochene synthase; sesquiterpene cyclase, iso 99.55
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 99.39
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 99.39
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 99.38
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 99.36
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 99.35
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 99.3
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 99.29
3p5p_A 764 Taxadiene synthase; class I and II terpene cyclase 99.28
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 99.25
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 99.22
3kb9_A 382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 98.96
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Back     alignment and structure
Probab=100.00  E-value=1.2e-119  Score=962.43  Aligned_cols=399  Identities=46%  Similarity=0.812  Sum_probs=341.1

Q ss_pred             CCCCCCCCccccCCC--CCCCCCCCCCCCCCCcccccccCCCCCcCCCCCCchHHHHHHHHHHHHHHhcCCCcChhhhhh
Q 044224            1 MALQDSEVPASILNA--TGGNRPTASYHPTLWGEKFLDCSSADDSVAMDPTIDQDEFEGLKQKIKNMLNSPTDKSFQKLS   78 (442)
Q Consensus         1 ~~~~~~~~~~~~~~~--~~~~r~~~~~~ps~W~~~fl~~~~~~~~~~~~~~~~~~~~~~lk~~vk~~~~~~~~~~~~~L~   78 (442)
                      ||.+.+..+++.+..  .+..||+||||||+|||+||++ +. .+.  . +.+.+++++||++||+||.+...+++++|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~R~~~~~~ps~W~~~fl~~-~~-~~~--~-~~~~~~~e~Lk~eVr~~l~~~~~~~~~~l~   75 (554)
T 3g4d_A            1 MASQVSQMPSSSPLSSNKDEMRPKADFQPSIWGDLFLNC-PD-KNI--D-AETEKRHQQLKEEVRKMIVAPMANSTQKLA   75 (554)
T ss_dssp             ------------------------CCCCCCTTTTTTTSC-CC------C-HHHHHHHHHHHHHHHHHHHSCCSSHHHHHH
T ss_pred             CCcccccccchhhhhccCCCCCCCCCCCccccccccccC-CC-chh--h-HHHHHHHHHHHHHHHHHHHhcccCHHHHHH
Confidence            455555555544433  3458999999999999999997 32 221  2 367899999999999999753578999999


Q ss_pred             HHHHHHHhCcccccHHHHHHHHHHhhccc-CCCCChHhHHHHHHHhhhcCcccccccccceecCCCccccccchhhhhhH
Q 044224           79 LIDAVQRLGVAYHFEREIEDELEKLSHDE-YDGNDVHTVALRFRLLRQQGYRISCDIFSGFKDDQGKFKVSLINDVAGML  157 (442)
Q Consensus        79 lID~lqRLGi~~hFe~EI~~~L~~i~~~~-~~~~dL~~~Al~FRlLR~~Gy~VS~Dvf~~F~d~~g~F~~~~~~d~~glL  157 (442)
                      |||+||||||+|||++||+++|+++|+.. .+..|||+|||+|||||||||+||||||++|+|++|+|++++.+|++|||
T Consensus        76 lID~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~dl~~~al~FRlLR~hGy~VS~dvf~~F~~~~g~F~~~l~~d~~glL  155 (554)
T 3g4d_A           76 FIDSVQRLGVSYHFTKEIEDELENIYHNNNDAENDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLL  155 (554)
T ss_dssp             HHHHHHHTTCGGGCHHHHHHHHHHHHHSCCCTTCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSBCHHHHHCHHHHH
T ss_pred             HHHHHHHcCchhhhHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCCCChhHHhhhcccCCCcccccccchHHHH
Confidence            99999999999999999999999999752 12369999999999999999999999999999999999999999999999


Q ss_pred             hHHHhhccCCCCcchHHHHHHHHHHHHHHhhcCCccCCchhhHHhhhhccccCCCchhHHHHHHHHHhhhhhhhHhhhhh
Q 044224          158 SLYEAAHLRIHGEDILDDALLSLLLTWNQWLLKPIRRGLPRLEAIYYIDLYSQDDSKDKAILLKFAKLDFCMLQVIHRKE  237 (442)
Q Consensus       158 sLYeAs~l~~~gE~iL~eA~~fs~~~v~~~L~~P~~~~~~~Le~~~~is~y~~~~~~~~~~Ll~~akldfn~lq~lh~~E  237 (442)
                      +||||||+++|||+|||+|+.||            +   .+|++..     .+..++    |.+.|+         |+  
T Consensus       156 ~LYeAs~l~~~gE~iLdeA~~fs------------~---~~L~~~~-----~~~~~~----l~~~V~---------~a--  200 (554)
T 3g4d_A          156 ELYQASYLRVHGEDILDEAISFT------------T---HHLSLAV-----ASLDHP----LSEEVS---------HA--  200 (554)
T ss_dssp             HHHHHHTTCCTTCHHHHHHHHHH------------H---HHHHHHS-----TTCCTT----HHHHHH---------HH--
T ss_pred             HHHHHHhCCCCCcHHHHHHHHHH------------H---HHHHHHH-----hccCch----HHHHHH---------HH--
Confidence            99999999999999999999999            8   8898765     333333    777665         67  


Q ss_pred             hccccccccccccchhhhhhhhhcccCCCCCHHHHHHHHHhcccchhhhHHHHHHHHHHHHhcCCCCCCCCCcCchhHHH
Q 044224          238 LSIITEPLRRGLTRLEARYYNDVYSKDDSKDQTILRFAKLDFCTPKVFHRKELTTLTEWWKTLDVKTKLPYVGDRIVECY  317 (442)
Q Consensus       238 l~~L~~pl~~~L~r~r~r~yI~~y~~~~~~~~~llelAkldFn~~Q~~hq~El~~l~rWw~~~~l~~~l~faRdr~ve~y  317 (442)
                         |+.|+|+++||+++|+||+.|++++++|++||+|||+|||+||++||+||++|+||||++||+++|||||||+||||
T Consensus       201 ---L~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~El~~l~rWwk~~~l~~~L~faRdr~ve~y  277 (554)
T 3g4d_A          201 ---LKQSIRRGLPRVEARHYLSVYQDIESHNKALLEFAKIDFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGY  277 (554)
T ss_dssp             ---HHCCTTTSCHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCTTCCCCHHHHH
T ss_pred             ---hCCCccCCchHHHHHHHHHHhCcCccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCcccCCchHHHHHHHH
Confidence               99999999999999999999999999999999999999999999999999999999999999889999999999999


Q ss_pred             HHhhhcccCCCChhhHHHHHhhhhhhheecccccccCCHHHHHHHHHHHHhcCch-------------------------
Q 044224          318 FWIMRVYFEPPYSFGRMTLSKIIPFISIIDNTYDAYSAIEEAQLFTNAIKRGDSN-------------------------  372 (442)
Q Consensus       318 fw~~~~~~eP~~s~~R~~~tK~~~l~~~iDD~yD~ygt~eEl~~ft~av~rWd~~-------------------------  372 (442)
                      ||++|++|||+||.+|+++||+++++|+|||+||+|||+|||++||+||+|||++                         
T Consensus       278 fw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~ai~RWD~~~~~~LPeymK~~f~al~~~~~e~~~  357 (554)
T 3g4d_A          278 FWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMVQ  357 (554)
T ss_dssp             HHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCCGGGGGGSCGGGHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhCCccccHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999987                         


Q ss_pred             -------------------------------------------------------------------hhhhhHh------
Q 044224          373 -------------------------------------------------------------------ITQRNIK------  379 (442)
Q Consensus       373 -------------------------------------------------------------------~t~e~~~------  379 (442)
                                                                                         +|+|+++      
T Consensus       358 ~~~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~mg~~lt~e~~e~~~~~p  437 (554)
T 3g4d_A          358 LVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDIVTPETFKWAASDP  437 (554)
T ss_dssp             HHGGGTCTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHGGGSCHHHHHHHHHHTSCTTSCHHHHHHHHTCC
T ss_pred             HHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhccceeehHHHHHHHHHHhcCCCCCHHHHHhccccH
Confidence                                                                               3444444      


Q ss_pred             ----------H--------------------HHH-----------------------hHHHHHhhcCCCCCcHHHHHHHH
Q 044224          380 ----------R--------------------VER-----------------------YNHINEGLLKPTEVAMPLLECIL  406 (442)
Q Consensus       380 ----------R--------------------v~c-----------------------WK~mNee~l~~s~~p~~~~~~~l  406 (442)
                                |                    |+|                       ||+||+||++++++|++++++++
T Consensus       438 ~i~~~~~~I~RL~NDI~S~k~E~~rG~van~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN~e~l~~~~~p~~~~~~~~  517 (554)
T 3g4d_A          438 KIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQEAYDVFNKHVESAWKDLNQEFLKPTEMPTEVLNRSL  517 (554)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCC------CCCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccchhhhhhccCCccHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence                      1                    666                       99999999998899999999999


Q ss_pred             HHhhhhccccccCCCCCCc-hhHHHHHhhhccccccC
Q 044224          407 NLARVMDVIYKDDDGYTNS-YVIKDYIATLLEKLVPF  442 (442)
Q Consensus       407 NlaR~~~~~Yk~gDg~t~~-~~lKd~I~sLlv~PIpl  442 (442)
                      |+||+++|||++|||||.| ..+|++|.+||++|||+
T Consensus       518 NlaR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~l  554 (554)
T 3g4d_A          518 NLARVMDVLYREGDGYTYVGKAAKGGITSLLIEPIAL  554 (554)
T ss_dssp             HHHHHHHHHSCC-----CCCHHHHHHHHHHHTCCCCC
T ss_pred             HHHHHHHHHhcCCCCCCCccHHHHHHHHHHhcCCCCC
Confidence            9999999999999999998 78999999999999996
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Back     alignment and structure
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Back     alignment and structure
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 442
d5easa1197 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase 3e-55
d1n1ba1207 a.102.4.1 (A:64-270) (+)-bornyl diphosphate syntha 5e-48
d5easa2 328 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase 3e-35
d5easa2328 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase 2e-11
d1n1ba2 328 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synth 1e-33
d1n1ba2328 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synth 7e-13
d1ps1a_ 311 a.128.1.4 (A:) Pentalenene synthase {Streptomyces 1e-06
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 197 Back     information, alignment and structure

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpenoid cyclase N-terminal domain
domain: 5-Epi-aristolochene synthase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score =  180 bits (457), Expect = 3e-55
 Identities = 81/201 (40%), Positives = 125/201 (62%), Gaps = 20/201 (9%)

Query: 29  LWGEKFLDCSSADDSVAMDPTIDQDEFEGLKQKIKNMLNSPTDKSFQKLSLIDAVQRLGV 88
           LWG++FL   S D+ VA        E E LK++ ++ML +   K    L+LID ++RLG+
Sbjct: 1   LWGDQFLS-FSIDNQVAEKYA---QEIEALKEQTRSMLLATGRKLADTLNLIDIIERLGI 56

Query: 89  AYHFEREIEDELEKLSHDEYDGNDVHTVALRFRLLRQQGYRISCDIFSGFKDDQGKFKVS 148
           +YHFE+EI++ L+++ +   + ND+ T AL+FRLLRQ G+ IS +IFS F+D+ GKFK S
Sbjct: 57  SYHFEKEIDEILDQIYNQNSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKES 116

Query: 149 LINDVAGMLSLYEAAHLRIHGEDILDDA-------LLSLLLTWNQWLLK--------PIR 193
           L +DV G+L+LYEA+H+R H +DIL+DA       L S        L +         + 
Sbjct: 117 LASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQVTHALEQCLH 176

Query: 194 RGLPRLEAIYYID-LYSQDDS 213
           +G+PR+E  ++I  +Y ++ S
Sbjct: 177 KGVPRVETRFFISSIYDKEQS 197
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 207 Back     information, alignment and structure
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 328 Back     information, alignment and structure
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 328 Back     information, alignment and structure
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 328 Back     information, alignment and structure
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 328 Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Length = 311 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query442
d5easa2328 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1n1ba2328 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d5easa1197 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1n1ba1207 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d1n1ba1207 (+)-bornyl diphosphate synthase {Garden sage (Salv 98.01
d1ps1a_ 311 Pentalenene synthase {Streptomyces sp., UC5319 [Ta 97.95
d5easa1197 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 97.92
d1n1ba2328 (+)-bornyl diphosphate synthase {Garden sage (Salv 96.81
d5easa2328 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 96.79
d1di1a_ 300 Aristolochene synthase {Fungus (Penicillium roquef 93.2
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: 5-Epi-aristolochene synthase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=100.00  E-value=1.2e-60  Score=479.13  Aligned_cols=176  Identities=48%  Similarity=0.886  Sum_probs=157.6

Q ss_pred             CCHHHHHHHHHhcccchhhhHHHHHHHHHHHHhcCCCCCCCCCcCchhHHHHHhhhcccCCCChhhHHHHHhhhhhhhee
Q 044224          267 KDQTILRFAKLDFCTPKVFHRKELTTLTEWWKTLDVKTKLPYVGDRIVECYFWIMRVYFEPPYSFGRMTLSKIIPFISII  346 (442)
Q Consensus       267 ~~~~llelAkldFn~~Q~~hq~El~~l~rWw~~~~l~~~l~faRdr~ve~yfw~~~~~~eP~~s~~R~~~tK~~~l~~~i  346 (442)
                      +|++||||||||||+||++||+||+.|+|||+++|+.++|||||||+||||||++|++|||+||.+|++|||+++++|++
T Consensus         1 ~N~~lLelAKlDFN~~Q~~hq~El~~l~rWw~~~~l~~~l~~aRdr~ve~Yfw~~~~~fEP~~s~~R~~~aK~~~l~ti~   80 (328)
T d5easa2           1 KNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIV   80 (328)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCTTSCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhCCcccCCchHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHhh
Confidence            58999999999999999999999999999999999988999999999999999999999999999999999999999999


Q ss_pred             cccccccCCHHHHHHHHHHHHhcCch------------------------------------------------------
Q 044224          347 DNTYDAYSAIEEAQLFTNAIKRGDSN------------------------------------------------------  372 (442)
Q Consensus       347 DD~yD~ygt~eEl~~ft~av~rWd~~------------------------------------------------------  372 (442)
                      ||+||+|||+|||++||+||+|||.+                                                      
T Consensus        81 DD~yD~ygt~eEl~~ft~ai~rWd~~~~~~lp~ymk~~~~~l~~~~~e~~~~~~~~~~~~~~~~l~~~w~~~~~~~l~EA  160 (328)
T d5easa2          81 DDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVES  160 (328)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHHHTCSGGGGGSCHHHHHHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcccCCCHHHHHHHHHHHhcCCcchhhhCCchHHHHHHHHHHHHHHHHHHHHHhcCeeeHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988                                                      


Q ss_pred             -------------------------------------hhhhhHh----------------H-------------------
Q 044224          373 -------------------------------------ITQRNIK----------------R-------------------  380 (442)
Q Consensus       373 -------------------------------------~t~e~~~----------------R-------------------  380 (442)
                                                           +++|+++                |                   
T Consensus       161 ~W~~~g~vPt~eEYl~~~~~s~~~~~l~~~~~~~~g~~~~e~~~~~~~~p~l~~~~~~i~RL~NDi~s~~~E~~rG~~~s  240 (328)
T d5easa2         161 TWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKSATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIAT  240 (328)
T ss_dssp             HHHHHTCCCCHHHHHHHHTGGGCHHHHHHHHHHTCTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCTTC
T ss_pred             HHHhCCCCCChHhhhcceeeeehHHHHHHHHHHhCCCCcHHHHHhcccchHHHHHHHHHHHHHhhhHHHHHHhccCCCCe
Confidence                                                 2222222                1                   


Q ss_pred             -HHH-----------------------hHHHHHhhcCCCCCcHHHHHHHHHHhhhhccccccC-CCCCCc-hhHHHHHhh
Q 044224          381 -VER-----------------------YNHINEGLLKPTEVAMPLLECILNLARVMDVIYKDD-DGYTNS-YVIKDYIAT  434 (442)
Q Consensus       381 -v~c-----------------------WK~mNee~l~~s~~p~~~~~~~lNlaR~~~~~Yk~g-Dg~t~~-~~lKd~I~s  434 (442)
                       |+|                       ||+||+++++++++|.+++++++|+||+++|+|++| ||||.| +.+|++|.+
T Consensus       241 ~I~cym~e~g~t~EeA~~~i~~~ie~~wk~ln~e~l~~~~~~~~~~~~~~n~ar~~~~~Y~~~~D~yt~~~~~~k~~i~~  320 (328)
T d5easa2         241 GIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHIIN  320 (328)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTSSSCSSCGGGTHHHHHHHHHHHHHTC-----------CCHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCchHHHHHHHHH
Confidence             666                       999999999999999999999999999999999987 999999 679999999


Q ss_pred             hccccccC
Q 044224          435 LLEKLVPF  442 (442)
Q Consensus       435 Llv~PIpl  442 (442)
                      |||+|||+
T Consensus       321 ll~epi~~  328 (328)
T d5easa2         321 LLVDSIKI  328 (328)
T ss_dssp             HHTCCCCC
T ss_pred             HhccCCcC
Confidence            99999997
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Back     information, alignment and structure
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Back     information, alignment and structure